Citrus Sinensis ID: 047629

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-----
Protein Sequence
MAISSLSLQALFLLMTIHITAQSPAANGTDFSCSADSLPSCKTYVAYFAQSPEFLDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPIICGCTGNQYFANITYQIKKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLITYVWQPGDDVSQVGAKLNASSAAIETENEYRNFSEAVSLPVLIPVSQLPSLSQSYPSTKRNGSKHHLTLIIPISAGGALLILLVAALVIYNHHLQRKRVRILNRNGSSLESADLIPMKENSKSDRFEPKLAQNKLLPGVSGYLGKPIVYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTETLERSWTSGLEAEEAFQFISPVTAR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHccccccccccEEcccccccccccEEEccccccccccHHHHHHHHcccHHHHHHHccccccccccccccEEEEEEEEcccccccEEEEcEEEcccccHHHHHHHHHccHHHHHHHHHHcccccccccccccEEEEEEEcccccccccccccccEEEEEEcccccHHHHHHHHcccHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHccccccccccccEEEEEEcccEEEEEccHHHHHHHHHHHHcccccccccEEEEEEcccccEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEcccccccccccccccEEEccccccccccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHcccccccccccEccccccccccEEEEEEEcccccccHHHHHHHccccHHHHHHcccccccccccccccEEEEEEEEccccccEEEEEEccccccccccEccccccccccccccccccccccccccHHHHHccccccccEcccccccccccEEEEEEEccccccccEccHHHHHHHHHHcccccEEEEcccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEcHHHHHHHHccccHHccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEcccccEEEEEEEcccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEccccHcHEEEcccccccEcccccccccccccccccHHHHHHEEEEEEEcccccccccccccccHHHHHHHHHHHccccccccHHHHHcHHHcccccHHHHHHHHHHHHHHHHccHcccccHHHHHHHHccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MAISSLSLQALFLLMTIHitaqspaangtdfscsadslpsckTYVAYFAqspefldlsnisdlfgvsRLSIARAsnlvsedtplvpkqlllvpiicgctgnqyfANITYQIKKGDSYYLVSITSFENLTNWHAVLemnpginpnllqigvkvtfplfckcpsktnmeDGIENLITYvwqpgddvsqvGAKLNASSAAIETENeyrnfseavslpvlipvsqlpslsqsypstkrngskhhlTLIIPISAGGALLILLVAALVIYNHHLQRKRVRILNrngsslesadlipmkensksdrfepklaqnkllpgvsgylgkpIVYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMgvssdsqgnrFLVYEYAEngsldkwlhpksksssssgsvIFLTWSQRLRVALDVANGLQymhehaqpsivhrdirtnniqldsRFKAKIAnfslaapatndvmpkfdVFAFGVVLLELLsgkkatrttengKTAVLWKEIREVLKVEEKREERLRnwmdpnlesfypidgALSLATLARACTmdkslsrpnmAEVVFNLSVLTQSTETLERSWtsgleaeeafqfispvtar
Flexible Loop (DISEMBL)
MAISSLSLQALFLLMTIHITAQSPAANGTDFSCSADSLPSCKTYVAYFAQSPEFLDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPIICGCTGNQYFANITYQIKKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLITYVWQPGDDVSQVGAKLNASSAAIETENEYRNFSEAVSLPVLIPVSQLPSLSQSYPSTKRNGSKHHLTLIIPISAGGALLILLVAALVIYNHHLQRKRVRIlnrngsslesadlipmkensksdrfepklaqnkllpgvsgylGKPIVYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEhaqpsivhrdIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELlsgkkatrttengktavlwKEIREVLKVEEKReerlrnwmdpnlesFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTETLERSWTsgleaeeafqfispvtar
Low Complexity Region (SEG)
MAISSLSLQALFLLMTIHITAQSPAANGTDFSCSADSLPSCKTYVAYFAQSPEFLDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPIICGCTGNQYFANITYQIKKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLITYVWQPGDDVSQVGAKLNASSAAIETENEYRNFSEAvslpvlipvsqlpslsqsypsTKRNGSKHHLTliipisaggallillvaalviYNHHLQRKRVRILNRNGSSLESADLIPMKENSKSDRFEPKLAQNKLLPGVSGYLGKPIVYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPksksssssgsVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIrevlkveekreerlrNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTETLERSWTSGLEAEEAFQFISPVTAR
Disordered region (IsUnstruct)
******SLQALFLLMTIHITAQSPAANGTDFSCSADSLPSCKTYVAYFAQSPEFLDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPIICGCTGNQYFANITYQIKKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLITYVWQPGDDVSQVGAKL***********EYRNFSEAVSLPVLIPV*******************HHLTLIIPISAGGALLILLVAALVIYNHHLQRKRVRILN******************************KLLPGVSGYLGKPIVYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL***********SVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTETLERSWTS*****************
Disordered Region (DISOPRED)
***SSLSLQALFLLMTIHITAQSPAANGTDFSCSADSLPSCKTYVAYFAQSPEFLDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPIICGCTGNQYFANITYQIKKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLITYVWQPGDDVSQVGAKLNASSAAIETENEYRNF*EAVSLPV*****************************IPISAGGALLILLVAALVIYNHH*****************************************************IVYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSK*****GSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELLSGKKAT**********LWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL******************************
Disordered Region (DISEMBL)
MAISSLSLQALFLLMTIHITAQSPAANGTDFSCSADSLPSCKTYVAYFAQSPEFLDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPIICGCTGNQYFANITYQIKKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLITYVWQPGDDVSQVGAKLNASSAAIETENEYRNFSEAVSLPVLIPVSQLPS************SKHHLTLIIPISAGGALLILLVAALVIYNHHLQRKRVRILNRNGSSLESADLIPMKENSKSDRFEPKLAQNKLLPGVSGYLGKPIVYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH**********SVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTETLERSWTSGLEAEEAFQFISPVTAR
Disordered Region (DISPRO)
MAISSLSLQALFLLMTIHITAQSPAANGTDFSCSADSLPSCKTYVAYFAQSPEFLDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPIICGCTGNQYFANITYQIKKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLITYVWQPGDDVSQVGAKLNASSAAIETENEYRNFSEAVSLPVLIPVSQLPSLSQSYPSTKRNGSKHHLTLIIPISAGGALLILLVAALVIYNHHLQRKRV*****************************************GYLGKPIVYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS*******SVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE*************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAISSLSLQALFLLMTIHITAQSPAANGTDFSCSADSLPSCKTYVAYFAQSPEFLDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPIICGCTGNQYFANITYQIKKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLITYVWQPGDDVSQVGAKLNASSAAIETENEYRNFSEAVSLPVLIPVSQLPSLSQSYPSTKRNGSKHHLTLIIPISAGGALLILLVAALVIYNHHLQRKRVRILNRNGSSLESADLIPMKENSKSDRFEPKLAQNKLLPGVSGYLGKPIVYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTETLERSWTSGLEAEEAFQFISPVTAR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	615	2.2.26 [Sep-21-2011]
A8R7E6	617	Chitin elicitor receptor	yes	no	0.764	0.761	0.307	2e-57
O64825	612	LysM domain receptor-like	no	no	0.876	0.880	0.284	4e-54
Q9SGI7	654	Protein LYK2 OS=Arabidops	no	no	0.852	0.801	0.292	1e-53
O22808	664	Protein LYK5 OS=Arabidops	no	no	0.429	0.397	0.380	1e-46
D7UPN3	605	Chitin elicitor receptor	no	no	0.834	0.847	0.288	1e-42
F4IB81	651	LysM domain receptor-like	no	no	0.430	0.407	0.349	5e-38
Q7X8C5	748	Wall-associated receptor	no	no	0.489	0.402	0.290	9e-34
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.391	0.192	0.342	1e-33
Q9FIJ6	751	Serine/threonine-protein	no	no	0.666	0.545	0.282	2e-33
Q9SGY7	718	Putative proline-rich rec	no	no	0.572	0.490	0.280	4e-33

>sp|A8R7E6|CERK1_ARATH Chitin elicitor receptor kinase 1 OS=Arabidopsis thaliana GN=CERK1 PE=1 SV=1

 Score =  224 bits (570), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 167/543 (30%), Positives = 272/543 (50%), Gaps = 73/543 (13%)

Query: 90  LLVPIICGCTGNQYFA-NITYQIKKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQI 148
           +LVP  C C    +   N +Y +++ D+Y  V+I+++ NLT   ++   NP    N+  +
Sbjct: 85  VLVPFPCECQPGDFLGHNFSYSVRQEDTYERVAISNYANLTTMESLQARNPFPATNI-PL 143

Query: 149 GVKVTFPLFCKCPSKTNMEDGIENLITYVWQPGDDVSQVGAKLNASSAAIETENEYRNFS 208
              +   + C C  ++  +D     +TY  +P D +S +      S+  ++  N   NF+
Sbjct: 144 SATLNVLVNCSCGDESVSKD-FGLFVTYPLRPEDSLSSIARSSGVSADILQRYNPGVNFN 202

Query: 209 EA---VSLPVLIPVSQLPSLSQSYPSTKRNGSKHHLTLIIPISAGGALLILLVAALVIYN 265
                V +P   P    P     + S+K++G    +   I I   G ++ LL+   ++Y 
Sbjct: 203 SGNGIVYVPGRDPNGAFPP----FKSSKQDGVGAGVIAGIVI---GVIVALLLILFIVYY 255

Query: 266 HHLQRKRVRILNRNGSSLESADLIPMKENSKSDRFEPKLAQNKLL------PGVSGY-LG 318
            + + K        G S  S+  IP+  ++K+D       Q+  L      PG++   + 
Sbjct: 256 AYRKNKS------KGDSFSSS--IPL--STKADHASSTSLQSGGLGGAGVSPGIAAISVD 305

Query: 319 KPIVYEIEVIMESTMNLSEHYSIGK----SVYRATIDGKVLAVKKIKEDVTE----ELRI 370
           K + + +E + ++T N +  + IG+    +VY A + G+  A+KK+  + ++    EL++
Sbjct: 306 KSVEFSLEELAKATDNFNLSFKIGQGGFGAVYYAELRGEKAAIKKMDMEASKQFLAELKV 365

Query: 371 LQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQR 430
           L R++H NLV+L+G     +G+ FLVYEY ENG+L + LH   +          L W++R
Sbjct: 366 LTRVHHVNLVRLIGYCV--EGSLFLVYEYVENGNLGQHLHGSGREP--------LPWTKR 415

Query: 431 LRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------ 478
           +++ALD A GL+Y+HEH  P  VHRDI++ NI +D +F+AK+A+F L             
Sbjct: 416 VQIALDSARGLEYIHEHTVPVYVHRDIKSANILIDQKFRAKVADFGLTKLTEVGGSATRG 475

Query: 479 --------APAT--NDVMPKFDVFAFGVVLLELLSGKKA-TRTTEN-GKTAVLWKEIREV 526
                   AP T   +V  K DV+AFGVVL EL+S K A  + TE  G+   L     E 
Sbjct: 476 AMGTFGYMAPETVYGEVSAKVDVYAFGVVLYELISAKGAVVKMTEAVGEFRGLVGVFEES 535

Query: 527 LKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLT 586
            K E  +EE LR  +DP L   YP D    +A L +ACT + +  RP+M  +V  LS L 
Sbjct: 536 FK-ETDKEEALRKIIDPRLGDSYPFDSVYKMAELGKACTQENAQLRPSMRYIVVALSTLF 594

Query: 587 QST 589
            ST
Sbjct: 595 SST 597

Lysin motif (LysM) receptor kinase that functions as a cell surface receptor in chitin elicitor (chitooligosaccharides) signaling leading to innate immunity toward both biotic and abiotic stresses (e.g. tolerance to salinity, heavy-metal stresses, and Botrytis cinerea infection). Recognizes microbe-derived N-acetylglucosamine (NAG)-containing ligands. Involved in the resistance to pathogenic fungi Alternaria brassicicola and Erysiphe cichoracearum, probably by sensing microbe-associated molecular patterns (MAMP) and pathogen-associated molecular patterns (PAMP). Plays an essential role in detecting peptidoglycans (e.g. PGNs) and restricting bacterial growth. Target of the bacterial type III effector E3-ligase protein hopAB2/avrPtoB of Pseudomonas syringae pv. tomato DC3000 that mediates ubiquitination and subsequent proteolysis, thus blocking all defense responses by suppressing PAMP-triggered immunity (PTI).
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|O64825|LYK4_ARATH LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana GN=LYK4 PE=1 SV=1

 Score =  213 bits (542), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 184/647 (28%), Positives = 309/647 (47%), Gaps = 108/647 (16%)

Query: 11  LFLLMTI--HITAQSPAANGTDFSCS-ADSLPS------------CKTYVAYFAQSPEFL 55
           +F+L+++    TAQ P    +   CS +D+  S            C+ YV  F  +P F 
Sbjct: 10  VFILLSLSSFATAQQPYVGISTTDCSVSDNTTSVFGYSCNGLNKTCQAYVI-FRSTPSFS 68

Query: 56  DLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPIICGCTGNQYFANITYQIKKGD 115
            +++IS LF V   S+  + N  S  T     Q +++P+ C CTG+   +NITY I+  D
Sbjct: 69  TVTSISSLFSVDP-SLVSSLNDASPSTSFPSGQQVIIPLTCSCTGDDSQSNITYTIQPND 127

Query: 116 SYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFPLFCKCPSKTNM-EDGIENLI 174
           SY+ ++  + + L+   A+ + N  ++   L  G+++  P+ C CP+   + EDG++ L+
Sbjct: 128 SYFAIANDTLQGLSTCQALAKQN-NVSSQSLFPGMRIVVPIRCACPTAKQINEDGVKYLM 186

Query: 175 TYVWQPGDDVSQVGAKLNASSAAIETENEYRNFSEAVSLP---VLIPVSQLPSLSQSY-- 229
           +Y     D ++ +  +    ++     NE  +F  +   P   +LIP+   P+ + S   
Sbjct: 187 SYTVVFEDTIAIISDRFGVETSKTLKANE-MSFENSEVFPFTTILIPLVNPPANTNSLIP 245

Query: 230 ---------------PSTKRNGSKHHLTLIIPISAGGALLILLVAALVIYNHHLQRKRVR 274
                              R   K      +    GGAL++ ++ A +     L +K+ +
Sbjct: 246 PPPPPPPQSVSPPPLSPDGRKSKKKTWVYALAGVLGGALVLSVIGAAIFC---LSKKKTK 302

Query: 275 ILNRNGSSLESADLIPMKENSKSDR-FEPKLAQNKLLPGVSGYLGKPI-VYEIEVIMEST 332
              +  +   + D    K+   SD+ F+P       L G+SG + + + VY+   +  +T
Sbjct: 303 TQTQEETG--NLDSFMGKKPPMSDQEFDP-------LDGLSGMVVESLKVYKFHELQSAT 353

Query: 333 MNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGN 392
            + +   SIG S Y   I+G    +KKI+ + +EE+ +L ++NH N+++L G     +G+
Sbjct: 354 SDFTSSSSIGGSGYIGKINGDGAMIKKIEGNASEEVNLLSKLNHLNIIRLSGFCFH-EGD 412

Query: 393 RFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSI 452
            +LVYE+A NGSL +W+H  +KS         L+ +Q+L++ALD+A GL Y+H  A P  
Sbjct: 413 WYLVYEHASNGSLSEWIH-TTKS--------LLSLTQKLQIALDIATGLNYLHNFADPPY 463

Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLAAPATND-----------------------VMPKF 489
           VHRD+ +NN+ LD  F+AKI +   A   T D                       V  K 
Sbjct: 464 VHRDLNSNNVFLDLEFRAKIGSLGSARSTTEDFVLTKHVEGTRGYLAPEYLEHGLVSTKL 523

Query: 490 DVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKR-EERLRNWMDPNLESF 548
           DV+AFGVVLLE+++GK+A+          L KEI E   ++E     RL   +   L SF
Sbjct: 524 DVYAFGVVLLEIVTGKEASE---------LKKEIDEGKAIDEILIHGRL---LPEGLTSF 571

Query: 549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTETLERS 595
                   +  L   C     L+RP+M E V +LS +  +T+  E S
Sbjct: 572 --------VERLVVDCLKKDHLNRPSMDENVMSLSKILAATQNWEES 610

Lysin motif (LysM) receptor kinase that functions as a cell surface receptor in chitin elicitor (chitooligosaccharides) signaling leading to innate immunity. Recognizes microbe-derived N-acetylglucosamine (NAG)-containing ligands. Involved in the resistance to the pathogenic fungus Alternaria brassicicola and to the bacterial pathogen the bacterial pathogen Pseudomonas syringae pv tomato DC3000, probably by sensing microbe-associated molecular pattern (MAMP) and pathogen-associated molecular patterns (PAMP). May play a role in detecting peptidoglycans (e.g. PGNs) during bacterial growth.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SGI7|LYK2_ARATH Protein LYK2 OS=Arabidopsis thaliana GN=LYK2 PE=2 SV=1

 Score =  211 bits (538), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 179/612 (29%), Positives = 297/612 (48%), Gaps = 88/612 (14%)

Query: 26  ANGTDFSCSADSLPSCKTYVAYFAQSPEFLDLSNISDLFGVSRLSIARASNLVSEDTPLV 85
           A+   + C ++ L  C T+    A+ P F  LS++S   G+              D   V
Sbjct: 43  ASSFGYVCHSN-LQKCHTFAILRAKPP-FYSLSDLSRHLGLD------------ADDEYV 88

Query: 86  PK-QLLLVPIICGCTGNQYFANITYQIKKGDSYYLVSITSFENLTNWHAVLEMNPGINPN 144
           PK QLLL+PI C C G+ Y A++     KGD++  VS  S + LT   ++ E NP I+ +
Sbjct: 89  PKGQLLLIPIECRCNGSIYEASLIKNCVKGDTFRSVS-QSLQGLTTCLSIREKNPHISED 147

Query: 145 LLQIGVKVTFPLFCKCPSKTNMEDGIEN---LITYVWQPGDDVSQVGAKLNASSAAIETE 201
            L   +K+   + C CP     ++G+ N   L+TY     D VS +  + N +  AI + 
Sbjct: 148 KLGDNIKLRLAIRCSCP-----QEGVSNASFLVTYPVGVRDSVSSLAVRFNTTEDAIVSA 202

Query: 202 NEYRNFSEAVSL-PVLIPVSQLPSLSQSYPSTKRNGSKHH---LTLIIPISAGGALLILL 257
           N   N S  V L P LIP+   P   +   S KRN SK     + L+I +S+  A +  L
Sbjct: 203 N---NKSGVVPLKPALIPLDHKP---EKQGSRKRNPSKKKRSKMKLMIAVSSAIAGVCGL 256

Query: 258 VAALVIYNHHLQRKRVRILNRNGSSLESAD----LIPMKENSKSDR---FEPKLAQNKLL 310
           V  L+++ +   +K  +I  +    + + D     + +   + SD+   FE   +Q+  +
Sbjct: 257 VT-LMVFGYLHWKKETQIQTQTQKWISNKDPETRQLSLSIRTTSDKKISFEG--SQDGSI 313

Query: 311 PGVSGYLG-----KPI--VYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKED 363
                 +G     KP+  +Y  E + ++T N S    I  SVY  ++ GK LA+K++  D
Sbjct: 314 LDSHNTVGTTTPRKPVLEIYAFEELEKATENFSSSNHIKGSVYFGSLKGKDLAIKQVNAD 373

Query: 364 VTE--ELRILQRINH---ANLVKLMGVS-SDSQGNRFLVYEYAENGSLDKWLHPK--SKS 415
             +  +  +L   +H    N+++++G    +   + +LV+EYA NGSL  W+  K   K+
Sbjct: 374 EMKRFDFGLLNDQSHYYNHNVIRVLGTCFREIDQDSYLVFEYARNGSLWDWIQNKLAIKN 433

Query: 416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF 475
                   FL W QR+++  DVA  L+YMH   + + VH +I++ NI L+   + K+ NF
Sbjct: 434 QFIESCYCFLAWKQRIKICHDVAIALKYMH---RINYVHGNIKSRNIFLNEDLRGKVGNF 490

Query: 476 SLAAPATNDVM-----------PKFDVFAFGVVLLELLSGK--------KATRTTENGKT 516
            ++   TN++            P  D+FA+G++++E+LSG+        +   TT  G  
Sbjct: 491 GMSKCVTNELATEENLIESSLSPASDIFAYGIIVMEVLSGQTPDMLLGLQEVETTSLGTQ 550

Query: 517 AVL---WKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRP 573
                 W  +R +L  +EK    LR  MD  L   Y +D A  +A++AR CT +++ SRP
Sbjct: 551 ETFVSEWSRLRRLLGDKEK----LREVMDSTLGESYSVDSAFEIASIARDCTAEEAESRP 606

Query: 574 NMAEVVFNLSVL 585
           +  E+   +S L
Sbjct: 607 SAVEIAERVSRL 618

May recognize microbe-derived N-acetylglucosamine (NAG)-containing ligands.

Arabidopsis thaliana (taxid: 3702)

>sp|O22808|LYK5_ARATH Protein LYK5 OS=Arabidopsis thaliana GN=LYK5 PE=1 SV=1

 Score =  188 bits (477), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/305 (38%), Positives = 172/305 (56%), Gaps = 41/305 (13%)

Query: 322 VYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTE-ELRILQRINHANLV 380
           +Y    +  +T N S+   I  SVYRATI+G   AVK IK DV+  E+ +L+++NH+N++
Sbjct: 359 LYRFNDLQSATSNFSDENRIKGSVYRATINGDDAAVKVIKGDVSSSEINLLKKLNHSNII 418

Query: 381 KLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANG 440
           +L G     +G  +LV+EY+ENGS+  WLH   K S        LTW QR+ +A DVA  
Sbjct: 419 RLSGFCI-REGTSYLVFEYSENGSISDWLHSSGKKS--------LTWKQRVEIARDVAEA 469

Query: 441 LQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------------------- 478
           L Y+H +  P  +H+++ + NI LDS F+AKIANF +A                      
Sbjct: 470 LDYLHNYITPPHIHKNLESTNILLDSNFRAKIANFGVARILDEGDLDLQLTRHVEGTQGY 529

Query: 479 -AP--ATNDVM-PKFDVFAFGVVLLELLSGKKAT----RTTENGKTAVLWKEIREVLKVE 530
            AP    N V+  K DVFAFGV +LELLSG++A     +     +  +L K I  VL  E
Sbjct: 530 LAPEYVENGVITSKLDVFAFGVAVLELLSGREAVTIHKKKEGEEEVEMLCKVINSVLGGE 589

Query: 531 EKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE 590
             R E+L+ +MDP+L + YP++ A ++A LA++C      SRP++ +V+  LS++  S+ 
Sbjct: 590 NVR-EKLKEFMDPSLGNEYPLELAYTMAQLAKSCVATDLNSRPSVTQVLTTLSMIVSSSI 648

Query: 591 TLERS 595
             E S
Sbjct: 649 DWEPS 653

May recognize microbe-derived N-acetylglucosamine (NAG)-containing ligands.

Arabidopsis thaliana (taxid: 3702)

>sp|D7UPN3|CERK1_ORYSJ Chitin elicitor receptor kinase 1 OS=Oryza sativa subsp. japonica GN=CERK1 PE=1 SV=1

 Score =  174 bits (442), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 175/606 (28%), Positives = 273/606 (45%), Gaps = 93/606 (15%)

Query: 40  SCKTYVA--YFAQSPEFLDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPIICG 97
            C   +A  YF++      ++ I  + G    ++   +  ++    +V    +LVP  C 
Sbjct: 29  GCSLAIAAYYFSEGSNLTFIATIFAIGGGGYQALLPYNPAITNPDYVVTGDRVLVPFPCS 88

Query: 98  CTG------NQYFAN-ITYQI----KKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLL 146
           C G      + + A  I Y +      GD+Y  V+  ++ +LT   A LE      P  +
Sbjct: 89  CLGLPAAPASTFLAGAIPYPLPLPRGGGDTYDAVA-ANYADLTT-AAWLEATNAYPPGRI 146

Query: 147 QIG-VKVTFPLFCKCPS-KTNMEDGIENLITYVWQPGDDVSQVGAKLNASSAA-IETENE 203
             G  +V   + C C   + +   G+   +TY    G+ +  V A+   SS A +E    
Sbjct: 147 PGGDGRVNVTINCSCGDERVSPRYGL--FLTYPLWDGETLESVAAQYGFSSPAEMELIRR 204

Query: 204 YRNFSEAVSLP--VLIPVSQLPSLSQSYPSTKRNGSKHHLTLIIPISAGGALLILLVAAL 261
           Y      VS    V IPV      + SY   K  G  + L+       GGA+  +++A +
Sbjct: 205 YNPGMGGVSGKGIVFIPVKDP---NGSYHPLKSGGMGNSLS-------GGAIAGIVIACI 254

Query: 262 VIYNHHLQRKRVRILNRNGSSLESADLIPMKENSKSDRFEPKLAQNKLLPGVSGYLGKPI 321
            I+   +    + I+         A   P  E +        L       G+   + + I
Sbjct: 255 AIF---IVAIWLIIMFYRWQKFRKATSRPSPEETS------HLDDASQAEGIK--VERSI 303

Query: 322 VYEIEVIMESTMNLSEHYSIGK----SVYRATIDGKVLAVKKIKEDVTEE----LRILQR 373
            +  E I  +T   S  + IG+    SVY A + G+  A+KK+    T+E    L++L  
Sbjct: 304 EFSYEEIFNATQGFSMEHKIGQGGFGSVYYAELRGEKTAIKKMGMQATQEFLAELKVLTH 363

Query: 374 INHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRV 433
           ++H NLV+L+G   ++    FLVYE+ +NG+L + L     +         L+W+ R+++
Sbjct: 364 VHHLNLVRLIGYCVEN--CLFLVYEFIDNGNLSQHLQRTGYAP--------LSWATRVQI 413

Query: 434 ALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA--------------- 478
           ALD A GL+Y+HEH  P  VHRDI++ NI LD  F+AKIA+F LA               
Sbjct: 414 ALDSARGLEYLHEHVVPVYVHRDIKSANILLDKDFRAKIADFGLAKLTEVGSMSQSLSTR 473

Query: 479 --------APAT--NDVMPKFDVFAFGVVLLELLSGKKA----TRTTENGKTAVLWKEIR 524
                    P     +V PK DV+AFGVVL ELLS K+A    + +    K  V   E  
Sbjct: 474 VAGTFGYMPPEARYGEVSPKVDVYAFGVVLYELLSAKQAIVRSSESVSESKGLVFLFE-- 531

Query: 525 EVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSV 584
           E L      E  L   +DP+L+  YP+D AL +A+LA++CT ++   RP M  VV  L  
Sbjct: 532 EALSAPNPTEA-LDELIDPSLQGDYPVDSALKIASLAKSCTHEEPGMRPTMRSVVVALMA 590

Query: 585 LTQSTE 590
           LT +T+
Sbjct: 591 LTANTD 596

Plays an essential role in detecting peptidoglycans (e.g. PGNs) and restricting bacterial growth. Recognizes microbe-derived N-acetylglucosamine (NAG)-containing ligands (By similarity). Lysin motif (LysM) receptor kinase required as a cell surface receptor for chitin elicitor (chitooligosaccharides) signaling leading to innate immunity in response to both biotic and abiotic stresses. Involved in the resistance to pathogenic fungi, probably by sensing microbe-associated molecular patterns (MAMP) and pathogen-associated molecular patterns (PAMP).

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3 OS=Arabidopsis thaliana GN=LYK3 PE=2 SV=1

 Score =  159 bits (403), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 110/315 (34%), Positives = 168/315 (53%), Gaps = 50/315 (15%)

Query: 319 KPIVYEIEVIMESTMNLSEHYSIGK----SVYRATIDGKVLAVKKIKEDVTEE----LRI 370
           KP+V+  E I  +T   S+   +G     SVY   +  + +AVK++    T+E    +++
Sbjct: 325 KPMVFTYEEIRAATDEFSDSNLLGHGNYGSVYFGLLREQEVAVKRMTATKTKEFAAEMKV 384

Query: 371 LQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH-PKSKSSSSSGSVIFLTWSQ 429
           L +++H+NLV+L+G ++ +    F+VYEY   G L   LH P+SK ++       L+W  
Sbjct: 385 LCKVHHSNLVELIGYAA-TVDELFVVYEYVRKGMLKSHLHDPQSKGNTP------LSWIM 437

Query: 430 RLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------- 478
           R ++ALD A GL+Y+HEH +   VHRDI+T+NI LD  F+AKI++F LA           
Sbjct: 438 RNQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDEAFRAKISDFGLAKLVEKTGEGEI 497

Query: 479 ------------AP---ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE-----NGKTAV 518
                       AP   +      K D++AFGVVL E++SG++A   TE     N +   
Sbjct: 498 SVTKVVGTYGYLAPEYLSDGLATSKSDIYAFGVVLFEIISGREAVIRTEAIGTKNPERRP 557

Query: 519 LWKEIREVLK--VEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMA 576
           L   +  VLK   +      L+ ++DPN+   YP D    +ATLA+ C  D  + RPNM 
Sbjct: 558 LASIMLAVLKNSPDSMNMSSLKEFVDPNMMDLYPHDCLFKIATLAKQCVDDDPILRPNMK 617

Query: 577 EVVFNLS-VLTQSTE 590
           +VV +LS +L  S E
Sbjct: 618 QVVISLSQILLSSIE 632

Putative Lysin motif (LysM) receptor kinase that may recognize microbe-derived N-acetylglucosamine (NAG)-containing ligands.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q7X8C5|WAKLB_ARATH Wall-associated receptor kinase-like 2 OS=Arabidopsis thaliana GN=WAKL2 PE=2 SV=1

 Score =  145 bits (366), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 111/382 (29%), Positives = 182/382 (47%), Gaps = 81/382 (21%)

Query: 250 GGALLILLVAALVIYNHHLQRKRV----RILNRNGSSLESADLIPMKENSKSDRFEPKLA 305
           G ALL+       +Y    +R+++    +   RNG  L    L   + N +  R      
Sbjct: 349 GSALLLFAFGIFGLYKFVQKRRKLIRMRKFFRRNGGMLLKQQLARKEGNVEMSR------ 402

Query: 306 QNKLLPGVSGYLGKPIVYEIEVIMESTMNLSEHYSIGK----SVYRAT-IDGKVLAVKKI 360
                           ++    + ++T N +++  +G+    +VY+   +DG+++AVK+ 
Sbjct: 403 ----------------IFSSHELEKATDNFNKNRVLGQGGQGTVYKGMLVDGRIVAVKRS 446

Query: 361 K-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS 413
           K       E+   E+ +L +INH N+VKL+G   +++    LVYE+  NG L K LH +S
Sbjct: 447 KAVDEDRVEEFINEVVVLAQINHRNIVKLLGCCLETE-VPVLVYEFVPNGDLCKRLHDES 505

Query: 414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIA 473
              +       +TW  RL +A+++A  L Y+H  A   I HRDI+T NI LD R +AK++
Sbjct: 506 DDYT-------MTWEVRLHIAIEIAGALSYLHSAASFPIYHRDIKTTNILLDERNRAKVS 558

Query: 474 NFSLAAPATND--------------VMPKF----------DVFAFGVVLLELLSGKKAT- 508
           +F  +   T D              V P++          DV++FGVVL+ELL+G+K + 
Sbjct: 559 DFGTSRSVTIDQTHLTTQVAGTFGYVDPEYFQSSKFTEKSDVYSFGVVLVELLTGEKPSS 618

Query: 509 --RTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTM 566
             R+ EN   A  +        VE  +E R+ + +D  ++    +D  +S+A LAR C  
Sbjct: 619 RVRSEENRGLAAHF--------VEAVKENRVLDIVDDRIKDECNMDQVMSVANLARRCLN 670

Query: 567 DKSLSRPNMAEVVFNLSVLTQS 588
            K   RPNM EV   L ++  S
Sbjct: 671 RKGKKRPNMREVSIELEMIRSS 692

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  144 bits (364), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/292 (34%), Positives = 151/292 (51%), Gaps = 51/292 (17%)

Query: 326  EVIMESTMNLSEHYSIGKS----VYRATID-GKVLAVKKI--KEDV------TEELRILQ 372
            E IME+T NLSE + IG      VY+A ++ G+ +AVKKI  K+D+      + E++ L 
Sbjct: 942  EDIMEATHNLSEEFMIGSGGSGKVYKAELENGETVAVKKILWKDDLMSNKSFSREVKTLG 1001

Query: 373  RINHANLVKLMG-VSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRL 431
            RI H +LVKLMG  SS S+G   L+YEY +NGS+  WLH           +  L W  RL
Sbjct: 1002 RIRHRHLVKLMGYCSSKSEGLNLLIYEYMKNGSIWDWLHEDKPVLEKKKKL--LDWEARL 1059

Query: 432  RVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND------- 484
            R+A+ +A G++Y+H    P IVHRDI+++N+ LDS  +A + +F LA   T +       
Sbjct: 1060 RIAVGLAQGVEYLHHDCVPPIVHRDIKSSNVLLDSNMEAHLGDFGLAKVLTENCDTNTDS 1119

Query: 485  ----------VMPKF----------DVFAFGVVLLELLSGKKATRTTENGKT-AVLWKEI 523
                      + P++          DV++ G+VL+E+++GK  T +    +   V W E 
Sbjct: 1120 NTWFACSYGYIAPEYAYSLKATEKSDVYSMGIVLMEIVTGKMPTDSVFGAEMDMVRWVET 1179

Query: 524  REVLKVEEKREERLRNWMDPNLESFYPI--DGALSLATLARACTMDKSLSRP 573
               L+V     ++L   +DP L+   P   D A  +  +A  CT      RP
Sbjct: 1180 H--LEVAGSARDKL---IDPKLKPLLPFEEDAACQVLEIALQCTKTSPQERP 1226

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIJ6|ACCR4_ARATH Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana GN=CCR4 PE=1 SV=1

 Score =  144 bits (363), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 144/510 (28%), Positives = 225/510 (44%), Gaps = 100/510 (19%)

Query: 155 PLFCKCPSK--TNMEDGIENLITYVWQPGDD-VSQVGAKLNASSAAIETENEYRNFSEAV 211
           P+FC   ++  T +  G EN  + V+ P    +SQV             E  YR  S + 
Sbjct: 274 PMFCGVATRNYTLICWGNENFKSGVFTPFQGLISQV-----VMPGPCRRECPYRPLSGSQ 328

Query: 212 SLPV-LIPVSQLPSLSQSYPSTKRNGSKHHL-----TLIIPISAGGALLILLVAALVIYN 265
           SL    + +  L      +P T+   SK+          + +   G   +LLV + +I+ 
Sbjct: 329 SLCGNELMICDLKRNDGEFPDTRAQNSKNKTWSRRNIAFLVVGCVGTFSLLLVISFLIFK 388

Query: 266 HHLQRKRVRILNRNGSSLESADLIPMKENSKSDRFEPKLAQNKLLPGVSGYLGKPIVYEI 325
            H    R R+   +   L+    I +          PKL +        G  G+ + + I
Sbjct: 389 SHC---RCRV--HDSGRLDDTRTIDI----------PKLEKRLCTLASLGNPGQLMEFSI 433

Query: 326 EVIMESTMNLSEHYSIG----KSVYRATI-DGKVLAVKKIK------------------- 361
           + +  +T   S  + +G     SVY+  + DG+ +A+K+ +                   
Sbjct: 434 DELALATDGFSVRFHLGIGSFGSVYQGVLSDGRHVAIKRAELTNPTLSGTTMRHRRADKD 493

Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH-PKSKSSSSSG 420
                EL  + R+NH NLV+L+G   D++  R LVYEY +NGSL   LH P+        
Sbjct: 494 SAFVNELESMSRLNHKNLVRLLGFYEDTE-ERILVYEYMKNGSLADHLHNPQFDP----- 547

Query: 421 SVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA-- 478
               L+W  RL +ALD A G+QY+HE   P ++HRDI+++NI LD+ + AK+++F L+  
Sbjct: 548 ----LSWQTRLMIALDAARGIQYLHEFIVPPVIHRDIKSSNILLDATWTAKVSDFGLSQM 603

Query: 479 APATND---------------VMPKF----------DVFAFGVVLLELLSGKKATRTTEN 513
            P   D               + P++          DV++FGVVLLELLSG KA    E+
Sbjct: 604 GPTEEDDVSHLSLHAAGTLGYIDPEYYKFQQLTTKSDVYSFGVVLLELLSGHKAIHNNED 663

Query: 514 GKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRP 573
                L + +   + ++E    R+ +   P   + Y I+    +  LA  C M  S  RP
Sbjct: 664 ENPRNLVEYVVPYILLDEA--HRILDQRIPP-PTPYEIEAVAHVGYLAAECLMPCSRKRP 720

Query: 574 NMAEVVFNL-----SVLTQ-STETLERSWT 597
           +M EVV  L     + LT   TET+ RS T
Sbjct: 721 SMVEVVSKLESALAACLTAPKTETVSRSNT 750

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SGY7|PEK11_ARATH Putative proline-rich receptor-like protein kinase PERK11 OS=Arabidopsis thaliana GN=PERK11 PE=2 SV=2

 Score =  143 bits (361), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 125/445 (28%), Positives = 203/445 (45%), Gaps = 93/445 (20%)

Query: 231 STKRNGSKHHLTLIIPISAGGALLILLVAALVIYNHHLQRK------------------- 271
           S + N S +    +I I   G L+IL +A  V +    Q+K                   
Sbjct: 250 SQQSNESNYTEKTVIGIGIAGVLVILFIAG-VFFVRRKQKKGSSSPRSNQYLPPANVSVN 308

Query: 272 -------RVRILNRNGSSLESADLIPMKENSKSDRFEPKLAQNKLLPGVSGYLGKPIVYE 324
                  R +  N N S+  S+       N K  R  P  A    + G S      I + 
Sbjct: 309 TEGFIHYRQKPGNGNSSAQNSSPDTNSLGNPKHGRGTPDSA----VIGTS-----KIHFT 359

Query: 325 IEVIMESTMNLSEHYSIGKS----VYRATI-DGKVLAVKKIK-------EDVTEELRILQ 372
            E + + T    + + +G+     VY+  + +GK +A+K++K        +   E+ I+ 
Sbjct: 360 YEELSQITEGFCKSFVVGEGGFGCVYKGILFEGKPVAIKQLKSVSAEGYREFKAEVEIIS 419

Query: 373 RINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLR 432
           R++H +LV L+G     Q +RFL+YE+  N +LD  LH K+        +  L WS+R+R
Sbjct: 420 RVHHRHLVSLVGYCISEQ-HRFLIYEFVPNNTLDYHLHGKN--------LPVLEWSRRVR 470

Query: 433 VALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA-------------- 478
           +A+  A GL Y+HE   P I+HRDI+++NI LD  F+A++A+F LA              
Sbjct: 471 IAIGAAKGLAYLHEDCHPKIIHRDIKSSNILLDDEFEAQVADFGLARLNDTAQSHISTRV 530

Query: 479 -------AP---ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE--NGKTAVLWKEIREV 526
                  AP   ++  +  + DVF+FGVVLLEL++G+K   T++    ++ V W   R +
Sbjct: 531 MGTFGYLAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDTSQPLGEESLVEWARPRLI 590

Query: 527 LKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVF------ 580
             +E+     +   +DP LE+ Y       +   A +C    +L RP M +VV       
Sbjct: 591 EAIEKG---DISEVVDPRLENDYVESEVYKMIETAASCVRHSALKRPRMVQVVRALDTRD 647

Query: 581 NLSVLTQSTETLE-RSWTSGLEAEE 604
           +LS LT   +  + R + SG  + E
Sbjct: 648 DLSDLTNGVKVGQSRVYDSGQYSNE 672

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	615
255585150	620	serine-threonine protein kinase, plant-t	0.965	0.958	0.660	0.0
359476733	608	PREDICTED: probable receptor-like protei	0.960	0.972	0.663	0.0
297735222	590	unnamed protein product [Vitis vinifera]	0.931	0.971	0.655	0.0
357966797	614	Nod factor perception protein [Parasponi	0.980	0.982	0.622	0.0
224094680	601	predicted protein [Populus trichocarpa]	0.960	0.983	0.614	0.0
299481062	598	Nod-factor receptor 5A [Glycine max]	0.946	0.973	0.583	0.0
356537980	598	PREDICTED: Nod factor receptor protein [	0.946	0.973	0.583	0.0
299481064	598	Nod-factor receptor 5A [Glycine max]	0.946	0.973	0.581	0.0
37651066	594	SYM10 protein [Pisum sativum] gi|3765106	0.954	0.988	0.556	0.0
37651070	594	SYM10 protein [Pisum sativum] gi|3765107	0.954	0.988	0.554	0.0

>gi|255585150|ref|XP_002533280.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526905|gb|EEF29112.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  796 bits (2057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/604 (66%), Positives = 476/604 (78%), Gaps = 10/604 (1%)

Query: 16  TIHITAQSPAANGTDFSCSADSLPS-CKTYVAYFAQSPEFLDLSNISDLFGVSRLSIARA 74
           T ++TAQSP   GT+FSCS D LPS C+TYVAY+AQ P FL+L NISDLF VSRLSIA A
Sbjct: 23  TTYVTAQSP--QGTNFSCSVD-LPSPCQTYVAYYAQPPNFLNLGNISDLFAVSRLSIASA 79

Query: 75  SNLVSEDTPLVPKQLLLVPIICGCTGNQYFANITYQIKKGDSYYLVSITSFENLTNWHAV 134
           SNLVSED PL+P QLLLVPI CGCTGN  FANITYQIK GDS+Y VS T FENL  W AV
Sbjct: 80  SNLVSEDIPLMPNQLLLVPITCGCTGNSSFANITYQIKPGDSFYFVSTTYFENLAKWQAV 139

Query: 135 LEMNPGINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLITYVWQPGDDVSQVGAKLNAS 194
              NP ++P LL  G KV FPLFCKCPSK  M+ GI+ LITYVWQP DD+ +VGAK NAS
Sbjct: 140 ESFNPNLDPTLLHPGDKVVFPLFCKCPSKNQMKHGIQYLITYVWQPEDDIFKVGAKFNAS 199

Query: 195 SAAIETENEYRNFSEAVSLPVLIPVSQLPSLSQSYPSTKRNGSKHHLTLIIPISAGGALL 254
              I  +N Y +FS AV  P+LIPV+Q+P LSQ  PS  +  S+HHL +II  S  GALL
Sbjct: 200 PHDIAIQNNYWDFSTAVHHPLLIPVTQMPILSQPSPSWPQR-SEHHLVIIIVTSVAGALL 258

Query: 255 ILLVAALVIYNH--HLQRKRVRILNRNGSSLESADLIPMKENSKSDRFEPKLAQNKLLPG 312
           I L+ A +++ H    ++K+   L+RNGS LE+ DL+ +KE  K   FEPK+ Q+KLLPG
Sbjct: 259 IFLLVAFLVHAHCSCKKKKKTMTLHRNGSCLETTDLLQIKEQGKYRSFEPKIIQDKLLPG 318

Query: 313 VSGYLGKPIVYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQ 372
           VSGYLGKPI+Y+I+ I+ +TM+L EHY IG SVYRA I+G+VLAVKK K D+TEEL ILQ
Sbjct: 319 VSGYLGKPIMYDIKEILLATMDLHEHYRIGGSVYRANINGQVLAVKKTKVDITEELNILQ 378

Query: 373 RINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLR 432
           ++NHANLVKLMG+SS++ G+ FLVYEYAENGSLDKWLHP  K +SSS SV FL+WSQRL+
Sbjct: 379 KVNHANLVKLMGISSNADGDCFLVYEYAENGSLDKWLHP--KPASSSSSVAFLSWSQRLQ 436

Query: 433 VALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVF 492
           +ALDVA+GLQYMHEH QP++VH DIRT+NI LDSRFKAKIANFS+A   T+ ++ K DVF
Sbjct: 437 IALDVASGLQYMHEHIQPTVVHMDIRTSNILLDSRFKAKIANFSVAKLTTDSMLQKVDVF 496

Query: 493 AFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPID 552
           AFGVVLLELL GKKA  T ENG+  +LWKE++ V++V EKR ERL+  MDPNLE+FYPID
Sbjct: 497 AFGVVLLELLCGKKAMVTNENGEIVLLWKEMKGVMEVAEKRAERLKKRMDPNLENFYPID 556

Query: 553 GALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS-TETLERSWTSGLEAEEAFQFISP 611
            ALSLA LAR CT++KS +RP+MAE+VFNL+VLTQS +ETLERSWTSGLEAEE  Q  SP
Sbjct: 557 SALSLANLARVCTLEKSSARPSMAEIVFNLTVLTQSCSETLERSWTSGLEAEEDIQITSP 616

Query: 612 VTAR 615
           V AR
Sbjct: 617 VIAR 620

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476733|ref|XP_002269472.2| PREDICTED: probable receptor-like protein kinase At1g49730 [Vitis vinifera]

 Score =  795 bits (2054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/601 (66%), Positives = 477/601 (79%), Gaps = 10/601 (1%)

Query: 16  TIHITAQSPAANGTDFSCSADSLPSCKTYVAYFAQSPEFLDLSNISDLFGVSRLSIARAS 75
           T HITAQSPA   T+FSC+ DS  SC+TYV Y AQ+P FLD+ NISDLFG+SRLSIA AS
Sbjct: 17  TNHITAQSPATPVTNFSCTTDSPASCQTYVIYRAQAPGFLDVGNISDLFGISRLSIAEAS 76

Query: 76  NLVSEDTPLVPKQLLLVPIICGCTGNQYFANITYQIKKGDSYYLVSITSFENLTNWHAVL 135
           NL SE+  L P QLLLVPI+C CTGN YFANITY+IK  DS+Y VS+T FENLTN++AV 
Sbjct: 77  NLASEEARLSPDQLLLVPILCSCTGNHYFANITYKIKTDDSFYFVSVTVFENLTNYNAVE 136

Query: 136 EMNPGINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLITYVWQPGDDVSQVGAKLNASS 195
            +NPG+ P  LQ+GV+V FPLFCKCPSK++ + GI  LITYVWQPGDDV  VG  L AS 
Sbjct: 137 ALNPGLEPTTLQVGVEVVFPLFCKCPSKSHSDKGINYLITYVWQPGDDVLLVGTNLKASP 196

Query: 196 AAIETENEYRNFSEAVSLPVLIPVSQLPSLSQSYPSTKRNGSKHHLTLIIPISAGGALLI 255
             I  EN   NFS +V  PVLIPVSQ P L+Q     +R  SK    L + +S  GALLI
Sbjct: 197 VDIRDENNNLNFSASVDQPVLIPVSQPPLLTQP----ERRASKGRWILALVLST-GALLI 251

Query: 256 LLVAALVIYNHHLQRKRVRILNRNGSSLESADLIPMKENSKSDRFEPKLAQNKLLPGVSG 315
            L+ +L++Y   +++K+   L+ + SSLE+ DLI +K+  + + FE K+ Q+KLLPGVSG
Sbjct: 252 FLLVSLLVYTGLIRKKKT--LDHSESSLETTDLIKVKKAPEDENFELKIIQDKLLPGVSG 309

Query: 316 YLGKPIVYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRIN 375
           YLGKPI+YE +VIME+TMNL+EHY IG SVYRATI+G+V+AVKK KED+TEELRILQ++N
Sbjct: 310 YLGKPIMYETKVIMEATMNLNEHYRIGGSVYRATINGQVVAVKKTKEDITEELRILQKVN 369

Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVAL 435
           H NLVKLMGVSSD+ GNRFLVYE+AENGSLDKWLHPK  S SS  SV FLTWSQR++VAL
Sbjct: 370 HGNLVKLMGVSSDADGNRFLVYEFAENGSLDKWLHPKPSSPSS--SVAFLTWSQRIQVAL 427

Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFG 495
           DVANGLQYMHEH QPS+VHRDIR NNI LDSRFKAKIANFS+A PA N +MPK DVFAFG
Sbjct: 428 DVANGLQYMHEHTQPSVVHRDIRANNILLDSRFKAKIANFSMATPAMNSMMPKVDVFAFG 487

Query: 496 VVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGAL 555
           VVLLELLSGKKA +   NG+  +LWK+IRE+L+VE+KRE+R+R WMDP LE+FYP DGAL
Sbjct: 488 VVLLELLSGKKAMQMRANGEIVMLWKDIREILEVEDKREDRIRRWMDPTLENFYPFDGAL 547

Query: 556 SLATLARACTMDKSLSRPNMAEVVFNLSVLTQ-STETLERSWTSGLEAEEAFQFISPVTA 614
           +LA LAR+CT +KS +RP+MAE+ FNLSVL+Q S+ETLERSWT G E EE  Q I+PV A
Sbjct: 548 NLAGLARSCTQEKSSARPSMAEIAFNLSVLSQTSSETLERSWTQGFEPEETIQIINPVIA 607

Query: 615 R 615
           R
Sbjct: 608 R 608

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735222|emb|CBI17584.3| unnamed protein product [Vitis vinifera]

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/601 (65%), Positives = 466/601 (77%), Gaps = 28/601 (4%)

Query: 16  TIHITAQSPAANGTDFSCSADSLPSCKTYVAYFAQSPEFLDLSNISDLFGVSRLSIARAS 75
           T HITAQSPA   T+FSC+ DS  SC+TYV Y AQ+P FLD+ NISDLFG+SRLSIA AS
Sbjct: 17  TNHITAQSPATPVTNFSCTTDSPASCQTYVIYRAQAPGFLDVGNISDLFGISRLSIAEAS 76

Query: 76  NLVSEDTPLVPKQLLLVPIICGCTGNQYFANITYQIKKGDSYYLVSITSFENLTNWHAVL 135
           NL SE+  L P QLLLVPI+C CTGN YFANITY+IK  DS+Y VS+T FENLTN++AV 
Sbjct: 77  NLASEEARLSPDQLLLVPILCSCTGNHYFANITYKIKTDDSFYFVSVTVFENLTNYNAVE 136

Query: 136 EMNPGINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLITYVWQPGDDVSQVGAKLNASS 195
            +NPG+ P  LQ+GV+V FPLFCKCPSK++ + GI  LITYVWQPGDDV  VG  L AS 
Sbjct: 137 ALNPGLEPTTLQVGVEVVFPLFCKCPSKSHSDKGINYLITYVWQPGDDVLLVGTNLKASP 196

Query: 196 AAIETENEYRNFSEAVSLPVLIPVSQLPSLSQSYPSTKRNGSKHHLTLIIPISAGGALLI 255
             I  EN   NFS +V  PVLIPVSQ P L+Q     +R  SK    L + +S  GALLI
Sbjct: 197 VDIRDENNNLNFSASVDQPVLIPVSQPPLLTQP----ERRASKGRWILALVLST-GALLI 251

Query: 256 LLVAALVIYNHHLQRKRVRILNRNGSSLESADLIPMKENSKSDRFEPKLAQNKLLPGVSG 315
            L+ +L++Y   +++K+   L+ + SSLE+ DLI                  KLLPGVSG
Sbjct: 252 FLLVSLLVYTGLIRKKKT--LDHSESSLETTDLI------------------KLLPGVSG 291

Query: 316 YLGKPIVYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRIN 375
           YLGKPI+YE +VIME+TMNL+EHY IG SVYRATI+G+V+AVKK KED+TEELRILQ++N
Sbjct: 292 YLGKPIMYETKVIMEATMNLNEHYRIGGSVYRATINGQVVAVKKTKEDITEELRILQKVN 351

Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVAL 435
           H NLVKLMGVSSD+ GNRFLVYE+AENGSLDKWLHPK  S SS  SV FLTWSQR++VAL
Sbjct: 352 HGNLVKLMGVSSDADGNRFLVYEFAENGSLDKWLHPKPSSPSS--SVAFLTWSQRIQVAL 409

Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFG 495
           DVANGLQYMHEH QPS+VHRDIR NNI LDSRFKAKIANFS+A PA N +MPK DVFAFG
Sbjct: 410 DVANGLQYMHEHTQPSVVHRDIRANNILLDSRFKAKIANFSMATPAMNSMMPKVDVFAFG 469

Query: 496 VVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGAL 555
           VVLLELLSGKKA +   NG+  +LWK+IRE+L+VE+KRE+R+R WMDP LE+FYP DGAL
Sbjct: 470 VVLLELLSGKKAMQMRANGEIVMLWKDIREILEVEDKREDRIRRWMDPTLENFYPFDGAL 529

Query: 556 SLATLARACTMDKSLSRPNMAEVVFNLSVLTQ-STETLERSWTSGLEAEEAFQFISPVTA 614
           +LA LAR+CT +KS +RP+MAE+ FNLSVL+Q S+ETLERSWT G E EE  Q I+PV A
Sbjct: 530 NLAGLARSCTQEKSSARPSMAEIAFNLSVLSQTSSETLERSWTQGFEPEETIQIINPVIA 589

Query: 615 R 615
           R
Sbjct: 590 R 590

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357966797|gb|AET97541.1| Nod factor perception protein [Parasponia andersonii]

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/610 (62%), Positives = 462/610 (75%), Gaps = 7/610 (1%)

Query: 11  LFLLMTIHITAQSPAANGTDFSCSADS-LPSCKTYVAYFAQSPEFLDLSNISDLFGVSRL 69
           L L    HI+AQSP    T+FSCS +S  PSCKTYVAYFAQ P F+DL +IS+LFGVS  
Sbjct: 7   LLLFFITHISAQSPPTLATNFSCSTNSSQPSCKTYVAYFAQPPLFMDLKSISNLFGVSPS 66

Query: 70  SIARASNLVSEDTPLVPKQLLLVPIICGCTGNQYFANITYQIKKGDSYYLVSITSFENLT 129
           SI+ ASNLVSE T L   QLLL+P+ C C G+ YF+N+TY I  GDSYYLVSI SFENLT
Sbjct: 67  SISEASNLVSESTKLTRGQLLLIPLSCSCNGSHYFSNVTYNITMGDSYYLVSIHSFENLT 126

Query: 130 NWHAVLEMNPGINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLITYVWQPGDDVSQVGA 189
           NW  V + NP +NPNLLQIG KV FPL+C CPSK++ ++GI+ LITYVWQP DD+ +V A
Sbjct: 127 NWPLVRDTNPTLNPNLLQIGTKVIFPLYCGCPSKSHSKNGIKYLITYVWQPSDDIYRVSA 186

Query: 190 KLNASSAAIETENEYRNFSEAVSLPVLIPVSQLPSLSQ-SYPSTKRNGS--KHHLTLIIP 246
             NAS   I  EN Y++F  AV  PVLIPVS++P+LSQ  YPS   + S  KH   LI  
Sbjct: 187 MFNASEVDIIIENNYQDFKAAVGYPVLIPVSRMPALSQPPYPSHSHHRSQLKHRWFLIAV 246

Query: 247 ISAGGALLILLVAALVIYNHHLQRKRVRILNRNGSSLESADLIPMKENSKSDRFEPKLAQ 306
           IS+ GALLIL +A  ++++  L  K+ + L+   SSLE+ DLI +K  SKSD  E +   
Sbjct: 247 ISSAGALLILFLATFLVHSIGLYEKK-KNLSHEESSLETTDLIQVKNFSKSDTLELQAKH 305

Query: 307 NKLLPGVSGYLGKPIVYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTE 366
           +KLLPGVS YLGKPI+YEI++IME+TMN ++ Y IG SVYRA I+G  LAVKK KE+VTE
Sbjct: 306 DKLLPGVSVYLGKPIMYEIKMIMEATMNFNDQYKIGGSVYRAMINGSFLAVKKAKENVTE 365

Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLT 426
           EL ILQ++NH NLVKLMG+S D  GN F VYEYAENGSLDKWL+P+S +S+SS SV  L+
Sbjct: 366 ELHILQKVNHGNLVKLMGISLDRDGNCFFVYEYAENGSLDKWLNPQSSTSTSS-SVGILS 424

Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM 486
           WSQRL +ALDVANGLQYMHEH QPSIVH++IRT+NI LDSRFKAKIANFS+A  A +  M
Sbjct: 425 WSQRLNIALDVANGLQYMHEHTQPSIVHKEIRTSNILLDSRFKAKIANFSMARSAASAGM 484

Query: 487 PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE 546
            K DVFAFGVVLL+LLSG+KA  T ENG+  +LWKE + VL+ EEKR E++R W+DP LE
Sbjct: 485 TKVDVFAFGVVLLKLLSGRKAMATRENGEIVMLWKEAKAVLEEEEKRAEKVREWIDPKLE 544

Query: 547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS-TETLERSWTSGLEAEEA 605
           SFYPIDGALSL TLA+ACT +K+ +RP++ EVVF+L VLTQS +ETLE SWT  LE E+ 
Sbjct: 545 SFYPIDGALSLMTLAKACTQEKASARPSIGEVVFSLCVLTQSFSETLEPSWTCTLEGEDV 604

Query: 606 FQFISPVTAR 615
            Q  SP+ AR
Sbjct: 605 VQITSPIVAR 614

Source: Parasponia andersonii

Species: Parasponia andersonii

Genus: Parasponia

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094680|ref|XP_002310198.1| predicted protein [Populus trichocarpa] gi|222853101|gb|EEE90648.1| predicted protein [Populus trichocarpa]

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/625 (61%), Positives = 463/625 (74%), Gaps = 34/625 (5%)

Query: 1   MAISSLS---LQALFLLMTI----HITAQSPAANGTDFSCSADSLPSCKTYVAYFAQSPE 53
           MAIS LS    QALF L+ +    ++TAQ+P   GT+FSC  DS  SC TY++Y AQ P+
Sbjct: 1   MAISLLSSFFTQALFFLVLVFFSTYVTAQAPP--GTNFSCPVDSPTSCPTYISYLAQPPD 58

Query: 54  FLDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPIICGCTGNQYFANITYQIKK 113
           FLDL  IS LFG+SR  IA ASNLVSEDTPL P QLLLVPI CGCTG+Q F NITYQI++
Sbjct: 59  FLDLGKISHLFGISRTLIASASNLVSEDTPLFPNQLLLVPIRCGCTGSQSFVNITYQIQQ 118

Query: 114 GDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENL 173
           GDS Y VS  SFENLT W  V  +N  + P LL  G +V FPLFCKCPS+T++E+GIE+L
Sbjct: 119 GDSIYSVSTISFENLTRWQEVEALNRSLTPTLLHAGDEVIFPLFCKCPSRTHLENGIEHL 178

Query: 174 ITYVWQPGDDVSQVGAKLNASSAAIETENEYRNFSEAVSLPVLIPVSQLPSLSQSYPSTK 233
           ITYVWQPGDD+ +V A LNAS   I  EN Y NF+ AV  P++IPVS+LP LSQ Y + +
Sbjct: 179 ITYVWQPGDDLKKVAAMLNASERNIVIENNYDNFNAAVYNPIVIPVSKLPVLSQPYLTPE 238

Query: 234 RNGSKHHLTLIIPISAGGALLILLVAALVIYNHHLQRKRVRILNRNGSSLESADLIPMKE 293
           R GSKH   +I+  S         + A +I+      K  + L+R GS LE++D      
Sbjct: 239 RRGSKHLWIVIVAASIASTFFTCPLVAFLIHK-RCSYKATKALDRTGSCLETSD------ 291

Query: 294 NSKSDRFEPKLAQNKLLPGVSGYLGKPIVYEIEVIMESTMNLSEHYSIGKSVYRATIDGK 353
                        +KLLPGV G L K I+YE++ IME TM+L EHY IG SVYRA I+G 
Sbjct: 292 ------------PDKLLPGVLGCLDKSIIYEVKAIMEGTMDLHEHYKIGGSVYRANINGC 339

Query: 354 VLAVKKIKEDVTEELRILQRINHANLVKLMGVS--SDSQGNRFLVYEYAENGSLDKWLHP 411
           VLAVKK K+DVTEEL+ILQ+++HANLVKLMG+S  SD +GNRFLVYEYAENGSLDKWLHP
Sbjct: 340 VLAVKKTKDDVTEELKILQKVSHANLVKLMGMSSESDREGNRFLVYEYAENGSLDKWLHP 399

Query: 412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAK 471
           KS+SSSS  SV FLTW QR++VALDVANGLQY+HEH QP  VH+DIRT+NI LDS F+AK
Sbjct: 400 KSESSSS--SVGFLTWKQRMQVALDVANGLQYLHEHTQPRTVHKDIRTSNILLDSTFRAK 457

Query: 472 IANFSLAAPATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE 531
           IANFS+A  AT+ +MPK DVF FGVVLLELLSGKKA  T E G+  +L +EI++VL++EE
Sbjct: 458 IANFSMARAATDSMMPKDDVFDFGVVLLELLSGKKAMVTKEKGEIVLLCREIKDVLEMEE 517

Query: 532 KREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST-E 590
           KREERLR WMDPNLE FYPID A+SLATLAR CT++KS  RP+MAE+VFNL+VLTQS+ E
Sbjct: 518 KREERLRKWMDPNLERFYPIDSAMSLATLARLCTLEKSSERPSMAEIVFNLTVLTQSSPE 577

Query: 591 TLERSWTSGLEAEEAFQFISPVTAR 615
           TLER WTS +E E+  + +SPVTAR
Sbjct: 578 TLER-WTSEVETEDFTRLVSPVTAR 601

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|299481062|gb|ADJ19106.1| Nod-factor receptor 5A [Glycine max]

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/610 (58%), Positives = 447/610 (73%), Gaps = 28/610 (4%)

Query: 8   LQALFLLMTIHITAQSPAANGTDFSCSADSLPSCKTYVAYFAQSPEFLDLSNISDLFGVS 67
           L  + +L + +I AQS   N T+FSC +DS PSC+TYV Y AQSP FL L+NIS++F  S
Sbjct: 15  LCLVIMLFSTNIVAQSQQDNRTNFSCPSDSPPSCETYVTYIAQSPNFLSLTNISNIFDTS 74

Query: 68  RLSIARASNLVSEDTPLVPKQLLLVPIICGCTGNQYFANITYQIKKGDSYYLVSITSFEN 127
            LSIARASNL   D  LV  Q+LLVP+ CGCTGN+ FANI+Y+I +GDS+Y V+ TS+EN
Sbjct: 75  PLSIARASNLEPMDDKLVKDQVLLVPVTCGCTGNRSFANISYEINQGDSFYFVATTSYEN 134

Query: 128 LTNWHAVLEMNPGINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLITYVWQPGDDVSQV 187
           LTNW AV+++NP ++PN L IG++V FPLFCKCPSK  ++  I+ LITYVW+PGD+VS V
Sbjct: 135 LTNWRAVMDLNPVLSPNKLPIGIQVVFPLFCKCPSKNQLDKEIKYLITYVWKPGDNVSLV 194

Query: 188 GAKLNASSAAIETENEY-RNFSEAVSLPVLIPVSQLPSLSQSYPSTKRNGSKHHLTLIIP 246
             K  AS   I +EN Y +NF+ A +LPVLIPV++LP L++S PS  R G    L +II 
Sbjct: 195 SDKFGASPEDIMSENNYGQNFTAANNLPVLIPVTRLPVLARS-PSDGRKGG-IRLPVIIG 252

Query: 247 ISAGGALLILLVAALVIYNHHLQRKRVRILNRNGSSLESADLIPMKENSKSDRFEPKLAQ 306
           IS G  LL+L++A L++Y + L   +++ LNR+ SS E+AD                   
Sbjct: 253 ISLGCTLLVLVLAVLLVYVYCL---KMKTLNRSASSAETAD------------------- 290

Query: 307 NKLLPGVSGYLGKPIVYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTE 366
            KLL GVSGY+ KP +YE + IME+TMNLSE   IG+SVY+A I+GKVLAVK+ KEDVTE
Sbjct: 291 -KLLSGVSGYVSKPTMYETDAIMEATMNLSEQCKIGESVYKANIEGKVLAVKRFKEDVTE 349

Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLT 426
           EL+ILQ++NH NLVKLMGVSSD+ GN F+VYEYAENGSLD+WL  KS  S +S S   LT
Sbjct: 350 ELKILQKVNHGNLVKLMGVSSDNDGNCFVVYEYAENGSLDEWLFSKS-CSDTSNSRASLT 408

Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM 486
           W QR+ +A+DVA GLQYMHEHA P IVHRDI ++NI LDS FKAKIANFS+A   TN +M
Sbjct: 409 WCQRISMAVDVAMGLQYMHEHAYPRIVHRDITSSNILLDSNFKAKIANFSMARTFTNPMM 468

Query: 487 PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE 546
           PK DVFAFGVVL+ELL+G+KA  T ENG+  +LWK+I ++   EE REERL+ WMDP LE
Sbjct: 469 PKIDVFAFGVVLIELLTGRKAVTTKENGEVVMLWKDIWKIFDQEENREERLKKWMDPKLE 528

Query: 547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ-STETLERSWTSGLEAEEA 605
           S+YPID ALSLA+LA  CT DKSLSRP +AE+V +LS+LTQ S  TLERS TS     EA
Sbjct: 529 SYYPIDYALSLASLAVNCTADKSLSRPTIAEIVLSLSLLTQPSPATLERSLTSSGLDVEA 588

Query: 606 FQFISPVTAR 615
            Q ++ + AR
Sbjct: 589 TQIVTSIAAR 598

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537980|ref|XP_003537484.1| PREDICTED: Nod factor receptor protein [Glycine max] gi|148362061|gb|ABQ59609.1| NFR5a [Glycine max] gi|299481060|gb|ADJ19105.1| Nod-factor receptor 5A [Glycine max] gi|299481066|gb|ADJ19108.1| Nod-factor receptor 5A [Glycine max]

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/610 (58%), Positives = 447/610 (73%), Gaps = 28/610 (4%)

Query: 8   LQALFLLMTIHITAQSPAANGTDFSCSADSLPSCKTYVAYFAQSPEFLDLSNISDLFGVS 67
           L  + +L + +I AQS   N T+FSC +DS PSC+TYV Y AQSP FL L+NIS++F  S
Sbjct: 15  LCLVIMLFSTNIVAQSQQDNRTNFSCPSDSPPSCETYVTYIAQSPNFLSLTNISNIFDTS 74

Query: 68  RLSIARASNLVSEDTPLVPKQLLLVPIICGCTGNQYFANITYQIKKGDSYYLVSITSFEN 127
            LSIARASNL   D  LV  Q+LLVP+ CGCTGN+ FANI+Y+I +GDS+Y V+ TS+EN
Sbjct: 75  PLSIARASNLEPMDDKLVKDQVLLVPVTCGCTGNRSFANISYEINQGDSFYFVATTSYEN 134

Query: 128 LTNWHAVLEMNPGINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLITYVWQPGDDVSQV 187
           LTNW AV+++NP ++PN L IG++V FPLFCKCPSK  ++  I+ LITYVW+PGD+VS V
Sbjct: 135 LTNWRAVMDLNPVLSPNKLPIGIQVVFPLFCKCPSKNQLDKEIKYLITYVWKPGDNVSLV 194

Query: 188 GAKLNASSAAIETENEY-RNFSEAVSLPVLIPVSQLPSLSQSYPSTKRNGSKHHLTLIIP 246
             K  AS   I +EN Y +NF+ A +LPVLIPV++LP L++S PS  R G    L +II 
Sbjct: 195 SDKFGASPEDIMSENNYGQNFTAANNLPVLIPVTRLPVLARS-PSDGRKGG-IRLPVIIG 252

Query: 247 ISAGGALLILLVAALVIYNHHLQRKRVRILNRNGSSLESADLIPMKENSKSDRFEPKLAQ 306
           IS G  LL+L++A L++Y + L   +++ LNR+ SS E+AD                   
Sbjct: 253 ISLGCTLLVLVLAVLLVYVYCL---KMKTLNRSASSAETAD------------------- 290

Query: 307 NKLLPGVSGYLGKPIVYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTE 366
            KLL GVSGY+ KP +YE + IME+TMNLSE   IG+SVY+A I+GKVLAVK+ KEDVTE
Sbjct: 291 -KLLSGVSGYVSKPTMYETDAIMEATMNLSEQCKIGESVYKANIEGKVLAVKRFKEDVTE 349

Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLT 426
           EL+ILQ++NH NLVKLMGVSSD+ GN F+VYEYAENGSLD+WL  KS  S +S S   LT
Sbjct: 350 ELKILQKVNHGNLVKLMGVSSDNDGNCFVVYEYAENGSLDEWLFSKS-CSDTSNSRASLT 408

Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM 486
           W QR+ +A+DVA GLQYMHEHA P IVHRDI ++NI LDS FKAKIANFS+A   TN +M
Sbjct: 409 WCQRISMAVDVAMGLQYMHEHAYPRIVHRDITSSNILLDSNFKAKIANFSMARTFTNPMM 468

Query: 487 PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE 546
           PK DVFAFGVVL+ELL+G+KA  T ENG+  +LWK+I ++   EE REERL+ WMDP LE
Sbjct: 469 PKIDVFAFGVVLIELLTGRKAMTTKENGEVVMLWKDIWKIFDQEENREERLKKWMDPKLE 528

Query: 547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ-STETLERSWTSGLEAEEA 605
           S+YPID ALSLA+LA  CT DKSLSRP +AE+V +LS+LTQ S  TLERS TS     EA
Sbjct: 529 SYYPIDYALSLASLAVNCTADKSLSRPTIAEIVLSLSLLTQPSPATLERSLTSSGLDVEA 588

Query: 606 FQFISPVTAR 615
            Q ++ + AR
Sbjct: 589 TQIVTSIAAR 598

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|299481064|gb|ADJ19107.1| Nod-factor receptor 5A [Glycine max]

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/610 (58%), Positives = 447/610 (73%), Gaps = 28/610 (4%)

Query: 8   LQALFLLMTIHITAQSPAANGTDFSCSADSLPSCKTYVAYFAQSPEFLDLSNISDLFGVS 67
           L  + +L + +I AQS   N T+FSC +DS PSC+TYV Y AQSP FL L+NIS++F  S
Sbjct: 15  LCLVIMLFSTNIVAQSQQDNRTNFSCPSDSPPSCETYVTYIAQSPNFLSLTNISNIFDTS 74

Query: 68  RLSIARASNLVSEDTPLVPKQLLLVPIICGCTGNQYFANITYQIKKGDSYYLVSITSFEN 127
            LSIARASNL   D  LV  Q+LLVP+ CGCTGN+ FANI+Y+I +GDS+Y V+ TS+EN
Sbjct: 75  PLSIARASNLEPMDDKLVKDQVLLVPVTCGCTGNRSFANISYEINQGDSFYFVATTSYEN 134

Query: 128 LTNWHAVLEMNPGINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLITYVWQPGDDVSQV 187
           LTNW AV+++NP ++PN L IG++V FPLFCKCPSK  ++  I+ LITYVW+PGD+VS V
Sbjct: 135 LTNWRAVMDLNPVLSPNKLPIGIQVVFPLFCKCPSKNQLDKEIKYLITYVWKPGDNVSLV 194

Query: 188 GAKLNASSAAIETENEY-RNFSEAVSLPVLIPVSQLPSLSQSYPSTKRNGSKHHLTLIIP 246
             K  AS   I +EN Y +NF+ A +LPVLIPV++LP L++S PS  R G    L +II 
Sbjct: 195 SDKFGASPEDIMSENNYGQNFTAANNLPVLIPVTRLPVLARS-PSDGRKGG-IRLPVIIG 252

Query: 247 ISAGGALLILLVAALVIYNHHLQRKRVRILNRNGSSLESADLIPMKENSKSDRFEPKLAQ 306
           IS G  LL+L++A L++Y + L   +++ LNR+ SS E+AD                   
Sbjct: 253 ISLGCTLLVLVLAVLLVYVYCL---KMKTLNRSASSAETAD------------------- 290

Query: 307 NKLLPGVSGYLGKPIVYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTE 366
            KLL GVSGY+ KP +YE + IME+TMNLSE   IG+SVY+A I+GKVLAVK+ K+DVTE
Sbjct: 291 -KLLSGVSGYVSKPTMYETDAIMEATMNLSEQCKIGESVYKANIEGKVLAVKRFKKDVTE 349

Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLT 426
           EL+ILQ++NH NLVKLMGVSSD+ GN F+VYEYAENGSLD+WL  KS  S +S S   LT
Sbjct: 350 ELKILQKVNHGNLVKLMGVSSDNDGNCFVVYEYAENGSLDEWLFSKS-CSDTSNSRASLT 408

Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM 486
           W QR+ +A+DVA GLQYMHEHA P IVHRDI ++NI LDS FKAKIANFS+A   TN +M
Sbjct: 409 WCQRISMAVDVAMGLQYMHEHAYPRIVHRDITSSNILLDSNFKAKIANFSMARTFTNPMM 468

Query: 487 PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE 546
           PK DVFAFGVVL+ELL+G+KA  T ENG+  +LWK+I ++   EE REERL+ WMDP LE
Sbjct: 469 PKIDVFAFGVVLIELLTGRKAVTTKENGEVVMLWKDIWKIFDQEENREERLKKWMDPKLE 528

Query: 547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ-STETLERSWTSGLEAEEA 605
           S+YPID ALSLA+LA  CT DKSLSRP +AE+V +LS+LTQ S  TLERS TS     EA
Sbjct: 529 SYYPIDYALSLASLAVNCTADKSLSRPTIAEIVLSLSLLTQPSPATLERSLTSSGLDVEA 588

Query: 606 FQFISPVTAR 615
            Q ++ + AR
Sbjct: 589 TQIVTSIAAR 598

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37651066|emb|CAE02593.1| SYM10 protein [Pisum sativum] gi|37651068|emb|CAE02594.1| SYM10 protein [Pisum sativum]

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/622 (55%), Positives = 443/622 (71%), Gaps = 35/622 (5%)

Query: 1   MAISSL--SLQALFLLMTIHIT---AQSPAANGTDFSCSADSLPSCKTYVAYFAQSPEFL 55
           MAI  L  S  ALFL +   +T   AQ    +GT+FSC  DS PSC+TYV YFA+SP FL
Sbjct: 1   MAIFFLPSSSHALFLALMFFVTNISAQPLQLSGTNFSCPVDSPPSCETYVTYFARSPNFL 60

Query: 56  DLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPIICGCTGNQYFANITYQIKKGD 115
            L+NISD+F +S LSIA+ASN+  ED  LV  Q+LL+P+ CGCT N+YFAN TY IK GD
Sbjct: 61  SLTNISDIFDMSPLSIAKASNIEDEDKKLVEGQVLLIPVTCGCTRNRYFANFTYTIKLGD 120

Query: 116 SYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLIT 175
           +Y++VS TS++NLTN+  +   NP ++PNLL   +KV  PLFCKCPSK  +  GI++LIT
Sbjct: 121 NYFIVSTTSYQNLTNYVEMENFNPNLSPNLLPPEIKVVVPLFCKCPSKNQLSKGIKHLIT 180

Query: 176 YVWQPGDDVSQVGAKLNASSAAIETENEYRNFSEAVSLPVLIPVSQLPSLSQSYPSTKRN 235
           YVWQ  D+V++V +K  AS   + TEN  +NF+ + ++P+LIPV++LP + Q   S  R 
Sbjct: 181 YVWQANDNVTRVSSKFGASQVDMFTENN-QNFTASTNVPILIPVTKLPVIDQP-SSNGRK 238

Query: 236 GSKHHLTLIIPISAGGALLILLVAALVIYNHHLQRKRVRILNRNGSSLESADLIPMKENS 295
            S      II IS G A  ++++   ++Y + L+ KR   LNR+ S  E+AD        
Sbjct: 239 NSTQKPAFIIGISLGCAFFVVVLTLSLVYVYCLKMKR---LNRSTSLAETAD-------- 287

Query: 296 KSDRFEPKLAQNKLLPGVSGYLGKPIVYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVL 355
                       KLL GVSGY+ KP +YE++ IME+TMNLSE+  IG+SVY+A IDG+VL
Sbjct: 288 ------------KLLSGVSGYVSKPTMYEMDAIMEATMNLSENCKIGESVYKANIDGRVL 335

Query: 356 AVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS 415
           AVKKIK+D +EEL+ILQ++NH NLVKLMGVSSD+ GN FLVYEYAENGSLD+WL   S+S
Sbjct: 336 AVKKIKKDASEELKILQKVNHGNLVKLMGVSSDNDGNCFLVYEYAENGSLDEWLF--SES 393

Query: 416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF 475
           S +S SV+ LTWSQR+ VA+DVA GLQYMHEH  P I+HRDI T+NI LDS FKAKIANF
Sbjct: 394 SKTSNSVVSLTWSQRITVAVDVAVGLQYMHEHTYPRIIHRDITTSNILLDSNFKAKIANF 453

Query: 476 SLAAPATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREE 535
           S+A  +TN +MPK DVFAFGVVL+ELL+GKKA  T ENG+  +LWK+  ++  +E  REE
Sbjct: 454 SMARTSTNSMMPKIDVFAFGVVLIELLTGKKAITTMENGEVVILWKDFWKIFDLEGNREE 513

Query: 536 RLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE--TLE 593
            LR WMDP LE+FYPID ALSLA+LA  CT DKSLSRP++AE+V  LS+L QS+    LE
Sbjct: 514 SLRKWMDPKLENFYPIDNALSLASLAVNCTADKSLSRPSIAEIVLCLSLLNQSSSEPMLE 573

Query: 594 RSWTSGLEAEEAFQFISPVTAR 615
           RS TSGL+  EA   ++ + AR
Sbjct: 574 RSLTSGLDV-EATHVVTSIVAR 594

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37651070|emb|CAE02595.1| SYM10 protein [Pisum sativum] gi|37651072|emb|CAE02596.1| SYM10 protein [Pisum sativum] gi|283855903|gb|ADB45277.1| Nod factor recognition protein [Pisum sativum]

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/622 (55%), Positives = 443/622 (71%), Gaps = 35/622 (5%)

Query: 1   MAISSL--SLQALFLLMTIHIT---AQSPAANGTDFSCSADSLPSCKTYVAYFAQSPEFL 55
           MAI  L  S  ALFL +   +T   AQ    +GT+FSC  DS PSC+TYV YFA+SP FL
Sbjct: 1   MAIFFLPSSSHALFLALMFFVTNISAQPLQLSGTNFSCPVDSPPSCETYVTYFARSPNFL 60

Query: 56  DLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPIICGCTGNQYFANITYQIKKGD 115
            L+NISD+F +S LSIA+ASN+  ED  LV  Q+LL+P+ CGCT N+YFAN TY IK GD
Sbjct: 61  SLTNISDIFDMSPLSIAKASNIEDEDKKLVEGQVLLIPVTCGCTRNRYFANFTYTIKLGD 120

Query: 116 SYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLIT 175
           +Y++VS TS++NLTN+  +   NP ++PNLL   +KV  PLFCKCPSK  +  GI++LIT
Sbjct: 121 NYFIVSTTSYQNLTNYVEMENFNPNLSPNLLPPEIKVVVPLFCKCPSKNQLSKGIKHLIT 180

Query: 176 YVWQPGDDVSQVGAKLNASSAAIETENEYRNFSEAVSLPVLIPVSQLPSLSQSYPSTKRN 235
           YVWQ  D+V++V +K  AS   + TEN  +NF+ + ++P+LIPV++LP + Q   S  R 
Sbjct: 181 YVWQANDNVTRVSSKFGASQVDMFTENN-QNFTASTNVPILIPVTKLPVIDQP-SSNGRK 238

Query: 236 GSKHHLTLIIPISAGGALLILLVAALVIYNHHLQRKRVRILNRNGSSLESADLIPMKENS 295
            S      II IS G A  ++++   ++Y + L+ KR   LNR+ S  E+AD        
Sbjct: 239 NSTQKPAFIIGISLGCAFFVVVLTLSLVYVYCLKMKR---LNRSTSLAETAD-------- 287

Query: 296 KSDRFEPKLAQNKLLPGVSGYLGKPIVYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVL 355
                       KLL GVSGY+ KP +YE++ IME+TMNLSE+  IG+SVY+A IDG+VL
Sbjct: 288 ------------KLLSGVSGYVSKPTMYEMDAIMEATMNLSENCKIGESVYKANIDGRVL 335

Query: 356 AVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS 415
           AVKKIK+D +EEL+ILQ++NH NLVKLMGVSSD++GN FLVYEYAENGSLD+WL   S+ 
Sbjct: 336 AVKKIKKDASEELKILQKVNHGNLVKLMGVSSDNEGNCFLVYEYAENGSLDEWLF--SEL 393

Query: 416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF 475
           S +S SV+ LTWSQR+ VA+DVA GLQYMHEH  P I+HRDI T+NI LDS FKAKIANF
Sbjct: 394 SKTSNSVVSLTWSQRITVAVDVAVGLQYMHEHTYPRIIHRDITTSNILLDSNFKAKIANF 453

Query: 476 SLAAPATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREE 535
           S+A  +TN +MPK DVFAFGVVL+ELL+GKKA  T ENG+  +LWK+  ++  +E  REE
Sbjct: 454 SMARTSTNSMMPKIDVFAFGVVLIELLTGKKAITTMENGEVVILWKDFWKIFDLEGNREE 513

Query: 536 RLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE--TLE 593
            LR WMDP LE+FYPID ALSLA+LA  CT DKSLSRP++AE+V  LS+L QS+    LE
Sbjct: 514 SLRKWMDPKLENFYPIDNALSLASLAVNCTADKSLSRPSIAEIVLCLSLLNQSSSEPMLE 573

Query: 594 RSWTSGLEAEEAFQFISPVTAR 615
           RS TSGL+  EA   ++ + AR
Sbjct: 574 RSLTSGLDV-EATHVVTSIVAR 594

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	615
TAIR|locus:2050987	664	LYK5 "LysM-containing receptor	0.256	0.237	0.398	7.8e-57
TAIR|locus:2049029	612	LYK4 "LysM-containing receptor	0.476	0.478	0.304	1.7e-46
TAIR|locus:2089860	617	CERK1 "chitin elicitor recepto	0.255	0.254	0.375	2.2e-44
UNIPROTKB|D7UPN3	605	CERK1 "Chitin elicitor recepto	0.243	0.247	0.386	1.3e-38
TAIR|locus:2195814	651	LYK3 "LysM-containing receptor	0.250	0.236	0.369	3.7e-35
TAIR|locus:2082359	654	LYK2 "LysM-containing receptor	0.299	0.281	0.302	2.2e-32
TAIR|locus:2054492	338	AT2G30730 [Arabidopsis thalian	0.247	0.449	0.365	2.6e-30
TAIR|locus:2132168	725	AT4G02010 [Arabidopsis thalian	0.243	0.206	0.378	3.5e-29
TAIR|locus:2183835	433	AT5G11020 [Arabidopsis thalian	0.278	0.394	0.345	4.4e-28
TAIR|locus:2081277	408	AT3G59350 [Arabidopsis thalian	0.245	0.370	0.375	6.5e-28

TAIR|locus:2050987 LYK5 "LysM-containing receptor-like kinase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 7.8e-57, Sum P(3) = 7.8e-57
 Identities = 67/168 (39%), Positives = 100/168 (59%)

Query:   312 GVSGYLGKPIVYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTE-ELRI 370
             G+   +    +Y    +  +T N S+   I  SVYRATI+G   AVK IK DV+  E+ +
Sbjct:   349 GLKSAIESLTLYRFNDLQSATSNFSDENRIKGSVYRATINGDDAAVKVIKGDVSSSEINL 408

Query:   371 LQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQR 430
             L+++NH+N+++L G     +G  +LV+EY+ENGS+  WLH              LTW QR
Sbjct:   409 LKKLNHSNIIRLSGFCI-REGTSYLVFEYSENGSISDWLHSSGKKS--------LTWKQR 459

Query:   431 LRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             + +A DVA  L Y+H +  P  +H+++ + NI LDS F+AKIANF +A
Sbjct:   460 VEIARDVAEALDYLHNYITPPHIHKNLESTNILLDSNFRAKIANFGVA 507

GO:0005576 "extracellular region" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0010200 "response to chitin" evidence=RCA

GO:0008061 "chitin binding" evidence=IDA

GO:0071323 "cellular response to chitin" evidence=IEP

TAIR|locus:2049029 LYK4 "LysM-containing receptor-like kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.7e-46, Sum P(2) = 1.7e-46
 Identities = 96/315 (30%), Positives = 154/315 (48%)

Query:   292 KENSKSDRF---EPKLAQNKLLP--GVSGYLGKPI-VYEIEVIMESTMNLSEHYSIGKSV 345
             +E    D F   +P ++  +  P  G+SG + + + VY+   +  +T + +   SIG S 
Sbjct:   307 EETGNLDSFMGKKPPMSDQEFDPLDGLSGMVVESLKVYKFHELQSATSDFTSSSSIGGSG 366

Query:   346 YRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
             Y   I+G    +KKI+ + +EE+ +L ++NH N+++L G     +G+ +LVYE+A NGSL
Sbjct:   367 YIGKINGDGAMIKKIEGNASEEVNLLSKLNHLNIIRLSGFCFH-EGDWYLVYEHASNGSL 425

Query:   406 DKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD 465
              +W+H              L+ +Q+L++ALD+A GL Y+H  A P  VHRD+ +NN+ LD
Sbjct:   426 SEWIHTTKS---------LLSLTQKLQIALDIATGLNYLHNFADPPYVHRDLNSNNVFLD 476

Query:   466 SRFKAKIANFSLAAPATND-VMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEI 523
               F+AKI +   A   T D V+ K      G +  E L  G  +T+        VL + +
Sbjct:   477 LEFRAKIGSLGSARSTTEDFVLTKHVEGTRGYLAPEYLEHGLVSTKLDVYAFGVVLLEIV 536

Query:   524 XXXXXXXXXXXXXXXNWMDPNL--ESFYPIDGALSLAT-LARACTMDKSLSRPNMAEVVF 580
                              +D  L      P +G  S    L   C     L+RP+M E V 
Sbjct:   537 TGKEASELKKEIDEGKAIDEILIHGRLLP-EGLTSFVERLVVDCLKKDHLNRPSMDENVM 595

Query:   581 NLSVLTQSTETLERS 595
             +LS +  +T+  E S
Sbjct:   596 SLSKILAATQNWEES 610

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0008061 "chitin binding" evidence=IDA

GO:0045087 "innate immune response" evidence=IMP

GO:0071219 "cellular response to molecule of bacterial origin" evidence=IEP

GO:0071323 "cellular response to chitin" evidence=IEP

TAIR|locus:2089860 CERK1 "chitin elicitor receptor kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 2.2e-44, Sum P(3) = 2.2e-44
 Identities = 66/176 (37%), Positives = 110/176 (62%)

Query:   311 PGVSGY-LGKPIVYEIEVIMESTMNLSEHYSIGK----SVYRATIDGKVLAVKKIKEDVT 365
             PG++   + K + + +E + ++T N +  + IG+    +VY A + G+  A+KK+  + +
Sbjct:   297 PGIAAISVDKSVEFSLEELAKATDNFNLSFKIGQGGFGAVYYAELRGEKAAIKKMDMEAS 356

Query:   366 E----ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXX 421
             +    EL++L R++H NLV+L+G   +  G+ FLVYEY ENG+L + LH           
Sbjct:   357 KQFLAELKVLTRVHHVNLVRLIGYCVE--GSLFLVYEYVENGNLGQHLHGSGREP----- 409

Query:   422 VIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSL 477
                L W++R+++ALD A GL+Y+HEH  P  VHRDI++ NI +D +F+AK+A+F L
Sbjct:   410 ---LPWTKRVQIALDSARGLEYIHEHTVPVYVHRDIKSANILIDQKFRAKVADFGL 462

GO:0005576 "extracellular region" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=IMP;IDA

GO:0032491 "detection of molecule of fungal origin" evidence=IEP;IMP

GO:0035556 "intracellular signal transduction" evidence=RCA;IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0010200 "response to chitin" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0002752 "cell surface pattern recognition receptor signaling pathway" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IDA

GO:0008061 "chitin binding" evidence=IDA

GO:2001080 "chitosan binding" evidence=IDA

GO:0032499 "detection of peptidoglycan" evidence=IMP

GO:0045087 "innate immune response" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0071219 "cellular response to molecule of bacterial origin" evidence=IEP

GO:0071323 "cellular response to chitin" evidence=IEP

UNIPROTKB|D7UPN3 CERK1 "Chitin elicitor receptor kinase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 273 (101.2 bits), Expect = 1.3e-38, Sum P(3) = 1.3e-38
 Identities = 65/168 (38%), Positives = 98/168 (58%)

Query:   319 KPIVYEIEVIMESTMNLSEHYSIGK----SVYRATIDGKVLAVKKIKEDVTEE----LRI 370
             + I +  E I  +T   S  + IG+    SVY A + G+  A+KK+    T+E    L++
Sbjct:   301 RSIEFSYEEIFNATQGFSMEHKIGQGGFGSVYYAELRGEKTAIKKMGMQATQEFLAELKV 360

Query:   371 LQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQR 430
             L  ++H NLV+L+G   ++    FLVYE+ +NG+L + L               L+W+ R
Sbjct:   361 LTHVHHLNLVRLIGYCVENC--LFLVYEFIDNGNLSQHLQRTGYAP--------LSWATR 410

Query:   431 LRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             +++ALD A GL+Y+HEH  P  VHRDI++ NI LD  F+AKIA+F LA
Sbjct:   411 VQIALDSARGLEYLHEHVVPVYVHRDIKSANILLDKDFRAKIADFGLA 458

GO:0005515 "protein binding" evidence=IPI

GO:0008061 "chitin binding" evidence=IDA

GO:0010200 "response to chitin" evidence=IDA

GO:0043621 "protein self-association" evidence=IDA

TAIR|locus:2195814 LYK3 "LysM-containing receptor-like kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 3.7e-35, Sum P(3) = 3.7e-35
 Identities = 62/168 (36%), Positives = 97/168 (57%)

Query:   319 KPIVYEIEVIMESTMNLSEHYSIGK----SVYRATIDGKVLAVKKIKEDVTEE----LRI 370
             KP+V+  E I  +T   S+   +G     SVY   +  + +AVK++    T+E    +++
Sbjct:   325 KPMVFTYEEIRAATDEFSDSNLLGHGNYGSVYFGLLREQEVAVKRMTATKTKEFAAEMKV 384

Query:   371 LQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQR 430
             L +++H+NLV+L+G ++ +    F+VYEY   G L   LH              L+W  R
Sbjct:   385 LCKVHHSNLVELIGYAA-TVDELFVVYEYVRKGMLKSHLHDPQSKGNTP-----LSWIMR 438

Query:   431 LRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
              ++ALD A GL+Y+HEH +   VHRDI+T+NI LD  F+AKI++F LA
Sbjct:   439 NQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDEAFRAKISDFGLA 486

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016998 "cell wall macromolecule catabolic process" evidence=IEA

GO:0007020 "microtubule nucleation" evidence=RCA

TAIR|locus:2082359 LYK2 "LysM-containing receptor-like kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 2.2e-32, Sum P(2) = 2.2e-32
 Identities = 63/208 (30%), Positives = 111/208 (53%)

Query:   319 KPI--VYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTE--ELRILQRI 374
             KP+  +Y  E + ++T N S    I  SVY  ++ GK LA+K++  D  +  +  +L   
Sbjct:   327 KPVLEIYAFEELEKATENFSSSNHIKGSVYFGSLKGKDLAIKQVNADEMKRFDFGLLNDQ 386

Query:   375 NHA---NLVKLMGVS-SDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXX--VIFLTWS 428
             +H    N+++++G    +   + +LV+EYA NGSL  W+                FL W 
Sbjct:   387 SHYYNHNVIRVLGTCFREIDQDSYLVFEYARNGSLWDWIQNKLAIKNQFIESCYCFLAWK 446

Query:   429 QRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM-- 486
             QR+++  DVA  L+YMH   + + VH +I++ NI L+   + K+ NF ++   TN++   
Sbjct:   447 QRIKICHDVAIALKYMH---RINYVHGNIKSRNIFLNEDLRGKVGNFGMSKCVTNELATE 503

Query:   487 ---------PKFDVFAFGVVLLELLSGK 505
                      P  D+FA+G++++E+LSG+
Sbjct:   504 ENLIESSLSPASDIFAYGIIVMEVLSGQ 531

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2054492 AT2G30730 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
 Identities = 61/167 (36%), Positives = 96/167 (57%)

Query:   325 IEVIMESTMNLSEHYSIGKS----VYRATI-DGKVLAVKKIK---EDVTE-----ELRIL 371
             ++ + E T N   +  IG+     VY AT+ DGK +A+KK+    ED T      ++ ++
Sbjct:    37 VDEVNEQTDNFGPNSLIGEGSYGRVYYATLNDGKAVALKKLDLAPEDETNTEFLSQVSMV 96

Query:   372 QRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRL 431
              R+ H NL++L+G   D +  R L YE+A  GSL   LH              L W  R+
Sbjct:    97 SRLKHENLIQLVGYCVD-ENLRVLAYEFATMGSLHDILHGRKGVQDALPGPT-LDWITRV 154

Query:   432 RVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             ++A++ A GL+Y+HE  QP ++HRDIR++NI L   ++AKIA+F+L+
Sbjct:   155 KIAVEAARGLEYLHEKVQPQVIHRDIRSSNILLFDDYQAKIADFNLS 201

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2132168 AT4G02010 [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 3.5e-29, Sum P(2) = 3.5e-29
 Identities = 64/169 (37%), Positives = 93/169 (55%)

Query:   326 EVIMESTMNLSEHYSIGKS----VYRATI-DGKVLAVKKIK-------EDVTEELRILQR 373
             E + E+T N      +G+     VYR  + DG  +A+KK+        ++   E+ +L R
Sbjct:   371 EELKEATSNFESASILGEGGFGKVYRGILADGTAVAIKKLTSGGPQGDKEFQVEIDMLSR 430

Query:   374 INHANLVKLMGV-SSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLR 432
             ++H NLVKL+G  SS       L YE   NGSL+ WLH              L W  R++
Sbjct:   431 LHHRNLVKLVGYYSSRDSSQHLLCYELVPNGSLEAWLHGPLGLNCP------LDWDTRMK 484

Query:   433 VALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA 481
             +ALD A GL Y+HE +QPS++HRD + +NI L++ F AK+A+F LA  A
Sbjct:   485 IALDAARGLAYLHEDSQPSVIHRDFKASNILLENNFNAKVADFGLAKQA 533

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2183835 AT5G11020 [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.4e-28, Sum P(2) = 4.4e-28
 Identities = 66/191 (34%), Positives = 106/191 (55%)

Query:   300 FEPKLAQNKLLPGVSGYLGKPIVYEIEVIMESTMNLSEHYSIGKS----VYRATIDGKV- 354
             F  + +++K L   +   G   + +  ++ E T    E   +G+     VY AT++  + 
Sbjct:   106 FLNRFSRSKTLDKRTTKQGTVSLIDYNILEEGTSGFKESNILGQGGFGCVYSATLENNIS 165

Query:   355 LAVKKI---KEDVTEELR----ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK 407
              AVKK+    ED  +E +    IL ++ H N++ L+G S++    RF+VYE   N SL+ 
Sbjct:   166 AAVKKLDCANEDAAKEFKSEVEILSKLQHPNIISLLGYSTNDTA-RFIVYELMPNVSLES 224

Query:   408 WLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR 467
              LH              +TW  R+++ALDV  GL+Y+HEH  P+I+HRD++++NI LDS 
Sbjct:   225 HLHGSSQGSA-------ITWPMRMKIALDVTRGLEYLHEHCHPAIIHRDLKSSNILLDSN 277

Query:   468 FKAKIANFSLA 478
             F AKI++F LA
Sbjct:   278 FNAKISDFGLA 288

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2081277 AT3G59350 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 6.5e-28, Sum P(2) = 6.5e-28
 Identities = 63/168 (37%), Positives = 91/168 (54%)

Query:   325 IEVIMESTMNLSEHYSIGKS----VYRATI-DGKVLAVKKIKEDVTEELRI--------L 371
             ++ + E T N      IG+      Y AT+ DGK +AVKK+      E  +        +
Sbjct:   103 LDELKEKTDNFGSKSLIGEGSYGRAYYATLKDGKAVAVKKLDNAAEPESNVEFLTQVSRV 162

Query:   372 QRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQR 430
              ++ H N V+L G   +  GN R L YE+A  GSL   LH              L W QR
Sbjct:   163 SKLKHDNFVELFGYCVE--GNFRILAYEFATMGSLHDILHGRKGVQGAQPGPT-LDWIQR 219

Query:   431 LRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             +R+A+D A GL+Y+HE  QP+++HRDIR++N+ L   FKAKIA+F+L+
Sbjct:   220 VRIAVDAARGLEYLHEKVQPAVIHRDIRSSNVLLFEDFKAKIADFNLS 267

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0010200 "response to chitin" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	615
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	3e-31
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	4e-31
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	6e-31
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	1e-30
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	6e-29
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	4e-27
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	3e-26
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	6e-22
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	3e-20
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	1e-19
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	6e-19
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	4e-18
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	6e-17
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	3e-16
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	5e-16
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	7e-16
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	8e-15
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	1e-14
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	2e-14
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	3e-14
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	3e-14
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	4e-14
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	5e-14
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	7e-14
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	1e-13
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	5e-13
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	6e-13
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	6e-13
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	6e-13
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	7e-13
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	9e-13
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	1e-12
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	1e-12
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	2e-12
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	2e-12
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	2e-12
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	4e-12
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	4e-12
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	5e-12
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	5e-12
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	6e-12
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	6e-12
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	7e-12
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	1e-11
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	1e-11
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	1e-11
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	1e-11
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	2e-11
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	3e-11
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	3e-11
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	3e-11
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	4e-11
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	4e-11
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	5e-11
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	6e-11
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	8e-11
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	1e-10
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	2e-10
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	2e-10
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	2e-10
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	2e-10
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	2e-10
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	2e-10
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	2e-10
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	4e-10
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	5e-10
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	6e-10
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	6e-10
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	6e-10
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	7e-10
PHA02988	283	PHA02988, PHA02988, hypothetical protein; Provisio	8e-10
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	8e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-10
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	1e-09
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	1e-09
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	2e-09
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	3e-09
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	3e-09
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	3e-09
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	3e-09
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	3e-09
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	5e-09
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	5e-09
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	6e-09
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	7e-09
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	8e-09
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	9e-09
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	1e-08
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	1e-08
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	1e-08
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	1e-08
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	2e-08
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	2e-08
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	2e-08
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	2e-08
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	3e-08
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	3e-08
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	3e-08
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	4e-08
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	6e-08
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	7e-08
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	7e-08
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	1e-07
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	1e-07
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	2e-07
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	2e-07
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	3e-07
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	3e-07
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	3e-07
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	3e-07
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	3e-07
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	4e-07
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	4e-07
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	5e-07
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	5e-07
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	7e-07
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	9e-07
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	9e-07
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	2e-06
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	2e-06
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	3e-06
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	3e-06
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	3e-06
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	4e-06
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	7e-06
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	7e-06
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	7e-06
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	7e-06
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	8e-06
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	9e-06
cd05037	259	cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) dom	1e-05
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	1e-05
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	1e-05
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	1e-05
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	1e-05
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	1e-05
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	2e-05
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	2e-05
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	2e-05
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	2e-05
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	2e-05
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	2e-05
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	2e-05
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	3e-05
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	3e-05
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	3e-05
cd05064	266	cd05064, PTKc_EphR_A10, Catalytic domain of the Pr	3e-05
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	3e-05
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	3e-05
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	3e-05
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	4e-05
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	4e-05
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	5e-05
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	5e-05
cd05103	343	cd05103, PTKc_VEGFR2, Catalytic domain of the Prot	5e-05
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	5e-05
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	6e-05
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	6e-05
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	6e-05
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	6e-05
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	6e-05
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	8e-05
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	9e-05
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	1e-04
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	1e-04
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	1e-04
cd06638	286	cd06638, STKc_myosinIIIA, Catalytic domain of the	1e-04
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	1e-04
cd08216	314	cd08216, PK_STRAD, Pseudokinase domain of STE20-re	1e-04
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	1e-04
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	2e-04
cd05576	237	cd05576, STKc_RPK118_like, Catalytic domain of the	2e-04
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	2e-04
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	2e-04
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	2e-04
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	2e-04
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	3e-04
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	3e-04
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	4e-04
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	4e-04
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	4e-04
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	5e-04
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	5e-04
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	5e-04
cd05120	155	cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphot	5e-04
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	6e-04
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	6e-04
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	7e-04
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	7e-04
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	8e-04
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	8e-04
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	8e-04
PHA03210	501	PHA03210, PHA03210, serine/threonine kinase US3; P	0.001
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	0.001
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	0.001
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	0.001
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	0.001
COG3858	423	COG3858, COG3858, Predicted glycosyl hydrolase [Ge	0.001
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	0.001
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	0.001
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	0.002
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	0.002
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	0.002
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	0.002
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	0.002
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	0.002
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	0.003
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	0.003
cd00118	45	cd00118, LysM, Lysine Motif is a small domain invo	0.003
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	0.003
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	0.003
cd05077	262	cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) do	0.003
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	0.003
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	0.004
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	0.004
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	0.004
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	0.004
cd05086	268	cd05086, PTKc_Aatyk2, Catalytic domain of the Prot	0.004

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score =  121 bits (307), Expect = 3e-31
 Identities = 67/276 (24%), Positives = 110/276 (39%), Gaps = 76/276 (27%)

Query: 345 VYRATIDGKVL------AVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQ 390
           VY+ T+ GK        AVK +KED +E        E RI+++++H N+VKL+GV ++ +
Sbjct: 15  VYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNIVKLLGVCTE-E 73

Query: 391 GNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
               +V EY   G L  +L               L+ S  L  AL +A G++Y+      
Sbjct: 74  EPLMIVMEYMPGGDLLDYLRKNRPK--------ELSLSDLLSFALQIARGMEYLESK--- 122

Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM------------------------ 486
           + +HRD+   N  +      KI++F L+    +D                          
Sbjct: 123 NFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKVKGGKLPIRWMAPESLKEGKFT 182

Query: 487 PKFDVFAFGVVLLELLSGKKATRTTENGKT---AVLWKEIREVLKVEEKREERLRNWMDP 543
            K DV++FGV+L E+ +          G+     +   E+ E LK +  R  +       
Sbjct: 183 SKSDVWSFGVLLWEIFT---------LGEEPYPGMSNAEVLEYLK-KGYRLPK------- 225

Query: 544 NLESFYPIDGALSLATLARACTMDKSLSRPNMAEVV 579
                 P +    L  L   C  +    RP  +E+V
Sbjct: 226 ------PPNCPPELYKLMLQCWAEDPEDRPTFSELV 255

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score =  121 bits (307), Expect = 4e-31
 Identities = 68/276 (24%), Positives = 111/276 (40%), Gaps = 77/276 (27%)

Query: 345 VYRATIDGKVL------AVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQ 390
           VY+  + GK        AVK +KED +E        E RI+++++H N+VKL+GV ++ +
Sbjct: 15  VYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVVKLLGVCTE-E 73

Query: 391 GNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
              ++V EY E G L  +L               L+ S  L  AL +A G++Y+      
Sbjct: 74  EPLYIVMEYMEGGDLLSYLRKNRPK---------LSLSDLLSFALQIARGMEYLESK--- 121

Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM------------------------ 486
           + +HRD+   N  +      KI++F L+    +D                          
Sbjct: 122 NFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYRKRGGKLPIRWMAPESLKEGKFT 181

Query: 487 PKFDVFAFGVVLLELLSGKKATRTTENGKT---AVLWKEIREVLKVEEKREERLRNWMDP 543
            K DV++FGV+L E+ +          G+     +  +E+ E L    K   RL      
Sbjct: 182 SKSDVWSFGVLLWEIFT---------LGEQPYPGMSNEEVLEYL----KNGYRLPQ---- 224

Query: 544 NLESFYPIDGALSLATLARACTMDKSLSRPNMAEVV 579
                 P +    L  L   C  +    RP  +E+V
Sbjct: 225 ------PPNCPPELYDLMLQCWAEDPEDRPTFSELV 254

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score =  121 bits (306), Expect = 6e-31
 Identities = 70/276 (25%), Positives = 113/276 (40%), Gaps = 69/276 (25%)

Query: 345 VYRATIDGKVL-----AVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQG 391
           VY+  + GK       AVK +KED +E        E R+++++ H N+V+L+GV ++ + 
Sbjct: 11  VYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTE-EE 69

Query: 392 NRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPS 451
             +LV EY E G L  +L  KS+    S     L+    L  A+ +A G++Y+       
Sbjct: 70  PLYLVLEYMEGGDLLDYLR-KSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASK---K 125

Query: 452 IVHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP------------KF- 489
            VHRD+   N  +      KI++F L+            T   +P             F 
Sbjct: 126 FVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFT 185

Query: 490 ---DVFAFGVVLLELLSGKKATRTTENGKT---AVLWKEIREVLKVEEKREERLRNWMDP 543
              DV++FGV+L E+ +          G T    +  +E+ E L+      +  R    P
Sbjct: 186 SKSDVWSFGVLLWEIFT---------LGATPYPGLSNEEVLEYLR------KGYRL---P 227

Query: 544 NLESFYPIDGALSLATLARACTMDKSLSRPNMAEVV 579
             E          L  L  +C       RP  +E+V
Sbjct: 228 KPEYCPD-----ELYELMLSCWQLDPEDRPTFSELV 258

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  118 bits (299), Expect = 1e-30
 Identities = 63/200 (31%), Positives = 96/200 (48%), Gaps = 52/200 (26%)

Query: 341 IGK----SVYRAT--IDGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVS 386
           +G+    +VY A     GK +A+K IK        E++  E+ IL+++NH N+VKL GV 
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60

Query: 387 SDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE 446
            D + + +LV EY E GSL   L               L+  + LR+ L +  GL+Y+H 
Sbjct: 61  ED-ENHLYLVMEYCEGGSLKDLLKENEG---------KLSEDEILRILLQILEGLEYLHS 110

Query: 447 HAQPSIVHRDIRTNNIQLDSR-FKAKIANFSLAAPATNDVM------------------- 486
           +    I+HRD++  NI LDS   K K+A+F L+   T+D                     
Sbjct: 111 N---GIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLG 167

Query: 487 -----PKFDVFAFGVVLLEL 501
                 K D+++ GV+L EL
Sbjct: 168 KGYYSEKSDIWSLGVILYEL 187

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score =  115 bits (290), Expect = 6e-29
 Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 54/200 (27%)

Query: 345 VYRATIDG-------KVLAVKKIKEDVT--------EELRILQRINHANLVKLMGVSSDS 389
           VY+ T+ G       KV AVK +KE  +        EE  I+++++H N+V+L+GV +  
Sbjct: 15  VYKGTLKGDGEGTETKV-AVKTLKEGASEEEREEFLEEASIMKKLSHPNIVRLLGVCTQG 73

Query: 390 QGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQ 449
           +   ++V EY   G L  +L    +          LT    L++AL +A G++Y+     
Sbjct: 74  EPL-YIVTEYMPGGDLLDFLRKHGEK---------LTLKDLLQMALQIAKGMEYLESK-- 121

Query: 450 PSIVHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP------------K 488
            + VHRD+   N  +      KI++F L+                +P            K
Sbjct: 122 -NFVHRDLAARNCLVTENLVVKISDFGLSRDIYEDDYYRKRGGGKLPIKWMAPESLKDGK 180

Query: 489 F----DVFAFGVVLLELLSG 504
           F    DV++FGV+L E+ + 
Sbjct: 181 FTSKSDVWSFGVLLWEIFTL 200

Length = 258

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score =  110 bits (277), Expect = 4e-27
 Identities = 63/197 (31%), Positives = 96/197 (48%), Gaps = 49/197 (24%)

Query: 344 SVYRAT--IDGKVLAVKKIKEDVTE---------ELRILQRINHANLVKLMGVSSDSQGN 392
           +VY+A     GK++AVK +K+   +         E+RIL+R++H N+V+L+    D   +
Sbjct: 14  TVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVRLIDAFEDK-DH 72

Query: 393 RFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSI 452
            +LV EY E G L  +L               L+  +  ++AL +  GL+Y+H +    I
Sbjct: 73  LYLVMEYCEGGDLFDYLSRGGP----------LSEDEAKKIALQILRGLEYLHSN---GI 119

Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA--------------------AP----ATNDVMPK 488
           +HRD++  NI LD     KIA+F LA                    AP      N   PK
Sbjct: 120 IHRDLKPENILLDENGVVKIADFGLAKKLLKSSSSLTTFVGTPWYMAPEVLLGGNGYGPK 179

Query: 489 FDVFAFGVVLLELLSGK 505
            DV++ GV+L ELL+GK
Sbjct: 180 VDVWSLGVILYELLTGK 196

Length = 260

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  107 bits (270), Expect = 3e-26
 Identities = 55/201 (27%), Positives = 87/201 (43%), Gaps = 50/201 (24%)

Query: 341 IGK----SVYRAT--IDGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVS 386
           +G+     VY A     GK++A+K IK        E +  E++IL+++ H N+V+L  V 
Sbjct: 7   LGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIVRLYDVF 66

Query: 387 SDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE 446
            D +   +LV EY E G L   L  + +          L+  +       + + L+Y+H 
Sbjct: 67  ED-EDKLYLVMEYCEGGDLFDLLKKRGR----------LSEDEARFYLRQILSALEYLHS 115

Query: 447 HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM-------------------- 486
                IVHRD++  NI LD     K+A+F LA                            
Sbjct: 116 K---GIVHRDLKPENILLDEDGHVKLADFGLARQLDPGEKLTTFVGTPEYMAPEVLLGKG 172

Query: 487 --PKFDVFAFGVVLLELLSGK 505
                D+++ GV+L ELL+GK
Sbjct: 173 YGKAVDIWSLGVILYELLTGK 193

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 96.1 bits (240), Expect = 6e-22
 Identities = 59/202 (29%), Positives = 99/202 (49%), Gaps = 56/202 (27%)

Query: 344 SVYRA--TIDGKVLAVKKIKED-------VT--EELRILQRINHANLVKLMG-VSSDSQG 391
            VY+A     G+++A+KKI+ +       +T   E+++LQ++ H N+V+L   V+S  +G
Sbjct: 14  QVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKG 73

Query: 392 NRFLVYEYAE---NGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA 448
           + ++V+EY +    G LD    P+ K           T SQ       +  GLQY+H + 
Sbjct: 74  SIYMVFEYMDHDLTGLLD---SPEVK----------FTESQIKCYMKQLLEGLQYLHSNG 120

Query: 449 QPSIVHRDIRTNNIQLDSRFKAKIANFSLA--------APATNDVM-------------- 486
              I+HRDI+ +NI +++    K+A+F LA        A  TN V+              
Sbjct: 121 ---ILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGAT 177

Query: 487 ---PKFDVFAFGVVLLELLSGK 505
              P+ D+++ G +L EL  GK
Sbjct: 178 RYGPEVDMWSVGCILAELFLGK 199

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 90.3 bits (225), Expect = 3e-20
 Identities = 54/206 (26%), Positives = 85/206 (41%), Gaps = 54/206 (26%)

Query: 341 IGK----SVYRAT--IDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGV 385
           +G+    SVY A     G+++AVK ++         E +  E+RIL  + H N+V+  G 
Sbjct: 8   LGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGS 67

Query: 386 SSDSQGNRFLVY-EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYM 444
             D + N   ++ EY   GSL   L    K       VI      R +    +  GL Y+
Sbjct: 68  ERDEEKNTLNIFLEYVSGGSLSSLLK---KFGKLPEPVI------R-KYTRQILEGLAYL 117

Query: 445 HEHAQPSIVHRDIRTNNIQLDSRFKAKIANF----SLAAPATNDVMPKF----------- 489
           H +    IVHRDI+  NI +DS    K+A+F     L    T +                
Sbjct: 118 HSN---GIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEV 174

Query: 490 ----------DVFAFGVVLLELLSGK 505
                     D+++ G  ++E+ +GK
Sbjct: 175 IRGEEYGRAADIWSLGCTVIEMATGK 200

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 88.4 bits (220), Expect = 1e-19
 Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 48/201 (23%)

Query: 340 SIGK----SVYRAT--IDGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVS 386
            IGK     VY+A     GK +A+K IK       E +  E++IL++  H N+VK  G S
Sbjct: 7   KIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYG-S 65

Query: 387 SDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE 446
              +   ++V E+   GSL   L   +++         LT SQ   V  ++  GL+Y+H 
Sbjct: 66  YLKKDELWIVMEFCSGGSLKDLLKSTNQT---------LTESQIAYVCKELLKGLEYLHS 116

Query: 447 HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA-----PATNDVM--------------- 486
           +    I+HRDI+  NI L S  + K+ +F L+A      A N ++               
Sbjct: 117 N---GIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGKP 173

Query: 487 --PKFDVFAFGVVLLELLSGK 505
              K D+++ G+  +EL  GK
Sbjct: 174 YDYKADIWSLGITAIELAEGK 194

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 86.3 bits (214), Expect = 6e-19
 Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 42/194 (21%)

Query: 340 SIGK----SVYRATIDGKVLAVKKIKEDVTE------ELRILQRINHANLVKLMGVSSDS 389
           +IGK     V      G+ +AVK +K+D T       E  ++  + H NLV+L+GV    
Sbjct: 13  TIGKGEFGDVMLGDYRGQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLLGVVLQG 72

Query: 390 QGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQ 449
               ++V EY   GSL  +L  + ++         +T +Q+L  ALDV  G++Y+ E   
Sbjct: 73  NP-LYIVTEYMAKGSLVDYLRSRGRA--------VITLAQQLGFALDVCEGMEYLEEK-- 121

Query: 450 PSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDV----MP----------------KF 489
            + VHRD+   N+ +     AK+++F LA  A+       +P                K 
Sbjct: 122 -NFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGKLPVKWTAPEALREKKFSTKS 180

Query: 490 DVFAFGVVLLELLS 503
           DV++FG++L E+ S
Sbjct: 181 DVWSFGILLWEIYS 194

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 84.1 bits (209), Expect = 4e-18
 Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 54/208 (25%)

Query: 341 IGK----SVYRA--TIDGKVLAVKKI---------KEDVTEELRILQRINHANLVKLMGV 385
           IGK     VY      DGK+  +K+I         +ED   E++IL+++NH N++K    
Sbjct: 8   IGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYY-- 65

Query: 386 SSDS---QGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQ 442
             +S   +G   +V EYA+ G L +    K K     G        Q L   + +   L+
Sbjct: 66  --ESFEEKGKLCIVMEYADGGDLSQ----KIKKQKKEG--KPFPEEQILDWFVQLCLALK 117

Query: 443 YMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDV----------------- 485
           Y+H      I+HRDI+  NI L S    K+ +F ++   ++ V                 
Sbjct: 118 YLHSR---KILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPEL 174

Query: 486 ---MP---KFDVFAFGVVLLELLSGKKA 507
               P   K D+++ G VL EL + K  
Sbjct: 175 CQNKPYNYKSDIWSLGCVLYELCTLKHP 202

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 81.3 bits (201), Expect = 6e-17
 Identities = 50/207 (24%), Positives = 79/207 (38%), Gaps = 56/207 (27%)

Query: 338 HYSIGKSVYRATID------GKVLAVKKIKEDVTE--------ELRILQRINHANLVKLM 383
           H+     V     D      G+ +AVK +     E        E+ IL+ ++H N+VK  
Sbjct: 16  HFG---KVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYK 72

Query: 384 GVSSDSQGNRF-LVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQ 442
           GV     G    L+ EY  +GSL  +L  + +   +          + L  +  +  G+ 
Sbjct: 73  GVCEKPGGRSLRLIMEYLPSGSLRDYL-QRHRDQINLK--------RLLLFSSQICKGMD 123

Query: 443 YMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDV----------MPKF--- 489
           Y+        +HRD+   NI ++S    KI++F LA     D            P F   
Sbjct: 124 YLGSQ---RYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYA 180

Query: 490 -------------DVFAFGVVLLELLS 503
                        DV++FGV L EL +
Sbjct: 181 PECLRTSKFSSASDVWSFGVTLYELFT 207

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 78.4 bits (194), Expect = 3e-16
 Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 52/203 (25%)

Query: 341 IGK----SVYRA--TIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGV 385
           IG+     VY+      G  +A+K+I          + + +E+ +L+ + H N+VK +G 
Sbjct: 8   IGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIG- 66

Query: 386 SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMH 445
           S ++  + +++ EYAENGSL + +        S  +V      Q L+       GL Y+H
Sbjct: 67  SIETSDSLYIILEYAENGSLRQIIKKFGPFPESLVAVYV---YQVLQ-------GLAYLH 116

Query: 446 EHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA--------------------APAT--- 482
           E     ++HRDI+  NI        K+A+F +A                    AP     
Sbjct: 117 EQ---GVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEM 173

Query: 483 NDVMPKFDVFAFGVVLLELLSGK 505
           +      D+++ G  ++ELL+G 
Sbjct: 174 SGASTASDIWSLGCTVIELLTGN 196

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 78.6 bits (194), Expect = 5e-16
 Identities = 62/207 (29%), Positives = 95/207 (45%), Gaps = 49/207 (23%)

Query: 345 VYRATI-------DGKVLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDS 389
           V+           D +++AVK +KE        D   E  +L    H N+VK  GV ++ 
Sbjct: 21  VFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEG 80

Query: 390 QGNRFLVYEYAENGSLDKWLH---PKSKSSSSSGSVIF-LTWSQRLRVALDVANGLQYMH 445
                +V+EY E+G L+K+L    P +    S  S +  LT SQ L++A+ +A+G+ Y+ 
Sbjct: 81  -DPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYL- 138

Query: 446 EHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA-TNDV-------------MP---- 487
             A    VHRD+ T N  +      KI +F ++    T D              MP    
Sbjct: 139 --ASQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESI 196

Query: 488 ---KF----DVFAFGVVLLELLS-GKK 506
              KF    DV++FGVVL E+ + GK+
Sbjct: 197 MYRKFTTESDVWSFGVVLWEIFTYGKQ 223

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 77.9 bits (193), Expect = 7e-16
 Identities = 55/199 (27%), Positives = 93/199 (46%), Gaps = 55/199 (27%)

Query: 345 VYRAT--IDGKVLAVKKIKEDVTEE------LR---ILQRINHANLVKLMGV--SSDSQG 391
           VY+A     G+++A+KKI+ D  EE      LR   +L+ + H N+VKL+ V  +     
Sbjct: 15  VYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKL- 73

Query: 392 NRFLVYEYAENGSLDKWLHPKSKSSSSSGSVI-FLTWSQRLRVALDVANGLQYMHEHAQP 450
             +LV+EY +   L K+L    +    S ++I  + + Q LR       GL Y H H   
Sbjct: 74  --YLVFEYCDM-DLKKYL--DKRPGPLSPNLIKSIMY-QLLR-------GLAYCHSH--- 117

Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSLAAPA-------TNDVM----------------- 486
            I+HRD++  NI ++     K+A+F LA          T++V+                 
Sbjct: 118 RILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTYTHEVVTLWYRAPEILLGSKHYS 177

Query: 487 PKFDVFAFGVVLLELLSGK 505
              D+++ G +  E+++GK
Sbjct: 178 TAVDIWSVGCIFAEMITGK 196

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 74.9 bits (185), Expect = 8e-15
 Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 52/199 (26%)

Query: 345 VYRA--TIDGKVLAVKKIKE------------DVTEELRILQRINHANLVKLMGVSSDSQ 390
           VY+A     G+++A+KKIK                 E+++LQ + H N++ L+ V    +
Sbjct: 16  VYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFG-HK 74

Query: 391 GNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
            N  LV+E+ E   L+K +  KS         I LT +      L    GL+Y+H +   
Sbjct: 75  SNINLVFEFME-TDLEKVIKDKS---------IVLTPADIKSYMLMTLRGLEYLHSN--- 121

Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSLAA--PATNDVM---------------------- 486
            I+HRD++ NN+ + S    K+A+F LA    + N  M                      
Sbjct: 122 WILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKMTHQVVTRWYRAPELLFGARHYG 181

Query: 487 PKFDVFAFGVVLLELLSGK 505
              D+++ G +  ELL   
Sbjct: 182 VGVDMWSVGCIFAELLLRV 200

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 53/188 (28%), Positives = 96/188 (51%), Gaps = 39/188 (20%)

Query: 351 DGKVL-AVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAE 401
           D  VL AVK ++ D ++        E++IL R++  N+ +L+GV +       ++ EY E
Sbjct: 44  DAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARLLGVCTVDP-PLCMIMEYME 102

Query: 402 NGSLDKWLHP-KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTN 460
           NG L+++L    +++S  + +   L++S  L +A  +A+G++Y+      + VHRD+ T 
Sbjct: 103 NGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESL---NFVHRDLATR 159

Query: 461 NIQLDSRFKAKIANFSLAAPA-TND--------VMP------------KF----DVFAFG 495
           N  +   +  KIA+F ++    ++D         +P            KF    DV+AFG
Sbjct: 160 NCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFG 219

Query: 496 VVLLELLS 503
           V L E+L+
Sbjct: 220 VTLWEILT 227

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 73.8 bits (182), Expect = 2e-14
 Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 30/152 (19%)

Query: 345 VYRA--TIDGKVLAVKKIKEDVTEE------------LRILQRINHANLVKLMGVSSDSQ 390
           VY+A     G+ +A+KK++  ++EE            L+ L+   H N+V+L+ V    +
Sbjct: 15  VYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPR 74

Query: 391 GNR----FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE 446
            +R     LV+E+ +   L  +L    K      ++  L   Q LR       G+ ++H 
Sbjct: 75  TDRELKLTLVFEHVDQ-DLATYLSKCPKPGLPPETIKDLMR-QLLR-------GVDFLHS 125

Query: 447 HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
           H    IVHRD++  NI + S  + KIA+F LA
Sbjct: 126 HR---IVHRDLKPQNILVTSDGQVKIADFGLA 154

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 58/192 (30%), Positives = 84/192 (43%), Gaps = 57/192 (29%)

Query: 355 LAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           +AVK + E  +E        E  I+ + NH N+V+L+GVS +    RF++ E    G L 
Sbjct: 39  VAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERL-PRFILLELMAGGDLK 97

Query: 407 KWL---HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
            +L    P+ +  SS      LT    L  A DVA G +Y+ E+     +HRDI   N  
Sbjct: 98  SFLRENRPRPERPSS------LTMKDLLFCARDVAKGCKYLEEN---HFIHRDIAARNCL 148

Query: 464 LDSRFK---AKIANFSLAAPATNDV------------------MP-----------KFDV 491
           L  +     AKIA+F +A     D+                  MP           K DV
Sbjct: 149 LTCKGPGRVAKIADFGMA----RDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDV 204

Query: 492 FAFGVVLLELLS 503
           ++FGV+L E+ S
Sbjct: 205 WSFGVLLWEIFS 216

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 72.7 bits (178), Expect = 3e-14
 Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 36/177 (20%)

Query: 352 GKVLAVKKIKEDVTE-----ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           G  +AVK IK D T      E  ++ ++ H+NLV+L+GV  + +G  ++V EY   GSL 
Sbjct: 29  GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLV 88

Query: 407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS 466
            +L  + +S         L     L+ +LDV   ++Y+  +   + VHRD+   N+ +  
Sbjct: 89  DYLRSRGRS--------VLGGDCLLKFSLDVCEAMEYLEAN---NFVHRDLAARNVLVSE 137

Query: 467 RFKAKIANFSLA--APATNDV--MP----------------KFDVFAFGVVLLELLS 503
              AK+++F L   A +T D   +P                K DV++FG++L E+ S
Sbjct: 138 DNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYS 194

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 72.2 bits (178), Expect = 4e-14
 Identities = 50/195 (25%), Positives = 79/195 (40%), Gaps = 46/195 (23%)

Query: 344 SVYRAT--IDGKVLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNR 393
            VY+      GK+ A+KKI  D  E        EL+ L+      +VK  G     +G  
Sbjct: 16  VVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAF-YKEGEI 74

Query: 394 FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIV 453
            +V EY + GSL   L    K      + I     Q       +  GL Y+H   +  I+
Sbjct: 75  SIVLEYMDGGSLADLLKKVGKIPEPVLAYIA---RQ-------ILKGLDYLH--TKRHII 122

Query: 454 HRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKF-----------------------D 490
           HRDI+ +N+ ++S+ + KIA+F ++    N +                           D
Sbjct: 123 HRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQGESYSYAAD 182

Query: 491 VFAFGVVLLELLSGK 505
           +++ G+ LLE   GK
Sbjct: 183 IWSLGLTLLECALGK 197

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 72.0 bits (177), Expect = 5e-14
 Identities = 70/280 (25%), Positives = 100/280 (35%), Gaps = 77/280 (27%)

Query: 342 GKSVYRA---TIDGKVL--AVK--------KIKEDVTEELRILQRINHANLVKLMGVSSD 388
              V R    T  GKV+  AVK         I +D  +E  I+  ++H NL++L GV   
Sbjct: 8   FGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT 67

Query: 389 SQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA 448
                 +V E A  GSL   L   +              S     A+ +ANG++Y+    
Sbjct: 68  HP--LMMVTELAPLGSLLDRLRKDALG--------HFLISTLCDYAVQIANGMRYLE--- 114

Query: 449 QPSIVHRDIRTNNIQLDSRFKAKIANFSL--AAPATND--VMP----------------- 487
               +HRD+   NI L S  K KI +F L  A P   D  VM                  
Sbjct: 115 SKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRT 174

Query: 488 -KF----DVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIR--EVLKVEEKREERLRN 539
             F    DV+ FGV L E+ + G++             W  +   ++LK  +K  ERL  
Sbjct: 175 RTFSHASDVWMFGVTLWEMFTYGEEP------------WAGLSGSQILKKIDKEGERLER 222

Query: 540 WMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVV 579
                     P      +  +   C       RP  A + 
Sbjct: 223 ----------PEACPQDIYNVMLQCWAHNPADRPTFAALR 252

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 71.7 bits (176), Expect = 7e-14
 Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 46/191 (24%)

Query: 346 YRATIDGKVLAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEY 399
           +R  ID   +A+K I+E      D  EE +++ +++H NLV+L GV +  Q   F+V EY
Sbjct: 25  WRGKID---VAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCT-KQRPIFIVTEY 80

Query: 400 AENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
             NG L  +L  +     +            L +  DV   ++Y+  +     +HRD+  
Sbjct: 81  MANGCLLNYLRERKGKLGT---------EWLLDMCSDVCEAMEYLESN---GFIHRDLAA 128

Query: 460 NNIQLDSRFKAKIANFSLAAPATND-----VMPKF-------------------DVFAFG 495
            N  +      K+++F LA    +D        KF                   DV++FG
Sbjct: 129 RNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFG 188

Query: 496 VVLLELLSGKK 506
           V++ E+ S  K
Sbjct: 189 VLMWEVFSEGK 199

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 52/208 (25%)

Query: 336 SEHYS----IGK----SVYRAT--IDGKVLAVKKI------KEDVTEELRILQRINHANL 379
            E Y     IG+     VY+AT    GK +A+KK+      KE +  E+ I++   H N+
Sbjct: 18  RELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNI 77

Query: 380 VKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVAN 439
           V     S       ++V EY + GSL   +               +   Q   V  +V  
Sbjct: 78  VDYYD-SYLVGDELWVVMEYMDGGSLTDIITQNFVR---------MNEPQIAYVCREVLQ 127

Query: 440 GLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDV------------M- 486
           GL+Y+H     +++HRDI+++NI L      K+A+F  AA  T +             M 
Sbjct: 128 GLEYLHSQ---NVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMA 184

Query: 487 ----------PKFDVFAFGVVLLELLSG 504
                     PK D+++ G++ +E+  G
Sbjct: 185 PEVIKRKDYGPKVDIWSLGIMCIEMAEG 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 68.8 bits (169), Expect = 5e-13
 Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 20/147 (13%)

Query: 344 SVYRAT--IDGKVLAVKK--IKEDVTE---ELRILQRINHANLVKLMGVSSDSQGNRFLV 396
           SVY+A     G+V+A+K   ++ED+ E   E+ IL++ +   +VK  G S     + ++V
Sbjct: 18  SVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCDSPYIVKYYG-SYFKNTDLWIV 76

Query: 397 YEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            EY   GS+   +   +K+         LT  +   +      GL+Y+H +     +HRD
Sbjct: 77  MEYCGAGSVSDIMKITNKT---------LTEEEIAAILYQTLKGLEYLHSN---KKIHRD 124

Query: 457 IRTNNIQLDSRFKAKIANFSLAAPATN 483
           I+  NI L+   +AK+A+F ++   T+
Sbjct: 125 IKAGNILLNEEGQAKLADFGVSGQLTD 151

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 69.6 bits (170), Expect = 6e-13
 Identities = 49/185 (26%), Positives = 96/185 (51%), Gaps = 39/185 (21%)

Query: 354 VLAVKKIKEDVT--------EELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
           ++AVK ++ DVT        +E++I+ R+ + N+++L+GV         ++ EY ENG L
Sbjct: 46  LVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLGVCVSDD-PLCMITEYMENGDL 104

Query: 406 DKWLHPKSKSS--SSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
           +++L  +   S  + + ++  ++ +  L +A+ +A+G++Y+   A  + VHRD+ T N  
Sbjct: 105 NQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYL---ASLNFVHRDLATRNCL 161

Query: 464 LDSRFKAKIANFSLAAPATND---------VMP------------KF----DVFAFGVVL 498
           + + +  KIA+F ++    +          V+P            KF    DV+AFGV L
Sbjct: 162 VGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTL 221

Query: 499 LELLS 503
            E+ +
Sbjct: 222 WEMFT 226

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 69.6 bits (170), Expect = 6e-13
 Identities = 75/271 (27%), Positives = 121/271 (44%), Gaps = 63/271 (23%)

Query: 356 AVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           A+K +KE  +E        EL +L ++ +H N++ L+G + +++G  ++  EYA  G+L 
Sbjct: 33  AIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLG-ACENRGYLYIAIEYAPYGNLL 91

Query: 407 KWLHPKSKS-------SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
            +L  KS+        +   G+   LT  Q L+ A DVA G+QY+ E      +HRD+  
Sbjct: 92  DFLR-KSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEK---QFIHRDLAA 147

Query: 460 NNIQLDSRFKAKIANFSLA------APATNDVMP----------------KFDVFAFGVV 497
            N+ +     +KIA+F L+         T   +P                K DV++FGV+
Sbjct: 148 RNVLVGENLASKIADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVL 207

Query: 498 LLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSL 557
           L E++S      T   G T     E+ E L  +  R E+ RN  D   E           
Sbjct: 208 LWEIVS---LGGTPYCGMTCA---ELYEKLP-QGYRMEKPRNCDDEVYE----------- 249

Query: 558 ATLARACTMDKSLSRPNMAEVVFNLSVLTQS 588
             L R C  D+   RP  A++   LS + ++
Sbjct: 250 --LMRQCWRDRPYERPPFAQISVQLSRMLEA 278

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 69.7 bits (171), Expect = 6e-13
 Identities = 59/203 (29%), Positives = 89/203 (43%), Gaps = 61/203 (30%)

Query: 345 VYRA--TIDGKVLAVKKIKED-------VT--EELRILQRINHANLVKLMGVSSDSQGNR 393
           VYRA  T  G+++A+KK++ D       ++   E+ +L  + H N+V+L  V     G  
Sbjct: 23  VYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVV---VGKH 79

Query: 394 ----FLVYEYAEN--GSL-DKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE 446
               FLV EY E    SL D    P              + SQ   + L +  GLQY+HE
Sbjct: 80  LDSIFLVMEYCEQDLASLLDNMPTP-------------FSESQVKCLMLQLLRGLQYLHE 126

Query: 447 HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---APATNDVMPK--------------- 488
           +    I+HRD++ +N+ L  +   KIA+F LA         + PK               
Sbjct: 127 NF---IIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGC 183

Query: 489 ------FDVFAFGVVLLELLSGK 505
                  D++A G +L ELL+ K
Sbjct: 184 TTYTTAIDMWAVGCILAELLAHK 206

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 68.8 bits (168), Expect = 7e-13
 Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 38/189 (20%)

Query: 344 SVYRATIDGKVLAVKKIKEDVT-----EELRILQRINHANLVKLMGVSSDSQGNRFLVYE 398
           +V +    G+ +AVK IK DVT     EE  ++ +++H NLV+L+GV        ++V E
Sbjct: 21  AVLQGEYTGQKVAVKNIKCDVTAQAFLEETAVMTKLHHKNLVRLLGVIL--HNGLYIVME 78

Query: 399 YAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIR 458
               G+L  +L  + ++  S          Q L+ +LDVA G++Y+       +VHRD+ 
Sbjct: 79  LMSKGNLVNFLRTRGRALVSV--------IQLLQFSLDVAEGMEYLESK---KLVHRDLA 127

Query: 459 TNNIQLDSRFKAKIANFSLAA----PATNDVMP----------------KFDVFAFGVVL 498
             NI +     AK+++F LA        N  +P                K DV+++GV+L
Sbjct: 128 ARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLL 187

Query: 499 LELLSGKKA 507
            E+ S  +A
Sbjct: 188 WEVFSYGRA 196

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 68.6 bits (167), Expect = 9e-13
 Identities = 68/265 (25%), Positives = 119/265 (44%), Gaps = 63/265 (23%)

Query: 356 AVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           A+K++KE  ++        EL +L ++ +H N++ L+G + + +G  +L  EYA +G+L 
Sbjct: 26  AIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLG-ACEHRGYLYLAIEYAPHGNLL 84

Query: 407 KWLHPKSKS-------SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
            +L  KS+        + ++ +   L+  Q L  A DVA G+ Y+ +      +HRD+  
Sbjct: 85  DFLR-KSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAA 140

Query: 460 NNIQLDSRFKAKIANFSLA------APATNDVMP----------------KFDVFAFGVV 497
            NI +   + AKIA+F L+         T   +P                  DV+++GV+
Sbjct: 141 RNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVL 200

Query: 498 LLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSL 557
           L E++S      T   G T     E+ E L  +  R E+  N  D   +           
Sbjct: 201 LWEIVS---LGGTPYCGMTCA---ELYEKLP-QGYRLEKPLNCDDEVYD----------- 242

Query: 558 ATLARACTMDKSLSRPNMAEVVFNL 582
             L R C  +K   RP+ A+++ +L
Sbjct: 243 --LMRQCWREKPYERPSFAQILVSL 265

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 27/144 (18%)

Query: 344 SVYRA-TID-GKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVS-SDSQG 391
            VY A  +D G+++AVK+I+         +++ +E+++L+ + H NLVK  GV     + 
Sbjct: 15  KVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKV 74

Query: 392 NRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPS 451
             F+  EY   G+L++ L          G ++     +     L +  GL Y+H H    
Sbjct: 75  YIFM--EYCSGGTLEELLE--------HGRILDEHVIRVY--TLQLLEGLAYLHSHG--- 119

Query: 452 IVHRDIRTNNIQLDSRFKAKIANF 475
           IVHRDI+  NI LD     K+ +F
Sbjct: 120 IVHRDIKPANIFLDHNGVIKLGDF 143

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 46/181 (25%)

Query: 356 AVKKIKEDVTEELR--------ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK 407
           A+K +K   +++ R        I+ + +H N+++L GV + S+    ++ EY ENGSLDK
Sbjct: 36  AIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSR-PVMIITEYMENGSLDK 94

Query: 408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR 467
           +L                T  Q + +   +A+G++Y+ E    + VHRD+   NI ++S 
Sbjct: 95  FLRENDGK---------FTVGQLVGMLRGIASGMKYLSEM---NYVHRDLAARNILVNSN 142

Query: 468 FKAKIANFSLA-----APATNDVM----------P------KF----DVFAFGVVLLELL 502
              K+++F L+     + AT              P      KF    DV++FG+V+ E++
Sbjct: 143 LVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVM 202

Query: 503 S 503
           S
Sbjct: 203 S 203

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 41/184 (22%)

Query: 351 DGKVLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAEN 402
            GK++AVK I+ ++ E        EL IL + N   +V   G +  + G+  +  EY + 
Sbjct: 25  TGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYG-AFYNNGDISICMEYMDG 83

Query: 403 GSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNI 462
           GSLDK L          G +         ++A+ V  GL Y+HE  +  I+HRD++ +NI
Sbjct: 84  GSLDKIL------KEVQGRIPERILG---KIAVAVLKGLTYLHE--KHKIIHRDVKPSNI 132

Query: 463 QLDSRFKAKIANFSLAAPATNDVMPKF---------------------DVFAFGVVLLEL 501
            ++SR + K+ +F ++    N +   F                     D+++ G+ L+EL
Sbjct: 133 LVNSRGQIKLCDFGVSGQLVNSLAKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIEL 192

Query: 502 LSGK 505
            +G+
Sbjct: 193 ATGR 196

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 49/195 (25%)

Query: 354 VLAVKKIKEDVTEELR--------ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
           ++AVK +KE+ + +++        ++   +H N+VKL+GV +       L++EY   G L
Sbjct: 37  MVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAV-GKPMCLLFEYMAYGDL 95

Query: 406 DKWLH---PKSKSSSSSGSVIF---------LTWSQRLRVALDVANGLQYMHEHAQPSIV 453
           +++L    P+++ S S  +            L+ +++L +A  VA G+ Y+ E      V
Sbjct: 96  NEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSER---KFV 152

Query: 454 HRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP------------KF--- 489
           HRD+ T N  +      KIA+F L+           + ND +P            ++   
Sbjct: 153 HRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTE 212

Query: 490 -DVFAFGVVLLELLS 503
            DV+A+GVVL E+ S
Sbjct: 213 SDVWAYGVVLWEIFS 227

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 67.7 bits (165), Expect = 2e-12
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 38/182 (20%)

Query: 356 AVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH----- 410
           A K  + D  +E++IL R+   N+++L+GV  D      ++ EY ENG L+++L      
Sbjct: 58  ANKNARNDFLKEVKILSRLKDPNIIRLLGVCVDED-PLCMITEYMENGDLNQFLSSHHLD 116

Query: 411 ----PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS 466
                 + +   +  +  +++S  L VAL +A+G++Y+   +  + VHRD+ T N  +  
Sbjct: 117 DKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYL---SSLNFVHRDLATRNCLVGE 173

Query: 467 RFKAKIANFSLAAPA-TND--------------------VMPKF----DVFAFGVVLLEL 501
               KIA+F ++      D                    +M KF    DV+AFGV L E+
Sbjct: 174 NLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEI 233

Query: 502 LS 503
           L 
Sbjct: 234 LM 235

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 66.4 bits (163), Expect = 4e-12
 Identities = 54/201 (26%), Positives = 83/201 (41%), Gaps = 50/201 (24%)

Query: 340 SIGKSVY--RATIDGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSS 387
           S GK V   R    GK+ A+K +K          E    E  IL RINH  +VKL   + 
Sbjct: 5   SFGK-VLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLH-YAF 62

Query: 388 DSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH 447
            ++   +LV EYA  G L   L  + +         F     R   A ++   L+Y+H  
Sbjct: 63  QTEEKLYLVLEYAPGGELFSHLSKEGR---------FSEERARFYAA-EIVLALEYLHSL 112

Query: 448 AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM--------------------- 486
               I++RD++  NI LD+    K+ +F LA   +++                       
Sbjct: 113 ---GIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGKG 169

Query: 487 --PKFDVFAFGVVLLELLSGK 505
                D ++ GV+L E+L+GK
Sbjct: 170 YGKAVDWWSLGVLLYEMLTGK 190

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 67.8 bits (164), Expect = 4e-12
 Identities = 53/205 (25%), Positives = 85/205 (41%), Gaps = 56/205 (27%)

Query: 345 VYRATIDGKVLAVKKIKEDVTE----------ELRILQRINHA-NLVKLMGVSSDSQGNR 393
           VY A  D K++A+K + + +            E++IL  +NH  N+VKL     D +G+ 
Sbjct: 16  VYLA-RDRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQD-EGSL 73

Query: 394 FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIV 453
           +LV EY + GSL+  L          G    L+ S+ L +   + + L+Y+H      I+
Sbjct: 74  YLVMEYVDGGSLEDLLK-------KIGRKGPLSESEALFILAQILSALEYLHSK---GII 123

Query: 454 HRDIRTNNIQLDS-RFKAKIANFSLAAPATNDVM-------------------------- 486
           HRDI+  NI LD      K+ +F LA    +                             
Sbjct: 124 HRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGL 183

Query: 487 ------PKFDVFAFGVVLLELLSGK 505
                    D+++ G+ L ELL+G 
Sbjct: 184 SLAYASSSSDIWSLGITLYELLTGL 208

Length = 384

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 66.9 bits (163), Expect = 5e-12
 Identities = 46/174 (26%), Positives = 89/174 (51%), Gaps = 30/174 (17%)

Query: 356 AVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL-HPKSK 414
           A K  + D  +E++I+ R+   N+++L+ V   S     ++ EY ENG L+++L   + +
Sbjct: 58  ANKNARNDFLKEIKIMSRLKDPNIIRLLAVCITSD-PLCMITEYMENGDLNQFLSRHEPQ 116

Query: 415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIAN 474
            ++    V+ +++S  + +A  +A+G++Y+   +  + VHRD+ T N  +   +  KIA+
Sbjct: 117 EAAEKADVVTISYSTLIFMATQIASGMKYL---SSLNFVHRDLATRNCLVGKNYTIKIAD 173

Query: 475 FSLAAPATND---------VMP------------KF----DVFAFGVVLLELLS 503
           F ++    +          V+P            KF    DV+AFGV L E+L+
Sbjct: 174 FGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILT 227

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 66.0 bits (161), Expect = 5e-12
 Identities = 72/286 (25%), Positives = 114/286 (39%), Gaps = 75/286 (26%)

Query: 339 YSIGKS----VYRAT--IDGKVLAVKKI---------KEDVTEELRILQRINHANLVKLM 383
             IGK     V++     D +V A+K+I         +E+  +E R+L +++ + +++  
Sbjct: 6   NKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYY 65

Query: 384 GVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQY 443
               D +G   +V EYAENG L K L  +         V    W    R  + +  GL +
Sbjct: 66  ESFLD-KGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQV----W----RFFIQILLGLAH 116

Query: 444 MHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA--------------------APATN 483
           +H      I+HRDI++ N+ LD+    KI +  +A                    +P   
Sbjct: 117 LHSK---KILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELC 173

Query: 484 DVMP---KFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNW 540
           +  P   K DV+A GVVL E  +GK        G  A++ K IR V              
Sbjct: 174 EDKPYNEKSDVWALGVVLYECCTGKHPFDANNQG--ALILKIIRGV-------------- 217

Query: 541 MDPNLESFYPIDGALS--LATLARACTMDKSLSRPNMAEVVFNLSV 584
                  F P+    S  LA L   C       RP+  +++ N S+
Sbjct: 218 -------FPPVSQMYSQQLAQLIDQCLTKDYRQRPDTFQLLRNPSL 256

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 66.3 bits (162), Expect = 6e-12
 Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 35/176 (19%)

Query: 359 KIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL-----HPKS 413
           K++++  +E  ++  + H N+V L+GV +  Q    L +EY  +G L ++L     H   
Sbjct: 50  KVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTCML-FEYLAHGDLHEFLVRNSPHSDV 108

Query: 414 KSSSSSGSVIFLTW-SQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI 472
            + S   +V      S  L +A+ +A G++Y+  H     VHRD+   N  +      KI
Sbjct: 109 GAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSH---HFVHRDLAARNCLVGEGLTVKI 165

Query: 473 ANFSLAAPA---------TNDVMP------------KF----DVFAFGVVLLELLS 503
           ++F L+            +  ++P            KF    D+++FGVVL E+ S
Sbjct: 166 SDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFS 221

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 65.8 bits (161), Expect = 6e-12
 Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 43/188 (22%)

Query: 345 VYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVY 397
           V+  T +G   +AVK +K      E   +E +I++++ H  LV+L  V S+ +   ++V 
Sbjct: 22  VWMGTWNGTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEE-PIYIVT 80

Query: 398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
           EY   GSL  +L         SG    L   Q + +A  +A G+ Y+      + +HRD+
Sbjct: 81  EYMSKGSLLDFLK--------SGEGKKLRLPQLVDMAAQIAEGMAYLESR---NYIHRDL 129

Query: 458 RTNNIQLDSRFKAKIANFSLAAPATNDV--------MP----------------KFDVFA 493
              NI +      KIA+F LA    +D          P                K DV++
Sbjct: 130 AARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANYGRFTIKSDVWS 189

Query: 494 FGVVLLEL 501
           FG++L E+
Sbjct: 190 FGILLTEI 197

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 66.1 bits (161), Expect = 7e-12
 Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 47/187 (25%)

Query: 352 GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRF-LVYEYAEN 402
           G+ +AVK +K         D+ +E+ IL+ + H N+VK  G+ ++  GN   L+ E+  +
Sbjct: 33  GEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPS 92

Query: 403 GSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNI 462
           GSL ++L P++K+         +   Q+L+ A+ +  G+ Y+        VHRD+   N+
Sbjct: 93  GSLKEYL-PRNKNK--------INLKQQLKYAVQICKGMDYL---GSRQYVHRDLAARNV 140

Query: 463 QLDSRFKAKIANFSLAAPATND----------------------VMPKF----DVFAFGV 496
            ++S  + KI +F L      D                      +  KF    DV++FGV
Sbjct: 141 LVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGV 200

Query: 497 VLLELLS 503
            L ELL+
Sbjct: 201 TLYELLT 207

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 44/190 (23%)

Query: 354 VLAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGS 404
            +AVK +K+D TE        E+ +++ I  H N++ L+GV +  +G  ++V EYA +G+
Sbjct: 44  TVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCT-QEGPLYVVVEYAAHGN 102

Query: 405 LDKWLH---PKSKSSSSSGSVIF---LTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIR 458
           L  +L    P  + +S          LT    +  A  VA G++++   A    +HRD+ 
Sbjct: 103 LRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFL---ASKKCIHRDLA 159

Query: 459 TNNIQLDSRFKAKIANFSLA---------APATNDVMP----------------KFDVFA 493
             N+ +      KIA+F LA            TN  +P                + DV++
Sbjct: 160 ARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWS 219

Query: 494 FGVVLLELLS 503
           FGV+L E+ +
Sbjct: 220 FGVLLWEIFT 229

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 65.6 bits (160), Expect = 1e-11
 Identities = 57/186 (30%), Positives = 81/186 (43%), Gaps = 46/186 (24%)

Query: 352 GKVLAVKKIKEDVTEELR-------ILQRINHANLVKLMGVS-SDSQGNRFLVYEYAENG 403
           G+V+AVKK++    E LR       IL+ + H N+VK  GV  S  + N  LV EY   G
Sbjct: 33  GEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVMEYLPYG 92

Query: 404 SLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
           SL  +L  K +          L   + L  A  +  G++Y+        VHRD+ T NI 
Sbjct: 93  SLRDYLQ-KHRER--------LDHRKLLLYASQICKGMEYL---GSKRYVHRDLATRNIL 140

Query: 464 LDSRFKAKIANFSLAA--PATNDVM--------PKF----------------DVFAFGVV 497
           ++S  + KI +F L    P   +          P F                DV++FGVV
Sbjct: 141 VESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVV 200

Query: 498 LLELLS 503
           L EL +
Sbjct: 201 LYELFT 206

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 45/213 (21%), Positives = 98/213 (46%), Gaps = 48/213 (22%)

Query: 334 NLSEHYSIGKS----VYRATIDG-------KVLAVKKIKE--------DVTEELRILQRI 374
           NL E  ++G+     V+ A   G        ++ VK +++        +   EL + +++
Sbjct: 6   NLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKL 65

Query: 375 NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVA 434
           +H N+V+L+G+  +++ + +++ EY + G L ++L   +KS         L+  Q++ + 
Sbjct: 66  SHKNVVRLLGLCREAEPH-YMILEYTDLGDLKQFLR-ATKSKDEKLKPPPLSTKQKVALC 123

Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND--------VM 486
             +A G+ ++        VHRD+   N  + S+ + K++  SL+    N         ++
Sbjct: 124 TQIALGMDHLSNA---RFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKLRNALI 180

Query: 487 P----------------KFDVFAFGVVLLELLS 503
           P                K DV++FGV++ E+ +
Sbjct: 181 PLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFT 213

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 65.4 bits (159), Expect = 1e-11
 Identities = 69/276 (25%), Positives = 126/276 (45%), Gaps = 67/276 (24%)

Query: 356 AVKKIKE--------DVTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           A+K++KE        D   EL +L ++  H N++ L+G + + +G  +L  EYA +G+L 
Sbjct: 38  AIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLG-ACEHRGYLYLAIEYAPHGNLL 96

Query: 407 KWLH--------PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIR 458
            +L         P    ++S+ S   L+  Q L  A DVA G+ Y+   +Q   +HRD+ 
Sbjct: 97  DFLRKSRVLETDPAFAIANSTAST--LSSQQLLHFAADVARGMDYL---SQKQFIHRDLA 151

Query: 459 TNNIQLDSRFKAKIANFSLA------APATNDVMP----------------KFDVFAFGV 496
             NI +   + AKIA+F L+         T   +P                  DV+++GV
Sbjct: 152 ARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGV 211

Query: 497 VLLELLSGKKATRTTENGKT-AVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGAL 555
           +L E++S      T   G T A L++++ +  ++E+                  P++   
Sbjct: 212 LLWEIVS---LGGTPYCGMTCAELYEKLPQGYRLEK------------------PLNCDD 250

Query: 556 SLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTET 591
            +  L R C  +K   RP+ A+++ +L+ + +  +T
Sbjct: 251 EVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKT 286

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 49/202 (24%), Positives = 81/202 (40%), Gaps = 52/202 (25%)

Query: 338 HYSIGKSVYRATIDGKVLAVKKI----KED-----VTEELRILQRINHANLVKLMGVSSD 388
           H  + K+  R T  G+ +A+KK+     E         E++ LQ   H  +VKL+ V   
Sbjct: 13  HGIVFKAKDRET--GETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPH 70

Query: 389 SQGNRF-LVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH 447
             G+ F LV EY     L + L  + +          L  +Q       +  G+ YMH +
Sbjct: 71  --GSGFVLVMEYMP-SDLSEVLRDEERP---------LPEAQVKSYMRMLLKGVAYMHAN 118

Query: 448 AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKF------------------ 489
               I+HRD++  N+ + +    KIA+F LA   + +    +                  
Sbjct: 119 ---GIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGA 175

Query: 490 -------DVFAFGVVLLELLSG 504
                  D++A G +  ELL+G
Sbjct: 176 RKYDPGVDLWAVGCIFAELLNG 197

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 63.7 bits (155), Expect = 3e-11
 Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 44/194 (22%)

Query: 355 LAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW 408
           +A+K IKE      +  EE +++ +++H  LV+L GV +  Q   ++V EY  NG L  +
Sbjct: 31  VAIKMIKEGSMSEDEFIEEAKVMMKLSHEKLVQLYGVCT-KQRPIYIVTEYMSNGCLLNY 89

Query: 409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF 468
           L    K             SQ L +  DV  G+ Y+        +HRD+   N  +D + 
Sbjct: 90  LREHGKR---------FQPSQLLEMCKDVCEGMAYLESK---QFIHRDLAARNCLVDDQG 137

Query: 469 KAKIANFSLAAPATND-----VMPKF-------------------DVFAFGVVLLELLS- 503
             K+++F L+    +D     V  KF                   DV+AFGV++ E+ S 
Sbjct: 138 CVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSL 197

Query: 504 GKKATRTTENGKTA 517
           GK       N +T 
Sbjct: 198 GKMPYERFNNSETV 211

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 64.1 bits (157), Expect = 3e-11
 Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 47/196 (23%)

Query: 344 SVYRATI--DGKVLAVKKIK------EDVTE--ELRILQRIN-HANLVKLMGVSSDSQGN 392
           SVY A     G+++A+KK+K      E+     E++ L+++N H N+VKL  V  ++   
Sbjct: 14  SVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFREN-DE 72

Query: 393 RFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSI 452
            + V+EY E G+L + L    K    S SVI     Q       +  GL ++H+H     
Sbjct: 73  LYFVFEYME-GNLYQ-LMKDRKGKPFSESVIRSIIYQ-------ILQGLAHIHKHG---F 120

Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA------APATNDVM-----------------PKF 489
            HRD++  N+ +      KIA+F LA       P T+ V                     
Sbjct: 121 FHRDLKPENLLVSGPEVVKIADFGLAREIRSRPPYTDYVSTRWYRAPEILLRSTSYSSPV 180

Query: 490 DVFAFGVVLLELLSGK 505
           D++A G ++ EL + +
Sbjct: 181 DIWALGCIMAELYTLR 196

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 26/157 (16%)

Query: 340 SIGK----SVYRA--TIDGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVS 386
            IG      VY+A     G+++A+K IK       E + +E+ +L+   H N+V   G S
Sbjct: 10  RIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFG-S 68

Query: 387 SDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE 446
              +   ++V EY   GSL                   L+  Q   V  +   GL Y+HE
Sbjct: 69  YLRRDKLWIVMEYCGGGSLQDIYQVTRGP---------LSELQIAYVCRETLKGLAYLHE 119

Query: 447 HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN 483
                 +HRDI+  NI L      K+A+F ++A  T 
Sbjct: 120 T---GKIHRDIKGANILLTEDGDVKLADFGVSAQLTA 153

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 63.8 bits (155), Expect = 4e-11
 Identities = 55/188 (29%), Positives = 82/188 (43%), Gaps = 51/188 (27%)

Query: 352 GKVLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNR--FLVYEYAE 401
           G+++AVK +K +  +        E+ IL+ + H N+VK  G  S+ QG +   L+ EY  
Sbjct: 33  GEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSE-QGGKGLQLIMEYVP 91

Query: 402 NGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNN 461
            GSL  +L PK K          L  +Q L  A  +  G+ Y+H       +HRD+   N
Sbjct: 92  LGSLRDYL-PKHK----------LNLAQLLLFAQQICEGMAYLHSQ---HYIHRDLAARN 137

Query: 462 IQLDSRFKAKIANFSLAAP----------ATNDVMPKF----------------DVFAFG 495
           + LD+    KI +F LA              +   P F                DV++FG
Sbjct: 138 VLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFG 197

Query: 496 VVLLELLS 503
           V L ELL+
Sbjct: 198 VTLYELLT 205

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 63.4 bits (155), Expect = 4e-11
 Identities = 43/190 (22%), Positives = 74/190 (38%), Gaps = 41/190 (21%)

Query: 351 DGKVLAVKKI---------KEDVTEELRILQRINHANLVKLMGVSSDSQGNR-FLVYEYA 400
           DGK+L  K+I         K+ +  E+ IL+ + H N+V+      D      ++V EY 
Sbjct: 24  DGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVMEYC 83

Query: 401 ENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMH--EHAQPSIVHRDIR 458
           E G L + L  K K         ++      R+   +   L   H       +++HRD++
Sbjct: 84  EGGDLAQ-LIQKCKKERK-----YIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLK 137

Query: 459 TNNIQLDSRFKAKIANFSLAAPATNDVM-----------------------PKFDVFAFG 495
             NI LD+    K+ +F LA    +D                          K D+++ G
Sbjct: 138 PANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLG 197

Query: 496 VVLLELLSGK 505
            ++ EL +  
Sbjct: 198 CLIYELCALS 207

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 63.4 bits (155), Expect = 5e-11
 Identities = 45/161 (27%), Positives = 65/161 (40%), Gaps = 28/161 (17%)

Query: 340 SIGKSVYRAT--IDGKVLAVK---K---IKE----DVTEELRILQRIN-HANLVKLMGVS 386
           S    V  A      K  A+K   K   IKE     V  E  +L R+N H  ++KL    
Sbjct: 13  SFST-VVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTF 71

Query: 387 SDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE 446
            D + N + V EYA NG L +++    K  S          ++       +   L+Y+H 
Sbjct: 72  QD-EENLYFVLEYAPNGELLQYIR---KYGSLDEKCTRFYAAE-------ILLALEYLHS 120

Query: 447 HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMP 487
                I+HRD++  NI LD     KI +F  A     +  P
Sbjct: 121 K---GIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSP 158

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 62.9 bits (153), Expect = 6e-11
 Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 51/202 (25%)

Query: 341 IGK----SVYRATIDGKVL-AVKKIKEDVTEELR--------ILQRINHANLVKLMGVSS 387
           IGK     VY+  + G    AVK  +  +  +L+        IL++ +H N+VKL+GV  
Sbjct: 3   IGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCV 62

Query: 388 DSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH 447
             Q   ++V E    GSL  +L  K            LT  + L+++LD A G++Y+   
Sbjct: 63  QKQ-PIYIVMELVPGGSLLTFLRKKKNR---------LTVKKLLQMSLDAAAGMEYLE-- 110

Query: 448 AQPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------------AP-ATN- 483
              + +HRD+   N  +      KI++F ++                      AP A N 
Sbjct: 111 -SKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNY 169

Query: 484 -DVMPKFDVFAFGVVLLELLSG 504
                + DV+++G++L E  S 
Sbjct: 170 GRYTSESDVWSYGILLWETFSL 191

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 63.1 bits (153), Expect = 8e-11
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 51/196 (26%)

Query: 355 LAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           +AVK +KE        D+  E  +L+++NH +++KL G  S   G   L+ EYA+ GSL 
Sbjct: 33  VAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACS-QDGPLLLIVEYAKYGSLR 91

Query: 407 KWLHPKSK--------SSSSSGSVIF------LTWSQRLRVALDVANGLQYMHEHAQPSI 452
            +L    K          + + S +       LT    +  A  ++ G+QY+   A+  +
Sbjct: 92  SFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYL---AEMKL 148

Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP---------------- 487
           VHRD+   N+ +    K KI++F L+            +   +P                
Sbjct: 149 VHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTT 208

Query: 488 KFDVFAFGVVLLELLS 503
           + DV++FGV+L E+++
Sbjct: 209 QSDVWSFGVLLWEIVT 224

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 38/196 (19%)

Query: 341 IGKSVYRATIDGKVLAVKKIKEDVT--------EELRILQRINHANLVKLMGVSSDSQGN 392
           + K V +   + +V A+K + E+ +         E  +++  N  ++V+L+GV S  Q  
Sbjct: 26  LAKGVVKGEPETRV-AIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQ-P 83

Query: 393 RFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSI 452
             +V E    G L  +L  +   + ++  +   T  + +++A ++A+G+ Y+        
Sbjct: 84  TLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAK---KF 140

Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP---------------- 487
           VHRD+   N  +      KI +F +                ++P                
Sbjct: 141 VHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTT 200

Query: 488 KFDVFAFGVVLLELLS 503
           K DV++FGVVL E+ +
Sbjct: 201 KSDVWSFGVVLWEMAT 216

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 49/197 (24%)

Query: 344 SVYRA--TIDGKVLAVKKIKEDVTE---------ELRILQRINHANLVKLMGVSSDSQGN 392
            VY+A   + G+++A+KKIK              E+++L+ +NH N++KL+ V    +G+
Sbjct: 14  VVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRH-KGD 72

Query: 393 RFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSI 452
            +LV+E+ +   L K +  + +    S  +    + Q L+       GL + H H    I
Sbjct: 73  LYLVFEFMDT-DLYKLIKDRQRGLPES-LIKSYLY-QLLQ-------GLAFCHSH---GI 119

Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMP------------------------K 488
           +HRD++  N+ +++    K+A+F LA    + V P                         
Sbjct: 120 LHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTP 179

Query: 489 FDVFAFGVVLLELLSGK 505
            D+++ G +  ELLS +
Sbjct: 180 VDIWSVGCIFAELLSRR 196

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 42/180 (23%)

Query: 352 GKVLAVKKIKEDVTE------ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
              +AVK +KED  E      E  +++ I H NLV+L+GV +  +   +++ E+   G+L
Sbjct: 31  SLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REPPFYIITEFMTYGNL 89

Query: 406 DKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD 465
             +L   ++   ++  ++++        A  +++ ++Y+ +    + +HRD+   N  + 
Sbjct: 90  LDYLRECNRQEVNAVVLLYM--------ATQISSAMEYLEKK---NFIHRDLAARNCLVG 138

Query: 466 SRFKAKIANFSLA---------------------AP---ATNDVMPKFDVFAFGVVLLEL 501
                K+A+F L+                     AP   A N    K DV+AFGV+L E+
Sbjct: 139 ENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEI 198

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 55/201 (27%), Positives = 85/201 (42%), Gaps = 54/201 (26%)

Query: 340 SIGKSVYRATIDGKVL--AVKKIKED--------VTEELRILQRINHANLVKLMGVSSDS 389
           S+ K VY     GK +  AVK +K++           E  ++ +++H  +V+L+GV    
Sbjct: 10  SVVKGVYL-MKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVC--- 65

Query: 390 QGNRF-LVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA 448
           +G    LV E A  G L K+L  + +   S               A  VA G+ Y+    
Sbjct: 66  KGEPLMLVMELAPLGPLLKYLKKRREIPVSD----LKEL------AHQVAMGMAYLESK- 114

Query: 449 QPSIVHRDIRTNNIQLDSRFKAKIANFSL--AAPATND--------------VMP----- 487
               VHRD+   N+ L +R +AKI++F +  A  A +D                P     
Sbjct: 115 --HFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINY 172

Query: 488 -KF----DVFAFGVVLLELLS 503
            KF    DV+++GV L E  S
Sbjct: 173 GKFSSKSDVWSYGVTLWEAFS 193

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 64/209 (30%)

Query: 345 VYRA--TIDGKVLAVKKIKED---------VTEELRILQRINHANLVKLMGVSSDSQ--- 390
           VY+A     G+++A+KK++ D            E++IL+++NH N+V L  + +D Q   
Sbjct: 23  VYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDAL 82

Query: 391 ------GNRFLVYEYAEN---GSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGL 441
                 G  +LV+EY ++   G L+  L   S+    S           ++  L+   GL
Sbjct: 83  DFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKS----------FMKQLLE---GL 129

Query: 442 QYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA--------APATNDVM------- 486
            Y H+    + +HRDI+ +NI L+++ + K+A+F LA         P TN V+       
Sbjct: 130 NYCHKK---NFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPP 186

Query: 487 ----------PKFDVFAFGVVLLELLSGK 505
                     P  DV++ G +L EL + K
Sbjct: 187 ELLLGEERYGPAIDVWSCGCILGELFTKK 215

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 42/185 (22%), Positives = 79/185 (42%), Gaps = 48/185 (25%)

Query: 356 AVKKIKED--------VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK 407
           A+K ++E+        + +E  ++  ++H ++V+L+G+   SQ    L+ +    G L  
Sbjct: 40  AIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLSSQ--VQLITQLMPLGCLLD 97

Query: 408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR 467
           ++        + GS   L W       + +A G+ Y+ E     +VHRD+   N+ + + 
Sbjct: 98  YVR---NHKDNIGSQYLLNWC------VQIAKGMSYLEEK---RLVHRDLAARNVLVKTP 145

Query: 468 FKAKIANFSLAA---------PATNDVMP----------------KFDVFAFGVVLLELL 502
              KI +F LA           A    +P                K DV+++GV + EL+
Sbjct: 146 QHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELM 205

Query: 503 S-GKK 506
           + G K
Sbjct: 206 TFGAK 210

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 57/196 (29%)

Query: 352 GKVLAVKKIK-------------EDVTEELRILQRINHANLVKLMGVS-SDSQGNRFLVY 397
           G ++AVK++              E + +E+R++ R+NH ++++++G +  DS  N F+  
Sbjct: 25  GTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNLFV-- 82

Query: 398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
           E+   GS+   L    K  +   +VI     Q LR       GL Y+HE+    I+HRD+
Sbjct: 83  EWMAGGSVSHLLS---KYGAFKEAVIINYTEQLLR-------GLSYLHEN---QIIHRDV 129

Query: 458 RTNNIQLDSRFK-AKIANFSLAAPATNDVM-----------------PKF---------- 489
           +  N+ +DS  +  +IA+F  AA                        P+           
Sbjct: 130 KGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSC 189

Query: 490 DVFAFGVVLLELLSGK 505
           DV++ G V++E+ + K
Sbjct: 190 DVWSVGCVIIEMATAK 205

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 50/192 (26%)

Query: 347 RATIDGKVLAVKKIK-----EDVTE----ELRILQRINHANLVKLMGVSSDSQGNRFLVY 397
           +AT  G+++A+KK K     EDV +    E+++L+++ H N+V L       +G  +LV+
Sbjct: 23  KAT--GEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFR-RKGRLYLVF 79

Query: 398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
           EY E   L+  L   S       +V    W         +   + Y H H   +I+HRDI
Sbjct: 80  EYVERTLLE--LLEASPGGLPPDAVRSYIWQ--------LLQAIAYCHSH---NIIHRDI 126

Query: 458 RTNNIQLDSRFKAKIANF----SLAAPATN-------------------DVM--PKFDVF 492
           +  NI +      K+ +F    +L A   +                   D       DV+
Sbjct: 127 KPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVW 186

Query: 493 AFGVVLLELLSG 504
           A G ++ ELL G
Sbjct: 187 AIGCIMAELLDG 198

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 60.2 bits (146), Expect = 4e-10
 Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 56/207 (27%)

Query: 341 IGK----SVYRATI---DGKVL--AVKKIK-----EDVTEELR---ILQRINHANLVKLM 383
           IGK     VY  T+   DG+ +  AVK +      E+V + L+   I++  +H N++ L+
Sbjct: 3   IGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLL 62

Query: 384 GVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQY 443
           G+   S+G+  +V  Y ++G L  ++  ++ + +    + F          L VA G++Y
Sbjct: 63  GICLPSEGSPLVVLPYMKHGDLRNFIRSETHNPTVKDLIGF---------GLQVAKGMEY 113

Query: 444 MHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA-----------TNDVMP----- 487
           +   A    VHRD+   N  LD  F  K+A+F LA              T   +P     
Sbjct: 114 L---ASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMA 170

Query: 488 -----------KFDVFAFGVVLLELLS 503
                      K DV++FGV+L EL++
Sbjct: 171 LESLQTQKFTTKSDVWSFGVLLWELMT 197

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 60.4 bits (146), Expect = 5e-10
 Identities = 52/194 (26%), Positives = 89/194 (45%), Gaps = 42/194 (21%)

Query: 351 DGKVLAVKKIKE-------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENG 403
           D  ++AVK +KE       D   E  +L  + H ++V+  GV ++ +    +V+EY  +G
Sbjct: 34  DKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGR-PLLMVFEYMRHG 92

Query: 404 SLDKWLH---PKSKSSSSSGSVIF--LTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIR 458
            L+++L    P +K  +    V    LT  Q L +A  +A+G+ Y+   A    VHRD+ 
Sbjct: 93  DLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYL---ASLHFVHRDLA 149

Query: 459 TNNIQLDSRFKAKIANFSLA---------------------APATNDVMPKF----DVFA 493
           T N  +      KI +F ++                      P  + +  KF    D+++
Sbjct: 150 TRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWS 209

Query: 494 FGVVLLELLS-GKK 506
           FGVVL E+ + GK+
Sbjct: 210 FGVVLWEIFTYGKQ 223

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 47/198 (23%), Positives = 79/198 (39%), Gaps = 43/198 (21%)

Query: 341 IGKSVYRATI--DGKVLAVKKI--------KEDVTEELRILQRINHANLVKLMGV-SSDS 389
            G SV +  +   G + A+K I        ++ +  EL I +      +VK  G    +S
Sbjct: 13  AGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDES 72

Query: 390 QGNRFLVYEYAENGSLDKWLHP-KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA 448
             +  +  EY E GSLD      K +       V+        ++A  V  GL Y+H   
Sbjct: 73  SSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVL-------GKIAESVLKGLSYLHSR- 124

Query: 449 QPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKF------------------- 489
              I+HRDI+ +NI L  + + K+ +F ++    N +   F                   
Sbjct: 125 --KIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLAGTFTGTSFYMAPERIQGKPYSI 182

Query: 490 --DVFAFGVVLLELLSGK 505
             DV++ G+ LLE+   +
Sbjct: 183 TSDVWSLGLTLLEVAQNR 200

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 60.1 bits (146), Expect = 6e-10
 Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 43/190 (22%)

Query: 345 VYRATIDGKV-LAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV 396
           V+      +V +A+K +K       +D  +E++ L+R+ H +L+ L  V S  +   +++
Sbjct: 22  VWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGE-PVYII 80

Query: 397 YEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            E  E GSL  +L       S  G V  L  +  + +A  VA G+ Y+ E    + +HRD
Sbjct: 81  TELMEKGSLLAFL------RSPEGQV--LPVASLIDMACQVAEGMAYLEEQ---NSIHRD 129

Query: 457 IRTNNIQLDSRFKAKIANFSLAAPATNDV-------MP----------------KFDVFA 493
           +   NI +      K+A+F LA     DV       +P                K DV++
Sbjct: 130 LAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAPEAASHGTFSTKSDVWS 189

Query: 494 FGVVLLELLS 503
           FG++L E+ +
Sbjct: 190 FGILLYEMFT 199

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 29/152 (19%)

Query: 345 VYRA--TIDGKVLAVKKI------KEDVTEELRILQRI-NHANLVKLMGV--SSDSQGNR 393
           VY+A     G+++A+K +      +E++ EE  IL++  NH N+    G     +  GN 
Sbjct: 22  VYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGND 81

Query: 394 ---FLVYEYAENGS---LDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH 447
              +LV E    GS   L K L  K K        I    +  LR  L    GL Y+HE+
Sbjct: 82  DQLWLVMELCGGGSVTDLVKGLRKKGKRLKEE--WI----AYILRETL---RGLAYLHEN 132

Query: 448 AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
               ++HRDI+  NI L    + K+ +F ++A
Sbjct: 133 ---KVIHRDIKGQNILLTKNAEVKLVDFGVSA 161

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 59.6 bits (145), Expect = 7e-10
 Identities = 53/187 (28%), Positives = 79/187 (42%), Gaps = 46/187 (24%)

Query: 352 GKVLAVKKI-KEDVTE---------ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAE 401
            K+ A+K + K+   E         E RILQ +NH  LV L     D + N +LV +   
Sbjct: 25  KKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEE-NMYLVVDLLL 83

Query: 402 NGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNN 461
            G L ++ H   K   S   V F  W   + +AL+      Y+H      I+HRDI+ +N
Sbjct: 84  GGDL-RY-HLSQKVKFSEEQVKF--WICEIVLALE------YLHSK---GIIHRDIKPDN 130

Query: 462 IQLDSRFKAKIANFSLAAPATNDVM------------PKF----------DVFAFGVVLL 499
           I LD +    I +F++A   T D +            P+           D ++ GV   
Sbjct: 131 ILLDEQGHVHITDFNIATKVTPDTLTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAY 190

Query: 500 ELLSGKK 506
           E L GK+
Sbjct: 191 ECLRGKR 197

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 8e-10
 Identities = 63/275 (22%), Positives = 119/275 (43%), Gaps = 67/275 (24%)

Query: 344 SVYRATIDGKVLAVK---------KIKEDVTE-ELRILQRINHANLVKLMGV---SSDSQ 390
           S+Y+   + K + ++         K+  D+TE E++ L+RI+  N++K+ G      D  
Sbjct: 35  SIYKGIFNNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDL 94

Query: 391 GNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
               L+ EY   G L + L  K K          L++  +L +A+D   GL  ++++   
Sbjct: 95  PRLSLILEYCTRGYLREVLD-KEKD---------LSFKTKLDMAIDCCKGLYNLYKYT-- 142

Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSL----AAPATNDV------------------MPK 488
           +  ++++ + +  +   +K KI    L    ++P   +V                    K
Sbjct: 143 NKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPPFKNVNFMVYFSYKMLNDIFSEYTIK 202

Query: 489 FDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF 548
            D+++ GVVL E+ +GK      EN  T  ++  I     + +    +L           
Sbjct: 203 DDIYSLGVVLWEIFTGKIPF---ENLTTKEIYDLI-----INKNNSLKL----------- 243

Query: 549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS 583
            P+D  L +  +  ACT   S+ RPN+ E+++NLS
Sbjct: 244 -PLDCPLEIKCIVEACTSHDSIKRPNIKEILYNLS 277

Length = 283

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 60.0 bits (145), Expect = 8e-10
 Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 49/200 (24%)

Query: 349 TIDGKVLAVKKIKE-------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAE 401
           T D  ++AVK +K+       D   E  +L  + H ++VK  GV  D      +V+EY +
Sbjct: 32  TKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGD-PLIMVFEYMK 90

Query: 402 NGSLDKWLHPKSKSS---------SSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSI 452
           +G L+K+L      +          + G    L  SQ L +A  +A+G+ Y+   A    
Sbjct: 91  HGDLNKFLRAHGPDAMILVDGQPRQAKGE---LGLSQMLHIASQIASGMVYL---ASQHF 144

Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA---------------------APATNDVMPKF-- 489
           VHRD+ T N  + +    KI +F ++                      P  + +  KF  
Sbjct: 145 VHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTT 204

Query: 490 --DVFAFGVVLLELLS-GKK 506
             DV++FGV+L E+ + GK+
Sbjct: 205 ESDVWSFGVILWEIFTYGKQ 224

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.8 bits (150), Expect = 8e-10
 Identities = 65/290 (22%), Positives = 123/290 (42%), Gaps = 65/290 (22%)

Query: 243 LIIPISAGGALLILLVAALVIY---NHHLQRKRVRILNRNGS-SLESADLIPMKENSKSD 298
             I  + G  L++ LVA   ++    ++L+ KRV   N +G+  L+  D    K  + +D
Sbjct: 630 FYITCTLGAFLVLALVAFGFVFIRGRNNLELKRVE--NEDGTWELQFFDSKVSKSITIND 687

Query: 299 RFEPKLAQNKLLPGVSG--YLGKPIVYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVLA 356
                  +N +  G  G  Y GK I   ++ +++                      ++  
Sbjct: 688 ILSSLKEENVISRGKKGASYKGKSIKNGMQFVVK----------------------EIND 725

Query: 357 VKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSS 416
           V  I      ++  LQ   H N+VKL+G+    +G  +L++EY E  +L + L       
Sbjct: 726 VNSIPSSEIADMGKLQ---HPNIVKLIGLCRSEKGA-YLIHEYIEGKNLSEVLRN----- 776

Query: 417 SSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK------- 469
                   L+W +R ++A+ +A  L+++H    P++V  ++    I +D + +       
Sbjct: 777 --------LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLRLSL 828

Query: 470 --------AKIANFSLAAPAT---NDVMPKFDVFAFGVVLLELLSGKKAT 508
                       + +  AP T    D+  K D++ FG++L+ELL+GK   
Sbjct: 829 PGLLCTDTKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPA 878

Length = 968

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 43/178 (24%), Positives = 80/178 (44%), Gaps = 42/178 (23%)

Query: 356 AVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL 409
           AVK +K      +D   E +I++++ H  L++L  V +  +   ++V E  + GSL ++L
Sbjct: 34  AVKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEE-PIYIVTELMKYGSLLEYL 92

Query: 410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK 469
              +  +        L   Q + +A  VA+G+ Y+      + +HRD+   N+ +     
Sbjct: 93  QGGAGRA--------LKLPQLIDMAAQVASGMAYLEAQ---NYIHRDLAARNVLVGENNI 141

Query: 470 AKIANFSLA---------------------APAT---NDVMPKFDVFAFGVVLLELLS 503
            K+A+F LA                     AP     N    K DV++FG++L E+++
Sbjct: 142 CKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVT 199

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 44/145 (30%), Positives = 79/145 (54%), Gaps = 24/145 (16%)

Query: 345 VYRA--TIDGKVLAVKKIKEDV-TE--------ELRILQRINHANLVKLMGVSSDSQGNR 393
           VY+A   + G+V+A+KKI+ D  TE        E+ +L+ +NH N+VKL+ V   ++   
Sbjct: 16  VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIH-TENKL 74

Query: 394 FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIV 453
           +LV+E+  +  L K++     +S  SG  + L  S   ++      GL + H H    ++
Sbjct: 75  YLVFEFL-HQDLKKFM----DASPLSGIPLPLIKSYLFQLL----QGLAFCHSH---RVL 122

Query: 454 HRDIRTNNIQLDSRFKAKIANFSLA 478
           HRD++  N+ +++    K+A+F LA
Sbjct: 123 HRDLKPQNLLINTEGAIKLADFGLA 147

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 38/158 (24%)

Query: 345 VYRA----TIDGKVLAVKKIKEDVTE----------ELRILQRINHANLVKLMGVS-SDS 389
           VY+A      DGK  A+KK K D  +          E+ +L+ + H N+V L+ V    +
Sbjct: 16  VYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHA 75

Query: 390 QGNRFLVYEYAENGSLDKW----LHPKSKSSSSSGSVI-FLTWSQRLRVALDVANGLQYM 444
             + +L+++YAE+   D W     H ++K  S   S++  L W Q L       NG+ Y+
Sbjct: 76  DKSVYLLFDYAEH---DLWQIIKFHRQAKRVSIPPSMVKSLLW-QIL-------NGVHYL 124

Query: 445 HEHAQPSIVHRDIRTNNIQL----DSRFKAKIANFSLA 478
           H +    ++HRD++  NI +      R   KI +  LA
Sbjct: 125 HSNW---VLHRDLKPANILVMGEGPERGVVKIGDLGLA 159

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 57.7 bits (139), Expect = 3e-09
 Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 22/143 (15%)

Query: 345 VYRATIDGKV-LAVKKIKEDVTEEL--------RILQRINHANLVKLMGVSSDSQGNRFL 395
           V++ T+  K  +AVK  KED+ +EL        RIL++ +H N+VKL+GV +  Q   ++
Sbjct: 11  VFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQ-PIYI 69

Query: 396 VYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHR 455
           V E    G    +L  K            L   Q ++ ALD A G+ Y+      + +HR
Sbjct: 70  VMELVPGGDFLSFLRKKKDE---------LKTKQLVKFALDAAAGMAYLESK---NCIHR 117

Query: 456 DIRTNNIQLDSRFKAKIANFSLA 478
           D+   N  +      KI++F ++
Sbjct: 118 DLAARNCLVGENNVLKISDFGMS 140

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 44/192 (22%)

Query: 355 LAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW 408
           +A+K I+E      D  EE +++ +++H  LV+L GV ++ +    LV+E+ E+G L  +
Sbjct: 31  VAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTE-RSPICLVFEFMEHGCLSDY 89

Query: 409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF 468
           L  +++    S   +       L + LDV  G+ Y+      +++HRD+   N  +    
Sbjct: 90  L--RAQRGKFSQETL-------LGMCLDVCEGMAYLESS---NVIHRDLAARNCLVGENQ 137

Query: 469 KAKIANFSLA--------APATNDVMP----------------KFDVFAFGVVLLELLS- 503
             K+++F +           +T    P                K DV++FGV++ E+ S 
Sbjct: 138 VVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSE 197

Query: 504 GKKATRTTENGK 515
           GK       N +
Sbjct: 198 GKTPYENRSNSE 209

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 58.1 bits (140), Expect = 3e-09
 Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 41/174 (23%)

Query: 355 LAVKKIKEDVTEELR--------ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           +A+K +K   TE+ R        I+ + +H N+++L GV +  +    ++ EY ENG+LD
Sbjct: 36  VAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFK-PAMIITEYMENGALD 94

Query: 407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS 466
           K+L       SS   V  L           +A G++Y+   +  + VHRD+   NI ++S
Sbjct: 95  KYLRDHDGEFSSYQLVGMLR---------GIAAGMKYL---SDMNYVHRDLAARNILVNS 142

Query: 467 RFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLW 520
             + K+++F L+    +D                     + T TT  GK  + W
Sbjct: 143 NLECKVSDFGLSRVLEDD--------------------PEGTYTTSGGKIPIRW 176

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 44/195 (22%)

Query: 344 SVYRAT--IDGKVLAVKKI---------KEDVTEELRILQRINHANLVKLMGVSSDSQGN 392
           SVY+     D +  A+K++         +ED   E+RIL  +NH N++       D  GN
Sbjct: 15  SVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLD--GN 72

Query: 393 RF-LVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPS 451
           +  +V EYA  G L K +  + K          +   +  R+ + +  GLQ +HE     
Sbjct: 73  KLCIVMEYAPFGDLSKAISKRKKKRK------LIPEQEIWRIFIQLLRGLQALHEQ---K 123

Query: 452 IVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDV----------MP-----------KFD 490
           I+HRD+++ NI L +    KI +  ++     ++          M            K D
Sbjct: 124 ILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAKTQIGTPHYMAPEVWKGRPYSYKSD 183

Query: 491 VFAFGVVLLELLSGK 505
           +++ G +L E+ +  
Sbjct: 184 IWSLGCLLYEMATFA 198

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 29/175 (16%)

Query: 314 SGYLGKPIVYEIEVIMESTMNLSEHYSIGKSVYRATIDGKVL---AVKKIKEDVTEELRI 370
           +G  GK        ++E+T      Y + KS     +  K+L   A    +E +  EL+I
Sbjct: 45  AGAFGK--------VVEATA-----YGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKI 91

Query: 371 LQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQ 429
           +  + NH N+V L+G  +   G   ++ EY   G L  +L  K +S        FLT   
Sbjct: 92  MSHLGNHENIVNLLGACTIG-GPILVITEYCCYGDLLNFLRRKRES--------FLTLED 142

Query: 430 RLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND 484
            L  +  VA G+ ++   A  + +HRD+   N+ L      KI +F LA    ND
Sbjct: 143 LLSFSYQVAKGMAFL---ASKNCIHRDLAARNVLLTHGKIVKICDFGLARDIMND 194

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 57.2 bits (138), Expect = 5e-09
 Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 39/177 (22%)

Query: 353 KVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK 412
           K    +K + D   E  I+ + +H N++ L GV + S+    +V EY ENGSLD +L   
Sbjct: 41  KAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSK-PVMIVTEYMENGSLDAFL--- 96

Query: 413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI 472
            +      +VI L    R      +A+G++Y+   +    VHRD+   NI ++S    K+
Sbjct: 97  -RKHDGQFTVIQLVGMLR-----GIASGMKYL---SDMGYVHRDLAARNILVNSNLVCKV 147

Query: 473 ANFSLAAPATND----------------VMP------KF----DVFAFGVVLLELLS 503
           ++F L+    +D                  P      KF    DV+++G+V+ E++S
Sbjct: 148 SDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS 204

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 57.8 bits (139), Expect = 5e-09
 Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 40/192 (20%)

Query: 351 DGKVLAVKKIKE-------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENG 403
           D  ++AVK +K+       D   E  +L  + H ++VK  GV  +      +V+EY ++G
Sbjct: 34  DKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGD-PLIMVFEYMKHG 92

Query: 404 SLDKWLH---PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTN 460
            L+K+L    P +   +       LT SQ L +A  +A G+ Y+   A    VHRD+ T 
Sbjct: 93  DLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYL---ASQHFVHRDLATR 149

Query: 461 NIQLDSRFKAKIANFSLA---------------------APATNDVMPKF----DVFAFG 495
           N  +      KI +F ++                      P  + +  KF    DV++ G
Sbjct: 150 NCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLG 209

Query: 496 VVLLELLS-GKK 506
           VVL E+ + GK+
Sbjct: 210 VVLWEIFTYGKQ 221

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 57.5 bits (140), Expect = 6e-09
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 27/143 (18%)

Query: 349 TIDGKVLAVKKIK---EDVTE------ELRILQRINHANLVKLMGVSSDSQGNRF----L 395
              G+ +A+KKI    +D+ +      E+++L+ + H N++ L+ +        F    +
Sbjct: 22  KRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYI 81

Query: 396 VYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHR 455
           V E  E   L K +  KS    +   + +  + Q LR       GL+Y+H     +++HR
Sbjct: 82  VTELMET-DLHKVI--KSPQPLTDDHIQYFLY-QILR-------GLKYLHS---ANVIHR 127

Query: 456 DIRTNNIQLDSRFKAKIANFSLA 478
           D++ +NI ++S    KI +F LA
Sbjct: 128 DLKPSNILVNSNCDLKICDFGLA 150

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 31/154 (20%)

Query: 343 KSVYRATIDGKVLAVKKI-----KE--DVT--EELRILQRINHANLVKL--MGV-----S 386
           K+    T  G+V+A+KKI     K+   +T   E++IL+++ H N+V L  M V     S
Sbjct: 26  KARQIKT--GRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKS 83

Query: 387 SDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE 446
              +G+ ++V  Y ++  L   L   S         + LT SQ     L +  G+ Y+HE
Sbjct: 84  KRKRGSVYMVTPYMDH-DLSGLLENPS---------VKLTESQIKCYMLQLLEGINYLHE 133

Query: 447 HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAP 480
           +    I+HRDI+  NI +D++   KIA+F LA P
Sbjct: 134 N---HILHRDIKAANILIDNQGILKIADFGLARP 164

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 56.7 bits (137), Expect = 8e-09
 Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 30/140 (21%)

Query: 341 IGK----SVYRA--TIDGKVLAVKKIK----------EDVTEELRILQRINHANLVK-LM 383
           IGK     VY+A   +DG+V+A+KK++          +D  +E+ +L++++H N++K L 
Sbjct: 10  IGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLA 69

Query: 384 GVSSDSQGNRFLVYEYAENGSLDKWL-HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQ 442
               +++ N  +V E A+ G L + + H K +        I+  + Q       + + L+
Sbjct: 70  SFIENNELN--IVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQ-------LCSALE 120

Query: 443 YMHEHAQPSIVHRDIRTNNI 462
           +MH      I+HRDI+  N+
Sbjct: 121 HMHSK---RIMHRDIKPANV 137

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 56.5 bits (136), Expect = 9e-09
 Identities = 49/216 (22%), Positives = 96/216 (44%), Gaps = 51/216 (23%)

Query: 340 SIGKSVYRATIDGKVLAVK---------KIKEDVTEELRILQRINHANLVKLMGVSSDSQ 390
           ++ K +Y+     K +AVK          +K+++  E  ++Q++++  +V+++G+     
Sbjct: 10  TVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICEAE- 68

Query: 391 GNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
            +  LV E AE G L+K+L  K+K          +T      +   V+ G++Y+ E    
Sbjct: 69  -SWMLVMELAELGPLNKFLQ-KNKH---------VTEKNITELVHQVSMGMKYLEET--- 114

Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND-------------------------- 484
           + VHRD+   N+ L ++  AKI++F L+     D                          
Sbjct: 115 NFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYK 174

Query: 485 VMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVL 519
              K DV++FGV++ E  S G+K  +  +  +   +
Sbjct: 175 FSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNEVTQM 210

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 32/143 (22%)

Query: 343 KSVYRATIDGKVLAVKKI--------KEDVTEELRILQRINHANLVKLMGVSSDSQGNRF 394
           K ++R T  G++ A+K I        +  +  E+ IL+ +NH N+VK   +  D  G   
Sbjct: 92  KVIHRPT--GRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMF-DHNGEIQ 148

Query: 395 LVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRL--RVALDVANGLQYMHEHAQPSI 452
           ++ E+ + GSL+             G+ I     ++    VA  + +G+ Y+H      I
Sbjct: 149 VLLEFMDGGSLE-------------GTHI---ADEQFLADVARQILSGIAYLHRR---HI 189

Query: 453 VHRDIRTNNIQLDSRFKAKIANF 475
           VHRDI+ +N+ ++S    KIA+F
Sbjct: 190 VHRDIKPSNLLINSAKNVKIADF 212

Length = 353

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 33/158 (20%), Positives = 69/158 (43%), Gaps = 30/158 (18%)

Query: 371 LQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQR 430
           L  ++H N++ ++ V  +     F++Y Y   G+L  +L  +      + +   L+  Q 
Sbjct: 62  LYGLSHQNILPILHVCIEDGEPPFVLYPYMNWGNLKLFL--QQCRLGEANNPQALSTQQL 119

Query: 431 LRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIAN---------------- 474
           + +A+ +A G+ Y+H+     ++H+DI   N  +D   + KI +                
Sbjct: 120 VHMAIQIACGMSYLHKR---GVIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLG 176

Query: 475 ---------FSLAAPATNDVMPKFDVFAFGVVLLELLS 503
                     +L +    +     DV++FGV+L EL++
Sbjct: 177 DNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMT 214

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 44/190 (23%)

Query: 345 VYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVY 397
           V+  T +G   +AVK +K      E   EE +I++++ H  LV+L  V S+     ++V 
Sbjct: 22  VWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQLYAVVSEEP--IYIVT 79

Query: 398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
           EY   GSL  +L          G    L     + +A  VA G+ Y+    + + +HRD+
Sbjct: 80  EYMSKGSLLDFL--------KDGEGRALKLPNLVDMAAQVAAGMAYIE---RMNYIHRDL 128

Query: 458 RTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVFA 493
           R+ NI +      KIA+F LA                     AP          K DV++
Sbjct: 129 RSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 188

Query: 494 FGVVLLELLS 503
           FG++L EL++
Sbjct: 189 FGILLTELVT 198

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 45/205 (21%), Positives = 79/205 (38%), Gaps = 53/205 (25%)

Query: 344 SVYRATID------GKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVS-S 387
           SV    +        KV AVK +K         E+   E   ++  +H N++KL+GV   
Sbjct: 14  SVMEGQLSQDDGSQLKV-AVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFE 72

Query: 388 DSQGNRF----LVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQY 443
            S   +     ++  + ++G L  +L      S   G    L     L+  +D+A G++Y
Sbjct: 73  ASSLQKIPKPMVILPFMKHGDLHSFLL----YSRLGGLPEKLPLQTLLKFMVDIALGMEY 128

Query: 444 MHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------------------- 478
           +   +  + +HRD+   N  L       +A+F L+                         
Sbjct: 129 L---SNRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIE 185

Query: 479 APATNDVMPKFDVFAFGVVLLELLS 503
           + A      K DV+AFGV + E+ +
Sbjct: 186 SLADRVYTSKSDVWAFGVTMWEIAT 210

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 43/179 (24%)

Query: 355 LAVKKIKEDVTE------ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW 408
           +A+K +K+          E  +++++ H  LV+L  V +  Q   +++ EY ENGSL  +
Sbjct: 33  VAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVVT--QEPIYIITEYMENGSLVDF 90

Query: 409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF 468
           L    K+         LT ++ + +A  +A G+ ++      + +HRD+R  NI +    
Sbjct: 91  L----KTPEGIK----LTINKLIDMAAQIAEGMAFIERK---NYIHRDLRAANILVSETL 139

Query: 469 KAKIANFSLA---------------------AP-ATN--DVMPKFDVFAFGVVLLELLS 503
             KIA+F LA                     AP A N      K DV++FG++L E+++
Sbjct: 140 CCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 198

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 24/142 (16%)

Query: 347 RATIDGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV 396
           R  I     A+K +           + V  E R+L+ ++H  +++L     D Q   +++
Sbjct: 21  RDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHD-QRFLYML 79

Query: 397 YEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            EY   G L  +L    + S+S+G          L  A ++   L+Y+H      IV+RD
Sbjct: 80  MEYVPGGELFSYLRNSGRFSNSTG----------LFYASEIVCALEYLHSK---EIVYRD 126

Query: 457 IRTNNIQLDSRFKAKIANFSLA 478
           ++  NI LD     K+ +F  A
Sbjct: 127 LKPENILLDKEGHIKLTDFGFA 148

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 37/152 (24%)

Query: 345 VYRA----TIDGKVLAVKKIK-EDVTE--------ELRILQRINHANLVKL----MGVSS 387
           VYRA    T  G+++A+KK+K E   E        E+ IL ++ H N+V +    +G + 
Sbjct: 21  VYRARDKKT--GEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNL 78

Query: 388 DSQGNRFLVYEYAENGSLD-KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE 446
           D     ++V EY E+   D K L    K       V  L   Q L        G+ ++H+
Sbjct: 79  DKI---YMVMEYVEH---DLKSLMETMKQPFLQSEVKCLM-LQLLS-------GVAHLHD 124

Query: 447 HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
           +    I+HRD++T+N+ L++R   KI +F LA
Sbjct: 125 N---WILHRDLKTSNLLLNNRGILKICDFGLA 153

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 46/191 (24%)

Query: 346 YRATIDGKVLAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEY 399
           +RA I    +A+K I E      D  EE +++ +++H  LV+L GV +  Q   ++V E+
Sbjct: 25  WRAQIK---VAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCT-QQKPLYIVTEF 80

Query: 400 AENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
            ENG L  +L  + +    S  ++       L +  DV  G++Y+    + S +HRD+  
Sbjct: 81  MENGCLLNYL--RQRQGKLSKDML-------LSMCQDVCEGMEYLE---RNSFIHRDLAA 128

Query: 460 NNIQLDSRFKAKIANFSLAAPATND------------------------VMPKFDVFAFG 495
            N  + S    K+++F +     +D                           K DV++FG
Sbjct: 129 RNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFG 188

Query: 496 VVLLELLSGKK 506
           V++ E+ +  K
Sbjct: 189 VLMWEVFTEGK 199

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 26/140 (18%)

Query: 351 DGKVLAVKKIK---EDVT---------EELRILQRINHANLVKLMGVSSDSQGNRFLVYE 398
           DG   AVK++    +  T         +E+ +L ++ H N+V+ +G +   + N ++  E
Sbjct: 24  DGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLG-TEREEDNLYIFLE 82

Query: 399 YAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIR 458
               GSL K L    K  S    VI L   Q L        GL+Y+H+    + VHRDI+
Sbjct: 83  LVPGGSLAKLL---KKYGSFPEPVIRLYTRQILL-------GLEYLHDR---NTVHRDIK 129

Query: 459 TNNIQLDSRFKAKIANFSLA 478
             NI +D+    K+A+F +A
Sbjct: 130 GANILVDTNGVVKLADFGMA 149

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 34/181 (18%)

Query: 347 RATIDGKVLAVKKIK-EDVTE--------ELRILQRINHANLVKLMGV--SSDSQGNR-- 393
           R     +++A+KK+  E+  E        E++ILQ + H N+V L+ +  +  +  NR  
Sbjct: 32  RHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRYK 91

Query: 394 ---FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
              +LV+E+ E+  L   L        S+ +V F T S+  +V   + NGL Y+H +   
Sbjct: 92  GSFYLVFEFCEH-DLAGLL--------SNKNVKF-TLSEIKKVMKMLLNGLYYIHRN--- 138

Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLL-----ELLSGK 505
            I+HRD++  NI +      K+A+F LA   +     K + +   VV L     ELL G+
Sbjct: 139 KILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGE 198

Query: 506 K 506
           +
Sbjct: 199 R 199

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 44/188 (23%)

Query: 345 VYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVY 397
           V+  T +G   +A+K +K      E   +E ++++++ H  LV+L  V S+     ++V 
Sbjct: 22  VWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP--IYIVT 79

Query: 398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
           EY   GSL  +L  K +         +L   Q + +A  +A+G+ Y+    + + VHRD+
Sbjct: 80  EYMSKGSLLDFL--KGEMGK------YLRLPQLVDMAAQIASGMAYVE---RMNYVHRDL 128

Query: 458 RTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVFA 493
           R  NI +      K+A+F LA                     AP          K DV++
Sbjct: 129 RAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 188

Query: 494 FGVVLLEL 501
           FG++L EL
Sbjct: 189 FGILLTEL 196

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 54.6 bits (131), Expect = 4e-08
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 44/192 (22%)

Query: 352 GKVLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENG 403
            +++A+K +K+        +  +E  ++  ++H N+V L+GV +  Q    +++EY   G
Sbjct: 34  AQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQ-PVCMLFEYLNQG 92

Query: 404 SLDKWLHPKSK------SSSSSGSV-IFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            L ++L  +S       SS   G+V   L     L +A+ +A G++Y+  H     VH+D
Sbjct: 93  DLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHF---FVHKD 149

Query: 457 IRTNNIQLDSRFKAKIANFSLAAP---------ATNDVMP------------KF----DV 491
           +   NI +  +   KI++  L+               ++P            KF    D+
Sbjct: 150 LAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDI 209

Query: 492 FAFGVVLLELLS 503
           ++FGVVL E+ S
Sbjct: 210 WSFGVVLWEIFS 221

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 54.8 bits (132), Expect = 6e-08
 Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 39/169 (23%)

Query: 340 SIGKSVYRA--TIDGKVLAVKKIK-----EDVTE----------------ELRILQRINH 376
           + GK V +A  T+ GK++A+KK+K      DVT+                EL+I+  I H
Sbjct: 21  TYGK-VEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKH 79

Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALD 436
            N++ L+ V         LV +      L K +  K          I LT SQ   + L 
Sbjct: 80  ENIMGLVDVYV-EGDFINLVMDIMA-SDLKKVVDRK----------IRLTESQVKCILLQ 127

Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDV 485
           + NGL  +H+      +HRD+   NI ++S+   KIA+F LA       
Sbjct: 128 ILNGLNVLHKW---YFMHRDLSPANIFINSKGICKIADFGLARRYGYPP 173

Length = 335

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 53.7 bits (129), Expect = 7e-08
 Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 45/187 (24%)

Query: 355 LAVKKIKEDVT--------EELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           +AVK +++  T        +E  ++   NH N+VKL+GV   ++  ++++ E  E G L 
Sbjct: 29  VAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNE-PQYIIMELMEGGDLL 87

Query: 407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNI---- 462
            +L               LT  + L + LDVA G  Y+    Q   +HRD+   N     
Sbjct: 88  SYLRDARVERFGPP---LLTLKELLDICLDVAKGCVYLE---QMHFIHRDLAARNCLVSE 141

Query: 463 -QLDSRFKAKIANFSLAAPA-TND--------VMP------------KF----DVFAFGV 496
              D+    KI +F LA     +D        ++P            KF    DV++FGV
Sbjct: 142 KGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGV 201

Query: 497 VLLELLS 503
           ++ E+L+
Sbjct: 202 LMWEILT 208

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 53.6 bits (129), Expect = 7e-08
 Identities = 45/196 (22%), Positives = 76/196 (38%), Gaps = 46/196 (23%)

Query: 345 VYRATIDGKVLAVKKI---------KEDVTEELRILQRINHANLVKLMGVSSDSQGNRFL 395
           +YR T D  ++  K++         + D   E+ IL  + H N++       D      +
Sbjct: 18  LYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDN-TLLI 76

Query: 396 VYEYAENGSL-DKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
             EYA  G+L DK +  K +                L     + + + Y+H+     I+H
Sbjct: 77  EMEYANGGTLYDKIVRQKGQ---------LFEEEMVLWYLFQIVSAVSYIHKA---GILH 124

Query: 455 RDIRTNNIQLDSRFKAKIANFSLAAPATNDVM-------------P----------KFDV 491
           RDI+T NI L      K+ +F ++    ++               P          K D+
Sbjct: 125 RDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPYYMSPELCQGVKYNFKSDI 184

Query: 492 FAFGVVLLELLSGKKA 507
           +A G VL ELL+ K+ 
Sbjct: 185 WALGCVLYELLTLKRT 200

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 38/132 (28%), Positives = 69/132 (52%), Gaps = 21/132 (15%)

Query: 355 LAVKKIKEDVTEELR--------ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           +A+K +K   TE+ R        I+ + +H N++ L GV + S+    ++ E+ ENG+LD
Sbjct: 35  VAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSR-PVMIITEFMENGALD 93

Query: 407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS 466
            +L    + +    +VI L    R      +A G++Y+ E    + VHRD+   NI ++S
Sbjct: 94  SFL----RQNDGQFTVIQLVGMLR-----GIAAGMKYLSEM---NYVHRDLAARNILVNS 141

Query: 467 RFKAKIANFSLA 478
               K+++F L+
Sbjct: 142 NLVCKVSDFGLS 153

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 28/147 (19%)

Query: 345 VYRA--TIDGKVLAVKKIK-EDVTE--------ELRILQRINHANLVKLMGVSSDSQGNR 393
           VY+A   + G+++A+KKI+ E   E        E+ +L+ +NH N+V+L+ V      N+
Sbjct: 15  VYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVV--HSENK 72

Query: 394 -FLVYEYAENGSLDKWLHPKSKSSSSSG-SVIFLTWSQRLRVALDVANGLQYMHEHAQPS 451
            +LV+E+ +   LD   +  S   +     +I     Q L+       G+ Y H H    
Sbjct: 73  LYLVFEFLD---LDLKKYMDSSPLTGLDPPLIKSYLYQLLQ-------GIAYCHSH---R 119

Query: 452 IVHRDIRTNNIQLDSRFKAKIANFSLA 478
           ++HRD++  N+ +D     K+A+F LA
Sbjct: 120 VLHRDLKPQNLLIDREGALKLADFGLA 146

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 66/279 (23%), Positives = 112/279 (40%), Gaps = 69/279 (24%)

Query: 343 KSVYRATIDGKV-LAVKKIKEDVTEELR--------ILQRINHANLVKLMGVSSDSQGNR 393
           + VY +  + K+ +AVK  K   +  +R        I+++ +H ++VKL+GV +++    
Sbjct: 24  QGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITENP--V 81

Query: 394 FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIV 453
           ++V E A  G L  +L   +K S    S+I          +  ++  L Y+        V
Sbjct: 82  WIVMELAPLGELRSYLQ-VNKYSLDLASLILY--------SYQLSTALAYLESK---RFV 129

Query: 454 HRDIRTNNIQLDSRFKAKIANFSLAA--------PATNDVMP------------KF---- 489
           HRDI   N+ + S    K+ +F L+          A+   +P            +F    
Sbjct: 130 HRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESINFRRFTSAS 189

Query: 490 DVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF 548
           DV+ FGV + E+L  G K  +  +N           +V+   E   ERL     P   + 
Sbjct: 190 DVWMFGVCMWEILMLGVKPFQGVKN----------NDVIGRIEN-GERL-----PMPPNC 233

Query: 549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ 587
            P     +L +L   C       RP   E+   LS + Q
Sbjct: 234 PP-----TLYSLMTKCWAYDPSKRPRFTELKAQLSDILQ 267

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 44/189 (23%)

Query: 355 LAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
           +AVK +K D TE        E+ +++ I  H N++ L+G  +   G  +++ EYA  G+L
Sbjct: 53  VAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT-QDGPLYVIVEYASKGNL 111

Query: 406 DKWLHPKSKS------SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
            ++L  +         + +      L++   +  A  VA G++Y+   A    +HRD+  
Sbjct: 112 REYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYL---ASKKCIHRDLAA 168

Query: 460 NNIQLDSRFKAKIANFSLA---------APATNDVMP----------------KFDVFAF 494
            N+ +      KIA+F LA            TN  +P                + DV++F
Sbjct: 169 RNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSF 228

Query: 495 GVVLLELLS 503
           GV+L E+ +
Sbjct: 229 GVLLWEIFT 237

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 43/189 (22%), Positives = 87/189 (46%), Gaps = 44/189 (23%)

Query: 355 LAVKKIKEDVTE--------ELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
           +AVK +K++ T+        E+ +++ I  H N++ L+GV +  +G  +++ EYA  G+L
Sbjct: 47  VAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCT-QEGPLYVIVEYAAKGNL 105

Query: 406 DKWLH---PKSKSSSSSGSVI---FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
            ++L    P     +   + +    L++   +  A  VA G++Y+        +HRD+  
Sbjct: 106 REFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYL---ESRRCIHRDLAA 162

Query: 460 NNIQLDSRFKAKIANFSLA---------APATNDVMP----------------KFDVFAF 494
            N+ +      KIA+F LA            +N  +P                + DV++F
Sbjct: 163 RNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSF 222

Query: 495 GVVLLELLS 503
           G+++ E+ +
Sbjct: 223 GILMWEIFT 231

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 55/203 (27%), Positives = 84/203 (41%), Gaps = 55/203 (27%)

Query: 344 SVYRA-TIDGK-VLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNR 393
            VY A  +     +A+K+I         +++ +E++ + + NH N+VK     S   G+ 
Sbjct: 16  VVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYT--SFVVGDE 73

Query: 394 -FLVYEYAENGSLDKWLHPKSKSSSSSG--SVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
            +LV  Y   GSL   L     S    G    I  T      V  +V  GL+Y+H + Q 
Sbjct: 74  LWLVMPYLSGGSL---LDIMKSSYPRGGLDEAIIAT------VLKEVLKGLEYLHSNGQ- 123

Query: 451 SIVHRDIRTNNIQLDSRFKAKIANF----SLAAPATN-----------------DVMP-- 487
             +HRDI+  NI L      KIA+F    SLA                      +VM   
Sbjct: 124 --IHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQV 181

Query: 488 -----KFDVFAFGVVLLELLSGK 505
                K D+++FG+  +EL +G 
Sbjct: 182 HGYDFKADIWSFGITAIELATGA 204

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 44/189 (23%)

Query: 355 LAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
           +AVK +K+D TE        E+ +++ I  H N++ L+G  +   G  +++ EYA  G+L
Sbjct: 50  VAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD-GPLYVIVEYASKGNL 108

Query: 406 DKWLHPKSKSSSSSGSVIF------LTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
            ++L  +          I       +T+   +     VA G++Y+   A    +HRD+  
Sbjct: 109 REYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYL---ASQKCIHRDLAA 165

Query: 460 NNIQLDSRFKAKIANFSLA---------APATNDVMP----------------KFDVFAF 494
            N+ +      KIA+F LA            TN  +P                + DV++F
Sbjct: 166 RNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSF 225

Query: 495 GVVLLELLS 503
           GV++ E+ +
Sbjct: 226 GVLMWEIFT 234

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 53/189 (28%)

Query: 352 GKVLAVKK---------IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAEN 402
           G+++A+KK         IK+    E+R+L+++ H NLV L+ V    +    LV+EY ++
Sbjct: 26  GQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKR-KLHLVFEYCDH 84

Query: 403 ---GSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
                L+K  +P+         +  + W             + + H+H   + +HRD++ 
Sbjct: 85  TVLNELEK--NPR---GVPEHLIKKIIWQ--------TLQAVNFCHKH---NCIHRDVKP 128

Query: 460 NNIQLDSRFKAKIANFSLA--------------------APA--TNDVM--PKFDVFAFG 495
            NI +  + + K+ +F  A                    AP     D    P  DV+A G
Sbjct: 129 ENILITKQGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIG 188

Query: 496 VVLLELLSG 504
            V  ELL+G
Sbjct: 189 CVFAELLTG 197

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 44/189 (23%)

Query: 355 LAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
           +AVK +K+D T+        E+ +++ I  H N++ L+G  +   G  +++ EYA  G+L
Sbjct: 47  VAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD-GPLYVLVEYASKGNL 105

Query: 406 DKWLH---PKSKSSSSSGSVI---FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
            ++L    P     S     +    LT+   +  A  VA G++Y+   A    +HRD+  
Sbjct: 106 REYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYL---ASQKCIHRDLAA 162

Query: 460 NNIQLDSRFKAKIANFSLA---------APATNDVMP----------------KFDVFAF 494
            N+ +      KIA+F LA            TN  +P                + DV++F
Sbjct: 163 RNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSF 222

Query: 495 GVVLLELLS 503
           GV+L E+ +
Sbjct: 223 GVLLWEIFT 231

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 46/185 (24%)

Query: 355 LAVKKIKED-------VTEELRILQRINHANLVKLMGVSSDSQGNRFLVY-EYAENGSLD 406
           +A+K+I E        + EE+ +   + H N+V+ +G  SDS+   F ++ E    GSL 
Sbjct: 36  IAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLG--SDSENGFFKIFMEQVPGGSLS 93

Query: 407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS 466
             L  K      +   I     Q L        GL+Y+H++    IVHRDI+ +N+ +++
Sbjct: 94  ALLRSKWGPLKDNEQTIIFYTKQILE-------GLKYLHDN---QIVHRDIKGDNVLVNT 143

Query: 467 RFKA-KIANFS----LA----------------APATNDVMPK-----FDVFAFGVVLLE 500
                KI++F     LA                AP   D  P+      D+++ G  ++E
Sbjct: 144 YSGVVKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVE 203

Query: 501 LLSGK 505
           + +GK
Sbjct: 204 MATGK 208

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 51.9 bits (124), Expect = 4e-07
 Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 38/188 (20%)

Query: 319 KPIVYEIEVIMESTMNLSEHYSIGK----SVYRAT--IDGKVLAVK------KIKEDVTE 366
              +  +E + + T       +IGK     VY+ T   DG + AVK       + E++  
Sbjct: 8   NSSMLGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEA 67

Query: 367 ELRILQRI-NHANLVKLMGV--SSD--SQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGS 421
           E  ILQ + NH N+VK  G+   +D    G  +LV E    GS+ + +            
Sbjct: 68  EYNILQSLPNHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKG---------- 117

Query: 422 VIFLTWSQRLRVAL------DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF 475
              L   QRL  A+          GLQ++H +    I+HRD++ NNI L +    K+ +F
Sbjct: 118 --LLICGQRLDEAMISYILYGALLGLQHLHNN---RIIHRDVKGNNILLTTEGGVKLVDF 172

Query: 476 SLAAPATN 483
            ++A  T+
Sbjct: 173 GVSAQLTS 180

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 51/199 (25%)

Query: 338 HYSIGKSVYRAT--IDGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGV 385
           H S G +VY A      +V+A+KK+           +D+ +E+R LQ++ H N ++  G 
Sbjct: 25  HGSFG-AVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGC 83

Query: 386 SSDSQGNRFLVYEYAENGSLDKW-LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYM 444
               +   +LV EY    + D   +H K            L   +   +      GL Y+
Sbjct: 84  YL-REHTAWLVMEYCLGSASDILEVHKKP-----------LQEVEIAAICHGALQGLAYL 131

Query: 445 HEHAQPSIVHRDIRTNNIQLDSRFKAKIANF---SLAAPATNDV-MP------------- 487
           H H +   +HRDI+  NI L      K+A+F   SL +PA + V  P             
Sbjct: 132 HSHER---IHRDIKAGNILLTEPGTVKLADFGSASLVSPANSFVGTPYWMAPEVILAMDE 188

Query: 488 -----KFDVFAFGVVLLEL 501
                K DV++ G+  +EL
Sbjct: 189 GQYDGKVDVWSLGITCIEL 207

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 51.2 bits (122), Expect = 5e-07
 Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 44/190 (23%)

Query: 345 VYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVY 397
           V+  T +G   +A+K +K      E   +E +I++++ H  LV L  V S+     ++V 
Sbjct: 22  VWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVSEEP--IYIVT 79

Query: 398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
           E+   GSL  +L          G   +L   Q + +A  +A+G+ Y+    + + +HRD+
Sbjct: 80  EFMGKGSLLDFL--------KEGDGKYLKLPQLVDMAAQIADGMAYIE---RMNYIHRDL 128

Query: 458 RTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVFA 493
           R  NI +      KIA+F LA                     AP          K DV++
Sbjct: 129 RAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 188

Query: 494 FGVVLLELLS 503
           FG++L EL++
Sbjct: 189 FGILLTELVT 198

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 51/188 (27%)

Query: 352 GKVLAVKK---------IKEDVTEELRILQRINHANLVKLMGVSSDSQGNR-FLVYEYAE 401
           G+++A+KK         +K+    E+R+L+++ H NLV L+ V    +  R +LV+E+ +
Sbjct: 26  GQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVF--RRKKRLYLVFEFVD 83

Query: 402 NGSLDKWLH-PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTN 460
           +  LD     P     S     +F    Q LR       G+++ H H   +I+HRDI+  
Sbjct: 84  HTVLDDLEKYPNGLDESRVRKYLF----QILR-------GIEFCHSH---NIIHRDIKPE 129

Query: 461 NIQLDSRFKAKIANF----SLAAPA---TNDVM-------------PKF----DVFAFGV 496
           NI +      K+ +F    +LAAP    T+ V               K+    D++A G 
Sbjct: 130 NILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGC 189

Query: 497 VLLELLSG 504
           ++ E+L+G
Sbjct: 190 LVTEMLTG 197

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 50.3 bits (120), Expect = 9e-07
 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 22/147 (14%)

Query: 340 SIGKSVYR---ATIDG--KVLAV---KKIKEDVTEELRILQRINHANLVKLMGVSSDSQG 391
            + K VY+     ID   KVL     K +++++  E  I+ ++++  +V+++GV      
Sbjct: 10  CVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEAE-- 67

Query: 392 NRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPS 451
              LV E A  G L+K+L  K    + S  V  +           V+ G++Y+      +
Sbjct: 68  ALMLVMEMASGGPLNKFLSGKKDEITVSNVVELMH---------QVSMGMKYLEGK---N 115

Query: 452 IVHRDIRTNNIQLDSRFKAKIANFSLA 478
            VHRD+   N+ L ++  AKI++F L+
Sbjct: 116 FVHRDLAARNVLLVNQHYAKISDFGLS 142

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 50.2 bits (120), Expect = 9e-07
 Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 45/201 (22%)

Query: 340 SIGKSVY-RATIDGKVLAVKKI---------KEDVTEELRILQRINHANLVKLMGVSSDS 389
           S GK++  ++  DGK   +K+I         +E+  +E+ +L  + H N+V+    S + 
Sbjct: 12  SFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQE-SFEE 70

Query: 390 QGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQ 449
            GN ++V +Y E G L K ++ +         +  L W  ++ +AL      +++H+   
Sbjct: 71  NGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQI--LDWFVQICLAL------KHVHDR-- 120

Query: 450 PSIVHRDIRTNNIQLDSRFKAKIANFSLA--------------------APATNDVMP-- 487
             I+HRDI++ NI L      K+ +F +A                    +P   +  P  
Sbjct: 121 -KILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELARTCIGTPYYLSPEICENRPYN 179

Query: 488 -KFDVFAFGVVLLELLSGKKA 507
            K D++A G VL E+ + K A
Sbjct: 180 NKSDIWALGCVLYEMCTLKHA 200

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 38/172 (22%)

Query: 359 KIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSS 418
           K KE   +E+ +L ++ H N+V     S    G  F+V EY + G L K ++ +      
Sbjct: 41  KEKEASKKEVILLAKMKHPNIVTFFA-SFQENGRLFIVMEYCDGGDLMKRINRQR----- 94

Query: 419 SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK-AKIANFSL 477
              V+F +  Q L   + ++ GL+++H+     I+HRDI++ NI L      AK+ +F +
Sbjct: 95  --GVLF-SEDQILSWFVQISLGLKHIHDR---KILHRDIKSQNIFLSKNGMVAKLGDFGI 148

Query: 478 AAPATNDVMP------------------------KFDVFAFGVVLLELLSGK 505
           A    ND M                         K D+++ G VL EL + K
Sbjct: 149 AR-QLNDSMELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLK 199

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 26/146 (17%)

Query: 344 SVY--RATIDGKVLAVKKIKED----------VTEELRILQRINHANLVKLMGVSSDSQG 391
            V+  +    G + A+K IK+           V  E  IL +     +VKL   S   + 
Sbjct: 8   RVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLY-YSFQGKK 66

Query: 392 NRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPS 451
           N +LV EY   G L   L        + GS        R+ +A ++   L+Y+H +    
Sbjct: 67  NLYLVMEYLPGGDLASLLE-------NVGS--LDEDVARIYIA-EIVLALEYLHSN---G 113

Query: 452 IVHRDIRTNNIQLDSRFKAKIANFSL 477
           I+HRD++ +NI +DS    K+ +F L
Sbjct: 114 IIHRDLKPDNILIDSNGHLKLTDFGL 139

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 55/215 (25%), Positives = 88/215 (40%), Gaps = 67/215 (31%)

Query: 341 IGKSVYR---ATID---GKVLAVKKIK---EDVTEELRILQRIN------HANLVKLMGV 385
           IGK  Y    + ID   G+ +A+KKI    E V++  RIL+ I       H ++V++  +
Sbjct: 8   IGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHI 67

Query: 386 SSDSQGNRF----LVYEYAENGSLDKWLHPKSKSS---SSSGSVIFLTWSQRLRVALDVA 438
                   F    +V+E  E+      LH   K++   +      FL   Q LR      
Sbjct: 68  MLPPSRREFKDIYVVFELMESD-----LHQVIKANDDLTPEHHQFFLY--QLLR------ 114

Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDV------------- 485
             L+Y+H     ++ HRD++  NI  ++  K KI +F LA  A ND              
Sbjct: 115 -ALKYIH---TANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATR 170

Query: 486 ---------------MPKFDVFAFGVVLLELLSGK 505
                           P  D+++ G +  E+L+GK
Sbjct: 171 WYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGK 205

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 48.9 bits (116), Expect = 3e-06
 Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 42/179 (23%)

Query: 355 LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW 408
           +AVK +K      +   EE  +++ + H  LV+L  V +  +   +++ EY   GSL  +
Sbjct: 33  VAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEE-PIYIITEYMAKGSLLDF 91

Query: 409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF 468
           L       S  G  + L   + +  +  +A G+ Y+    + + +HRD+R  N+ +    
Sbjct: 92  L------KSDEGGKVLL--PKLIDFSAQIAEGMAYIE---RKNYIHRDLRAANVLVSESL 140

Query: 469 KAKIANFSLA---------------------AP-ATN--DVMPKFDVFAFGVVLLELLS 503
             KIA+F LA                     AP A N      K DV++FG++L E+++
Sbjct: 141 MCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVT 199

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 48/188 (25%), Positives = 75/188 (39%), Gaps = 48/188 (25%)

Query: 352 GKVLAVKKIKEDVT----------EELRIL-QRINHANLVKLMGVSSDSQGNRFLVYEYA 400
            ++ AVK +K+DV            E R+L     H  L +L      ++   F V EY 
Sbjct: 20  DELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHS-CFQTKDRLFFVMEYV 78

Query: 401 ENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTN 460
             G L    H +           F         A ++  GLQ++HE     I++RD++ +
Sbjct: 79  NGGDL--MFHIQRSGRFDEPRARFY--------AAEIVLGLQFLHERG---IIYRDLKLD 125

Query: 461 NIQLDSRFKAKIANFSLA--------------------AP---ATNDVMPKFDVFAFGVV 497
           N+ LDS    KIA+F +                     AP   +     P  D +A GV+
Sbjct: 126 NVLLDSEGHIKIADFGMCKEGILGGVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVL 185

Query: 498 LLELLSGK 505
           L E+L+G+
Sbjct: 186 LYEMLAGQ 193

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 57/236 (24%), Positives = 89/236 (37%), Gaps = 88/236 (37%)

Query: 353 KVLAVKKIKEDVT--------EELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENG 403
           + +AVK +KE  T         EL+IL  I +H N+V L+G  +   G   ++ EY + G
Sbjct: 38  RTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEYCKFG 97

Query: 404 SLDKWLHPK--------------------------------SKSSSSSGSV--------- 422
           +L  +L  K                                S+SS+SSG +         
Sbjct: 98  NLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVE 157

Query: 423 ----------IFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI 472
                       LT    +  +  VA G++++   A    +HRD+   NI L      KI
Sbjct: 158 EDEEGDELYKEPLTLEDLISYSFQVARGMEFL---ASRKCIHRDLAARNILLSENNVVKI 214

Query: 473 ANFSLA----------------------APAT--NDVMP-KFDVFAFGVVLLELLS 503
            +F LA                      AP +  + V   + DV++FGV+L E+ S
Sbjct: 215 CDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFS 270

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 48.0 bits (114), Expect = 7e-06
 Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 14/117 (11%)

Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGS 421
           +++T+ +  +  ++HA +V+L+G+   +     LV + +  GSL   L    +   S   
Sbjct: 54  QEITDHMLAMGSLDHAYIVRLLGICPGASLQ--LVTQLSPLGSL---LDHVRQHRDSLDP 108

Query: 422 VIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
              L W       + +A G+ Y+ EH    +VHR++   NI L S    +IA+F +A
Sbjct: 109 QRLLNW------CVQIAKGMYYLEEH---RMVHRNLAARNILLKSDSIVQIADFGVA 156

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 47.9 bits (115), Expect = 7e-06
 Identities = 43/126 (34%), Positives = 58/126 (46%), Gaps = 15/126 (11%)

Query: 353 KVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK 412
           K++ +K++ E V  E RILQ I H  LV L G   D   N +LV EY   G L   L  K
Sbjct: 38  KIVKLKQV-EHVLNEKRILQSIRHPFLVNLYGSFQDDS-NLYLVMEYVPGGELFSHLR-K 94

Query: 413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI 472
           S       +  +         A  V   L+Y+H      IV+RD++  N+ LDS    KI
Sbjct: 95  SGRFPEPVARFY---------AAQVVLALEYLHSL---DIVYRDLKPENLLLDSDGYIKI 142

Query: 473 ANFSLA 478
            +F  A
Sbjct: 143 TDFGFA 148

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 23/139 (16%)

Query: 351 DGKVLAVKKIKEDVTEE------LR---ILQRINHANLVKLMGVSSDSQGNRFLVYEYAE 401
             +++A+K+++ D  +E      LR   +L+ + H N+V+L  V   S     LV+EY +
Sbjct: 24  THEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLH-SDKKLTLVFEYCD 82

Query: 402 NGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNN 461
              L K+    S +      ++     Q L+       GL + H H   +++HRD++  N
Sbjct: 83  Q-DLKKYF--DSCNGDIDPEIVKSFMFQLLK-------GLAFCHSH---NVLHRDLKPQN 129

Query: 462 IQLDSRFKAKIANFSLAAP 480
           + ++   + K+A+F LA  
Sbjct: 130 LLINKNGELKLADFGLARA 148

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 48.1 bits (114), Expect = 7e-06
 Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 49/204 (24%)

Query: 338 HYSIGKSVYRAT--IDGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGV 385
           H S G +VY AT     +V+AVKK+           +D+ +E++ LQ++ H N ++  G 
Sbjct: 31  HGSFG-AVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGC 89

Query: 386 SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMH 445
                   +LV EY   GS    L    K          L   +   +      GL Y+H
Sbjct: 90  YLKEH-TAWLVMEYCL-GSASDLLEVHKKP---------LQEVEIAAITHGALQGLAYLH 138

Query: 446 EHAQPSIVHRDIRTNNIQLDSRFKAKIANF---SLAAPATNDV-MP-------------- 487
            H    ++HRDI+  NI L    + K+A+F   S ++PA + V  P              
Sbjct: 139 SHN---MIHRDIKAGNILLTEPGQVKLADFGSASKSSPANSFVGTPYWMAPEVILAMDEG 195

Query: 488 ----KFDVFAFGVVLLELLSGKKA 507
               K DV++ G+  +EL   K  
Sbjct: 196 QYDGKVDVWSLGITCIELAERKPP 219

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 47.5 bits (113), Expect = 8e-06
 Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 43/185 (23%)

Query: 343 KSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAEN 402
           K V+   I  K      +++ +  EL+I+       +V   G +  ++ N  +  E+ + 
Sbjct: 36  KVVH---IGAK----SSVRKQILRELQIMHECRSPYIVSFYG-AFLNENNICMCMEFMDC 87

Query: 403 GSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMH-EHAQPSIVHRDIRTNN 461
           GSLD+      K       ++        ++A+ V  GL Y++  H    I+HRDI+ +N
Sbjct: 88  GSLDRIY---KKGGPIPVEILG-------KIAVAVVEGLTYLYNVH---RIMHRDIKPSN 134

Query: 462 IQLDSRFKAKIANFSLAAPATNDVMPKF---------------------DVFAFGVVLLE 500
           I ++SR + K+ +F ++    N +   F                     DV++ G+ ++E
Sbjct: 135 ILVNSRGQIKLCDFGVSGELINSIADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIE 194

Query: 501 LLSGK 505
           L  GK
Sbjct: 195 LALGK 199

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 47.1 bits (112), Expect = 9e-06
 Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 34/154 (22%)

Query: 344 SVYRA--TIDGKVLAVKKIK----------------EDVTEELRILQRINHANLVKLMGV 385
           SVY       G+++AVK+++                + +  E+ +L+ + H N+V+ +G 
Sbjct: 15  SVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGS 74

Query: 386 SSDSQG-NRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYM 444
           S D+   N FL  EY   GS+   L   +   +   +++     Q L+       GL Y+
Sbjct: 75  SLDADHLNIFL--EYVPGGSVAALL---NNYGAFEETLVRNFVRQILK-------GLNYL 122

Query: 445 HEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
           H      I+HRDI+  NI +D++   KI++F ++
Sbjct: 123 HNR---GIIHRDIKGANILVDNKGGIKISDFGIS 153

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 14/99 (14%)

Query: 366 EELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFL 425
           E   ++ +++H +LVKL GV      N  +V EY + G LD +LH          + + L
Sbjct: 50  ETASLMSQLSHKHLVKLYGVCV-RDEN-IMVEEYVKFGPLDVFLH-------REKNNVSL 100

Query: 426 TWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL 464
            W  +L VA  +A+ L Y+ +     +VH ++   NI +
Sbjct: 101 HW--KLDVAKQLASALHYLEDK---KLVHGNVCGKNILV 134

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 259

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 50/185 (27%), Positives = 80/185 (43%), Gaps = 46/185 (24%)

Query: 353 KVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAEN 402
           +V+A+KK+           +D+ +E++ LQRI H N ++  G     +   +LV EY   
Sbjct: 51  EVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYL-REHTAWLVMEYCL- 108

Query: 403 GSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNI 462
           GS    L    K          L   +   +      GL Y+H H   +++HRDI+  NI
Sbjct: 109 GSASDLLEVHKKP---------LQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNI 156

Query: 463 QLDSRFKAKIANF---SLAAPATNDV-MP------------------KFDVFAFGVVLLE 500
            L    + K+A+F   S+A+PA + V  P                  K DV++ G+  +E
Sbjct: 157 LLTEPGQVKLADFGSASIASPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIE 216

Query: 501 LLSGK 505
           L   K
Sbjct: 217 LAERK 221

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 27/147 (18%)

Query: 345 VYRAT--IDGKVLAVKKIK---ED------VTEELRILQRINHANLVKLMGVSSDSQGNR 393
           VY+A   +  + +A+KKI+   ED         E+ +L+ + H N+V+L  V   S+   
Sbjct: 18  VYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVH-SEKRL 76

Query: 394 FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTW-SQRLRVALDVANGLQYMHEHAQPSI 452
           +LV+EY +   LD   H  S    +    +  T+  Q LR       G+ Y H H    +
Sbjct: 77  YLVFEYLD---LDLKKHMDSSPDFAKNPRLIKTYLYQILR-------GIAYCHSH---RV 123

Query: 453 VHRDIRTNNIQLDSRFKA-KIANFSLA 478
           +HRD++  N+ +D R  A K+A+F LA
Sbjct: 124 LHRDLKPQNLLIDRRTNALKLADFGLA 150

Length = 294

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 39/170 (22%)

Query: 359 KIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSS 418
           K   +  +E  I+  ++H +LV+L+GV         LV +   +G L  ++H   +   +
Sbjct: 51  KANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQ--LVTQLMPHGCLLDYVH---EHKDN 105

Query: 419 SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            GS + L W       + +A G+ Y+ E     +VHRD+   N+ + S    KI +F LA
Sbjct: 106 IGSQLLLNW------CVQIAKGMMYLEER---RLVHRDLAARNVLVKSPNHVKITDFGLA 156

Query: 479 APATND---------VMP------------KF----DVFAFGVVLLELLS 503
                D          MP            KF    DV+++GV + EL++
Sbjct: 157 RLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMT 206

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 47/211 (22%), Positives = 94/211 (44%), Gaps = 60/211 (28%)

Query: 344 SVY--RATIDGKVLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNR 393
           +VY  R    G+++A+K+I  D  E        E+ +++ + H N+V+L  V   ++   
Sbjct: 15  TVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVI-HTENKL 73

Query: 394 FLVYEYAENGSLDKWL----HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQ 449
            LV+EY +   L K++       +   ++  S  +    Q L+       G+ + HE+  
Sbjct: 74  MLVFEYMDK-DLKKYMDTHGVRGALDPNTVKSFTY----QLLK-------GIAFCHEN-- 119

Query: 450 PSIVHRDIRTNNIQLDSRFKAKIANFSLA--------------------APATNDVM--- 486
             ++HRD++  N+ ++ R + K+A+F LA                    AP   DV+   
Sbjct: 120 -RVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNTFSNEVVTLWYRAP---DVLLGS 175

Query: 487 ----PKFDVFAFGVVLLELLSGKKATRTTEN 513
                  D+++ G ++ E+++G+     T N
Sbjct: 176 RTYSTSIDIWSVGCIMAEMITGRPLFPGTNN 206

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 37/174 (21%)

Query: 358 KKIKEDVTEELRILQRINHANLVKLM-GVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSS 416
           K  +     E ++L+ ++H N+++       D      +V EYA  G+L +++  +  S 
Sbjct: 40  KDERLAAQNECQVLKLLSHPNIIEYYENFLEDKA--LMIVMEYAPGGTLAEYIQKRCNS- 96

Query: 417 SSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR-FKAKIANF 475
                   L     L   + +   L ++H      I+HRD++T NI LD      KI +F
Sbjct: 97  -------LLDEDTILHFFVQILLALHHVHTK---LILHRDLKTQNILLDKHKMVVKIGDF 146

Query: 476 SLA-------------------APATNDVMP---KFDVFAFGVVLLELLSGKKA 507
            ++                   +P   +  P   K D++A G VL EL S K+A
Sbjct: 147 GISKILSSKSKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRA 200

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 34/167 (20%)

Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSS 419
           I+  +  EL++L   N   +V   G    S G   +  E+ + GSLD+ L    +     
Sbjct: 46  IRNQIIRELQVLHECNSPYIVGFYGAFY-SDGEISICMEHMDGGSLDQVLKEAKRIPEEI 104

Query: 420 GSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                       +V++ V  GL Y+ E  Q  I+HRD++ +NI ++SR + K+ +F ++ 
Sbjct: 105 LG----------KVSIAVLRGLAYLREKHQ--IMHRDVKPSNILVNSRGEIKLCDFGVSG 152

Query: 480 PATNDVMPKF---------------------DVFAFGVVLLELLSGK 505
              + +   F                     D+++ G+ L+EL  G+
Sbjct: 153 QLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGR 199

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 13/118 (11%)

Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGS 421
           ED   E+ IL    H N+V L       +   +++ E+ + G+LD  +    +       
Sbjct: 47  EDFMVEIDILSECKHPNIVGLYEAYF-YENKLWILIEFCDGGALDSIMLELERG------ 99

Query: 422 VIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
              LT  Q   V   +   L ++H H    ++HRD++  NI L      K+A+F ++A
Sbjct: 100 ---LTEPQIRYVCRQMLEALNFLHSH---KVIHRDLKAGNILLTLDGDVKLADFGVSA 151

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 85/223 (38%)

Query: 341 IGKS----VYRATID---GKVLAVKKIKE---DVTE------ELRILQRI-NHANLVKLM 383
           +GK     V++A ID    +V+A+KKI +   + T+      E+  LQ + +H N+VKL+
Sbjct: 15  LGKGAYGIVWKA-IDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLL 73

Query: 384 GV-SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVI-----------FLTWSQRL 431
            V  +++  + +LV+EY E    D  LH          +VI           ++ + Q L
Sbjct: 74  NVIKAENDKDIYLVFEYMET---D--LH----------AVIRANILEDVHKRYIMY-QLL 117

Query: 432 RVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA-------APATND 484
           +        L+Y+H     +++HRD++ +NI L+S  + K+A+F LA           N 
Sbjct: 118 K-------ALKYIHSG---NVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENP 167

Query: 485 VMPKF----------------------DVFAFGVVLLELLSGK 505
           V+  +                      D+++ G +L E+L GK
Sbjct: 168 VLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGK 210

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 47/195 (24%), Positives = 73/195 (37%), Gaps = 50/195 (25%)

Query: 344 SVYRA--TIDGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQG 391
           SVY A     G   A+K +K+          +V  E  I+     +  V  +  S  S+ 
Sbjct: 11  SVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKD 70

Query: 392 NRFLVYEYAENG---SLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA 448
             +LV EY   G   SL K L                 W+++     +V  G++ +H   
Sbjct: 71  YLYLVMEYLNGGDCASLIKTLGGLP-----------EDWAKQY--IAEVVLGVEDLH--- 114

Query: 449 QPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------APAT---NDVMPKF 489
           Q  I+HRDI+  N+ +D     K+ +F L+                AP T          
Sbjct: 115 QRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLENKKFVGTPDYLAPETILGVGDDKMS 174

Query: 490 DVFAFGVVLLELLSG 504
           D ++ G V+ E L G
Sbjct: 175 DWWSLGCVIFEFLFG 189

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 45/199 (22%), Positives = 84/199 (42%), Gaps = 51/199 (25%)

Query: 339 YSIGKSVYRA--TIDGKVLAVKKIKEDVT--------EELRILQRINHANLVKLMGVSSD 388
           +  G +VY+A   +  ++LAVK I  D+T         EL IL + +   ++   G    
Sbjct: 11  HGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFV 70

Query: 389 SQGNRF-LVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH 447
              NR  +  E+ + GSLD +   +       G           R+A+ V  GL Y+   
Sbjct: 71  E--NRISICTEFMDGGSLDVY---RKIPEHVLG-----------RIAVAVVKGLTYLW-- 112

Query: 448 AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKF------------------ 489
               I+HRD++ +N+ +++R + K+ +F ++    N +   +                  
Sbjct: 113 -SLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIAKTYVGTNAYMAPERISGEQYG 171

Query: 490 ---DVFAFGVVLLELLSGK 505
              DV++ G+  +EL  G+
Sbjct: 172 IHSDVWSLGISFMELALGR 190

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 21/140 (15%)

Query: 347 RATIDGKVLAVKKIKEDVTEEL--------RILQRINHANLVKLMGVSSDSQGNRFLVYE 398
           R   D   +AVK  +E +  +L        RIL++ +H N+V+L+GV +  Q   ++V E
Sbjct: 15  RLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQ-PIYIVME 73

Query: 399 YAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIR 458
             + G    +L  +            L   + +++  + A G++Y+        +HRD+ 
Sbjct: 74  LVQGGDFLTFLRTEGPR---------LKVKELIQMVENAAAGMEYLESK---HCIHRDLA 121

Query: 459 TNNIQLDSRFKAKIANFSLA 478
             N  +  +   KI++F ++
Sbjct: 122 ARNCLVTEKNVLKISDFGMS 141

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 32/145 (22%), Positives = 66/145 (45%), Gaps = 13/145 (8%)

Query: 341 IGKSVYRATIDGKVLAVKKIKEDVT--------EELRILQRINHANLVKLMGVSSDSQGN 392
           I K V +   + +V A+K + E  +         E  +++  N  ++V+L+GV S  Q  
Sbjct: 26  IAKGVVKDEPETRV-AIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPT 84

Query: 393 RFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSI 452
             ++ E    G L  +L        ++      +  + +++A ++A+G+ Y++ +     
Sbjct: 85  -LVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNAN---KF 140

Query: 453 VHRDIRTNNIQLDSRFKAKIANFSL 477
           VHRD+   N  +   F  KI +F +
Sbjct: 141 VHRDLAARNCMVAEDFTVKIGDFGM 165

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 30/153 (19%)

Query: 344 SVYRAT--IDGKVLAVKKIKEDVTEE------------LRILQRINHANLVKLMGVSSDS 389
           +VY+A     G  +A+K ++    E+            L+ L+  +H N+V+LM V + S
Sbjct: 15  TVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATS 74

Query: 390 QGNR----FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMH 445
           + +R     LV+E+ +   L  +L  K          I     Q LR       GL ++H
Sbjct: 75  RTDRETKVTLVFEHVDQ-DLRTYLD-KVPPPGLPAETIKDLMRQFLR-------GLDFLH 125

Query: 446 EHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            +    IVHRD++  NI + S  + K+A+F LA
Sbjct: 126 ANC---IVHRDLKPENILVTSGGQVKLADFGLA 155

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 34/146 (23%)

Query: 352 GKVLAVKKIKEDVTEE------------LRILQRINHANLVKLMGVSSDSQGNR----FL 395
           G+ +A+K+++    EE            LR L+   H N+V+L  V + S+ +R     L
Sbjct: 27  GRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTL 86

Query: 396 VYEYAENG---SLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSI 452
           V+E+ +      LDK   P   + +               +   +  GL ++H H    +
Sbjct: 87  VFEHVDQDLTTYLDKVPEPGVPTETIKD------------MMFQLLRGLDFLHSH---RV 131

Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA 478
           VHRD++  NI + S  + K+A+F LA
Sbjct: 132 VHRDLKPQNILVTSSGQIKLADFGLA 157

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 23/147 (15%)

Query: 345 VYRA--TIDGKVLAVKKIKED-------VTEELRILQRINHANLVKLMGVSSDSQGNRFL 395
           VY+A     G++ AVK IK +       + +E+ +++   H N+V   G S  S+   ++
Sbjct: 25  VYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFG-SYLSREKLWI 83

Query: 396 VYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHR 455
             EY   GSL    H              L+  Q   V  +   GL Y+H   +   +HR
Sbjct: 84  CMEYCGGGSLQDIYHVTGP----------LSELQIAYVCRETLQGLAYLHSKGK---MHR 130

Query: 456 DIRTNNIQLDSRFKAKIANFSLAAPAT 482
           DI+  NI L      K+A+F +AA  T
Sbjct: 131 DIKGANILLTDNGDVKLADFGVAAKIT 157

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 39/162 (24%)

Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFL-VYEYAENGSLDKWLHPKSKSSSSSGSVIFL 425
           E   L + +H+N+V+L GV +  +GN  + V EY  NG+LD +L               L
Sbjct: 56  EALTLGQFDHSNIVRLEGVIT--RGNTMMIVTEYMSNGALDSFLRKHEGQ---------L 104

Query: 426 TWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFS--------- 476
              Q + +   +A+G++Y+ E      VH+ +  + + ++S    KI+ F          
Sbjct: 105 VAGQLMGMLPGLASGMKYLSEMG---YVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEA 161

Query: 477 ------------LAAPAT---NDVMPKFDVFAFGVVLLELLS 503
                        AAP     +      DV++FG+V+ E++S
Sbjct: 162 IYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMS 203

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 18/142 (12%)

Query: 345 VYRATIDGKVLAVKKIKEDVT--EELRILQR------INHANLVKLMGVSSDSQGNRFLV 396
            +R     +V+ VK+++   T  E+L  LQ       +NH N+++ +G   +S     LV
Sbjct: 16  AHRGMSKARVV-VKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESI-PYLLV 73

Query: 397 YEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            E+   G L  +L       +       L      R+A +VA+GL ++H   Q   +H D
Sbjct: 74  LEFCPLGDLKNYLRSNRGMVAQMAQKDVL-----QRMACEVASGLLWLH---QADFIHSD 125

Query: 457 IRTNNIQLDSRFKAKIANFSLA 478
           +   N QL +    KI ++ LA
Sbjct: 126 LALRNCQLTADLSVKIGDYGLA 147

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 22/163 (13%)

Query: 324 EIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTE--------ELRILQRIN 375
           EIEV+ E  +    + S+ K ++R T  G  +A+K+I+ ++ E        EL IL +  
Sbjct: 2   EIEVLDE--LGKGNYGSVYKVLHRPT--GVTMAMKEIRLELDESKFNQIIMELDILHKAV 57

Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVAL 435
              +V   G     +G  ++  EY + GSLDK       +      V+        R+  
Sbjct: 58  SPYIVDFYGAFF-IEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVL-------RRITY 109

Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            V  GL+++ E  + +I+HRD++  N+ ++   + K+ +F ++
Sbjct: 110 AVVKGLKFLKE--EHNIIHRDVKPTNVLVNGNGQVKLCDFGVS 150

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 30/145 (20%)

Query: 346 YRATIDGKVLAVKKIK----------EDVTEELRILQRIN---HANLVKLMGVSSDSQGN 392
           Y+ T  G++ A+K +K          E +  E RI +  N   H  LV L         +
Sbjct: 20  YKKT--GELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTED-H 76

Query: 393 RFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSI 452
              V EYA  G L   +H  +   S   +V +         A  V  GLQY+HE+    I
Sbjct: 77  VCFVMEYAAGGDL--MMHIHTDVFSEPRAVFY---------AACVVLGLQYLHEN---KI 122

Query: 453 VHRDIRTNNIQLDSRFKAKIANFSL 477
           V+RD++ +N+ LD+    KIA+F L
Sbjct: 123 VYRDLKLDNLLLDTEGFVKIADFGL 147

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 45.4 bits (107), Expect = 4e-05
 Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 22/140 (15%)

Query: 347 RATIDGKVLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNRFLVYE 398
           R+ +   ++A+K+I+ +  E        E+ +L+ + HAN+V L  +   ++    LV+E
Sbjct: 25  RSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIH-TERCLTLVFE 83

Query: 399 YAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIR 458
           Y ++  L ++L       S     IF+   Q LR       GL Y H+     I+HRD++
Sbjct: 84  YLDS-DLKQYLDNCGNLMSMHNVKIFMF--QLLR-------GLSYCHKR---KILHRDLK 130

Query: 459 TNNIQLDSRFKAKIANFSLA 478
             N+ ++ + + K+A+F LA
Sbjct: 131 PQNLLINEKGELKLADFGLA 150

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 43/186 (23%), Positives = 86/186 (46%), Gaps = 49/186 (26%)

Query: 352 GKVLAVKKI-------KEDVTEELRILQRINHANLVKLMGVSSDSQGNR-FLVYEYAENG 403
           G+ +AVKK+       +E +  E+ I++   H N+V++   SS   G+  ++V E+ E G
Sbjct: 44  GRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMY--SSYLVGDELWVVMEFLEGG 101

Query: 404 SL-DKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNI 462
           +L D   H +            +   Q   V L V   L ++H      ++HRDI++++I
Sbjct: 102 ALTDIVTHTR------------MNEEQIATVCLAVLKALSFLHAQG---VIHRDIKSDSI 146

Query: 463 QLDSRFKAKIANFSLAAPATNDV------------M-----------PKFDVFAFGVVLL 499
            L S  + K+++F   A  + +V            M            + D+++ G++++
Sbjct: 147 LLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVI 206

Query: 500 ELLSGK 505
           E++ G+
Sbjct: 207 EMVDGE 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 46.4 bits (110), Expect = 5e-05
 Identities = 48/199 (24%), Positives = 78/199 (39%), Gaps = 56/199 (28%)

Query: 352 GKVLAVKKIKEDVTEELRILQR----------INHANLVKLMGVSSDSQGNRFLVYEYAE 401
           G  +A+K ++ D  EE     R          + H N+V L+       G  F V+EY  
Sbjct: 3   GHEVAIKLLRTDAPEEEHQRARFRRETALCARLYHPNIVALLDSGEAPPGLLFAVFEYVP 62

Query: 402 NGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNN 461
             +L + L       ++ G+   L   +  R+ L V + L     H Q  IVHRD++  N
Sbjct: 63  GRTLREVL-------AADGA---LPAGETGRLMLQVLDALA--CAHNQ-GIVHRDLKPQN 109

Query: 462 IQL---DSRFKAKIANFSLAA--PATND----------------------------VMPK 488
           I +     R  AK+ +F +    P   D                            V P 
Sbjct: 110 IMVSQTGVRPHAKVLDFGIGTLLPGVRDADVATLTRTTEVLGTPTYCAPEQLRGEPVTPN 169

Query: 489 FDVFAFGVVLLELLSGKKA 507
            D++A+G++ LE L+G++ 
Sbjct: 170 SDLYAWGLIFLECLTGQRV 188

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 45.4 bits (107), Expect = 5e-05
 Identities = 45/187 (24%), Positives = 86/187 (45%), Gaps = 51/187 (27%)

Query: 352 GKVLAVKKI-------KEDVTEELRILQRINHANLVKLMGVSSDSQGNR-FLVYEYAENG 403
           GK +AVKK+       +E +  E+ I++  +H N+V +   +S   G+  ++V E+ E G
Sbjct: 47  GKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMY--NSYLVGDELWVVMEFLEGG 104

Query: 404 SL-DKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNI 462
           +L D   H +            +   Q   V L V   L Y+H      ++HRDI++++I
Sbjct: 105 ALTDIVTHTR------------MNEEQIATVCLSVLRALSYLHNQG---VIHRDIKSDSI 149

Query: 463 QLDSRFKAKIANFSLAAPATNDVMPK------------------------FDVFAFGVVL 498
            L S  + K+++F   A  + +V PK                         D+++ G+++
Sbjct: 150 LLTSDGRIKLSDFGFCAQVSKEV-PKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMV 208

Query: 499 LELLSGK 505
           +E++ G+
Sbjct: 209 IEMIDGE 215

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

 Score = 45.4 bits (107), Expect = 5e-05
 Identities = 56/244 (22%), Positives = 86/244 (35%), Gaps = 98/244 (40%)

Query: 353 KVLAVKKIKEDVT--------EELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENG 403
           + +AVK +KE  T         EL+IL  I +H N+V L+G  +   G   ++ E+ + G
Sbjct: 38  RTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFG 97

Query: 404 SLDKWLHPK-------------------------------------SKSSSSSGSV---- 422
           +L  +L  K                                     S+SS+SSG V    
Sbjct: 98  NLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKS 157

Query: 423 ----------------IFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS 466
                             LT    +  +  VA G++++   A    +HRD+   NI L  
Sbjct: 158 LSDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSE 214

Query: 467 RFKAKIANFSLAAPATNDVMPKF---------------------------DVFAFGVVLL 499
               KI +F LA     D  P +                           DV++FGV+L 
Sbjct: 215 NNVVKICDFGLARDIYKD--PDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLW 272

Query: 500 ELLS 503
           E+ S
Sbjct: 273 EIFS 276

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 45.0 bits (106), Expect = 5e-05
 Identities = 47/217 (21%), Positives = 94/217 (43%), Gaps = 59/217 (27%)

Query: 340 SIGKSVYRATIDGKV--------LAVKKIK---------EDVTEELRILQRINHANLVKL 382
           ++G+  + + ++G++        +AVK +K         ED   E   ++  +H N+++L
Sbjct: 6   TLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRL 65

Query: 383 MGV---SSDSQG--NRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDV 437
           +GV   + +S+G  +  ++  + ++G L  +L      S       +L     ++   D+
Sbjct: 66  IGVCLQTVESEGYPSPVVILPFMKHGDLHSFL----LYSRLGDCPQYLPTQMLVKFMTDI 121

Query: 438 ANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN---------DVMP- 487
           A+G++Y+   +  S +HRD+   N  L+      +A+F L+    N           MP 
Sbjct: 122 ASGMEYL---SSKSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPV 178

Query: 488 ---------------KFDVFAFGVVLLELLSGKKATR 509
                          K DV++FGV + E+     ATR
Sbjct: 179 KWIAIESLADRVYTTKSDVWSFGVTMWEI-----ATR 210

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 45.0 bits (106), Expect = 6e-05
 Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 35/175 (20%)

Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL---HPKSKSS 416
           ++E+   E  +  R+ H N+V L+GV +  Q    +++ Y  +  L ++L    P S   
Sbjct: 51  LREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLS-MIFSYCSHSDLHEFLVMRSPHSDVG 109

Query: 417 SSSGSVIF---LTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIA 473
           S+         L  +  + +   +A G++++  H    +VH+D+ T N+ +  +   KI+
Sbjct: 110 STDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSH---HVVHKDLATRNVLVFDKLNVKIS 166

Query: 474 NFSL-----AAP----ATNDVMP------------KF----DVFAFGVVLLELLS 503
           +  L     AA       N ++P            KF    D++++GVVL E+ S
Sbjct: 167 DLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFS 221

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 34/167 (20%)

Query: 324 EIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTE---------ELRILQRI 374
           +IE I E T  +     + K   + T  G+++A+KKI+ +  E         E+ +L+ +
Sbjct: 4   KIEKIGEGTYGV-----VYKGRNKKT--GQIVAMKKIRLESEEEGVPSTAIREISLLKEL 56

Query: 375 NHANLVKLMGVSSDSQGNR-FLVYEYAENGSLDKWLH--PKSKSSSSSGSVIFLTWSQRL 431
            H N+V L  V    Q +R +L++E+     L K+L   PK +   +     +L      
Sbjct: 57  QHPNIVCLQDVLM--QESRLYLIFEFLSM-DLKKYLDSLPKGQYMDAELVKSYL------ 107

Query: 432 RVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
                +  G+ + H      ++HRD++  N+ +D++   K+A+F LA
Sbjct: 108 ---YQILQGILFCHSR---RVLHRDLKPQNLLIDNKGVIKLADFGLA 148

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 45.0 bits (106), Expect = 6e-05
 Identities = 53/237 (22%), Positives = 82/237 (34%), Gaps = 93/237 (39%)

Query: 355 LAVKKIKEDVT--------EELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
           +AVK +KE  T         EL+IL  I NH N+V L+G  +   G   ++ E+ + G+L
Sbjct: 40  VAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNGPLMVIVEFCKYGNL 99

Query: 406 DKWLHPK----------------------------SKSSSSSGSVIF------------- 424
             +L  K                             +  +   SV+F             
Sbjct: 100 SNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNP 159

Query: 425 -----------LTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIA 473
                      LT    +  +  VA G++++   A    +HRD+   NI L      KI 
Sbjct: 160 PQETDDLWKSPLTMEDLICYSFQVARGMEFL---ASRKCIHRDLAARNILLSENNVVKIC 216

Query: 474 NFSLAAPATNDVMPKF---------------------------DVFAFGVVLLELLS 503
           +F LA     D  P +                           DV++FGV+L E+ S
Sbjct: 217 DFGLARDIYKD--PDYVRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFS 271

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 45/167 (26%)

Query: 367 ELRILQRINHANLVKLMGV-SSDSQGNRF----LVYEYAENGSLDKWLHPKSKSSSSSGS 421
           ELR+L+ ++H N++ L+ V +  S    F    LV            L+   K    S  
Sbjct: 64  ELRLLKHMDHENVIGLLDVFTPASSLEDFQDVYLVTHLM-----GADLNNIVKCQKLSDD 118

Query: 422 VI-FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAP 480
            I FL + Q LR       GL+Y+H      I+HRD++ +NI ++   + KI +F LA  
Sbjct: 119 HIQFLVY-QILR-------GLKYIH---SAGIIHRDLKPSNIAVNEDCELKILDFGLARH 167

Query: 481 ATNDVMPKF----------------------DVFAFGVVLLELLSGK 505
            T+D M  +                      D+++ G ++ ELL+GK
Sbjct: 168 -TDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGK 213

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 43/179 (24%)

Query: 355 LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW 408
           +AVK +K      E    E  +++ + H  LVKL  V +      +++ E+   GSL  +
Sbjct: 33  VAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEP--IYIITEFMAKGSLLDF 90

Query: 409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF 468
           L       S  GS   L   + +  +  +A G+ ++    Q + +HRD+R  NI + +  
Sbjct: 91  L------KSDEGSKQPL--PKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASL 139

Query: 469 KAKIANFSLA---------------------AP-ATN--DVMPKFDVFAFGVVLLELLS 503
             KIA+F LA                     AP A N      K DV++FG++L+E+++
Sbjct: 140 VCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVT 198

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 44.6 bits (105), Expect = 8e-05
 Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 22/150 (14%)

Query: 345 VYRA-TIDGKVLAVKKI--------KEDVTEELRILQRINHANLVKLMGVSSDSQGNRFL 395
           VY+A   +  VLA  K+         ED   E+ IL   +H N+VKL+      + N ++
Sbjct: 21  VYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFY-YENNLWI 79

Query: 396 VYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHR 455
           + E+   G++D  +    +          LT  Q   V       L Y+HE+    I+HR
Sbjct: 80  LIEFCAGGAVDAVMLELERP---------LTEPQIRVVCKQTLEALNYLHEN---KIIHR 127

Query: 456 DIRTNNIQLDSRFKAKIANFSLAAPATNDV 485
           D++  NI        K+A+F ++A  T  +
Sbjct: 128 DLKAGNILFTLDGDIKLADFGVSAKNTRTI 157

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 44.2 bits (104), Expect = 9e-05
 Identities = 42/186 (22%), Positives = 85/186 (45%), Gaps = 49/186 (26%)

Query: 352 GKVLAVKKI-------KEDVTEELRILQRINHANLVKLMGVSSDSQGNR-FLVYEYAENG 403
           GK++AVKK+       +E +  E+ I++   H N+V++   +S   G+  ++V E+ E G
Sbjct: 45  GKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMY--NSYLVGDELWVVMEFLEGG 102

Query: 404 SL-DKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNI 462
           +L D   H +            +   Q   V L V   L  +H      ++HRDI++++I
Sbjct: 103 ALTDIVTHTR------------MNEEQIAAVCLAVLKALSVLHAQG---VIHRDIKSDSI 147

Query: 463 QLDSRFKAKIANFSLAAPATNDVM-----------------------PKFDVFAFGVVLL 499
            L    + K+++F   A  + +V                        P+ D+++ G++++
Sbjct: 148 LLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVI 207

Query: 500 ELLSGK 505
           E++ G+
Sbjct: 208 EMVDGE 213

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 41/196 (20%), Positives = 80/196 (40%), Gaps = 38/196 (19%)

Query: 341 IGKSVYRATIDGKVLAVKKIKEDVT--------EELRILQRINHANLVKLMGVSSDSQGN 392
             + + +   + +V AVK + E  +         E  +++     ++V+L+GV S  Q  
Sbjct: 26  NARDIIKGEAETRV-AVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPT 84

Query: 393 RFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSI 452
             +V E   +G L  +L      + ++      T  + +++A ++A+G+ Y++       
Sbjct: 85  -LVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAK---KF 140

Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA----------------------APAT---NDVMP 487
           VHRD+   N  +   F  KI +F +                       AP +        
Sbjct: 141 VHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTT 200

Query: 488 KFDVFAFGVVLLELLS 503
             D+++FGVVL E+ S
Sbjct: 201 SSDMWSFGVVLWEITS 216

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 48/192 (25%)

Query: 352 GKVLAVKKIK------EDVTEELR---ILQRINHANLVKLMGVSSDSQGNRFL-----VY 397
            + +AVK +K       D+ E LR    ++  +H N++KL+GVS  S+    L     + 
Sbjct: 27  FQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLPIPMVIL 86

Query: 398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRL-RVALDVANGLQYMHEHAQPSIVHRD 456
            + ++G L  +L       S  G   F    Q L R  +D+A+G++Y+   +  + +HRD
Sbjct: 87  PFMKHGDLHTFL-----LMSRIGEEPFTLPLQTLVRFMIDIASGMEYL---SSKNFIHRD 138

Query: 457 IRTNNIQLDSRFKAKIANFSLA-------------------------APATNDVMPKFDV 491
           +   N  L+      +A+F L+                         + A N      DV
Sbjct: 139 LAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDV 198

Query: 492 FAFGVVLLELLS 503
           +AFGV + E+++
Sbjct: 199 WAFGVTMWEIMT 210

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 68/223 (30%)

Query: 334 NLSEHYS----IGKSVYR---ATID---GKVLAVKKIK--EDVT------EELRILQRIN 375
           ++   Y     IG+  Y    +      G  +A+KKI   E  T       E++IL+R  
Sbjct: 2   DVGPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFK 61

Query: 376 HANLVKLMGV----SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVI--FLTWSQ 429
           H N++ ++ +    S +S  + ++V E  E       L+   K+   S   I  FL   Q
Sbjct: 62  HENIIGILDIIRPPSFESFNDVYIVQELMETD-----LYKLIKTQHLSNDHIQYFLY--Q 114

Query: 430 RLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND----- 484
            LR       GL+Y+H     +++HRD++ +N+ L++    KI +F LA  A  +     
Sbjct: 115 ILR-------GLKYIH---SANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTG 164

Query: 485 ---------------VMPKF-------DVFAFGVVLLELLSGK 505
                          +M          D+++ G +L E+LS +
Sbjct: 165 FLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNR 207

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 28/183 (15%)

Query: 318 GKPIVYEIEVIMESTMNLSEHYSIGKSVYRAT------IDGKVLAVK------KIKEDVT 365
           GK I+++       T  + E  +IGK  Y          +G   AVK       I E++ 
Sbjct: 5   GKTIIFDSFPDPSDTWEIIE--TIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIE 62

Query: 366 EELRILQRI-NHANLVKLMGV---SSDSQGNR-FLVYEYAENGSLDKWLHPKSKSSSSSG 420
            E  IL+ + +H N+VK  G+        G++ +LV E    GS+   +    K      
Sbjct: 63  AEYNILKALSDHPNVVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERME 122

Query: 421 SVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAP 480
             I    +  L  AL    GLQ++H +     +HRD++ NNI L +    K+ +F ++A 
Sbjct: 123 EPII---AYILHEAL---MGLQHLHVN---KTIHRDVKGNNILLTTEGGVKLVDFGVSAQ 173

Query: 481 ATN 483
            T+
Sbjct: 174 LTS 176

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures. Mutations in human myosin IIIA are responsible for progressive nonsyndromic hearing loss. Human myosin IIIA possesses ATPase and kinase activities, and the ability to move actin filaments in a motility assay. It may function as a cellular transporter capable of moving along actin bundles in sensory cells. Length = 286

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 36/168 (21%)

Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSS 419
           I+  +  EL++L   N   +V   G    S G   +  E+ + GSLD+ L    +     
Sbjct: 46  IRNQIIRELQVLHECNSPYIVGFYGAFY-SDGEISICMEHMDGGSLDQVLKKAGRIPE-- 102

Query: 420 GSVIFLTWSQRL-RVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
                    Q L +V++ V  GL Y+ E  +  I+HRD++ +NI ++SR + K+ +F ++
Sbjct: 103 ---------QILGKVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVS 151

Query: 479 APATNDVMPKF---------------------DVFAFGVVLLELLSGK 505
               + +   F                     D+++ G+ L+E+  G+
Sbjct: 152 GQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGR 199

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase adapter protein

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 27/145 (18%)

Query: 344 SVYRATIDGKVLAVKKI------KEDVTE---ELRILQRINHANLVKLMGVSSDSQGNRF 394
            + +      ++AVKKI      KED+     E+   +++ H N++  +          +
Sbjct: 17  HLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDS-ELY 75

Query: 395 LVYEYAENGSLDKWLHPKSKSSSSSG---SVIFLTWSQRLRVALDVANGLQYMHEHAQPS 451
           +V      GS +  L    K+    G     I       L+   DV N L Y+H      
Sbjct: 76  VVSPLMAYGSCEDLL----KTHFPEGLPELAIAFI----LK---DVLNALDYIH---SKG 121

Query: 452 IVHRDIRTNNIQLDSRFKAKIANFS 476
            +HR ++ ++I L    K  ++   
Sbjct: 122 FIHRSVKASHILLSGDGKVVLSGLR 146

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. The structure of STRAD-alpha is available and shows that this protein binds ATP, has an ordered activation loop, and adopts a closed conformation typical of fully active protein kinases. It does not possess activity due to nonconservative substitutions of essential catalytic residues. ATP binding enhances the affinity of STRAD for MO25. The conformation of STRAD-alpha stabilized through ATP and MO25 may be needed to activate LKB1. Length = 314

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 48/211 (22%), Positives = 90/211 (42%), Gaps = 63/211 (29%)

Query: 341 IGKSVY------RATIDGKVLAVKKIK---EDVTE------ELRILQRINHANLVKL--- 382
           IG+  Y      + +   + +A+KKI    ++  +      E+++L+ ++H N++ +   
Sbjct: 13  IGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDI 72

Query: 383 -MGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSS---SSSGSVIFLTWSQRLRVALDVA 438
                 ++  + ++VYE      +D  LH   +SS   S      FL   Q LR      
Sbjct: 73  MPPPHREAFNDVYIVYEL-----MDTDLHQIIRSSQTLSDDHCQYFLY--QLLR------ 119

Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAP--ATNDVMPKF------- 489
            GL+Y+H     +++HRD++ +N+ L++    KI +F LA       D M ++       
Sbjct: 120 -GLKYIH---SANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGDFMTEYVVTRWYR 175

Query: 490 ---------------DVFAFGVVLLELLSGK 505
                          DV++ G +  ELL  K
Sbjct: 176 APELLLNCSEYTTAIDVWSVGCIFAELLGRK 206

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 23/147 (15%)

Query: 345 VYRA--TIDGKVLAVKKIK----ED---VTEELRILQRINHANLVKLMGVSSDSQGNRFL 395
           VY+A     G++ A+K IK    ED   V +E+ +++   H+N+V   G S   +   ++
Sbjct: 25  VYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFG-SYLRRDKLWI 83

Query: 396 VYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHR 455
             E+   GSL    H              L+ SQ   V+ +   GL Y+H   +   +HR
Sbjct: 84  CMEFCGGGSLQDIYHVTGP----------LSESQIAYVSRETLQGLYYLHSKGK---MHR 130

Query: 456 DIRTNNIQLDSRFKAKIANFSLAAPAT 482
           DI+  NI L      K+A+F ++A  T
Sbjct: 131 DIKGANILLTDNGHVKLADFGVSAQIT 157

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 46/159 (28%), Positives = 63/159 (39%), Gaps = 38/159 (23%)

Query: 378 NLVKLMG--VSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVAL 435
           N+V L    VS DS    FLV ++AE G L  W H     +     V    W+  + VAL
Sbjct: 46  NMVCLHKYIVSEDSV---FLVLQHAEGGKL--WSHISKFLNIPEECV--KRWAAEMVVAL 98

Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFS-----------------LA 478
           D       +H      IV RD+  NNI LD R   ++  FS                   
Sbjct: 99  DA------LHREG---IVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDGEAVENMYC 149

Query: 479 AP---ATNDVMPKFDVFAFGVVLLELLSGKKATRTTENG 514
           AP     ++     D ++ G +L ELL+GK       +G
Sbjct: 150 APEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSG 188

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. RPK118 also binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Length = 237

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 40/175 (22%), Positives = 79/175 (45%), Gaps = 39/175 (22%)

Query: 355 LAVK-KIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS 413
           L +K  I+  +  EL++L   N   +V   G +  S G   +  E+ + GSLD+ L    
Sbjct: 36  LEIKPAIRNQIIRELKVLHECNSPYIVGFYG-AFYSDGEISICMEHMDGGSLDQVL---- 90

Query: 414 KSSSSSGSV--IFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAK 471
                +G +    L      ++++ V  GL Y+ E  +  I+HRD++ +NI ++SR + K
Sbjct: 91  ---KKAGRIPENILG-----KISIAVLRGLTYLRE--KHKIMHRDVKPSNILVNSRGEIK 140

Query: 472 IANFSLAAPATNDVMPKF---------------------DVFAFGVVLLELLSGK 505
           + +F ++    + +   F                     D+++ G+ L+E+  G+
Sbjct: 141 LCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGR 195

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 20/100 (20%), Positives = 48/100 (48%), Gaps = 28/100 (28%)

Query: 432 RVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDV------ 485
           ++A+ +   L+Y+H   + S++HRD++ +N+ ++   + K+ +F ++    + V      
Sbjct: 107 KIAVSIVKALEYLHS--KLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVAKTIDA 164

Query: 486 -----MP---------------KFDVFAFGVVLLELLSGK 505
                M                K DV++ G+ ++EL +G+
Sbjct: 165 GCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGR 204

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 52/167 (31%)

Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLT 426
           E  +LQ +NH +++++            LV      G++   + P   S   +    +LT
Sbjct: 107 EAMLLQNVNHPSVIRMKDT---------LVS-----GAITCMVLPHYSSDLYT----YLT 148

Query: 427 WSQRLRVALDVA--------NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI-----A 473
              R  + +D A         GL+Y+H      I+HRD++T NI ++   +  I     A
Sbjct: 149 KRSR-PLPIDQALIIEKQILEGLRYLHAQ---RIIHRDVKTENIFINDVDQVCIGDLGAA 204

Query: 474 NFSLAAPA---------TN--DVMP------KFDVFAFGVVLLELLS 503
            F + APA         TN  +V+       K D+++ G+VL E+L+
Sbjct: 205 QFPVVAPAFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLA 251

Length = 357

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 62/244 (25%), Positives = 101/244 (41%), Gaps = 51/244 (20%)

Query: 338 HYSIGKSVY--RATIDGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGV 385
           H S G +VY  R   + +V+A+KK+           +D+ +E+R LQ++ H N ++  G 
Sbjct: 25  HGSFG-AVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGC 83

Query: 386 SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMH 445
               +   +LV EY   GS    L    K          L   +   V      GL Y+H
Sbjct: 84  YL-REHTAWLVMEYCL-GSASDLLEVHKKP---------LQEVEIAAVTHGALQGLAYLH 132

Query: 446 EHAQPSIVHRDIRTNNIQLDSRFKAKIANF---SLAAPATNDV-MP-------------- 487
            H   +++HRD++  NI L      K+ +F   S+ APA   V  P              
Sbjct: 133 SH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANXFVGTPYWMAPEVILAMDEG 189

Query: 488 ----KFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKR-EERLRNWMD 542
               K DV++ G+  +E L+ +K      N  +A+      E   ++     E  RN++D
Sbjct: 190 QYDGKVDVWSLGITCIE-LAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVD 248

Query: 543 PNLE 546
             L+
Sbjct: 249 SCLQ 252

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 26/148 (17%)

Query: 345 VYRAT--IDGKVLAVKKI----------KEDVTEELRILQRINHANLVKLMG-VSSDSQG 391
           VYRAT  +DG  +A+KK+          + D  +E+ +L+++NH N++K       D++ 
Sbjct: 18  VYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNEL 77

Query: 392 NRFLVYEYAENGSLDKWL-HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
           N  +V E A+ G L + + H K +        ++  + Q       + + L++MH     
Sbjct: 78  N--IVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQ-------LCSALEHMHSR--- 125

Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            ++HRDI+  N+ + +    K+ +  L 
Sbjct: 126 RVMHRDIKPANVFITATGVVKLGDLGLG 153

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 20/144 (13%)

Query: 344 SVYRATIDGKVLAVKKI---------KEDVTEELRILQRINHANLVKLMGVSSDSQGNRF 394
           S+ R   DGK   +KK+         ++   +E ++L ++ H N+V          G  +
Sbjct: 17  SLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLY 76

Query: 395 LVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
           +V  + E G L   L  +            L  +Q +   + +A  LQY+HE     I+H
Sbjct: 77  IVMGFCEGGDLYHKLKEQKGK--------LLPENQVVEWFVQIAMALQYLHEK---HILH 125

Query: 455 RDIRTNNIQLDSRFKAKIANFSLA 478
           RD++T N+ L      K+ +  +A
Sbjct: 126 RDLKTQNVFLTRTNIIKVGDLGIA 149

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 39/157 (24%), Positives = 66/157 (42%), Gaps = 29/157 (18%)

Query: 341 IGKSVYRATIDG------KVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVS 386
           IGK  +     G      KV+A+K I         ED+ +E+ +L + +   + K  G S
Sbjct: 12  IGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYG-S 70

Query: 387 SDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE 446
                  +++ EY   GS    L P             L  +Q   +  ++  GL Y+H 
Sbjct: 71  YLKDTKLWIIMEYLGGGSALDLLEPGP-----------LDETQIATILREILKGLDYLHS 119

Query: 447 HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN 483
             +   +HRDI+  N+ L    + K+A+F +A   T+
Sbjct: 120 EKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLTD 153

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 36/148 (24%), Positives = 74/148 (50%), Gaps = 26/148 (17%)

Query: 345 VYRAT--IDGKVLAVKKI----------KEDVTEELRILQRINHANLVK-LMGVSSDSQG 391
           VYRAT  +D K +A+KK+          ++D  +E+ +L+++NH N++K L     D++ 
Sbjct: 18  VYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNEL 77

Query: 392 NRFLVYEYAENGSLDKWL-HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
           N  +V E A+ G L + + + K +        ++  + Q       + + +++MH     
Sbjct: 78  N--IVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQ-------LCSAVEHMHSR--- 125

Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            ++HRDI+  N+ + +    K+ +  L 
Sbjct: 126 RVMHRDIKPANVFITATGVVKLGDLGLG 153

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 40/145 (27%), Positives = 74/145 (51%), Gaps = 24/145 (16%)

Query: 344 SVY--RATIDGKVLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNR 393
           +VY  R+ +   ++A+K+I+ +  E        E+ +L+ + HAN+V L  +   ++ + 
Sbjct: 21  TVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIH-TEKSL 79

Query: 394 FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIV 453
            LV+EY +   L ++L     S +     +FL   Q LR       GL Y H      ++
Sbjct: 80  TLVFEYLDK-DLKQYLDDCGNSINMHNVKLFLF--QLLR-------GLNYCHRR---KVL 126

Query: 454 HRDIRTNNIQLDSRFKAKIANFSLA 478
           HRD++  N+ ++ R + K+A+F LA
Sbjct: 127 HRDLKPQNLLINERGELKLADFGLA 151

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 50/190 (26%)

Query: 367 ELRILQRINHANLVKLMGV-SSDSQGNRF----LVYEYAENGSLDKWL-HPKSKSSSSSG 420
           EL +L+ + H N++ L+ V +S   G+ F    LV  Y +   L K + HP S+      
Sbjct: 64  ELTLLKHMQHENVIGLLDVFTSAVSGDEFQDFYLVMPYMQT-DLQKIMGHPLSEDK---- 118

Query: 421 SVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA-- 478
            V +L + Q L        GL+Y+H      I+HRD++  N+ ++   + KI +F LA  
Sbjct: 119 -VQYLVY-QMLC-------GLKYIH---SAGIIHRDLKPGNLAVNEDCELKILDFGLARH 166

Query: 479 --APATNDVMPKF-----------------DVFAFGVVLLELLSGKKATRTTENGKTAVL 519
             A  T  V+ ++                 D+++ G ++ E+L+GK    T   GK  + 
Sbjct: 167 ADAEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGK----TLFKGKDYL- 221

Query: 520 WKEIREVLKV 529
             ++ ++LKV
Sbjct: 222 -DQLTQILKV 230

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 27/153 (17%)

Query: 342 GKSVYRAT--IDGKVLAVKKIKEDVTEE------LR---ILQRINHAN-LVKLMGV---- 385
           GK VY+A     GK++A+KK + ++ EE      LR   +LQ ++ +  +V+L+ V    
Sbjct: 15  GK-VYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVE 73

Query: 386 SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMH 445
             + + + +LV+EY ++  L K++    +          L           +  G+ + H
Sbjct: 74  EKNGKPSLYLVFEYLDS-DLKKFMDSNGRGPGRP-----LPAKTIKSFMYQLLKGVAHCH 127

Query: 446 EHAQPSIVHRDIRTNNIQLD-SRFKAKIANFSL 477
           +H    ++HRD++  N+ +D  +   KIA+  L
Sbjct: 128 KHG---VMHRDLKPQNLLVDKQKGLLKIADLGL 157

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 29/157 (18%)

Query: 341 IGK----SVYRATID--GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVS 386
           IGK     VY+A      +V+A+K I         ED+ +E++ L +     + K  G S
Sbjct: 9   IGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYG-S 67

Query: 387 SDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE 446
                  +++ EY   GS    L P  K   +  + I       LR   +V  GL+Y+HE
Sbjct: 68  FLKGSKLWIIMEYCGGGSCLDLLKP-GKLDETYIAFI-------LR---EVLLGLEYLHE 116

Query: 447 HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN 483
             +   +HRDI+  NI L      K+A+F ++   T+
Sbjct: 117 EGK---IHRDIKAANILLSEEGDVKLADFGVSGQLTS 150

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 23/124 (18%)

Query: 345 VYRATIDGKVLAVKKI-----KEDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYE 398
           VY      +   +K         D   E+ ILQ +      V  +  S +S G  +L+ E
Sbjct: 14  VYLLGTKDEDYVLKINPSREKGADREREVAILQLLARKGLPVPKVLASGESDGWSYLLME 73

Query: 399 YAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIR 458
           + E  +LD+                 ++  ++  +A  +A  L  +H+     + H D+ 
Sbjct: 74  WIEGETLDE-----------------VSEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLH 116

Query: 459 TNNI 462
             NI
Sbjct: 117 PGNI 120

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. Length = 155

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 34/157 (21%)

Query: 341 IGK----SVYRA--TIDGKVLAVKKIK--------EDVTEELRILQRINHA---NLVKLM 383
           IG+    +VYR      G+V+A+K I          D+  E+ +L ++  +   N+ K  
Sbjct: 9   IGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYY 68

Query: 384 GVSSDSQGNR-FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQ 442
           G  S  +G R +++ EYAE GS+   +      +    SVI       +R  L VA  L+
Sbjct: 69  G--SYLKGPRLWIIMEYAEGGSVRTLMKA-GPIAEKYISVI-------IREVL-VA--LK 115

Query: 443 YMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
           Y+H   +  ++HRDI+  NI + +    K+ +F +AA
Sbjct: 116 YIH---KVGVIHRDIKAANILVTNTGNVKLCDFGVAA 149

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 49/201 (24%)

Query: 340 SIGKSVYRATIDG--KVLAVKKIKEDVT----------EELRILQRINHANLVKLMGVSS 387
           S GK V+ A + G  +  A+K +K+DV            E R+L        +  +  + 
Sbjct: 7   SFGK-VFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTF 65

Query: 388 DSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH 447
            ++ N F V EY   G L    H +S          F         A ++  GLQ++H  
Sbjct: 66  QTKENLFFVMEYLNGGDL--MFHIQSCHKFDLPRATFY--------AAEIICGLQFLHSK 115

Query: 448 AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAP------------ATND-VMPKF----- 489
               IV+RD++ +NI LD+    KIA+F +                T D + P+      
Sbjct: 116 G---IVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQK 172

Query: 490 -----DVFAFGVVLLELLSGK 505
                D ++FGV+L E+L G+
Sbjct: 173 YNTSVDWWSFGVLLYEMLIGQ 193

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 16/126 (12%)

Query: 354 VLAVKKIKEDVTEELRILQRINHANLVKLMGVS-SDSQGNRFLVYEYAENGSLDKWLHPK 412
           VLA +K  E + EE+ +L+ + H N+V+ +G    D+  + F+  E+   GS+       
Sbjct: 39  VLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFM--EFVPGGSI------- 89

Query: 413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI 472
           S   +  G +    + +  +  LD   G+ Y+H +    +VHRDI+ NN+ L      K+
Sbjct: 90  SSILNRFGPLPEPVFCKYTKQILD---GVAYLHNN---CVVHRDIKGNNVMLMPNGIIKL 143

Query: 473 ANFSLA 478
            +F  A
Sbjct: 144 IDFGCA 149

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 48/217 (22%), Positives = 89/217 (41%), Gaps = 66/217 (30%)

Query: 341 IGKSVYRATI------DGKVLAVKKIK-----------------EDVTEELRILQRINHA 377
           IGK  Y           G+++AVK+++                 + +  E+  L+ ++H 
Sbjct: 9   IGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHL 68

Query: 378 NLVKLMGV-SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALD 436
           N+V+ +G  +++   + FL  EY   GS+   L    +       V F T  Q L     
Sbjct: 69  NIVQYLGFETTEEYLSIFL--EYVPGGSIGSCLRTYGRFEEQL--VRFFT-EQVLE---- 119

Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------------ 478
              GL Y+H      I+HRD++ +N+ +D+    KI++F ++                  
Sbjct: 120 ---GLAYLHSK---GILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGS 173

Query: 479 ----APATNDVM-----PKFDVFAFGVVLLELLSGKK 506
               AP            K D+++ G V+LE+ +G++
Sbjct: 174 VFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRR 210

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 41.7 bits (98), Expect = 8e-04
 Identities = 48/187 (25%), Positives = 71/187 (37%), Gaps = 47/187 (25%)

Query: 352 GKVLAVKKIKEDVT----------EELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAE 401
           GK  A+K +K++V            E R+LQ   H  L  L   S  +      V EYA 
Sbjct: 20  GKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALK-YSFQTHDRLCFVMEYAN 78

Query: 402 NGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNN 461
            G L  + H        S   +F     R   A ++ + L Y+H      +V+RD++  N
Sbjct: 79  GGEL--FFH-------LSRERVFSEDRARFYGA-EIVSALGYLHSC---DVVYRDLKLEN 125

Query: 462 IQLDSRFKAKIANFSLA--------------------APAT---NDVMPKFDVFAFGVVL 498
           + LD     KI +F L                     AP     ND     D +  GVV+
Sbjct: 126 LMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVM 185

Query: 499 LELLSGK 505
            E++ G+
Sbjct: 186 YEMMCGR 192

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 41.5 bits (97), Expect = 8e-04
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 26/100 (26%)

Query: 429 QRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------- 478
           Q +  A +++ GL ++H      I++RD++ +N+ LDS    KIA+F +           
Sbjct: 102 QAVFYAAEISVGLFFLHRRG---IIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVTT 158

Query: 479 ----------APATNDVMP---KFDVFAFGVVLLELLSGK 505
                     AP      P     D +A+GV+L E+L+G+
Sbjct: 159 RTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQ 198

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 51/202 (25%)

Query: 340 SIGKSVYRATIDGK--VLAVKKIKEDVT----------EELRILQ-RINHANLVKLMGVS 386
           S GK V  A + G   V A+K +K+DV            E RIL     H  L  L    
Sbjct: 7   SFGK-VMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHC-C 64

Query: 387 SDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE 446
             ++   F V EY   G L   +  +S+      S  +         A +V   L ++H 
Sbjct: 65  FQTKDRLFFVMEYVNGGDLMFQIQ-RSRKFDEPRSRFY---------AAEVTLALMFLHR 114

Query: 447 HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM-------------------- 486
           H    +++RD++ +NI LD+    K+A+F +      + +                    
Sbjct: 115 HG---VIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQEL 171

Query: 487 ---PKFDVFAFGVVLLELLSGK 505
              P  D +A GV++ E+++G+
Sbjct: 172 EYGPSVDWWALGVLMYEMMAGQ 193

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional

 Score = 41.6 bits (97), Expect = 0.001
 Identities = 40/193 (20%), Positives = 74/193 (38%), Gaps = 48/193 (24%)

Query: 342 GKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGV--SSD-----SQGNRF 394
           GK      I  +V A  +    +  E+  L R+NH N++K+  +  S       +Q   F
Sbjct: 188 GKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENILKIEEILRSEANTYMITQKYDF 247

Query: 395 LVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
            +Y +  + + D W     K          L    R  +   +   ++Y+H+     ++H
Sbjct: 248 DLYSFMYDEAFD-W-----KDRP-------LLKQTR-AIMKQLLCAVEYIHDKK---LIH 290

Query: 455 RDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPK------------------------FD 490
           RDI+  NI L+   K  + +F  A P   +                             D
Sbjct: 291 RDIKLENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITD 350

Query: 491 VFAFGVVLLELLS 503
           +++ G++LL++LS
Sbjct: 351 IWSCGLILLDMLS 363

Length = 501

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 31/164 (18%)

Query: 329 MESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE--------ELRILQRI 374
           ME+ + L +   +G+  Y     G+      ++A+K+I+ +  E        E+ +L+ +
Sbjct: 5   METYIKLEK---LGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDL 61

Query: 375 NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVA 434
            HAN+V L  +    + +  LV+EY +   L +++       S     IFL   Q LR  
Sbjct: 62  KHANIVTLHDIVHTDK-SLTLVFEYLDK-DLKQYMDDCGNIMSMHNVKIFLY--QILR-- 115

Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
                GL Y H      ++HRD++  N+ ++ R + K+A+F LA
Sbjct: 116 -----GLAYCHRR---KVLHRDLKPQNLLINERGELKLADFGLA 151

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 51/201 (25%), Positives = 81/201 (40%), Gaps = 51/201 (25%)

Query: 340 SIGKSVY-RATIDGKVLAVKKIKEDV----------TEELRILQRI-NHANLVKLMGVSS 387
           S GK +  R    G++ AVK +K+DV            E RIL    NH  L +L     
Sbjct: 7   SFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLY-CCF 65

Query: 388 DSQGNRFLVYEYAENGSLDKWLH-PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE 446
            +    F V E+   G L    H  KS+    + +  +         A ++ + L ++H+
Sbjct: 66  QTPDRLFFVMEFVNGGDL--MFHIQKSRRFDEARARFY---------AAEITSALMFLHD 114

Query: 447 HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA--------------------APATNDVM 486
                I++RD++ +N+ LD     K+A+F +                     AP     M
Sbjct: 115 KG---IIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEM 171

Query: 487 ---PKFDVFAFGVVLLELLSG 504
              P  D +A GV+L E+L G
Sbjct: 172 LYGPSVDWWAMGVLLYEMLCG 192

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 35/167 (20%)

Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGS 421
           ED  +E  +L ++ H N+V     S ++ G+ ++V EY + G L + +  K +       
Sbjct: 43  EDSRKEAVLLAKMKHPNIVAFKE-SFEADGHLYIVMEYCDGGDLMQKI--KLQRGKLFPE 99

Query: 422 VIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA 481
              L W  ++ +      G+Q++HE     ++HRDI++ NI L    K K+ +F  A   
Sbjct: 100 DTILQWFVQMCL------GVQHIHEK---RVLHRDIKSKNIFLTQNGKVKLGDFGSARLL 150

Query: 482 TNDV--------------------MP---KFDVFAFGVVLLELLSGK 505
           T+                      MP   K D+++ G +L EL + K
Sbjct: 151 TSPGAYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLK 197

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 26/95 (27%)

Query: 434 ALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA--------------- 478
           A ++A GL ++H      I++RD++ +N+ LDS    KIA+F +                
Sbjct: 107 AAEIAIGLFFLHSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVTTKTFCG 163

Query: 479 -----APATNDVMP---KFDVFAFGVVLLELLSGK 505
                AP      P     D +AFGV+L E+L+G+
Sbjct: 164 TPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQ 198

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|226376 COG3858, COG3858, Predicted glycosyl hydrolase [General function prediction only]

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 17/112 (15%)

Query: 44  YVAYFAQSPEFLDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPIICGCTGNQY 103
              +     +      I+  F  +   I   ++  ++D  LV  Q  +VP          
Sbjct: 1   MSIHLVGPGDSR--LIIAVYFPYTNNRIVNGNDYTNDD--LVDGQTFVVPP--------- 47

Query: 104 FANITYQIKKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFP 155
            +   Y +  GD+   ++ T      +      MN  I P  LQ G+ +  P
Sbjct: 48  -SGHFYDVGPGDTLTSIARTVGVTQDSA---AIMNFVICPGYLQYGLNLYIP 95

Length = 423

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 28/143 (19%)

Query: 347 RATIDGKVLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNRFLVYE 398
           ++ ++GK++A+K I+    E        E  +L+ + HAN+V L  +    +    LV+E
Sbjct: 25  KSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKE-TLTLVFE 83

Query: 399 YAENG---SLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHR 455
           Y        +DK  HP      +    +F    Q LR       GL Y+H   Q  I+HR
Sbjct: 84  YVHTDLCQYMDK--HPGGLHPENVKLFLF----QLLR-------GLSYIH---QRYILHR 127

Query: 456 DIRTNNIQLDSRFKAKIANFSLA 478
           D++  N+ +    + K+A+F LA
Sbjct: 128 DLKPQNLLISDTGELKLADFGLA 150

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 14/120 (11%)

Query: 362 EDVTEELRIL-QRINHANLVKLMGVSSDSQGNR-FLVYEYAENGSL-DKWLHPKSKSSSS 418
            D+  E+ I+ +++ H N+V+     +  + +R ++V +  E   L + +   K K    
Sbjct: 53  GDIVSEVTIIKEQLRHPNIVRYY--KTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRF 110

Query: 419 SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
           +   I   W+  +++ L     L+Y+H+  +  IVHRD+  NNI L    K  I +F LA
Sbjct: 111 TEERI---WNIFVQMVL----ALRYLHKEKR--IVHRDLTPNNIMLGEDDKVTITDFGLA 161

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 47/196 (23%), Positives = 78/196 (39%), Gaps = 39/196 (19%)

Query: 354 VLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS 413
           ++A  ++   +TE  R+LQ   H  L  L   S  +      V EYA  G L  + H   
Sbjct: 33  IVAKDEVAHTLTEN-RVLQNSRHPFLTALK-YSFQTHDRLCFVMEYANGGEL--FFHLSR 88

Query: 414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIA 473
           +   S     F           ++ + L Y+H  ++ ++V+RD++  N+ LD     KI 
Sbjct: 89  ERVFSEDRARFY--------GAEIVSALDYLH--SEKNVVYRDLKLENLMLDKDGHIKIT 138

Query: 474 NFSLA--------------------APAT---NDVMPKFDVFAFGVVLLELLSGKKATRT 510
           +F L                     AP     ND     D +  GVV+ E++ G+     
Sbjct: 139 DFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN 198

Query: 511 TENGK--TAVLWKEIR 524
            ++ K    +L +EIR
Sbjct: 199 QDHEKLFELILMEEIR 214

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 26/136 (19%)

Query: 352 GKVLAVKKIKED------------VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEY 399
           G+ LAVK++  D            +  E+++L+ + H  +V+  G   D +    +  EY
Sbjct: 27  GRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDE-TLSIFMEY 85

Query: 400 AENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
              GS+   L        + G+   LT +   +    +  G++Y+H +    IVHRDI+ 
Sbjct: 86  MPGGSVKDQL-------KAYGA---LTETVTRKYTRQILEGVEYLHSN---MIVHRDIKG 132

Query: 460 NNIQLDSRFKAKIANF 475
            NI  DS    K+ +F
Sbjct: 133 ANILRDSAGNVKLGDF 148

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 26/95 (27%)

Query: 434 ALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA--------------- 478
           A ++A GL ++H      I++RD++ +N+ LD+    KIA+F +                
Sbjct: 107 AAEIAIGLFFLHSKG---IIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTTRTFCG 163

Query: 479 -----APATNDVMP---KFDVFAFGVVLLELLSGK 505
                AP      P     D +AFGV+L E+L+G+
Sbjct: 164 TPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQ 198

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 26/137 (18%)

Query: 352 GKVLAVKKIKEDVTE------------ELRILQRINHANLVKLMGVSSDSQGNRFLVY-E 398
           G+ LAVK+++ D               E+++L+ + H  +V+  G   D       ++ E
Sbjct: 27  GRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTLSIFME 86

Query: 399 YAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIR 458
           +   GS+   L        S G+   LT +   +    +  G+ Y+H +    IVHRDI+
Sbjct: 87  HMPGGSIKDQL-------KSYGA---LTENVTRKYTRQILEGVSYLHSNM---IVHRDIK 133

Query: 459 TNNIQLDSRFKAKIANF 475
             NI  DS    K+ +F
Sbjct: 134 GANILRDSVGNVKLGDF 150

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 13/118 (11%)

Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGS 421
           ED   E+ IL   NH  +VKL+G      G  +++ E+   G++D  +    +       
Sbjct: 54  EDYMVEIEILATCNHPYIVKLLGAFY-WDGKLWIMIEFCPGGAVDAIMLELDRG------ 106

Query: 422 VIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
              LT  Q   +   +   LQY+H      I+HRD++  N+ L      K+A+F ++A
Sbjct: 107 ---LTEPQIQVICRQMLEALQYLHSM---KIIHRDLKAGNVLLTLDGDIKLADFGVSA 158

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 38/175 (21%)

Query: 354 VLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS 413
           ++A  ++   VTE  R+LQ   H  L  L   +  +      V EYA  G L  + H   
Sbjct: 33  IIAKDEVAHTVTES-RVLQNTRHPFLTALK-YAFQTHDRLCFVMEYANGGEL--FFH--- 85

Query: 414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIA 473
                S   +F     R   A ++ + L+Y+H      +V+RDI+  N+ LD     KI 
Sbjct: 86  ----LSRERVFTEERARFYGA-EIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKIT 137

Query: 474 NFSLA--------------------APAT---NDVMPKFDVFAFGVVLLELLSGK 505
           +F L                     AP     ND     D +  GVV+ E++ G+
Sbjct: 138 DFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 192

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 26/146 (17%)

Query: 344 SVYRA--TIDGKVLAVKKIKEDVTE--------ELRILQRINHANLVKLMG-VSSDSQGN 392
           +VY+    + G+++A+K+I+ +  E        E  +L+ + HAN+V L   + +     
Sbjct: 20  TVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLT 79

Query: 393 RFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSI 452
             LV+EY +   L +++       S     +FL   Q LR       GL Y H   Q  +
Sbjct: 80  --LVFEYLDT-DLKQYMDDCGGGLSMHNVRLFLF--QLLR-------GLAYCH---QRRV 124

Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA 478
           +HRD++  N+ +  R + K+A+F LA
Sbjct: 125 LHRDLKPQNLLISERGELKLADFGLA 150

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 39.6 bits (92), Expect = 0.003
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 26/137 (18%)

Query: 352 GKVLAVKKI------KEDVTE------ELRILQRINHANLVKLMGVSSDSQGNRFLVY-E 398
           G+ LAVK++      +E   E      E+++L+ + H  +V+  G   D +  +  ++ E
Sbjct: 27  GRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKLSIFVE 86

Query: 399 YAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIR 458
           Y   GS+   L        + G+   LT +   R    +  G+ Y+H +    IVHRDI+
Sbjct: 87  YMPGGSIKDQL-------KAYGA---LTENVTRRYTRQILQGVSYLHSNM---IVHRDIK 133

Query: 459 TNNIQLDSRFKAKIANF 475
             NI  DS    K+ +F
Sbjct: 134 GANILRDSAGNVKLGDF 150

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|212030 cd00118, LysM, Lysine Motif is a small domain involved in binding peptidoglycan

 Score = 35.5 bits (83), Expect = 0.003
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 107 ITYQIKKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVT 153
            TY +K GD+ +  SI + +       +   NP INP+ +  G K+ 
Sbjct: 1   KTYTVKPGDTLW--SI-AKKYGVTVEELAAANPLINPDCIYPGQKLK 44

LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes. Length = 45

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 45/189 (23%)

Query: 347 RATIDGKVLAVKKIKEDVT---------EELRILQRINHANLVKLMGVSSDSQGNRFLVY 397
           R  + G+ +A+KKI +  +          EL++L+ + H N++ L  +      + + V 
Sbjct: 30  RDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLEDIYFVT 89

Query: 398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
           E      L   LH    S       I     Q LR       GL+Y+H      +VHRD+
Sbjct: 90  EL-----LGTDLHRLLTSRPLEKQFIQYFLYQILR-------GLKYVH---SAGVVHRDL 134

Query: 458 RTNNIQLDSRFKAKIANFSLAAPATN--------------DVM-------PKFDVFAFGV 496
           + +NI ++     KI +F LA                   ++M        + D+++ G 
Sbjct: 135 KPSNILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGC 194

Query: 497 VLLELLSGK 505
           +  E+L GK
Sbjct: 195 IFAEMLEGK 203

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 39.5 bits (93), Expect = 0.003
 Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 34/143 (23%)

Query: 351 DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYA 400
             +  A+K +K          E +  E  IL+  NH  +VKL     D +    L+ EY 
Sbjct: 17  KNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLM-EYC 75

Query: 401 ENGSL-----DKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHR 455
             G L     D+ L  +  +      V+                  +Y+H      I++R
Sbjct: 76  LGGELWTILRDRGLFDEYTARFYIACVV---------------LAFEYLHNR---GIIYR 117

Query: 456 DIRTNNIQLDSRFKAKIANFSLA 478
           D++  N+ LDS    K+ +F  A
Sbjct: 118 DLKPENLLLDSNGYVKLVDFGFA 140

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173643 cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 13/99 (13%)

Query: 366 EELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFL 425
           E   ++++++H ++V L GV      N  +V E+ E G LD ++H KS           L
Sbjct: 53  ETASMMRQVSHKHIVLLYGVCVRDVEN-IMVEEFVEFGPLDLFMHRKSD---------VL 102

Query: 426 TWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL 464
           T   + +VA  +A+ L Y+ +     +VH ++ T NI L
Sbjct: 103 TTPWKFKVAKQLASALSYLEDK---DLVHGNVCTKNILL 138

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 262

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 45/167 (26%)

Query: 367 ELRILQRINHANLVKLMGV-SSDSQGNRF----LVYEY--AENGSLDKWLHPKSKSSSSS 419
           ELR+L+ + H N++ L+ V + D   +RF    LV  +   + G L K  H K     S 
Sbjct: 64  ELRLLKHMKHENVIGLLDVFTPDLSLDRFHDFYLVMPFMGTDLGKLMK--HEKL----SE 117

Query: 420 GSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
             + FL + Q L+       GL+Y+H      I+HRD++  N+ ++   + KI +F LA 
Sbjct: 118 DRIQFLVY-QMLK-------GLKYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLAR 166

Query: 480 PA----TNDVMPKF-----------------DVFAFGVVLLELLSGK 505
                 T  V+ ++                 D+++ G ++ E+L+GK
Sbjct: 167 QTDSEMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGK 213

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 51/202 (25%), Positives = 83/202 (41%), Gaps = 51/202 (25%)

Query: 340 SIGKSVYRATIDGK--VLAVKKIKEDV------TEELRILQRI-----NHANLVKLMGVS 386
           S GK V  A + G     A+K +K+DV       E   + +R+      H  L  L   +
Sbjct: 7   SFGK-VMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLF-CT 64

Query: 387 SDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE 446
             ++ + F V EY   G L    H +S          F         A ++  GLQ++H+
Sbjct: 65  FQTKEHLFFVMEYLNGGDL--MFHIQSSGRFDEARARFY--------AAEIICGLQFLHK 114

Query: 447 HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAP------------ATNDVM-PKF---- 489
                I++RD++ +N+ LD     KIA+F +                T D + P+     
Sbjct: 115 K---GIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQ 171

Query: 490 ------DVFAFGVVLLELLSGK 505
                 D ++FGV+L E+L G+
Sbjct: 172 KYNESVDWWSFGVLLYEMLIGQ 193

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 39.3 bits (91), Expect = 0.004
 Identities = 38/185 (20%), Positives = 80/185 (43%), Gaps = 47/185 (25%)

Query: 352 GKVLAVKKI-------KEDVTEELRILQRINHANLVKLMGVSSDSQGNR-FLVYEYAENG 403
           G+ +A+K+I       KE +  E+ +++ + + N+V  +   S   G+  F+V EY   G
Sbjct: 44  GQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFL--DSFLVGDELFVVMEYLAGG 101

Query: 404 SLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
           SL           +   +   +  +Q   V  +    L+++H +    ++HRDI+++N+ 
Sbjct: 102 SL-----------TDVVTETCMDEAQIAAVCRECLQALEFLHAN---QVIHRDIKSDNVL 147

Query: 464 LDSRFKAKIANFSLAAPATNDVM-----------------------PKFDVFAFGVVLLE 500
           L      K+ +F   A  T +                         PK D+++ G++ +E
Sbjct: 148 LGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIE 207

Query: 501 LLSGK 505
           ++ G+
Sbjct: 208 MVEGE 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 39.3 bits (91), Expect = 0.004
 Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 23/145 (15%)

Query: 347 RATIDGKVLAVKKIKEDVTEELRILQRIN-------HANLVKLMG--VSSDSQG---NRF 394
           R    G++ A+K +     EE  I Q IN       H N+    G  +  +  G     +
Sbjct: 26  RHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLW 85

Query: 395 LVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
           LV E+   GS+   +       ++ G+ +   W     +  ++  GL ++H+H    ++H
Sbjct: 86  LVMEFCGAGSVTDLI------KNTKGNTLKEEWIAY--ICREILRGLSHLHQH---KVIH 134

Query: 455 RDIRTNNIQLDSRFKAKIANFSLAA 479
           RDI+  N+ L    + K+ +F ++A
Sbjct: 135 RDIKGQNVLLTENAEVKLVDFGVSA 159

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 50/223 (22%)

Query: 347 RATIDGKVLAVKK-----IKEDVTE-----ELRILQRINHANLVKLMGVSSDSQGNRFLV 396
           RAT  GK+ A KK     IK+   E     E +IL+++N   +V L   + +++    LV
Sbjct: 22  RAT--GKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSL-AYAYETKDALCLV 78

Query: 397 YEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
                 G L   ++            +F         A ++  GL+ +H      IV+RD
Sbjct: 79  LTLMNGGDLKFHIYNMGNPGFDEERAVFY--------AAEITCGLEDLHRE---RIVYRD 127

Query: 457 IRTNNIQLDSRFKAKIANFSLAAPATND------------VMPKF----------DVFAF 494
           ++  NI LD     +I++  LA                  + P+           D +  
Sbjct: 128 LKPENILLDDYGHIRISDLGLAVEIPEGETIRGRVGTVGYMAPEVVKNERYTFSPDWWGL 187

Query: 495 GVVLLELLSGKKATRTTENGKTAVLWKEI-REVLKVEEKREER 536
           G ++ E++ GK   R     K  V  +E+ R V + +E+  E+
Sbjct: 188 GCLIYEMIEGKSPFRQR---KEKVKREEVERRVKEDQEEYSEK 227

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 18/147 (12%)

Query: 335 LSEHYSIGKSVYRATI-DGKVLAVKKIKEDVT---EELRILQRINHANLVKLMGVSSDSQ 390
           LSE Y+    V R  + + K  A  K + +     +  RILQ   H N+++ +G   ++ 
Sbjct: 13  LSEIYT-DTGVARVVVKELKANASSKEQNEFLQQGDPYRILQ---HPNILQCLGQCVEAI 68

Query: 391 GNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
               LV+EY E G L  +L  +     +S  +         R+A ++A G+ +MH+H   
Sbjct: 69  -PYLLVFEYCELGDLKSYLSQEQWHRRNSQLL------LLQRMACEIAAGVTHMHKH--- 118

Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSL 477
           + +H D+   N  L S    K+ ++ +
Sbjct: 119 NFLHSDLALRNCFLTSDLTVKVGDYGI 145

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage spermatogenesis. Although it is classified as a tyr kinase based on sequence similarity and the phylogenetic tree, Aatyk2 has been characterized as a serine/threonine kinase. Length = 268

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	615
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG3653	534	consensus Transforming growth factor beta/activin	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.98
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.98
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.98
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.98
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.98
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.98
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.98
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.98
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.98
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.98
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.98
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.98
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.98
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.98
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.98
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.97
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.97
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.97
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.97
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.97
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.97
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.97
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.97
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.97
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.97
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.97
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.97
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.97
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.97
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.97
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.97
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.97
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.97
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.97
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.97
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.97
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.97
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.97
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.97
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.97
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.97
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.97
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.97
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.97
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.97
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.97
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.97
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.97
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.97
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.97
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.97
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.97
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.97
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.97
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.97
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.97
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.97
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.97
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.97
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.97
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.97
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.97
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.97
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.97
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.97
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.97
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.97
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.97
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.97
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.97
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.97
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.97
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.97
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.97
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.97
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.97
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.97
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.97
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.97
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.97
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.97
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.97
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.97
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.97
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.97
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.97
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.97
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.97
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.97
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.97
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.97
PTZ00267	478	NIMA-related protein kinase; Provisional	99.97
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.97
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.97
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.97
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.97
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.97
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.97
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.97
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.97
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.97
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.97
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.97
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.97
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.97
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.97
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.97
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.97
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.97
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.97
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.97
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.97
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.97
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.97
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.97
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.97
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.97
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.97
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.97
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.97
PHA03212	391	serine/threonine kinase US3; Provisional	99.97
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.97
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.97
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.97
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.97
PTZ00283	496	serine/threonine protein kinase; Provisional	99.97
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.97
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.97
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.97
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.97
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.97
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.97
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.97
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.97
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.97
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.97
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.97
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.97
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.97
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.97
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.97
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.97
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.97
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.97
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.97
PTZ00036	440	glycogen synthase kinase; Provisional	99.97
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.97
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.97
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.97
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.97
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.97
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.97
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.97
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.97
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.97
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.97
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.97
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.97
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.97
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.97
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.97
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.97
PHA03209	357	serine/threonine kinase US3; Provisional	99.97
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.97
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.97
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.97
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.96
PHA03211	461	serine/threonine kinase US3; Provisional	99.96
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.96
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.96
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.96
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.96
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.96
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.96
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.96
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.96
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.96
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.96
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.96
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.96
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.96
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.96
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.96
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.96
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.96
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.96
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.96
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.96
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.96
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.96
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.96
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.96
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.96
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.96
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.96
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.96
PTZ00284	467	protein kinase; Provisional	99.96
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.96
PHA03207	392	serine/threonine kinase US3; Provisional	99.96
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.96
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.96
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.96
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.96
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.96
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.96
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.96
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.96
KOG0584	632	consensus Serine/threonine protein kinase [General	99.96
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.96
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.96
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.96
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.96
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.96
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.96
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.96
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.96
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.96
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.96
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.96
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.96
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.96
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.96
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.96
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.96
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.96
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.96
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.96
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.96
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.96
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.96
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.96
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.96
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.96
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.96
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.96
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.96
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.96
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.96
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.96
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.96
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.96
KOG0605	550	consensus NDR and related serine/threonine kinases	99.96
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.96
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.96
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.96
KOG0589	426	consensus Serine/threonine protein kinase [General	99.96
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.96
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.96
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.96
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.96
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.96
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.96
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.96
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.96
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.96
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.96
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.96
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.96
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.96
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.96
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.96
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.96
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.96
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.96
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.96
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.96
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.96
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.96
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.96
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.96
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.96
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.96
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.96
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.95
PLN00009	294	cyclin-dependent kinase A; Provisional	99.95
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.95
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.95
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.95
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.95
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.95
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.95
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.95
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.95
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.95
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.95
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.95
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.95
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.95
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.95
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.95
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.95
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.95
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.95
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.95
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.95
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.95
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.95
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.95
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.95
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.95
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.95
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.95
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.95
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.95
KOG0610	459	consensus Putative serine/threonine protein kinase	99.95
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.95
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.95
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.95
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.95
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.94
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.94
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.94
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.94
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.94
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.94
PHA02882	294	putative serine/threonine kinase; Provisional	99.94
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.94
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.94
KOG0586	596	consensus Serine/threonine protein kinase [General	99.94
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.94
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.94
PHA03210	501	serine/threonine kinase US3; Provisional	99.94
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.94
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.94
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.94
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.93
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.93
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.93
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.93
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.93
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.93
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.92
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.92
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.92
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.92
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.92
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.91
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.91
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.91
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.91
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.9
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.9
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.89
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.89
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.89
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.89
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.88
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.88
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.88
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.88
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.87
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.87
PLN00181	793	protein SPA1-RELATED; Provisional	99.86
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.85
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.84
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.84
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.84
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.83
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.83
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.83
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.82
KOG1152	772	consensus Signal transduction serine/threonine kin	99.81
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.79
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.78
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.77
PRK09188	365	serine/threonine protein kinase; Provisional	99.7
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.68
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.67
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.65
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.61
PRK10345	210	hypothetical protein; Provisional	99.59
PRK14879	211	serine/threonine protein kinase; Provisional	99.59
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.57
PRK12274	218	serine/threonine protein kinase; Provisional	99.57
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.56
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.54
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.54
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.54
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.51
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.48
smart00090	237	RIO RIO-like kinase.	99.47
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.45
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.43
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.37
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.36
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.32
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.32
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.25
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.25
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.23
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.19
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.1
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.0
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.95
KOG0606	1205	consensus Microtubule-associated serine/threonine	98.93
PRK10783	456	mltD membrane-bound lytic murein transglycosylase	98.87
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.82
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.8
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.78
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.77
PRK06347	592	autolysin; Reviewed	98.76
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.75
KOG3087	229	consensus Serine/threonine protein kinase [General	98.73
KOG1243	690	consensus Protein kinase [General function predict	98.69
PRK06347	592	autolysin; Reviewed	98.69
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.68
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.59
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.54
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.52
PRK10783	456	mltD membrane-bound lytic murein transglycosylase	98.33
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.24
PRK09902	216	hypothetical protein; Provisional	98.2
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	98.02
COG0661	517	AarF Predicted unusual protein kinase [General fun	97.97
KOG0606	1205	consensus Microtubule-associated serine/threonine	97.86
COG0478	304	RIO-like serine/threonine protein kinase fused to	97.85
KOG2137	700	consensus Protein kinase [Signal transduction mech	97.75
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	97.6
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	97.56
KOG1235	538	consensus Predicted unusual protein kinase [Genera	97.53
PF01476	44	LysM: LysM domain; InterPro: IPR018392 This domain	97.33
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	97.22
PF01476	44	LysM: LysM domain; InterPro: IPR018392 This domain	97.14
PF01636	239	APH: Phosphotransferase enzyme family This family	96.99
PLN02876	822	acyl-CoA dehydrogenase	96.96
COG4248	637	Uncharacterized protein with protein kinase and he	96.94
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	96.81
PRK10593	297	hypothetical protein; Provisional	96.71
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	96.45
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	96.42
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	96.39
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	96.38
KOG1093	725	consensus Predicted protein kinase (contains TBC a	96.27
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	96.18
PRK13914	481	invasion associated secreted endopeptidase; Provis	95.98
TIGR02899	44	spore_safA spore coat assembly protein SafA. in wh	95.98
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	95.79
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	95.73
PRK14125	103	cell division suppressor protein YneA; Provisional	95.72
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	95.58
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	95.41
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	95.39
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	95.35
cd00118	46	LysM Lysin domain, found in a variety of enzymes i	95.28
COG1388	124	LytE FOG: LysM repeat [Cell envelope biogenesis, o	95.17
PRK09550	401	mtnK methylthioribose kinase; Reviewed	94.98
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	94.93
PRK14125	103	cell division suppressor protein YneA; Provisional	94.58
PRK11198	147	LysM domain/BON superfamily protein; Provisional	94.37
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	94.3
PRK05231	319	homoserine kinase; Provisional	94.09
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	93.87
cd00118	46	LysM Lysin domain, found in a variety of enzymes i	93.79
KOG2270	520	consensus Serine/threonine protein kinase involved	93.39
KOG0576	829	consensus Mitogen-activated protein kinase kinase	93.12
PRK10871	319	nlpD lipoprotein NlpD; Provisional	93.03
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	92.92
PLN02236	344	choline kinase	92.85

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-51  Score=430.69  Aligned_cols=257  Identities=39%  Similarity=0.647  Sum_probs=219.8

Q ss_pred             CceeeeHHHHHHHccccccccccc----ceEEEEEE-CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEE
Q 047629          319 KPIVYEIEVIMESTMNLSEHYSIG----KSVYRATI-DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVS  386 (615)
Q Consensus       319 ~~~~~~~~~l~~at~~~~~~~~iG----~~Vy~~~~-~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~  386 (615)
                      ....|+|+++.+||++|++.+.+|    |.||+|.+ +|+.||||++.       .+|.+|++++.+++|||+|+|+|||
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC  140 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYC  140 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEE
Confidence            457899999999999999999988    47999999 56999999874       3599999999999999999999999


Q ss_pred             EcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC
Q 047629          387 SDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS  466 (615)
Q Consensus       387 ~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~  466 (615)
                      .+.+++.+||||||+||+|.++|+.....        .|+|.+|++||.++|+||+|||+.+.|+|||||||++|||||+
T Consensus       141 ~e~~~~~~LVYEym~nGsL~d~L~~~~~~--------~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~  212 (361)
T KOG1187|consen  141 LEGGEHRLLVYEYMPNGSLEDHLHGKKGE--------PLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDE  212 (361)
T ss_pred             ecCCceEEEEEEccCCCCHHHHhCCCCCC--------CCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECC
Confidence            87543499999999999999999986531        3899999999999999999999999999999999999999999


Q ss_pred             CCcEEEeecCCCCCCCC------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHH
Q 047629          467 RFKAKIANFSLAAPATN------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKE  522 (615)
Q Consensus       467 ~~~~kl~DFGla~~~~~------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~  522 (615)
                      ++++||+|||+|+....                        ..+.|+|||||||+|+||+||++|.+.........+..|
T Consensus       213 ~~~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w  292 (361)
T KOG1187|consen  213 DFNAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEW  292 (361)
T ss_pred             CCCEEccCccCcccCCccccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHH
Confidence            99999999999865532                        145699999999999999999999886542222224455


Q ss_pred             HHHHHhHHHHHHHHHhhhcCCcCC-CCCCh-HHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          523 IREVLKVEEKREERLRNWMDPNLE-SFYPI-DGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~dp~l~-~~~~~-~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      ....+.     ...+.+++||++. ++++. +++.++..++.+|++.+|.+||+|.||+++|+.+...
T Consensus       293 ~~~~~~-----~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~~~  355 (361)
T KOG1187|consen  293 AKPLLE-----EGKLREIVDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVKELEGILSL  355 (361)
T ss_pred             HHHHHH-----CcchhheeCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhccc
Confidence            544432     3378999999997 77775 7889999999999999999999999999999655443

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=7.6e-42  Score=357.62  Aligned_cols=214  Identities=29%  Similarity=0.466  Sum_probs=182.7

Q ss_pred             ceEEEEEECCe-EEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATIDGK-VLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~~g~-~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      |.||.|.++|. .||||.++      ++|.+|+++|++++|+|||+|+|+|...+ .++||||||++|+|.+||......
T Consensus       220 G~V~~g~~~~~~~vavk~ik~~~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~-piyIVtE~m~~GsLl~yLr~~~~~  298 (468)
T KOG0197|consen  220 GEVWLGKWNGSTKVAVKTIKEGSMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQE-PIYIVTEYMPKGSLLDYLRTREGG  298 (468)
T ss_pred             ceEEEEEEcCCCcccceEEeccccChhHHHHHHHHHHhCcccCeEEEEEEEecCC-ceEEEEEecccCcHHHHhhhcCCC
Confidence            69999999876 89999886      46899999999999999999999998644 799999999999999999873332


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC-----------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND-----------  484 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~-----------  484 (615)
                              .+...+.+.++.|||.||+||++++   +|||||.++|||++++..+||+||||||...++           
T Consensus       299 --------~l~~~~Ll~~a~qIaeGM~YLes~~---~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~~kfP  367 (468)
T KOG0197|consen  299 --------LLNLPQLLDFAAQIAEGMAYLESKN---YIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTASEGGKFP  367 (468)
T ss_pred             --------ccchHHHHHHHHHHHHHHHHHHhCC---ccchhhhhhheeeccCceEEEcccccccccCCCceeecCCCCCC
Confidence                    3889999999999999999999998   999999999999999999999999999965322           


Q ss_pred             -------------CCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          485 -------------VMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       485 -------------~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                   ++.|||||||||+||||+| |+.|+....+.+.                     .+.++..-+-..|
T Consensus       368 IkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev---------------------~~~le~GyRlp~P  426 (468)
T KOG0197|consen  368 IKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEV---------------------LELLERGYRLPRP  426 (468)
T ss_pred             ceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCHHHH---------------------HHHHhccCcCCCC
Confidence                         5679999999999999999 9999877654221                     1122233333457


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      ..|+..+.+|++.||+.+|++|||++.+...|+.+....
T Consensus       427 ~~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l~~~~~~~  465 (468)
T KOG0197|consen  427 EGCPDEVYELMKSCWHEDPEDRPTFETLREVLEDFFTST  465 (468)
T ss_pred             CCCCHHHHHHHHHHhhCCcccCCCHHHHHHHHHHhhhcc
Confidence            788889999999999999999999999999988776543

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=8.1e-41  Score=350.40  Aligned_cols=216  Identities=32%  Similarity=0.524  Sum_probs=180.5

Q ss_pred             ceEEEEEECCeE-EEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATIDGKV-LAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~~g~~-vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||+|.|.|+. ||||++..         +|.+|+.+|.+++|||||+++|+|.+..+.+.+|||||++|+|.++|+..
T Consensus        55 g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~GsL~~~l~~~  134 (362)
T KOG0192|consen   55 GTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMPGGSLSVLLHKK  134 (362)
T ss_pred             eeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCCCCcHHHHHhhc
Confidence            699999999988 99999973         79999999999999999999999987554689999999999999999874


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC-cEEEeecCCCCCCC---------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF-KAKIANFSLAAPAT---------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-~~kl~DFGla~~~~---------  482 (615)
                      ..        ..|+|..+++|+.|||+||+|||+++.  |||||||++|||++.++ .+||+|||+++...         
T Consensus       135 ~~--------~~l~~~~~l~~aldiArGm~YLH~~~~--iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~~~~~~~  204 (362)
T KOG0192|consen  135 RK--------RKLPLKVRLRIALDIARGMEYLHSEGP--IIHRDLKSDNILVDLKGKTLKIADFGLSREKVISKTSMTSV  204 (362)
T ss_pred             cc--------CCCCHHHHHHHHHHHHHHHHHHhcCCC--eeecccChhhEEEcCCCCEEEECCCccceeeccccccccCC
Confidence            21        149999999999999999999999863  99999999999999997 99999999995431         


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                      ..++.|+|||||||+||||+||+.||..... ....               ......    ...
T Consensus       205 ~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~-~~~~---------------~~v~~~----~~R  264 (362)
T KOG0192|consen  205 AGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAP-VQVA---------------SAVVVG----GLR  264 (362)
T ss_pred             CCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCH-HHHH---------------HHHHhc----CCC
Confidence                            1267899999999999999999999987653 1110               001111    222


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      ...|.++...+..|+.+||+.||+.||++.|++..|+.+...
T Consensus       265 p~~p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~~  306 (362)
T KOG0192|consen  265 PPIPKECPPHLSSLMERCWLVDPSRRPSFLEIVSRLESIMSH  306 (362)
T ss_pred             CCCCccCCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHHh
Confidence            333445667789999999999999999999999999977654

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.5e-40  Score=360.69  Aligned_cols=231  Identities=28%  Similarity=0.452  Sum_probs=191.3

Q ss_pred             cccccccc--ceEEEEEEC-------CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEE
Q 047629          335 LSEHYSIG--KSVYRATID-------GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVY  397 (615)
Q Consensus       335 ~~~~~~iG--~~Vy~~~~~-------g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~  397 (615)
                      |.++.+-|  |.||+|...       .+.||||.++        .+|++|+++|..++|+|||+|+|+|.+.+ .+++|+
T Consensus       490 ~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~-P~~MvF  568 (774)
T KOG1026|consen  490 FKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGD-PLCMVF  568 (774)
T ss_pred             ehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCC-eeEEEE
Confidence            44444444  689999863       3679999997        46999999999999999999999998755 789999


Q ss_pred             eecCCCCHHHhhccCCCCCCCCCc----ccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEe
Q 047629          398 EYAENGSLDKWLHPKSKSSSSSGS----VIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIA  473 (615)
Q Consensus       398 E~~~~GsL~~~L~~~~~~~~~~~~----~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~  473 (615)
                      |||..|||.+||...........+    +.+|+..+.+.||.|||.||+||-++.   +|||||..+|+|+.++..+||+
T Consensus       569 EYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~---FVHRDLATRNCLVge~l~VKIs  645 (774)
T KOG1026|consen  569 EYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHH---FVHRDLATRNCLVGENLVVKIS  645 (774)
T ss_pred             EecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCc---ccccchhhhhceeccceEEEec
Confidence            999999999999876543222111    234999999999999999999999998   9999999999999999999999


Q ss_pred             ecCCCCCC-------------------------CCCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHH
Q 047629          474 NFSLAAPA-------------------------TNDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVL  527 (615)
Q Consensus       474 DFGla~~~-------------------------~~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~  527 (615)
                      ||||+|..                         .+.++++||||||||||||+++ |+.|+....+++....        
T Consensus       646 DfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~EVIe~--------  717 (774)
T KOG1026|consen  646 DFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEVIEC--------  717 (774)
T ss_pred             ccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccchHHHHHH--------
Confidence            99999753                         2347899999999999999999 9999988776443221        


Q ss_pred             hHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchh
Q 047629          528 KVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE  590 (615)
Q Consensus       528 ~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~  590 (615)
                                  +-+.++ -+.|..++.++..|+..||+++|++||+++||-..|+...+..+
T Consensus       718 ------------i~~g~l-L~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~s~  767 (774)
T KOG1026|consen  718 ------------IRAGQL-LSCPENCPTEVYSLMLECWNENPKRRPSFKEIHSRLQAWAQASP  767 (774)
T ss_pred             ------------HHcCCc-ccCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHHhcCc
Confidence                        122233 35688899999999999999999999999999999988776543

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-40  Score=357.29  Aligned_cols=219  Identities=27%  Similarity=0.475  Sum_probs=186.9

Q ss_pred             ceEEEEEE--CC---eEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DG---KVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g---~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|.+  .|   ..||||.+|        .+|..|..||.++.||||++|.|+....+ ..++|.|||+||+|+.||
T Consensus       643 GEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~-PvMIiTEyMENGsLDsFL  721 (996)
T KOG0196|consen  643 GEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSK-PVMIITEYMENGSLDSFL  721 (996)
T ss_pred             cceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCc-eeEEEhhhhhCCcHHHHH
Confidence            58999998  34   679999997        47999999999999999999999987544 689999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC-----
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND-----  484 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~-----  484 (615)
                      +.+..+         ++|.|+..++++||.||.||.+.+   +|||||.++|||++.|..+||+||||+|.+.++     
T Consensus       722 R~~DGq---------ftviQLVgMLrGIAsGMkYLsdm~---YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~~~~y  789 (996)
T KOG0196|consen  722 RQNDGQ---------FTVIQLVGMLRGIASGMKYLSDMN---YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAY  789 (996)
T ss_pred             hhcCCc---------eEeehHHHHHHHHHHHhHHHhhcC---chhhhhhhhheeeccceEEEeccccceeecccCCCccc
Confidence            987753         899999999999999999999998   999999999999999999999999999866322     


Q ss_pred             ---------------------CCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          485 ---------------------VMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       485 ---------------------~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                           ++.++|||||||||||.++ |.+|+.+..+++...                     .++
T Consensus       790 tt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQdVIk---------------------aIe  848 (996)
T KOG0196|consen  790 TTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIK---------------------AIE  848 (996)
T ss_pred             cccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcccccchHHHHH---------------------HHH
Confidence                                 5678999999999999988 999988766533211                     111


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchhhhhhc
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTETLERS  595 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~~~~~~  595 (615)
                      ...+-.-|.+|+..+.+|++.||+.|..+||.+.||+..|.++.....+++..
T Consensus       849 ~gyRLPpPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~lDklIrnP~SLk~~  901 (996)
T KOG0196|consen  849 QGYRLPPPMDCPAALYQLMLDCWQKDRNRRPKFAQIVSTLDKLIRNPNSLKTI  901 (996)
T ss_pred             hccCCCCCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCchhhccc
Confidence            22223457789999999999999999999999999999999998776665443

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-37  Score=309.59  Aligned_cols=211  Identities=26%  Similarity=0.390  Sum_probs=172.2

Q ss_pred             ccceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          341 IGKSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       341 iG~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      -||.|||+..  +++.+|+|.+.        +++.+|++++++.+||+||+++|.|........++||||.+|||++++.
T Consensus        91 ~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEYMDgGSLd~~~k  170 (364)
T KOG0581|consen   91 NGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEYMDGGSLDDILK  170 (364)
T ss_pred             CCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhhcCCCCHHHHHh
Confidence            3479999998  68999999983        4578999999999999999999998754324999999999999999998


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHh-CCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE-HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA--------  481 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~--------  481 (615)
                      ..+.          +++..+-+|+.+|++||.|||+ ++   ||||||||+|||++..+.+||+|||.++.+        
T Consensus       171 ~~g~----------i~E~~L~~ia~~VL~GL~YLh~~~~---IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS~a~tf  237 (364)
T KOG0581|consen  171 RVGR----------IPEPVLGKIARAVLRGLSYLHEERK---IIHRDIKPSNLLVNSKGEVKICDFGVSGILVNSIANTF  237 (364)
T ss_pred             hcCC----------CCHHHHHHHHHHHHHHHHHHhhccC---eeeccCCHHHeeeccCCCEEeccccccHHhhhhhcccc
Confidence            7542          8899999999999999999996 55   999999999999999999999999998543        


Q ss_pred             -------------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC---CcC
Q 047629          482 -------------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD---PNL  545 (615)
Q Consensus       482 -------------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d---p~l  545 (615)
                                   ...++.++||||||+.++|+.+|+.|+.........  |             -+.+..+++   |++
T Consensus       238 vGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~--~-------------~~Ll~~Iv~~ppP~l  302 (364)
T KOG0581|consen  238 VGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLD--I-------------FELLCAIVDEPPPRL  302 (364)
T ss_pred             cccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCC--H-------------HHHHHHHhcCCCCCC
Confidence                         223667999999999999999999999764211110  1             112233333   333


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      ...   ....++..++..|++.||.+||+++|++++=
T Consensus       303 P~~---~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~Hp  336 (364)
T KOG0581|consen  303 PEG---EFSPEFRSFVSCCLRKDPSERPSAKQLLQHP  336 (364)
T ss_pred             Ccc---cCCHHHHHHHHHHhcCCcccCCCHHHHhcCH
Confidence            322   3566789999999999999999999999863

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=4e-37  Score=319.54  Aligned_cols=210  Identities=25%  Similarity=0.474  Sum_probs=179.6

Q ss_pred             ceEEEEEECCeEEEEEEccHHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcc
Q 047629          343 KSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSV  422 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~  422 (615)
                      |.||.|.+.++.||||++++--..+|+-|++|+|+||+.+.|+|.... .++||||||+.|-|...|+..+.        
T Consensus       138 GAVF~Grl~netVAVKKV~elkETdIKHLRkLkH~NII~FkGVCtqsP-cyCIiMEfCa~GqL~~VLka~~~--------  208 (904)
T KOG4721|consen  138 GAVFLGRLHNETVAVKKVRELKETDIKHLRKLKHPNIITFKGVCTQSP-CYCIIMEFCAQGQLYEVLKAGRP--------  208 (904)
T ss_pred             cceeeeeccCceehhHHHhhhhhhhHHHHHhccCcceeeEeeeecCCc-eeEEeeeccccccHHHHHhccCc--------
Confidence            689999999999999999998889999999999999999999998654 68999999999999999987653        


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------------------
Q 047629          423 IFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------------------  482 (615)
Q Consensus       423 ~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------------------  482 (615)
                        ++-..+..|..+||.||+|||.+.   |||||||+-||||..+..+||+|||-++...                    
T Consensus       209 --itp~llv~Wsk~IA~GM~YLH~hK---IIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~STkMSFaGTVaWMAPEvI  283 (904)
T KOG4721|consen  209 --ITPSLLVDWSKGIAGGMNYLHLHK---IIHRDLKSPNILISYDDVVKISDFGTSKELSDKSTKMSFAGTVAWMAPEVI  283 (904)
T ss_pred             --cCHHHHHHHHHHhhhhhHHHHHhh---HhhhccCCCceEeeccceEEeccccchHhhhhhhhhhhhhhhHhhhCHHHh
Confidence              778889999999999999999998   9999999999999999999999999876432                    


Q ss_pred             --CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHH
Q 047629          483 --NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATL  560 (615)
Q Consensus       483 --~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l  560 (615)
                        ...+.|+||||||||||||+||..|+...+..  ...|    .              .-...|.-..|..++.-+.-|
T Consensus       284 rnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdss--AIIw----G--------------VGsNsL~LpvPstcP~GfklL  343 (904)
T KOG4721|consen  284 RNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSS--AIIW----G--------------VGSNSLHLPVPSTCPDGFKLL  343 (904)
T ss_pred             hcCCcccccceehhHHHHHHHHhcCCCccccchh--eeEE----e--------------ccCCcccccCcccCchHHHHH
Confidence              23567999999999999999999998764421  1111    1              111223345677788889999


Q ss_pred             HHHhhhcCCCCCCCHHHHHHHHHhcc
Q 047629          561 ARACTMDKSLSRPNMAEVVFNLSVLT  586 (615)
Q Consensus       561 ~~~C~~~dP~~RPsm~ev~~~L~~l~  586 (615)
                      ++.||+..|..||++++|+.+|.-..
T Consensus       344 ~Kqcw~sKpRNRPSFrqil~HldIa~  369 (904)
T KOG4721|consen  344 LKQCWNSKPRNRPSFRQILLHLDIAS  369 (904)
T ss_pred             HHHHHhcCCCCCccHHHHHHHHhhcC
Confidence            99999999999999999999997443

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6e-37  Score=320.40  Aligned_cols=222  Identities=25%  Similarity=0.404  Sum_probs=186.0

Q ss_pred             ccccccccc----ceEEEEEEC--CeEEEEEEccH------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecC
Q 047629          334 NLSEHYSIG----KSVYRATID--GKVLAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAE  401 (615)
Q Consensus       334 ~~~~~~~iG----~~Vy~~~~~--g~~vAvK~~~~------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~  401 (615)
                      ++.-+.++|    |.||.|+|.  .-.||||.+++      +|..|..+|+.++|||+|+|+|+|.. +..+|||.|||.
T Consensus       268 dItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKeikHpNLVqLLGVCT~-EpPFYIiTEfM~  346 (1157)
T KOG4278|consen  268 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTH-EPPFYIITEFMC  346 (1157)
T ss_pred             heeeeeccCCCcccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHHhhcCccHHHHhhhhcc-CCCeEEEEeccc
Confidence            445556666    489999994  57899999985      58899999999999999999999985 457999999999


Q ss_pred             CCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC
Q 047629          402 NGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA  481 (615)
Q Consensus       402 ~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  481 (615)
                      +|+|.+||++....        .++-..++.++.||+.||+||..+.   +|||||.++|+|+.++..+||+||||++++
T Consensus       347 yGNLLdYLRecnr~--------ev~avvLlyMAtQIsSaMeYLEkkn---FIHRDLAARNCLVgEnhiVKvADFGLsRlM  415 (1157)
T KOG4278|consen  347 YGNLLDYLRECNRS--------EVPAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHIVKVADFGLSRLM  415 (1157)
T ss_pred             CccHHHHHHHhchh--------hcchhHHHHHHHHHHHHHHHHHHhh---hhhhhhhhhhccccccceEEeeccchhhhh
Confidence            99999999987653        3667778999999999999999988   999999999999999999999999999987


Q ss_pred             CCC------------------------CCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHH
Q 047629          482 TND------------------------VMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREER  536 (615)
Q Consensus       482 ~~~------------------------~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  536 (615)
                      +.+                        ++-|+|||+|||+|||+.| |..|+...+-       ..+...          
T Consensus       416 tgDTYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGidl-------SqVY~L----------  478 (1157)
T KOG4278|consen  416 TGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDL-------SQVYGL----------  478 (1157)
T ss_pred             cCCceecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCccH-------HHHHHH----------
Confidence            543                        4569999999999999999 8899876541       111111          


Q ss_pred             HhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          537 LRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       537 ~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                          +....+-+.|..|+.++.+|++.||+++|.+||+++|+-+.++.+.++
T Consensus       479 ----LEkgyRM~~PeGCPpkVYeLMraCW~WsPsDRPsFaeiHqafEtmf~~  526 (1157)
T KOG4278|consen  479 ----LEKGYRMDGPEGCPPKVYELMRACWNWSPSDRPSFAEIHQAFETMFSS  526 (1157)
T ss_pred             ----HhccccccCCCCCCHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhcc
Confidence                112222345778899999999999999999999999999999987655

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-36  Score=341.72  Aligned_cols=220  Identities=30%  Similarity=0.425  Sum_probs=183.0

Q ss_pred             ceEEEEEE---CCe----EEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI---DGK----VLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~---~g~----~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||+|.+   +|.    .||||.++        .+|.+|..+|++++|||||+++|+|.+ .+..+|++|||++|+|..
T Consensus       706 G~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~-~~~~~i~leyM~gGDL~s  784 (1025)
T KOG1095|consen  706 GEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLD-SGPPLILLEYMEGGDLLS  784 (1025)
T ss_pred             cceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecC-CCCcEEEehhcccCcHHH
Confidence            68999998   443    48999986        368999999999999999999999997 558999999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ||++.+.....   ...|+..+++.++.|||+|+.||++++   +|||||.++|+||+....+||+|||||+...     
T Consensus       785 flr~~r~~~~~---~~~L~~~dLl~~a~dvA~G~~YLe~~~---fvHRDLAaRNCLL~~~r~VKIaDFGlArDiy~~~yy  858 (1025)
T KOG1095|consen  785 FLRESRPAPFQ---PSNLSMRDLLAFALDVAKGMNYLESKH---FVHRDLAARNCLLDERRVVKIADFGLARDIYDKDYY  858 (1025)
T ss_pred             HHHhcccccCC---CCCCCHHHHHHHHHHHhhhhHHHHhCC---CcCcchhhhheeecccCcEEEcccchhHhhhhchhe
Confidence            99987543211   235999999999999999999999998   9999999999999999999999999998321     


Q ss_pred             --------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 --------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 --------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                          ..++.|+|||||||+|||++| |..|+....+.+....+      ..             
T Consensus       859 r~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v~~~~------~~-------------  919 (1025)
T KOG1095|consen  859 RKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVLLDV------LE-------------  919 (1025)
T ss_pred             eccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHHHHHHH------Hh-------------
Confidence                                226789999999999999999 88999876643222111      10             


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchh
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE  590 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~  590 (615)
                      +.+  -+.|..|+.++.+|++.||+.+|++||+++.|++.+..+.+...
T Consensus       920 ggR--L~~P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i~~~~~  966 (1025)
T KOG1095|consen  920 GGR--LDPPSYCPEKLYQLMLQCWKHDPEDRPSFRTIVEQDPAISNAAL  966 (1025)
T ss_pred             CCc--cCCCCCCChHHHHHHHHHccCChhhCccHHHHHhhhhhhhhhhc
Confidence            112  24577888999999999999999999999999999887765543

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=1.6e-35  Score=304.60  Aligned_cols=212  Identities=24%  Similarity=0.432  Sum_probs=171.0

Q ss_pred             ceEEEEEECCeEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEc--C-CCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATIDGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSD--S-QGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~--~-~~~~~lV~E~~~~GsL~~~L  409 (615)
                      +.||+|.++|+.||||+++          +.+.+|+.+|.+++||||++++|++.+  . ....++||||+++|+|.+++
T Consensus        34 ~~v~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~~~g~L~~~l  113 (283)
T PHA02988         34 NSIYKGIFNNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYCTRGYLREVL  113 (283)
T ss_pred             eEEEEEEECCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEeCCCCcHHHHH
Confidence            4799999999999999985          235689999999999999999999865  2 23578999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhC-CCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH-AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      ....          .++|....+++.|++.||.|||+. +   ++||||||+|||+++++.+||+|||+++...      
T Consensus       114 ~~~~----------~~~~~~~~~i~~~i~~~l~~lH~~~~---~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~~~~  180 (283)
T PHA02988        114 DKEK----------DLSFKTKLDMAIDCCKGLYNLYKYTN---KPYKNLTSVSFLVTENYKLKIICHGLEKILSSPPFKN  180 (283)
T ss_pred             hhCC----------CCChhHHHHHHHHHHHHHHHHHhcCC---CCCCcCChhhEEECCCCcEEEcccchHhhhccccccc
Confidence            7643          288999999999999999999985 5   7799999999999999999999999986311      


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                      ..++.++|||||||++|||++|+.||......+   ...   .          .......+   
T Consensus       181 ~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~~---~~~---~----------i~~~~~~~---  241 (283)
T PHA02988        181 VNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTTKE---IYD---L----------IINKNNSL---  241 (283)
T ss_pred             cCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCHHH---HHH---H----------HHhcCCCC---
Confidence                            235679999999999999999999997543211   110   0          00111111   


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhccc
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~  587 (615)
                       ..+......+.+++.+||+.||++|||++|+++.|+.+.+
T Consensus       242 -~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~~~  281 (283)
T PHA02988        242 -KLPLDCPLEIKCIVEACTSHDSIKRPNIKEILYNLSLYKF  281 (283)
T ss_pred             -CCCCcCcHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHh
Confidence             2233455678999999999999999999999999987653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.5e-34  Score=345.40  Aligned_cols=243  Identities=26%  Similarity=0.493  Sum_probs=188.0

Q ss_pred             eeHHHHHHHccccccccccc----ceEEEEEE--CCeEEEEEEccH---HHHHHHHHHHhcCCCCcccEEEEEEcCCCcE
Q 047629          323 YEIEVIMESTMNLSEHYSIG----KSVYRATI--DGKVLAVKKIKE---DVTEELRILQRINHANLVKLMGVSSDSQGNR  393 (615)
Q Consensus       323 ~~~~~l~~at~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~---~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~  393 (615)
                      ++++++..+   +.+...+|    |.||+|..  +|+.||||+++.   ...+|++.+++++|||||+++|+|.+.+ ..
T Consensus       683 ~~~~~~~~~---~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~l~~l~HpnIv~~~~~~~~~~-~~  758 (968)
T PLN00113        683 ITINDILSS---LKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSIPSSEIADMGKLQHPNIVKLIGLCRSEK-GA  758 (968)
T ss_pred             hhHHHHHhh---CCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCccccHHHHHHHhhCCCCCcceEEEEEEcCC-CC
Confidence            345555543   44444555    58999996  789999999863   2356899999999999999999998654 78


Q ss_pred             EEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEe
Q 047629          394 FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIA  473 (615)
Q Consensus       394 ~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~  473 (615)
                      ++||||+++|+|.++++.             ++|.++.+|+.|+|.||+|||+++.++|+||||||+||+++.++.+++.
T Consensus       759 ~lv~Ey~~~g~L~~~l~~-------------l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~  825 (968)
T PLN00113        759 YLIHEYIEGKNLSEVLRN-------------LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR  825 (968)
T ss_pred             EEEEeCCCCCcHHHHHhc-------------CCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE
Confidence            999999999999999952             8899999999999999999998777779999999999999999888775


Q ss_pred             ecCCCCCC-------------------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHH
Q 047629          474 NFSLAAPA-------------------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKRE  534 (615)
Q Consensus       474 DFGla~~~-------------------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~  534 (615)
                       ||.+...                   ...++.|+|||||||++|||++|+.|++...... ....+|.+....     .
T Consensus       826 -~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~-~~~~~~~~~~~~-----~  898 (968)
T PLN00113        826 -LSLPGLLCTDTKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVH-GSIVEWARYCYS-----D  898 (968)
T ss_pred             -eccccccccCCCccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCCC-CcHHHHHHHhcC-----c
Confidence             5543211                   1236779999999999999999999986433211 112223322211     1


Q ss_pred             HHHhhhcCCcCCCC--CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          535 ERLRNWMDPNLESF--YPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       535 ~~~~~~~dp~l~~~--~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      .....++||.+...  .+.++..++.+++.+||+.||++||+|+||++.|+.+.+..
T Consensus       899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~~L~~~~~~~  955 (968)
T PLN00113        899 CHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLKTLESASRSS  955 (968)
T ss_pred             cchhheeCccccCCCCccHHHHHHHHHHHHhhCcCCchhCcCHHHHHHHHHHhhccc
Confidence            23456778777543  34567778999999999999999999999999999886654

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-34  Score=302.78  Aligned_cols=232  Identities=25%  Similarity=0.411  Sum_probs=182.9

Q ss_pred             HHHHHHHccccccccccc--ceEEEEEECC-eEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcE
Q 047629          325 IEVIMESTMNLSEHYSIG--KSVYRATIDG-KVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNR  393 (615)
Q Consensus       325 ~~~l~~at~~~~~~~~iG--~~Vy~~~~~g-~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~  393 (615)
                      .+|..+..--|.++.+-|  |.|..+..+| ..||||.++        .+|.+|+++|.+++|||||+|+|+|...+ .+
T Consensus       532 l~EfPRs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~De-Pi  610 (807)
T KOG1094|consen  532 LVEFPRSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDD-PL  610 (807)
T ss_pred             hhhcchhheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCC-ch
Confidence            344444444455555555  5788888866 999999997        46899999999999999999999998654 78


Q ss_pred             EEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEe
Q 047629          394 FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIA  473 (615)
Q Consensus       394 ~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~  473 (615)
                      ++++|||++|+|.+||..+...        .+.-....+|+.|||.||+||.+..   +|||||.++|||+|.++++||+
T Consensus       611 cmI~EYmEnGDLnqFl~aheap--------t~~t~~~vsi~tqiasgmaYLes~n---fVHrd~a~rNcLv~~e~~iKia  679 (807)
T KOG1094|consen  611 CMITEYMENGDLNQFLSAHELP--------TAETAPGVSICTQIASGMAYLESLN---FVHRDLATRNCLVDGEFTIKIA  679 (807)
T ss_pred             HHHHHHHhcCcHHHHHHhccCc--------ccccchhHHHHHHHHHHHHHHHhhc---hhhccccccceeecCcccEEec
Confidence            9999999999999999887542        1355567789999999999999998   9999999999999999999999


Q ss_pred             ecCCCCCCC-------------------------CCCCCcccchhHHHHHHHHHc--CCCCCCCCCCChhHHHHHHHHHH
Q 047629          474 NFSLAAPAT-------------------------NDVMPKFDVFAFGVVLLELLS--GKKATRTTENGKTAVLWKEIREV  526 (615)
Q Consensus       474 DFGla~~~~-------------------------~~~~~k~DV~SfGvvl~Ellt--G~~p~~~~~~~~~~~l~~~~~~~  526 (615)
                      |||+++-+.                         +.+++++|||+|||+|||+++  ...|+....+....         
T Consensus       680 dfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vv---------  750 (807)
T KOG1094|consen  680 DFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVV---------  750 (807)
T ss_pred             CcccccccccCCceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHH---------
Confidence            999998432                         237899999999999999866  67788654432111         


Q ss_pred             HhHHHHHHHHHhhhcCC---cCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          527 LKVEEKREERLRNWMDP---NLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       527 ~~~~~~~~~~~~~~~dp---~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                              +...++.+.   ..--..|.-++.++.+++.+||..|-++||+++++...|+..
T Consensus       751 --------en~~~~~~~~~~~~~l~~P~~cp~~lyelml~Cw~~es~~RPsFe~lh~~lq~~  804 (807)
T KOG1094|consen  751 --------ENAGEFFRDQGRQVVLSRPPACPQGLYELMLRCWRRESEQRPSFEQLHLFLQED  804 (807)
T ss_pred             --------HhhhhhcCCCCcceeccCCCcCcHHHHHHHHHHhchhhhcCCCHHHHHHHHHHh
Confidence                    111222221   112334667888899999999999999999999999888653

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7.6e-35  Score=307.98  Aligned_cols=202  Identities=28%  Similarity=0.433  Sum_probs=169.1

Q ss_pred             eEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          344 SVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       344 ~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      .+|+++.  .|+.||+|++.+          .+.+||+|.++|+|||||++++++.+.+ +.|+|.|+|++|+|.++++.
T Consensus        33 ~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~-nVYivLELC~~~sL~el~Kr  111 (592)
T KOG0575|consen   33 RCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSN-NVYIVLELCHRGSLMELLKR  111 (592)
T ss_pred             EEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCC-ceEEEEEecCCccHHHHHHh
Confidence            7999987  799999999853          4678999999999999999999988755 89999999999999999985


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC-------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND-------  484 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~-------  484 (615)
                      ..          .|++.+...++.||+.||.|||+++   |+|||||..|++|++++++||+|||||.....+       
T Consensus       112 rk----------~ltEpEary~l~QIv~GlkYLH~~~---IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~Erk~Tl  178 (592)
T KOG0575|consen  112 RK----------PLTEPEARYFLRQIVEGLKYLHSLG---IIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGERKKTL  178 (592)
T ss_pred             cC----------CCCcHHHHHHHHHHHHHHHHHHhcC---ceecccchhheeecCcCcEEecccceeeeecCccccccee
Confidence            44          3999999999999999999999998   999999999999999999999999999765321       


Q ss_pred             ----------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          485 ----------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       485 ----------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                      .+..+||||+|||||.|+.|++||+...-          .+.+..     -+..+       -.
T Consensus       179 CGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~v----------kety~~-----Ik~~~-------Y~  236 (592)
T KOG0575|consen  179 CGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTV----------KETYNK-----IKLNE-------YS  236 (592)
T ss_pred             cCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchH----------HHHHHH-----HHhcC-------cc
Confidence                            34578999999999999999999986541          111110     01111       12


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +|.....+..+|+...++.||.+|||+++|+..
T Consensus       237 ~P~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~h  269 (592)
T KOG0575|consen  237 MPSHLSAEAKDLIRKLLRPNPSERPSLDEVLDH  269 (592)
T ss_pred             cccccCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            344555667899999999999999999999985

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.9e-35  Score=301.24  Aligned_cols=226  Identities=25%  Similarity=0.319  Sum_probs=171.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH---------HHHHHHHHHhcCCCCcccEEEEEEcC-CCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKED---------VTEELRILQRINHANLVKLMGVSSDS-QGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~---------~~~Ei~~l~~l~H~niv~l~g~~~~~-~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||++..  +|+.||+|+++-+         ..+||.||++|+||||++|.+...+. .+.+|||+|||++ +|.-++.
T Consensus       131 g~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlVFeYMdh-DL~GLl~  209 (560)
T KOG0600|consen  131 GQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLVFEYMDH-DLSGLLS  209 (560)
T ss_pred             hheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEEEecccc-hhhhhhc
Confidence            58999997  8999999999732         56899999999999999999998765 4579999999987 9999887


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------  483 (615)
                      ...-         .++..++..++.|++.||+|+|+++   |+|||||.+|||||.+|.+||+|||||+....       
T Consensus       210 ~p~v---------kft~~qIKc~mkQLl~Gl~~cH~~g---vlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~~~T  277 (560)
T KOG0600|consen  210 SPGV---------KFTEPQIKCYMKQLLEGLEYCHSRG---VLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGSAPYT  277 (560)
T ss_pred             CCCc---------ccChHHHHHHHHHHHHHHHHHhhcC---eeeccccccceEEcCCCCEEeccccceeeccCCCCcccc
Confidence            6542         3999999999999999999999998   99999999999999999999999999985421       


Q ss_pred             ------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          484 ------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       484 ------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                        .+++++|+||.||||.||+.|++.+....+-+....+-.+........+...++....-...
T Consensus       278 ~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~~~kp  357 (560)
T KOG0600|consen  278 SRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPVSKLPHATIFKP  357 (560)
T ss_pred             cceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhccccccCCcccccCC
Confidence                              26789999999999999999999988765433332221111111111111111111100011


Q ss_pred             CCCCCh-------HHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          546 ESFYPI-------DGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       546 ~~~~~~-------~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ...|..       ......++|+...+..||.+|.|+.++++.
T Consensus       358 ~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~s  400 (560)
T KOG0600|consen  358 QQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSALQS  400 (560)
T ss_pred             CCcccchHHHHhccCCHHHHHHHHHHhccCccccccHHHHhcC
Confidence            111111       223356889999999999999999998874

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.1e-35  Score=296.15  Aligned_cols=209  Identities=25%  Similarity=0.321  Sum_probs=163.9

Q ss_pred             eEEEEEE--CCeEEEEEEccH--------------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          344 SVYRATI--DGKVLAVKKIKE--------------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       344 ~Vy~~~~--~g~~vAvK~~~~--------------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      .|-.|.-  +|+.||||.+.+              ++.+|+++|++++|||||++.+++...+ ..|+|||||++|+|.+
T Consensus       187 ~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~d-s~YmVlE~v~GGeLfd  265 (475)
T KOG0615|consen  187 LVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPD-SSYMVLEYVEGGELFD  265 (475)
T ss_pred             EEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCC-ceEEEEEEecCccHHH
Confidence            5666654  799999999863              2468999999999999999999987654 7899999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC---CcEEEeecCCCCCCCCC
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR---FKAKIANFSLAAPATND  484 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~---~~~kl~DFGla~~~~~~  484 (615)
                      ++-.+..          +.+..-..++.|++.|+.|||+++   |+||||||+|||+..+   ..+||+|||+|+.....
T Consensus       266 ~vv~nk~----------l~ed~~K~~f~Qll~avkYLH~~G---I~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~~  332 (475)
T KOG0615|consen  266 KVVANKY----------LREDLGKLLFKQLLTAVKYLHSQG---IIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGEG  332 (475)
T ss_pred             HHHhccc----------cccchhHHHHHHHHHHHHHHHHcC---cccccCCcceEEeccCCcceEEEecccchhhccccc
Confidence            9987653          666677889999999999999999   9999999999999766   78999999999875321


Q ss_pred             -------------------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhh
Q 047629          485 -------------------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRN  539 (615)
Q Consensus       485 -------------------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  539 (615)
                                               +..|+|+||+|||||-+++|.+||........  +.+.+.         .++.  
T Consensus       333 sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~s--l~eQI~---------~G~y--  399 (475)
T KOG0615|consen  333 SFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPS--LKEQIL---------KGRY--  399 (475)
T ss_pred             eehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCcc--HHHHHh---------cCcc--
Confidence                                     22388999999999999999999976543221  111110         0000  


Q ss_pred             hcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          540 WMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       540 ~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      ..    ...+..+...+..+|+.+++..||++|||+.|++++-.
T Consensus       400 ~f----~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~hpW  439 (475)
T KOG0615|consen  400 AF----GPLQWDRISEEALDLINWMLVVDPENRPSADEALNHPW  439 (475)
T ss_pred             cc----cChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhcChh
Confidence            00    01112244557899999999999999999999998643

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-34  Score=292.04  Aligned_cols=157  Identities=29%  Similarity=0.516  Sum_probs=139.9

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH---------HHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIKED---------VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~---------~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||+|+.  +|..||||.+...         ...|+.+|+.++|+|||+|++++...+ .+|||||||.+|+|.+||+.
T Consensus        24 avVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~-~i~lVMEyC~gGDLs~yi~~  102 (429)
T KOG0595|consen   24 AVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDD-FIYLVMEYCNGGDLSDYIRR  102 (429)
T ss_pred             EEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCC-eEEEEEEeCCCCCHHHHHHH
Confidence            48999998  7899999988533         467999999999999999999987654 89999999999999999998


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC------CcEEEeecCCCCCCCC--
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR------FKAKIANFSLAAPATN--  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~------~~~kl~DFGla~~~~~--  483 (615)
                      .+.          +++.....++.|+|.||++||+++   ||||||||.||||+..      -.+||+|||+|+.+..  
T Consensus       103 ~~~----------l~e~t~r~Fm~QLA~alq~L~~~~---IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~  169 (429)
T KOG0595|consen  103 RGR----------LPEATARHFMQQLASALQFLHENN---IIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGS  169 (429)
T ss_pred             cCC----------CCHHHHHHHHHHHHHHHHHHHHCC---eeeccCCcceEEeccCCCCCCCceEEecccchhhhCCchh
Confidence            753          899999999999999999999998   9999999999999875      4689999999987643  


Q ss_pred             --------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCC
Q 047629          484 --------------------DVMPKFDVFAFGVVLLELLSGKKATRTTEN  513 (615)
Q Consensus       484 --------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~  513 (615)
                                          .|..|+|+||.|++|||+++|+.||+....
T Consensus       170 ~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~  219 (429)
T KOG0595|consen  170 MAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAETP  219 (429)
T ss_pred             HHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccccCH
Confidence                                367799999999999999999999986553

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-35  Score=302.87  Aligned_cols=222  Identities=25%  Similarity=0.394  Sum_probs=177.1

Q ss_pred             ceEEEEEE--CCeEEEEEEccHHH--------HHHHHHHHhcC-CCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIKEDV--------TEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~~--------~~Ei~~l~~l~-H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |+||+|+-  +|+.||||+|++.|        .+|+..|++|+ |||||+|..++.+.+..+++|||||+. +|++.++.
T Consensus        24 GsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~fVfE~Md~-NLYqLmK~  102 (538)
T KOG0661|consen   24 GSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFVFEFMDC-NLYQLMKD  102 (538)
T ss_pred             eeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEeeeHHhhhh-hHHHHHhh
Confidence            58999986  79999999999754        47999999998 999999999998877689999999975 99999988


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--------  483 (615)
                      ++.         .+++..+..|+.||..||+|+|.+|   +.|||+||+|||+..+..+||+||||||....        
T Consensus       103 R~r---------~fse~~irnim~QilqGL~hiHk~G---fFHRDlKPENiLi~~~~~iKiaDFGLARev~SkpPYTeYV  170 (538)
T KOG0661|consen  103 RNR---------LFSESDIRNIMYQILQGLAHIHKHG---FFHRDLKPENILISGNDVIKIADFGLAREVRSKPPYTEYV  170 (538)
T ss_pred             cCC---------cCCHHHHHHHHHHHHHHHHHHHhcC---cccccCChhheEecccceeEecccccccccccCCCcchhh
Confidence            743         5999999999999999999999999   99999999999999999999999999986532        


Q ss_pred             ---------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHH---HHH-HHHhhhcCCc
Q 047629          484 ---------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE---KRE-ERLRNWMDPN  544 (615)
Q Consensus       484 ---------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~---~~~-~~~~~~~dp~  544 (615)
                                     .++.+.||||+|||++|+.+=++-|.+..+-+..  + .+.+++....   ..+ ..+...|.=+
T Consensus       171 STRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi--~-KIc~VLGtP~~~~~~eg~~La~~mnf~  247 (538)
T KOG0661|consen  171 STRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQI--Y-KICEVLGTPDKDSWPEGYNLASAMNFR  247 (538)
T ss_pred             hcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHH--H-HHHHHhCCCccccchhHHHHHHHhccC
Confidence                           2567899999999999999999888765543322  2 2344432211   111 1222222211


Q ss_pred             --------CCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          545 --------LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       545 --------l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                              +..-.+. ...+.++|+.+|+.+||.+|||+.|.+++
T Consensus       248 ~P~~~~~~l~~L~p~-~s~~~~~li~~ll~WDP~kRpTA~~al~~  291 (538)
T KOG0661|consen  248 FPQVKPSPLKDLLPN-ASSEAASLIERLLAWDPDKRPTASQALQH  291 (538)
T ss_pred             CCcCCCCChHHhCcc-cCHHHHHHHHHHhcCCCccCccHHHHhcC
Confidence                    1122222 56678999999999999999999999986

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-35  Score=309.24  Aligned_cols=220  Identities=28%  Similarity=0.485  Sum_probs=179.4

Q ss_pred             ceEEEEEECCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |+||||.|.|. ||||.++         +.|.+|+.++++-+|.||+-++|||...  .+.||..+|++-+|+.+||..+
T Consensus       406 GtV~Rg~whGd-VAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p--~~AIiTqwCeGsSLY~hlHv~e  482 (678)
T KOG0193|consen  406 GTVYRGRWHGD-VAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNP--PLAIITQWCEGSSLYTHLHVQE  482 (678)
T ss_pred             cceeecccccc-eEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCC--ceeeeehhccCchhhhhccchh
Confidence            69999999885 8999996         4589999999999999999999999753  4599999999999999999865


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC------------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA------------  481 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~------------  481 (615)
                      .         .|+..+.+.||.|||.|+.|||.++   |||||||+.||+|++++++||+||||+...            
T Consensus       483 t---------kfdm~~~idIAqQiaqGM~YLHAK~---IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~~q~~qp  550 (678)
T KOG0193|consen  483 T---------KFDMNTTIDIAQQIAQGMDYLHAKN---IIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQP  550 (678)
T ss_pred             h---------hhhHHHHHHHHHHHHHhhhhhhhhh---hhhhhccccceEEccCCcEEEecccceeeeeeeccccccCCC
Confidence            3         3999999999999999999999998   999999999999999999999999998431            


Q ss_pred             ----------------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          482 ----------------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       482 ----------------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                      .+.++..+||||||+|+|||++|..|+. ....+. .+|.    +          -+....|++
T Consensus       551 ~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPys-i~~~dq-Iifm----V----------GrG~l~pd~  614 (678)
T KOG0193|consen  551 HGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYS-IQNRDQ-IIFM----V----------GRGYLMPDL  614 (678)
T ss_pred             ccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcC-CCChhh-eEEE----e----------cccccCccc
Confidence                            2347889999999999999999999998 332221 1111    0          011111222


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchhhhhh
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTETLER  594 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~~~~~  594 (615)
                      . ....++...|.+|+..||..++++||.+.+|+..|+.+..+...+.|
T Consensus       615 s-~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~~~pki~R  662 (678)
T KOG0193|consen  615 S-KIRSNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELLPSLPKINR  662 (678)
T ss_pred             h-hhhccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhhccccccc
Confidence            1 11235667899999999999999999999999999888776544444

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.3e-35  Score=310.21  Aligned_cols=215  Identities=29%  Similarity=0.499  Sum_probs=176.4

Q ss_pred             ceEEEEEE---CC--eE-EEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI---DG--KV-LAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~---~g--~~-vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      |.||+|.+   ++  .. ||||..+.          +|.+|.++|++++|+|||+++|++...+ .++||||+|+||+|.
T Consensus       171 GeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~-Pl~ivmEl~~gGsL~  249 (474)
T KOG0194|consen  171 GEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEE-PLMLVMELCNGGSLD  249 (474)
T ss_pred             cEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCC-ccEEEEEecCCCcHH
Confidence            68999998   22  23 89998872          4788999999999999999999998654 799999999999999


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----  482 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----  482 (615)
                      +||.....         .++..+++.++.+.|.||+|||++.   ++||||.++|+|++.++.+||+||||++...    
T Consensus       250 ~~L~k~~~---------~v~~~ek~~~~~~AA~Gl~YLh~k~---~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~~~~  317 (474)
T KOG0194|consen  250 DYLKKNKK---------SLPTLEKLRFCYDAARGLEYLHSKN---CIHRDIAARNCLYSKKGVVKISDFGLSRAGSQYVM  317 (474)
T ss_pred             HHHHhCCC---------CCCHHHHHHHHHHHHhHHHHHHHCC---CcchhHhHHHheecCCCeEEeCccccccCCcceee
Confidence            99987654         2899999999999999999999998   9999999999999999999999999986542    


Q ss_pred             -------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          483 -------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       483 -------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                         .-++.++|||||||++||+++ |..|+.+....+       +..          ++   +-
T Consensus       318 ~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~~-------v~~----------kI---~~  377 (474)
T KOG0194|consen  318 KKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNYE-------VKA----------KI---VK  377 (474)
T ss_pred             ccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCHHH-------HHH----------HH---Hh
Confidence                               125789999999999999999 888987654211       111          11   01


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchh
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE  590 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~  590 (615)
                      .......+...+..+..++..||..+|++||+|.++.+.|+.+....+
T Consensus       378 ~~~r~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~~~  425 (474)
T KOG0194|consen  378 NGYRMPIPSKTPKELAKVMKQCWKKDPEDRPTMSTIKKKLEALEKKKE  425 (474)
T ss_pred             cCccCCCCCCCHHHHHHHHHHhccCChhhccCHHHHHHHHHHHHhccc
Confidence            111223344566678899999999999999999999999998876644

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-34  Score=291.70  Aligned_cols=238  Identities=24%  Similarity=0.389  Sum_probs=186.3

Q ss_pred             ceEEEEEECCeEEEEEEcc----HHHHHHHHHHHh--cCCCCcccEEEEEEcCC---CcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATIDGKVLAVKKIK----EDVTEELRILQR--INHANLVKLMGVSSDSQ---GNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~----~~~~~Ei~~l~~--l~H~niv~l~g~~~~~~---~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||||.++++.||||++.    ..|.+|-+|.+.  ++|+||++++++-...+   -+.+||+||.++|||.+||..+ 
T Consensus       224 g~V~KaqL~~~~VAVKifp~~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh~kGsL~dyL~~n-  302 (534)
T KOG3653|consen  224 GCVWKAQLDNRLVAVKIFPEQEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVTEFHPKGSLCDYLKAN-  302 (534)
T ss_pred             ceeehhhccCceeEEEecCHHHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEeeeccCCcHHHHHHhc-
Confidence            5899999999999999996    458888888775  58999999999854322   2589999999999999999875 


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhC------CCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC---
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH------AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND---  484 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~------~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~---  484 (615)
                                .++|....+|+..+++||+|||+.      .+|+|+|||||++|||+.+++.+.|+|||||..+...   
T Consensus       303 ----------tisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~~~  372 (534)
T KOG3653|consen  303 ----------TISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGKPQ  372 (534)
T ss_pred             ----------cccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEecCCCCC
Confidence                      389999999999999999999974      4788999999999999999999999999999654211   


Q ss_pred             ----------------------------CCCcccchhHHHHHHHHHcCCCCCCCCC-CChhHHHHHHHHHHHhHHHHHHH
Q 047629          485 ----------------------------VMPKFDVFAFGVVLLELLSGKKATRTTE-NGKTAVLWKEIREVLKVEEKREE  535 (615)
Q Consensus       485 ----------------------------~~~k~DV~SfGvvl~ElltG~~p~~~~~-~~~~~~l~~~~~~~~~~~~~~~~  535 (615)
                                                  .-.+.||||+|.|||||+++....+... ..-......++......++.+.-
T Consensus       373 ~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt~e~mq~~  452 (534)
T KOG3653|consen  373 GDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHPTLEEMQEL  452 (534)
T ss_pred             cchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCCCHHHHHHH
Confidence                                        1136899999999999999887664322 11122222234444444555555


Q ss_pred             HHhhhcCCcCCCCCCh-HHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchhh
Q 047629          536 RLRNWMDPNLESFYPI-DGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTET  591 (615)
Q Consensus       536 ~~~~~~dp~l~~~~~~-~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~~  591 (615)
                      .+++...|.+...+-. ..+..+.+.+..||..||+.|-|+.-|.+++..+....+.
T Consensus       453 VV~kK~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~~~~~~  509 (534)
T KOG3653|consen  453 VVRKKQRPKIPDAWRKHAGMAVLCETIEECWDHDAEARLTAGCVEERMAELMMLWED  509 (534)
T ss_pred             HHhhccCCCChhhhhcCccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHhccCCc
Confidence            6666677776543332 3456689999999999999999999999999888766543

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=6.8e-34  Score=299.63  Aligned_cols=222  Identities=27%  Similarity=0.406  Sum_probs=170.2

Q ss_pred             ceEEEEEE-------CCeEEEEEEcc--------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI-------DGKVLAVKKIK--------EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~-------~g~~vAvK~~~--------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      |.||+|..       .++.||||+++        ..+.+|+.++.++ +||||++++|+|...++..++||||+++|+|.
T Consensus        21 g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv~ey~~~g~L~  100 (338)
T cd05102          21 GKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNGPLMVIVEFCKYGNLS  100 (338)
T ss_pred             ceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCCceEEEEecCCCCcHH
Confidence            58999974       24679999985        2467899999999 89999999999876555689999999999999


Q ss_pred             HhhccCCCCCCC----------------------------------------------------CCcccccCHHHHHHHH
Q 047629          407 KWLHPKSKSSSS----------------------------------------------------SGSVIFLTWSQRLRVA  434 (615)
Q Consensus       407 ~~L~~~~~~~~~----------------------------------------------------~~~~~~l~~~~~~~i~  434 (615)
                      +++.........                                                    ......+++..+..++
T Consensus       101 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  180 (338)
T cd05102         101 NFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDLWKSPLTMEDLICYS  180 (338)
T ss_pred             HHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhccccccCCCCHHHHHHHH
Confidence            999753210000                                                    0001248899999999


Q ss_pred             HHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------------------------CCCCCcc
Q 047629          435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------------------------NDVMPKF  489 (615)
Q Consensus       435 ~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------------------------~~~~~k~  489 (615)
                      .|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...                         ..++.++
T Consensus       181 ~qi~~aL~~LH~~~---ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~s  257 (338)
T cd05102         181 FQVARGMEFLASRK---CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQS  257 (338)
T ss_pred             HHHHHHHHHHHHCC---EECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCcHHhhcCCCCccc
Confidence            99999999999988   9999999999999999999999999986421                         1246789


Q ss_pred             cchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcC
Q 047629          490 DVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDK  568 (615)
Q Consensus       490 DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~d  568 (615)
                      |||||||+||||++ |+.||......+.  ..    .          .+..-..+.    .+......+.+|+.+||+.|
T Consensus       258 DiwslG~il~el~~~g~~pf~~~~~~~~--~~----~----------~~~~~~~~~----~~~~~~~~l~~li~~cl~~d  317 (338)
T cd05102         258 DVWSFGVLLWEIFSLGASPYPGVQINEE--FC----Q----------RLKDGTRMR----APENATPEIYRIMLACWQGD  317 (338)
T ss_pred             CHHHHHHHHHHHHhCCCCCCCCCCccHH--HH----H----------HHhcCCCCC----CCCCCCHHHHHHHHHHccCC
Confidence            99999999999997 9999875432211  00    0          011101111    12233456889999999999


Q ss_pred             CCCCCCHHHHHHHHHhccc
Q 047629          569 SLSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       569 P~~RPsm~ev~~~L~~l~~  587 (615)
                      |++||++.|+++.|+.+.+
T Consensus       318 p~~RPs~~el~~~l~~~~~  336 (338)
T cd05102         318 PKERPTFSALVEILGDLLQ  336 (338)
T ss_pred             hhhCcCHHHHHHHHHHHHh
Confidence            9999999999999987654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=9.2e-34  Score=287.43  Aligned_cols=207  Identities=34%  Similarity=0.584  Sum_probs=161.6

Q ss_pred             ceEEEEEEC------CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATID------GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~~------g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||+|.+.      +..|+||.++        +++.+|++.+++++|+||++++|+|.+. +..++|+||+++|+|.++
T Consensus        13 g~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~-~~~~lv~e~~~~g~L~~~   91 (259)
T PF07714_consen   13 GKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIEN-EPLFLVMEYCPGGSLDDY   91 (259)
T ss_dssp             EEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESS-SSEEEEEE--TTEBHHHH
T ss_pred             cEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeeccccccccccccccccccccccc-cccccccccccccccccc
Confidence            589999997      6889999994        3578899999999999999999999854 469999999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-----
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-----  483 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-----  483 (615)
                      |......        .+++.++.+|+.|++.||.|||+++   ++|+||+++||++++++.+||+|||+++....     
T Consensus        92 L~~~~~~--------~~~~~~~~~i~~~i~~~l~~Lh~~~---iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~  160 (259)
T PF07714_consen   92 LKSKNKE--------PLSEQQRLSIAIQIAEALSYLHSNN---IIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKYK  160 (259)
T ss_dssp             HHHTCTT--------TSBHHHHHHHHHHHHHHHHHHHHTT---EEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSEE
T ss_pred             ccccccc--------ccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccc
Confidence            9886221        3899999999999999999999997   99999999999999999999999999876511     


Q ss_pred             --------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          484 --------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       484 --------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                          ..+.++||||||+++|||++ |+.|+......+   ..              ..+.+   
T Consensus       161 ~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~~~---~~--------------~~~~~---  220 (259)
T PF07714_consen  161 NDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYDNEE---II--------------EKLKQ---  220 (259)
T ss_dssp             ESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSCHHH---HH--------------HHHHT---
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc---cc--------------ccccc---
Confidence                                13568999999999999999 678876543111   00              01111   


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      .. ....+......+.+++..||+.||++||+|+|+++.|
T Consensus       221 ~~-~~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  221 GQ-RLPIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             TE-ETTSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             cc-cceeccchhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence            11 1122334456688999999999999999999999876

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=1.2e-33  Score=275.25  Aligned_cols=221  Identities=23%  Similarity=0.333  Sum_probs=165.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.|||++.  +|+.||||++.         +-..+|+.+|++++|+|+|.|+.+|.. .+.++||+||++.--|. -|..
T Consensus        16 GvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrr-krklhLVFE~~dhTvL~-eLe~   93 (396)
T KOG0593|consen   16 GVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRR-KRKLHLVFEYCDHTVLH-ELER   93 (396)
T ss_pred             eEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHh-cceeEEEeeecchHHHH-HHHh
Confidence            57999887  79999999985         236789999999999999999999875 45899999999874444 4443


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--------  483 (615)
                      ...         .++.....+++.|++.|+.|+|+++   +|||||||+|||+..++.+||+|||+|+.+..        
T Consensus        94 ~p~---------G~~~~~vk~~l~Q~l~ai~~cHk~n---~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pgd~YTDY  161 (396)
T KOG0593|consen   94 YPN---------GVPSELVKKYLYQLLKAIHFCHKNN---CIHRDIKPENILITQNGVVKLCDFGFARTLSAPGDNYTDY  161 (396)
T ss_pred             ccC---------CCCHHHHHHHHHHHHHHhhhhhhcC---eecccCChhheEEecCCcEEeccchhhHhhcCCcchhhhh
Confidence            332         2888899999999999999999998   99999999999999999999999999987641        


Q ss_pred             ----------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHH-H------HHHhhh
Q 047629          484 ----------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKR-E------ERLRNW  540 (615)
Q Consensus       484 ----------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~-~------~~~~~~  540 (615)
                                      .+.+.+||||.||++.||++|.+-|.+..+-+...+..   ..+..--.+ .      +.+..+
T Consensus       162 VATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~---ktLG~L~prhq~iF~~N~~F~Gv  238 (396)
T KOG0593|consen  162 VATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIR---KTLGNLIPRHQSIFSSNPFFHGV  238 (396)
T ss_pred             hhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHH---HHHcccCHHHHHHhccCCceeee
Confidence                            25578999999999999999998887765543333221   111100000 0      001111


Q ss_pred             cCCc------CCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          541 MDPN------LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       541 ~dp~------l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .=|.      +...||. ...-++++++.|++.||.+|++-+|++..
T Consensus       239 ~lP~~~~~epLe~k~p~-~s~~~ld~~k~cL~~dP~~R~sc~qll~H  284 (396)
T KOG0593|consen  239 RLPEPEHPEPLERKYPK-ISNVLLDLLKKCLKMDPDDRLSCEQLLHH  284 (396)
T ss_pred             ecCCCCCccchhhhccc-chHHHHHHHHHHhcCCccccccHHHHhcC
Confidence            1111      1222332 23368999999999999999999998763

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-33  Score=289.87  Aligned_cols=204  Identities=25%  Similarity=0.369  Sum_probs=168.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      ..||+++-  .++.+|||++.+.          +..|-++|.+| +||.|++|+--+.+. ..+|+|+||++||+|.++|
T Consensus        87 StV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~-~sLYFvLe~A~nGdll~~i  165 (604)
T KOG0592|consen   87 STVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDE-ESLYFVLEYAPNGDLLDLI  165 (604)
T ss_pred             eeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecc-cceEEEEEecCCCcHHHHH
Confidence            37999987  7899999999754          45799999999 899999999888764 4899999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------  483 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------  483 (615)
                      +..+.          |+......++.+|+.||+|||+++   ||||||||+|||||++|++||+|||-|+.+..      
T Consensus       166 ~K~Gs----------fde~caR~YAAeIldAleylH~~G---IIHRDlKPENILLd~dmhikITDFGsAK~l~~~~~~~~  232 (604)
T KOG0592|consen  166 KKYGS----------FDETCARFYAAEILDALEYLHSNG---IIHRDLKPENILLDKDGHIKITDFGSAKILSPSQKSQE  232 (604)
T ss_pred             HHhCc----------chHHHHHHHHHHHHHHHHHHHhcC---ceeccCChhheeEcCCCcEEEeeccccccCChhhcccc
Confidence            87653          888999999999999999999999   99999999999999999999999999976521      


Q ss_pred             ------------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHH
Q 047629          484 ------------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKR  533 (615)
Q Consensus       484 ------------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~  533 (615)
                                                    ..++.+|+|+|||+||+|+.|++||....+      +..+...       
T Consensus       233 ~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~Ne------yliFqkI-------  299 (604)
T KOG0592|consen  233 NPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANE------YLIFQKI-------  299 (604)
T ss_pred             CccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccH------HHHHHHH-------
Confidence                                          134578999999999999999999976442      1111111       


Q ss_pred             HHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          534 EERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       534 ~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                             ++  +.-++|......+.+|++..+..||.+|++..||-++.
T Consensus       300 -------~~--l~y~fp~~fp~~a~dLv~KLLv~dp~~Rlt~~qIk~Hp  339 (604)
T KOG0592|consen  300 -------QA--LDYEFPEGFPEDARDLIKKLLVRDPSDRLTSQQIKAHP  339 (604)
T ss_pred             -------HH--hcccCCCCCCHHHHHHHHHHHccCccccccHHHHhhCc
Confidence                   11  12234445556688999999999999999999988753

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-33  Score=293.72  Aligned_cols=211  Identities=27%  Similarity=0.408  Sum_probs=179.4

Q ss_pred             ceEEEEEEC----C--eEEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATID----G--KVLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~~----g--~~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||+|++.    |  -.||||..+.        .|..|..+|++++|||||+|+|+|.+  ...|+|||.++-|.|.+|
T Consensus       403 GdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e--~P~WivmEL~~~GELr~y  480 (974)
T KOG4257|consen  403 GDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVE--QPMWIVMELAPLGELREY  480 (974)
T ss_pred             cceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeec--cceeEEEecccchhHHHH
Confidence            689999983    2  3589998873        58999999999999999999999975  368999999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC----
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND----  484 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~----  484 (615)
                      |..+..         .|+...+..++.||..+|.|||+..   +|||||.++|||+...-.+|++||||+|...++    
T Consensus       481 Lq~nk~---------sL~l~tL~ly~~Qi~talaYLeSkr---fVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yYk  548 (974)
T KOG4257|consen  481 LQQNKD---------SLPLRTLTLYCYQICTALAYLESKR---FVHRDIAARNILVSSPQCVKLADFGLSRYLEDDAYYK  548 (974)
T ss_pred             HHhccc---------cchHHHHHHHHHHHHHHHHHHHhhc---hhhhhhhhhheeecCcceeeecccchhhhccccchhh
Confidence            987764         3899999999999999999999998   999999999999999999999999999865332    


Q ss_pred             --------------------CCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCC
Q 047629          485 --------------------VMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDP  543 (615)
Q Consensus       485 --------------------~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp  543 (615)
                                          +++++|||-|||.+||+++ |.+||....+.+...                     .+..
T Consensus       549 aS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsDVI~---------------------~iEn  607 (974)
T KOG4257|consen  549 ASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSDVIG---------------------HIEN  607 (974)
T ss_pred             ccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccccceEE---------------------EecC
Confidence                                5789999999999999998 999998766543210                     1111


Q ss_pred             cCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          544 NLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       544 ~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      .-+-..|..|+..+..|+..||..+|.+||.+.|+...|+.+.+.
T Consensus       608 GeRlP~P~nCPp~LYslmskcWayeP~kRPrftei~~~lsdv~qe  652 (974)
T KOG4257|consen  608 GERLPCPPNCPPALYSLMSKCWAYEPSKRPRFTEIKAILSDVLQE  652 (974)
T ss_pred             CCCCCCCCCCChHHHHHHHHHhccCcccCCcHHHHHHHHHHHHHH
Confidence            112245778888899999999999999999999999999988764

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=3.5e-32  Score=275.90  Aligned_cols=210  Identities=25%  Similarity=0.409  Sum_probs=169.2

Q ss_pred             ceEEEEEE--CCeEEEEEEccH------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      +.||+|..  .++.||+|.++.      ++.+|++++++++|+||+++++++.. ++..+++|||+++|+|.+++.....
T Consensus        20 ~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~~   98 (263)
T cd05052          20 GEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR-EPPFYIITEFMTYGNLLDYLRECNR   98 (263)
T ss_pred             ceEEEEEEecCCceEEEEEecCCchHHHHHHHHHHHHHhCCCCChhheEEEEcC-CCCcEEEEEeCCCCcHHHHHHhCCC
Confidence            58999987  588999998863      47789999999999999999999875 4478999999999999999975432


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------------  482 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------------  482 (615)
                      .        .+++..++.++.|++.||+|||+.+   ++||||||+||++++++.+||+|||+++...            
T Consensus        99 ~--------~l~~~~~~~~~~ql~~~l~~lH~~~---i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~~~  167 (263)
T cd05052          99 Q--------EVNAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF  167 (263)
T ss_pred             C--------CCCHHHHHHHHHHHHHHHHHHHhCC---EeecccCcceEEEcCCCcEEeCCCccccccccceeeccCCCCC
Confidence            1        3899999999999999999999987   9999999999999999999999999875432            


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                  ...+.++||||||+++|||++ |..|+......   ..+.              .+..    ......
T Consensus       168 ~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~---~~~~--------------~~~~----~~~~~~  226 (263)
T cd05052         168 PIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS---QVYE--------------LLEK----GYRMER  226 (263)
T ss_pred             ccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHH---HHHH--------------HHHC----CCCCCC
Confidence                        113457999999999999998 88888653311   1111              0111    111122


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      +...+..+.+++.+||+.||++||++.|+++.|+.+
T Consensus       227 ~~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         227 PEGCPPKVYELMRACWQWNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             CCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence            334456689999999999999999999999999764

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=2.5e-32  Score=277.74  Aligned_cols=209  Identities=22%  Similarity=0.377  Sum_probs=166.9

Q ss_pred             ceEEEEEE-----CCeEEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI-----DGKVLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~-----~g~~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|.+     .+..||+|.++.        .+.+|+.++.+++||||++++|++... +..++||||+++|+|.+++
T Consensus        19 g~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l   97 (266)
T cd05064          19 GELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRG-NTMMIVTEYMSNGALDSFL   97 (266)
T ss_pred             CeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecC-CCcEEEEEeCCCCcHHHHH
Confidence            58999976     257899998762        467899999999999999999998754 4799999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      .....         .++|.+++.++.|++.||+|||+++   ++||||||+|||++.++.+|++|||.+....       
T Consensus        98 ~~~~~---------~l~~~~~~~~~~~i~~al~~lH~~~---iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~~~~~  165 (266)
T cd05064          98 RKHEG---------QLVAGQLMGMLPGLASGMKYLSEMG---YVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAIYTT  165 (266)
T ss_pred             HhCCC---------CCCHHHHHHHHHHHHHHHHHHHHCC---EeeccccHhhEEEcCCCcEEECCCcccccccccchhcc
Confidence            76432         3899999999999999999999998   9999999999999999999999999764321       


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCc
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPN  544 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~  544 (615)
                                       ..++.++|||||||++||+++ |+.|+......+   ...              .+.+...+ 
T Consensus       166 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~~---~~~--------------~~~~~~~~-  227 (266)
T cd05064         166 MSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQD---VIK--------------AVEDGFRL-  227 (266)
T ss_pred             cCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCHHH---HHH--------------HHHCCCCC-
Confidence                             124568999999999999775 999987543211   000              11111111 


Q ss_pred             CCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          545 LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       545 l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                         ..+...+..+.+++..||+.+|.+||+++||.+.|.++
T Consensus       228 ---~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         228 ---PAPRNCPNLLHQLMLDCWQKERGERPRFSQIHSILSKM  265 (266)
T ss_pred             ---CCCCCCCHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence               12334556789999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-33  Score=284.88  Aligned_cols=211  Identities=28%  Similarity=0.394  Sum_probs=168.5

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH-------HHHHHHHHHhcCCCCcccEEEEEEcCCC-cEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIKED-------VTEELRILQRINHANLVKLMGVSSDSQG-NRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~-------~~~Ei~~l~~l~H~niv~l~g~~~~~~~-~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||.+..  +|+..|||.+...       +.+|+.+|++++|||||+.+|.....++ .+++.|||+++|+|.+++.+.
T Consensus        31 G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mEy~~~GsL~~~~~~~  110 (313)
T KOG0198|consen   31 GSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFMEYAPGGSLSDLIKRY  110 (313)
T ss_pred             eEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeeeccCCCcHHHHHHHc
Confidence            58999988  4899999998643       6899999999999999999997443343 588999999999999999876


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC-CCcEEEeecCCCCCCCC--------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS-RFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-~~~~kl~DFGla~~~~~--------  483 (615)
                      ..         .|+...+..+..||++||.|||+++   |+||||||+|||++. ++.+||+|||+++....        
T Consensus       111 g~---------~l~E~~v~~ytr~iL~GL~ylHs~g---~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~  178 (313)
T KOG0198|consen  111 GG---------KLPEPLVRRYTRQILEGLAYLHSKG---IVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGTKSDSE  178 (313)
T ss_pred             CC---------CCCHHHHHHHHHHHHHHHHHHHhCC---EeccCcccceEEEeCCCCeEEeccCcccccccccccccccc
Confidence            53         2899999999999999999999998   999999999999999 79999999998864321        


Q ss_pred             -----------------CCC--CcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCc
Q 047629          484 -----------------DVM--PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPN  544 (615)
Q Consensus       484 -----------------~~~--~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~  544 (615)
                                       ...  .++||||+||++.||+||+.||.......        ...          +...... 
T Consensus       179 ~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~~~~--------~~~----------~~ig~~~-  239 (313)
T KOG0198|consen  179 LSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEFFEEA--------EAL----------LLIGRED-  239 (313)
T ss_pred             ccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhhcchH--------HHH----------HHHhccC-
Confidence                             011  38999999999999999999987531100        000          0011111 


Q ss_pred             CCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHh
Q 047629          545 LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSV  584 (615)
Q Consensus       545 l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~  584 (615)
                      ....+|........+++..|++.||++|||+.|+++....
T Consensus       240 ~~P~ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~hpf~  279 (313)
T KOG0198|consen  240 SLPEIPDSLSDEAKDFLRKCFKRDPEKRPTAEELLEHPFL  279 (313)
T ss_pred             CCCCCCcccCHHHHHHHHHHhhcCcccCcCHHHHhhChhh
Confidence            1114455566678999999999999999999999997643

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-33  Score=300.56  Aligned_cols=211  Identities=25%  Similarity=0.396  Sum_probs=176.9

Q ss_pred             ceEEEEEE--CC----eEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DG----KVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g----~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||||.|  .|    -+||||++.        .++.+|.-+|.+++|+|++||+|+|..+  .+.||++|||.|+|.+|
T Consensus       710 GtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s--~~qlvtq~mP~G~LlDy  787 (1177)
T KOG1025|consen  710 GTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLS--TLQLVTQLMPLGCLLDY  787 (1177)
T ss_pred             eeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccc--hHHHHHHhcccchHHHH
Confidence            69999998  44    468999885        3588999999999999999999999753  48899999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-----
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-----  483 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-----  483 (615)
                      ++.++.         .+.-...+.|..|||+||.|||++.   ++||||.++|+|+.+-..+||.|||+++....     
T Consensus       788 vr~hr~---------~igsq~lLnw~~QIAkgM~YLe~qr---lVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey  855 (1177)
T KOG1025|consen  788 VREHRD---------NIGSQDLLNWCYQIAKGMKYLEEQR---LVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEY  855 (1177)
T ss_pred             HHHhhc---------cccHHHHHHHHHHHHHHHHHHHhcc---hhhhhhhhhheeecCCCeEEEEecchhhccCcccccc
Confidence            998764         3788899999999999999999997   99999999999999999999999999987632     


Q ss_pred             --------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          484 --------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       484 --------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                          .++.++|||||||++||++| |.+|++...-       +++...+              .
T Consensus       856 ~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~-------~eI~dll--------------e  914 (1177)
T KOG1025|consen  856 SAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPA-------EEIPDLL--------------E  914 (1177)
T ss_pred             cccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCH-------HHhhHHH--------------h
Confidence                                25779999999999999999 9999886542       1122222              1


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      ...+-..|.-+...+..++.+||..|+..||+++++...+.++...
T Consensus       915 ~geRLsqPpiCtiDVy~~mvkCwmid~~~rp~fkel~~~fs~~ard  960 (1177)
T KOG1025|consen  915 KGERLSQPPICTIDVYMVMVKCWMIDADSRPTFKELAEEFSRMARD  960 (1177)
T ss_pred             ccccCCCCCCccHHHHHHHHHHhccCcccCccHHHHHHHHHHHhcC
Confidence            1112245777888899999999999999999999999988766543

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=2.6e-32  Score=284.88  Aligned_cols=211  Identities=21%  Similarity=0.408  Sum_probs=166.9

Q ss_pred             ceEEEEEE--CCe----EEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGK----VLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~----~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||+|.+  +|+    .||+|.++        +++.+|+.+++.++|+||++++|+|..  ...++++||+++|+|.++
T Consensus        21 g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~--~~~~~v~e~~~~g~l~~~   98 (316)
T cd05108          21 GTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT--STVQLITQLMPFGCLLDY   98 (316)
T ss_pred             ceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcC--CCceeeeecCCCCCHHHH
Confidence            58999986  444    48999975        247789999999999999999999874  357899999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      +.....         .+++..++.++.|++.||+|||+++   |+||||||+|||+++++.+||+|||+++...      
T Consensus        99 l~~~~~---------~~~~~~~~~~~~qi~~~L~~LH~~~---iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~  166 (316)
T cd05108          99 VREHKD---------NIGSQYLLNWCVQIAKGMNYLEERR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEY  166 (316)
T ss_pred             HHhccc---------cCCHHHHHHHHHHHHHHHHHHHhcC---eeccccchhheEecCCCcEEEccccccccccCCCcce
Confidence            986542         3889999999999999999999998   9999999999999999999999999986431      


Q ss_pred             -------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          483 -------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       483 -------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                         ..++.++|||||||++|||++ |+.|+......+       +...          +.... 
T Consensus       167 ~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~~-------~~~~----------~~~~~-  228 (316)
T cd05108         167 HAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE-------ISSI----------LEKGE-  228 (316)
T ss_pred             eccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHH-------HHHH----------HhCCC-
Confidence                               113568999999999999998 999986432110       1111          00000 


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                       .+  ..+..+...+.+++..||+.+|.+||++.|++..|..+...
T Consensus       229 -~~--~~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~~  271 (316)
T cd05108         229 -RL--PQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD  271 (316)
T ss_pred             -CC--CCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHcC
Confidence             01  11223345678999999999999999999999999877654

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=2.7e-32  Score=291.85  Aligned_cols=219  Identities=25%  Similarity=0.394  Sum_probs=166.1

Q ss_pred             ceEEEEEE-------CCeEEEEEEccH--------HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI-------DGKVLAVKKIKE--------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~-------~g~~vAvK~~~~--------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      |.||++..       .+..||||+++.        .+.+|+.+|..+ +||||++++|+|.+. +..++||||+++|+|.
T Consensus        49 G~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~-~~~~lv~E~~~~g~L~  127 (375)
T cd05104          49 GKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVG-GPTLVITEYCCYGDLL  127 (375)
T ss_pred             ceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccC-CcceeeehhccCCcHH
Confidence            58999874       356899999862        367899999999 899999999998754 4789999999999999


Q ss_pred             HhhccCCCCCCC-----------------------------------------------------------------CCc
Q 047629          407 KWLHPKSKSSSS-----------------------------------------------------------------SGS  421 (615)
Q Consensus       407 ~~L~~~~~~~~~-----------------------------------------------------------------~~~  421 (615)
                      +++.........                                                                 ...
T Consensus       128 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (375)
T cd05104         128 NFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSYIDQDVTSEILEED  207 (375)
T ss_pred             HHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccceecccccHHHHHhcc
Confidence            999753210000                                                                 000


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------------------
Q 047629          422 VIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------------------  482 (615)
Q Consensus       422 ~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------------------  482 (615)
                      ...++|..+++++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+++...                   
T Consensus       208 ~~~l~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~a  284 (375)
T cd05104         208 ELALDTEDLLSFSYQVAKGMSFLASKN---CIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMA  284 (375)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCchhhEEEECCCcEEEecCccceeccCcccccccCCCCCCcceeC
Confidence            124889999999999999999999987   9999999999999999999999999985321                   


Q ss_pred             ------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHH
Q 047629          483 ------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGAL  555 (615)
Q Consensus       483 ------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~  555 (615)
                            ..++.++|||||||++|||++ |+.|+........  .+..    +          .+    ......+.....
T Consensus       285 PE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~~--~~~~----~----------~~----~~~~~~~~~~~~  344 (375)
T cd05104         285 PESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDSK--FYKM----I----------KE----GYRMLSPECAPS  344 (375)
T ss_pred             hhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchHH--HHHH----H----------Hh----CccCCCCCCCCH
Confidence                  124568999999999999998 8888865432111  1111    0          00    000011122234


Q ss_pred             HHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          556 SLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       556 ~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      ++.+|+.+||+.||++||+|+||++.|++.
T Consensus       345 ~l~~li~~cl~~dP~~RPs~~eil~~l~~~  374 (375)
T cd05104         345 EMYDIMKSCWDADPLKRPTFKQIVQLIEQQ  374 (375)
T ss_pred             HHHHHHHHHccCChhHCcCHHHHHHHHHhh
Confidence            688999999999999999999999999853

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=8.2e-32  Score=272.78  Aligned_cols=210  Identities=24%  Similarity=0.405  Sum_probs=168.3

Q ss_pred             ceEEEEEE-CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      +.||+|.. +++.||+|.++      +++.+|++++++++|+||+++.+++... +..+++|||+++|+|.+++..... 
T Consensus        20 ~~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~~~~-   97 (261)
T cd05068          20 GEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTLE-EPIYIVTELMKYGSLLEYLQGGAG-   97 (261)
T ss_pred             ccEEEEEecCCeEEEEEeeCCCcccHHHHHHHHHHHHHCCCCCccceeEEEecC-CCeeeeeecccCCcHHHHHhccCC-
Confidence            48999987 56789999886      3578899999999999999999988754 478999999999999999976432 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------------  482 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------------  482 (615)
                             ..++|.++..++.|++.||.|||+.+   ++||||||+||++++++.+||+|||+++...             
T Consensus        98 -------~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~  167 (261)
T cd05068          98 -------RALKLPQLIDMAAQVASGMAYLEAQN---YIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFP  167 (261)
T ss_pred             -------CCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCCcceEEEcCCCCEEECCcceEEEccCCcccccCCCcCc
Confidence                   13899999999999999999999988   9999999999999999999999999875321             


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                 ...+.++||||||+++|||++ |+.|+.......   ...              .+..    ......+
T Consensus       168 ~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~---~~~--------------~~~~----~~~~~~~  226 (261)
T cd05068         168 IKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAE---VLQ--------------QVDQ----GYRMPCP  226 (261)
T ss_pred             eeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHH---HHH--------------HHHc----CCCCCCC
Confidence                       113558999999999999999 888886533211   110              0111    0011122


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      ......+.+++.+|++.+|.+||+|.++++.|+.+
T Consensus       227 ~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~~  261 (261)
T cd05068         227 PGCPKELYDIMLDCWKEDPDDRPTFETLQWKLEDF  261 (261)
T ss_pred             CcCCHHHHHHHHHHhhcCcccCCCHHHHHHHHhcC
Confidence            33456789999999999999999999999999753

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=8.5e-32  Score=271.84  Aligned_cols=207  Identities=25%  Similarity=0.430  Sum_probs=165.0

Q ss_pred             ceEEEEEE-CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      +.||++.+ ++..+|+|.++      .++.+|++++++++|+||+++++++.+. ...++||||+++|+|.++++.... 
T Consensus        18 ~~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~iv~e~~~~~~L~~~~~~~~~-   95 (256)
T cd05114          18 GVVHLGKWRAQIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQ-KPLYIVTEFMENGCLLNYLRQRQG-   95 (256)
T ss_pred             ceEEEEEeccCceEEEEecccCCccHHHHHHHHHHHHHCCCCCceeEEEEEccC-CCEEEEEEcCCCCcHHHHHHhCcc-
Confidence            48999988 56689999875      3578899999999999999999998754 479999999999999999975432 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------------  482 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------------  482 (615)
                              .++|..+..++.|++.||+|||+++   ++||||||+||++++++.+|++|||+++...             
T Consensus        96 --------~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~  164 (256)
T cd05114          96 --------KLSKDMLLSMCQDVCEGMEYLERNS---FIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFP  164 (256)
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHCC---ccccccCcceEEEcCCCeEEECCCCCccccCCCceeccCCCCCc
Confidence                    2899999999999999999999998   9999999999999999999999999885321             


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                 ...+.++||||||+++|||++ |+.|+......+.   ...              +.+...+    ..+
T Consensus       165 ~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~~~---~~~--------------i~~~~~~----~~~  223 (256)
T cd05114         165 VKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEV---VEM--------------ISRGFRL----YRP  223 (256)
T ss_pred             hhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCHHHH---HHH--------------HHCCCCC----CCC
Confidence                       113568999999999999999 8889865432111   100              0000000    112


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      ......+.+++.+||+.+|.+||+|.|+++.|.
T Consensus       224 ~~~~~~~~~li~~c~~~~p~~Rps~~~l~~~l~  256 (256)
T cd05114         224 KLASMTVYEVMYSCWHEKPEGRPTFAELLRAIT  256 (256)
T ss_pred             CCCCHHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence            223346899999999999999999999998873

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-32  Score=277.77  Aligned_cols=215  Identities=21%  Similarity=0.306  Sum_probs=167.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      ..||+|..  .++.||||++.        ..+.+|+..|+.++||||+++...|... ..+|+||.||..||+.+.++..
T Consensus        40 a~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~-~~LWvVmpfMa~GS~ldIik~~  118 (516)
T KOG0582|consen   40 AVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVD-SELWVVMPFMAGGSLLDIIKTY  118 (516)
T ss_pred             eEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEec-ceeEEeehhhcCCcHHHHHHHH
Confidence            47999997  78999999996        3467899999999999999999887754 4899999999999999999875


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC-----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA-----------  481 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~-----------  481 (615)
                      -..        .+.+..+..|.+++++||.|||.++   .||||||+.|||||.+|.+||+|||.+..+           
T Consensus       119 ~~~--------Gl~E~~Ia~iLre~LkaL~YLH~~G---~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~~~rf  187 (516)
T KOG0582|consen  119 YPD--------GLEEASIATILREVLKALDYLHQNG---HIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQVTRF  187 (516)
T ss_pred             ccc--------cccHHHHHHHHHHHHHHHHHHHhcC---ceecccccccEEEcCCCcEEEcCceeeeeecccCceeeEee
Confidence            442        3899999999999999999999998   999999999999999999999999876322           


Q ss_pred             ------------------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCC
Q 047629          482 ------------------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDP  543 (615)
Q Consensus       482 ------------------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp  543 (615)
                                        ...|..|+||||||++..||.+|..||.....-...  ...+...          .....-.
T Consensus       188 ~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkvL--l~tLqn~----------pp~~~t~  255 (516)
T KOG0582|consen  188 NTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPMKVL--LLTLQND----------PPTLLTS  255 (516)
T ss_pred             ccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChHHHH--HHHhcCC----------CCCcccc
Confidence                              112567999999999999999999999876542211  1101000          0000000


Q ss_pred             cCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          544 NLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       544 ~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+..+........+.+++..|+..||.+|||++++++.
T Consensus       256 ~~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlkh  293 (516)
T KOG0582|consen  256 GLDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLKH  293 (516)
T ss_pred             cCChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhcc
Confidence            11111112233478999999999999999999999874

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=1.2e-31  Score=270.83  Aligned_cols=211  Identities=26%  Similarity=0.429  Sum_probs=170.0

Q ss_pred             ceEEEEEECCeEEEEEEccH-----HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCC
Q 047629          343 KSVYRATIDGKVLAVKKIKE-----DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSS  417 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~~-----~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~  417 (615)
                      +.||++...|+.+|+|.++.     .+.+|+.++++++|+|++++++++...++..++++||+++|+|.+++......  
T Consensus        20 ~~v~~~~~~~~~~~~k~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~--   97 (256)
T cd05082          20 GDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRS--   97 (256)
T ss_pred             CeEEEEEEcCCcEEEEEeCCCchHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECCCCCcHHHHHHhcCCC--
Confidence            48999999999999998863     47789999999999999999998765555789999999999999999764431  


Q ss_pred             CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------------
Q 047629          418 SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------------  482 (615)
Q Consensus       418 ~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------------  482 (615)
                            .++|..++.++.|++.||+|||+++   ++||||||+||++++++.+|++|||+++...               
T Consensus        98 ------~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aP  168 (256)
T cd05082          98 ------VLGGDCLLKFSLDVCEAMEYLEANN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAP  168 (256)
T ss_pred             ------CCCHHHHHHHHHHHHHHHHHHHhCC---EeccccchheEEEcCCCcEEecCCccceeccccCCCCccceeecCH
Confidence                  3889999999999999999999998   9999999999999999999999999986431               


Q ss_pred             -----CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHH
Q 047629          483 -----NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALS  556 (615)
Q Consensus       483 -----~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~  556 (615)
                           ...+.++||||||+++|||++ |+.|+......   .    +..          .+..-..    ...+...+..
T Consensus       169 E~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~~---~----~~~----------~~~~~~~----~~~~~~~~~~  227 (256)
T cd05082         169 EALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK---D----VVP----------RVEKGYK----MDAPDGCPPV  227 (256)
T ss_pred             HHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCHH---H----HHH----------HHhcCCC----CCCCCCCCHH
Confidence                 124568999999999999998 88888643210   0    000          0111011    1222334556


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          557 LATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       557 l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      +.+++.+||+.+|++|||+.++++.|+.+
T Consensus       228 ~~~li~~~l~~~p~~Rpt~~~l~~~l~~~  256 (256)
T cd05082         228 VYDVMKQCWHLDAATRPSFLQLREQLEHI  256 (256)
T ss_pred             HHHHHHHHhcCChhhCcCHHHHHHHHhcC
Confidence            88999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.5e-33  Score=270.51  Aligned_cols=213  Identities=23%  Similarity=0.366  Sum_probs=168.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCc-EEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~-~~lV~E~~~~GsL~~~L~  410 (615)
                      |.|||+..  +|..+|.|.++         .+...|+.+|++++|||||+++++....+.+ ++||||||..|+|.+.++
T Consensus        33 g~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlnivmE~c~~GDLsqmIk  112 (375)
T KOG0591|consen   33 GEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIVMELCDAGDLSQMIK  112 (375)
T ss_pred             hheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHHHHhhcccCHHHHHH
Confidence            58999885  99999999885         3567899999999999999999965545545 899999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCC--eEecCCCCCceeeCCCCcEEEeecCCCCCCCC-----
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPS--IVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-----  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~--ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-----  483 (615)
                      .-+...      ..+++..++++..|++.||.++|+.. |+  |+||||||.||+|+.++.+||+||||++.+..     
T Consensus       113 ~~K~qk------r~ipE~~Vwk~f~QL~~AL~~cH~~~-~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s~~tfA  185 (375)
T KOG0591|consen  113 HFKKQK------RLIPEKTVWKYFVQLCRALYHCHSKI-PRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLSSKTTFA  185 (375)
T ss_pred             HHHhcc------ccCchHHHHHHHHHHHHHHHHHhccc-cccceeeccCcchheEEcCCCceeeccchhHhHhcchhHHH
Confidence            654322      24899999999999999999999942 33  99999999999999999999999999976532     


Q ss_pred             ------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          484 ------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       484 ------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                        .+..|+||||+||++|||..=+.||....   ...+.              .++..---|.+
T Consensus       186 ~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n---~~~L~--------------~KI~qgd~~~~  248 (375)
T KOG0591|consen  186 HSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDN---LLSLC--------------KKIEQGDYPPL  248 (375)
T ss_pred             HhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCccccc---HHHHH--------------HHHHcCCCCCC
Confidence                              36679999999999999999999997642   11111              12222111112


Q ss_pred             CCCCC-hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          546 ESFYP-IDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       546 ~~~~~-~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                          | ......+..|+..|+..||+.||+...+++.+.
T Consensus       249 ----p~~~YS~~l~~li~~ci~vd~~~RP~t~~~v~di~  283 (375)
T KOG0591|consen  249 ----PDEHYSTDLRELINMCIAVDPEQRPDTVPYVQDIQ  283 (375)
T ss_pred             ----cHHHhhhHHHHHHHHHccCCcccCCCcchHHHHHH
Confidence                2 345567899999999999999999655555544

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=3.4e-32  Score=261.06  Aligned_cols=221  Identities=24%  Similarity=0.335  Sum_probs=171.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||+|..  +|+.||||+++         ....+||+.|+.++|+||+.|++++... +.+-||+|||+. +|...++.
T Consensus        16 gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~-~~l~lVfEfm~t-dLe~vIkd   93 (318)
T KOG0659|consen   16 GVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHK-SNLSLVFEFMPT-DLEVVIKD   93 (318)
T ss_pred             EEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCC-CceEEEEEeccc-cHHHHhcc
Confidence            47999987  79999999996         2467899999999999999999998754 479999999986 99999987


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--------  483 (615)
                      ...         .|+-.++..++.++.+||+|+|+++   |+||||||.|+|++.++.+||+|||+|+....        
T Consensus        94 ~~i---------~l~pa~iK~y~~m~LkGl~y~H~~~---IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~~~~  161 (318)
T KOG0659|consen   94 KNI---------ILSPADIKSYMLMTLKGLAYCHSKW---ILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRIQTHQ  161 (318)
T ss_pred             ccc---------ccCHHHHHHHHHHHHHHHHHHHhhh---hhcccCCccceEEcCCCcEEeecccchhccCCCCcccccc
Confidence            653         5999999999999999999999998   99999999999999999999999999987532        


Q ss_pred             ----------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHH---HH-------HHHH
Q 047629          484 ----------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE---KR-------EERL  537 (615)
Q Consensus       484 ----------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~---~~-------~~~~  537 (615)
                                      .++..+||||.|||+.||+-|.+-+.+..+-+..   ..+.+.+....   +.       -.++
T Consensus       162 V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL---~~If~~LGTP~~~~WP~~~~lpdY~~~  238 (318)
T KOG0659|consen  162 VVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQL---SKIFRALGTPTPDQWPEMTSLPDYVKI  238 (318)
T ss_pred             eeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHH---HHHHHHcCCCCcccCccccccccHHHH
Confidence                            2567899999999999999998777665443322   12222221110   00       0111


Q ss_pred             hhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          538 RNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       538 ~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ...=.|.+..-+ ..+....++|+..++..||.+|.+++|++++
T Consensus       239 ~~~P~~~~~~lf-~aas~d~ldLl~~m~~ynP~~Rita~qaL~~  281 (318)
T KOG0659|consen  239 QQFPKPPLNNLF-PAASSDALDLLSKMLTYNPKKRITASQALKH  281 (318)
T ss_pred             hcCCCCcccccc-ccccHHHHHHHHhhhccCchhcccHHHHhcc
Confidence            111112222222 3344456999999999999999999999886

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=1.1e-31  Score=275.13  Aligned_cols=217  Identities=25%  Similarity=0.446  Sum_probs=169.2

Q ss_pred             ceEEEEEEC--C-----eEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATID--G-----KVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~~--g-----~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      +.||+|...  +     ..||+|.++        ..+.+|+.++.+++|+||+++++++.+. +..+++|||+++|+|.+
T Consensus        19 g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~-~~~~~~~e~~~~~~L~~   97 (283)
T cd05048          19 GKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKE-QPTCMLFEYLAHGDLHE   97 (283)
T ss_pred             CcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCC-CceEEEEecCCCCcHHH
Confidence            589999862  2     579999885        2477899999999999999999998754 47899999999999999


Q ss_pred             hhccCCCCCCC------CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC
Q 047629          408 WLHPKSKSSSS------SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA  481 (615)
Q Consensus       408 ~L~~~~~~~~~------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  481 (615)
                      ++.........      ......+++..++.++.|++.||.|||+.+   ++||||||+||++++++.+||+|||+++..
T Consensus        98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~---i~H~dlkp~Nil~~~~~~~~L~dfg~~~~~  174 (283)
T cd05048          98 FLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHH---FVHRDLAARNCLVGEGLTVKISDFGLSRDI  174 (283)
T ss_pred             HHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccccccceEEEcCCCcEEECCCcceeec
Confidence            99764321110      000124889999999999999999999998   999999999999999999999999988542


Q ss_pred             C-------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHH
Q 047629          482 T-------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREE  535 (615)
Q Consensus       482 ~-------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~  535 (615)
                      .                         ..++.++|||||||++|||++ |+.|+......+       +..          
T Consensus       175 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~~-------~~~----------  237 (283)
T cd05048         175 YSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQE-------VIE----------  237 (283)
T ss_pred             cccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHHH-------HHH----------
Confidence            1                         124568999999999999998 999987543211       000          


Q ss_pred             HHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHh
Q 047629          536 RLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSV  584 (615)
Q Consensus       536 ~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~  584 (615)
                      .+.    .......+...+.++.+|+.+||+.||.+||+++||+++|+.
T Consensus       238 ~i~----~~~~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05048         238 MIR----SRQLLPCPEDCPARVYALMIECWNEIPARRPRFKDIHTRLRS  282 (283)
T ss_pred             HHH----cCCcCCCcccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhc
Confidence            011    111112344556778999999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=1.4e-31  Score=277.72  Aligned_cols=223  Identities=26%  Similarity=0.436  Sum_probs=165.1

Q ss_pred             ceEEEEEE------------------CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEE
Q 047629          343 KSVYRATI------------------DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV  396 (615)
Q Consensus       343 ~~Vy~~~~------------------~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV  396 (615)
                      |.||++.+                  ++..||+|.++        .++.+|++++.+++|+||+++++++.+. ...++|
T Consensus        19 g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-~~~~lv   97 (304)
T cd05096          19 GEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRLLGVCVDE-DPLCMI   97 (304)
T ss_pred             eEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEecC-CceEEE
Confidence            47998875                  23479999875        2577899999999999999999998764 478999


Q ss_pred             EeecCCCCHHHhhccCCCCCCC---------CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC
Q 047629          397 YEYAENGSLDKWLHPKSKSSSS---------SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR  467 (615)
Q Consensus       397 ~E~~~~GsL~~~L~~~~~~~~~---------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~  467 (615)
                      |||+++|+|.+++.........         ......++|.++++++.|++.||.|||+++   |+||||||+|||++.+
T Consensus        98 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~---ivH~dlkp~Nill~~~  174 (304)
T cd05096          98 TEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLN---FVHRDLATRNCLVGEN  174 (304)
T ss_pred             EecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCC---ccccCcchhheEEcCC
Confidence            9999999999998654211100         011124889999999999999999999998   9999999999999999


Q ss_pred             CcEEEeecCCCCCCC-------------------------CCCCCcccchhHHHHHHHHHc--CCCCCCCCCCChhHHHH
Q 047629          468 FKAKIANFSLAAPAT-------------------------NDVMPKFDVFAFGVVLLELLS--GKKATRTTENGKTAVLW  520 (615)
Q Consensus       468 ~~~kl~DFGla~~~~-------------------------~~~~~k~DV~SfGvvl~Ellt--G~~p~~~~~~~~~~~l~  520 (615)
                      +.+||+|||+++...                         ..++.++||||||+++|||++  |..|+......+   ..
T Consensus       175 ~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~---~~  251 (304)
T cd05096         175 LTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGELTDEQ---VI  251 (304)
T ss_pred             ccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCcCCHHH---HH
Confidence            999999999986421                         124568999999999999987  455665433211   11


Q ss_pred             HHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          521 KEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      ..+...+          .... .......+..++..+.+++.+||+.||++||||.||...|+
T Consensus       252 ~~~~~~~----------~~~~-~~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~~~l~  303 (304)
T cd05096         252 ENAGEFF----------RDQG-RQVYLFRPPPCPQGLYELMLQCWSRDCRERPSFSDIHAFLT  303 (304)
T ss_pred             HHHHHHh----------hhcc-ccccccCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHh
Confidence            1111111          0000 00001112334557899999999999999999999998875

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=1.7e-31  Score=270.00  Aligned_cols=207  Identities=26%  Similarity=0.422  Sum_probs=165.6

Q ss_pred             ceEEEEEE----CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI----DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~----~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      +.||+|.+    +++.+|+|+++         +++.+|+.++++++|+||++++|++..  ...++||||+++|+|.+++
T Consensus         9 g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~--~~~~lv~e~~~~~~L~~~l   86 (257)
T cd05116           9 GTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICEA--ESWMLVMELAELGPLNKFL   86 (257)
T ss_pred             cceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcC--CCcEEEEecCCCCcHHHHH
Confidence            47999875    47889999875         247789999999999999999998753  3679999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------  483 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------  483 (615)
                      ....          .+++..+..++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++....      
T Consensus        87 ~~~~----------~~~~~~~~~i~~qi~~al~~lH~~~---i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~  153 (257)
T cd05116          87 QKNK----------HVTEKNITELVHQVSMGMKYLEETN---FVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYK  153 (257)
T ss_pred             HhcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---EeecccchhhEEEcCCCeEEECCCccccccCCCCCeee
Confidence            7543          2889999999999999999999998   99999999999999999999999999854311      


Q ss_pred             --------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          484 --------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       484 --------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                          ..+.++||||||+++|||++ |+.||......+   ...              .+.+   
T Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~---~~~--------------~i~~---  213 (257)
T cd05116         154 AKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNE---VTQ--------------MIES---  213 (257)
T ss_pred             ecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHH---HHH--------------HHHC---
Confidence                                12347999999999999998 999986543211   110              0111   


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                       ......+......+.+++.+||+.||++||++.+|++.|++.
T Consensus       214 -~~~~~~~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~~  255 (257)
T cd05116         214 -GERMECPQRCPPEMYDLMKLCWTYGVDERPGFAVVELRLRNY  255 (257)
T ss_pred             -CCCCCCCCCCCHHHHHHHHHHhccCchhCcCHHHHHHHHhcc
Confidence             111122334456688999999999999999999999999753

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-32  Score=287.38  Aligned_cols=205  Identities=23%  Similarity=0.405  Sum_probs=169.4

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||.+.-  +++.||||++.       +-+.+|+.+|+..+|+|||+++.-+... .++|+|||||++|+|.+.+... 
T Consensus       287 G~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~-deLWVVMEym~ggsLTDvVt~~-  364 (550)
T KOG0578|consen  287 GGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVG-DELWVVMEYMEGGSLTDVVTKT-  364 (550)
T ss_pred             cceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhccc-ceeEEEEeecCCCchhhhhhcc-
Confidence            58998876  78999999995       2367999999999999999999987755 4899999999999999998654 


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN----------  483 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~----------  483 (615)
                                .+++.++..|+++++.||+|||.++   |+|||||.+|||++.++.+||+|||++.....          
T Consensus       365 ----------~~~E~qIA~Icre~l~aL~fLH~~g---IiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~KR~TmVG  431 (550)
T KOG0578|consen  365 ----------RMTEGQIAAICREILQGLKFLHARG---IIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSKRSTMVG  431 (550)
T ss_pred             ----------cccHHHHHHHHHHHHHHHHHHHhcc---eeeeccccceeEeccCCcEEEeeeeeeeccccccCccccccC
Confidence                      3899999999999999999999998   99999999999999999999999999865422          


Q ss_pred             -------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          484 -------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       484 -------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                   .+.+|+||||||++.+||+-|.+||-....  ...++               .+..--.|.+  ..+
T Consensus       432 TPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~P--lrAly---------------LIa~ng~P~l--k~~  492 (550)
T KOG0578|consen  432 TPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENP--LRALY---------------LIATNGTPKL--KNP  492 (550)
T ss_pred             CCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCCh--HHHHH---------------HHhhcCCCCc--CCc
Confidence                         256899999999999999999999875322  11111               1111122333  234


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ......+.++..+|++.|+++||++.|++++
T Consensus       493 ~klS~~~kdFL~~cL~~dv~~RasA~eLL~H  523 (550)
T KOG0578|consen  493 EKLSPELKDFLDRCLVVDVEQRASAKELLEH  523 (550)
T ss_pred             cccCHHHHHHHHHHhhcchhcCCCHHHHhcC
Confidence            4556678999999999999999999999986

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=1.4e-31  Score=270.87  Aligned_cols=210  Identities=23%  Similarity=0.401  Sum_probs=166.8

Q ss_pred             ceEEEEEE-CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      +.||+|.. +++.||+|.++      +.+.+|+.++++++|+||+++++++.+ ++..+++|||+++|+|.++++.....
T Consensus        20 g~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~   98 (261)
T cd05072          20 GEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTK-EEPIYIITEYMAKGSLLDFLKSDEGG   98 (261)
T ss_pred             ceEEEEEecCCceEEEEEccCCchhHHHHHHHHHHHHhCCCCCeeeEEEEEcC-CCCcEEEEecCCCCcHHHHHHHhcCC
Confidence            48999987 66789999875      357789999999999999999998765 44789999999999999999764321


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------------  483 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------------  483 (615)
                              .+++.++..++.|++.||+|||+.+   ++||||||+||+++.++.+||+|||+++....            
T Consensus        99 --------~~~~~~~~~~~~~l~~~l~~LH~~~---i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~  167 (261)
T cd05072          99 --------KVLLPKLIDFSAQIAEGMAYIERKN---YIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFP  167 (261)
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHCC---eeccccchhhEEecCCCcEEECCCccceecCCCceeccCCCccc
Confidence                    3889999999999999999999987   99999999999999999999999999864321            


Q ss_pred             ------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          484 ------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       484 ------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  ..+.++|||||||++|||++ |+.|+.......   ...              .+........    .
T Consensus       168 ~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~---~~~--------------~~~~~~~~~~----~  226 (261)
T cd05072         168 IKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSD---VMS--------------ALQRGYRMPR----M  226 (261)
T ss_pred             eecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHHH---HHH--------------HHHcCCCCCC----C
Confidence                        13457999999999999998 898986533211   010              0111111111    1


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      ......+.+++.+|++.+|++||+++++.+.|+.+
T Consensus       227 ~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  261 (261)
T cd05072         227 ENCPDELYDIMKTCWKEKAEERPTFDYLQSVLDDF  261 (261)
T ss_pred             CCCCHHHHHHHHHHccCCcccCcCHHHHHHHHhcC
Confidence            12334578999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.98  E-value=8.8e-32  Score=274.33  Aligned_cols=237  Identities=27%  Similarity=0.422  Sum_probs=177.6

Q ss_pred             cccccccccc--ceEEEEEECCeEEEEEEcc----HHHHHHHHHHHh--cCCCCcccEEEEEEcCCC---cEEEEEeecC
Q 047629          333 MNLSEHYSIG--KSVYRATIDGKVLAVKKIK----EDVTEELRILQR--INHANLVKLMGVSSDSQG---NRFLVYEYAE  401 (615)
Q Consensus       333 ~~~~~~~~iG--~~Vy~~~~~g~~vAvK~~~----~~~~~Ei~~l~~--l~H~niv~l~g~~~~~~~---~~~lV~E~~~  401 (615)
                      .-+.+..+-|  |.||+|.|.|+.||||.+.    ..+.+|.+|.+.  |+|+||..+++.-..+.+   ++|||.+|.+
T Consensus       213 I~L~e~IGkGRyGEVwrG~wrGe~VAVKiF~srdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLvTdYHe  292 (513)
T KOG2052|consen  213 IVLQEIIGKGRFGEVWRGRWRGEDVAVKIFSSRDERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLVTDYHE  292 (513)
T ss_pred             eEEEEEecCccccceeeccccCCceEEEEecccchhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEeeeccc
Confidence            3344444444  6899999999999999995    458889999886  499999999986432233   3799999999


Q ss_pred             CCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHh-----CCCCCeEecCCCCCceeeCCCCcEEEeecC
Q 047629          402 NGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE-----HAQPSIVHRDIRTNNIQLDSRFKAKIANFS  476 (615)
Q Consensus       402 ~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-----~~~~~ivHrDlk~~NILld~~~~~kl~DFG  476 (615)
                      +|||.|||...           .++-...++++..+|.||+|||.     +++|.|.|||||+.|||+..++.+-|+|+|
T Consensus       293 ~GSL~DyL~r~-----------tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLG  361 (513)
T KOG2052|consen  293 HGSLYDYLNRN-----------TVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLG  361 (513)
T ss_pred             CCcHHHHHhhc-----------cCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeece
Confidence            99999999863           38999999999999999999995     579999999999999999999999999999


Q ss_pred             CCCCCCCC----------------C-----------------CCcccchhHHHHHHHHHcCC----------CCCCCCCC
Q 047629          477 LAAPATND----------------V-----------------MPKFDVFAFGVVLLELLSGK----------KATRTTEN  513 (615)
Q Consensus       477 la~~~~~~----------------~-----------------~~k~DV~SfGvvl~ElltG~----------~p~~~~~~  513 (615)
                      ||......                +                 ...+||||||.|+||+..+.          .||....+
T Consensus       362 LAv~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp  441 (513)
T KOG2052|consen  362 LAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVP  441 (513)
T ss_pred             eeEEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCC
Confidence            98432111                1                 12589999999999997642          34433221


Q ss_pred             ChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC-hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchhh
Q 047629          514 GKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP-IDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTET  591 (615)
Q Consensus       514 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~-~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~~  591 (615)
                      .+..  .+.++.+.         -.+.+.|.+...+. .+....+.+|++.||..+|..|-|+=-|-+.|.++.++.+.
T Consensus       442 ~DPs--~eeMrkVV---------Cv~~~RP~ipnrW~s~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l~~~~ek  509 (513)
T KOG2052|consen  442 SDPS--FEEMRKVV---------CVQKLRPNIPNRWKSDPALRVMAKLMKECWYANPAARLTALRIKKTLAKLSNSDEK  509 (513)
T ss_pred             CCCC--HHHHhcce---------eecccCCCCCcccccCHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhcChhh
Confidence            1110  11111111         11223444444333 35667899999999999999999999999999888765543

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.98  E-value=1.7e-31  Score=268.93  Aligned_cols=207  Identities=23%  Similarity=0.402  Sum_probs=165.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      +.||+|..  +|+.+|+|..+        ..+.+|++++++++|+||+++++++... ...++|+||+++|+|.+++...
T Consensus         9 g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~~   87 (252)
T cd05084           9 GEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQK-QPIYIVMELVQGGDFLTFLRTE   87 (252)
T ss_pred             ccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCC-CCeEEEEeeccCCcHHHHHHhC
Confidence            48999987  78999999764        2477899999999999999999998754 4789999999999999999754


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                      ..         .++|.+++.++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++...          
T Consensus        88 ~~---------~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  155 (252)
T cd05084          88 GP---------RLKVKELIQMVENAAAGMEYLESKH---CIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGM  155 (252)
T ss_pred             CC---------CCCHHHHHHHHHHHHHHHHHHHhCC---ccccccchheEEEcCCCcEEECccccCcccccccccccCCC
Confidence            32         3889999999999999999999998   9999999999999999999999999875321          


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                     ...+.++||||||+++|||++ |..|+.......       ..          ..+..    ...
T Consensus       156 ~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~-------~~----------~~~~~----~~~  214 (252)
T cd05084         156 KQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQ-------TR----------EAIEQ----GVR  214 (252)
T ss_pred             CCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHHH-------HH----------HHHHc----CCC
Confidence                           113457899999999999998 888875432110       00          01111    111


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      ...+......+.+++.+|++.+|++||++.|+.+.|.
T Consensus       215 ~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  251 (252)
T cd05084         215 LPCPELCPDAVYRLMERCWEYDPGQRPSFSTVHQELQ  251 (252)
T ss_pred             CCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHh
Confidence            1223334557899999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.98  E-value=2.4e-31  Score=270.11  Aligned_cols=209  Identities=28%  Similarity=0.468  Sum_probs=167.4

Q ss_pred             ceEEEEEEC-----CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATID-----GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~~-----g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      +.||+|.+.     ...||||.++        .++.+|+.++.+++|+||+++++++.+. +..+++|||+++|+|.+++
T Consensus        18 g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~iv~e~~~~~~L~~~~   96 (266)
T cd05033          18 GEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKS-RPVMIITEYMENGSLDKFL   96 (266)
T ss_pred             ceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecC-CceEEEEEcCCCCCHHHHH
Confidence            489999872     3579999875        2467899999999999999999988754 4789999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      .....         .++|.++.+++.|++.||+|||+++   |+||||||+||++++++.+||+|||+++...       
T Consensus        97 ~~~~~---------~~~~~~~~~~~~~l~~~l~~Lh~~~---i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~  164 (266)
T cd05033          97 RENDG---------KFTVGQLVGMLRGIASGMKYLSEMN---YVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYT  164 (266)
T ss_pred             HhccC---------CCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCcceEEEcCCCCEEECccchhhccccccccee
Confidence            76442         3899999999999999999999987   9999999999999999999999999886542       


Q ss_pred             ------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCC
Q 047629          483 ------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDP  543 (615)
Q Consensus       483 ------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp  543 (615)
                                        ..++.++||||||+++|||++ |+.|+......+   ...              .+.+..  
T Consensus       165 ~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~~---~~~--------------~~~~~~--  225 (266)
T cd05033         165 TKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQD---VIK--------------AVEDGY--  225 (266)
T ss_pred             ccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCCHHH---HHH--------------HHHcCC--
Confidence                              113568999999999999998 999986433211   111              111100  


Q ss_pred             cCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          544 NLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       544 ~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                        ....+.+....+.+++.+||+.+|++||++.||++.|.++
T Consensus       226 --~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         226 --RLPPPMDCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             --CCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence              0111233455689999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.98  E-value=7.8e-32  Score=288.18  Aligned_cols=220  Identities=24%  Similarity=0.376  Sum_probs=167.0

Q ss_pred             ceEEEEEE-------CCeEEEEEEccH--------HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI-------DGKVLAVKKIKE--------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~-------~g~~vAvK~~~~--------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      |.||++..       +++.||||+++.        .+.+|+++++++ +|+||++++|+|.+. +..++||||+++|+|.
T Consensus        52 g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~-~~~~lv~ey~~~g~L~  130 (374)
T cd05106          52 GKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHG-GPVLVITEYCCYGDLL  130 (374)
T ss_pred             ccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCC-CCeEEeHhhccCCcHH
Confidence            47998874       235799999852        467899999999 899999999998754 4799999999999999


Q ss_pred             HhhccCCCCC------------------------------------------------------------CCCCcccccC
Q 047629          407 KWLHPKSKSS------------------------------------------------------------SSSGSVIFLT  426 (615)
Q Consensus       407 ~~L~~~~~~~------------------------------------------------------------~~~~~~~~l~  426 (615)
                      +++.......                                                            ........++
T Consensus       131 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  210 (374)
T cd05106         131 NFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDSKDEEDTEDSWPLD  210 (374)
T ss_pred             HHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCccccccccccccchhccCCCCCcC
Confidence            9986432100                                                            0000112488


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------------------------
Q 047629          427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------------------------  482 (615)
Q Consensus       427 ~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------------------------  482 (615)
                      +.++++++.|++.||.|||+++   |+||||||+|||+++++.+||+|||+++...                        
T Consensus       211 ~~~~~~i~~qi~~aL~yLH~~g---iiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~  287 (374)
T cd05106         211 LDDLLRFSSQVAQGMDFLASKN---CIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIF  287 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCC---EEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCccceeCHHHhc
Confidence            9999999999999999999988   9999999999999999999999999985321                        


Q ss_pred             -CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHH
Q 047629          483 -NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATL  560 (615)
Q Consensus       483 -~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l  560 (615)
                       ..++.++|||||||++|||++ |+.||........  ..    ..          +.....+.    .+......+.++
T Consensus       288 ~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~~--~~----~~----------~~~~~~~~----~~~~~~~~l~~l  347 (374)
T cd05106         288 DCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSK--FY----KM----------VKRGYQMS----RPDFAPPEIYSI  347 (374)
T ss_pred             CCCCCccccHHHHHHHHHHHHhCCCCCCccccccHH--HH----HH----------HHcccCcc----CCCCCCHHHHHH
Confidence             124568999999999999997 9999875432111  00    00          00001111    112223568899


Q ss_pred             HHHhhhcCCCCCCCHHHHHHHHHhcc
Q 047629          561 ARACTMDKSLSRPNMAEVVFNLSVLT  586 (615)
Q Consensus       561 ~~~C~~~dP~~RPsm~ev~~~L~~l~  586 (615)
                      +.+||+.||++||++.||++.|+++.
T Consensus       348 i~~cl~~dp~~RPs~~~l~~~l~~~~  373 (374)
T cd05106         348 MKMCWNLEPTERPTFSQISQLIQRQL  373 (374)
T ss_pred             HHHHcCCChhhCcCHHHHHHHHHHHh
Confidence            99999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.98  E-value=2.2e-31  Score=272.80  Aligned_cols=211  Identities=23%  Similarity=0.386  Sum_probs=163.9

Q ss_pred             ceEEEEEE--CCe----EEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGK----VLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~----~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      +.||+|.+  +|+    .+++|.+.        .++..|+..+.+++|+||++++|++..  ...++++||+++|+|.++
T Consensus        21 ~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~--~~~~~i~e~~~~gsL~~~   98 (279)
T cd05111          21 GTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPG--ASLQLVTQLSPLGSLLDH   98 (279)
T ss_pred             cceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECC--CccEEEEEeCCCCcHHHH
Confidence            48999998  454    47888774        235567778899999999999998753  357899999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      +.....         .++|..+..++.|++.||+|||+.+   ++||||||+|||+++++.+||+|||+++...      
T Consensus        99 l~~~~~---------~~~~~~~~~i~~qi~~~l~~lH~~~---iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~~  166 (279)
T cd05111          99 VRQHRD---------SLDPQRLLNWCVQIAKGMYYLEEHR---MVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKY  166 (279)
T ss_pred             HHhccc---------CCCHHHHHHHHHHHHHHHHHHHHCC---EeccccCcceEEEcCCCcEEEcCCccceeccCCCccc
Confidence            976443         3899999999999999999999988   9999999999999999999999999985421      


Q ss_pred             -------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          483 -------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       483 -------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                         ..++.++||||||+++|||++ |+.|+.......       +...          +..-..
T Consensus       167 ~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~-------~~~~----------~~~~~~  229 (279)
T cd05111         167 FYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPHE-------VPDL----------LEKGER  229 (279)
T ss_pred             ccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHHH-------HHHH----------HHCCCc
Confidence                               113567899999999999998 999986543211       1111          110000


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      +.    .+..+...+.+++.+||..||++|||+.|+++.|..+...
T Consensus       230 ~~----~~~~~~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~~~  271 (279)
T cd05111         230 LA----QPQICTIDVYMVMVKCWMIDENVRPTFKELANEFTRMARD  271 (279)
T ss_pred             CC----CCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHhC
Confidence            11    1112234568899999999999999999999999876643

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.98  E-value=2.2e-31  Score=273.05  Aligned_cols=224  Identities=26%  Similarity=0.386  Sum_probs=169.7

Q ss_pred             ceEEEEEE------CCeEEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEEEEcCC-CcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI------DGKVLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQ-GNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~------~g~~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~~~~~~-~~~~lV~E~~~~GsL~~  407 (615)
                      |.||.+.+      +++.||+|.++.        .+.+|++++++++|+||+++++++...+ ...+++|||+++|+|.+
T Consensus        18 g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~   97 (283)
T cd05080          18 GKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRD   97 (283)
T ss_pred             cEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEEEecCCCCCCHHH
Confidence            46766543      577899998852        3678999999999999999999886543 24789999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++...           .++|.++..++.|++.||+|||+++   ++||||||+|||+++++.+||+|||+++...     
T Consensus        98 ~~~~~-----------~l~~~~~~~i~~~l~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~  163 (283)
T cd05080          98 YLPKH-----------KLNLAQLLLFAQQICEGMAYLHSQH---YIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEY  163 (283)
T ss_pred             HHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHCC---eeccccChheEEEcCCCcEEEeecccccccCCcchh
Confidence            99653           2899999999999999999999998   9999999999999999999999999986431     


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                           ...+.++||||||+++|||++|+.|+......... ......     .......+.+.+
T Consensus       164 ~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~  237 (283)
T cd05080         164 YRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEE-MIGPKQ-----GQMTVVRLIELL  237 (283)
T ss_pred             hccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhh-hhcccc-----cccchhhhhhhh
Confidence                                 12456899999999999999999997653321100 000000     000011122222


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcc
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLT  586 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~  586 (615)
                      +.......+......+.+++..||+.+|++||+++++++.|+.+.
T Consensus       238 ~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         238 ERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             hcCCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHhh
Confidence            222222234445567899999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.98  E-value=3.6e-31  Score=267.98  Aligned_cols=208  Identities=24%  Similarity=0.415  Sum_probs=165.9

Q ss_pred             ceEEEEEE----CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI----DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~----~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||+|.+    ++..||+|.++        +.+.+|+.++++++|+||+++++++. . ...++||||+++|+|.+++.
T Consensus         9 g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~-~-~~~~lv~e~~~~~~L~~~l~   86 (257)
T cd05115           9 GCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCE-A-EALMLVMEMASGGPLNKFLS   86 (257)
T ss_pred             ccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-C-CCeEEEEEeCCCCCHHHHHH
Confidence            47999876    35679999885        24778999999999999999999874 3 36899999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ....         .+++.++++++.|++.||.|||+++   ++||||||+|||++.++.+||+|||+++...        
T Consensus        87 ~~~~---------~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~  154 (257)
T cd05115          87 GKKD---------EITVSNVVELMHQVSMGMKYLEGKN---FVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKA  154 (257)
T ss_pred             hCCC---------CCCHHHHHHHHHHHHHHHHHHHhcC---eeecccchheEEEcCCCcEEeccCCccccccCCccceec
Confidence            5432         3899999999999999999999998   9999999999999999999999999885321        


Q ss_pred             ------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCC
Q 047629          483 ------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDP  543 (615)
Q Consensus       483 ------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp  543 (615)
                                        ...+.++||||||+++||+++ |+.|+......+.   ..              .+..    
T Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~---~~--------------~~~~----  213 (257)
T cd05115         155 RSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEV---MS--------------FIEQ----  213 (257)
T ss_pred             cCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHHHH---HH--------------HHHC----
Confidence                              113458999999999999996 9999875432110   00              0111    


Q ss_pred             cCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          544 NLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       544 ~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      ......+..+...+.+++..||..||++||++.+|.+.|+.+
T Consensus       214 ~~~~~~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~  255 (257)
T cd05115         214 GKRLDCPAECPPEMYALMKDCWIYKWEDRPNFAKVEERMRTY  255 (257)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence            111123344556788999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.98  E-value=3.6e-31  Score=272.58  Aligned_cols=220  Identities=28%  Similarity=0.422  Sum_probs=168.6

Q ss_pred             ceEEEEEEC-------CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATID-------GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~~-------g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||+|...       ...+|+|.+.        .++.+|++++++++||||+++++.+... +..++++||+++|+|.+
T Consensus        14 g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~   92 (290)
T cd05045          14 GKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQD-GPLLLIVEYAKYGSLRS   92 (290)
T ss_pred             cceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecC-CCcEEEEEecCCCCHHH
Confidence            479999862       2578999875        2477899999999999999999998754 47899999999999999


Q ss_pred             hhccCCCCCCC--------------CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEe
Q 047629          408 WLHPKSKSSSS--------------SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIA  473 (615)
Q Consensus       408 ~L~~~~~~~~~--------------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~  473 (615)
                      ++.........              ......+++.+++.++.|++.||.|||+++   ++||||||+|||+++++.+||+
T Consensus        93 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~---ivH~dikp~nill~~~~~~kl~  169 (290)
T cd05045          93 FLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMK---LVHRDLAARNVLVAEGRKMKIS  169 (290)
T ss_pred             HHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCC---eehhhhhhheEEEcCCCcEEec
Confidence            98753211000              001124899999999999999999999988   9999999999999999999999


Q ss_pred             ecCCCCCCC-------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHH
Q 047629          474 NFSLAAPAT-------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVL  527 (615)
Q Consensus       474 DFGla~~~~-------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~  527 (615)
                      |||+++...                         ...+.++||||||+++|||++ |+.|+......   .++..     
T Consensus       170 dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~---~~~~~-----  241 (290)
T cd05045         170 DFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPE---RLFNL-----  241 (290)
T ss_pred             cccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCHH---HHHHH-----
Confidence            999986421                         113567899999999999999 99888643311   11111     


Q ss_pred             hHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhccc
Q 047629          528 KVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       528 ~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~  587 (615)
                               +.+...    ...+......+.+++.+||+.+|++||+++|+++.|+.+..
T Consensus       242 ---------~~~~~~----~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~~  288 (290)
T cd05045         242 ---------LKTGYR----MERPENCSEEMYNLMLTCWKQEPDKRPTFADISKELEKMMV  288 (290)
T ss_pred             ---------HhCCCC----CCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHHHHh
Confidence                     111111    11233344568899999999999999999999999988754

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.98  E-value=3.3e-31  Score=269.22  Aligned_cols=209  Identities=27%  Similarity=0.491  Sum_probs=166.5

Q ss_pred             ceEEEEEE--CC---eEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DG---KVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g---~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      +.||+|..  ++   ..+|+|.++        .++..|++++++++|+|++++.+++.+. +..++||||+++|+|.+++
T Consensus        19 g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~~   97 (268)
T cd05063          19 GEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKF-KPAMIITEYMENGALDKYL   97 (268)
T ss_pred             ccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccC-CCcEEEEEcCCCCCHHHHH
Confidence            47999987  33   379999875        2467899999999999999999998754 4789999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      .....         .++|.++..++.|++.||+|||+.+   ++||||||+||+++.++.+|++|||++....       
T Consensus        98 ~~~~~---------~~~~~~~~~~~~~l~~al~~lH~~~---i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~  165 (268)
T cd05063          98 RDHDG---------EFSSYQLVGMLRGIAAGMKYLSDMN---YVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTY  165 (268)
T ss_pred             HhcCC---------CCCHHHHHHHHHHHHHHHHHHHHCC---eeccccchhhEEEcCCCcEEECCCccceecccccccce
Confidence            75432         3899999999999999999999998   9999999999999999999999999885331       


Q ss_pred             -------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          483 -------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       483 -------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                         ..++.++|||||||++|||++ |+.|+......+   ...              .+..   
T Consensus       166 ~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~~~---~~~--------------~i~~---  225 (268)
T cd05063         166 TTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNHE---VMK--------------AIND---  225 (268)
T ss_pred             eccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCHHH---HHH--------------HHhc---
Confidence                               113457899999999999997 999986433211   110              0110   


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                       ......+.+....+.+++.+||+.+|++||+|.+|++.|.++
T Consensus       226 -~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~  267 (268)
T cd05063         226 -GFRLPAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKL  267 (268)
T ss_pred             -CCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence             011112233456689999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.98  E-value=4.5e-31  Score=268.68  Aligned_cols=215  Identities=24%  Similarity=0.413  Sum_probs=164.0

Q ss_pred             ceEEEEEEC--Ce--EEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCC-----CcEEEEEeecCCCC
Q 047629          343 KSVYRATID--GK--VLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQ-----GNRFLVYEYAENGS  404 (615)
Q Consensus       343 ~~Vy~~~~~--g~--~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~-----~~~~lV~E~~~~Gs  404 (615)
                      |.||+|.+.  ++  .+|+|.++         +.+.+|++++++++|+||++++++|....     ...++++||+++|+
T Consensus        13 g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~   92 (272)
T cd05075          13 GSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGD   92 (272)
T ss_pred             ceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCcEEEEEeCCCCc
Confidence            489999973  32  68999764         24678999999999999999999875321     13689999999999


Q ss_pred             HHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--
Q 047629          405 LDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--  482 (615)
Q Consensus       405 L~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--  482 (615)
                      |.+++.......    ....++|.....++.|++.||+|||+++   |+||||||+|||+++++.+||+|||+++...  
T Consensus        93 l~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  165 (272)
T cd05075          93 LHSFLLYSRLGD----CPQYLPTQMLVKFMTDIASGMEYLSSKS---FIHRDLAARNCMLNENMNVCVADFGLSKKIYNG  165 (272)
T ss_pred             HHHHHHHhcccC----CcccCCHHHHHHHHHHHHHHHHHHHHCC---eeccccchhheEEcCCCCEEECCCCcccccCcc
Confidence            999985432111    1124899999999999999999999987   9999999999999999999999999986431  


Q ss_pred             -----------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHh
Q 047629          483 -----------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLR  538 (615)
Q Consensus       483 -----------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  538 (615)
                                             ..++.++||||||+++|||++ |+.|+......   ..+.    .          +.
T Consensus       166 ~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~---~~~~----~----------~~  228 (272)
T cd05075         166 DYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENS---EIYD----Y----------LR  228 (272)
T ss_pred             cceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHH---HHHH----H----------HH
Confidence                                   113568999999999999999 78888653321   1111    0          01


Q ss_pred             hhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          539 NWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       539 ~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      ..  ...  ..+......+.+++.+||+.||++|||+.|+++.|+.+
T Consensus       229 ~~--~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         229 QG--NRL--KQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             cC--CCC--CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            00  000  11223445689999999999999999999999999764

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.98  E-value=3.4e-31  Score=267.80  Aligned_cols=207  Identities=26%  Similarity=0.430  Sum_probs=164.4

Q ss_pred             ceEEEEEEC-CeEEEEEEccH------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATID-GKVLAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~~-g~~vAvK~~~~------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      +.||.|.+. +..+|||.++.      ++.+|+.++.+++||||+++++++.+. ...++||||+++|+|.+++..... 
T Consensus        18 ~~vy~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~l~~~i~~~~~-   95 (256)
T cd05113          18 GVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQ-RPIYIVTEYMSNGCLLNYLREHGK-   95 (256)
T ss_pred             ceEEEEEecCCCcEEEEEcCCCcccHHHHHHHHHHHhcCCCCCeeeEEEEEccC-CCcEEEEEcCCCCcHHHHHHhcCC-
Confidence            589999884 45699998863      478899999999999999999998754 468999999999999999975432 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------------  482 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------------  482 (615)
                              .++|.+++.++.|++.||.|||+.+   ++|+||||+||+++.++.+||+|||+++...             
T Consensus        96 --------~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~  164 (256)
T cd05113          96 --------RFQPSQLLEMCKDVCEGMAYLESKQ---FIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFP  164 (256)
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHhCC---eeccccCcceEEEcCCCCEEECCCccceecCCCceeecCCCccC
Confidence                    3899999999999999999999998   9999999999999999999999999876321             


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                 ..++.++||||||+++|||++ |+.|+......+   ...              .+.....+    ..+
T Consensus       165 ~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~---~~~--------------~~~~~~~~----~~~  223 (256)
T cd05113         165 VRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSE---TVE--------------KVSQGLRL----YRP  223 (256)
T ss_pred             hhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHHH---HHH--------------HHhcCCCC----CCC
Confidence                       113568999999999999999 999986543211   010              01110011    112


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      ......+.+++.+||+.||.+||++.+++..|+
T Consensus       224 ~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~~  256 (256)
T cd05113         224 HLASEKVYAIMYSCWHEKAEERPTFQQLLSSIE  256 (256)
T ss_pred             CCCCHHHHHHHHHHcCCCcccCCCHHHHHHhhC
Confidence            223456899999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.98  E-value=3.8e-31  Score=270.43  Aligned_cols=216  Identities=22%  Similarity=0.381  Sum_probs=164.4

Q ss_pred             ceEEEEEEC-------CeEEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATID-------GKVLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~~-------g~~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      +.||+|...       +..||||+++.        ++.+|+.++++++|+||+++++++.+. ...++||||+++|+|.+
T Consensus        20 g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~   98 (277)
T cd05062          20 GMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG-QPTLVIMELMTRGDLKS   98 (277)
T ss_pred             CeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCC-CCeEEEEecCCCCCHHH
Confidence            479988753       46799998752        367899999999999999999998654 47899999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++...............++|.++..++.|++.||+|||+.+   ++||||||+||++++++.+||+|||+++...     
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---~vH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~  175 (277)
T cd05062          99 YLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANK---FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYY  175 (277)
T ss_pred             HHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCcchheEEEcCCCCEEECCCCCccccCCccee
Confidence            99754321110001124789999999999999999999987   9999999999999999999999999875321     


Q ss_pred             --------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 --------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 --------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                          ...+.++|||||||++|||++ |..|+......+.   ..    .             ..
T Consensus       176 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~~~~---~~----~-------------~~  235 (277)
T cd05062         176 RKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNEQV---LR----F-------------VM  235 (277)
T ss_pred             ecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHH---HH----H-------------HH
Confidence                                124568999999999999999 6778764332110   00    0             00


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      .... ...+......+.+++.+|++.||++||++.|+++.|+
T Consensus       236 ~~~~-~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~  276 (277)
T cd05062         236 EGGL-LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIK  276 (277)
T ss_pred             cCCc-CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHhh
Confidence            0000 1122334456899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.98  E-value=2.2e-31  Score=280.77  Aligned_cols=222  Identities=27%  Similarity=0.404  Sum_probs=169.4

Q ss_pred             ceEEEEEE-------CCeEEEEEEcc--------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI-------DGKVLAVKKIK--------EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~-------~g~~vAvK~~~--------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      |.||+|..       .++.||+|+++        +.+..|++++.++ +|+||++++++|...+...++++||+++|+|.
T Consensus        21 g~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~~~~v~ey~~~~~L~  100 (337)
T cd05054          21 GKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEYCKFGNLS  100 (337)
T ss_pred             ceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCCCEEEEEecCCCCCHH
Confidence            58999864       24789999875        2356799999999 89999999999876666789999999999999


Q ss_pred             HhhccCCCCCCC---------------------------------------------------CCcccccCHHHHHHHHH
Q 047629          407 KWLHPKSKSSSS---------------------------------------------------SGSVIFLTWSQRLRVAL  435 (615)
Q Consensus       407 ~~L~~~~~~~~~---------------------------------------------------~~~~~~l~~~~~~~i~~  435 (615)
                      +++.........                                                   ......++|..+..++.
T Consensus       101 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  180 (337)
T cd05054         101 NYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELYKEPLTLEDLISYSF  180 (337)
T ss_pred             HHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHHhhcCCCHHHHHHHHH
Confidence            998653210000                                                   00012589999999999


Q ss_pred             HHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------------------------CCCCCccc
Q 047629          436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------------------------NDVMPKFD  490 (615)
Q Consensus       436 ~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------------------------~~~~~k~D  490 (615)
                      ||+.||+|||+++   |+||||||+|||++.++.+||+|||+++...                         ..++.++|
T Consensus       181 qi~~aL~~lH~~~---ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  257 (337)
T cd05054         181 QVARGMEFLASRK---CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVYTTQSD  257 (337)
T ss_pred             HHHHHHHHHHhCC---eecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcHHhcCCCCCcccc
Confidence            9999999999987   9999999999999999999999999986431                         12456899


Q ss_pred             chhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCC
Q 047629          491 VFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKS  569 (615)
Q Consensus       491 V~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP  569 (615)
                      ||||||++|||++ |+.|+......+.  +.    .          .+.+...+    ..+.....++.+++.+||+.+|
T Consensus       258 i~SlGv~l~el~t~g~~p~~~~~~~~~--~~----~----------~~~~~~~~----~~~~~~~~~~~~l~~~cl~~~p  317 (337)
T cd05054         258 VWSFGVLLWEIFSLGASPYPGVQIDEE--FC----R----------RLKEGTRM----RAPEYATPEIYSIMLDCWHNNP  317 (337)
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCCccHH--HH----H----------HHhccCCC----CCCccCCHHHHHHHHHHccCCh
Confidence            9999999999998 9999865332211  11    0          11111111    1122334568999999999999


Q ss_pred             CCCCCHHHHHHHHHhccc
Q 047629          570 LSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       570 ~~RPsm~ev~~~L~~l~~  587 (615)
                      ++||++.||+++|+.+.+
T Consensus       318 ~~RPs~~ell~~l~~~~~  335 (337)
T cd05054         318 EDRPTFSELVEILGDLLQ  335 (337)
T ss_pred             hhCcCHHHHHHHHHHHHh
Confidence            999999999999987754

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.98  E-value=4.6e-31  Score=266.32  Aligned_cols=210  Identities=27%  Similarity=0.463  Sum_probs=169.4

Q ss_pred             ceEEEEEECCeEEEEEEccH------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCC
Q 047629          343 KSVYRATIDGKVLAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSS  416 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~~------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~  416 (615)
                      |.||++...|+.||+|.++.      .+.+|+.++++++|+||+++++++.+ +...++||||+++|+|.+++...... 
T Consensus        20 g~v~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~~v~e~~~~~~L~~~~~~~~~~-   97 (256)
T cd05039          20 GDVMLGDYRGQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLLGVVLQ-GNPLYIVTEYMAKGSLVDYLRSRGRA-   97 (256)
T ss_pred             ceEEEEEecCcEEEEEEeccchhHHHHHHHHHHHHHhcCCcceeeeEEEEcC-CCCeEEEEEecCCCcHHHHHHhcCCC-
Confidence            58999999999999999863      46789999999999999999999875 45789999999999999999765421 


Q ss_pred             CCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------------
Q 047629          417 SSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------------  482 (615)
Q Consensus       417 ~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------------  482 (615)
                             .++|..+..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++...              
T Consensus        98 -------~~~~~~~~~~~~qi~~~l~~lh~~~---i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~a  167 (256)
T cd05039          98 -------VITLAQQLGFALDVCEGMEYLEEKN---FVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGKLPVKWTA  167 (256)
T ss_pred             -------CCCHHHHHHHHHHHHHHHHHHHhCC---ccchhcccceEEEeCCCCEEEcccccccccccccccCCCcccccC
Confidence                   3899999999999999999999998   9999999999999999999999999876432              


Q ss_pred             ------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHH
Q 047629          483 ------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGAL  555 (615)
Q Consensus       483 ------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~  555 (615)
                            ...+.++||||||+++||+++ |+.|+......+       +...          +..    ......+...+.
T Consensus       168 pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~-------~~~~----------~~~----~~~~~~~~~~~~  226 (256)
T cd05039         168 PEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD-------VVPH----------VEK----GYRMEAPEGCPP  226 (256)
T ss_pred             chhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHHH-------HHHH----------Hhc----CCCCCCccCCCH
Confidence                  123457999999999999997 998886443110       1100          110    001112223345


Q ss_pred             HHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          556 SLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       556 ~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      .+.+++.+||+.+|++||++.|+++.|+.+
T Consensus       227 ~~~~li~~~l~~~p~~Rp~~~~l~~~l~~~  256 (256)
T cd05039         227 EVYKVMKDCWELDPAKRPTFKQLREQLALI  256 (256)
T ss_pred             HHHHHHHHHhccChhhCcCHHHHHHHHhcC
Confidence            688999999999999999999999999753

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.98  E-value=6e-32  Score=286.87  Aligned_cols=204  Identities=26%  Similarity=0.370  Sum_probs=167.2

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.|-.|+.  +|+.+|||.+.+.          +.+||-+|+-+.|||+++|++++.+.. ++|||.||+++|.|.++|.
T Consensus        26 g~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~-~lylvlEyv~gGELFdylv  104 (786)
T KOG0588|consen   26 GCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQ-HLYLVLEYVPGGELFDYLV  104 (786)
T ss_pred             ceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCc-eEEEEEEecCCchhHHHHH
Confidence            35666665  8999999998643          678999999999999999999987654 8999999999999999998


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND------  484 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~------  484 (615)
                      .++.          |+..+..+++.||..|+.|+|..+   |+||||||+|+|||.+.++||+|||+|.+...+      
T Consensus       105 ~kG~----------l~e~eaa~ff~QIi~gv~yCH~~~---icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gklLeTS  171 (786)
T KOG0588|consen  105 RKGP----------LPEREAAHFFRQILDGVSYCHAFN---ICHRDLKPENLLLDVKNNIKIADFGMASLEVPGKLLETS  171 (786)
T ss_pred             hhCC----------CCCHHHHHHHHHHHHHHHHHhhhc---ceeccCCchhhhhhcccCEeeeccceeecccCCcccccc
Confidence            7764          889999999999999999999998   999999999999999999999999999765322      


Q ss_pred             -----------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          485 -----------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       485 -----------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                       -..++||||+|||||-|+||+.||++..   ...+...++         .+.          -
T Consensus       172 CGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdN---ir~LLlKV~---------~G~----------f  229 (786)
T KOG0588|consen  172 CGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDN---IRVLLLKVQ---------RGV----------F  229 (786)
T ss_pred             CCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCcc---HHHHHHHHH---------cCc----------c
Confidence                             2358999999999999999999998432   111111111         110          1


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      +.|.....+..+|+.+++..||++|.|++||+++-
T Consensus       230 ~MPs~Is~eaQdLLr~ml~VDp~~RiT~~eI~kHP  264 (786)
T KOG0588|consen  230 EMPSNISSEAQDLLRRMLDVDPSTRITTEEILKHP  264 (786)
T ss_pred             cCCCcCCHHHHHHHHHHhccCccccccHHHHhhCc
Confidence            22344445568999999999999999999999974

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.97  E-value=3.2e-31  Score=268.07  Aligned_cols=210  Identities=24%  Similarity=0.423  Sum_probs=169.1

Q ss_pred             ceEEEEEE-CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      +.||+|.. +++.+|+|.++       .++..|+.++++++|+||+++++++.+. ...++||||+++|+|.+++.....
T Consensus        20 ~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~~~~   98 (261)
T cd05148          20 GEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVG-EPVYIITELMEKGSLLAFLRSPEG   98 (261)
T ss_pred             ccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecC-CCeEEEEeecccCCHHHHHhcCCC
Confidence            48999998 67889999876       3467899999999999999999998754 478999999999999999976432


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------------  482 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------------  482 (615)
                      .        .+++.++..++.|++.||.|||+++   ++||||||+||++++++.+||+|||++....            
T Consensus        99 ~--------~~~~~~~~~~~~~i~~al~~lH~~~---i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~  167 (261)
T cd05148          99 Q--------VLPVASLIDMACQVAEGMAYLEEQN---SIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIP  167 (261)
T ss_pred             C--------CCCHHHHHHHHHHHHHHHHHHHHCC---eeccccCcceEEEcCCceEEEccccchhhcCCccccccCCCCc
Confidence            1        3899999999999999999999988   9999999999999999999999999885431            


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                 ...+.++||||||+++|||++ |+.|+......+.   ...              +.    .......+
T Consensus       168 ~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~~~---~~~--------------~~----~~~~~~~~  226 (261)
T cd05148         168 YKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEV---YDQ--------------IT----AGYRMPCP  226 (261)
T ss_pred             eEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHHHH---HHH--------------HH----hCCcCCCC
Confidence                       124568999999999999998 8888865432111   000              00    01111223


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      ......+.+++.+||+.||.+|||++++++.|+.+
T Consensus       227 ~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~~  261 (261)
T cd05148         227 AKCPQEIYKIMLECWAAEPEDRPSFKALREELDNI  261 (261)
T ss_pred             CCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhcC
Confidence            34455688999999999999999999999999753

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.97  E-value=5.6e-31  Score=269.30  Aligned_cols=213  Identities=29%  Similarity=0.395  Sum_probs=166.4

Q ss_pred             ceEEEEEEC-------CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATID-------GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~~-------g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      +.||+|...       +..||+|.+.        .++..|+.++++++|+||+++++++.+. ...++||||+++|+|.+
T Consensus        20 g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-~~~~lv~e~~~g~~L~~   98 (277)
T cd05036          20 GEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFER-LPRFILLELMAGGDLKS   98 (277)
T ss_pred             CcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccC-CCcEEEEecCCCCCHHH
Confidence            489999883       4679999875        2478899999999999999999988754 47899999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC---cEEEeecCCCCCCC--
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF---KAKIANFSLAAPAT--  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~---~~kl~DFGla~~~~--  482 (615)
                      ++........   ....++|.++++++.||+.||+|||+++   ++||||||+||+++.++   .+||+|||+++...  
T Consensus        99 ~i~~~~~~~~---~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~  172 (277)
T cd05036          99 FLRENRPRPE---RPSSLTMKDLLFCARDVAKGCKYLEENH---FIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRA  172 (277)
T ss_pred             HHHHhCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccchheEEEeccCCCcceEeccCccccccCCc
Confidence            9976542211   1124899999999999999999999998   99999999999998754   69999999986431  


Q ss_pred             -----------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHh
Q 047629          483 -----------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLR  538 (615)
Q Consensus       483 -----------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  538 (615)
                                             ..++.++|||||||++|||++ |+.||......+.   ..                 
T Consensus       173 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~~~---~~-----------------  232 (277)
T cd05036         173 SYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQEV---ME-----------------  232 (277)
T ss_pred             cceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHH---HH-----------------
Confidence                                   124568999999999999997 9889875432111   00                 


Q ss_pred             hhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          539 NWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       539 ~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                       .+........+...+..+.+++.+|++.+|++||++.||++.|.
T Consensus       233 -~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~  276 (277)
T cd05036         233 -FVTGGGRLDPPKGCPGPVYRIMTDCWQHTPEDRPNFATILERIQ  276 (277)
T ss_pred             -HHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence             01011111233444567899999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.97  E-value=4.6e-31  Score=272.03  Aligned_cols=222  Identities=26%  Similarity=0.410  Sum_probs=170.6

Q ss_pred             ceEEEEEE-------CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI-------DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~-------~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      +.||++..       ++..+++|.++       +.+.+|++++++++|+||+++++++... ...++||||+++|+|.++
T Consensus        19 g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~   97 (291)
T cd05094          19 GKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDG-DPLIMVFEYMKHGDLNKF   97 (291)
T ss_pred             CeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccC-CceEEEEecCCCCcHHHH
Confidence            47998874       34679999986       3577899999999999999999998754 478999999999999999


Q ss_pred             hccCCCCCC------CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC
Q 047629          409 LHPKSKSSS------SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT  482 (615)
Q Consensus       409 L~~~~~~~~------~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~  482 (615)
                      +........      .......++|.+++.++.|++.||+|||+++   ++||||||+|||++.++.+||+|||+++...
T Consensus        98 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~---i~H~dlkp~Nil~~~~~~~~l~dfg~a~~~~  174 (291)
T cd05094          98 LRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQH---FVHRDLATRNCLVGANLLVKIGDFGMSRDVY  174 (291)
T ss_pred             HHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccCcceEEEccCCcEEECCCCcccccC
Confidence            976432100      0000113899999999999999999999998   9999999999999999999999999985321


Q ss_pred             -------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHH
Q 047629          483 -------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREER  536 (615)
Q Consensus       483 -------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  536 (615)
                                               ..++.++||||||+++|||++ |+.|+......+   .+..              
T Consensus       175 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~---~~~~--------------  237 (291)
T cd05094         175 STDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTE---VIEC--------------  237 (291)
T ss_pred             CCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH---HHHH--------------
Confidence                                     113568999999999999999 999986543211   1100              


Q ss_pred             HhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          537 LRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       537 ~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                         +..... ...+...+..+.+++.+||+.||++||++++|++.|..+....
T Consensus       238 ---~~~~~~-~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~~~  286 (291)
T cd05094         238 ---ITQGRV-LERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYKILHALGKAT  286 (291)
T ss_pred             ---HhCCCC-CCCCccCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHhhc
Confidence               001000 1112233456889999999999999999999999999886653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.97  E-value=2.4e-31  Score=279.40  Aligned_cols=203  Identities=20%  Similarity=0.300  Sum_probs=162.6

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||++..  +|+.||||.++.          .+.+|+.++++++||||+++++++.+. +..++||||+++|+|.+++.
T Consensus        32 g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~  110 (329)
T PTZ00263         32 GRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDE-NRVYFLLEFVVGGELFTHLR  110 (329)
T ss_pred             eEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcC-CEEEEEEcCCCCChHHHHHH
Confidence            58999998  689999998863          356899999999999999999998754 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------  483 (615)
                      ...          .+++.....++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++....       
T Consensus       111 ~~~----------~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~g  177 (329)
T PTZ00263        111 KAG----------RFPNDVAKFYHAELVLAFEYLHSKD---IIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRTFTLCG  177 (329)
T ss_pred             HcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHEEECCCCCEEEeeccCceEcCCCcceecC
Confidence            643          2788899999999999999999998   99999999999999999999999999864321       


Q ss_pred             -------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          484 -------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       484 -------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                   ..+.++|||||||++|||++|+.||.....   ....   .           .+   ....+  .++
T Consensus       178 t~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~---~~~~---~-----------~i---~~~~~--~~p  235 (329)
T PTZ00263        178 TPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTP---FRIY---E-----------KI---LAGRL--KFP  235 (329)
T ss_pred             ChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCH---HHHH---H-----------HH---hcCCc--CCC
Confidence                         245689999999999999999999965331   1111   0           01   11111  122


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCC-----HHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPN-----MAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPs-----m~ev~~~  581 (615)
                      ......+.+++..||+.||.+||+     ++|++.+
T Consensus       236 ~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h  271 (329)
T PTZ00263        236 NWFDGRARDLVKGLLQTDHTKRLGTLKGGVADVKNH  271 (329)
T ss_pred             CCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence            223345789999999999999997     6777755

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.97  E-value=4e-31  Score=271.83  Aligned_cols=209  Identities=21%  Similarity=0.292  Sum_probs=164.3

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||+|.+..          .+.+|+.++.+++|+||+++.+++.+. +..++|+||+++|+|.+++.
T Consensus        14 g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~-~~~~lv~e~~~~g~L~~~~~   92 (285)
T cd05631          14 GEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETK-DALCLVLTIMNGGDLKFHIY   92 (285)
T ss_pred             EEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccC-CeEEEEEEecCCCcHHHHHH
Confidence            48999987  789999998752          256799999999999999999988754 47999999999999998886


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      .....        .+++.++..++.|++.||+|||+.+   |+||||||+|||+++++.+||+|||++....        
T Consensus        93 ~~~~~--------~~~~~~~~~~~~qi~~~l~~lH~~~---iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~  161 (285)
T cd05631          93 NMGNP--------GFDEQRAIFYAAELCCGLEDLQRER---IVYRDLKPENILLDDRGHIRISDLGLAVQIPEGETVRGR  161 (285)
T ss_pred             hhCCC--------CCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCeecCC
Confidence            43321        3899999999999999999999998   9999999999999999999999999985421        


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                    ..++.++|||||||++|||++|+.||.........   ..+..          .+.   ++  ...
T Consensus       162 ~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~---~~~~~----------~~~---~~--~~~  223 (285)
T cd05631         162 VGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKR---EEVDR----------RVK---ED--QEE  223 (285)
T ss_pred             CCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhH---HHHHH----------Hhh---cc--ccc
Confidence                          12456899999999999999999999765432111   00100          010   00  112


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCC-----HHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPN-----MAEVVFN  581 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPs-----m~ev~~~  581 (615)
                      ++.+....+.+|+..||+.||++||+     +.|+++.
T Consensus       224 ~~~~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h  261 (285)
T cd05631         224 YSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQH  261 (285)
T ss_pred             CCccCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhcC
Confidence            33334456789999999999999997     7888774

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.97  E-value=4.4e-31  Score=266.74  Aligned_cols=206  Identities=26%  Similarity=0.416  Sum_probs=165.3

Q ss_pred             ceEEEEEE-CCeEEEEEEccH------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~~------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      +.||++.. ++..+|+|.+++      ++.+|++++++++|+||+++++++... +..++|+||+++++|.+++..... 
T Consensus        18 ~~v~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~~-   95 (256)
T cd05059          18 GVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQ-RPIFIVTEYMANGCLLNYLRERKG-   95 (256)
T ss_pred             ceEEEeEecCCccEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEEEEEEEEcCC-CceEEEEecCCCCCHHHHHHhccc-
Confidence            48999987 456899998752      577899999999999999999988654 478999999999999999975432 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------------  482 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------------  482 (615)
                              .++|..+..++.|++.||.|||+.+   ++||||||+||++++++.+||+|||+++...             
T Consensus        96 --------~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~  164 (256)
T cd05059          96 --------KLGTEWLLDMCSDVCEAMEYLESNG---FIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFP  164 (256)
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHCC---cccccccHhhEEECCCCcEEECCcccceecccccccccCCCCCC
Confidence                    3899999999999999999999998   9999999999999999999999999875321             


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                 ..++.++||||||+++|||++ |+.|+......+   ...              .+.....+    ..+
T Consensus       165 ~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~---~~~--------------~~~~~~~~----~~~  223 (256)
T cd05059         165 VKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSE---VVE--------------SVSAGYRL----YRP  223 (256)
T ss_pred             ccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHHH---HHH--------------HHHcCCcC----CCC
Confidence                       123458999999999999999 788886543211   110              11111111    122


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      ......+.+++.+||+.+|++||+|.|+++.|
T Consensus       224 ~~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         224 KLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence            23455689999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.97  E-value=4.7e-32  Score=267.35  Aligned_cols=229  Identities=22%  Similarity=0.285  Sum_probs=173.0

Q ss_pred             cccccccc----ceEEEEEE--CCeEEEEEEccHH---------HHHHHHHHHhcCCCCcccEEEEEEcCC-CcEEEEEe
Q 047629          335 LSEHYSIG----KSVYRATI--DGKVLAVKKIKED---------VTEELRILQRINHANLVKLMGVSSDSQ-GNRFLVYE  398 (615)
Q Consensus       335 ~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~~---------~~~Ei~~l~~l~H~niv~l~g~~~~~~-~~~~lV~E  398 (615)
                      |...++|+    |.||||..  +++.||+|+++.+         ..+||.+|.+++|||||.+..+....+ ...|+|||
T Consensus        78 fe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~VMe  157 (419)
T KOG0663|consen   78 FEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYIVME  157 (419)
T ss_pred             HHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeeeeHH
Confidence            33444554    58999997  7899999999743         468999999999999999988865432 35899999


Q ss_pred             ecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCC
Q 047629          399 YAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA  478 (615)
Q Consensus       399 ~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  478 (615)
                      ||+. +|...++.-..         .+...+...++.|+++|+.|||+++   |+|||||++|+|+...|.+||+|||||
T Consensus       158 ~~Eh-DLksl~d~m~q---------~F~~~evK~L~~QlL~glk~lH~~w---ilHRDLK~SNLLm~~~G~lKiaDFGLA  224 (419)
T KOG0663|consen  158 YVEH-DLKSLMETMKQ---------PFLPGEVKTLMLQLLRGLKHLHDNW---ILHRDLKTSNLLLSHKGILKIADFGLA  224 (419)
T ss_pred             HHHh-hHHHHHHhccC---------CCchHHHHHHHHHHHHHHHHHhhce---eEecccchhheeeccCCcEEecccchh
Confidence            9987 99999987653         3888999999999999999999999   999999999999999999999999999


Q ss_pred             CCCCCC------------------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHH
Q 047629          479 APATND------------------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKRE  534 (615)
Q Consensus       479 ~~~~~~------------------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~  534 (615)
                      |.....                        +++..|+||+|||+.||+++++-|.+..+-+..   +.+...+....  +
T Consensus       225 R~ygsp~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl---~~If~llGtPt--e  299 (419)
T KOG0663|consen  225 REYGSPLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQL---DKIFKLLGTPS--E  299 (419)
T ss_pred             hhhcCCcccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHH---HHHHHHhCCCc--c
Confidence            876432                        567899999999999999999888765542222   22222221100  0


Q ss_pred             HHHhhhc--------------CCcCCCCCChH-HHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          535 ERLRNWM--------------DPNLESFYPID-GALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       535 ~~~~~~~--------------dp~l~~~~~~~-~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .....+-              -..+...++.. ....-.+|....+..||.+|-|+.|.+++
T Consensus       300 ~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~h  361 (419)
T KOG0663|consen  300 AIWPGYSELPAVKKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLKH  361 (419)
T ss_pred             ccCCCccccchhhccccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHHhhcc
Confidence            0000000              01122222222 33556889999999999999999998875

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.97  E-value=4.4e-31  Score=277.65  Aligned_cols=224  Identities=21%  Similarity=0.295  Sum_probs=165.4

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||++..  +|..+|+|.++        ..+.+|+++|++++|+||+++++++... +..++||||+++|+|.+++...
T Consensus        19 g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~   97 (331)
T cd06649          19 GVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD-GEISICMEHMDGGSLDQVLKEA   97 (331)
T ss_pred             EEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEEC-CEEEEEeecCCCCcHHHHHHHc
Confidence            58999988  58899999875        3477899999999999999999998754 4799999999999999999764


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                      .          .+++..+..++.|++.||.|||+.+  .|+||||||+|||++.++.+||+|||+++...          
T Consensus        98 ~----------~~~~~~~~~~~~~i~~~l~~lH~~~--~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~g~  165 (331)
T cd06649          98 K----------RIPEEILGKVSIAVLRGLAYLREKH--QIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGT  165 (331)
T ss_pred             C----------CCCHHHHHHHHHHHHHHHHHHhhcC--CEEcCCCChhhEEEcCCCcEEEccCcccccccccccccCCCC
Confidence            3          2889999999999999999999853  39999999999999999999999999985431          


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHH-hHH--------------------
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVL-KVE--------------------  530 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~-~~~--------------------  530 (615)
                                 ..++.++|||||||++|||++|+.||......+   +...+.... ...                    
T Consensus       166 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (331)
T cd06649         166 RSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAKE---LEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSG  242 (331)
T ss_pred             cCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHhcccccccccCCccccCcccccccccccc
Confidence                       124568999999999999999999996543211   111000000 000                    


Q ss_pred             --------HHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          531 --------EKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       531 --------~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                              .........+................+.+++.+||+.||++|||++|++++.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h~  302 (331)
T cd06649         243 HGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMNHT  302 (331)
T ss_pred             cccccccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCCCHHHHhcCh
Confidence                    0000000001110000000112334589999999999999999999999874

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.8e-32  Score=274.78  Aligned_cols=237  Identities=22%  Similarity=0.303  Sum_probs=174.4

Q ss_pred             cccccccc----ceEEEEEE--CCeEEEEEEccHH---HHHHHHHHHhcCCCCcccEEEEEEcCCCc----EEEEEeecC
Q 047629          335 LSEHYSIG----KSVYRATI--DGKVLAVKKIKED---VTEELRILQRINHANLVKLMGVSSDSQGN----RFLVYEYAE  401 (615)
Q Consensus       335 ~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~~---~~~Ei~~l~~l~H~niv~l~g~~~~~~~~----~~lV~E~~~  401 (615)
                      +.....+|    |.||+|..  +++.||||+.-.+   -.+|+++|+++.|||||+|+-++....+.    ..|||||||
T Consensus        26 ~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVleymP  105 (364)
T KOG0658|consen   26 YEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRYKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLEYMP  105 (364)
T ss_pred             EEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCcCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHHhch
Confidence            34444555    58999998  6789999998644   45799999999999999999887643322    358999999


Q ss_pred             CCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC-CcEEEeecCCCCC
Q 047629          402 NGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR-FKAKIANFSLAAP  480 (615)
Q Consensus       402 ~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-~~~kl~DFGla~~  480 (615)
                      . +|.++++.....+      ..++...+.-+..|+.+||.|||+++   |+||||||.|+|+|.+ +.+||+|||.|+.
T Consensus       106 ~-tL~~~~r~~~~~~------~~mp~~~iKLYt~Qlfrgl~yLh~~~---IcHRDIKPqNlLvD~~tg~LKicDFGSAK~  175 (364)
T KOG0658|consen  106 E-TLYRVIRHYTRAN------QRMPLLEIKLYTYQLFRGLAYLHSHG---ICHRDIKPQNLLVDPDTGVLKICDFGSAKV  175 (364)
T ss_pred             H-HHHHHHHHHhhcC------CCCceeeeHHHHHHHHHHHHHHHhcC---cccCCCChheEEEcCCCCeEEeccCCccee
Confidence            7 9999998521111      12677778889999999999999988   9999999999999987 9999999999976


Q ss_pred             CCC-----------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHH
Q 047629          481 ATN-----------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERL  537 (615)
Q Consensus       481 ~~~-----------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  537 (615)
                      ...                       .++.+.||||.|||+.||+-|+.-|.+....+...+.-.+......++...-..
T Consensus       176 L~~~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~  255 (364)
T KOG0658|consen  176 LVKGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTREDIKSMNP  255 (364)
T ss_pred             eccCCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHHHHhhcCc
Confidence            522                       267899999999999999999998887554444433332322222222111111


Q ss_pred             --hhhcCCcCCC-----CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          538 --RNWMDPNLES-----FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       538 --~~~~dp~l~~-----~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                        .+.-.|.+..     .+......+.++|+.+++..+|.+|.++.|++.+
T Consensus       256 ~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h  306 (364)
T KOG0658|consen  256 NYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALAH  306 (364)
T ss_pred             ccccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhcc
Confidence              1222233321     1333455578999999999999999999998874

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.97  E-value=2.7e-31  Score=278.26  Aligned_cols=203  Identities=23%  Similarity=0.305  Sum_probs=163.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||+|.++.          .+.+|++++++++|+||+++.+++... +..++||||+++|+|.+++.
T Consensus         9 g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~   87 (323)
T cd05571           9 GKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTH-DRLCFVMEYANGGELFFHLS   87 (323)
T ss_pred             eEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcC-CEEEEEEeCCCCCcHHHHHH
Confidence            58999987  689999998863          245799999999999999999988754 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ...          .+++.++..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...        
T Consensus        88 ~~~----------~~~~~~~~~~~~qi~~~L~~lH~~~---ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~  154 (323)
T cd05571          88 RER----------VFSEDRARFYGAEIVSALGYLHSCD---VVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATMKT  154 (323)
T ss_pred             HcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---eEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCcccc
Confidence            643          3899999999999999999999998   9999999999999999999999999986421        


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ..++.++|||||||++|||++|+.||......   ....    .         ...  -+.    
T Consensus       155 ~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~---~~~~----~---------~~~--~~~----  212 (323)
T cd05571         155 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE---KLFE----L---------ILM--EEI----  212 (323)
T ss_pred             eecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCHH---HHHH----H---------HHc--CCC----
Confidence                           12456899999999999999999999653311   0000    0         000  011    


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRP-----NMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~~  581 (615)
                      .++......+.+++.+|++.||++||     ++.|++++
T Consensus       213 ~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h  251 (323)
T cd05571         213 RFPRTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIMEH  251 (323)
T ss_pred             CCCCCCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHHcC
Confidence            22333445678999999999999999     79998764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.7e-31  Score=275.64  Aligned_cols=203  Identities=21%  Similarity=0.307  Sum_probs=162.8

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||+|+++.          .+.+|++++++++||||+++++++.+. ...++||||+++|+|.+++.
T Consensus        15 g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~   93 (291)
T cd05612          15 GRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQ-RFLYMLMEYVPGGELFSYLR   93 (291)
T ss_pred             eEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccC-CeEEEEEeCCCCCCHHHHHH
Confidence            48999987  589999999852          356799999999999999999987654 47899999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------  483 (615)
                      ...          .+++.....++.|++.||+|||+++   ++||||||+|||++.++.+||+|||+++....       
T Consensus        94 ~~~----------~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~g  160 (291)
T cd05612          94 NSG----------RFSNSTGLFYASEIVCALEYLHSKE---IVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTWTLCG  160 (291)
T ss_pred             HcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHeEECCCCCEEEEecCcchhccCCcccccC
Confidence            654          2889999999999999999999998   99999999999999999999999999864321       


Q ss_pred             -------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          484 -------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       484 -------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                   ..+.++|||||||++|||++|+.||......+   ..   ...              ....  ..++
T Consensus       161 t~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~~---~~---~~i--------------~~~~--~~~~  218 (291)
T cd05612         161 TPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFG---IY---EKI--------------LAGK--LEFP  218 (291)
T ss_pred             ChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---HH---HHH--------------HhCC--cCCC
Confidence                         24568999999999999999999987543211   11   000              0000  1122


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCC-----HHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPN-----MAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPs-----m~ev~~~  581 (615)
                      ......+.+++++|++.||.+||+     +.|++++
T Consensus       219 ~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h  254 (291)
T cd05612         219 RHLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNH  254 (291)
T ss_pred             ccCCHHHHHHHHHHcCCCHHHccCCccCCHHHHhcC
Confidence            223446789999999999999995     7887765

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.97  E-value=6.7e-31  Score=268.91  Aligned_cols=212  Identities=22%  Similarity=0.377  Sum_probs=166.5

Q ss_pred             ceEEEEEE--CCe----EEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGK----VLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~----~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      +.||+|.+  +|+    .||+|.++        ..+.+|+.++..++|+||+++++++..  ...++++||+++|+|.++
T Consensus        21 g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~--~~~~l~~~~~~~g~l~~~   98 (279)
T cd05109          21 GTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLT--STVQLVTQLMPYGCLLDY   98 (279)
T ss_pred             ceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC--CCcEEEEEcCCCCCHHHH
Confidence            58999986  554    48999875        246789999999999999999999864  357899999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      ++....         .+++..++.++.|++.||+|||+.+   ++||||||+|||+++++.+||+|||+++...      
T Consensus        99 l~~~~~---------~~~~~~~~~~~~qi~~~L~~lH~~~---iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~~~  166 (279)
T cd05109          99 VRENKD---------RIGSQDLLNWCVQIAKGMSYLEEVR---LVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEY  166 (279)
T ss_pred             HhhccC---------CCCHHHHHHHHHHHHHHHHHHHHCC---eeccccccceEEEcCCCcEEECCCCceeeccccccee
Confidence            976432         3899999999999999999999998   9999999999999999999999999986431      


Q ss_pred             -------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          483 -------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       483 -------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                         ..++.++||||||+++|||++ |+.|+.......   .    ..          .+.....
T Consensus       167 ~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~---~----~~----------~~~~~~~  229 (279)
T cd05109         167 HADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPARE---I----PD----------LLEKGER  229 (279)
T ss_pred             ecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHH---H----HH----------HHHCCCc
Confidence                               113457899999999999998 888886433211   0    00          1111111


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      +    ..+......+.+++..||+.||++||++.|+++.|..+....
T Consensus       230 ~----~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~~  272 (279)
T cd05109         230 L----PQPPICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRMARDP  272 (279)
T ss_pred             C----CCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhcCC
Confidence            1    112233456889999999999999999999999998775443

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.97  E-value=6.3e-31  Score=269.68  Aligned_cols=217  Identities=24%  Similarity=0.432  Sum_probs=166.4

Q ss_pred             ceEEEEEE------CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI------DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~------~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      +.||+|..      .++.+|+|.++        ..+.+|++++++++|+||+++++++... ...++||||+++|+|.++
T Consensus        19 g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-~~~~lv~e~~~~~~L~~~   97 (283)
T cd05090          19 GKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQE-QPVCMLFEYLNQGDLHEF   97 (283)
T ss_pred             cceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecC-CceEEEEEcCCCCcHHHH
Confidence            48999985      45789999986        3577899999999999999999998754 478999999999999999


Q ss_pred             hccCCCCCC-------CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC
Q 047629          409 LHPKSKSSS-------SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA  481 (615)
Q Consensus       409 L~~~~~~~~-------~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  481 (615)
                      +........       .......+++.+++.++.|++.||.|||+++   ++||||||+|||+++++.+||+|||+++..
T Consensus        98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~---i~H~dlkp~nili~~~~~~kl~dfg~~~~~  174 (283)
T cd05090          98 LIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHF---FVHKDLAARNILIGEQLHVKISDLGLSREI  174 (283)
T ss_pred             HHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcC---eehhccccceEEEcCCCcEEeccccccccc
Confidence            864321100       0000124889999999999999999999998   999999999999999999999999998542


Q ss_pred             C-------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHH
Q 047629          482 T-------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREE  535 (615)
Q Consensus       482 ~-------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~  535 (615)
                      .                         ...+.++||||||+++|||++ |..|+......   .    +.+          
T Consensus       175 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~~---~----~~~----------  237 (283)
T cd05090         175 YSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQ---E----VIE----------  237 (283)
T ss_pred             cCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHH---H----HHH----------
Confidence            1                         124568999999999999999 88888643311   0    000          


Q ss_pred             HHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHh
Q 047629          536 RLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSV  584 (615)
Q Consensus       536 ~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~  584 (615)
                      .+.....+    ..+......+.+++.+||+.||++||++.+|.+.|..
T Consensus       238 ~~~~~~~~----~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05090         238 MVRKRQLL----PCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRLRS  282 (283)
T ss_pred             HHHcCCcC----CCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence            01100011    1223334568899999999999999999999998853

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.97  E-value=5.6e-31  Score=270.03  Aligned_cols=226  Identities=27%  Similarity=0.395  Sum_probs=167.3

Q ss_pred             ceEEEEEE------CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCC-CcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI------DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQ-GNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~------~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~-~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||++.+      +++.||+|+++       +.+.+|++++++++|+||+++.+++...+ ...++|+||+++|+|.++
T Consensus        18 g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~   97 (284)
T cd05081          18 GSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDY   97 (284)
T ss_pred             ceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceEEEEEecCCCCHHHH
Confidence            58999874      47899999985       25778999999999999999999875433 358999999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      +.....         .++|..+..++.|++.||+|||+++   ++||||||+||++++++.+||+|||+++...      
T Consensus        98 l~~~~~---------~l~~~~~~~~~~~l~~aL~~LH~~~---i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~  165 (284)
T cd05081          98 LQKHRE---------RLDHRKLLLYASQICKGMEYLGSKR---YVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYY  165 (284)
T ss_pred             HHhcCc---------CCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCCHhhEEECCCCeEEECCCcccccccCCCcce
Confidence            975432         3899999999999999999999998   9999999999999999999999999986431      


Q ss_pred             --------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          483 --------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       483 --------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                          ...+.++|||||||++|||++|..+.......    ....+...... ......+.+.+.
T Consensus       166 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~  240 (284)
T cd05081         166 KVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAE----FMRMMGNDKQG-QMIVYHLIELLK  240 (284)
T ss_pred             eecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchh----hhhhccccccc-ccchHHHHHHHh
Confidence                                11345799999999999999988765432210    00000000000 000001111111


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      .......+......+.+++.+||+.+|++||||+||++.|+.+
T Consensus       241 ~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~  283 (284)
T cd05081         241 NNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAI  283 (284)
T ss_pred             cCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHhc
Confidence            1111112233445689999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.97  E-value=9.3e-31  Score=266.13  Aligned_cols=215  Identities=25%  Similarity=0.385  Sum_probs=166.9

Q ss_pred             ceEEEEEE--C---CeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCC-----cEEEEEeecCCC
Q 047629          343 KSVYRATI--D---GKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQG-----NRFLVYEYAENG  403 (615)
Q Consensus       343 ~~Vy~~~~--~---g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~-----~~~lV~E~~~~G  403 (615)
                      |.||+|..  +   +..||||+++         ..+.+|++.+++++|+||+++++++...+.     ..++++||+++|
T Consensus        13 g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~   92 (273)
T cd05035          13 GSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPKPMVILPFMKHG   92 (273)
T ss_pred             ceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCcccEEEEeccCCC
Confidence            48999987  2   3679999875         246789999999999999999998865332     268999999999


Q ss_pred             CHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-
Q 047629          404 SLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-  482 (615)
Q Consensus       404 sL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-  482 (615)
                      +|..++........    ...+++..+..++.|++.||.|||+.+   ++||||||+||++++++.+||+|||+++... 
T Consensus        93 ~l~~~l~~~~~~~~----~~~~~~~~~~~~~~~i~~aL~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~  165 (273)
T cd05035          93 DLHSFLLYSRLGGL----PEKLPLQTLLKFMVDIALGMEYLSNRN---FIHRDLAARNCMLREDMTVCVADFGLSKKIYS  165 (273)
T ss_pred             CHHHHHHHhhccCC----cccCCHHHHHHHHHHHHHHHHHHHhCC---eeccccchheEEECCCCeEEECCccceeeccc
Confidence            99999865432111    124899999999999999999999987   9999999999999999999999999986421 


Q ss_pred             ------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHH
Q 047629          483 ------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERL  537 (615)
Q Consensus       483 ------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  537 (615)
                                              ...+.++||||||+++|||++ |..|+....+.+   ..+              .+
T Consensus       166 ~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~~~---~~~--------------~~  228 (273)
T cd05035         166 GDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHE---IYD--------------YL  228 (273)
T ss_pred             cccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCHHH---HHH--------------HH
Confidence                                    124568999999999999999 888886533211   000              01


Q ss_pred             hhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          538 RNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       538 ~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      .....+    ..+......+.+++.+||+.||++||++.|+++.|+.+
T Consensus       229 ~~~~~~----~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~  272 (273)
T cd05035         229 RHGNRL----KQPEDCLDELYDLMYSCWRADPKDRPTFTKLREVLENI  272 (273)
T ss_pred             HcCCCC----CCCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            111111    12334455789999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.97  E-value=1.1e-30  Score=267.43  Aligned_cols=219  Identities=22%  Similarity=0.377  Sum_probs=170.7

Q ss_pred             ceEEEEEE-C-----CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI-D-----GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~-~-----g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      +.||+|.. +     +..|++|+++        ..+.+|+.++++++|+||+++++++...+...++++||+++|+|.++
T Consensus        20 g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~~~~~~~L~~~   99 (280)
T cd05043          20 GRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPPFVLYPYMNWGNLKLF   99 (280)
T ss_pred             ceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCCEEEEEcCCCCcHHHH
Confidence            48999997 3     5889999885        23678999999999999999999987655578999999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      +........  .....+++.++..++.|++.||+|||+++   ++||||||+||++++++.+||+|||+++...      
T Consensus       100 l~~~~~~~~--~~~~~l~~~~~~~i~~~i~~~l~~LH~~~---i~H~di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~~  174 (280)
T cd05043         100 LQQCRLGEA--NNPQALSTQQLVHMAIQIACGMSYLHKRG---VIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHC  174 (280)
T ss_pred             HHhcccccc--ccccCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccCHhhEEEcCCCcEEECCCCCcccccCCceEE
Confidence            976432110  01124899999999999999999999987   9999999999999999999999999987431      


Q ss_pred             -------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          483 -------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       483 -------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                         ...+.++||||||+++||+++ |+.|+......   ....              .+..-..
T Consensus       175 ~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~---~~~~--------------~~~~~~~  237 (280)
T cd05043         175 LGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPF---EMAA--------------YLKDGYR  237 (280)
T ss_pred             eCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCHH---HHHH--------------HHHcCCC
Confidence                               113568999999999999999 99998653311   1111              0111011


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhccc
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~  587 (615)
                      +.    .+......+.+++.+||+.||++|||+.|+++.|+.+.+
T Consensus       238 ~~----~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~~  278 (280)
T cd05043         238 LA----QPINCPDELFAVMACCWALDPEERPSFSQLVQCLTDFHA  278 (280)
T ss_pred             CC----CCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence            11    122234568999999999999999999999999987754

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.97  E-value=4.9e-31  Score=283.88  Aligned_cols=221  Identities=24%  Similarity=0.352  Sum_probs=168.1

Q ss_pred             ceEEEEEEC-------CeEEEEEEcc--------HHHHHHHHHHHhcC-CCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATID-------GKVLAVKKIK--------EDVTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~~-------g~~vAvK~~~--------~~~~~Ei~~l~~l~-H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      |.||+|+..       +..||||+++        +.+.+|+++|++++ ||||++++|+|.+. +..++||||+++|+|.
T Consensus        51 G~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~-~~~~lv~Ey~~~g~L~  129 (400)
T cd05105          51 GKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKS-GPIYIITEYCFYGDLV  129 (400)
T ss_pred             ceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccC-CceEEEEEecCCCcHH
Confidence            489999852       3469999985        34778999999996 99999999998754 4799999999999999


Q ss_pred             HhhccCCCCCC-------------------------------------------C-------------------------
Q 047629          407 KWLHPKSKSSS-------------------------------------------S-------------------------  418 (615)
Q Consensus       407 ~~L~~~~~~~~-------------------------------------------~-------------------------  418 (615)
                      ++|+.......                                           .                         
T Consensus       130 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (400)
T cd05105         130 NYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIKEASKYSDIQRSNYD  209 (400)
T ss_pred             HHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhhhhhhhhhhcccCccc
Confidence            99875321000                                           0                         


Q ss_pred             ------------------CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCC
Q 047629          419 ------------------SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAP  480 (615)
Q Consensus       419 ------------------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  480 (615)
                                        ......+++.+++.++.|++.||.|||+.+   ++||||||+|||++.++.+||+|||+++.
T Consensus       210 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivH~dikp~Nill~~~~~~kL~DfGla~~  286 (400)
T cd05105         210 RPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKN---CVHRDLAARNVLLAQGKIVKICDFGLARD  286 (400)
T ss_pred             ccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChHhEEEeCCCEEEEEeCCccee
Confidence                              000124889999999999999999999988   99999999999999999999999999853


Q ss_pred             CC-------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHH
Q 047629          481 AT-------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKRE  534 (615)
Q Consensus       481 ~~-------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~  534 (615)
                      ..                         ..++.++|||||||++|||++ |+.|+........  ...             
T Consensus       287 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~--~~~-------------  351 (400)
T cd05105         287 IMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDST--FYN-------------  351 (400)
T ss_pred             ccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhHH--HHH-------------
Confidence            21                         124568999999999999997 8888865332111  000             


Q ss_pred             HHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhccc
Q 047629          535 ERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       535 ~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~  587 (615)
                       .+..-..+    ..+......+.+++.+||+.||++||++.+|.+.|+.+.+
T Consensus       352 -~~~~~~~~----~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~~  399 (400)
T cd05105         352 -KIKSGYRM----AKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESLLP  399 (400)
T ss_pred             -HHhcCCCC----CCCccCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHHcC
Confidence             01111111    1223344568999999999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.97  E-value=1.4e-30  Score=261.71  Aligned_cols=207  Identities=26%  Similarity=0.407  Sum_probs=166.2

Q ss_pred             ceEEEEEE-CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      +.||+|.. +++.+|+|.++        ..+.+|++++++++|+||+++++++... +..++||||+++|+|.+++....
T Consensus         9 g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~~~   87 (250)
T cd05085           9 GEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQR-QPIYIVMELVPGGDFLSFLRKKK   87 (250)
T ss_pred             ceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecC-CccEEEEECCCCCcHHHHHHhcC
Confidence            48999987 67889999875        2467899999999999999999998754 47899999999999999997543


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                      .         .++|.++..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||++....           
T Consensus        88 ~---------~~~~~~~~~~~~~i~~~l~~lH~~~---~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~  155 (250)
T cd05085          88 D---------ELKTKQLVKFALDAAAGMAYLESKN---CIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQ  155 (250)
T ss_pred             C---------CCCHHHHHHHHHHHHHHHHHHHhCC---eeecccChheEEEcCCCeEEECCCccceeccccccccCCCCC
Confidence            2         3889999999999999999999988   9999999999999999999999999885321           


Q ss_pred             -------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          483 -------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       483 -------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                   ...+.++||||||+++||+++ |+.|+........   .              ..+.....    ..
T Consensus       156 ~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~~---~--------------~~~~~~~~----~~  214 (250)
T cd05085         156 IPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQA---R--------------EQVEKGYR----MS  214 (250)
T ss_pred             CcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHHHH---H--------------HHHHcCCC----CC
Confidence                         113457999999999999999 9989865432110   0              01111111    12


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      .+......+.+++.+|++.+|++||++.|+++.|.
T Consensus       215 ~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         215 CPQKCPDDVYKVMQRCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             CCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence            23334567899999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=5.4e-31  Score=274.61  Aligned_cols=203  Identities=19%  Similarity=0.252  Sum_probs=161.1

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +++.||+|.++.          .+.+|+.++.+++||||+++++++.+. +..++||||+++|+|.+++.
T Consensus         7 g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~g~L~~~l~   85 (312)
T cd05585           7 GKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSP-EKLYLVLAFINGGELFHHLQ   85 (312)
T ss_pred             eEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecC-CeEEEEEcCCCCCcHHHHHH
Confidence            48999987  578999998863          245799999999999999999988754 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ...          .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...        
T Consensus        86 ~~~----------~~~~~~~~~~~~qi~~~l~~lH~~~---i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~  152 (312)
T cd05585          86 REG----------RFDLSRARFYTAELLCALENLHKFN---VIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNT  152 (312)
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---eEeCCCCHHHeEECCCCcEEEEECcccccCccCCCcccc
Confidence            643          2889999999999999999999998   9999999999999999999999999986421        


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ..++.++|||||||++|||++|+.||......   ..   ...          ....  ..    
T Consensus       153 ~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~~---~~---~~~----------~~~~--~~----  210 (312)
T cd05585         153 FCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVN---EM---YRK----------ILQE--PL----  210 (312)
T ss_pred             ccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCHH---HH---HHH----------HHcC--CC----
Confidence                           11456899999999999999999999753310   00   010          0110  11    


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCC---HHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPN---MAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPs---m~ev~~~  581 (615)
                      .++......+.+++..||+.||.+||+   +.|++.+
T Consensus       211 ~~~~~~~~~~~~li~~~L~~dp~~R~~~~~~~e~l~h  247 (312)
T cd05585         211 RFPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQEIKNH  247 (312)
T ss_pred             CCCCcCCHHHHHHHHHHcCCCHHHcCCCCCHHHHHcC
Confidence            123333456789999999999999985   5666553

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.97  E-value=1.2e-30  Score=263.96  Aligned_cols=211  Identities=27%  Similarity=0.404  Sum_probs=163.4

Q ss_pred             ceEEEEEE-----CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI-----DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~-----~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      +.||+|..     ++..+|+|++.        ..+.+|+.++++++|+||+++++++...++..++++||+++|+|.+++
T Consensus         9 g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~~   88 (262)
T cd05058           9 GCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMKHGDLRNFI   88 (262)
T ss_pred             ceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCCCCCHHHHH
Confidence            48999986     23579999874        246679999999999999999998876566689999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      .....         .+++..++.++.|++.||+|||+.+   ++||||||+|||+++++.+||+|||+++...       
T Consensus        89 ~~~~~---------~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~  156 (262)
T cd05058          89 RSETH---------NPTVKDLIGFGLQVAKGMEYLASKK---FVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSV  156 (262)
T ss_pred             HhcCC---------CCCHHHHHHHHHHHHHHHHHHHhCC---ccccccCcceEEEcCCCcEEECCccccccccCCcceee
Confidence            75432         2678889999999999999999987   9999999999999999999999999986321       


Q ss_pred             --------------------CCCCCcccchhHHHHHHHHHcCCC-CCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 --------------------NDVMPKFDVFAFGVVLLELLSGKK-ATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 --------------------~~~~~k~DV~SfGvvl~ElltG~~-p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                          ...+.++||||||+++|||++|+. |+.....   ....   .           .+....
T Consensus       157 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~---~~~~---~-----------~~~~~~  219 (262)
T cd05058         157 HNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDS---FDIT---V-----------YLLQGR  219 (262)
T ss_pred             cccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCCH---HHHH---H-----------HHhcCC
Confidence                                113458999999999999999654 5543221   1111   0           011111


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcc
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLT  586 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~  586 (615)
                      .+..    +...+..+.+++..||+.+|++||++.||++.|+.+.
T Consensus       220 ~~~~----~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~  260 (262)
T cd05058         220 RLLQ----PEYCPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQIF  260 (262)
T ss_pred             CCCC----CCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHh
Confidence            1111    1222346889999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=5.3e-31  Score=277.19  Aligned_cols=211  Identities=19%  Similarity=0.279  Sum_probs=165.2

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||+|..  +|+.||||+++.          .+.+|++++.+++|+||+++++++.+. ...++||||+++|+|.+++.
T Consensus        15 g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~-~~~~lv~e~~~g~~L~~~l~   93 (333)
T cd05600          15 GQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDD-EYLYLAMEYVPGGDFRTLLN   93 (333)
T ss_pred             eEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcC-CEEEEEEeCCCCCCHHHHHH
Confidence            58999998  589999999863          256799999999999999999998754 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ...          .+++.+...++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...        
T Consensus        94 ~~~----------~l~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~~~~~~~g  160 (333)
T cd05600          94 NLG----------VLSEDHARFYMAEMFEAVDALHELG---YIHRDLKPENFLIDASGHIKLTDFGLSKGIVTYANSVVG  160 (333)
T ss_pred             HcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEECCCCCEEEEeCcCCcccccccCCccc
Confidence            543          3889999999999999999999998   9999999999999999999999999986431        


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  ..++.++|||||||++|||++|+.||......+   .+..+..           ....+.........
T Consensus       161 t~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~---~~~~i~~-----------~~~~~~~~~~~~~~  226 (333)
T cd05600         161 SPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNE---TWENLKY-----------WKETLQRPVYDDPR  226 (333)
T ss_pred             CccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHHH---HHHHHHh-----------ccccccCCCCCccc
Confidence                        124678999999999999999999997543211   1111100           00111110000001


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ......+.+++.+|+..+|.+||+++|++++
T Consensus       227 ~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h  257 (333)
T cd05600         227 FNLSDEAWDLITKLINDPSRRFGSLEDIKNH  257 (333)
T ss_pred             cccCHHHHHHHHHHhhChhhhcCCHHHHHhC
Confidence            1234567899999999999999999999976

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.97  E-value=4.3e-31  Score=280.22  Aligned_cols=203  Identities=24%  Similarity=0.370  Sum_probs=158.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||++..  +|+.||||.+.        ..+.+|++++++++|+||+++++++.+ ++..++||||+++|+|.+..   
T Consensus        88 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e~~~~~~L~~~~---  163 (353)
T PLN00034         88 GTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDH-NGEIQVLLEFMDGGSLEGTH---  163 (353)
T ss_pred             eEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEecc-CCeEEEEEecCCCCcccccc---
Confidence            58999987  68999999884        347789999999999999999999865 45799999999999986432   


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC--------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND--------  484 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~--------  484 (615)
                                 .+.+..+..++.||+.||+|||+++   |+||||||+|||+++++.+||+|||+++.....        
T Consensus       164 -----------~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~  229 (353)
T PLN00034        164 -----------IADEQFLADVARQILSGIAYLHRRH---IVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSV  229 (353)
T ss_pred             -----------cCCHHHHHHHHHHHHHHHHHHHHCC---EeecCCCHHHEEEcCCCCEEEcccccceecccccccccccc
Confidence                       2567788899999999999999998   999999999999999999999999998642110        


Q ss_pred             --------------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCc
Q 047629          485 --------------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPN  544 (615)
Q Consensus       485 --------------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~  544 (615)
                                          .+.++|||||||++|||++|+.||......+...+.    ..          +.....+ 
T Consensus       230 gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~----~~----------~~~~~~~-  294 (353)
T PLN00034        230 GTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWASLM----CA----------ICMSQPP-  294 (353)
T ss_pred             cCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCccHHHHH----HH----------HhccCCC-
Confidence                                123799999999999999999999743322111110    00          0000011 


Q ss_pred             CCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          545 LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       545 l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                         ..+......+.+|+.+||+.||++||++.|++++
T Consensus       295 ---~~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~h  328 (353)
T PLN00034        295 ---EAPATASREFRHFISCCLQREPAKRWSAMQLLQH  328 (353)
T ss_pred             ---CCCCccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence               1222344568999999999999999999999986

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.97  E-value=9.1e-31  Score=269.72  Aligned_cols=219  Identities=26%  Similarity=0.442  Sum_probs=168.2

Q ss_pred             ceEEEEEEC-------CeEEEEEEccH--------HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATID-------GKVLAVKKIKE--------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~~-------g~~vAvK~~~~--------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      |.||++...       ...+|+|.++.        ++.+|++++.++ +|+||+++++++.. ++..+++|||+++|+|.
T Consensus        26 g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~-~~~~~li~e~~~~~~L~  104 (293)
T cd05053          26 GQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQ-EGPLYVVVEYAAHGNLR  104 (293)
T ss_pred             ccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcC-CCCeEEEEEeCCCCcHH
Confidence            489998862       26799998752        367899999999 89999999999875 45799999999999999


Q ss_pred             HhhccCCCCCCCC------CcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCC
Q 047629          407 KWLHPKSKSSSSS------GSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAP  480 (615)
Q Consensus       407 ~~L~~~~~~~~~~------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  480 (615)
                      +++..........      .....++|..++.++.|++.||+|||+.+   |+||||||+||+++.++.+||+|||+++.
T Consensus       105 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~---ivH~dlkp~Nil~~~~~~~kL~Dfg~~~~  181 (293)
T cd05053         105 DFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKK---CIHRDLAARNVLVTEDHVMKIADFGLARD  181 (293)
T ss_pred             HHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCC---ccccccceeeEEEcCCCeEEeCccccccc
Confidence            9997542110000      01124899999999999999999999987   99999999999999999999999999864


Q ss_pred             CC-------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHH
Q 047629          481 AT-------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKRE  534 (615)
Q Consensus       481 ~~-------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~  534 (615)
                      ..                         ...+.++|||||||++|||++ |..|+......+   ..    .         
T Consensus       182 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~---~~----~---------  245 (293)
T cd05053         182 IHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEE---LF----K---------  245 (293)
T ss_pred             cccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCHHH---HH----H---------
Confidence            21                         113457999999999999998 888886433111   00    0         


Q ss_pred             HHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcc
Q 047629          535 ERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLT  586 (615)
Q Consensus       535 ~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~  586 (615)
                       .+.    .......+......+.+|+.+||+.||++||||.|+++.|+.+.
T Consensus       246 -~~~----~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~~  292 (293)
T cd05053         246 -LLK----EGYRMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRML  292 (293)
T ss_pred             -HHH----cCCcCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHhh
Confidence             000    11111233344567899999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.97  E-value=1.2e-30  Score=264.10  Aligned_cols=208  Identities=27%  Similarity=0.410  Sum_probs=166.7

Q ss_pred             ceEEEEEE-CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      |.||++.. +++.||+|.+.      .++.+|+.++++++|+|++++++++.  +...++++||+++|+|.+++......
T Consensus        20 g~v~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~--~~~~~~v~e~~~~~~L~~~~~~~~~~   97 (260)
T cd05067          20 GEVWMGYYNGHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVVT--QEPIYIITEYMENGSLVDFLKTPEGI   97 (260)
T ss_pred             ceEEeeecCCCceEEEEEecCCCCcHHHHHHHHHHHHhcCCcCeeeEEEEEc--cCCcEEEEEcCCCCCHHHHHHhcCCC
Confidence            58999988 77999999886      36789999999999999999999864  34689999999999999998654321


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------------  482 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------------  482 (615)
                              .+++.++..++.|++.||+|||+.+   ++||||||+||++++++.++++|||++....             
T Consensus        98 --------~~~~~~~~~i~~~i~~al~~LH~~~---i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~  166 (260)
T cd05067          98 --------KLTINKLIDMAAQIAEGMAFIERKN---YIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFP  166 (260)
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHhcCC---eecccccHHhEEEcCCCCEEEccCcceeecCCCCcccccCCccc
Confidence                    3899999999999999999999987   9999999999999999999999999985432             


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                 ...+.++||||||+++||+++ |+.|+......+.   ..              .+.....+    ..+
T Consensus       167 ~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~---~~--------------~~~~~~~~----~~~  225 (260)
T cd05067         167 IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEV---IQ--------------NLERGYRM----PRP  225 (260)
T ss_pred             ccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCChHHH---HH--------------HHHcCCCC----CCC
Confidence                       113458999999999999999 9999865432111   10              01111111    112


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHh
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLSV  584 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~  584 (615)
                      ......+.+++.+|++.+|++||++++++..|+.
T Consensus       226 ~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         226 DNCPEELYELMRLCWKEKPEERPTFEYLRSVLED  259 (260)
T ss_pred             CCCCHHHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence            2334568999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.97  E-value=1.5e-30  Score=265.16  Aligned_cols=219  Identities=29%  Similarity=0.500  Sum_probs=166.6

Q ss_pred             ceEEEEEE--CCe--EEEEEEcc--------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGK--VLAVKKIK--------EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~--~vAvK~~~--------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      +.||+|..  +|.  .+|+|.++        ..+.+|++++.++ +|+||+++++++... +..++||||+++|+|.+++
T Consensus         9 g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~i   87 (270)
T cd05047           9 GQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHR-GYLYLAIEYAPHGNLLDFL   87 (270)
T ss_pred             ceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecC-CCceEEEEeCCCCcHHHHH
Confidence            48999987  343  57888875        2466899999999 899999999998754 4789999999999999999


Q ss_pred             ccCCCCCCC------CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC--
Q 047629          410 HPKSKSSSS------SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA--  481 (615)
Q Consensus       410 ~~~~~~~~~------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~--  481 (615)
                      .........      ......+++.++..++.|++.||+|||+++   ++||||||+||++++++.+|++|||+++..  
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~---i~H~dikp~nili~~~~~~kl~dfgl~~~~~~  164 (270)
T cd05047          88 RKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVGENYVAKIADFGLSRGQEV  164 (270)
T ss_pred             HhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccccceEEEcCCCeEEECCCCCccccch
Confidence            764321000      011124889999999999999999999987   999999999999999999999999998421  


Q ss_pred             --------------------CCCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhh
Q 047629          482 --------------------TNDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNW  540 (615)
Q Consensus       482 --------------------~~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  540 (615)
                                          ....+.++||||||+++|||++ |+.||......+   ...              .+.  
T Consensus       165 ~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~---~~~--------------~~~--  225 (270)
T cd05047         165 YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE---LYE--------------KLP--  225 (270)
T ss_pred             hhhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCHHH---HHH--------------HHh--
Confidence                                1124568999999999999997 999986433111   000              010  


Q ss_pred             cCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcc
Q 047629          541 MDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLT  586 (615)
Q Consensus       541 ~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~  586 (615)
                        .....+.+......+.+++.+||+.||.+||++.|++..|..+.
T Consensus       226 --~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~~  269 (270)
T cd05047         226 --QGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRML  269 (270)
T ss_pred             --CCCCCCCCCcCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHhh
Confidence              11111122233446889999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=4.3e-31  Score=270.97  Aligned_cols=212  Identities=27%  Similarity=0.348  Sum_probs=163.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------------------HHHHHHHHHHhcCCCCcccEEEEEEcCC-CcEEEEEe
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------------------DVTEELRILQRINHANLVKLMGVSSDSQ-GNRFLVYE  398 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------------------~~~~Ei~~l~~l~H~niv~l~g~~~~~~-~~~~lV~E  398 (615)
                      |.|-.+..  +|+.||||.+.+                     .+.+||.+|++++|+|||+|+.+..+.. ..+|||+|
T Consensus       111 GkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~LiEvLDDP~s~~~YlVle  190 (576)
T KOG0585|consen  111 GKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLIEVLDDPESDKLYLVLE  190 (576)
T ss_pred             ceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEEEeecCcccCceEEEEE
Confidence            45655654  799999998842                     4678999999999999999999865432 35899999


Q ss_pred             ecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCC
Q 047629          399 YAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA  478 (615)
Q Consensus       399 ~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  478 (615)
                      ||..|.+... ....         ..|+..+.++++.++..||+|||.++   ||||||||+|+||++++++||+|||.+
T Consensus       191 y~s~G~v~w~-p~d~---------~els~~~Ar~ylrDvv~GLEYLH~Qg---iiHRDIKPsNLLl~~~g~VKIsDFGVs  257 (576)
T KOG0585|consen  191 YCSKGEVKWC-PPDK---------PELSEQQARKYLRDVVLGLEYLHYQG---IIHRDIKPSNLLLSSDGTVKISDFGVS  257 (576)
T ss_pred             eccCCccccC-CCCc---------ccccHHHHHHHHHHHHHHHHHHHhcC---eeccccchhheEEcCCCcEEeecccee
Confidence            9999887432 1111         12899999999999999999999998   999999999999999999999999987


Q ss_pred             CCCCC--------------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHH
Q 047629          479 APATN--------------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREV  526 (615)
Q Consensus       479 ~~~~~--------------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~  526 (615)
                      .....                                ....+.||||+||+||-|+.|+.||.....   ..        
T Consensus       258 ~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~---~~--------  326 (576)
T KOG0585|consen  258 NEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFE---LE--------  326 (576)
T ss_pred             eecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccchH---HH--------
Confidence            53300                                013478999999999999999999975331   11        


Q ss_pred             HhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhccc
Q 047629          527 LKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       527 ~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~  587 (615)
                               ...+++...|.-.-..+....+.+|++++++.||+.|.+..+|..+...-..
T Consensus       327 ---------l~~KIvn~pL~fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpwvt~~  378 (576)
T KOG0585|consen  327 ---------LFDKIVNDPLEFPENPEINEDLKDLIKRLLEKDPEQRITLPDIKLHPWVTRD  378 (576)
T ss_pred             ---------HHHHHhcCcccCCCcccccHHHHHHHHHHhhcChhheeehhhheecceeccC
Confidence                     1223333333211122456678999999999999999999999988765544

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.97  E-value=1.1e-30  Score=270.27  Aligned_cols=222  Identities=31%  Similarity=0.499  Sum_probs=169.0

Q ss_pred             ceEEEEEE--CCe--EEEEEEccH--------HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGK--VLAVKKIKE--------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~--~vAvK~~~~--------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|..  +|.  .+++|.++.        .+.+|++++.++ +||||+++++++.+ .+..++|+||+++|+|.+++
T Consensus        16 g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~-~~~~~lv~e~~~~~~L~~~l   94 (297)
T cd05089          16 GQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACEN-RGYLYIAIEYAPYGNLLDFL   94 (297)
T ss_pred             ceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEcc-CCcceEEEEecCCCcHHHHH
Confidence            48999987  333  478888762        477899999999 79999999999865 44789999999999999999


Q ss_pred             ccCCCCCCC------CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-
Q 047629          410 HPKSKSSSS------SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-  482 (615)
Q Consensus       410 ~~~~~~~~~------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-  482 (615)
                      .........      ......+++.++..++.|++.||+|||+++   ++||||||+|||+++++.+||+|||++.... 
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~---ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~  171 (297)
T cd05089          95 RKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQ---FIHRDLAARNVLVGENLASKIADFGLSRGEEV  171 (297)
T ss_pred             HhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCcCCcceEEECCCCeEEECCcCCCccccc
Confidence            764321100      001124899999999999999999999987   9999999999999999999999999874221 


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhh
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNW  540 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  540 (615)
                                           ..++.++|||||||++|||++ |+.||......+   ...              .+..-
T Consensus       172 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~~~---~~~--------------~~~~~  234 (297)
T cd05089         172 YVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAE---LYE--------------KLPQG  234 (297)
T ss_pred             eeccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHH---HHH--------------HHhcC
Confidence                                 124568999999999999998 999986543211   010              01111


Q ss_pred             cCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          541 MDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       541 ~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      ..+    ..+......+.+++.+||+.+|.+||++.++++.|..+.+..
T Consensus       235 ~~~----~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~~  279 (297)
T cd05089         235 YRM----EKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEAR  279 (297)
T ss_pred             CCC----CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhh
Confidence            111    122333456889999999999999999999999998777543

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.97  E-value=1.3e-30  Score=268.23  Aligned_cols=222  Identities=26%  Similarity=0.410  Sum_probs=169.9

Q ss_pred             ceEEEEEE-------CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI-------DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~-------~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      +.||++..       ++..+|+|.++       +.+.+|++++++++|+||+++++++... +..++||||+++|+|.++
T Consensus        19 ~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~   97 (288)
T cd05093          19 GKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEG-DPLIMVFEYMKHGDLNKF   97 (288)
T ss_pred             eeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecC-CccEEEEEcCCCCCHHHH
Confidence            47998874       34668999885       2477899999999999999999998754 478999999999999999


Q ss_pred             hccCCCCCC---CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---
Q 047629          409 LHPKSKSSS---SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---  482 (615)
Q Consensus       409 L~~~~~~~~---~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---  482 (615)
                      +........   .......++|.+++.++.|++.||+|||+++   ++||||||+|||+++++.+||+|||+++...   
T Consensus        98 i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~---i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~  174 (288)
T cd05093          98 LRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTD  174 (288)
T ss_pred             HHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccCcceEEEccCCcEEeccCCccccccCCc
Confidence            975432100   0011124899999999999999999999998   9999999999999999999999999986321   


Q ss_pred             ----------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhh
Q 047629          483 ----------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRN  539 (615)
Q Consensus       483 ----------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  539 (615)
                                            ...+.++||||||+++|||++ |+.|+......+   ...              .+..
T Consensus       175 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~---~~~--------------~i~~  237 (288)
T cd05093         175 YYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE---VIE--------------CITQ  237 (288)
T ss_pred             eeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH---HHH--------------HHHc
Confidence                                  113568999999999999998 888886543211   000              0110


Q ss_pred             hcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          540 WMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       540 ~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      -..+..    +......+.+++.+||+.||.+|||+.|+...|+.+....
T Consensus       238 ~~~~~~----~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~~~  283 (288)
T cd05093         238 GRVLQR----PRTCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAKAS  283 (288)
T ss_pred             CCcCCC----CCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHhc
Confidence            001111    1223346899999999999999999999999999887553

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-31  Score=284.44  Aligned_cols=206  Identities=25%  Similarity=0.384  Sum_probs=172.3

Q ss_pred             ceEEEEEEC---C--eEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATID---G--KVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~~---g--~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.|++|.|+   |  -.||||.++        .+|.+|+.+|.+|+|+|+++|+|+..+  ....+|+|.++.|||.+.|
T Consensus       124 gvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~--qp~mMV~ELaplGSLldrL  201 (1039)
T KOG0199|consen  124 GVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD--QPAMMVFELAPLGSLLDRL  201 (1039)
T ss_pred             eeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc--chhhHHhhhcccchHHHHH
Confidence            589999993   4  458999987        479999999999999999999999875  3688999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------  483 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------  483 (615)
                      +.....        .|-...+..++.|||.||.||.+++   +|||||.++|+||-..-.+||+||||.+.+..      
T Consensus       202 rka~~~--------~llv~~Lcdya~QiA~aM~YLeskr---lvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~Yv  270 (1039)
T KOG0199|consen  202 RKAKKA--------ILLVSRLCDYAMQIAKAMQYLESKR---LVHRDLAARNLLLASPRTVKICDFGLMRALGENEDMYV  270 (1039)
T ss_pred             hhcccc--------ceeHHHHHHHHHHHHHHHHHHhhhh---hhhhhhhhhhheecccceeeeecccceeccCCCCcceE
Confidence            873221        3778889999999999999999998   99999999999999999999999999987632      


Q ss_pred             --------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          484 --------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       484 --------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                          .++.++|||+|||+||||+| |..||.+....                     .+.+.+|
T Consensus       271 m~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~---------------------qIL~~iD  329 (1039)
T KOG0199|consen  271 MAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGI---------------------QILKNID  329 (1039)
T ss_pred             ecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHH---------------------HHHHhcc
Confidence                                25679999999999999999 77898764421                     1222333


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      .+-.-.-|..|.+.+.++++.||..+|.+||++..|.+.+
T Consensus       330 ~~erLpRPk~csedIY~imk~cWah~paDRptFsair~~~  369 (1039)
T KOG0199|consen  330 AGERLPRPKYCSEDIYQIMKNCWAHNPADRPTFSAIREDL  369 (1039)
T ss_pred             ccccCCCCCCChHHHHHHHHHhccCCccccccHHHHHHhH
Confidence            3222345778899999999999999999999999998654

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.97  E-value=1.7e-30  Score=263.71  Aligned_cols=216  Identities=22%  Similarity=0.326  Sum_probs=168.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||+|..  +|+.||||.++          ..+.+|++++++++|+||+++++++.+. +..++|+||+++|+|.+++.
T Consensus        16 ~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~~v~e~~~~~~L~~~~~   94 (267)
T cd08228          16 SEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIED-NELNIVLELADAGDLSQMIK   94 (267)
T ss_pred             eeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEEC-CeEEEEEEecCCCcHHHHHH
Confidence            47999987  78999999763          2467899999999999999999988754 47899999999999999886


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ......      ..+++..+..++.|++.||.|||+++   ++||||||+||+++.++.++|+|||++....        
T Consensus        95 ~~~~~~------~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~  165 (267)
T cd08228          95 YFKKQK------RLIPERTVWKYFVQLCSAVEHMHSRR---VMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHS  165 (267)
T ss_pred             Hhhhcc------CCCCHHHHHHHHHHHHHHHHHHhhCC---eeCCCCCHHHEEEcCCCCEEECccccceeccchhHHHhc
Confidence            432211      13789999999999999999999998   9999999999999999999999999875421        


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ...+.++||||||+++|||++|+.|+....... ....              ..+.....+.+  
T Consensus       166 ~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~-~~~~--------------~~~~~~~~~~~--  228 (267)
T cd08228         166 LVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL-FSLC--------------QKIEQCDYPPL--  228 (267)
T ss_pred             CCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccccH-HHHH--------------HHHhcCCCCCC--
Confidence                           123567999999999999999999986433110 0000              11111111211  


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcc
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLT  586 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~  586 (615)
                       .+......+.+++.+||+.+|++||++.||++.|+.+.
T Consensus       229 -~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~~  266 (267)
T cd08228         229 -PTEHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQMH  266 (267)
T ss_pred             -ChhhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHhc
Confidence             12234456899999999999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.97  E-value=1.9e-30  Score=262.11  Aligned_cols=208  Identities=25%  Similarity=0.375  Sum_probs=165.9

Q ss_pred             ceEEEEEE--C---CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--D---GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~---g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|.+  .   +..+|+|.++        +++.+|++++++++|+||+++++++..  ...++||||+++|+|.+++
T Consensus         9 g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~~v~e~~~~~~L~~~l   86 (257)
T cd05060           9 GSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKG--EPLMLVMELAPLGPLLKYL   86 (257)
T ss_pred             eeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcC--CceEEEEEeCCCCcHHHHH
Confidence            48999986  2   2689999875        246789999999999999999998753  3689999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      ....          .+++..+..++.|++.||.|||+.+   ++||||||+|||++.++.+||+|||+++...       
T Consensus        87 ~~~~----------~~~~~~~~~~~~qi~~~l~~lh~~~---i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~  153 (257)
T cd05060          87 KKRR----------EIPVSDLKELAHQVAMGMAYLESKH---FVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYR  153 (257)
T ss_pred             HhCC----------CCCHHHHHHHHHHHHHHHHHHhhcC---eeccCcccceEEEcCCCcEEeccccccceeecCCcccc
Confidence            7654          2899999999999999999999998   9999999999999999999999999985331       


Q ss_pred             -------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          483 -------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       483 -------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                         ...+.++||||||+++|||++ |+.|+......   .....+.              ... 
T Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~---~~~~~~~--------------~~~-  215 (257)
T cd05060         154 ATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGA---EVIAMLE--------------SGE-  215 (257)
T ss_pred             cccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCHH---HHHHHHH--------------cCC-
Confidence                               113458999999999999998 99998654321   1111110              000 


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcc
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLT  586 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~  586 (615)
                         ....+......+.+++.+||+.+|++||++.|+++.|+.+.
T Consensus       216 ---~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~~  256 (257)
T cd05060         216 ---RLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELESTFRRDP  256 (257)
T ss_pred             ---cCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhcc
Confidence               01123334456889999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.97  E-value=1.4e-30  Score=270.33  Aligned_cols=211  Identities=26%  Similarity=0.418  Sum_probs=165.7

Q ss_pred             ceEEEEEE-------CCeEEEEEEccH--------HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI-------DGKVLAVKKIKE--------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~-------~g~~vAvK~~~~--------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      +.||++..       .+..+|||.++.        .+.+|+++++++ +|+||+++++++... +..++||||+++|+|.
T Consensus        49 g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~  127 (302)
T cd05055          49 GKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIG-GPILVITEYCCYGDLL  127 (302)
T ss_pred             eeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecC-CceEEEEEcCCCCcHH
Confidence            47898864       345799998752        477899999999 899999999998754 4799999999999999


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC---
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN---  483 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~---  483 (615)
                      +++......        .+++.++..++.|++.||.|||+++   ++|+||||+|||++.++.+|++|||+++....   
T Consensus       128 ~~i~~~~~~--------~l~~~~~~~i~~~i~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~  196 (302)
T cd05055         128 NFLRRKRES--------FLTLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNVLLTHGKIVKICDFGLARDIMNDSN  196 (302)
T ss_pred             HHHHhCCCC--------CCCHHHHHHHHHHHHHHHHHHHHCC---eehhhhccceEEEcCCCeEEECCCcccccccCCCc
Confidence            999754321        3899999999999999999999987   99999999999999999999999999864211   


Q ss_pred             ----------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhh
Q 047629          484 ----------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNW  540 (615)
Q Consensus       484 ----------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  540 (615)
                                            ..+.++|||||||++|||++ |+.|+........      +..              .
T Consensus       197 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~~------~~~--------------~  256 (302)
T cd05055         197 YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSK------FYK--------------L  256 (302)
T ss_pred             eeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchHH------HHH--------------H
Confidence                                  13457899999999999998 9999865432111      000              0


Q ss_pred             cCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          541 MDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       541 ~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      ++.......+......+.+++.+|++.+|++||++.|+++.|.++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~~  301 (302)
T cd05055         257 IKEGYRMAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ  301 (302)
T ss_pred             HHcCCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence            111111111222345689999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.97  E-value=9.8e-31  Score=271.46  Aligned_cols=223  Identities=29%  Similarity=0.499  Sum_probs=169.2

Q ss_pred             ceEEEEEE--CCe--EEEEEEccH--------HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGK--VLAVKKIKE--------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~--~vAvK~~~~--------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|..  +|.  .+|+|.++.        .+.+|++++.++ +|+||+++++++.. ++..++|+||+++|+|.+++
T Consensus        21 g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~-~~~~~lv~e~~~~~~L~~~l   99 (303)
T cd05088          21 GQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEH-RGYLYLAIEYAPHGNLLDFL   99 (303)
T ss_pred             ceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECC-CCCceEEEEeCCCCcHHHHH
Confidence            48999987  453  468887652        467899999999 89999999999865 45799999999999999999


Q ss_pred             ccCCCCCCC------CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-
Q 047629          410 HPKSKSSSS------SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-  482 (615)
Q Consensus       410 ~~~~~~~~~------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-  482 (615)
                      +........      ......+++.+++.++.|++.||+|||+++   ++||||||+|||+++++.+||+|||+++... 
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~g---i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~  176 (303)
T cd05088         100 RKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVGENYVAKIADFGLSRGQEV  176 (303)
T ss_pred             HhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCC---ccccccchheEEecCCCcEEeCccccCcccch
Confidence            764321100      001124899999999999999999999998   9999999999999999999999999985321 


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhh
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNW  540 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  540 (615)
                                           ...+.++|||||||++|||+| |..||......+   ..   .           .+...
T Consensus       177 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~---~~---~-----------~~~~~  239 (303)
T cd05088         177 YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE---LY---E-----------KLPQG  239 (303)
T ss_pred             hhhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCChHH---HH---H-----------HHhcC
Confidence                                 124578999999999999998 999986433211   00   0           01110


Q ss_pred             cCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchh
Q 047629          541 MDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE  590 (615)
Q Consensus       541 ~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~  590 (615)
                          .....+......+.+++.+||+.+|++||++.++++.|..+.+...
T Consensus       240 ----~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~~~~  285 (303)
T cd05088         240 ----YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK  285 (303)
T ss_pred             ----CcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhh
Confidence                1111122233467899999999999999999999999987765543

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.97  E-value=1.6e-30  Score=261.82  Aligned_cols=206  Identities=30%  Similarity=0.435  Sum_probs=164.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||++..  +|+.|++|.+.         ..+.+|++++++++|+|++++++++.+. +..++||||+++++|.+++..
T Consensus        14 ~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~   92 (256)
T cd08529          14 GVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDK-GKLNIVMEYAENGDLHKLLKM   92 (256)
T ss_pred             eEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccC-CEEEEEEEeCCCCcHHHHHHH
Confidence            48999987  68999999874         2467899999999999999999998754 479999999999999999976


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------  482 (615)
                      ....        .+++.++..++.|++.||.|||+.+   ++|+||||+||+++.++.+||+|||+++...         
T Consensus        93 ~~~~--------~~~~~~~~~i~~~l~~al~~lH~~~---i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~~~~~  161 (256)
T cd08529          93 QRGR--------PLPEDQVWRFFIQILLGLAHLHSKK---ILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTI  161 (256)
T ss_pred             hcCC--------CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcceEEEeCCCCEEEcccccceeccCccchhhcc
Confidence            4221        3899999999999999999999987   9999999999999999999999999876431         


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                    ...+.++||||||+++|||++|+.|+......   ....             ....... +.+   
T Consensus       162 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~---~~~~-------------~~~~~~~-~~~---  221 (256)
T cd08529         162 VGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQG---ALIL-------------KIIRGVF-PPV---  221 (256)
T ss_pred             ccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHH---HHHH-------------HHHcCCC-CCC---
Confidence                          11356899999999999999999998654311   1000             0011111 111   


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       +......+.+++.+||+.+|++||+|.|+++.
T Consensus       222 -~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~  253 (256)
T cd08529         222 -SQMYSQQLAQLIDQCLTKDYRQRPDTFQLLRN  253 (256)
T ss_pred             -ccccCHHHHHHHHHHccCCcccCcCHHHHhhC
Confidence             22334568999999999999999999999874

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.97  E-value=3.6e-31  Score=265.93  Aligned_cols=205  Identities=23%  Similarity=0.347  Sum_probs=161.6

Q ss_pred             ccccccccc----ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEE
Q 047629          334 NLSEHYSIG----KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRINHANLVKLMGVSSDSQGNRFLVY  397 (615)
Q Consensus       334 ~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~  397 (615)
                      +|.-...+|    |.||....  +|+.+|+|+|++.          ..+|..+|.+++||.||+|+-.+.+ .+.+|||+
T Consensus        26 dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt-~~kLylVl  104 (357)
T KOG0598|consen   26 DFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQT-EEKLYLVL  104 (357)
T ss_pred             heeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEeccc-CCeEEEEE
Confidence            344444555    47887775  7899999999743          5679999999999999999977664 45899999


Q ss_pred             eecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCC
Q 047629          398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSL  477 (615)
Q Consensus       398 E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  477 (615)
                      ||+.||.|..+|.+...          +++....-++..|+.||.|||+++   ||||||||+|||||.+|.++|+||||
T Consensus       105 d~~~GGeLf~hL~~eg~----------F~E~~arfYlaEi~lAL~~LH~~g---IiyRDlKPENILLd~~GHi~LtDFgL  171 (357)
T KOG0598|consen  105 DYLNGGELFYHLQREGR----------FSEDRARFYLAEIVLALGYLHSKG---IIYRDLKPENILLDEQGHIKLTDFGL  171 (357)
T ss_pred             eccCCccHHHHHHhcCC----------cchhHHHHHHHHHHHHHHHHHhCC---eeeccCCHHHeeecCCCcEEEecccc
Confidence            99999999999987653          888888999999999999999998   99999999999999999999999999


Q ss_pred             CCCCC-----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHH
Q 047629          478 AAPAT-----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKRE  534 (615)
Q Consensus       478 a~~~~-----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~  534 (615)
                      ++...                       ..++..+|.||+|+++|||++|.+||.......      .+...        
T Consensus       172 ~k~~~~~~~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~~~------~~~~I--------  237 (357)
T KOG0598|consen  172 CKEDLKDGDATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDVKK------MYDKI--------  237 (357)
T ss_pred             chhcccCCCccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccHHH------HHHHH--------
Confidence            97431                       125678999999999999999999997644211      11111        


Q ss_pred             HHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCC
Q 047629          535 ERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRP  573 (615)
Q Consensus       535 ~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RP  573 (615)
                            ...++ ...+.-......++++..+..||++|-
T Consensus       238 ------~~~k~-~~~p~~ls~~ardll~~LL~rdp~~RL  269 (357)
T KOG0598|consen  238 ------LKGKL-PLPPGYLSEEARDLLKKLLKRDPRQRL  269 (357)
T ss_pred             ------hcCcC-CCCCccCCHHHHHHHHHHhccCHHHhc
Confidence                  11111 112222334568999999999999995

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.97  E-value=6.2e-31  Score=270.16  Aligned_cols=224  Identities=20%  Similarity=0.262  Sum_probs=161.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||++..  +++.||+|+++         +.+.+|++++++++|+||+++++++.. ++..++||||++++.+..+...
T Consensus        15 ~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e~~~~~~l~~~~~~   93 (287)
T cd07848          15 GVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRR-RGKLYLVFEYVEKNMLELLEEM   93 (287)
T ss_pred             EEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEec-CCEEEEEEecCCCCHHHHHHhc
Confidence            47999998  57899999875         236789999999999999999998865 4579999999998877655433


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------  482 (615)
                      ..          .+++..+..++.|++.||.|||+.+   ++||||||+||+++.++.+||+|||+++...         
T Consensus        94 ~~----------~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~  160 (287)
T cd07848          94 PN----------GVPPEKVRSYIYQLIKAIHWCHKND---IVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANYTE  160 (287)
T ss_pred             CC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCcEEEeeccCcccccccccccccc
Confidence            22          3889999999999999999999998   9999999999999999999999999986431         


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHH----HHHHhhhcCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKR----EERLRNWMDP  543 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~dp  543 (615)
                                     ..++.++|||||||++|||++|+.||......+...........+......    .........|
T Consensus       161 ~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (287)
T cd07848         161 YVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFP  240 (287)
T ss_pred             cccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccchhcccccC
Confidence                           124568999999999999999999997644322111111000000000000    0000000001


Q ss_pred             cCCC------CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          544 NLES------FYPIDGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       544 ~l~~------~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                      ....      .+.......+.++++.|++.||++|||++|+++
T Consensus       241 ~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~  283 (287)
T cd07848         241 AVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLN  283 (287)
T ss_pred             cccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            1100      111123346899999999999999999999886

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.97  E-value=2.2e-30  Score=263.45  Aligned_cols=209  Identities=26%  Similarity=0.456  Sum_probs=165.8

Q ss_pred             ceEEEEEE--CC---eEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DG---KVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g---~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      +.||+|..  +|   ..||||.++        .++..|+.++++++||||+++.+++.+ ++..++||||+++|+|.+++
T Consensus        18 g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l   96 (269)
T cd05065          18 GEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTK-SRPVMIITEFMENGALDSFL   96 (269)
T ss_pred             CeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECC-CCceEEEEecCCCCcHHHHH
Confidence            58999987  33   369999975        257789999999999999999998764 44789999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      .....         .+++.+++.++.|++.||+|||+++   ++||||||+||+++.++.+|++|||+++...       
T Consensus        97 ~~~~~---------~~~~~~~~~i~~~l~~al~~lH~~g---~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~  164 (269)
T cd05065          97 RQNDG---------QFTVIQLVGMLRGIAAGMKYLSEMN---YVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPT  164 (269)
T ss_pred             hhCCC---------CCCHHHHHHHHHHHHHHHHHHHHCC---EeecccChheEEEcCCCcEEECCCccccccccCccccc
Confidence            76432         2899999999999999999999998   9999999999999999999999999875321       


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhh
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNW  540 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  540 (615)
                                           ..++.++||||||+++||+++ |+.|+......+   ...              .+...
T Consensus       165 ~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~~---~~~--------------~i~~~  227 (269)
T cd05065         165 YTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQD---VIN--------------AIEQD  227 (269)
T ss_pred             cccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHHH---HHH--------------HHHcC
Confidence                                 113457999999999999887 999986543211   110              11111


Q ss_pred             cCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          541 MDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       541 ~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      ..    -..+.+.+..+.+++..||+.+|.+||+|++|+..|+.+
T Consensus       228 ~~----~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         228 YR----LPPPMDCPTALHQLMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             Cc----CCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            11    111234455688999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.97  E-value=1.5e-30  Score=264.02  Aligned_cols=216  Identities=22%  Similarity=0.330  Sum_probs=168.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||++..  +|+.+|||.+.          .++.+|+.++++++|+||+++++++.+. +..+++|||+++++|.+++.
T Consensus        16 g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~-~~~~~v~e~~~~~~L~~~~~   94 (267)
T cd08229          16 SEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIED-NELNIVLELADAGDLSRMIK   94 (267)
T ss_pred             eEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeC-CeEEEEEEecCCCCHHHHHH
Confidence            47999986  78999999764          2467899999999999999999998754 47899999999999999986


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ......      ..++|.++..++.|++.||.|||+++   ++|+||||+||+++.++.++++|||++....        
T Consensus        95 ~~~~~~------~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~  165 (267)
T cd08229          95 HFKKQK------RLIPEKTVWKYFVQLCSALEHMHSRR---VMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHS  165 (267)
T ss_pred             HhhccC------CCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCCEEECcchhhhccccCCccccc
Confidence            432211      13899999999999999999999998   9999999999999999999999999875321        


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ...+.++||||||+++|||++|..|+.......    ...           ...+.....+.+. 
T Consensus       166 ~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~----~~~-----------~~~~~~~~~~~~~-  229 (267)
T cd08229         166 LVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL----YSL-----------CKKIEQCDYPPLP-  229 (267)
T ss_pred             ccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccchH----HHH-----------hhhhhcCCCCCCC-
Confidence                           123457999999999999999999986432210    000           0111111222221 


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcc
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLT  586 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~  586 (615)
                        +......+.+++.+||+.||++||||.+|++.++++.
T Consensus       230 --~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~~  266 (267)
T cd08229         230 --SDHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRMH  266 (267)
T ss_pred             --cccccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhhc
Confidence              1234456889999999999999999999999998763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.97  E-value=1.3e-30  Score=280.55  Aligned_cols=220  Identities=24%  Similarity=0.404  Sum_probs=168.6

Q ss_pred             ceEEEEEEC-------CeEEEEEEccH--------HHHHHHHHHHhcC-CCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATID-------GKVLAVKKIKE--------DVTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~~-------g~~vAvK~~~~--------~~~~Ei~~l~~l~-H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      |.||+|.+.       ++.||||+++.        .+.+|+++|.++. |+||++++|+|... +..++|+||+++|+|.
T Consensus        51 G~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~-~~~~iv~E~~~~g~L~  129 (401)
T cd05107          51 GRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKG-GPIYIITEYCRYGDLV  129 (401)
T ss_pred             eeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccC-CCcEEEEeccCCCcHH
Confidence            489999863       36899999862        4678999999997 99999999998754 4789999999999999


Q ss_pred             HhhccCCCCC----------------------------------------------------------------------
Q 047629          407 KWLHPKSKSS----------------------------------------------------------------------  416 (615)
Q Consensus       407 ~~L~~~~~~~----------------------------------------------------------------------  416 (615)
                      ++++......                                                                      
T Consensus       130 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (401)
T cd05107         130 DYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDMKGTVKYADIESSNY  209 (401)
T ss_pred             HHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchhcchhhhhhhhhhccCc
Confidence            9997543100                                                                      


Q ss_pred             ------------------CCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCC
Q 047629          417 ------------------SSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA  478 (615)
Q Consensus       417 ------------------~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  478 (615)
                                        ........++|.+++.++.|++.||+|||+.+   ++||||||+|||+++++.+||+|||++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrdlkp~NiLl~~~~~~kL~DfGla  286 (401)
T cd05107         210 ESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASKN---CVHRDLAARNVLICEGKLVKICDFGLA  286 (401)
T ss_pred             CCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcCC---cCcccCCcceEEEeCCCEEEEEecCcc
Confidence                              00011134789999999999999999999887   999999999999999999999999998


Q ss_pred             CCCC-------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHH
Q 047629          479 APAT-------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEK  532 (615)
Q Consensus       479 ~~~~-------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~  532 (615)
                      +...                         ..++.++|||||||++|||++ |+.|+......+.  ..    .       
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~--~~----~-------  353 (401)
T cd05107         287 RDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQ--FY----N-------  353 (401)
T ss_pred             eecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHH--HH----H-------
Confidence            6421                         113567999999999999998 8888865432111  00    0       


Q ss_pred             HHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcc
Q 047629          533 REERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLT  586 (615)
Q Consensus       533 ~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~  586 (615)
                         .+    ........+......+.+++..||+.+|.+||+++||++.|+.+.
T Consensus       354 ---~~----~~~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~~  400 (401)
T cd05107         354 ---AI----KRGYRMAKPAHASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDLL  400 (401)
T ss_pred             ---HH----HcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence               00    111111223334567899999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.97  E-value=2.9e-30  Score=261.41  Aligned_cols=208  Identities=27%  Similarity=0.417  Sum_probs=165.0

Q ss_pred             ceEEEEEE-CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      +.||++.. .+..+|+|.+.      +.+.+|+.++++++|+|++++++++.  ++..+++|||+++|+|.+++......
T Consensus        20 ~~v~~~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~--~~~~~~v~e~~~~~~L~~~~~~~~~~   97 (260)
T cd05069          20 GEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVS--EEPIYIVTEFMGKGSLLDFLKEGDGK   97 (260)
T ss_pred             CeEEEEEEcCCceEEEEEcccCCccHHHHHHHHHHHHhCCCCCeeeEEEEEc--CCCcEEEEEcCCCCCHHHHHhhCCCC
Confidence            48999988 44579999875      35788999999999999999999874  34689999999999999999764321


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------------  482 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------------  482 (615)
                              .++|..+..++.|++.||+|||+.+   ++||||||+||++++++.+||+|||+++...             
T Consensus        98 --------~~~~~~~~~~~~~l~~al~~lH~~~---i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~  166 (260)
T cd05069          98 --------YLKLPQLVDMAAQIADGMAYIERMN---YIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFP  166 (260)
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHhCC---EeecccCcceEEEcCCCeEEECCCccceEccCCcccccCCCccc
Confidence                    3889999999999999999999987   9999999999999999999999999985421             


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                 ...+.++||||||+++|||++ |+.|+......+   ...              .+.....+    ..+
T Consensus       167 ~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~---~~~--------------~~~~~~~~----~~~  225 (260)
T cd05069         167 IKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNRE---VLE--------------QVERGYRM----PCP  225 (260)
T ss_pred             hhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHHH---HHH--------------HHHcCCCC----CCC
Confidence                       113457899999999999999 888886543211   110              01111111    122


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHh
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLSV  584 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~  584 (615)
                      .+....+.+++.+||+.||++||++++|++.|+.
T Consensus       226 ~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         226 QGCPESLHELMKLCWKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             cccCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence            3345568999999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.97  E-value=1.3e-30  Score=275.49  Aligned_cols=222  Identities=26%  Similarity=0.377  Sum_probs=167.6

Q ss_pred             ceEEEEEE-------CCeEEEEEEccH--------HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI-------DGKVLAVKKIKE--------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~-------~g~~vAvK~~~~--------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      |.||+|..       +++.||||+++.        .+.+|++++.++ +|+||++++++|...+...+++|||+++|+|.
T Consensus        21 g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv~ey~~~g~L~  100 (343)
T cd05103          21 GQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLS  100 (343)
T ss_pred             ceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCceEEEEeccCCCcHH
Confidence            58999873       468899999852        366899999999 78999999998876555689999999999999


Q ss_pred             HhhccCCCCCCC---------------------------------------------------------CCcccccCHHH
Q 047629          407 KWLHPKSKSSSS---------------------------------------------------------SGSVIFLTWSQ  429 (615)
Q Consensus       407 ~~L~~~~~~~~~---------------------------------------------------------~~~~~~l~~~~  429 (615)
                      +++.........                                                         ......++|.+
T Consensus       101 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (343)
T cd05103         101 NYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAEQEDLYKKVLTLED  180 (343)
T ss_pred             HHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhhhhhhhhhccCCHHH
Confidence            998753210000                                                         00012378999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------------------------CC
Q 047629          430 RLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------------------------ND  484 (615)
Q Consensus       430 ~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------------------------~~  484 (615)
                      +..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...                         ..
T Consensus       181 ~~~~~~qi~~al~~lH~~~---i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  257 (343)
T cd05103         181 LICYSFQVAKGMEFLASRK---CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRV  257 (343)
T ss_pred             HHHHHHHHHHHHHHHHhCC---eecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcceECcHHhcCCC
Confidence            9999999999999999998   9999999999999999999999999885421                         12


Q ss_pred             CCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHH
Q 047629          485 VMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARA  563 (615)
Q Consensus       485 ~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~  563 (615)
                      ++.++||||||+++|||++ |..|+........      +...          +.+-..+..    +......+.+++..
T Consensus       258 ~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~------~~~~----------~~~~~~~~~----~~~~~~~~~~~~~~  317 (343)
T cd05103         258 YTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE------FCRR----------LKEGTRMRA----PDYTTPEMYQTMLD  317 (343)
T ss_pred             CCchhhHHHHHHHHHHHHHCCCCCCCCccccHH------HHHH----------HhccCCCCC----CCCCCHHHHHHHHH
Confidence            3568999999999999997 8888865432111      0000          000001111    11122357899999


Q ss_pred             hhhcCCCCCCCHHHHHHHHHhccc
Q 047629          564 CTMDKSLSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       564 C~~~dP~~RPsm~ev~~~L~~l~~  587 (615)
                      ||+.||++||++.||++.|+.+.+
T Consensus       318 cl~~~p~~Rps~~eil~~l~~~~~  341 (343)
T cd05103         318 CWHGEPSQRPTFSELVEHLGNLLQ  341 (343)
T ss_pred             HccCChhhCcCHHHHHHHHHHHHh
Confidence            999999999999999999988765

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.97  E-value=1.4e-30  Score=267.03  Aligned_cols=217  Identities=22%  Similarity=0.374  Sum_probs=166.7

Q ss_pred             ceEEEEEEC-------CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATID-------GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~~-------g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      +.||+|...       ++.||+|+++        ..+.+|+.++.+++|+||+++++++... ...++++||+++++|.+
T Consensus        19 g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~-~~~~~~~e~~~~~~l~~   97 (283)
T cd05091          19 GKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKE-QPLSMIFSYCSHSDLHE   97 (283)
T ss_pred             CeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCC-CceEEEEEcCCCCcHHH
Confidence            479999862       4789999986        2367899999999999999999998754 47899999999999999


Q ss_pred             hhccCCCCCC------CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC
Q 047629          408 WLHPKSKSSS------SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA  481 (615)
Q Consensus       408 ~L~~~~~~~~------~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  481 (615)
                      ++........      .......+++..+..++.|++.||.|||+++   ++||||||+||++++++.+||+|||+++..
T Consensus        98 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~g---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~  174 (283)
T cd05091          98 FLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHH---VVHKDLATRNVLVFDKLNVKISDLGLFREV  174 (283)
T ss_pred             HHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcC---ccccccchhheEecCCCceEeccccccccc
Confidence            9864321100      0001124889999999999999999999998   999999999999999999999999987542


Q ss_pred             C-------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHH
Q 047629          482 T-------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREE  535 (615)
Q Consensus       482 ~-------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~  535 (615)
                      .                         ...+.++||||||+++|||++ |..|+......+   .                
T Consensus       175 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~---~----------------  235 (283)
T cd05091         175 YAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQD---V----------------  235 (283)
T ss_pred             ccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCHHH---H----------------
Confidence            1                         123568999999999999998 777876533211   0                


Q ss_pred             HHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHh
Q 047629          536 RLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSV  584 (615)
Q Consensus       536 ~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~  584 (615)
                       +....++.. ..++.+.+..+.+++..||+.+|++||+++||+..|+.
T Consensus       236 -~~~i~~~~~-~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~~  282 (283)
T cd05091         236 -IEMIRNRQV-LPCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSRLRT  282 (283)
T ss_pred             -HHHHHcCCc-CCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHhhC
Confidence             011111111 12344556668999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.97  E-value=7.4e-31  Score=270.28  Aligned_cols=222  Identities=21%  Similarity=0.373  Sum_probs=163.0

Q ss_pred             ceEEEEEE--CCeEEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      +.||+|..  +++.||+|.++.        .+.+|+.++++++|+||+++++++.. ++..++||||++ |+|.+++...
T Consensus        19 g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-~~~~~lv~e~~~-~~l~~~l~~~   96 (288)
T cd07871          19 ATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHT-ERCLTLVFEYLD-SDLKQYLDNC   96 (288)
T ss_pred             EEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcC-CCeEEEEEeCCC-cCHHHHHHhc
Confidence            48999987  689999998752        46689999999999999999999865 447899999997 5999998654


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                      ..         .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...          
T Consensus        97 ~~---------~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~~~~~~~  164 (288)
T cd07871          97 GN---------LMSMHNVKIFMFQLLRGLSYCHKRK---ILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNEV  164 (288)
T ss_pred             CC---------CCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEECCCCCEEECcCcceeeccCCCccccCce
Confidence            32         3789999999999999999999998   9999999999999999999999999985321          


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhH--HHHH-----HHHHhhhc
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV--EEKR-----EERLRNWM  541 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~--~~~~-----~~~~~~~~  541 (615)
                                    ..++.++||||+||++|||++|+.||......+....   +......  ....     ........
T Consensus       165 ~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (288)
T cd07871         165 VTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHL---IFRLLGTPTEETWPGITSNEEFRSYL  241 (288)
T ss_pred             ecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHH---HHHHhCCCChHHhhccccchhhhccc
Confidence                          1245679999999999999999999975443222111   1111100  0000     00111111


Q ss_pred             CCcCCCC----CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 DPNLESF----YPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp~l~~~----~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .|.....    ..........+|+.+|++.||.+|||++|++++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~h  285 (288)
T cd07871         242 FPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALRH  285 (288)
T ss_pred             cCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence            1111000    001123457899999999999999999999853

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.97  E-value=1.5e-30  Score=273.62  Aligned_cols=221  Identities=22%  Similarity=0.361  Sum_probs=162.2

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCC----CcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQ----GNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~----~~~~lV~E~~~~GsL~~  407 (615)
                      +.||+|..  +|+.||||+++.         .+.+|++++++++||||+++++++....    ...++||||++ ++|.+
T Consensus        14 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~   92 (338)
T cd07859          14 GVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYVVFELME-SDLHQ   92 (338)
T ss_pred             eEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEEEEecCC-CCHHH
Confidence            58999987  689999998752         3668999999999999999999875432    23799999996 68999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++....          .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...     
T Consensus        93 ~l~~~~----------~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~  159 (338)
T cd07859          93 VIKAND----------DLTPEHHQFFLYQLLRALKYIHTAN---VFHRDLKPKNILANADCKLKICDFGLARVAFNDTPT  159 (338)
T ss_pred             HHHhcc----------cCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCcEEEccCccccccccccCc
Confidence            987543          2899999999999999999999998   9999999999999999999999999986321     


Q ss_pred             -----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhH---------H
Q 047629          483 -----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV---------E  530 (615)
Q Consensus       483 -----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~---------~  530 (615)
                                             ..++.++|||||||++|||++|+.||.........   ..+......         .
T Consensus       160 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~---~~~~~~~~~~~~~~~~~i~  236 (338)
T cd07859         160 AIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQL---DLITDLLGTPSPETISRVR  236 (338)
T ss_pred             cccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHH---HHHHHHhCCCCHHHHHHhh
Confidence                                   12356899999999999999999998654321111   111110000         0


Q ss_pred             HHHHHHHhhhcCCcC----CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          531 EKREERLRNWMDPNL----ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       531 ~~~~~~~~~~~dp~l----~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..........+.+..    ...++ .....+.+++.+||+.||++||+++|+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~l~~~P~~Rpt~~e~l~h  290 (338)
T cd07859         237 NEKARRYLSSMRKKQPVPFSQKFP-NADPLALRLLERLLAFDPKDRPTAEEALAD  290 (338)
T ss_pred             hhhHHHHHHhhcccCCCchHHhcC-CCChHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence            000000111111111    01111 123457899999999999999999999975

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.97  E-value=1.7e-30  Score=262.04  Aligned_cols=208  Identities=27%  Similarity=0.462  Sum_probs=166.2

Q ss_pred             ceEEEEEECCeEEEEEEcc-----HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCC
Q 047629          343 KSVYRATIDGKVLAVKKIK-----EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSS  417 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~-----~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~  417 (615)
                      |.||+|...++.+|+|..+     ..+.+|+.++++++|+|++++++++.. + ..+++|||+++|+|.+++......  
T Consensus        20 g~v~~~~~~~~~~~iK~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~-~~~~v~e~~~~~~L~~~l~~~~~~--   95 (254)
T cd05083          20 GAVLQGEYTGQKVAVKNIKCDVTAQAFLEETAVMTKLHHKNLVRLLGVILH-N-GLYIVMELMSKGNLVNFLRTRGRA--   95 (254)
T ss_pred             CceEecccCCCceEEEeecCcchHHHHHHHHHHHHhCCCCCcCeEEEEEcC-C-CcEEEEECCCCCCHHHHHHhcCcC--
Confidence            4799999999999999886     357789999999999999999998764 3 579999999999999999764321  


Q ss_pred             CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------------
Q 047629          418 SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------------  482 (615)
Q Consensus       418 ~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------------  482 (615)
                            .+++..+..++.|++.||.|||+.+   ++||||||+||+++.++.+||+|||+++...               
T Consensus        96 ------~~~~~~~~~~~~qi~~al~~lH~~~---~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~y~~p  166 (254)
T cd05083          96 ------LVSVIQLLQFSLDVAEGMEYLESKK---LVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPVKWTAP  166 (254)
T ss_pred             ------CCCHHHHHHHHHHHHHHHHHHHhCC---eeccccCcceEEEcCCCcEEECCCccceeccccCCCCCCCceecCH
Confidence                  3789999999999999999999987   9999999999999999999999999885421               


Q ss_pred             -----CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHH
Q 047629          483 -----NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALS  556 (615)
Q Consensus       483 -----~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~  556 (615)
                           ..++.++||||||+++|||++ |+.|+......+       ...          .+....    ....+...+..
T Consensus       167 e~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~-------~~~----------~~~~~~----~~~~~~~~~~~  225 (254)
T cd05083         167 EALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKE-------VKE----------CVEKGY----RMEPPEGCPAD  225 (254)
T ss_pred             HHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCHHH-------HHH----------HHhCCC----CCCCCCcCCHH
Confidence                 224568999999999999998 888886543211       000          011101    11112233456


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHHHHHh
Q 047629          557 LATLARACTMDKSLSRPNMAEVVFNLSV  584 (615)
Q Consensus       557 l~~l~~~C~~~dP~~RPsm~ev~~~L~~  584 (615)
                      +.+++.+||+.+|++||+++++++.|++
T Consensus       226 ~~~li~~~l~~~p~~Rp~~~~l~~~l~~  253 (254)
T cd05083         226 VYVLMTSCWETEPKKRPSFHKLREKLEK  253 (254)
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHcc
Confidence            7899999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.97  E-value=2.7e-30  Score=261.48  Aligned_cols=208  Identities=29%  Similarity=0.433  Sum_probs=166.3

Q ss_pred             ceEEEEEE-CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      +.||++.. ++..+|+|.++      .++.+|+.++++++|+|++++++++.  +...+++|||+++|+|.+++......
T Consensus        20 ~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~--~~~~~lv~e~~~~~~L~~~~~~~~~~   97 (260)
T cd05070          20 GEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQLYAVVS--EEPIYIVTEYMSKGSLLDFLKDGEGR   97 (260)
T ss_pred             ceEEEEEecCCceeEEEEecCCCCCHHHHHHHHHHHHhcCCCceEEEEeEEC--CCCcEEEEEecCCCcHHHHHHhcCCC
Confidence            48999987 56789999886      45789999999999999999999874  34689999999999999999764321


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------------  482 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------------  482 (615)
                              .+++.++..++.|++.||.|||+++   ++||||||+||++++++.+||+|||++....             
T Consensus        98 --------~~~~~~~~~~~~~l~~al~~lH~~~---i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~  166 (260)
T cd05070          98 --------ALKLPNLVDMAAQVAAGMAYIERMN---YIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFP  166 (260)
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCccceEEEeCCceEEeCCceeeeeccCcccccccCCCCC
Confidence                    3899999999999999999999998   9999999999999999999999999975321             


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                 ...+.++||||||+++|||++ |+.|+......+.   ..              .+.    .......+
T Consensus       167 ~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~---~~--------------~~~----~~~~~~~~  225 (260)
T cd05070         167 IKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREV---LE--------------QVE----RGYRMPCP  225 (260)
T ss_pred             ccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHHHH---HH--------------HHH----cCCCCCCC
Confidence                       113458999999999999999 8888865332110   00              011    11111223


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHh
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLSV  584 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~  584 (615)
                      .+....+.+++.+|++.+|.+|||++++.+.|+.
T Consensus       226 ~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         226 QDCPISLHELMLQCWKKDPEERPTFEYLQSFLED  259 (260)
T ss_pred             CcCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence            3445678999999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.97  E-value=9.3e-31  Score=274.28  Aligned_cols=203  Identities=24%  Similarity=0.327  Sum_probs=162.6

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||+|.++.+          +.+|+.++++++||||+++++++... +..++||||+++|+|..++.
T Consensus         9 g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~-~~~~lv~E~~~~~~L~~~l~   87 (323)
T cd05595           9 GKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTH-DRLCFVMEYANGGELFFHLS   87 (323)
T ss_pred             EEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecC-CEEEEEEeCCCCCcHHHHHH
Confidence            58999886  6899999998642          45799999999999999999988754 47999999999999999987


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC---------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA---------  481 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~---------  481 (615)
                      ...          .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++..         
T Consensus        88 ~~~----------~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~  154 (323)
T cd05595          88 RER----------VFTEERARFYGAEIVSALEYLHSRD---VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKT  154 (323)
T ss_pred             HcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHEEEcCCCCEEecccHHhccccCCCCcccc
Confidence            543          2899999999999999999999998   999999999999999999999999987532         


Q ss_pred             --------------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          482 --------------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       482 --------------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                    ...++.++|||||||++|||++|+.||.......   ...             ....+  +.    
T Consensus       155 ~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~---~~~-------------~~~~~--~~----  212 (323)
T cd05595         155 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER---LFE-------------LILME--EI----  212 (323)
T ss_pred             ccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHHH---HHH-------------HHhcC--CC----
Confidence                          0124568999999999999999999997543211   000             00000  11    


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRP-----NMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~~  581 (615)
                      .++......+.+++..|++.||++||     ++.++++.
T Consensus       213 ~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~h  251 (323)
T cd05595         213 RFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  251 (323)
T ss_pred             CCCCCCCHHHHHHHHHHccCCHHHhCCCCCCCHHHHHcC
Confidence            12333345678999999999999998     88888764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=2.6e-30  Score=261.61  Aligned_cols=205  Identities=24%  Similarity=0.352  Sum_probs=163.4

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGKVLAVKKIK------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      +.||++..  +|+.+|+|.+.            ..+.+|++++++++|+||+++++++.+.+ ..++|+||+++++|.++
T Consensus        16 ~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~-~~~~v~e~~~~~~l~~~   94 (263)
T cd06625          16 GRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDE-TLSIFMEYMPGGSVKDQ   94 (263)
T ss_pred             eEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCC-eEEEEEEECCCCcHHHH
Confidence            47999976  68999999864            23667999999999999999999987544 89999999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      +....          .+++.....++.|++.||.|||+.+   ++||||||+||++++++++||+|||+++...      
T Consensus        95 ~~~~~----------~~~~~~~~~~~~~l~~~l~~lH~~~---i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~  161 (263)
T cd06625          95 LKAYG----------ALTETVTRKYTRQILEGVEYLHSNM---IVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSG  161 (263)
T ss_pred             HHHhC----------CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEeecccceecccccccc
Confidence            97543          2788999999999999999999998   9999999999999999999999999875321      


Q ss_pred             --------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          483 --------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       483 --------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                          ...+.++||||||+++|||++|+.|+........      ..              ....
T Consensus       162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~------~~--------------~~~~  221 (263)
T cd06625         162 TGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAMAA------IF--------------KIAT  221 (263)
T ss_pred             ccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccchHHH------HH--------------HHhc
Confidence                                1134689999999999999999999865332100      00              0011


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .......+......+.+++..||+.+|.+||++.|+++.
T Consensus       222 ~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  260 (263)
T cd06625         222 QPTNPQLPSHVSPDARNFLRRTFVENAKKRPSAEELLRH  260 (263)
T ss_pred             cCCCCCCCccCCHHHHHHHHHHhhcCcccCCCHHHHhhC
Confidence            111122333444568899999999999999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.97  E-value=2.1e-30  Score=264.53  Aligned_cols=216  Identities=23%  Similarity=0.371  Sum_probs=166.2

Q ss_pred             ceEEEEEEC-------CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATID-------GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~~-------g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      +.||+|...       +..||+|.+.        ..+.+|+.++.+++|+||+++++++... ...++||||+++|+|.+
T Consensus        20 g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~~v~e~~~~~~L~~   98 (277)
T cd05032          20 GMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTG-QPTLVVMELMAKGDLKS   98 (277)
T ss_pred             ceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCC-CCcEEEEecCCCCCHHH
Confidence            479998863       2679999975        2467899999999999999999998754 47899999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++...............++|..++.++.|++.||.|||+.+   ++||||||+||+++.++.+||+|||+++...     
T Consensus        99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~di~p~nill~~~~~~kl~dfg~~~~~~~~~~~  175 (277)
T cd05032          99 YLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKK---FVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYY  175 (277)
T ss_pred             HHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccccChheEEEcCCCCEEECCcccchhhccCccc
Confidence            99764321110001123789999999999999999999987   9999999999999999999999999875321     


Q ss_pred             --------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 --------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 --------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                          ...+.++|||||||++||+++ |+.|+......+   ...              .+....
T Consensus       176 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~---~~~--------------~~~~~~  238 (277)
T cd05032         176 RKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNEE---VLK--------------FVIDGG  238 (277)
T ss_pred             ccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCHHH---HHH--------------HHhcCC
Confidence                                124568999999999999998 888886433211   110              001000


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      .+    ..+......+.+++.+||+.+|++|||+.|++..|+
T Consensus       239 ~~----~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~  276 (277)
T cd05032         239 HL----DLPENCPDKLLELMRMCWQYNPKMRPTFLEIVSSLK  276 (277)
T ss_pred             CC----CCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHhc
Confidence            11    123334567899999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.97  E-value=1.4e-30  Score=273.54  Aligned_cols=203  Identities=24%  Similarity=0.338  Sum_probs=162.9

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||+|.++.          .+.+|+.++++++|+||+++.+++... +..++||||+++|+|.+++.
T Consensus         9 g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~~lv~Ey~~~g~L~~~l~   87 (328)
T cd05593           9 GKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTK-DRLCFVMEYVNGGELFFHLS   87 (328)
T ss_pred             EEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcC-CEEEEEEeCCCCCCHHHHHH
Confidence            58999886  689999999863          245799999999999999999988754 47999999999999999987


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ...          .+++.++..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...        
T Consensus        88 ~~~----------~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~  154 (328)
T cd05593          88 RER----------VFSEDRTRFYGAEIVSALDYLHSGK---IVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKT  154 (328)
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---eEecccCHHHeEECCCCcEEEecCcCCccCCCccccccc
Confidence            643          3899999999999999999999998   9999999999999999999999999986421        


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ..++.++|||||||++|||++|+.||......+   ..    ..         ..  ..+..   
T Consensus       155 ~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~~~---~~----~~---------~~--~~~~~---  213 (328)
T cd05593         155 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK---LF----EL---------IL--MEDIK---  213 (328)
T ss_pred             ccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCHHH---HH----HH---------hc--cCCcc---
Confidence                           124568999999999999999999996543211   00    00         00  01111   


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRP-----NMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~~  581 (615)
                       ++......+.+++.+|++.||++||     ++.|++++
T Consensus       214 -~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h  251 (328)
T cd05593         214 -FPRTLSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRH  251 (328)
T ss_pred             -CCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhcC
Confidence             2333345678999999999999997     89998865

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.97  E-value=2.1e-30  Score=264.89  Aligned_cols=216  Identities=26%  Similarity=0.431  Sum_probs=167.4

Q ss_pred             ceEEEEEE-C------CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI-D------GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~-~------g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      +.||+|.. +      ++.||||.++        +.+.+|+++|++++|+||+++++++... ...++||||+++|+|.+
T Consensus        19 ~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~   97 (280)
T cd05049          19 GKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEG-DPPIMVFEYMEHGDLNK   97 (280)
T ss_pred             ceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecC-CCeEEEEecCCCCCHHH
Confidence            48999875 2      4789999875        3577899999999999999999998764 47999999999999999


Q ss_pred             hhccCCCCCCC----CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-
Q 047629          408 WLHPKSKSSSS----SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-  482 (615)
Q Consensus       408 ~L~~~~~~~~~----~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-  482 (615)
                      ++.........    ......+++.++..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++... 
T Consensus        98 ~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~---i~h~dlkp~nili~~~~~~kl~d~g~~~~~~~  174 (280)
T cd05049          98 FLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQH---FVHRDLATRNCLVGYDLVVKIGDFGMSRDVYT  174 (280)
T ss_pred             HHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCC---eeccccccceEEEcCCCeEEECCcccceeccc
Confidence            99764321000    011124899999999999999999999998   9999999999999999999999999885320 


Q ss_pred             ------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHH
Q 047629          483 ------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERL  537 (615)
Q Consensus       483 ------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  537 (615)
                                              ..+++++|||||||++|||++ |+.|+......+   ....              +
T Consensus       175 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~~---~~~~--------------~  237 (280)
T cd05049         175 TDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNEE---VIEC--------------I  237 (280)
T ss_pred             CcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHHH---HHHH--------------H
Confidence                                    124568999999999999999 999986543211   1100              0


Q ss_pred             hhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          538 RNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       538 ~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      .   ... ....+......+.+++.+||+.||++||++.||++.|+
T Consensus       238 ~---~~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~  279 (280)
T cd05049         238 T---QGR-LLQRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQ  279 (280)
T ss_pred             H---cCC-cCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhh
Confidence            0   000 11122334456899999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.97  E-value=4.3e-30  Score=261.51  Aligned_cols=215  Identities=22%  Similarity=0.341  Sum_probs=162.3

Q ss_pred             ceEEEEEEC----CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATID----GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~~----g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||+|...    +..+|+|.++        ..+.+|+.++++++|+||++++|++.+. ...++||||+++|+|.+++.
T Consensus         9 g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~g~L~~~l~   87 (269)
T cd05087           9 GKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEV-TPYLLVMEFCPLGDLKGYLR   87 (269)
T ss_pred             ceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCC-CCcEEEEECCCCCcHHHHHH
Confidence            479999862    3579999885        2467899999999999999999998754 47899999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------  483 (615)
                      ......     ...+++..+..++.|++.||+|||+.+   ++||||||+||+++.++.+|++|||+++....       
T Consensus        88 ~~~~~~-----~~~~~~~~~~~~~~qi~~al~~lH~~~---i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~  159 (269)
T cd05087          88 SCRKAE-----LMTPDPTTLQRMACEIALGLLHLHKNN---FIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTP  159 (269)
T ss_pred             Hhhhcc-----cccccHHHHHHHHHHHHHHHHHHHHCC---EeccccCcceEEEcCCCcEEECCccccccccCcceeecC
Confidence            543211     013678888999999999999999998   99999999999999999999999998853210       


Q ss_pred             -------------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHH
Q 047629          484 -------------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERL  537 (615)
Q Consensus       484 -------------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  537 (615)
                                               ..+.++||||||+++|||++ |+.||......+...      ...      .+..
T Consensus       160 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~------~~~------~~~~  227 (269)
T cd05087         160 DQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVLT------YTV------REQQ  227 (269)
T ss_pred             CCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHHHHH------HHh------hccc
Confidence                                     12568999999999999996 999986544221100      000      0111


Q ss_pred             hhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          538 RNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       538 ~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      ....+|.+..    .....+.+++..|| .+|++|||++||+..|+
T Consensus       228 ~~~~~~~~~~----~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~~l~  268 (269)
T cd05087         228 LKLPKPRLKL----PLSDRWYEVMQFCW-LQPEQRPSAEEVHLLLS  268 (269)
T ss_pred             CCCCCCccCC----CCChHHHHHHHHHh-cCcccCCCHHHHHHHhc
Confidence            1222233221    22334778999999 58999999999998875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.97  E-value=3.8e-30  Score=261.61  Aligned_cols=209  Identities=27%  Similarity=0.448  Sum_probs=165.4

Q ss_pred             ceEEEEEE--C---CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--D---GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~---g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      +.||+|..  +   +..+|+|.++        +.+.+|+.++.+++||||+++.+++... +..++||||+++|+|.+++
T Consensus        18 g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~~   96 (267)
T cd05066          18 GEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKS-KPVMIVTEYMENGSLDAFL   96 (267)
T ss_pred             CceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecC-CccEEEEEcCCCCCHHHHH
Confidence            47999986  2   3479999875        2477899999999999999999998654 4789999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      .....         .+++.++..++.|++.||+|||+++   ++||||||+|||++.++.+|++|||+++...       
T Consensus        97 ~~~~~---------~~~~~~~~~i~~~i~~~l~~lH~~~---i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~  164 (267)
T cd05066          97 RKHDG---------QFTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAY  164 (267)
T ss_pred             HhcCC---------CCCHHHHHHHHHHHHHHHHHHHHCC---EeehhhchhcEEECCCCeEEeCCCCcccccccccceee
Confidence            76432         3899999999999999999999998   9999999999999999999999999875421       


Q ss_pred             -------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          483 -------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       483 -------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                         ...+.++||||||+++||+++ |+.|+......+   ...              .+.+...
T Consensus       165 ~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~---~~~--------------~~~~~~~  227 (267)
T cd05066         165 TTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQD---VIK--------------AIEEGYR  227 (267)
T ss_pred             ecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCHHH---HHH--------------HHhCCCc
Confidence                               123558999999999999887 999986543211   111              0111111


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      +    ..+...+..+.+++.+|++.+|.+||+|.++++.|.++
T Consensus       228 ~----~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         228 L----PAPMDCPAALHQLMLDCWQKDRNERPKFEQIVSILDKL  266 (267)
T ss_pred             C----CCCCCCCHHHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence            1    11223345678999999999999999999999999764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.97  E-value=5.3e-30  Score=259.72  Aligned_cols=215  Identities=22%  Similarity=0.370  Sum_probs=168.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||+|..  +|+.||+|.++          +.+.+|++++++++|+|++++++++.+. +..++||||+++|+|.+++.
T Consensus        16 ~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~   94 (267)
T cd08224          16 SVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIEN-NELNIVLELADAGDLSRMIK   94 (267)
T ss_pred             eEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecC-CeEEEEEecCCCCCHHHHHH
Confidence            48999998  68999999774          2467899999999999999999998764 47899999999999999986


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ......      ..+++.++..++.+++.||.|||+.+   ++||||||+||+++.++.++|+|||++....        
T Consensus        95 ~~~~~~------~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~  165 (267)
T cd08224          95 HFKKQK------RLIPERTIWKYFVQLCSALEHMHSKR---IMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHS  165 (267)
T ss_pred             HhcccC------CCcCHHHHHHHHHHHHHHHHHHHhCC---EecCCcChhhEEECCCCcEEEeccceeeeccCCCcccce
Confidence            532211      13899999999999999999999998   9999999999999999999999999875321        


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ..++.++|||||||++|||++|+.|+......    ..+...           .+....-+    
T Consensus       166 ~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~----~~~~~~-----------~~~~~~~~----  226 (267)
T cd08224         166 LVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN----LYSLCK-----------KIEKCDYP----  226 (267)
T ss_pred             ecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCcc----HHHHHh-----------hhhcCCCC----
Confidence                           11345789999999999999999998643311    010000           01110111    


Q ss_pred             CCCh-HHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcc
Q 047629          548 FYPI-DGALSLATLARACTMDKSLSRPNMAEVVFNLSVLT  586 (615)
Q Consensus       548 ~~~~-~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~  586 (615)
                      ..+. .....+.+++.+||+.+|++||++.+|++.|+.+.
T Consensus       227 ~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~~  266 (267)
T cd08224         227 PLPADHYSEELRDLVSRCINPDPEKRPDISYVLQVAKEMH  266 (267)
T ss_pred             CCChhhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHhc
Confidence            1122 33456889999999999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.97  E-value=2.7e-30  Score=272.03  Aligned_cols=157  Identities=25%  Similarity=0.439  Sum_probs=135.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      +.||++..  +|+.+|+|.++        ..+.+|++++++++|+||+++++++.+. +..++||||+++|+|.+++...
T Consensus        19 g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~   97 (333)
T cd06650          19 GVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD-GEISICMEHMDGGSLDQVLKKA   97 (333)
T ss_pred             EEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEEC-CEEEEEEecCCCCcHHHHHHHc
Confidence            58999988  58899999764        2477899999999999999999998764 5899999999999999999764


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                      .          .+++.....++.+++.||.|||+..  .++||||||+|||++.++.+||+|||++....          
T Consensus        98 ~----------~~~~~~~~~~~~~l~~~l~~lH~~~--~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~  165 (333)
T cd06650          98 G----------RIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGT  165 (333)
T ss_pred             C----------CCCHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChhhEEEcCCCCEEEeeCCcchhhhhhccccCCCC
Confidence            3          2788999999999999999999742  39999999999999999999999999985321          


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHcCCCCCCCCC
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLSGKKATRTTE  512 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~  512 (615)
                                 ..++.++|||||||++|||++|+.|+....
T Consensus       166 ~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~  206 (333)
T cd06650         166 RSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPD  206 (333)
T ss_pred             ccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcc
Confidence                       124568999999999999999999987543

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.97  E-value=1.6e-30  Score=265.88  Aligned_cols=225  Identities=24%  Similarity=0.375  Sum_probs=170.3

Q ss_pred             ceEEEEEEC------CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCC-CcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATID------GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQ-GNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~~------g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~-~~~~lV~E~~~~GsL~~  407 (615)
                      +.||++.++      ++.+|||.++        ..+.+|++++++++|+||+++.+++.... ...+++|||+++|+|.+
T Consensus        18 ~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~   97 (284)
T cd05038          18 GKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRD   97 (284)
T ss_pred             eeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceEEEEecCCCCCHHH
Confidence            489999863      6789999885        24778999999999999999999886522 25899999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++.....         .++|.++..++.|++.||+|||+.+   ++||||||+||+++.++.+|++|||++....     
T Consensus        98 ~l~~~~~---------~~~~~~~~~~~~~l~~aL~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~  165 (284)
T cd05038          98 YLQRHRD---------QINLKRLLLFSSQICKGMDYLGSQR---YIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDY  165 (284)
T ss_pred             HHHhCcc---------ccCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHhEEEcCCCCEEEcccccccccccCCcc
Confidence            9976542         3899999999999999999999998   9999999999999999999999999986542     


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                           ...+.++||||||+++|||++|+.|+.......... ... ..    .......+.+.+
T Consensus       166 ~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~-~~~-~~----~~~~~~~~~~~~  239 (284)
T cd05038         166 YYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRM-IGI-AQ----GQMIVTRLLELL  239 (284)
T ss_pred             eeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhccc-ccc-cc----ccccHHHHHHHH
Confidence                                 113457999999999999999999876432211000 000 00    000001111122


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      ........+..+...+.+++.+||+.+|++||+|.||+++|+.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i  283 (284)
T cd05038         240 KEGERLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRL  283 (284)
T ss_pred             HcCCcCCCCccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhc
Confidence            22111122333446789999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.97  E-value=3.1e-30  Score=265.49  Aligned_cols=219  Identities=23%  Similarity=0.350  Sum_probs=165.9

Q ss_pred             ceEEEEEEC-------CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATID-------GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~~-------g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      +.||+|...       +..||+|.++        ..+.+|+.++++++|+||+++++++.+. ...++||||+++|+|.+
T Consensus        20 g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-~~~~lv~e~~~~g~L~~   98 (288)
T cd05061          20 GMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKG-QPTLVVMELMAHGDLKS   98 (288)
T ss_pred             cEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCC-CCcEEEEeCCCCCCHHH
Confidence            489998642       4579999874        2366799999999999999999998754 47899999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++...............+++..+..++.|++.||.|||+++   ++||||||+||++++++.+|++|||+++...     
T Consensus        99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---i~H~dikp~nili~~~~~~~L~Dfg~~~~~~~~~~~  175 (288)
T cd05061          99 YLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKK---FVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYY  175 (288)
T ss_pred             HHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---CcCCCCChheEEEcCCCcEEECcCCccccccccccc
Confidence            99754321111111123678899999999999999999998   9999999999999999999999999876320     


Q ss_pred             --------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 --------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 --------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                          ..++.++|||||||++|||++ |+.|+......+       +.             ....
T Consensus       176 ~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~~~-------~~-------------~~~~  235 (288)
T cd05061         176 RKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQ-------VL-------------KFVM  235 (288)
T ss_pred             cccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCHHH-------HH-------------HHHH
Confidence                                124568999999999999999 677876433110       00             0011


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcc
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLT  586 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~  586 (615)
                      +... ...+......+.+++.+|++.||++||+|.|+++.|.+..
T Consensus       236 ~~~~-~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~  279 (288)
T cd05061         236 DGGY-LDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDL  279 (288)
T ss_pred             cCCC-CCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhc
Confidence            1111 1122333457899999999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.97  E-value=1.9e-30  Score=273.97  Aligned_cols=203  Identities=21%  Similarity=0.267  Sum_probs=161.8

Q ss_pred             ceEEEEEEC---CeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATID---GKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~~---g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|...   +..||+|++..          .+.+|+.++..++||||+++++++.+. +..++||||+++|+|.+++
T Consensus        44 g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~-~~~~lv~Ey~~~g~L~~~i  122 (340)
T PTZ00426         44 GRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDE-SYLYLVLEFVIGGEFFTFL  122 (340)
T ss_pred             eEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeC-CEEEEEEeCCCCCcHHHHH
Confidence            589999862   36899998852          355799999999999999999998754 4799999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------  483 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------  483 (615)
                      ....          .+++..+..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||+++....      
T Consensus       123 ~~~~----------~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~~~~~~  189 (340)
T PTZ00426        123 RRNK----------RFPNDVGCFYAAQIVLIFEYLQSLN---IVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTRTYTLC  189 (340)
T ss_pred             HHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eEccCCCHHHEEECCCCCEEEecCCCCeecCCCcceec
Confidence            7654          2889999999999999999999998   99999999999999999999999999864321      


Q ss_pred             --------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          484 --------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       484 --------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                    ..+.++|||||||++|||++|+.||.....   ......              +   .+..  ..+
T Consensus       190 gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~---~~~~~~--------------i---~~~~--~~~  247 (340)
T PTZ00426        190 GTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEP---LLIYQK--------------I---LEGI--IYF  247 (340)
T ss_pred             CChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCH---HHHHHH--------------H---hcCC--CCC
Confidence                          245689999999999999999999975432   111110              0   1100  112


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHHH
Q 047629          550 PIDGALSLATLARACTMDKSLSRP-----NMAEVVFN  581 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~~  581 (615)
                      +......+.+++++|++.||++|+     +++|++++
T Consensus       248 p~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h  284 (340)
T PTZ00426        248 PKFLDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEH  284 (340)
T ss_pred             CCCCCHHHHHHHHHHcccCHHHcCCCCCCCHHHHHcC
Confidence            223334578999999999999995     88888775

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.97  E-value=5.3e-30  Score=259.15  Aligned_cols=209  Identities=26%  Similarity=0.400  Sum_probs=167.5

Q ss_pred             ceEEEEEE-CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      +.||++.. +++.+|||.++      +++.+|++++++++|+||+++++++.. +...++||||+++|+|.+++......
T Consensus        20 ~~v~~~~~~~~~~~~vK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~~v~e~~~~~~L~~~i~~~~~~   98 (261)
T cd05034          20 GEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSE-EEPIYIVTEYMSKGSLLDFLKSGEGK   98 (261)
T ss_pred             eEEEEEEEcCCceEEEEEecCCccCHHHHHHHHHHHhhCCCCCEeeeeeeeec-CCceEEEEeccCCCCHHHHHhccccC
Confidence            58999987 55789999886      358899999999999999999998764 34789999999999999999764321


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------------  482 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------------  482 (615)
                              .+++.++..++.+++.||.|||+++   ++|+||||+||++++++.+|++|||++....             
T Consensus        99 --------~~~~~~~~~~~~~i~~al~~lh~~~---i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~  167 (261)
T cd05034          99 --------KLRLPQLVDMAAQIAEGMAYLESRN---YIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFP  167 (261)
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHhCC---cccCCcchheEEEcCCCCEEECccccceeccchhhhhhhccCCC
Confidence                    3899999999999999999999998   9999999999999999999999999875432             


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                 ...+.++||||||+++|||++ |+.|+.......   ...              .+.....    ...+
T Consensus       168 ~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~---~~~--------------~~~~~~~----~~~~  226 (261)
T cd05034         168 IKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNRE---VLE--------------QVERGYR----MPRP  226 (261)
T ss_pred             ccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHH---HHH--------------HHHcCCC----CCCC
Confidence                       124568999999999999999 999986433211   000              0110011    1112


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHh
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLSV  584 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~  584 (615)
                      .+.+..+.+++.+|++.+|++||+++|+.+.|+.
T Consensus       227 ~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         227 PNCPEELYDLMLQCWDKDPEERPTFEYLQSFLED  260 (261)
T ss_pred             CCCCHHHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence            2334568999999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.97  E-value=2.3e-30  Score=263.15  Aligned_cols=221  Identities=22%  Similarity=0.322  Sum_probs=169.6

Q ss_pred             HHHccccccccccc----ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEE
Q 047629          329 MESTMNLSEHYSIG----KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFL  395 (615)
Q Consensus       329 ~~at~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~l  395 (615)
                      ..++.++.....+|    +.||+|..  ++..||+|.+.       +.+.+|++++++++|+||+++++++... +..++
T Consensus         4 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~l   82 (268)
T cd06624           4 EYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSEN-GFFKI   82 (268)
T ss_pred             ccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccC-CEEEE
Confidence            34556666656665    48999986  57889999875       2477899999999999999999998754 47899


Q ss_pred             EEeecCCCCHHHhhccCCCCCCCCCccccc--CHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC-CCcEEE
Q 047629          396 VYEYAENGSLDKWLHPKSKSSSSSGSVIFL--TWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS-RFKAKI  472 (615)
Q Consensus       396 V~E~~~~GsL~~~L~~~~~~~~~~~~~~~l--~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-~~~~kl  472 (615)
                      |+||+++++|.+++.....         .+  ++..+..++.|++.||+|||+.+   |+||||||+||+++. ++.+||
T Consensus        83 v~e~~~~~~L~~~l~~~~~---------~~~~~~~~~~~~~~qi~~al~~lH~~~---i~h~dl~p~nil~~~~~~~~~l  150 (268)
T cd06624          83 FMEQVPGGSLSALLRSKWG---------PLKDNEQTIIFYTKQILEGLKYLHDNQ---IVHRDIKGDNVLVNTYSGVVKI  150 (268)
T ss_pred             EEecCCCCCHHHHHHHhcc---------cCCCcHHHHHHHHHHHHHHHHHHHHCC---EeecCCCHHHEEEcCCCCeEEE
Confidence            9999999999999976432         14  78889999999999999999987   999999999999986 679999


Q ss_pred             eecCCCCCCC-------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHH
Q 047629          473 ANFSLAAPAT-------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVL  527 (615)
Q Consensus       473 ~DFGla~~~~-------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~  527 (615)
                      +|||++....                         ...+.++||||||+++|||++|+.|+......... .+.      
T Consensus       151 ~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~-~~~------  223 (268)
T cd06624         151 SDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAA-MFK------  223 (268)
T ss_pred             ecchhheecccCCCccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChhhh-Hhh------
Confidence            9999874321                         01456899999999999999999998653321110 000      


Q ss_pred             hHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          528 KVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       528 ~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                             .... ...+    ..+......+.+++.+||+.+|.+||++.|++.+
T Consensus       224 -------~~~~-~~~~----~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  265 (268)
T cd06624         224 -------VGMF-KIHP----EIPESLSAEAKNFILRCFEPDPDKRASAHDLLQD  265 (268)
T ss_pred             -------hhhh-ccCC----CCCcccCHHHHHHHHHHcCCCchhCCCHHHHHhC
Confidence                   0000 0111    2233344567899999999999999999999864

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.97  E-value=4e-30  Score=264.37  Aligned_cols=217  Identities=30%  Similarity=0.444  Sum_probs=165.7

Q ss_pred             ceEEEEEE-------CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI-------DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~-------~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      +.||++..       ++..+|+|.++        .++.+|+.++++++|+||+++++++.+. ...++++||+++|+|.+
T Consensus        19 g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~   97 (288)
T cd05050          19 GRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVG-KPMCLLFEYMAYGDLNE   97 (288)
T ss_pred             ccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCC-CccEEEEecCCCCCHHH
Confidence            47999875       35789999875        3477899999999999999999998754 47899999999999999


Q ss_pred             hhccCCCCCCC------------CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeec
Q 047629          408 WLHPKSKSSSS------------SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF  475 (615)
Q Consensus       408 ~L~~~~~~~~~------------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  475 (615)
                      ++.........            ......+++.+++.++.|++.||+|||+.+   ++||||||+||++++++.+||+||
T Consensus        98 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~---i~H~dl~p~nil~~~~~~~~l~df  174 (288)
T cd05050          98 FLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERK---FVHRDLATRNCLVGENMVVKIADF  174 (288)
T ss_pred             HHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCC---eecccccHhheEecCCCceEECcc
Confidence            99753211000            011124889999999999999999999987   999999999999999999999999


Q ss_pred             CCCCCCC-------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhH
Q 047629          476 SLAAPAT-------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKV  529 (615)
Q Consensus       476 Gla~~~~-------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~  529 (615)
                      |+++...                         ..++.++|||||||++|||++ |..|+......+   .   ..     
T Consensus       175 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~~~---~---~~-----  243 (288)
T cd05050         175 GLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHEE---V---IY-----  243 (288)
T ss_pred             ccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHH---H---HH-----
Confidence            9875321                         123567999999999999998 888875433110   0   00     


Q ss_pred             HHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHh
Q 047629          530 EEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSV  584 (615)
Q Consensus       530 ~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~  584 (615)
                               ...+.... ..+......+.+++.+|++.||.+||++.|+++.|++
T Consensus       244 ---------~~~~~~~~-~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~~  288 (288)
T cd05050         244 ---------YVRDGNVL-SCPDNCPLELYNLMRLCWSKLPSDRPSFASINRILQR  288 (288)
T ss_pred             ---------HHhcCCCC-CCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhhC
Confidence                     00111110 1122344568999999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.97  E-value=1.8e-30  Score=264.29  Aligned_cols=208  Identities=19%  Similarity=0.369  Sum_probs=162.3

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhc-CCCCcccEEEEEEcCC-----CcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGKVLAVKKIK------EDVTEELRILQRI-NHANLVKLMGVSSDSQ-----GNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~-----~~~~lV~E~~~~GsL~~~  408 (615)
                      +.||+|..  +++.||+|.+.      ..+..|+.++.++ +|+||+++++++...+     ...+++|||+++|+|.++
T Consensus        20 g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~   99 (272)
T cd06637          20 GQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDL   99 (272)
T ss_pred             eEEEEEEEcCCCcEEEEEEEEcCCccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcEEEEEEEcCCCCcHHHH
Confidence            47999987  67899999984      3577899999998 7999999999986432     247899999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      +......        .++|..+..++.|++.||+|||+++   ++||||||+||++++++.+||+|||+++...      
T Consensus       100 l~~~~~~--------~l~~~~~~~~~~qi~~~l~~LH~~~---ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~~~~~~~  168 (272)
T cd06637         100 IKNTKGN--------TLKEEWIAYICREILRGLSHLHQHK---VIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRR  168 (272)
T ss_pred             HHhccCC--------CCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCCHHHEEECCCCCEEEccCCCceecccccccC
Confidence            9764321        3899999999999999999999997   9999999999999999999999999985321      


Q ss_pred             ----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhh
Q 047629          483 ----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNW  540 (615)
Q Consensus       483 ----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  540 (615)
                                            ..++.++|||||||++|||++|+.|+.........                 ......
T Consensus       169 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~~~-----------------~~~~~~  231 (272)
T cd06637         169 NTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRAL-----------------FLIPRN  231 (272)
T ss_pred             CcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHHHHH-----------------HHHhcC
Confidence                                  01344799999999999999999998643311000                 000000


Q ss_pred             cCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          541 MDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       541 ~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..+.+   .+......+.+++.+||..||.+||++.|+++.
T Consensus       232 ~~~~~---~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~  269 (272)
T cd06637         232 PAPRL---KSKKWSKKFQSFIESCLVKNHSQRPTTEQLMKH  269 (272)
T ss_pred             CCCCC---CCCCcCHHHHHHHHHHcCCChhhCCCHHHHhhC
Confidence            11111   111233467899999999999999999999763

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.97  E-value=3.1e-30  Score=267.62  Aligned_cols=211  Identities=26%  Similarity=0.432  Sum_probs=165.2

Q ss_pred             ceEEEEEE--CCe----EEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGK----VLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~----~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      +.||+|..  +|+    .+|+|.+..        .+.+|+.++++++|+||++++|+|...  ..++++||+++|+|.++
T Consensus        21 g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~--~~~~v~e~~~~g~l~~~   98 (303)
T cd05110          21 GTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP--TIQLVTQLMPHGCLLDY   98 (303)
T ss_pred             ccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC--CceeeehhcCCCCHHHH
Confidence            48999987  454    578987752        467899999999999999999998642  56799999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      +.....         .+++..++.++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++...      
T Consensus        99 ~~~~~~---------~~~~~~~~~~~~qi~~~L~~LH~~~---ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~  166 (303)
T cd05110          99 VHEHKD---------NIGSQLLLNWCVQIAKGMMYLEERR---LVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEY  166 (303)
T ss_pred             HHhccc---------CCCHHHHHHHHHHHHHHHHHHhhcC---eeccccccceeeecCCCceEEccccccccccCccccc
Confidence            976432         3889999999999999999999987   9999999999999999999999999986431      


Q ss_pred             -------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          483 -------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       483 -------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                         ...+.++||||||+++|||++ |+.|+......+       +....          ...  
T Consensus       167 ~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~~-------~~~~~----------~~~--  227 (303)
T cd05110         167 NADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTRE-------IPDLL----------EKG--  227 (303)
T ss_pred             ccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHHH-------HHHHH----------HCC--
Confidence                               113457999999999999997 888886432110       11111          000  


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      ..+  ..+......+.+++..||..+|++||+|+|+++.|..+...
T Consensus       228 ~~~--~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~~~  271 (303)
T cd05110         228 ERL--PQPPICTIDVYMVMVKCWMIDADSRPKFKELAAEFSRMARD  271 (303)
T ss_pred             CCC--CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence            001  11122345688999999999999999999999999887544

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.97  E-value=7e-30  Score=259.78  Aligned_cols=215  Identities=22%  Similarity=0.348  Sum_probs=160.7

Q ss_pred             ceEEEEEE-C---CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI-D---GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~-~---g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||+|.. +   ...+|+|.++        ..+.+|+++++.++|+||+++++.+.+. ...++||||+++|+|.+++.
T Consensus         9 g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~-~~~~lv~e~~~~g~L~~~l~   87 (269)
T cd05042           9 GKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIES-IPYLLVLEFCPLGDLKNYLR   87 (269)
T ss_pred             ceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCC-CceEEEEEeCCCCcHHHHHH
Confidence            47999875 2   3578999774        2467899999999999999999998754 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      .......     ...++.....++.|++.||+|||+++   |+||||||+|||+++++.+||+|||+++...        
T Consensus        88 ~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~  159 (269)
T cd05042          88 SNRGMVA-----QMAQKDVLQRMACEVASGLLWLHQAD---FIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITK  159 (269)
T ss_pred             hcccccc-----ccccHHHHHHHHHHHHHHHHHHHhcC---EecccccHhheEecCCCcEEEeccccccccccchheecc
Confidence            6543110     12578889999999999999999998   9999999999999999999999999975310        


Q ss_pred             ------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHH
Q 047629          483 ------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERL  537 (615)
Q Consensus       483 ------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  537 (615)
                                              ...+.++|||||||++|||++ |+.|+....+.+.      .....      ....
T Consensus       160 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~------~~~~~------~~~~  227 (269)
T cd05042         160 DCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQV------LKQVV------REQD  227 (269)
T ss_pred             CCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHHH------HHHHh------hccC
Confidence                                    013458999999999999999 7778765432111      01000      0011


Q ss_pred             hhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          538 RNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       538 ~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      ..+.+|.+.    ......+.+++..|| .||++||+++||++.|+
T Consensus       228 ~~~~~~~~~----~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~~l~  268 (269)
T cd05042         228 IKLPKPQLD----LKYSDRWYEVMQFCW-LDPETRPTAEEVHELLT  268 (269)
T ss_pred             ccCCCCccc----ccCCHHHHHHHHHHh-cCcccccCHHHHHHHhc
Confidence            112223222    233345677888998 59999999999999874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.97  E-value=7.7e-30  Score=258.84  Aligned_cols=209  Identities=27%  Similarity=0.409  Sum_probs=165.2

Q ss_pred             ceEEEEEE-CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      +.||+|.. ++..||+|+++      +.+.+|++++++++|+||+++++++.  +...++||||+++|+|.+++......
T Consensus        20 ~~v~~~~~~~~~~valK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~--~~~~~lv~e~~~~~~L~~~~~~~~~~   97 (262)
T cd05071          20 GEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS--EEPIYIVTEYMSKGSLLDFLKGEMGK   97 (262)
T ss_pred             CcEEEEEecCCceEEEEecccCccCHHHHHHHHHHHHhCCCCCcceEEEEEC--CCCcEEEEEcCCCCcHHHHHhhcccc
Confidence            48999987 44579999886      35788999999999999999999864  34689999999999999999754321


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------------  482 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------------  482 (615)
                              .++|.++..++.|++.||+|||+.+   ++||||||+||++++++.+||+|||+++...             
T Consensus        98 --------~~~~~~~~~~~~~l~~aL~~lH~~~---i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~  166 (262)
T cd05071          98 --------YLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP  166 (262)
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHCC---ccccccCcccEEEcCCCcEEeccCCceeeccccccccccCCccc
Confidence                    3899999999999999999999987   9999999999999999999999999885321             


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                 ..++.++||||||+++|||++ |+.|+......+   ...              .+......    ..+
T Consensus       167 ~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~~---~~~--------------~~~~~~~~----~~~  225 (262)
T cd05071         167 IKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE---VLD--------------QVERGYRM----PCP  225 (262)
T ss_pred             ceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChHH---HHH--------------HHhcCCCC----CCc
Confidence                       113458999999999999999 777876443211   000              00000111    122


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      .+....+.+++.+|++.||++||++.++++.|+..
T Consensus       226 ~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~~  260 (262)
T cd05071         226 PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY  260 (262)
T ss_pred             cccCHHHHHHHHHHccCCcccCCCHHHHHHHHHHh
Confidence            34456689999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=3.1e-30  Score=272.78  Aligned_cols=203  Identities=25%  Similarity=0.384  Sum_probs=164.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH------------HHHHHHHHHhcC-CCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIKED------------VTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~------------~~~Ei~~l~~l~-H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      +.|+.|..  +|+.||||.+.++            +.+|+.++++++ ||||++++.++.... ..++||||+.+|+|.+
T Consensus        31 gkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~-~~~ivmEy~~gGdL~~  109 (370)
T KOG0583|consen   31 GKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPT-KIYIVMEYCSGGDLFD  109 (370)
T ss_pred             eeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCC-eEEEEEEecCCccHHH
Confidence            58999976  7899999976542            347999999998 999999999987654 6999999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC-CcEEEeecCCCCCCC-CC-
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR-FKAKIANFSLAAPAT-ND-  484 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-~~~kl~DFGla~~~~-~~-  484 (615)
                      ++....          .+.+.....++.|++.|++|+|+++   |+||||||+|||+|.+ +++||+|||++.... .. 
T Consensus       110 ~i~~~g----------~l~E~~ar~~F~Qlisav~y~H~~g---i~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~~~~~  176 (370)
T KOG0583|consen  110 YIVNKG----------RLKEDEARKYFRQLISAVAYCHSRG---IVHRDLKPENILLDGNEGNLKLSDFGLSAISPGEDG  176 (370)
T ss_pred             HHHHcC----------CCChHHHHHHHHHHHHHHHHHHhCC---EeeCCCCHHHEEecCCCCCEEEeccccccccCCCCC
Confidence            998843          3888999999999999999999998   9999999999999999 999999999997651 11 


Q ss_pred             ----------------------C-CCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          485 ----------------------V-MPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       485 ----------------------~-~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                            + ..++||||+||+||.|++|+.||+....   ..+...                 +.
T Consensus       177 ~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~---~~l~~k-----------------i~  236 (370)
T KOG0583|consen  177 LLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSNV---PNLYRK-----------------IR  236 (370)
T ss_pred             cccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCccH---HHHHHH-----------------Hh
Confidence                                  1 3589999999999999999999986331   111110                 01


Q ss_pred             CCcCCCCCChHH-HHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 DPNLESFYPIDG-ALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp~l~~~~~~~~-~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ...  -.+|... ..++..|+.+|+..||.+|+++.||++.
T Consensus       237 ~~~--~~~p~~~~S~~~~~Li~~mL~~~P~~R~t~~~i~~h  275 (370)
T KOG0583|consen  237 KGE--FKIPSYLLSPEARSLIEKMLVPDPSTRITLLEILEH  275 (370)
T ss_pred             cCC--ccCCCCcCCHHHHHHHHHHcCCCcccCCCHHHHhhC
Confidence            000  1122222 5567999999999999999999999953

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.97  E-value=4.6e-30  Score=266.28  Aligned_cols=222  Identities=22%  Similarity=0.337  Sum_probs=161.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      +.||+|..  +|+.||||.++.        .+.+|+.++++++|+||+++++++.+. ...++||||++ |+|.+++...
T Consensus        19 g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-~~~~lv~e~~~-~~l~~~~~~~   96 (303)
T cd07869          19 ATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTK-ETLTLVFEYVH-TDLCQYMDKH   96 (303)
T ss_pred             EEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecC-CeEEEEEECCC-cCHHHHHHhC
Confidence            48999987  689999998852        367899999999999999999998754 47899999996 6888888654


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                      ..         .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...          
T Consensus        97 ~~---------~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  164 (303)
T cd07869          97 PG---------GLHPENVKLFLFQLLRGLSYIHQRY---ILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEV  164 (303)
T ss_pred             CC---------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEECCCCcceeccCCCccCCCCc
Confidence            32         3888999999999999999999998   9999999999999999999999999875321          


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHH--HHH--HHHhhhcCCc
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE--KRE--ERLRNWMDPN  544 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~--~~~--~~~~~~~dp~  544 (615)
                                    ..++.++|||||||++|||++|+.||....+...  ....+...+....  ...  .... ..++.
T Consensus       165 ~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  241 (303)
T cd07869         165 VTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQD--QLERIFLVLGTPNEDTWPGVHSLP-HFKPE  241 (303)
T ss_pred             ccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHH--HHHHHHHHhCCCChhhccchhhcc-ccccc
Confidence                          1134578999999999999999999976432111  1111111110000  000  0000 00000


Q ss_pred             -CCCCCCh---------HHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          545 -LESFYPI---------DGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       545 -l~~~~~~---------~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       .....+.         .....+.+|+..|++.||++|||+.|++++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~h  288 (303)
T cd07869         242 RFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALSH  288 (303)
T ss_pred             cccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhcC
Confidence             0000000         112356799999999999999999999874

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.97  E-value=7.9e-30  Score=256.37  Aligned_cols=207  Identities=27%  Similarity=0.443  Sum_probs=166.2

Q ss_pred             ceEEEEEE-CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      +.||++.. +|+.||+|.++        ..+.+|++++++++|+||+++++++.+. ...++|+||+++++|.+++....
T Consensus         9 g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-~~~~~v~e~~~~~~l~~~l~~~~   87 (251)
T cd05041           9 GDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQK-QPIYIVMELVPGGSLLTFLRKKK   87 (251)
T ss_pred             ceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecC-CCeEEEEEcCCCCcHHHHHHhcC
Confidence            47999988 48999999875        2477899999999999999999998754 47899999999999999997543


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                      .         .+++..+..++.+++.||.|||+++   ++||||||+||+++.++.+||+|||+++...           
T Consensus        88 ~---------~~~~~~~~~~~~~~~~~l~~lH~~~---i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~  155 (251)
T cd05041          88 N---------RLTVKKLLQMSLDAAAGMEYLESKN---CIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLK  155 (251)
T ss_pred             C---------CCCHHHHHHHHHHHHHHHHHHHhCC---EehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccC
Confidence            2         3789999999999999999999998   9999999999999999999999999886432           


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                    ...+.++|||||||++|||++ |..|+........       .          ..+..    ....
T Consensus       156 ~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~~-------~----------~~~~~----~~~~  214 (251)
T cd05041         156 QIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQT-------R----------ERIES----GYRM  214 (251)
T ss_pred             cceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHHHH-------H----------HHHhc----CCCC
Confidence                          123467999999999999999 7778755432110       0          01111    1111


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      ..+......+.+++.+|++.+|.+||++.|+++.|.
T Consensus       215 ~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~  250 (251)
T cd05041         215 PAPQLCPEEIYRLMLQCWAYDPENRPSFSEIYNELQ  250 (251)
T ss_pred             CCCccCCHHHHHHHHHHhccChhhCcCHHHHHHHhh
Confidence            123344557899999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.97  E-value=4.7e-30  Score=266.19  Aligned_cols=221  Identities=23%  Similarity=0.404  Sum_probs=168.4

Q ss_pred             ceEEEEEE---------CCeEEEEEEccH--------HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCC
Q 047629          343 KSVYRATI---------DGKVLAVKKIKE--------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGS  404 (615)
Q Consensus       343 ~~Vy~~~~---------~g~~vAvK~~~~--------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~Gs  404 (615)
                      |.||++..         ++..||+|.++.        ++.+|+.+++.+ +|+||+++++++... +..+++|||+++|+
T Consensus        29 g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~  107 (304)
T cd05101          29 GQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD-GPLYVIVEYASKGN  107 (304)
T ss_pred             ceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecC-CceEEEEecCCCCc
Confidence            48998864         245799998852        367899999999 899999999998754 47899999999999


Q ss_pred             HHHhhccCCCCCCCC------CcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCC
Q 047629          405 LDKWLHPKSKSSSSS------GSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA  478 (615)
Q Consensus       405 L~~~L~~~~~~~~~~------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  478 (615)
                      |.+++..........      .....++|.++..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||++
T Consensus       108 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~g---ivH~dlkp~Nili~~~~~~kl~D~g~~  184 (304)
T cd05101         108 LREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQK---CIHRDLAARNVLVTENNVMKIADFGLA  184 (304)
T ss_pred             HHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCC---eeecccccceEEEcCCCcEEECCCccc
Confidence            999997643211000      00124899999999999999999999998   999999999999999999999999998


Q ss_pred             CCCC-------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHH
Q 047629          479 APAT-------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEK  532 (615)
Q Consensus       479 ~~~~-------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~  532 (615)
                      +...                         ..++.++||||||+++|||++ |..|+.....   ..    +...      
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~---~~----~~~~------  251 (304)
T cd05101         185 RDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV---EE----LFKL------  251 (304)
T ss_pred             eecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCH---HH----HHHH------
Confidence            5321                         113568999999999999998 7777754321   01    1110      


Q ss_pred             HHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          533 REERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       533 ~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                          +....    ....+......+.+++.+||+.+|.+||+|.|+++.|.++...
T Consensus       252 ----~~~~~----~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~  299 (304)
T cd05101         252 ----LKEGH----RMDKPANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRILTL  299 (304)
T ss_pred             ----HHcCC----cCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHHHHh
Confidence                11000    0112334456688999999999999999999999999887654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.97  E-value=3.5e-30  Score=269.92  Aligned_cols=203  Identities=22%  Similarity=0.337  Sum_probs=160.9

Q ss_pred             ceEEEEEE-----CCeEEEEEEccH-----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI-----DGKVLAVKKIKE-----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~-----~g~~vAvK~~~~-----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      |.||++..     .|+.||||.++.           .+.+|+++|++++||||+++++++.. ++..++||||+++|+|.
T Consensus        10 g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~-~~~~~lv~e~~~~~~L~   88 (323)
T cd05584          10 GKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQT-GGKLYLILEYLSGGELF   88 (323)
T ss_pred             eEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEec-CCeEEEEEeCCCCchHH
Confidence            47998874     578999999863           24579999999999999999998875 45799999999999999


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----  482 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----  482 (615)
                      +++....          .+.+..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...    
T Consensus        89 ~~~~~~~----------~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  155 (323)
T cd05584          89 MHLEREG----------IFMEDTACFYLSEISLALEHLHQQG---IIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGT  155 (323)
T ss_pred             HHHHHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCCEEEeeCcCCeecccCCC
Confidence            9997643          2788888999999999999999998   9999999999999999999999999975320    


Q ss_pred             -------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCC
Q 047629          483 -------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDP  543 (615)
Q Consensus       483 -------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp  543 (615)
                                         ...+.++|||||||++|||++|+.||.......      .+.              .+...
T Consensus       156 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~~~------~~~--------------~~~~~  215 (323)
T cd05584         156 VTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKK------TID--------------KILKG  215 (323)
T ss_pred             cccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCHHH------HHH--------------HHHcC
Confidence                               113468999999999999999999997543210      001              11111


Q ss_pred             cCCCCCChHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHHH
Q 047629          544 NLESFYPIDGALSLATLARACTMDKSLSRP-----NMAEVVFN  581 (615)
Q Consensus       544 ~l~~~~~~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~~  581 (615)
                      ..  ..+......+.+++.+|++.||++||     ++.++++.
T Consensus       216 ~~--~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~h  256 (323)
T cd05584         216 KL--NLPPYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQSH  256 (323)
T ss_pred             CC--CCCCCCCHHHHHHHHHHcccCHhHcCCCCCCCHHHHhcC
Confidence            11  12333345678999999999999999     78887764

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.97  E-value=6.5e-30  Score=262.96  Aligned_cols=223  Identities=21%  Similarity=0.344  Sum_probs=159.5

Q ss_pred             ceEEEEEE---CCeEEEEEEccH---------HHHHHHHHHHhc---CCCCcccEEEEEEc----CCCcEEEEEeecCCC
Q 047629          343 KSVYRATI---DGKVLAVKKIKE---------DVTEELRILQRI---NHANLVKLMGVSSD----SQGNRFLVYEYAENG  403 (615)
Q Consensus       343 ~~Vy~~~~---~g~~vAvK~~~~---------~~~~Ei~~l~~l---~H~niv~l~g~~~~----~~~~~~lV~E~~~~G  403 (615)
                      |.||++..   .|+.||||+++.         .+.+|+++++++   +||||++++++|..    .....++|+||++ |
T Consensus        15 g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~-~   93 (290)
T cd07862          15 GKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD-Q   93 (290)
T ss_pred             eEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCCCcEEEEEccCC-C
Confidence            58999986   468899998752         356788887766   69999999998852    2335899999996 6


Q ss_pred             CHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-
Q 047629          404 SLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-  482 (615)
Q Consensus       404 sL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-  482 (615)
                      +|.+++......        .+++.++..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++... 
T Consensus        94 ~l~~~~~~~~~~--------~~~~~~~~~i~~qi~~aL~~lH~~~---iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  162 (290)
T cd07862          94 DLTTYLDKVPEP--------GVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARIYSF  162 (290)
T ss_pred             CHHHHHHhCCCC--------CCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEEcCCCCEEEccccceEeccC
Confidence            999999754321        3899999999999999999999998   9999999999999999999999999985421 


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhH--HHHHHHHH--
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV--EEKREERL--  537 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~--  537 (615)
                                           ..++.++|||||||++|||++|+.||......+..   ..+......  ........  
T Consensus       163 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~  239 (290)
T cd07862         163 QMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQL---GKILDVIGLPGEEDWPRDVAL  239 (290)
T ss_pred             CcccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHH---HHHHHHhCCCChhhchhhhcc
Confidence                                 12456899999999999999999999765432111   111111100  00000000  


Q ss_pred             -hhhcCCcCC---CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          538 -RNWMDPNLE---SFYPIDGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       538 -~~~~dp~l~---~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                       .....+...   .....+....+.+++.+|++.||++|||+.|+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  286 (290)
T cd07862         240 PRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  286 (290)
T ss_pred             cchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhc
Confidence             000000000   0001122345689999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.97  E-value=4e-30  Score=262.97  Aligned_cols=195  Identities=22%  Similarity=0.369  Sum_probs=151.4

Q ss_pred             eEEEEEEccH-------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCccccc
Q 047629          353 KVLAVKKIKE-------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFL  425 (615)
Q Consensus       353 ~~vAvK~~~~-------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l  425 (615)
                      ..||+|.+..       .+.+|+.++++++|+||++++|+|.+. ...++||||+++|+|..++.....         .+
T Consensus        45 ~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~~~~~~~~-~~~~lv~ey~~~g~L~~~l~~~~~---------~~  114 (274)
T cd05076          45 LRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFVHGVCVRG-SENIMVEEFVEHGPLDVCLRKEKG---------RV  114 (274)
T ss_pred             eeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeEEEEEEeC-CceEEEEecCCCCcHHHHHHhcCC---------CC
Confidence            4589998853       466789999999999999999999864 478999999999999999975432         38


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC-------cEEEeecCCCCCC-----------------
Q 047629          426 TWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF-------KAKIANFSLAAPA-----------------  481 (615)
Q Consensus       426 ~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-------~~kl~DFGla~~~-----------------  481 (615)
                      ++..+..++.|++.||+|||+++   |+||||||+|||++..+       .+|++|||++...                 
T Consensus       115 ~~~~~~~i~~qi~~~l~~lH~~~---iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~aPe~  191 (274)
T cd05076         115 PVAWKITVAQQLASALSYLEDKN---LVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSREERVERIPWIAPEC  191 (274)
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCC---ccCCCCCcccEEEeccCcccCccceeeecCCccccccccccccccCCcccCchh
Confidence            89999999999999999999987   99999999999997643       3799999987421                 


Q ss_pred             ---CCCCCCcccchhHHHHHHHHH-cCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHH
Q 047629          482 ---TNDVMPKFDVFAFGVVLLELL-SGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSL  557 (615)
Q Consensus       482 ---~~~~~~k~DV~SfGvvl~Ell-tG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l  557 (615)
                         ...++.++||||||+++|||+ +|+.|+......+..       ..+          ..  ...+    +......+
T Consensus       192 ~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~-------~~~----------~~--~~~~----~~~~~~~~  248 (274)
T cd05076         192 VPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSEKE-------RFY----------EK--KHRL----PEPSCKEL  248 (274)
T ss_pred             hcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChHHHH-------HHH----------Hh--ccCC----CCCCChHH
Confidence               012467899999999999995 688888654321110       000          00  0111    11122357


Q ss_pred             HHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          558 ATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       558 ~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      .+++.+||+.+|++||+|.||++.|+
T Consensus       249 ~~li~~cl~~~p~~Rps~~~il~~L~  274 (274)
T cd05076         249 ATLISQCLTYEPTQRPSFRTILRDLT  274 (274)
T ss_pred             HHHHHHHcccChhhCcCHHHHHHhhC
Confidence            89999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.97  E-value=4.2e-30  Score=267.03  Aligned_cols=222  Identities=25%  Similarity=0.408  Sum_probs=169.2

Q ss_pred             ceEEEEEEC---------CeEEEEEEccH--------HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCC
Q 047629          343 KSVYRATID---------GKVLAVKKIKE--------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGS  404 (615)
Q Consensus       343 ~~Vy~~~~~---------g~~vAvK~~~~--------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~Gs  404 (615)
                      +.||++...         +..+|+|.++.        ++.+|++++.++ +|+||+++++++... +..++||||+++|+
T Consensus        32 g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~  110 (307)
T cd05098          32 GQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD-GPLYVIVEYASKGN  110 (307)
T ss_pred             eeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecC-CceEEEEecCCCCc
Confidence            479988752         24699998862        366799999999 799999999998754 47999999999999


Q ss_pred             HHHhhccCCCCCC------CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCC
Q 047629          405 LDKWLHPKSKSSS------SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA  478 (615)
Q Consensus       405 L~~~L~~~~~~~~------~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  478 (615)
                      |.+++........      .......++|.++++++.|++.||+|||+++   ++||||||+||+++.++.+||+|||++
T Consensus       111 L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~g---i~H~dlkp~Nill~~~~~~kL~dfg~a  187 (307)
T cd05098         111 LREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKK---CIHRDLAARNVLVTEDNVMKIADFGLA  187 (307)
T ss_pred             HHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCC---cccccccHHheEEcCCCcEEECCCccc
Confidence            9999976432110      0000124899999999999999999999987   999999999999999999999999998


Q ss_pred             CCCC-------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHH
Q 047629          479 APAT-------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEK  532 (615)
Q Consensus       479 ~~~~-------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~  532 (615)
                      +...                         ...+.++|||||||++|||++ |+.|+.....       ..+...      
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~~-------~~~~~~------  254 (307)
T cd05098         188 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV-------EELFKL------  254 (307)
T ss_pred             ccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCCH-------HHHHHH------
Confidence            5321                         113567999999999999998 8888754321       001111      


Q ss_pred             HHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          533 REERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       533 ~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                          +..    ....+.+......+.+++.+||+.+|.+||+|.||++.|..+....
T Consensus       255 ----~~~----~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~~~~  303 (307)
T cd05098         255 ----LKE----GHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILALT  303 (307)
T ss_pred             ----HHc----CCCCCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHHHh
Confidence                110    0111223344557889999999999999999999999999887654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.97  E-value=6.4e-30  Score=257.82  Aligned_cols=206  Identities=25%  Similarity=0.473  Sum_probs=164.5

Q ss_pred             ceEEEEEE-CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      |.||++.+ +++.+|+|.++      .++.+|++++++++|+|++++++++... ...++|+||+++|+|.+++..... 
T Consensus        18 g~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-~~~~~v~e~~~~~~L~~~~~~~~~-   95 (256)
T cd05112          18 GLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTER-SPICLVFEFMEHGCLSDYLRAQRG-   95 (256)
T ss_pred             ceEEEEEEeCCCeEEEEECCCCCCCHHHHHHHHHHHHhCCCCCeeeEEEEEccC-CceEEEEEcCCCCcHHHHHHhCcc-
Confidence            48999987 57899999876      3588999999999999999999997654 478999999999999999975432 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------------  482 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------------  482 (615)
                              .++|..+..++.+++.||+|||+.+   ++||||||+||+++.++.+||+|||+++...             
T Consensus        96 --------~~~~~~~~~~~~~l~~~l~~lH~~~---i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~  164 (256)
T cd05112          96 --------KFSQETLLGMCLDVCEGMAYLESSN---VIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFP  164 (256)
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHCC---ccccccccceEEEcCCCeEEECCCcceeecccCcccccCCCccc
Confidence                    3889999999999999999999998   9999999999999999999999999875321             


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                 ...+.++||||||+++|||++ |+.|+......+   ...              .+.+...+    ..+
T Consensus       165 ~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~---~~~--------------~~~~~~~~----~~~  223 (256)
T cd05112         165 VKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNSE---VVE--------------TINAGFRL----YKP  223 (256)
T ss_pred             hhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCHHH---HHH--------------HHhCCCCC----CCC
Confidence                       123457999999999999998 898886533211   110              01110000    011


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      ......+.+++.+||+.+|++||++.|+++.|
T Consensus       224 ~~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l  255 (256)
T cd05112         224 RLASQSVYELMQHCWKERPEDRPSFSLLLHQL  255 (256)
T ss_pred             CCCCHHHHHHHHHHcccChhhCCCHHHHHHhh
Confidence            12235689999999999999999999999887

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.97  E-value=5.1e-30  Score=262.93  Aligned_cols=211  Identities=20%  Similarity=0.279  Sum_probs=162.5

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.+|+|.+..          .+..|++++++++|+||+++.+++.. +...++||||+++|+|.+++.
T Consensus         7 g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~-~~~~~lv~e~~~~g~L~~~~~   85 (280)
T cd05608           7 GEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQT-KTDLCLVMTIMNGGDLRYHIY   85 (280)
T ss_pred             eeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcC-CCeEEEEEeCCCCCCHHHHHH
Confidence            48999887  689999999853          24579999999999999999998764 447999999999999998885


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ......      ..+++..+..++.|++.||+|||+++   |+||||||+||+++.++.+||+|||+++...        
T Consensus        86 ~~~~~~------~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~  156 (280)
T cd05608          86 NVDEEN------PGFPEPRACFYTAQIISGLEHLHQRR---IIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKG  156 (280)
T ss_pred             hccccC------CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEeeCccceecCCCCccccc
Confidence            432211      13899999999999999999999998   9999999999999999999999999985321        


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ..++.++|||||||++|||++|+.||.........   ...             ........  .
T Consensus       157 ~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~---~~~-------------~~~~~~~~--~  218 (280)
T cd05608         157 YAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVEN---KEL-------------KQRILNDS--V  218 (280)
T ss_pred             cCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhH---HHH-------------HHhhcccC--C
Confidence                           12356899999999999999999999754321110   000             01111111  1


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRP-----NMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~~  581 (615)
                      .++......+.+++..|++.||++||     +++|++++
T Consensus       219 ~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~h  257 (280)
T cd05608         219 TYPDKFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRTH  257 (280)
T ss_pred             CCcccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhcC
Confidence            22334455688999999999999999     66777654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.97  E-value=3.9e-30  Score=262.93  Aligned_cols=203  Identities=23%  Similarity=0.371  Sum_probs=163.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      +.||+|..  +|+.||+|.++        +.+.+|++++++++|+||+++++++... ...++|+||+++|+|.+++...
T Consensus        18 ~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~~   96 (277)
T cd06642          18 GEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKG-TKLWIIMEYLGGGSALDLLKPG   96 (277)
T ss_pred             eeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccC-CceEEEEEccCCCcHHHHhhcC
Confidence            58999987  67899999875        2467899999999999999999998754 4799999999999999998642


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC---------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN---------  483 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~---------  483 (615)
                                 .+++..+..++.|++.||.|||+++   ++|+||+|+||++++++.+|++|||++.....         
T Consensus        97 -----------~~~~~~~~~~~~~i~~~l~~lH~~~---ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~  162 (277)
T cd06642          97 -----------PLEETYIATILREILKGLDYLHSER---KIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFV  162 (277)
T ss_pred             -----------CCCHHHHHHHHHHHHHHHHHHhcCC---eeccCCChheEEEeCCCCEEEccccccccccCcchhhhccc
Confidence                       2889999999999999999999987   99999999999999999999999998854311         


Q ss_pred             --------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          484 --------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       484 --------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                    ..+.++||||||+++|||++|+.|+.........      .           .+.....+.+    
T Consensus       163 ~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~------~-----------~~~~~~~~~~----  221 (277)
T cd06642         163 GTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRVL------F-----------LIPKNSPPTL----  221 (277)
T ss_pred             CcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhhHH------h-----------hhhcCCCCCC----
Confidence                          1356899999999999999999998643321100      0           0111112222    


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +......+.+++.+||+.+|++||+|.|++.+
T Consensus       222 ~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06642         222 EGQYSKPFKEFVEACLNKDPRFRPTAKELLKH  253 (277)
T ss_pred             CcccCHHHHHHHHHHccCCcccCcCHHHHHHh
Confidence            22344568899999999999999999999985

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.97  E-value=3.9e-30  Score=283.73  Aligned_cols=208  Identities=20%  Similarity=0.294  Sum_probs=162.2

Q ss_pred             ceEEEEEE--C-CeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--D-GKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~-g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      +.||++..  + ++.||+|.+.       ..+.+|+.+|++++|||||++++++... +..+|||||+++|+|.++|+..
T Consensus        81 g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~-~~~~lv~E~~~gg~L~~~l~~~  159 (478)
T PTZ00267         81 TAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSD-DKLLLIMEYGSGGDLNKQIKQR  159 (478)
T ss_pred             cEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEEC-CEEEEEEECCCCCCHHHHHHHH
Confidence            58999876  3 6788998763       2367799999999999999999998754 5899999999999999988653


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                      ....      ..+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...          
T Consensus       160 ~~~~------~~l~~~~~~~i~~qi~~aL~~lH~~~---ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~~~~~~  230 (478)
T PTZ00267        160 LKEH------LPFQEYEVGLLFYQIVLALDEVHSRK---MMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASS  230 (478)
T ss_pred             Hhcc------CCCCHHHHHHHHHHHHHHHHHHHhCC---EEECCcCHHhEEECCCCcEEEEeCcCceecCCccccccccc
Confidence            2110      14889999999999999999999997   9999999999999999999999999986431          


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ..++.++|||||||++|||++|+.|+......   ..   +..          .+....+     
T Consensus       231 ~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~~---~~---~~~----------~~~~~~~-----  289 (478)
T PTZ00267        231 FCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQR---EI---MQQ----------VLYGKYD-----  289 (478)
T ss_pred             cCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHH---HH---HHH----------HHhCCCC-----
Confidence                           11456899999999999999999998653311   00   010          0111111     


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..+......+.+++..||+.||++||++.|++..
T Consensus       290 ~~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~~  323 (478)
T PTZ00267        290 PFPCPVSSGMKALLDPLLSKNPALRPTTQQLLHT  323 (478)
T ss_pred             CCCccCCHHHHHHHHHHhccChhhCcCHHHHHhC
Confidence            1222334568999999999999999999998753

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.97  E-value=7.5e-30  Score=257.47  Aligned_cols=208  Identities=27%  Similarity=0.388  Sum_probs=164.6

Q ss_pred             ceEEEEEEC---C--eEEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATID---G--KVLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~~---g--~~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      +.||+|.+.   +  ..||||.++.        ++.+|+.++++++|+||+++++++.+  ...++|+||+++|+|.+++
T Consensus         9 ~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~~v~e~~~~~~L~~~l   86 (257)
T cd05040           9 GVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT--HPLMMVTELAPLGSLLDRL   86 (257)
T ss_pred             ccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC--CeEEEEEEecCCCcHHHHH
Confidence            489999872   2  3699998863        46689999999999999999999875  5789999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------  483 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------  483 (615)
                      ......        .++|..+..++.|++.||+|||+.+   ++||||||+||+++.++.+||+|||+++....      
T Consensus        87 ~~~~~~--------~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~  155 (257)
T cd05040          87 RKDALG--------HFLISTLCDYAVQIANGMRYLESKR---FIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYV  155 (257)
T ss_pred             Hhcccc--------cCcHHHHHHHHHHHHHHHHHHHhCC---ccccccCcccEEEecCCEEEecccccccccccccccee
Confidence            765421        3899999999999999999999998   99999999999999999999999998864321      


Q ss_pred             --------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          484 --------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       484 --------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                          .++.++||||||+++|||++ |+.|+......+   ...   .           +.. ..
T Consensus       156 ~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~---~~~---~-----------~~~-~~  217 (257)
T cd05040         156 MEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQ---ILK---K-----------IDK-EG  217 (257)
T ss_pred             cccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHH---HHH---H-----------HHh-cC
Confidence                                13457999999999999999 999986433211   000   0           000 00


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      ..+  ..+...+..+.+++.+|++.+|++||++.|+++.|.
T Consensus       218 ~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  256 (257)
T cd05040         218 ERL--ERPEACPQDIYNVMLQCWAHNPADRPTFAALREFLP  256 (257)
T ss_pred             CcC--CCCccCCHHHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence            011  112233456889999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.97  E-value=2.2e-30  Score=276.61  Aligned_cols=214  Identities=21%  Similarity=0.236  Sum_probs=165.1

Q ss_pred             cccccccccc----ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEE
Q 047629          333 MNLSEHYSIG----KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLV  396 (615)
Q Consensus       333 ~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV  396 (615)
                      .+|.....+|    |.||++..  +|+.||+|.+++          .+.+|+.+++.++|+||+++++++.+. ...++|
T Consensus        43 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~-~~~~lv  121 (370)
T cd05596          43 EDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDD-KYLYMV  121 (370)
T ss_pred             HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecC-CEEEEE
Confidence            3444444454    48999887  688999999853          256799999999999999999987654 479999


Q ss_pred             EeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecC
Q 047629          397 YEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFS  476 (615)
Q Consensus       397 ~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  476 (615)
                      |||+++|+|.+++....           ++...+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||
T Consensus       122 ~Ey~~gg~L~~~l~~~~-----------l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDLkp~NILl~~~~~~kL~DfG  187 (370)
T cd05596         122 MEYMPGGDLVNLMSNYD-----------IPEKWARFYTAEVVLALDAIHSMG---FIHRDVKPDNMLLDKSGHLKLADFG  187 (370)
T ss_pred             EcCCCCCcHHHHHHhcC-----------CCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEEcCCCCEEEEecc
Confidence            99999999999986532           677888889999999999999998   9999999999999999999999999


Q ss_pred             CCCCCCC----------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHh
Q 047629          477 LAAPATN----------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLK  528 (615)
Q Consensus       477 la~~~~~----------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~  528 (615)
                      +++....                            .++.++|||||||++|||++|+.||......   ...        
T Consensus       188 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~---~~~--------  256 (370)
T cd05596         188 TCMKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLV---GTY--------  256 (370)
T ss_pred             ceeeccCCCcccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCHH---HHH--------
Confidence            9753210                            1356899999999999999999999754321   001        


Q ss_pred             HHHHHHHHHhhhcCCcCCCCCCh--HHHHHHHHHHHHhhhcCCCC--CCCHHHHHHH
Q 047629          529 VEEKREERLRNWMDPNLESFYPI--DGALSLATLARACTMDKSLS--RPNMAEVVFN  581 (615)
Q Consensus       529 ~~~~~~~~~~~~~dp~l~~~~~~--~~~~~l~~l~~~C~~~dP~~--RPsm~ev~~~  581 (615)
                               .++++..-.-.++.  .....+.+++..|++.+|.+  ||++.|++++
T Consensus       257 ---------~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~h  304 (370)
T cd05596         257 ---------SKIMDHKNSLTFPDDIEISKQAKDLICAFLTDREVRLGRNGVDEIKSH  304 (370)
T ss_pred             ---------HHHHcCCCcCCCCCcCCCCHHHHHHHHHHccChhhccCCCCHHHHhcC
Confidence                     11111000001111  23456789999999999988  9999999875

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.97  E-value=1.9e-30  Score=285.82  Aligned_cols=211  Identities=25%  Similarity=0.379  Sum_probs=171.8

Q ss_pred             eEEEEEE-C-CeEEEEEEcc-------HHHHHHHHHHHhcC-CCCcccEEEE-EEcC--C---CcEEEEEeecCCCCHHH
Q 047629          344 SVYRATI-D-GKVLAVKKIK-------EDVTEELRILQRIN-HANLVKLMGV-SSDS--Q---GNRFLVYEYAENGSLDK  407 (615)
Q Consensus       344 ~Vy~~~~-~-g~~vAvK~~~-------~~~~~Ei~~l~~l~-H~niv~l~g~-~~~~--~---~~~~lV~E~~~~GsL~~  407 (615)
                      .||.+.. . |..+|+|++-       +.+.+||++|++|+ |+|||.+++. ....  +   -+.+|.||||++|+|-+
T Consensus        52 ~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~EvllLmEyC~gg~Lvd  131 (738)
T KOG1989|consen   52 QVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEVLLLMEYCKGGSLVD  131 (738)
T ss_pred             EEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEEEeehhhccCCcHHH
Confidence            7999998 3 4899999984       34789999999996 9999999993 2211  1   24789999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC------
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA------  481 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~------  481 (615)
                      ++......        .|++.++++|+.|+++|+.+||.. .|+|||||||.+||||+.++..||||||.|...      
T Consensus       132 ~mn~Rlq~--------~lte~eVLkIf~dv~~AVa~mH~~-~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~  202 (738)
T KOG1989|consen  132 FMNTRLQT--------RLTEDEVLKIFYDVCEAVAAMHYL-KPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSPTS  202 (738)
T ss_pred             HHHHHHhc--------cCChHHHHHHHHHHHHHHHHHhcC-CCccchhhhhhhheEEcCCCCEEeCcccccccccCCCcc
Confidence            99865432        399999999999999999999998 688999999999999999999999999988421      


Q ss_pred             -----------------------------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHH
Q 047629          482 -----------------------------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEK  532 (615)
Q Consensus       482 -----------------------------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~  532 (615)
                                                   ...+++|+||||+||+||-|+....||+....                   
T Consensus       203 ~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~-------------------  263 (738)
T KOG1989|consen  203 AQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGK-------------------  263 (738)
T ss_pred             HHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcc-------------------
Confidence                                         11256899999999999999999999976421                   


Q ss_pred             HHHHHhhhcCCcCCCCCC--hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          533 REERLRNWMDPNLESFYP--IDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       533 ~~~~~~~~~dp~l~~~~~--~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                           ..+++.+.  .+|  ......+.+|++.||+.||++||++-||++.+.++....
T Consensus       264 -----laIlng~Y--~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~~~  315 (738)
T KOG1989|consen  264 -----LAILNGNY--SFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELANKP  315 (738)
T ss_pred             -----eeEEeccc--cCCCCccHHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHhcCC
Confidence                 01122111  122  356678999999999999999999999999998887653

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.97  E-value=5.5e-30  Score=262.98  Aligned_cols=225  Identities=24%  Similarity=0.391  Sum_probs=165.9

Q ss_pred             ceEEEEEE------CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCC-CcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI------DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQ-GNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~------~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~-~~~~lV~E~~~~GsL~~  407 (615)
                      +.||.+.+      +++.||+|.++        ..+.+|++++++++|+|++++.+++.+.+ ...++||||+++|+|.+
T Consensus        18 g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~g~~L~~   97 (284)
T cd05079          18 GKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKE   97 (284)
T ss_pred             eeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceEEEEEccCCCCHHH
Confidence            47998874      47889999986        34778999999999999999999987542 35899999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++.....         .++|.++..++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++...     
T Consensus        98 ~l~~~~~---------~~~~~~~~~i~~~i~~aL~~lH~~g---i~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~  165 (284)
T cd05079          98 YLPRNKN---------KINLKQQLKYAVQICKGMDYLGSRQ---YVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEY  165 (284)
T ss_pred             HHHhccC---------CCCHHHHHHHHHHHHHHHHHHHHCC---eeecccchheEEEcCCCCEEECCCccccccccCccc
Confidence            9965432         3899999999999999999999998   9999999999999999999999999885321     


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                           ..++.++||||||+++|||++++.|.......    ..+..... ..+.. .....+.+
T Consensus       166 ~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~----~~~~~~~~-~~~~~-~~~~~~~~  239 (284)
T cd05079         166 YTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTL----FLKMIGPT-HGQMT-VTRLVRVL  239 (284)
T ss_pred             eeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccch----hhhhcccc-ccccc-HHHHHHHH
Confidence                                 12456899999999999999988764321110    00000000 00000 00000000


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      ........+......+.+++.+|++.||++||++.|+++.|+.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         240 EEGKRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             HcCccCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence            00001111233456789999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.97  E-value=4.3e-30  Score=260.92  Aligned_cols=209  Identities=25%  Similarity=0.362  Sum_probs=163.0

Q ss_pred             ceEEEEEE--CCeEEEEEEccH-------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE-------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~-------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      +.||+|..  +|+.||+|+++.       .+.+|+.++++++|+||+++++++... +..++|+||+++|+|.++++...
T Consensus        23 g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~-~~~~iv~e~~~~~~L~~~~~~~~  101 (267)
T cd06646          23 GDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSR-EKLWICMEYCGGGSLQDIYHVTG  101 (267)
T ss_pred             eEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeC-CEEEEEEeCCCCCcHHHHHHhcC
Confidence            48999997  789999998852       366899999999999999999998754 47899999999999999987543


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                                .+++.++..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||+++...           
T Consensus       102 ----------~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~  168 (267)
T cd06646         102 ----------PLSELQIAYVCRETLQGLAYLHSKG---KMHRDIKGANILLTDNGDVKLADFGVAAKITATIAKRKSFIG  168 (267)
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEECCCCCEEECcCccceeecccccccCcccc
Confidence                      2889999999999999999999987   9999999999999999999999999875321           


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ...+.++|||||||++|||++|+.|+......+....+               ....+..+.+..
T Consensus       169 ~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~~~~~---------------~~~~~~~~~~~~  233 (267)
T cd06646         169 TPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLM---------------SKSNFQPPKLKD  233 (267)
T ss_pred             CccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchhhhheee---------------ecCCCCCCCCcc
Confidence                           01345799999999999999999998543211100000               000111111111


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                        .......+.+++.+||+.+|++||+++++++.|
T Consensus       234 --~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~l  266 (267)
T cd06646         234 --KTKWSSTFHNFVKISLTKNPKKRPTAERLLTHL  266 (267)
T ss_pred             --ccccCHHHHHHHHHHhhCChhhCcCHHHHhcCC
Confidence              112235688999999999999999999998754

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.97  E-value=8.7e-30  Score=261.06  Aligned_cols=216  Identities=24%  Similarity=0.411  Sum_probs=165.5

Q ss_pred             ceEEEEEE-------CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI-------DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~-------~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||++..       ++..+|+|.++       .++.+|++++++++|+||+++++++.+. +..++++||+++|+|.++
T Consensus        19 g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~   97 (280)
T cd05092          19 GKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEG-RPLLMVFEYMRHGDLNRF   97 (280)
T ss_pred             CeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecC-CceEEEEecCCCCCHHHH
Confidence            48998863       35689999875       3588899999999999999999998754 478999999999999999


Q ss_pred             hccCCCCCC-----CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-
Q 047629          409 LHPKSKSSS-----SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-  482 (615)
Q Consensus       409 L~~~~~~~~-----~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-  482 (615)
                      +........     .......+++.+++.++.|++.||+|||+.+   ++||||||+|||+++++.+||+|||+++... 
T Consensus        98 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~---i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~  174 (280)
T cd05092          98 LRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLH---FVHRDLATRNCLVGQGLVVKIGDFGMSRDIYS  174 (280)
T ss_pred             HHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCC---eecccccHhhEEEcCCCCEEECCCCceeEcCC
Confidence            976432100     0001124899999999999999999999998   9999999999999999999999999875320 


Q ss_pred             ------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHH
Q 047629          483 ------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERL  537 (615)
Q Consensus       483 ------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  537 (615)
                                              ...+.++|||||||++|||++ |+.|+......+.      +.           ..
T Consensus       175 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~------~~-----------~~  237 (280)
T cd05092         175 TDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEA------IE-----------CI  237 (280)
T ss_pred             CceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCHHHH------HH-----------HH
Confidence                                    124568999999999999998 8888864332111      00           01


Q ss_pred             hhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          538 RNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       538 ~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      .....+    ..+......+.+++.+||+.||.+||++.||.+.|+
T Consensus       238 ~~~~~~----~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~  279 (280)
T cd05092         238 TQGREL----ERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHSRLQ  279 (280)
T ss_pred             HcCccC----CCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHh
Confidence            111111    112233456789999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.97  E-value=1.5e-29  Score=261.39  Aligned_cols=214  Identities=25%  Similarity=0.433  Sum_probs=159.5

Q ss_pred             CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCC-CCcc
Q 047629          352 GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSS-SGSV  422 (615)
Q Consensus       352 g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~-~~~~  422 (615)
                      +..+|+|.++        .++.+|++++++++|+||+++++++... +..++||||+++|+|.+++......... ....
T Consensus        46 ~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~  124 (296)
T cd05095          46 PVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRLLAVCITS-DPLCMITEYMENGDLNQFLSRHEPQEAAEKADV  124 (296)
T ss_pred             eeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecC-CccEEEEEeCCCCcHHHHHHhcCcccccccccc
Confidence            3568999886        2477899999999999999999998754 4789999999999999999764422111 1112


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------------------
Q 047629          423 IFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------------------  482 (615)
Q Consensus       423 ~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------------------  482 (615)
                      ..+++.++..++.|++.||+|||+++   ++||||||+|||++.++.+||+|||+++...                    
T Consensus       125 ~~~~~~~~~~~~~~i~~al~~lH~~~---i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~p  201 (296)
T cd05095         125 VTISYSTLIFMATQIASGMKYLSSLN---FVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSW  201 (296)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHCC---eecccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCH
Confidence            34889999999999999999999998   9999999999999999999999999986421                    


Q ss_pred             -----CCCCCcccchhHHHHHHHHHc--CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHH
Q 047629          483 -----NDVMPKFDVFAFGVVLLELLS--GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGAL  555 (615)
Q Consensus       483 -----~~~~~k~DV~SfGvvl~Ellt--G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~  555 (615)
                           ..++.++|||||||++|||++  |..|+......+.   +......+.      ........     ..+..+..
T Consensus       202 e~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~~---~~~~~~~~~------~~~~~~~~-----~~~~~~~~  267 (296)
T cd05095         202 ESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQV---IENTGEFFR------DQGRQVYL-----PKPALCPD  267 (296)
T ss_pred             HHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccChHHH---HHHHHHHHh------hccccccC-----CCCCCCCH
Confidence                 113568999999999999998  6677754332111   111111000      00000000     11223346


Q ss_pred             HHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          556 SLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       556 ~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      .+.+++.+||+.||++||+|.||++.|+
T Consensus       268 ~~~~li~~cl~~~p~~Rp~~~~i~~~l~  295 (296)
T cd05095         268 SLYKLMLSCWRRNAKERPSFQEIHATLL  295 (296)
T ss_pred             HHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence            7899999999999999999999999886

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.97  E-value=1e-29  Score=257.35  Aligned_cols=208  Identities=25%  Similarity=0.402  Sum_probs=165.0

Q ss_pred             ceEEEEEE-CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      +.||++.. ++..+|+|.++      ..+.+|++++++++|+||+++.+++.+  ...+++|||+++|+|.+++......
T Consensus        20 ~~vy~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~--~~~~~v~e~~~~~~L~~~~~~~~~~   97 (260)
T cd05073          20 GEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTK--EPIYIITEFMAKGSLLDFLKSDEGS   97 (260)
T ss_pred             eEEEEEEecCCccEEEEecCCChhHHHHHHHHHHHHHhcCCCCcceEEEEEcC--CCeEEEEEeCCCCcHHHHHHhCCcc
Confidence            58999987 56789999875      347789999999999999999998765  4689999999999999999764321


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------------  482 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------------  482 (615)
                              .++|.++..++.|++.||.|||+.+   ++||||||+||+++.++.+||+|||++....             
T Consensus        98 --------~~~~~~~~~~~~~l~~aL~~lH~~~---i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~  166 (260)
T cd05073          98 --------KQPLPKLIDFSAQIAEGMAFIEQRN---YIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFP  166 (260)
T ss_pred             --------ccCHHHHHHHHHHHHHHHHHHHhCC---ccccccCcceEEEcCCCcEEECCCcceeeccCCCcccccCCccc
Confidence                    3789999999999999999999987   9999999999999999999999999875321             


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                 ...+.++|||||||++||+++ |+.|+.......   +..              .+..-..    ...+
T Consensus       167 ~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~---~~~--------------~~~~~~~----~~~~  225 (260)
T cd05073         167 IKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPE---VIR--------------ALERGYR----MPRP  225 (260)
T ss_pred             ccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCHHH---HHH--------------HHhCCCC----CCCc
Confidence                       113457999999999999999 888886543211   110              0111001    1112


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHh
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLSV  584 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~  584 (615)
                      ......+.+++.+|++.+|++||++.++.+.|+.
T Consensus       226 ~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~  259 (260)
T cd05073         226 ENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD  259 (260)
T ss_pred             ccCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence            2334568899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.97  E-value=1e-29  Score=265.15  Aligned_cols=221  Identities=25%  Similarity=0.438  Sum_probs=168.4

Q ss_pred             ceEEEEEE---------CCeEEEEEEccH--------HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCC
Q 047629          343 KSVYRATI---------DGKVLAVKKIKE--------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGS  404 (615)
Q Consensus       343 ~~Vy~~~~---------~g~~vAvK~~~~--------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~Gs  404 (615)
                      +.||++..         .+..+|+|.++.        ++..|+++++++ +|+||+++++++.+ ++..++++||+++|+
T Consensus        26 g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~-~~~~~lv~e~~~~g~  104 (314)
T cd05099          26 GQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQ-EGPLYVIVEYAAKGN  104 (314)
T ss_pred             ccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEcc-CCceEEEEecCCCCc
Confidence            47998864         245799998762        467899999999 69999999999875 447899999999999


Q ss_pred             HHHhhccCCCCCCC------CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCC
Q 047629          405 LDKWLHPKSKSSSS------SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA  478 (615)
Q Consensus       405 L~~~L~~~~~~~~~------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  478 (615)
                      |.+++.........      ......++|.++..++.|++.||.|||+++   ++||||||+|||++.++.+||+|||++
T Consensus       105 L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~g---i~H~dlkp~Nill~~~~~~kL~Dfg~~  181 (314)
T cd05099         105 LREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRR---CIHRDLAARNVLVTEDNVMKIADFGLA  181 (314)
T ss_pred             HHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCC---eeeccccceeEEEcCCCcEEEcccccc
Confidence            99999764321000      001124899999999999999999999988   999999999999999999999999998


Q ss_pred             CCCC-------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHH
Q 047629          479 APAT-------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEK  532 (615)
Q Consensus       479 ~~~~-------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~  532 (615)
                      +...                         ..++.++|||||||++|||++ |+.|+......+   ..    .       
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~---~~----~-------  247 (314)
T cd05099         182 RGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVEE---LF----K-------  247 (314)
T ss_pred             ccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCHHH---HH----H-------
Confidence            6431                         113568999999999999999 888885433110   11    0       


Q ss_pred             HHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          533 REERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       533 ~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                         .+....    ....+......+.+++.+||+.+|++||++.|+++.|..+...
T Consensus       248 ---~~~~~~----~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~~~  296 (314)
T cd05099         248 ---LLREGH----RMDKPSNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKVLAA  296 (314)
T ss_pred             ---HHHcCC----CCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHH
Confidence               011100    1122334445688999999999999999999999999887654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.97  E-value=3e-30  Score=270.55  Aligned_cols=203  Identities=24%  Similarity=0.340  Sum_probs=161.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||+|.++..          +..|++++.+++|+||+++.+++... +..++||||+++|+|..++.
T Consensus         9 g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~-~~~~lv~E~~~~~~L~~~l~   87 (325)
T cd05594           9 GKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTH-DRLCFVMEYANGGELFFHLS   87 (325)
T ss_pred             EEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcC-CEEEEEEeCCCCCcHHHHHH
Confidence            58999886  7899999998642          45688999999999999999987654 47999999999999999987


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHh-CCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE-HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      ...          .+++.++..++.|++.||.|||+ .+   |+||||||+|||++.++.+||+|||+++...       
T Consensus        88 ~~~----------~l~~~~~~~~~~qi~~aL~~lH~~~~---ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~  154 (325)
T cd05594          88 RER----------VFSEDRARFYGAEIVSALDYLHSEKN---VVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMK  154 (325)
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHhcCC---EEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcccc
Confidence            543          38999999999999999999997 56   9999999999999999999999999875321       


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                      ..++.++|||||||++|||++|+.||.......   ..    ...         ..  ....  
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~~---~~----~~i---------~~--~~~~--  214 (325)
T cd05594         155 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK---LF----ELI---------LM--EEIR--  214 (325)
T ss_pred             cccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCCHHH---HH----HHH---------hc--CCCC--
Confidence                            124568999999999999999999996543211   00    000         00  0111  


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRP-----NMAEVVFN  581 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~~  581 (615)
                        ++......+.+++.+|++.||++|+     ++.|++++
T Consensus       215 --~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h  252 (325)
T cd05594         215 --FPRTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQH  252 (325)
T ss_pred             --CCCCCCHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhcC
Confidence              2223344578999999999999996     89999865

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.97  E-value=1.1e-29  Score=257.91  Aligned_cols=204  Identities=21%  Similarity=0.360  Sum_probs=156.6

Q ss_pred             ceEEEEEEC--------------CeEEEEEEccH-------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecC
Q 047629          343 KSVYRATID--------------GKVLAVKKIKE-------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAE  401 (615)
Q Consensus       343 ~~Vy~~~~~--------------g~~vAvK~~~~-------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~  401 (615)
                      +.||+|.+.              ...||+|.+..       .+.+|+.++++++||||+++++++.+. ...++||||++
T Consensus         9 ~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~-~~~~lv~e~~~   87 (262)
T cd05077           9 TQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRD-VENIMVEEFVE   87 (262)
T ss_pred             ceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-CCCEEEEeccc
Confidence            478888752              23589998752       467789999999999999999998754 47899999999


Q ss_pred             CCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCc-------EEEee
Q 047629          402 NGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK-------AKIAN  474 (615)
Q Consensus       402 ~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~-------~kl~D  474 (615)
                      +|+|..++.....         .+++..+++++.|++.||+|||+++   |+||||||+|||++.++.       +|++|
T Consensus        88 ~~~l~~~~~~~~~---------~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~Nill~~~~~~~~~~~~~~l~d  155 (262)
T cd05077          88 FGPLDLFMHRKSD---------VLTTPWKFKVAKQLASALSYLEDKD---LVHGNVCTKNILLAREGIDGECGPFIKLSD  155 (262)
T ss_pred             CCCHHHHHHhcCC---------CCCHHHHHHHHHHHHHHHHHhhhCC---eECCCCCcccEEEecCCccCCCCceeEeCC
Confidence            9999999875432         3899999999999999999999988   999999999999987654       89999


Q ss_pred             cCCCCCCC--------------------CCCCCcccchhHHHHHHHHH-cCCCCCCCCCCChhHHHHHHHHHHHhHHHHH
Q 047629          475 FSLAAPAT--------------------NDVMPKFDVFAFGVVLLELL-SGKKATRTTENGKTAVLWKEIREVLKVEEKR  533 (615)
Q Consensus       475 FGla~~~~--------------------~~~~~k~DV~SfGvvl~Ell-tG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~  533 (615)
                      ||++....                    ..++.++|||||||++|||+ .|+.|+......+.       ..        
T Consensus       156 ~g~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~-------~~--------  220 (262)
T cd05077         156 PGIPITVLSRQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAEK-------ER--------  220 (262)
T ss_pred             CCCCccccCcccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhHH-------HH--------
Confidence            99875321                    12456799999999999998 57777654321110       00        


Q ss_pred             HHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          534 EERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       534 ~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                         +.   .....  ........+.+|+..||+.||.+||++.||++.+
T Consensus       221 ---~~---~~~~~--~~~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~~  261 (262)
T cd05077         221 ---FY---EGQCM--LVTPSCKELADLMTHCMNYDPNQRPFFRAIMRDI  261 (262)
T ss_pred             ---HH---hcCcc--CCCCChHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence               00   00000  0111234678999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.97  E-value=1.6e-29  Score=258.79  Aligned_cols=211  Identities=22%  Similarity=0.395  Sum_probs=167.5

Q ss_pred             ceEEEEEE--CCe----EEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGK----VLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~----~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      +.||+|..  +|+    .+|+|.++        ..+.+|+.++++++|+||++++++|..  ...++|+||+++|+|.++
T Consensus        21 g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~--~~~~~v~e~~~~g~L~~~   98 (279)
T cd05057          21 GTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS--SQVQLITQLMPLGCLLDY   98 (279)
T ss_pred             ccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec--CceEEEEecCCCCcHHHH
Confidence            48999986  343    68999875        246789999999999999999999875  478999999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      +.....         .+++..+..++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++...      
T Consensus        99 l~~~~~---------~~~~~~~~~~~~qi~~~l~~LH~~~---i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~  166 (279)
T cd05057          99 VRNHKD---------NIGSQYLLNWCVQIAKGMSYLEEKR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEY  166 (279)
T ss_pred             HHhccC---------CCCHHHHHHHHHHHHHHHHHHHhCC---EEecccCcceEEEcCCCeEEECCCcccccccCcccce
Confidence            976543         3899999999999999999999987   9999999999999999999999999886431      


Q ss_pred             -------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          483 -------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       483 -------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                         ...+.++||||||+++||+++ |+.|+......+       +..          .+.... 
T Consensus       167 ~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~-------~~~----------~~~~~~-  228 (279)
T cd05057         167 HAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPAVE-------IPD----------LLEKGE-  228 (279)
T ss_pred             ecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCHHH-------HHH----------HHhCCC-
Confidence                               123457999999999999999 999986543111       111          111100 


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                         ....+..+...+.+++..||..||.+||++.++++.|..+...
T Consensus       229 ---~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~~~  271 (279)
T cd05057         229 ---RLPQPPICTIDVYMVLVKCWMIDAESRPTFKELINEFSKMARD  271 (279)
T ss_pred             ---CCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhC
Confidence               0111222335678999999999999999999999999887543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.97  E-value=8.8e-30  Score=260.79  Aligned_cols=212  Identities=18%  Similarity=0.244  Sum_probs=162.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.+|+|++..          .+..|++++++++|+||+++.+++.+ +...++||||+++|+|.+++.
T Consensus         7 g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~-~~~~~lv~e~~~g~~L~~~~~   85 (277)
T cd05607           7 GEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFES-KTHLCLVMSLMNGGDLKYHIY   85 (277)
T ss_pred             eEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEec-CCeEEEEEecCCCCCHHHHHH
Confidence            48999887  689999998853          23459999999999999999998765 447899999999999999886


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ....        ..+++..+..++.|++.||+|||+.+   ++||||||+||+++.++.+||+|||++....        
T Consensus        86 ~~~~--------~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~  154 (277)
T cd05607          86 NVGE--------RGLEMERVIHYSAQITCGILHLHSMD---IVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTITQR  154 (277)
T ss_pred             hccc--------cCCCHHHHHHHHHHHHHHHHHHHHCC---EEEccCChHhEEEcCCCCEEEeeceeeeecCCCceeecc
Confidence            5432        13889999999999999999999998   9999999999999999999999999875321        


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                    ..++.++|||||||++|||++|+.|+..........  . +.         ...+...+...    
T Consensus       155 ~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~--~-~~---------~~~~~~~~~~~----  218 (277)
T cd05607         155 AGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKE--E-LK---------RRTLEDEVKFE----  218 (277)
T ss_pred             CCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHH--H-HH---------HHhhccccccc----
Confidence                          124568999999999999999999986543211100  0 00         00111111100    


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                       .......+.+++..|++.||++||+++|+++.+.
T Consensus       219 -~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~~~  252 (277)
T cd05607         219 -HQNFTEESKDICRLFLAKKPEDRLGSREKNDDPR  252 (277)
T ss_pred             -cccCCHHHHHHHHHHhccCHhhCCCCccchhhhh
Confidence             0122345789999999999999999988765443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.97  E-value=5.6e-30  Score=268.09  Aligned_cols=203  Identities=24%  Similarity=0.375  Sum_probs=160.7

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|..  +|+.||||.++.+          +..|.+++..+ +|+||+++++++.+. +..++||||+++|+|..++
T Consensus         9 g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~-~~~~lv~E~~~~~~L~~~l   87 (321)
T cd05591           9 GKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTK-DRLFFVMEYVNGGDLMFQI   87 (321)
T ss_pred             eEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcC-CeEEEEEeCCCCCcHHHHH
Confidence            58999987  5789999998642          45688888876 899999999998754 4799999999999999998


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      ....          .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...       
T Consensus        88 ~~~~----------~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~  154 (321)
T cd05591          88 QRSR----------KFDEPRSRFYAAEVTLALMFLHRHG---VIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTT  154 (321)
T ss_pred             HHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHeEECCCCCEEEeecccceecccCCcccc
Confidence            7543          2889999999999999999999998   9999999999999999999999999875321       


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                      ..++.++|||||||++|||++|+.||......+   ...   ..          ...  +.   
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~~---~~~---~i----------~~~--~~---  213 (321)
T cd05591         155 TFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDD---LFE---SI----------LHD--DV---  213 (321)
T ss_pred             ccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCHHH---HHH---HH----------HcC--CC---
Confidence                            124568999999999999999999997543211   110   00          000  00   


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCC-------CHHHHHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRP-------NMAEVVFN  581 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RP-------sm~ev~~~  581 (615)
                       .++......+.+++..|++.||++||       ++.+++++
T Consensus       214 -~~p~~~~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~h  254 (321)
T cd05591         214 -LYPVWLSKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQH  254 (321)
T ss_pred             -CCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhcC
Confidence             12222334578999999999999999       78888765

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=2.6e-30  Score=273.45  Aligned_cols=206  Identities=23%  Similarity=0.285  Sum_probs=162.8

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||||+++.          .+.+|++++..++|+||+++++++.+. ...++||||+++|+|.+++.
T Consensus        15 g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~   93 (350)
T cd05573          15 GEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDE-EHLYLVMEYMPGGDLMNLLI   93 (350)
T ss_pred             EEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecC-CeEEEEEcCCCCCCHHHHHH
Confidence            58999998  589999999863          356799999999999999999988754 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------  483 (615)
                      ...          .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++....       
T Consensus        94 ~~~----------~l~~~~~~~i~~qi~~aL~~LH~~g---iiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~  160 (350)
T cd05573          94 RKD----------VFPEETARFYIAELVLALDSVHKLG---FIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYY  160 (350)
T ss_pred             HcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHeEECCCCCEEeecCCCCccCcccCccccc
Confidence            653          3889999999999999999999988   99999999999999999999999999864311       


Q ss_pred             ---------------------------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHH
Q 047629          484 ---------------------------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAV  518 (615)
Q Consensus       484 ---------------------------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~  518 (615)
                                                                   .++.++|||||||++|||++|+.||......+   
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~---  237 (350)
T cd05573         161 LNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQE---  237 (350)
T ss_pred             ccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCCHHH---
Confidence                                                         13568999999999999999999997544211   


Q ss_pred             HHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHH
Q 047629          519 LWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPN-MAEVVFN  581 (615)
Q Consensus       519 l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPs-m~ev~~~  581 (615)
                      .+   .           .+..+. ..+.-.........+.+++..|+. ||.+||+ +.|+++.
T Consensus       238 ~~---~-----------~i~~~~-~~~~~p~~~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~h  285 (350)
T cd05573         238 TY---N-----------KIINWK-ESLRFPPDPPVSPEAIDLICRLLC-DPEDRLGSFEEIKSH  285 (350)
T ss_pred             HH---H-----------HHhccC-CcccCCCCCCCCHHHHHHHHHHcc-ChhhcCCCHHHHhcC
Confidence            01   0           011100 001000001124567899999997 9999999 9999985

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.97  E-value=2e-30  Score=271.07  Aligned_cols=199  Identities=22%  Similarity=0.303  Sum_probs=157.8

Q ss_pred             ceEEEEEE-----CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI-----DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~-----~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||++..     +|+.+|+|+++.         .+..|++++++++|+||+++++++.+ ++..++||||+++|+|.++
T Consensus        10 g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-~~~~~lv~e~~~~~~L~~~   88 (318)
T cd05582          10 GKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQT-EGKLYLILDFLRGGDLFTR   88 (318)
T ss_pred             EEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEc-CCEEEEEEcCCCCCcHHHH
Confidence            47887753     578999999863         24569999999999999999999875 4579999999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      +....          .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...      
T Consensus        89 l~~~~----------~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~  155 (318)
T cd05582          89 LSKEV----------MFTEEDVKFYLAELALALDHLHSLG---IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKA  155 (318)
T ss_pred             HHHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHeEECCCCcEEEeeccCCcccCCCCCce
Confidence            96543          3899999999999999999999998   9999999999999999999999999986431      


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                       ...+.++|||||||++|||++|+.||......+   ..   ..              +.... 
T Consensus       156 ~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~---~~---~~--------------i~~~~-  214 (318)
T cd05582         156 YSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKE---TM---TM--------------ILKAK-  214 (318)
T ss_pred             ecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCHHH---HH---HH--------------HHcCC-
Confidence                             123568999999999999999999997543211   00   00              00000 


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAE  577 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~e  577 (615)
                       ...+......+.+++.+||+.||++||++.+
T Consensus       215 -~~~p~~~~~~~~~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         215 -LGMPQFLSPEAQSLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             -CCCCCCCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence             1122233445789999999999999999544

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=1.2e-30  Score=262.23  Aligned_cols=204  Identities=24%  Similarity=0.409  Sum_probs=164.8

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.|-++.-  .|+.||||.++++          +.+||+||+.++||||+.++.+|.+.+ .+.|||||..+|.|++|+.
T Consensus        67 GKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkd-KIvivMEYaS~GeLYDYiS  145 (668)
T KOG0611|consen   67 GKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKD-KIVIVMEYASGGELYDYIS  145 (668)
T ss_pred             cceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCc-eEEEEEEecCCccHHHHHH
Confidence            34555543  6899999998753          578999999999999999999987654 8999999999999999998


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND------  484 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~------  484 (615)
                      ..+.          |++.....+++||..++.|+|.++   ++|||||.+|||||.|+++||+||||+......      
T Consensus       146 er~~----------LsErEaRhfFRQIvSAVhYCHknr---VvHRDLKLENILLD~N~NiKIADFGLSNly~~~kfLqTF  212 (668)
T KOG0611|consen  146 ERGS----------LSEREARHFFRQIVSAVHYCHKNR---VVHRDLKLENILLDQNNNIKIADFGLSNLYADKKFLQTF  212 (668)
T ss_pred             Hhcc----------ccHHHHHHHHHHHHHHHHHHhhcc---ceecccchhheeecCCCCeeeeccchhhhhccccHHHHh
Confidence            8663          999999999999999999999998   999999999999999999999999998654211      


Q ss_pred             -----------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          485 -----------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       485 -----------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                       -.+.+|-||+||+||.|+.|..||++.+...   ++..+.         .+..+         
T Consensus       213 CGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dhk~---lvrQIs---------~GaYr---------  271 (668)
T KOG0611|consen  213 CGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDHKR---LVRQIS---------RGAYR---------  271 (668)
T ss_pred             cCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCchHHH---HHHHhh---------ccccc---------
Confidence                             2468999999999999999999998765211   111110         11111         


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                        ..+.+....-|+++++..||++|.|..+|..+..
T Consensus       272 --EP~~PSdA~gLIRwmLmVNP~RRATieDiAsHWW  305 (668)
T KOG0611|consen  272 --EPETPSDASGLIRWMLMVNPERRATIEDIASHWW  305 (668)
T ss_pred             --CCCCCchHHHHHHHHHhcCcccchhHHHHhhhhe
Confidence              1122233578899999999999999999998754

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.97  E-value=8.2e-30  Score=265.17  Aligned_cols=224  Identities=21%  Similarity=0.315  Sum_probs=164.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      +.||++..  +|+.+|+|.++        .++.+|++++.+++|+||+++++++.+ ++..++|+||+++|+|.+++...
T Consensus        15 g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~ey~~~~~L~~~l~~~   93 (308)
T cd06615          15 GVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYS-DGEISICMEHMDGGSLDQVLKKA   93 (308)
T ss_pred             eEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEee-CCEEEEEeeccCCCcHHHHHHhc
Confidence            48999987  67889999874        236789999999999999999999875 45899999999999999999765


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhC-CCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH-AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------  482 (615)
                      .          .+++..+..++.|++.||.|||+. +   ++||||||+|||++.++.+||+|||++....         
T Consensus        94 ~----------~~~~~~~~~~~~~i~~~l~~lH~~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~  160 (308)
T cd06615          94 G----------RIPENILGKISIAVLRGLTYLREKHK---IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVG  160 (308)
T ss_pred             C----------CCCHHHHHHHHHHHHHHHHHHHhhCC---EEECCCChHHEEEecCCcEEEccCCCcccccccccccCCC
Confidence            3          288999999999999999999984 5   9999999999999999999999999875421         


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH----------------HHHH
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE----------------EKRE  534 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~----------------~~~~  534 (615)
                                  ..++.++||||||+++|||++|+.|+...........+..........                ....
T Consensus       161 ~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (308)
T cd06615         161 TRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIF  240 (308)
T ss_pred             CcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcchhhHHHhhcCccccccccCCcccccCCCCCccchhhHH
Confidence                        124568999999999999999999986433211111000000000000                0000


Q ss_pred             HHHhhhc---CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          535 ERLRNWM---DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       535 ~~~~~~~---dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      ......+   .|.+..   ......+.+++.+|++.||++||++.||++..-
T Consensus       241 ~~~~~~~~~~~~~~~~---~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~  289 (308)
T cd06615         241 ELLDYIVNEPPPKLPS---GAFSDEFQDFVDKCLKKNPKERADLKELTKHPF  289 (308)
T ss_pred             HHHHHHhcCCCccCcC---cccCHHHHHHHHHHccCChhhCcCHHHHhcChh
Confidence            0011111   111111   012345889999999999999999999998754

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=6.8e-30  Score=262.73  Aligned_cols=209  Identities=21%  Similarity=0.275  Sum_probs=164.0

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||+|++..          .+.+|+.++++++|+||+++++++... ...++||||+++|+|.+++.
T Consensus        14 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~   92 (285)
T cd05605          14 GEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETK-DALCLVLTLMNGGDLKFHIY   92 (285)
T ss_pred             eEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCC-CeEEEEEeccCCCcHHHHHH
Confidence            58999987  689999998853          245799999999999999999988654 47999999999999999886


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      .....        .+++..+..++.|++.||.|||+.+   ++||||||+||++++++.++|+|||++....        
T Consensus        93 ~~~~~--------~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~  161 (285)
T cd05605          93 NMGNP--------GFDEERAVFYAAEITCGLEDLHRER---IVYRDLKPENILLDDYGHIRISDLGLAVEIPEGETIRGR  161 (285)
T ss_pred             hcCcC--------CCCHHHHHHHHHHHHHHHHHHHHCC---cEecCCCHHHEEECCCCCEEEeeCCCceecCCCCccccc
Confidence            53321        3899999999999999999999998   9999999999999999999999999886431        


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                    ...+.++|||||||++|||++|+.||........   ...+..          .+..     ....
T Consensus       162 ~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~---~~~~~~----------~~~~-----~~~~  223 (285)
T cd05605         162 VGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVK---REEVER----------RVKE-----DQEE  223 (285)
T ss_pred             cCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhhH---HHHHHH----------Hhhh-----cccc
Confidence                          1135679999999999999999999975432111   111110          1110     0112


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRP-----NMAEVVFN  581 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~~  581 (615)
                      ++......+.+|+..||+.||++||     ++++++++
T Consensus       224 ~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~  261 (285)
T cd05605         224 YSEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKAH  261 (285)
T ss_pred             cCcccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhcC
Confidence            2333445678999999999999999     78888665

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.97  E-value=1.9e-29  Score=256.88  Aligned_cols=215  Identities=24%  Similarity=0.393  Sum_probs=164.6

Q ss_pred             ceEEEEEE-----CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCCC-----cEEEEEeecCCC
Q 047629          343 KSVYRATI-----DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQG-----NRFLVYEYAENG  403 (615)
Q Consensus       343 ~~Vy~~~~-----~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~-----~~~lV~E~~~~G  403 (615)
                      +.||+|.+     +|+.||||.++.         ++.+|++++++++|+||+++++++...+.     ..++++||+++|
T Consensus        13 g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (273)
T cd05074          13 GSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLPIPMVILPFMKHG   92 (273)
T ss_pred             CCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcccceEEEEecCCCC
Confidence            48999986     368899998752         36789999999999999999998764321     247899999999


Q ss_pred             CHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC
Q 047629          404 SLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN  483 (615)
Q Consensus       404 sL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~  483 (615)
                      +|.+++........    ...+++..+.+++.|++.||+|||+.+   |+||||||+||+++.++.+|++|||+++....
T Consensus        93 ~l~~~~~~~~~~~~----~~~l~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~nili~~~~~~kl~dfg~~~~~~~  165 (273)
T cd05074          93 DLHTFLLMSRIGEE----PFTLPLQTLVRFMIDIASGMEYLSSKN---FIHRDLAARNCMLNENMTVCVADFGLSKKIYS  165 (273)
T ss_pred             cHHHHHHHhcccCC----CCCCCHHHHHHHHHHHHHHHHHHHhCC---EeecccchhhEEEcCCCCEEECcccccccccC
Confidence            99998864321111    123889999999999999999999987   99999999999999999999999999864311


Q ss_pred             -------------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHH
Q 047629          484 -------------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERL  537 (615)
Q Consensus       484 -------------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  537 (615)
                                               ..+.++||||||+++|||++ |+.|+......+   ....              +
T Consensus       166 ~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~~~---~~~~--------------~  228 (273)
T cd05074         166 GDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENSE---IYNY--------------L  228 (273)
T ss_pred             CcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCHHH---HHHH--------------H
Confidence                                     13457999999999999999 888876433211   1100              0


Q ss_pred             hhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          538 RNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       538 ~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      ......    ..+.+....+.+++.+||+.+|++||++.|+++.|+.+
T Consensus       229 ~~~~~~----~~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~  272 (273)
T cd05074         229 IKGNRL----KQPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQLELI  272 (273)
T ss_pred             HcCCcC----CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            000111    11223445789999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.97  E-value=9.1e-30  Score=272.97  Aligned_cols=206  Identities=20%  Similarity=0.316  Sum_probs=158.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||||+++.          .+.+|++++.+++|+||+++++++.+. ...++||||+++|+|.+++.
T Consensus        15 g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~-~~~~lv~E~~~gg~L~~~l~   93 (381)
T cd05626          15 GEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDK-DNLYFVMDYIPGGDMMSLLI   93 (381)
T ss_pred             EEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecC-CEEEEEEecCCCCcHHHHHH
Confidence            58999987  688999999853          256799999999999999999998764 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC---------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA---------  481 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~---------  481 (615)
                      ...          .+++.....++.|++.||+|||+.+   |+||||||+|||++.++.+||+|||+++..         
T Consensus        94 ~~~----------~~~e~~~~~~~~qi~~aL~~LH~~g---ivHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~  160 (381)
T cd05626          94 RME----------VFPEVLARFYIAELTLAIESVHKMG---FIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYY  160 (381)
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---eeecCCcHHHEEECCCCCEEEeeCcCCcccccccccccc
Confidence            643          2888999999999999999999998   999999999999999999999999986421         


Q ss_pred             -------------------------------------------------------------CCCCCCcccchhHHHHHHH
Q 047629          482 -------------------------------------------------------------TNDVMPKFDVFAFGVVLLE  500 (615)
Q Consensus       482 -------------------------------------------------------------~~~~~~k~DV~SfGvvl~E  500 (615)
                                                                                   ...++.++|||||||++||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~e  240 (381)
T cd05626         161 QKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFE  240 (381)
T ss_pred             cccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehhhHHHH
Confidence                                                                         0124568999999999999


Q ss_pred             HHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc-CCcCCCCCChHHHHHHHHHHHH--hhhcCCCCCCCHHH
Q 047629          501 LLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM-DPNLESFYPIDGALSLATLARA--CTMDKSLSRPNMAE  577 (615)
Q Consensus       501 lltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-dp~l~~~~~~~~~~~l~~l~~~--C~~~dP~~RPsm~e  577 (615)
                      |++|+.||......+..      .           .+..+. ......  .......+.+++..  |+..+|..||++.|
T Consensus       241 lltG~~Pf~~~~~~~~~------~-----------~i~~~~~~~~~~~--~~~~s~~~~dli~~ll~~~~~~~~R~~~~~  301 (381)
T cd05626         241 MLVGQPPFLAPTPTETQ------L-----------KVINWENTLHIPP--QVKLSPEAVDLITKLCCSAEERLGRNGADD  301 (381)
T ss_pred             HHhCCCCCcCCCHHHHH------H-----------HHHccccccCCCC--CCCCCHHHHHHHHHHccCcccccCCCCHHH
Confidence            99999999754421110      0           000000 001111  01122345566665  66777778999999


Q ss_pred             HHHH
Q 047629          578 VVFN  581 (615)
Q Consensus       578 v~~~  581 (615)
                      ++.+
T Consensus       302 ~l~h  305 (381)
T cd05626         302 IKAH  305 (381)
T ss_pred             HhcC
Confidence            9885

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.97  E-value=1.4e-29  Score=261.04  Aligned_cols=213  Identities=26%  Similarity=0.423  Sum_probs=158.8

Q ss_pred             eEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCC-CCccc
Q 047629          353 KVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSS-SGSVI  423 (615)
Q Consensus       353 ~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~-~~~~~  423 (615)
                      ..||+|.+.        +++.+|++++.+++|+||+++++++... +..++++||+++++|.+++......... .....
T Consensus        47 ~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~  125 (296)
T cd05051          47 VLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARLLGVCTVD-PPLCMIMEYMENGDLNQFLQKHVAETSGLACNSK  125 (296)
T ss_pred             eeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeEEEEEEecC-CCcEEEEecCCCCCHHHHHHhcccccccccccCC
Confidence            568999885        2467899999999999999999998754 5789999999999999999765421000 00112


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------------------
Q 047629          424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------------------  482 (615)
Q Consensus       424 ~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------------------  482 (615)
                      .+++..++.++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++...                     
T Consensus       126 ~~~~~~~~~~~~~i~~al~~LH~~~---i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  202 (296)
T cd05051         126 SLSFSTLLYMATQIASGMRYLESLN---FVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWE  202 (296)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHcC---ccccccchhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHH
Confidence            4899999999999999999999998   9999999999999999999999999986321                     


Q ss_pred             ----CCCCCcccchhHHHHHHHHHc--CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHH
Q 047629          483 ----NDVMPKFDVFAFGVVLLELLS--GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALS  556 (615)
Q Consensus       483 ----~~~~~k~DV~SfGvvl~Ellt--G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~  556 (615)
                          ...+.++||||||+++|||++  |..|+......   ..+......+           ...+.......+...+.+
T Consensus       203 ~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~---~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~  268 (296)
T cd05051         203 SVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTDQ---QVIENAGHFF-----------RDDGRQIYLPRPPNCPKD  268 (296)
T ss_pred             HhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcChH---HHHHHHHhcc-----------ccccccccCCCccCCCHH
Confidence                124568999999999999998  56676543321   1111111100           000111111122233457


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          557 LATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       557 l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      +.+++.+|++.||.+||++.||++.|+
T Consensus       269 l~~li~~cl~~~p~~Rpt~~el~~~L~  295 (296)
T cd05051         269 IYELMLECWRRDEEDRPTFREIHLFLQ  295 (296)
T ss_pred             HHHHHHHHhccChhcCCCHHHHHHHhc
Confidence            899999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.97  E-value=9.3e-30  Score=258.58  Aligned_cols=213  Identities=25%  Similarity=0.406  Sum_probs=164.0

Q ss_pred             ceEEEEEEC--------CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATID--------GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~~--------g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      +.||+|...        ++.+|||.+.        ..+.+|++++++++|+||+++++++... +..++||||+++|+|.
T Consensus         9 g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~~v~e~~~~~~L~   87 (269)
T cd05044           9 GEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLN-EPQYIIMELMEGGDLL   87 (269)
T ss_pred             eeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCC-CCeEEEEeccCCCcHH
Confidence            479998862        2678999774        2467899999999999999999998754 4789999999999999


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC-----cEEEeecCCCCCC
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF-----KAKIANFSLAAPA  481 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-----~~kl~DFGla~~~  481 (615)
                      +++........   ....++|.+++.++.|++.||.|||+.+   ++|+||||+||+++.+.     .+|++|||+++..
T Consensus        88 ~~l~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~  161 (269)
T cd05044          88 SYLRDARVERF---GPPLLTLKELLDICLDVAKGCVYLEQMH---FIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDI  161 (269)
T ss_pred             HHHHHhhhccc---CCccccHHHHHHHHHHHHHHHHHHHhCC---cccCCCChheEEEecCCCCCCcceEECCccccccc
Confidence            99975432110   0124899999999999999999999987   99999999999999877     8999999997532


Q ss_pred             C-------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHH
Q 047629          482 T-------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREE  535 (615)
Q Consensus       482 ~-------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~  535 (615)
                      .                         ...+.++|||||||++|||++ |+.|+......+   ....             
T Consensus       162 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~~~---~~~~-------------  225 (269)
T cd05044         162 YKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQE---VLQH-------------  225 (269)
T ss_pred             ccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCHHH---HHHH-------------
Confidence            1                         124568999999999999998 999986433211   1100             


Q ss_pred             HHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          536 RLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       536 ~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                           ++....-..+...+..+.+++.+||+.+|.+||+++++.+.|+
T Consensus       226 -----~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~  268 (269)
T cd05044         226 -----VTAGGRLQKPENCPDKIYQLMTNCWAQDPSERPTFDRIQEILQ  268 (269)
T ss_pred             -----HhcCCccCCcccchHHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence                 0000011122334556889999999999999999999999886

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.97  E-value=1e-29  Score=270.68  Aligned_cols=156  Identities=24%  Similarity=0.343  Sum_probs=135.9

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||||.+++          .+.+|+.++.+++|+||+++++.+.+. ...++||||+++|+|.+++.
T Consensus        15 g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~-~~~~lv~E~~~gg~L~~~l~   93 (363)
T cd05628          15 GEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDK-LNLYLIMEFLPGGDMMTLLM   93 (363)
T ss_pred             EEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecC-CeEEEEEcCCCCCcHHHHHH
Confidence            58999987  689999999863          356799999999999999999988754 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ...          .+++.+...++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...        
T Consensus        94 ~~~----------~l~~~~~~~~~~qi~~aL~~lH~~g---ivHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~~~  160 (363)
T cd05628          94 KKD----------TLTEEETQFYIAETVLAIDSIHQLG---FIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFY  160 (363)
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---eEecCCCHHHeEECCCCCEEEeeccCccccccccccccc
Confidence            643          3899999999999999999999998   9999999999999999999999999975321        


Q ss_pred             --------------------------------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCC
Q 047629          483 --------------------------------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTE  512 (615)
Q Consensus       483 --------------------------------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~  512 (615)
                                                                        ..++.++|||||||++|||++|+.||....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~~  240 (363)
T cd05628         161 RNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSET  240 (363)
T ss_pred             ccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCCCC
Confidence                                                              124568999999999999999999997543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.97  E-value=9.6e-30  Score=261.99  Aligned_cols=231  Identities=26%  Similarity=0.384  Sum_probs=174.8

Q ss_pred             eeHHHHHHHccccccccccc----ceEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhc-CCCCcccEEEEEEcC
Q 047629          323 YEIEVIMESTMNLSEHYSIG----KSVYRATI--DGKVLAVKKIK------EDVTEELRILQRI-NHANLVKLMGVSSDS  389 (615)
Q Consensus       323 ~~~~~l~~at~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~  389 (615)
                      +..+++..++++|.....+|    +.||++..  +|+.+|+|.+.      ..+.+|+.++.++ +|+|++++++++...
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~   91 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVKFYGMFYKA   91 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHHHhcCCCCeEEEEEEEEec
Confidence            34455555667776666666    48999987  68999999885      3466899999999 899999999998643


Q ss_pred             C----CcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeC
Q 047629          390 Q----GNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD  465 (615)
Q Consensus       390 ~----~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld  465 (615)
                      +    +..++|+||+++|+|.++++......      ..++|..+..++.|++.||+|||+++   ++||||||+||+++
T Consensus        92 ~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~------~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dlkp~nili~  162 (291)
T cd06639          92 DKLVGGQLWLVLELCNGGSVTELVKGLLICG------QRLDEAMISYILYGALLGLQHLHNNR---IIHRDVKGNNILLT  162 (291)
T ss_pred             cccCCCeeEEEEEECCCCcHHHHHHHhhhcC------CCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHEEEc
Confidence            3    35899999999999999986432111      13899999999999999999999987   99999999999999


Q ss_pred             CCCcEEEeecCCCCCCCC----------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhH
Q 047629          466 SRFKAKIANFSLAAPATN----------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTA  517 (615)
Q Consensus       466 ~~~~~kl~DFGla~~~~~----------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~  517 (615)
                      .++.+||+|||+++....                            ..+.++|||||||++|||++|+.|+.........
T Consensus       163 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~~~~  242 (291)
T cd06639         163 TEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPVKTL  242 (291)
T ss_pred             CCCCEEEeecccchhcccccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcHHHHH
Confidence            999999999998753210                            1356899999999999999999998754321110


Q ss_pred             HHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          518 VLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       518 ~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                            .           .+.....+.+  ..+.+....+.+++.+||+.+|++||++.|++++
T Consensus       243 ------~-----------~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~~  287 (291)
T cd06639         243 ------F-----------KIPRNPPPTL--LHPEKWCRSFNHFISQCLIKDFEARPSVTHLLEH  287 (291)
T ss_pred             ------H-----------HHhcCCCCCC--CcccccCHHHHHHHHHHhhcChhhCcCHHHHhcC
Confidence                  0           0111111111  1122333468999999999999999999999864

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=6e-30  Score=272.47  Aligned_cols=206  Identities=22%  Similarity=0.314  Sum_probs=160.0

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||||+++.          .+.+|+++|..++|+||+++++++.+. ...++||||+++|+|.+++.
T Consensus        15 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~-~~~~lv~E~~~~g~L~~~l~   93 (364)
T cd05599          15 GEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDE-NYLYLIMEYLPGGDMMTLLM   93 (364)
T ss_pred             EEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcC-CeEEEEECCCCCcHHHHHHH
Confidence            48999987  689999999863          246799999999999999999998754 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ...          .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...        
T Consensus        94 ~~~----------~l~~~~~~~~~~qi~~aL~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~  160 (364)
T cd05599          94 KKD----------TFTEEETRFYIAETILAIDSIHKLG---YIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFY  160 (364)
T ss_pred             HcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeEECCCCCEEEeecccceecccccccccc
Confidence            643          2899999999999999999999998   9999999999999999999999999875321        


Q ss_pred             -----------------------------------------------------CCCCCcccchhHHHHHHHHHcCCCCCC
Q 047629          483 -----------------------------------------------------NDVMPKFDVFAFGVVLLELLSGKKATR  509 (615)
Q Consensus       483 -----------------------------------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~  509 (615)
                                                                           ..++.++|||||||++|||++|+.||.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~  240 (364)
T cd05599         161 RILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFC  240 (364)
T ss_pred             ccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCC
Confidence                                                                 124568999999999999999999997


Q ss_pred             CCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCC---HHHHHHH
Q 047629          510 TTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPN---MAEVVFN  581 (615)
Q Consensus       510 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPs---m~ev~~~  581 (615)
                      .....+.      ...           +..+. ..+...........+.+++.+|+. +|.+|++   ++|++.+
T Consensus       241 ~~~~~~~------~~~-----------i~~~~-~~~~~~~~~~~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~h  296 (364)
T cd05599         241 SDNPQET------YRK-----------IINWK-ETLQFPDEVPLSPEAKDLIKRLCC-EAERRLGNNGVNEIKSH  296 (364)
T ss_pred             CCCHHHH------HHH-----------HHcCC-CccCCCCCCCCCHHHHHHHHHHcc-CHhhcCCCCCHHHHhcC
Confidence            5432110      010           11110 011000011123356788888886 8999998   8888774

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.97  E-value=1.2e-29  Score=258.17  Aligned_cols=210  Identities=27%  Similarity=0.391  Sum_probs=166.4

Q ss_pred             ceEEEEEEC-----CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATID-----GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~~-----g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|...     ...||||...        +.+.+|+.++++++|+||+++++++.+  ...++||||+++|+|.+++
T Consensus        20 g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~--~~~~lv~e~~~~~~L~~~l   97 (270)
T cd05056          20 GDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE--NPVWIVMELAPLGELRSYL   97 (270)
T ss_pred             eeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC--CCcEEEEEcCCCCcHHHHH
Confidence            589999872     2468999875        247789999999999999999998864  3678999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      .....         .+++.++..++.|++.||+|||+.+   ++||||||+||+++.++.+|++|||+++...       
T Consensus        98 ~~~~~---------~~~~~~~~~~~~~l~~~l~~lH~~~---~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~  165 (270)
T cd05056          98 QVNKY---------SLDLASLILYSYQLSTALAYLESKR---FVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKA  165 (270)
T ss_pred             HhCCC---------CCCHHHHHHHHHHHHHHHHHHHhCC---eeccccChheEEEecCCCeEEccCceeeecccccceec
Confidence            76432         3899999999999999999999988   9999999999999999999999999875321       


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCc
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPN  544 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~  544 (615)
                                       ...+.++||||||+++||+++ |+.||......+..   .              .+.....+ 
T Consensus       166 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~---~--------------~~~~~~~~-  227 (270)
T cd05056         166 SKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVI---G--------------RIENGERL-  227 (270)
T ss_pred             CCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHHHH---H--------------HHHcCCcC-
Confidence                             123567999999999999986 99998754421110   0              01100011 


Q ss_pred             CCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhccc
Q 047629          545 LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       545 l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~  587 (615)
                         ..+......+.+++.+|+..+|.+||++.|++..|..+..
T Consensus       228 ---~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~~  267 (270)
T cd05056         228 ---PMPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDILQ  267 (270)
T ss_pred             ---CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence               1123344568999999999999999999999999988754

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.97  E-value=1.1e-29  Score=266.30  Aligned_cols=202  Identities=26%  Similarity=0.358  Sum_probs=156.9

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHH---HhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRIL---QRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l---~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||++..  +|+.||||.++..          +.+|+.++   ++++|+||+++++++... +..++||||+++|+|..
T Consensus        13 g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~-~~~~lv~E~~~~~~L~~   91 (324)
T cd05589          13 GKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTE-DHVCFVMEYAAGGDLMM   91 (324)
T ss_pred             EEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcC-CEEEEEEcCCCCCcHHH
Confidence            58999987  6899999998632          34455544   566899999999998754 47999999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      +++..           .+++.++..++.|++.||+|||+++   ++||||||+|||++.++.+||+|||+++...     
T Consensus        92 ~~~~~-----------~l~~~~~~~~~~qi~~al~~lH~~~---ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~  157 (324)
T cd05589          92 HIHTD-----------VFSEPRAVFYAACVVLGLQYLHENK---IVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGDR  157 (324)
T ss_pred             HhhcC-----------CCCHHHHHHHHHHHHHHHHHHHhCC---eEecCCCHHHeEECCCCcEEeCcccCCccCCCCCCc
Confidence            88642           2899999999999999999999998   9999999999999999999999999875321     


Q ss_pred             ------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCc
Q 047629          483 ------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPN  544 (615)
Q Consensus       483 ------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~  544 (615)
                                        ..++.++|||||||++|||++|+.||......+   ..   .           .+.. ..+ 
T Consensus       158 ~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~~~---~~---~-----------~i~~-~~~-  218 (324)
T cd05589         158 TSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEE---VF---D-----------SIVN-DEV-  218 (324)
T ss_pred             ccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCHHH---HH---H-----------HHHh-CCC-
Confidence                              124568999999999999999999997543211   00   0           0000 011 


Q ss_pred             CCCCCChHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHHH
Q 047629          545 LESFYPIDGALSLATLARACTMDKSLSRP-----NMAEVVFN  581 (615)
Q Consensus       545 l~~~~~~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~~  581 (615)
                         .++......+.+++.+|++.||.+||     ++.++++.
T Consensus       219 ---~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~~  257 (324)
T cd05589         219 ---RYPRFLSREAISIMRRLLRRNPERRLGSGEKDAEDVKKQ  257 (324)
T ss_pred             ---CCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhhC
Confidence               12333445678999999999999999     46666653

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=1.2e-29  Score=272.66  Aligned_cols=224  Identities=19%  Similarity=0.247  Sum_probs=162.5

Q ss_pred             ceEEEEEE--CCeEEEEEEccH-HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE-DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSS  419 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~-~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~  419 (615)
                      |.||++..  +++.||+|.... .+.+|+++|++++||||+++++++... ...++|+|++. ++|.+++....      
T Consensus       106 g~V~~~~d~~~~~~vaiK~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~-~~~~lv~e~~~-~~L~~~l~~~~------  177 (391)
T PHA03212        106 GFAFACIDNKTCEHVVIKAGQRGGTATEAHILRAINHPSIIQLKGTFTYN-KFTCLILPRYK-TDLYCYLAAKR------  177 (391)
T ss_pred             eEEEEEEECCCCCEEEEechhhhhhHHHHHHHHhCCCCCCCCEeEEEEEC-CeeEEEEecCC-CCHHHHHHhcC------
Confidence            58999987  689999998763 578899999999999999999988754 47899999995 78999886543      


Q ss_pred             CcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------------
Q 047629          420 GSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------------  482 (615)
Q Consensus       420 ~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------------  482 (615)
                          .+++..++.++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...                 
T Consensus       178 ----~l~~~~~~~i~~qi~~aL~ylH~~~---IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~  250 (391)
T PHA03212        178 ----NIAICDILAIERSVLRAIQYLHENR---IIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKYYGWAGTIATN  250 (391)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChHhEEEcCCCCEEEEeCCcccccccccccccccccCccCCC
Confidence                2889999999999999999999998   9999999999999999999999999985321                 


Q ss_pred             -------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCC----hhHHHHHHHHHHHhH---------HHHHHHHH---hh
Q 047629          483 -------NDVMPKFDVFAFGVVLLELLSGKKATRTTENG----KTAVLWKEIREVLKV---------EEKREERL---RN  539 (615)
Q Consensus       483 -------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~----~~~~l~~~~~~~~~~---------~~~~~~~~---~~  539 (615)
                             ..++.++|||||||++|||++|+.|+......    ........+......         ........   ..
T Consensus       251 aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~  330 (391)
T PHA03212        251 APELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYIGLAK  330 (391)
T ss_pred             ChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHHHHHh
Confidence                   12456899999999999999999887543211    000011111110000         00000000   00


Q ss_pred             --hcCCcCCCCC--ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          540 --WMDPNLESFY--PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       540 --~~dp~l~~~~--~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                        ...+......  ..+....+.+|+.+|++.||++|||++|+++.
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~h  376 (391)
T PHA03212        331 KSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLDF  376 (391)
T ss_pred             ccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhcC
Confidence              0011100000  01234568899999999999999999999874

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.97  E-value=3.4e-29  Score=255.03  Aligned_cols=214  Identities=21%  Similarity=0.337  Sum_probs=159.7

Q ss_pred             ceEEEEEE-CC---eEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI-DG---KVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~-~g---~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||+|.. ++   ..+++|.++        +.+.+|+.+++.++||||+++++.|.+. ...++||||+++|+|.+++.
T Consensus         9 g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~   87 (268)
T cd05086           9 GKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEA-IPYLLVFEYCELGDLKSYLS   87 (268)
T ss_pred             ceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCC-CccEEEEecCCCCcHHHHHH
Confidence            47999875 32   346677654        3577899999999999999999998754 47899999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ......      ..+++..+..++.|++.||+|||+.+   ++||||||+|||++.++.+||+|||++....        
T Consensus        88 ~~~~~~------~~~~~~~~~~~~~~i~~al~~lH~~~---i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~  158 (268)
T cd05086          88 QEQWHR------RNSQLLLLQRMACEIAAGVTHMHKHN---FLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETE  158 (268)
T ss_pred             hhhccc------ccccHHHHHHHHHHHHHHHHHHHHCC---eeccCCccceEEEcCCccEEecccccccccCcchhhhcc
Confidence            643211      13677888899999999999999987   9999999999999999999999999874210        


Q ss_pred             ------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHH
Q 047629          483 ------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERL  537 (615)
Q Consensus       483 ------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  537 (615)
                                              ...+.++|||||||++|||++ |+.|+....+.+   .   +...+      .+..
T Consensus       159 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~---~---~~~~~------~~~~  226 (268)
T cd05086         159 DDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSDRE---V---LNHVI------KDQQ  226 (268)
T ss_pred             cCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCHHH---H---HHHHH------hhcc
Confidence                                    012457999999999999997 466775433211   1   11111      1112


Q ss_pred             hhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          538 RNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       538 ~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      ....+|.+...+.    ..+.+++..|| .+|++||+++||++.|.
T Consensus       227 ~~~~~~~~~~~~~----~~~~~l~~~c~-~~P~~Rp~~~~i~~~l~  267 (268)
T cd05086         227 VKLFKPQLELPYS----ERWYEVLQFCW-LSPEKRATAEEVHRLLT  267 (268)
T ss_pred             cccCCCccCCCCc----HHHHHHHHHHh-hCcccCCCHHHHHHHhc
Confidence            2334455443333    34678889999 67999999999998874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.97  E-value=1.6e-29  Score=261.57  Aligned_cols=205  Identities=20%  Similarity=0.330  Sum_probs=163.4

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      +.||+|..  +|+.+|+|.+.       ..+.+|+.++++++|+|++++++.+... ...++||||+++|+|.+++... 
T Consensus        34 ~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~~-  111 (296)
T cd06654          34 GTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVG-DELWVVMEYLAGGSLTDVVTET-  111 (296)
T ss_pred             eEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeC-CEEEEeecccCCCCHHHHHHhc-
Confidence            58999986  68899999885       3467899999999999999999988754 4799999999999999998642 


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                                .+++.++..++.|++.||+|||+.+   ++||||||+||+++.++.+||+|||++....           
T Consensus       112 ----------~~~~~~~~~i~~ql~~aL~~LH~~g---i~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  178 (296)
T cd06654         112 ----------CMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVG  178 (296)
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEcCCCCEEECccccchhccccccccCcccC
Confidence                      2789999999999999999999998   9999999999999999999999999875321           


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  ...+.++|||||||++|||++|+.||..........      .             ...++......+
T Consensus       179 ~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~~~~------~-------------~~~~~~~~~~~~  239 (296)
T cd06654         179 TPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALY------L-------------IATNGTPELQNP  239 (296)
T ss_pred             CccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHHhHH------H-------------HhcCCCCCCCCc
Confidence                        113568999999999999999999996543211100      0             000110001122


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ......+.+++.+||..||++||++.|++..
T Consensus       240 ~~~~~~l~~li~~~l~~~p~~Rpt~~eil~~  270 (296)
T cd06654         240 EKLSAIFRDFLNRCLDMDVEKRGSAKELLQH  270 (296)
T ss_pred             cccCHHHHHHHHHHCcCCcccCcCHHHHhhC
Confidence            2334567899999999999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.97  E-value=1.4e-29  Score=265.67  Aligned_cols=224  Identities=17%  Similarity=0.245  Sum_probs=162.5

Q ss_pred             eEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          344 SVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       344 ~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      .||++..  +|+.||+|+++.         .+.+|+++++.++||||+++++++... +..++|+||+++|+|.+++...
T Consensus        15 ~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~-~~~~lv~e~~~~~~l~~~~~~~   93 (327)
T cd08227          15 TVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIAD-NELWVVTSFMAYGSAKDLICTH   93 (327)
T ss_pred             EEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEEC-CEEEEEEeccCCCcHHHHHHhh
Confidence            6888887  789999999863         255799999999999999999998764 4799999999999999999654


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC-----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA-----------  481 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~-----------  481 (615)
                      ...        .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.++++|||.....           
T Consensus        94 ~~~--------~l~~~~~~~i~~qi~~~L~~LH~~~---iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  162 (327)
T cd08227          94 FMD--------GMSELAIAYILQGVLKALDYIHHMG---YVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRLRVVH  162 (327)
T ss_pred             ccC--------CCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCChhhEEEecCCcEEEcccchhhccccccccccccc
Confidence            321        3899999999999999999999998   999999999999999999999999753110           


Q ss_pred             -------------------C--CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHH----hHHHHHHHH
Q 047629          482 -------------------T--NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVL----KVEEKREER  536 (615)
Q Consensus       482 -------------------~--~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~  536 (615)
                                         .  ..++.++|||||||++|||++|+.||........  .........    .......+.
T Consensus       163 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  240 (327)
T cd08227         163 DFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQM--LLEKLNGTVPCLLDTTTIPAEE  240 (327)
T ss_pred             cccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcchhHH--HHHHhcCCccccccccchhhhh
Confidence                               0  1245789999999999999999999975432111  111000000    000000000


Q ss_pred             Hh-----hhcCCcC-----------------CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          537 LR-----NWMDPNL-----------------ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       537 ~~-----~~~dp~l-----------------~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +.     ...+...                 ...+.......+.+++.+||+.||++|||++|+++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~~  307 (327)
T cd08227         241 LTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLNH  307 (327)
T ss_pred             cccCCcccCCcCCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhcC
Confidence            00     0000000                 001112233468899999999999999999999875

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.97  E-value=1.4e-29  Score=261.48  Aligned_cols=212  Identities=23%  Similarity=0.411  Sum_probs=156.1

Q ss_pred             EEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCC--CCCccc
Q 047629          354 VLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSS--SSGSVI  423 (615)
Q Consensus       354 ~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~--~~~~~~  423 (615)
                      .||+|.++.        .+.+|++++++++|+|++++++++... ...++||||+++|+|.+++........  ......
T Consensus        46 ~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~  124 (295)
T cd05097          46 LVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLGVCVSD-DPLCMITEYMENGDLNQFLSQREIESTFTHANNIP  124 (295)
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CccEEEEecCCCCcHHHHHHhccccccccccccCC
Confidence            589998752        477899999999999999999998754 478999999999999999965321100  000112


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------------------
Q 047629          424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------------------  482 (615)
Q Consensus       424 ~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------------------  482 (615)
                      .++|.+++.++.|++.||.|||+++   ++||||||+||++++++.+||+|||+++...                     
T Consensus       125 ~~~~~~~~~i~~~i~~al~~lH~~~---i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  201 (295)
T cd05097         125 SVSIANLLYMAVQIASGMKYLASLN---FVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWE  201 (295)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhcC---eeccccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChh
Confidence            3789999999999999999999998   9999999999999999999999999985321                     


Q ss_pred             ----CCCCCcccchhHHHHHHHHHc--CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHH
Q 047629          483 ----NDVMPKFDVFAFGVVLLELLS--GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALS  556 (615)
Q Consensus       483 ----~~~~~k~DV~SfGvvl~Ellt--G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~  556 (615)
                          ..++.++|||||||++|||++  |..|+......+..   .......          . ..+.......+...+..
T Consensus       202 ~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~~~~---~~~~~~~----------~-~~~~~~~~~~~~~~~~~  267 (295)
T cd05097         202 SILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQVI---ENTGEFF----------R-NQGRQIYLSQTPLCPSP  267 (295)
T ss_pred             hhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccChHHHH---HHHHHhh----------h-hccccccCCCCCCCCHH
Confidence                123568999999999999998  45566543321111   0011000          0 00000001112223457


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          557 LATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       557 l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      +.+++.+||+.||++||+|.+|++.|.
T Consensus       268 l~~li~~~l~~~p~~RPs~~~i~~~l~  294 (295)
T cd05097         268 VFKLMMRCWSRDIKDRPTFNKIHHFLR  294 (295)
T ss_pred             HHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence            899999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.97  E-value=5.8e-30  Score=282.93  Aligned_cols=209  Identities=22%  Similarity=0.272  Sum_probs=162.8

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCCC-------cEEEEEeecCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQG-------NRFLVYEYAENGS  404 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~-------~~~lV~E~~~~Gs  404 (615)
                      |.||++..  +|+.||||.++.         .+.+|+.++..++|+|++++.+.+...+.       ..++||||+++|+
T Consensus        46 G~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~~~~~i~lV~Ey~~~gs  125 (496)
T PTZ00283         46 GTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPENVLMIALVLDYANAGD  125 (496)
T ss_pred             EEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCcccceEEEEEEeCCCCCc
Confidence            58999986  789999998842         36679999999999999998876543221       2579999999999


Q ss_pred             HHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--
Q 047629          405 LDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--  482 (615)
Q Consensus       405 L~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--  482 (615)
                      |.++++......      ..+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...  
T Consensus       126 L~~~l~~~~~~~------~~l~e~~~~~i~~qll~aL~~lH~~~---IiHrDLKP~NILl~~~~~vkL~DFGls~~~~~~  196 (496)
T PTZ00283        126 LRQEIKSRAKTN------RTFREHEAGLLFIQVLLAVHHVHSKH---MIHRDIKSANILLCSNGLVKLGDFGFSKMYAAT  196 (496)
T ss_pred             HHHHHHHhhccC------CCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEeCCCCEEEEecccCeecccc
Confidence            999997543211      24889999999999999999999987   9999999999999999999999999986421  


Q ss_pred             -----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhh
Q 047629          483 -----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRN  539 (615)
Q Consensus       483 -----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  539 (615)
                                             ..++.++|||||||++|||++|+.||......   ..   +..          .+..
T Consensus       197 ~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~~---~~---~~~----------~~~~  260 (496)
T PTZ00283        197 VSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENME---EV---MHK----------TLAG  260 (496)
T ss_pred             ccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHH---HH---HHH----------HhcC
Confidence                                   12456899999999999999999999653310   00   110          1111


Q ss_pred             hcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          540 WMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       540 ~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..+     ..+......+.+++..||+.||.+||++.+++.+
T Consensus       261 ~~~-----~~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~~  297 (496)
T PTZ00283        261 RYD-----PLPPSISPEMQEIVTALLSSDPKRRPSSSKLLNM  297 (496)
T ss_pred             CCC-----CCCCCCCHHHHHHHHHHcccChhhCcCHHHHHhC
Confidence            111     1233344568999999999999999999999864

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.97  E-value=3.7e-30  Score=270.31  Aligned_cols=207  Identities=20%  Similarity=0.262  Sum_probs=161.5

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||++..  +|+.||+|+++.          .+.+|+.+++.++|+||+++.+++.+. ...++||||+++|+|.+++.
T Consensus        15 g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~   93 (330)
T cd05601          15 GEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDK-DNLYLVMEYQPGGDLLSLLN   93 (330)
T ss_pred             EEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecC-CeEEEEECCCCCCCHHHHHH
Confidence            48999887  689999999863          256799999999999999999988754 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ....         .+++..+..++.|++.||+|||+.+   |+||||||+|||++.++.+||+|||+++...        
T Consensus        94 ~~~~---------~l~~~~~~~~~~qi~~aL~~lH~~~---i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~  161 (330)
T cd05601          94 RYED---------QFDEDMAQFYLAELVLAIHSVHQMG---YVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNSK  161 (330)
T ss_pred             HhcC---------CCCHHHHHHHHHHHHHHHHHHHHCC---eEcccCchHheEECCCCCEEeccCCCCeECCCCCceeee
Confidence            6532         3899999999999999999999998   9999999999999999999999999985321        


Q ss_pred             ----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhh
Q 047629          483 ----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNW  540 (615)
Q Consensus       483 ----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  540 (615)
                                            ..++.++|||||||++|||++|+.||.......      .+.....        ....
T Consensus       162 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~------~~~~i~~--------~~~~  227 (330)
T cd05601         162 LPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAK------TYNNIMN--------FQRF  227 (330)
T ss_pred             cccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCHHH------HHHHHHc--------CCCc
Confidence                                  113467999999999999999999997543211      0111100        0000


Q ss_pred             cCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          541 MDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       541 ~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..  ..  ........+.+|+..|++ +|.+||++.+++..
T Consensus       228 ~~--~~--~~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~h  263 (330)
T cd05601         228 LK--FP--EDPKVSSDFLDLIQSLLC-GQKERLGYEGLCCH  263 (330)
T ss_pred             cC--CC--CCCCCCHHHHHHHHHHcc-ChhhCCCHHHHhCC
Confidence            00  00  011233457889999997 99999999999864

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.97  E-value=8.5e-30  Score=266.64  Aligned_cols=203  Identities=23%  Similarity=0.366  Sum_probs=159.5

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||++..  +|+.||||.++.+          +..|..++..+ +|+||+++++++... +..++||||+++|+|.+++
T Consensus         9 g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~-~~~~iv~Ey~~~g~L~~~i   87 (320)
T cd05590           9 GKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTP-DRLFFVMEFVNGGDLMFHI   87 (320)
T ss_pred             eEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcC-CEEEEEEcCCCCchHHHHH
Confidence            58999987  6889999998642          34688888876 799999999988754 4799999999999999998


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      ....          .+++..+..++.|++.||+|||+++   ++||||||+|||++.++.+||+|||+++...       
T Consensus        88 ~~~~----------~l~~~~~~~~~~ql~~~L~~lH~~~---ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~~~  154 (320)
T cd05590          88 QKSR----------RFDEARARFYAAEITSALMFLHDKG---IIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTS  154 (320)
T ss_pred             HHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCccc
Confidence            7654          2889999999999999999999998   9999999999999999999999999876421       


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                      ..++.++|||||||++|||++|+.||......+   ...   .              +....  
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~---~~~---~--------------i~~~~--  212 (320)
T cd05590         155 TFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDD---LFE---A--------------ILNDE--  212 (320)
T ss_pred             ccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHH---HHH---H--------------HhcCC--
Confidence                            123568999999999999999999997543211   110   0              00000  


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCH------HHHHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNM------AEVVFN  581 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm------~ev~~~  581 (615)
                      ..++......+.+++.+|++.||++||++      ++++++
T Consensus       213 ~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~~~~h  253 (320)
T cd05590         213 VVYPTWLSQDAVDILKAFMTKNPTMRLGSLTLGGEEAILRH  253 (320)
T ss_pred             CCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCCCHHHHHcC
Confidence            01222234457899999999999999998      555543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.97  E-value=2.2e-29  Score=253.55  Aligned_cols=215  Identities=28%  Similarity=0.448  Sum_probs=167.9

Q ss_pred             ceEEEEEEC-----CeEEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATID-----GKVLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~~-----g~~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      +.||++...     +..+|+|.++.        .+.+|++.+.+++|+|++++++++.+ +...++||||+++|+|.+++
T Consensus         9 g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l   87 (262)
T cd00192           9 GEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTE-EEPLYLVLEYMEGGDLLDYL   87 (262)
T ss_pred             eEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecC-CCceEEEEEeccCCcHHHHH
Confidence            589999984     78999998862        46679999999999999999999876 45799999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------  483 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------  483 (615)
                      ....... .......+++.++..++.|++.||+|||+++   ++||||||+||+++.++.+||+|||.+.....      
T Consensus        88 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~---i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~  163 (262)
T cd00192          88 RKSRPVF-PSPEKSTLSLKDLLSFAIQIAKGMEYLASKK---FVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRK  163 (262)
T ss_pred             hhccccc-cccccccCCHHHHHHHHHHHHHHHHHHHcCC---cccCccCcceEEECCCCcEEEccccccccccccccccc
Confidence            8752110 0000014899999999999999999999987   99999999999999999999999999865422      


Q ss_pred             -------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCC
Q 047629          484 -------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDP  543 (615)
Q Consensus       484 -------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp  543 (615)
                                         ..+.++||||+|++++||++ |+.|+......   ..+.              .+..... 
T Consensus       164 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~---~~~~--------------~~~~~~~-  225 (262)
T cd00192         164 KTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNE---EVLE--------------YLRKGYR-  225 (262)
T ss_pred             ccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCHH---HHHH--------------HHHcCCC-
Confidence                               13457999999999999999 68888765321   1110              1111111 


Q ss_pred             cCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          544 NLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       544 ~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                         ...+......+.+++.+||+.+|.+|||+.|++..|+
T Consensus       226 ---~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~  262 (262)
T cd00192         226 ---LPKPEYCPDELYELMLSCWQLDPEDRPTFSELVERLE  262 (262)
T ss_pred             ---CCCCccCChHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence               1223334567899999999999999999999998873

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.97  E-value=2.5e-29  Score=257.08  Aligned_cols=204  Identities=22%  Similarity=0.337  Sum_probs=165.3

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      +.||+|..  +++.||+|.++        ..+.+|++++++++|+||+++++++.+. ...++||||+++|+|.+++...
T Consensus        18 ~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~i~~~   96 (277)
T cd06640          18 GEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKG-TKLWIIMEYLGGGSALDLLRAG   96 (277)
T ss_pred             eEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC-CEEEEEEecCCCCcHHHHHhcC
Confidence            58999987  58899999875        2467899999999999999999998764 4799999999999999998643


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                                 .+++.+...++.|++.||+|||+.+   ++|+||+|+||+++.++.++++|||++....          
T Consensus        97 -----------~l~~~~~~~~~~~l~~~l~~lh~~~---ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~  162 (277)
T cd06640          97 -----------PFDEFQIATMLKEILKGLDYLHSEK---KIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFV  162 (277)
T ss_pred             -----------CCCHHHHHHHHHHHHHHHHHHHhCC---ccCcCCChhhEEEcCCCCEEEcccccceeccCCcccccccc
Confidence                       2788899999999999999999987   9999999999999999999999999984431          


Q ss_pred             -------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          483 -------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       483 -------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                   ...+.++|||||||++|||++|+.|+.........                     ..+........
T Consensus       163 ~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~---------------------~~~~~~~~~~~  221 (277)
T cd06640         163 GTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVL---------------------FLIPKNNPPTL  221 (277)
T ss_pred             CcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChHhHh---------------------hhhhcCCCCCC
Confidence                         12356899999999999999999998654321100                     00111111223


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      +......+.+++.+||+.+|++||++.|++..-
T Consensus       222 ~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~  254 (277)
T cd06640         222 TGEFSKPFKEFIDACLNKDPSFRPTAKELLKHK  254 (277)
T ss_pred             chhhhHHHHHHHHHHcccCcccCcCHHHHHhCh
Confidence            445566789999999999999999999998863

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.97  E-value=5.3e-30  Score=257.35  Aligned_cols=225  Identities=22%  Similarity=0.309  Sum_probs=167.9

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCC-cccEEEEEEcCCC-----cEEEEEeecCCCCH
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHAN-LVKLMGVSSDSQG-----NRFLVYEYAENGSL  405 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~n-iv~l~g~~~~~~~-----~~~lV~E~~~~GsL  405 (615)
                      +.||+|+.  +|+.||+|+++-         ...+|+.+|++++|+| ||+|.+++...+.     .+++|+||+.. +|
T Consensus        25 g~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~l~lvfe~~d~-DL  103 (323)
T KOG0594|consen   25 GVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGKLYLVFEFLDR-DL  103 (323)
T ss_pred             eEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccceEEEEEEeecc-cH
Confidence            58999997  799999999873         2468999999999999 9999999876542     68899999976 99


Q ss_pred             HHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---
Q 047629          406 DKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---  482 (615)
Q Consensus       406 ~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---  482 (615)
                      .+++.......      ..++-..+..++.|++.||+|||+++   |+||||||.|||+++++.+||+|||+|+...   
T Consensus       104 ~~ymd~~~~~~------~g~~~~~ik~~m~Qll~gl~~~H~~~---IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~ip~  174 (323)
T KOG0594|consen  104 KKYMDSLPKKP------QGLPPRLIKSFMRQLLRGLAFLHSHG---ILHRDLKPQNLLISSSGVLKLADFGLARAFSIPM  174 (323)
T ss_pred             HHHHHhccccc------cCCCHHHHHHHHHHHHHHHHHHHhCC---eecccCCcceEEECCCCcEeeeccchHHHhcCCc
Confidence            99998765321      13666889999999999999999998   9999999999999999999999999997542   


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHH--HHHHHHhh
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE--KREERLRN  539 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~  539 (615)
                                           ..+++..||||+||++.||++++.-|....+.+   ....+.+.+....  ..+ .+..
T Consensus       175 ~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~---ql~~If~~lGtP~e~~Wp-~v~~  250 (323)
T KOG0594|consen  175 RTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEID---QLFRIFRLLGTPNEKDWP-GVSS  250 (323)
T ss_pred             ccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHH---HHHHHHHHcCCCCccCCC-Cccc
Confidence                                 125678999999999999999998887655422   1222333322110  000 0000


Q ss_pred             hcCCc--CCC-----CCChHHH---HHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          540 WMDPN--LES-----FYPIDGA---LSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       540 ~~dp~--l~~-----~~~~~~~---~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..|-.  ...     .+.....   ....+++..|++.+|.+|.|++..+.+
T Consensus       251 ~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h  302 (323)
T KOG0594|consen  251 LPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTH  302 (323)
T ss_pred             cccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhcC
Confidence            00100  000     0000011   257899999999999999999999886

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.97  E-value=2.2e-29  Score=253.52  Aligned_cols=207  Identities=25%  Similarity=0.434  Sum_probs=164.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-----HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-----EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-----~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      +.||+|..  +++.+++|.++     +++.+|++++++++|+||+++++++... ...++++||+++++|.+++..... 
T Consensus        17 ~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~-~~~~l~~e~~~~~~L~~~l~~~~~-   94 (256)
T cd06612          17 GSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCDSPYIVKYYGSYFKN-TDLWIVMEYCGAGSVSDIMKITNK-   94 (256)
T ss_pred             eEEEEEEEcCCCcEEEEEEeecHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecC-CcEEEEEecCCCCcHHHHHHhCcc-
Confidence            48999998  47899999886     3578899999999999999999998754 479999999999999999965432 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------------  483 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------------  483 (615)
                              .++|..+..++.|++.||.|||+.+   ++||||+|+||++++++.+||+|||++.....            
T Consensus        95 --------~l~~~~~~~~~~~l~~~l~~lh~~~---i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~  163 (256)
T cd06612          95 --------TLTEEEIAAILYQTLKGLEYLHSNK---KIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTP  163 (256)
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcceEEECCCCcEEEcccccchhcccCccccccccCCc
Confidence                    3899999999999999999999998   99999999999999999999999998764321            


Q ss_pred             -----------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChH
Q 047629          484 -----------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPID  552 (615)
Q Consensus       484 -----------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~  552 (615)
                                 ..+.++||||||+++|||++|+.|+..........                 .......+.+  ..+..
T Consensus       164 ~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~~~-----------------~~~~~~~~~~--~~~~~  224 (256)
T cd06612         164 FWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIF-----------------MIPNKPPPTL--SDPEK  224 (256)
T ss_pred             cccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhhhhh-----------------hhccCCCCCC--Cchhh
Confidence                       13468999999999999999999987543211100                 0000111111  11222


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          553 GALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       553 ~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ....+.+++.+||+.||++||++.||++.
T Consensus       225 ~~~~~~~~i~~~l~~~P~~Rps~~~il~~  253 (256)
T cd06612         225 WSPEFNDFVKKCLVKDPEERPSAIQLLQH  253 (256)
T ss_pred             cCHHHHHHHHHHHhcChhhCcCHHHHhcC
Confidence            33468899999999999999999999863

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.97  E-value=1.9e-29  Score=256.06  Aligned_cols=204  Identities=24%  Similarity=0.422  Sum_probs=163.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGS  404 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~Gs  404 (615)
                      +.||+|..  +++.+|+|.+.                +.+.+|++++++++|+||+++++++.+. +..++++||+++++
T Consensus        14 ~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~   92 (267)
T cd06628          14 GSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDA-DHLNIFLEYVPGGS   92 (267)
T ss_pred             eEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeC-CccEEEEEecCCCC
Confidence            48999986  67899999774                2367899999999999999999998754 47899999999999


Q ss_pred             HHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--
Q 047629          405 LDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--  482 (615)
Q Consensus       405 L~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--  482 (615)
                      |.+++....          .+++..+..++.|++.||+|||+.+   ++||||||+||++++++.+||+|||+++...  
T Consensus        93 L~~~l~~~~----------~l~~~~~~~~~~~l~~~l~~lH~~~---ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~~  159 (267)
T cd06628          93 VAALLNNYG----------AFEETLVRNFVRQILKGLNYLHNRG---IIHRDIKGANILVDNKGGIKISDFGISKKLEAN  159 (267)
T ss_pred             HHHHHHhcc----------CccHHHHHHHHHHHHHHHHHHHhcC---cccccCCHHHEEEcCCCCEEecccCCCcccccc
Confidence            999997643          2889999999999999999999988   9999999999999999999999999875432  


Q ss_pred             ---------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHH
Q 047629          483 ---------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREE  535 (615)
Q Consensus       483 ---------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~  535 (615)
                                                 ...+.++||||||+++|||++|+.|+.......      .+.           
T Consensus       160 ~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~------~~~-----------  222 (267)
T cd06628         160 SLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQ------AIF-----------  222 (267)
T ss_pred             cccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccHHH------HHH-----------
Confidence                                       013457999999999999999999997533210      010           


Q ss_pred             HHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          536 RLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       536 ~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+.....+.+    +......+.+++.+||+.||.+||++.||++.
T Consensus       223 ~~~~~~~~~~----~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  264 (267)
T cd06628         223 KIGENASPEI----PSNISSEAIDFLEKTFEIDHNKRPTAAELLKH  264 (267)
T ss_pred             HHhccCCCcC----CcccCHHHHHHHHHHccCCchhCcCHHHHhhC
Confidence            1111222333    23344567899999999999999999999863

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.97  E-value=1e-29  Score=267.07  Aligned_cols=210  Identities=18%  Similarity=0.311  Sum_probs=161.7

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||++..  +|+.||+|.++.+          +..|..++.++ +||||+++++++.+. ...++||||+++|+|.+++
T Consensus         9 g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~-~~~~lv~e~~~~g~L~~~~   87 (329)
T cd05588           9 AKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTE-SRLFFVIEFVSGGDLMFHM   87 (329)
T ss_pred             eEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcC-CEEEEEEeCCCCCCHHHHH
Confidence            58999987  6899999998742          45788899888 799999999988754 4799999999999999998


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC--------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA--------  481 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~--------  481 (615)
                      ....          .+++..+..++.|++.||+|||+++   ++||||||+|||++.++.+||+|||+++..        
T Consensus        88 ~~~~----------~l~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~  154 (329)
T cd05588          88 QRQR----------KLPEEHARFYSAEISLALNFLHERG---IIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTTS  154 (329)
T ss_pred             HHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHeEECCCCCEEECcCccccccccCCCccc
Confidence            6543          2899999999999999999999998   999999999999999999999999998631        


Q ss_pred             ---------------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCCh--hHHHHHHHHHHHhHHHHHHHHHhhhcCCc
Q 047629          482 ---------------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGK--TAVLWKEIREVLKVEEKREERLRNWMDPN  544 (615)
Q Consensus       482 ---------------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~dp~  544 (615)
                                     ...++.++|||||||++|||++|+.||......+  .....++....          +   ....
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~----------~---~~~~  221 (329)
T cd05588         155 TFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQV----------I---LEKQ  221 (329)
T ss_pred             cccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHH----------H---HcCC
Confidence                           0124568999999999999999999996422111  00000111110          1   1111


Q ss_pred             CCCCCChHHHHHHHHHHHHhhhcCCCCCCC------HHHHHHH
Q 047629          545 LESFYPIDGALSLATLARACTMDKSLSRPN------MAEVVFN  581 (615)
Q Consensus       545 l~~~~~~~~~~~l~~l~~~C~~~dP~~RPs------m~ev~~~  581 (615)
                      .  ..|......+.+++..|++.||.+||+      +.|++++
T Consensus       222 ~--~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~h  262 (329)
T cd05588         222 I--RIPRSLSVKASSVLKGFLNKDPKERLGCHPQTGFRDIKSH  262 (329)
T ss_pred             C--CCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHhcC
Confidence            1  123333456789999999999999997      6777654

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.97  E-value=1e-29  Score=265.71  Aligned_cols=203  Identities=24%  Similarity=0.365  Sum_probs=161.7

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||++..  +++.||||.++++          +..|.+++..+ +|+||+++++++... +..++||||+++|+|..++
T Consensus         9 g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~~   87 (318)
T cd05570           9 GKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTK-DRLFFVMEYVNGGDLMFHI   87 (318)
T ss_pred             eEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcC-CEEEEEEcCCCCCCHHHHH
Confidence            48999988  5789999998742          34688888887 799999999988754 4799999999999999998


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC--------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA--------  481 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~--------  481 (615)
                      ....          .+++.++..++.|++.||.|||+++   ++||||||+|||+++++.+||+|||+++..        
T Consensus        88 ~~~~----------~l~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~  154 (318)
T cd05570          88 QRSG----------RFDEPRARFYAAEIVLGLQFLHERG---IIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTTS  154 (318)
T ss_pred             HHcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---eEccCCCHHHeEECCCCcEEecccCCCeecCcCCCccc
Confidence            7653          2899999999999999999999998   999999999999999999999999987531        


Q ss_pred             ---------------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          482 ---------------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       482 ---------------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                     ...++.++|||||||++|||++|+.||......   ....    .          +   ....  
T Consensus       155 ~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~---~~~~----~----------i---~~~~--  212 (318)
T cd05570         155 TFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDED---ELFQ----S----------I---LEDE--  212 (318)
T ss_pred             ceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCHH---HHHH----H----------H---HcCC--
Confidence                           112456899999999999999999999654311   1110    0          0   0000  


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCH-----HHHHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNM-----AEVVFN  581 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm-----~ev~~~  581 (615)
                      ..++......+.+++.+||+.||.+||++     .+++..
T Consensus       213 ~~~~~~~~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~~  252 (318)
T cd05570         213 VRYPRWLSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKGH  252 (318)
T ss_pred             CCCCCcCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHhcC
Confidence            11233344567899999999999999999     887764

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.97  E-value=7.7e-30  Score=272.61  Aligned_cols=222  Identities=23%  Similarity=0.319  Sum_probs=163.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCC----CcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQ----GNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~----~~~~lV~E~~~~GsL~~  407 (615)
                      |.||++..  +|+.||||++.         +.+.+|+++++.++|+||+++++++...+    ...++|+||+. ++|.+
T Consensus        14 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~   92 (372)
T cd07853          14 GVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIYVVTELMQ-SDLHK   92 (372)
T ss_pred             EEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEEEEeeccc-cCHHH
Confidence            58999986  78999999875         24678999999999999999999886433    15799999997 58888


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++....          .+++..+..++.|++.||+|||+++   ++||||||+|||++.++.+||+|||+++...     
T Consensus        93 ~~~~~~----------~l~~~~~~~~~~qi~~aL~~LH~~~---ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~~  159 (372)
T cd07853          93 IIVSPQ----------PLSSDHVKVFLYQILRGLKYLHSAG---ILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESK  159 (372)
T ss_pred             HHhcCC----------CCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChHHEEECCCCCEEeccccceeecccCccc
Confidence            886543          3899999999999999999999998   9999999999999999999999999985321     


Q ss_pred             --------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhH---HHH--HHHHH
Q 047629          483 --------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV---EEK--REERL  537 (615)
Q Consensus       483 --------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~---~~~--~~~~~  537 (615)
                                          ..++.++|||||||++|||++|+.||......+..   ..+...+..   +..  .....
T Consensus       160 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~---~~i~~~~g~~~~~~~~~~~~~~  236 (372)
T cd07853         160 HMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQL---DLITDLLGTPSLEAMRSACEGA  236 (372)
T ss_pred             cCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHH---HHHHHHcCCCCHHHHHHhhHHH
Confidence                                11356789999999999999999999764432211   111111100   000  00001


Q ss_pred             hhhc-----CCc-CCC--CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          538 RNWM-----DPN-LES--FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       538 ~~~~-----dp~-l~~--~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ...+     .+. ...  ....+....+.+|+.+|++.||++|||+.|++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  288 (372)
T cd07853         237 RAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALAH  288 (372)
T ss_pred             HHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhcC
Confidence            1111     010 000  1112234567899999999999999999999875

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.97  E-value=2.1e-29  Score=258.03  Aligned_cols=210  Identities=20%  Similarity=0.325  Sum_probs=161.4

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      +.||+|..  +++.||+|.+.        .++.+|++++.+++|+||+++++++... ...++||||+++|+|..+.   
T Consensus        15 ~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~l~~~~---   90 (279)
T cd06619          15 GTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVE-NRISICTEFMDGGSLDVYR---   90 (279)
T ss_pred             eEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEEC-CEEEEEEecCCCCChHHhh---
Confidence            48999986  78999999874        2467899999999999999999998764 4789999999999997652   


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                                 .+++..+..++.|++.||.|||+.+   ++|+||||+|||++.++.+||+|||++....          
T Consensus        91 -----------~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  156 (279)
T cd06619          91 -----------KIPEHVLGRIAVAVVKGLTYLWSLK---ILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIAKTYVGT  156 (279)
T ss_pred             -----------cCCHHHHHHHHHHHHHHHHHHHHCC---EeeCCCCHHHEEECCCCCEEEeeCCcceecccccccCCCCC
Confidence                       2678889999999999999999998   9999999999999999999999999985321          


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCCh
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPI  551 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~  551 (615)
                                 ...+.++||||||+++|||++|+.|+................          ..+.....+.+.   ..
T Consensus       157 ~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~---~~  223 (279)
T cd06619         157 NAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLL----------QCIVDEDPPVLP---VG  223 (279)
T ss_pred             hhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHH----------HHHhccCCCCCC---CC
Confidence                       124568999999999999999999986533221111000000          011111112221   11


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          552 DGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       552 ~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      .....+.+++.+|++.+|++||+++|++..-.
T Consensus       224 ~~~~~~~~li~~~l~~~P~~Rp~~~eil~~~~  255 (279)
T cd06619         224 QFSEKFVHFITQCMRKQPKERPAPENLMDHPF  255 (279)
T ss_pred             cCCHHHHHHHHHHhhCChhhCCCHHHHhcCcc
Confidence            22345789999999999999999999998743

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=9.3e-30  Score=272.46  Aligned_cols=205  Identities=20%  Similarity=0.280  Sum_probs=158.1

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||||++..          .+.+|++++.+++|+||+++++++.+. ...++||||+++|+|.+++.
T Consensus        15 g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~-~~~~lv~E~~~gg~L~~~l~   93 (377)
T cd05629          15 GEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDA-QYLYLIMEFLPGGDLMTMLI   93 (377)
T ss_pred             EEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcC-CeeEEEEeCCCCCcHHHHHH
Confidence            58999887  789999998852          256799999999999999999998754 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC---------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA---------  481 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~---------  481 (615)
                      ...          .+++.....++.|++.||+|||+.+   |+||||||+|||++.++.+||+|||+++..         
T Consensus        94 ~~~----------~~~~~~~~~~~~ql~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~  160 (377)
T cd05629          94 KYD----------TFSEDVTRFYMAECVLAIEAVHKLG---FIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYY  160 (377)
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHEEECCCCCEEEeecccccccccccccccc
Confidence            543          3888899999999999999999998   999999999999999999999999998411         


Q ss_pred             -------------------------------------------------------------CCCCCCcccchhHHHHHHH
Q 047629          482 -------------------------------------------------------------TNDVMPKFDVFAFGVVLLE  500 (615)
Q Consensus       482 -------------------------------------------------------------~~~~~~k~DV~SfGvvl~E  500 (615)
                                                                                   ...++.++|||||||++||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~e  240 (377)
T cd05629         161 QKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFE  240 (377)
T ss_pred             cccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecchhhhh
Confidence                                                                         0124568999999999999


Q ss_pred             HHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC-CcCCCCCChHHHHHHHHHHHHhhhcCCCC---CCCHH
Q 047629          501 LLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD-PNLESFYPIDGALSLATLARACTMDKSLS---RPNMA  576 (615)
Q Consensus       501 lltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d-p~l~~~~~~~~~~~l~~l~~~C~~~dP~~---RPsm~  576 (615)
                      |++|+.||......+   ..   ..           +..+.+ ..+..  .......+.+++..|+. +|.+   |+++.
T Consensus       241 lltG~~Pf~~~~~~~---~~---~~-----------i~~~~~~~~~p~--~~~~s~~~~dli~~lL~-~~~~r~~r~~~~  300 (377)
T cd05629         241 CLIGWPPFCSENSHE---TY---RK-----------IINWRETLYFPD--DIHLSVEAEDLIRRLIT-NAENRLGRGGAH  300 (377)
T ss_pred             hhcCCCCCCCCCHHH---HH---HH-----------HHccCCccCCCC--CCCCCHHHHHHHHHHhc-CHhhcCCCCCHH
Confidence            999999997543211   01   10           000000 00111  01123457889999997 6665   46999


Q ss_pred             HHHHH
Q 047629          577 EVVFN  581 (615)
Q Consensus       577 ev~~~  581 (615)
                      |++.+
T Consensus       301 ~~l~h  305 (377)
T cd05629         301 EIKSH  305 (377)
T ss_pred             HHhcC
Confidence            98886

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.97  E-value=1.2e-29  Score=266.74  Aligned_cols=207  Identities=21%  Similarity=0.277  Sum_probs=161.4

Q ss_pred             ceEEEEEE-----CCeEEEEEEccH-----------HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCH
Q 047629          343 KSVYRATI-----DGKVLAVKKIKE-----------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSL  405 (615)
Q Consensus       343 ~~Vy~~~~-----~g~~vAvK~~~~-----------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL  405 (615)
                      |.||++..     +|+.||+|.+++           .+..|+.++.++ +|+||+++++++.. ++..++||||+++|+|
T Consensus        14 g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~-~~~~~lv~e~~~~g~L   92 (332)
T cd05614          14 GKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQT-EAKLHLILDYVSGGEM   92 (332)
T ss_pred             EEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEec-CCEEEEEEeCCCCCcH
Confidence            47998765     578999998853           245799999999 59999999998764 4478999999999999


Q ss_pred             HHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---
Q 047629          406 DKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---  482 (615)
Q Consensus       406 ~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---  482 (615)
                      .+++....          .+++.++..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...   
T Consensus        93 ~~~l~~~~----------~~~~~~~~~~~~qi~~~l~~lH~~~---ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~~  159 (332)
T cd05614          93 FTHLYQRD----------NFSEDEVRFYSGEIILALEHLHKLG---IVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEE  159 (332)
T ss_pred             HHHHHHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---cEecCCCHHHeEECCCCCEEEeeCcCCccccccC
Confidence            99997643          2889999999999999999999998   9999999999999999999999999986421   


Q ss_pred             ----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhh
Q 047629          483 ----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNW  540 (615)
Q Consensus       483 ----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  540 (615)
                                            ...+.++|||||||++|||++|+.||..........   .+.          ..+. .
T Consensus       160 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~---~~~----------~~~~-~  225 (332)
T cd05614         160 KERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQS---EVS----------RRIL-K  225 (332)
T ss_pred             CCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCCCHH---HHH----------HHHh-c
Confidence                                  013468999999999999999999997543221111   011          0111 1


Q ss_pred             cCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHHH
Q 047629          541 MDPNLESFYPIDGALSLATLARACTMDKSLSRP-----NMAEVVFN  581 (615)
Q Consensus       541 ~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~~  581 (615)
                      .++.+    +......+.+++.+|++.||++||     +++|+++.
T Consensus       226 ~~~~~----~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h  267 (332)
T cd05614         226 CDPPF----PSFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEH  267 (332)
T ss_pred             CCCCC----CCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHcC
Confidence            22333    223344578999999999999999     77788764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.97  E-value=1e-29  Score=267.06  Aligned_cols=210  Identities=20%  Similarity=0.319  Sum_probs=161.0

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||++..  +++.+|+|.+++.          +..|+.++.++ +||||+++++++... +..++||||+++|+|..++
T Consensus         9 g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~-~~~~lv~E~~~~~~L~~~~   87 (329)
T cd05618           9 AKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTE-SRLFFVIEYVNGGDLMFHM   87 (329)
T ss_pred             eEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeC-CEEEEEEeCCCCCCHHHHH
Confidence            48999987  6789999998642          45688888777 899999999988754 4799999999999999988


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      ....          .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...       
T Consensus        88 ~~~~----------~l~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~~~  154 (329)
T cd05618          88 QRQR----------KLPEEHARFYSAEISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTS  154 (329)
T ss_pred             HHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCccc
Confidence            6543          2889999999999999999999998   9999999999999999999999999986421       


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChh--HHHHHHHHHHHhHHHHHHHHHhhhcCCc
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKT--AVLWKEIREVLKVEEKREERLRNWMDPN  544 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~dp~  544 (615)
                                      ..++.++|||||||++|||++|+.||........  .....++...             +....
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~-------------i~~~~  221 (329)
T cd05618         155 TFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQV-------------ILEKQ  221 (329)
T ss_pred             cccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHH-------------HhcCC
Confidence                            1245689999999999999999999963221110  0000001100             01111


Q ss_pred             CCCCCChHHHHHHHHHHHHhhhcCCCCCCC------HHHHHHH
Q 047629          545 LESFYPIDGALSLATLARACTMDKSLSRPN------MAEVVFN  581 (615)
Q Consensus       545 l~~~~~~~~~~~l~~l~~~C~~~dP~~RPs------m~ev~~~  581 (615)
                        ..+|......+.+++.+|++.||++||+      +.|++++
T Consensus       222 --~~~p~~~~~~~~~ll~~~L~~dP~~R~~~~~~~~~~~i~~h  262 (329)
T cd05618         222 --IRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH  262 (329)
T ss_pred             --CCCCCCCCHHHHHHHHHHhcCCHHHcCCCCCCCCHHHHhcC
Confidence              1233344556789999999999999998      5676654

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.97  E-value=9.3e-30  Score=271.72  Aligned_cols=214  Identities=21%  Similarity=0.234  Sum_probs=163.4

Q ss_pred             cccccccccc----ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEE
Q 047629          333 MNLSEHYSIG----KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLV  396 (615)
Q Consensus       333 ~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV  396 (615)
                      .+|.....+|    |.||++..  +++.+|+|.+++          .+.+|+.+++.++||||+++++++.+. ...++|
T Consensus        43 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~-~~~~lv  121 (370)
T cd05621          43 EDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDD-KYLYMV  121 (370)
T ss_pred             HHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcC-CEEEEE
Confidence            4444444455    48999987  678999998853          256899999999999999999988754 479999


Q ss_pred             EeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecC
Q 047629          397 YEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFS  476 (615)
Q Consensus       397 ~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  476 (615)
                      |||+++|+|.+++...           .+++.+...++.|++.||+|||+++   |+||||||+|||+++++.+||+|||
T Consensus       122 ~Ey~~gg~L~~~l~~~-----------~~~~~~~~~~~~qil~aL~~LH~~~---IvHrDLKp~NILl~~~~~~kL~DFG  187 (370)
T cd05621         122 MEYMPGGDLVNLMSNY-----------DVPEKWAKFYTAEVVLALDAIHSMG---LIHRDVKPDNMLLDKHGHLKLADFG  187 (370)
T ss_pred             EcCCCCCcHHHHHHhc-----------CCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHEEECCCCCEEEEecc
Confidence            9999999999999643           2788899999999999999999998   9999999999999999999999999


Q ss_pred             CCCCCCC----------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHh
Q 047629          477 LAAPATN----------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLK  528 (615)
Q Consensus       477 la~~~~~----------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~  528 (615)
                      +++....                            .++.++|||||||++|||++|+.||.......   .         
T Consensus       188 ~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~~~---~---------  255 (370)
T cd05621         188 TCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVG---T---------  255 (370)
T ss_pred             cceecccCCceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCHHH---H---------
Confidence            9854210                            13468999999999999999999997543110   0         


Q ss_pred             HHHHHHHHHhhhcCCcCCCCCCh--HHHHHHHHHHHHhhhcCCCC--CCCHHHHHHH
Q 047629          529 VEEKREERLRNWMDPNLESFYPI--DGALSLATLARACTMDKSLS--RPNMAEVVFN  581 (615)
Q Consensus       529 ~~~~~~~~~~~~~dp~l~~~~~~--~~~~~l~~l~~~C~~~dP~~--RPsm~ev~~~  581 (615)
                              ..++++....-.++.  .....+.+++..|+..++.+  ||++.|++++
T Consensus       256 --------~~~i~~~~~~~~~p~~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~h  304 (370)
T cd05621         256 --------YSKIMDHKNSLNFPEDVEISKHAKNLICAFLTDREVRLGRNGVEEIKQH  304 (370)
T ss_pred             --------HHHHHhCCcccCCCCcccCCHHHHHHHHHHccCchhccCCCCHHHHhcC
Confidence                    111111110011111  22345678888898755544  8999999886

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.97  E-value=1.9e-29  Score=265.46  Aligned_cols=222  Identities=25%  Similarity=0.409  Sum_probs=168.2

Q ss_pred             ceEEEEEEC---------CeEEEEEEcc--------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCC
Q 047629          343 KSVYRATID---------GKVLAVKKIK--------EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGS  404 (615)
Q Consensus       343 ~~Vy~~~~~---------g~~vAvK~~~--------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~Gs  404 (615)
                      +.||++...         +..||+|.++        +++.+|++++.++ +|+||++++++|.+. +..++++||+++|+
T Consensus        26 g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~-~~~~lv~e~~~~g~  104 (334)
T cd05100          26 GQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD-GPLYVLVEYASKGN  104 (334)
T ss_pred             CcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccC-CceEEEEecCCCCc
Confidence            478988641         2368999875        2467899999999 899999999998754 47899999999999


Q ss_pred             HHHhhccCCCCCCC------CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCC
Q 047629          405 LDKWLHPKSKSSSS------SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA  478 (615)
Q Consensus       405 L~~~L~~~~~~~~~------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  478 (615)
                      |.+++.........      ......++|.+++.++.|++.||.|||+++   ++||||||+|||++.++.+||+|||++
T Consensus       105 L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~g---ivH~dlkp~Nill~~~~~~kL~Dfg~~  181 (334)
T cd05100         105 LREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQK---CIHRDLAARNVLVTEDNVMKIADFGLA  181 (334)
T ss_pred             HHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCC---eeccccccceEEEcCCCcEEECCcccc
Confidence            99999764321000      001124899999999999999999999998   999999999999999999999999998


Q ss_pred             CCCC-------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHH
Q 047629          479 APAT-------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEK  532 (615)
Q Consensus       479 ~~~~-------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~  532 (615)
                      +...                         ...+.++||||||+++|||++ |+.|+......   ...    .       
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~---~~~----~-------  247 (334)
T cd05100         182 RDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVE---ELF----K-------  247 (334)
T ss_pred             eecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCCHH---HHH----H-------
Confidence            6321                         113458999999999999998 88887643311   000    0       


Q ss_pred             HHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          533 REERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       533 ~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                         .+..    ......+......+.+++.+||+.+|++||+|.|+++.|..+....
T Consensus       248 ---~~~~----~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~~~~  297 (334)
T cd05100         248 ---LLKE----GHRMDKPANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVLTVT  297 (334)
T ss_pred             ---HHHc----CCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHhhhc
Confidence               0100    0111223344456889999999999999999999999999887443

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.97  E-value=1.5e-29  Score=264.40  Aligned_cols=202  Identities=23%  Similarity=0.344  Sum_probs=157.2

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||++..  +++.||||.++.+          +..|..++... +|+||+++++++... +..++||||+++|+|.+++
T Consensus         9 g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~-~~~~lv~e~~~gg~L~~~~   87 (316)
T cd05592           9 GKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTK-EHLFFVMEYLNGGDLMFHI   87 (316)
T ss_pred             eEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcC-CEEEEEEcCCCCCcHHHHH
Confidence            58999987  5789999998643          23466666654 899999999988654 4799999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      ....          .+++.+...++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...       
T Consensus        88 ~~~~----------~~~~~~~~~~~~qi~~al~~LH~~~---ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~~~~  154 (316)
T cd05592          88 QSSG----------RFDEARARFYAAEIICGLQFLHKKG---IIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKAS  154 (316)
T ss_pred             HHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---EEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCCccc
Confidence            7543          2888999999999999999999998   9999999999999999999999999986421       


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                      ..++.++|||||||++|||++|+.||......+   ...              .+.. ..+   
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~~~---~~~--------------~i~~-~~~---  213 (316)
T cd05592         155 TFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDE---LFD--------------SILN-DRP---  213 (316)
T ss_pred             cccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCHHH---HHH--------------HHHc-CCC---
Confidence                            124568999999999999999999997543211   000              0110 111   


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCHH-HHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNMA-EVVF  580 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~-ev~~  580 (615)
                       .++......+.+++..||+.||.+||++. ++.+
T Consensus       214 -~~~~~~~~~~~~ll~~~l~~~P~~R~~~~~~l~~  247 (316)
T cd05592         214 -HFPRWISKEAKDCLSKLFERDPTKRLGVDGDIRQ  247 (316)
T ss_pred             -CCCCCCCHHHHHHHHHHccCCHHHcCCChHHHHc
Confidence             12333344578999999999999999975 4543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.97  E-value=8.8e-30  Score=266.79  Aligned_cols=198  Identities=23%  Similarity=0.316  Sum_probs=154.9

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHH-HHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELR-ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~-~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||++..  +|+.||+|.+...          +..|.. +++.++||||+++++++.+. ...++||||+++|+|..++
T Consensus         9 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~-~~~~lv~e~~~~g~L~~~l   87 (323)
T cd05575           9 GKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTA-DKLYFVLDYVNGGELFFHL   87 (323)
T ss_pred             eEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeC-CEEEEEEcCCCCCCHHHHH
Confidence            48999998  6899999998632          233444 45778999999999988754 4789999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      ....          .+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+++...       
T Consensus        88 ~~~~----------~~~~~~~~~~~~qi~~~l~~lH~~g---ivH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~  154 (323)
T cd05575          88 QRER----------SFPEPRARFYAAEIASALGYLHSLN---IIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTTS  154 (323)
T ss_pred             HhcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCCHHHeEECCCCcEEEeccCCCcccccCCCccc
Confidence            7643          2889999999999999999999998   9999999999999999999999999985421       


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                      ..++.++|||||||++|||++|+.||......   ...   ..          .+..  ...+ 
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~---~~~---~~----------i~~~--~~~~-  215 (323)
T cd05575         155 TFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTA---EMY---DN----------ILNK--PLRL-  215 (323)
T ss_pred             cccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCCHH---HHH---HH----------HHcC--CCCC-
Confidence                            12456899999999999999999999754311   111   00          0111  0111 


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNMA  576 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~  576 (615)
                         +......+.+++.+|++.||.+||+++
T Consensus       216 ---~~~~~~~~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         216 ---KPNISVSARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             ---CCCCCHHHHHHHHHHhhcCHHhCCCCC
Confidence               122244578999999999999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.97  E-value=1.9e-29  Score=258.54  Aligned_cols=224  Identities=19%  Similarity=0.321  Sum_probs=163.3

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||+|..  +|+.||||+++         ..+.+|+.++++++|+||+++++++.+ ++..++|+||++ |+|.+++..
T Consensus        14 ~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~~v~e~~~-~~l~~~~~~   91 (285)
T cd07861          14 GVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQ-ESRLYLIFEFLS-MDLKKYLDS   91 (285)
T ss_pred             eEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEee-CCeEEEEEecCC-CCHHHHHhc
Confidence            48999987  68999999875         246789999999999999999999875 447999999997 689998865


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------  482 (615)
                      ....       ..+++.++..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||++....         
T Consensus        92 ~~~~-------~~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~  161 (285)
T cd07861          92 LPKG-------QYMDAELVKSYLYQILQGILFCHSRR---VLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRVYTHE  161 (285)
T ss_pred             CCCC-------CcCCHHHHHHHHHHHHHHHHHHHhCC---eeecCCCHHHEEEcCCCcEEECcccceeecCCCcccccCC
Confidence            4321       13899999999999999999999998   9999999999999999999999999875321         


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHH----------hHHHHHHHHH
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVL----------KVEEKREERL  537 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~----------~~~~~~~~~~  537 (615)
                                     ...+.++||||||+++|||++|+.|+.......  ..........          ..........
T Consensus       162 ~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (285)
T cd07861         162 VVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEID--QLFRIFRILGTPTEDVWPGVTSLPDYKNTF  239 (285)
T ss_pred             cccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHH--HHHHHHHHhCCCChhhhhcchhhHHHHhhc
Confidence                           113567999999999999999999987543211  1111110000          0000000011


Q ss_pred             hhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          538 RNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       538 ~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..+..+.+. ........++.+++.+|++.||.+|||+.||++.
T Consensus       240 ~~~~~~~~~-~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~~  282 (285)
T cd07861         240 PKWKKGSLR-SAVKNLDEDGLDLLEKMLIYDPAKRISAKKALNH  282 (285)
T ss_pred             cccCcchhH-HhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhcC
Confidence            111111110 0111233456899999999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.97  E-value=4.4e-30  Score=280.25  Aligned_cols=226  Identities=19%  Similarity=0.290  Sum_probs=160.6

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---HHHHHHHHHHhcCCCCcccEEEEEEcC-----C--CcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---DVTEELRILQRINHANLVKLMGVSSDS-----Q--GNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---~~~~Ei~~l~~l~H~niv~l~g~~~~~-----~--~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||+|..  +++.||||++..   ...+|+.+|++++|+||+++.+++...     .  ..+++||||+++ +|.+++.
T Consensus        80 g~Vy~~~~~~~~~~vAiK~i~~~~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l~lvmE~~~~-~l~~~~~  158 (440)
T PTZ00036         80 GVVYEAICIDTSEKVAIKKVLQDPQYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFLNVVMEFIPQ-TVHKYMK  158 (440)
T ss_pred             EEEEEEEECCCCCEEEEEEEecCcchHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceEEEEEEecCCc-cHHHHHH
Confidence            58999987  689999998853   356799999999999999999876421     1  135689999984 7877775


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC-cEEEeecCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF-KAKIANFSLAAPAT-------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-~~kl~DFGla~~~~-------  482 (615)
                      ......      ..+++..+..++.|++.||+|||+++   |+||||||+|||++.++ .+||+|||+++...       
T Consensus       159 ~~~~~~------~~l~~~~~~~~~~qi~~gL~yLH~~~---IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~~~~~~~~  229 (440)
T PTZ00036        159 HYARNN------HALPLFLVKLYSYQLCRALAYIHSKF---ICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLAGQRSVS  229 (440)
T ss_pred             HHhhcC------CCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCcCHHHEEEcCCCCceeeeccccchhccCCCCccc
Confidence            322110      13889999999999999999999998   99999999999999764 79999999986321       


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH--HHHH---HHHhhh-
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE--EKRE---ERLRNW-  540 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~--~~~~---~~~~~~-  540 (615)
                                      ..++.++|||||||++|||++|+.||......+...   .+...+...  ....   ....+. 
T Consensus       230 ~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~---~i~~~~~~p~~~~~~~~~~~~~~~~  306 (440)
T PTZ00036        230 YICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLV---RIIQVLGTPTEDQLKEMNPNYADIK  306 (440)
T ss_pred             CCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHH---HHHHHhCCCCHHHHHHhchhhhccc
Confidence                            125678999999999999999999997544322111   111111000  0000   000000 


Q ss_pred             ----cCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          541 ----MDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       541 ----~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                          ....+...++.....++.+|+.+||+.||.+|||+.|++++
T Consensus       307 ~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~h  351 (440)
T PTZ00036        307 FPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALAD  351 (440)
T ss_pred             CCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCC
Confidence                00111112233344568999999999999999999999875

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.97  E-value=2.7e-29  Score=255.24  Aligned_cols=205  Identities=25%  Similarity=0.373  Sum_probs=158.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------------HHHHHHHHHHHhcCCCCcccEEEEEEcC-CCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK------------EDVTEELRILQRINHANLVKLMGVSSDS-QGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~-~~~~~lV~E~~~~GsL~~  407 (615)
                      +.||++..  +|+.||+|+++            ..+.+|+.++++++|+||+++++++.+. +...++++||+++++|.+
T Consensus        16 g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l~~e~~~~~~L~~   95 (266)
T cd06651          16 GRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLTIFMEYMPGGSVKD   95 (266)
T ss_pred             EEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEEEEEeCCCCCcHHH
Confidence            47999986  68899999874            2367799999999999999999987653 335789999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++....          .+++.....++.|++.||+|||+.+   ++||||||+||+++.++.+||+|||+++...     
T Consensus        96 ~l~~~~----------~l~~~~~~~~~~qi~~~l~~LH~~~---i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~  162 (266)
T cd06651          96 QLKAYG----------ALTESVTRKYTRQILEGMSYLHSNM---IVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMS  162 (266)
T ss_pred             HHHHcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEECCCCCEEEccCCCcccccccccc
Confidence            997543          2889999999999999999999987   9999999999999999999999999885321     


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                           ...+.++|||||||++|||++|+.|+.......      .+.          .......
T Consensus       163 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~~~------~~~----------~~~~~~~  226 (266)
T cd06651         163 GTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMA------AIF----------KIATQPT  226 (266)
T ss_pred             CCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccchHH------HHH----------HHhcCCC
Confidence                                 113467999999999999999999987543110      000          0011111


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+.+    +......+.+++ +||..+|++||+|+||+++
T Consensus       227 ~~~~----~~~~~~~~~~li-~~~~~~p~~Rp~~~eil~h  261 (266)
T cd06651         227 NPQL----PSHISEHARDFL-GCIFVEARHRPSAEELLRH  261 (266)
T ss_pred             CCCC----chhcCHHHHHHH-HHhcCChhhCcCHHHHhcC
Confidence            2222    222233445555 7888999999999999763

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.97  E-value=1.7e-29  Score=262.77  Aligned_cols=222  Identities=20%  Similarity=0.353  Sum_probs=162.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      +.||+|..  +++.||+|+++        ..+.+|++++++++|+||+++++++... +..++||||+++ +|.+++...
T Consensus        20 g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~-~l~~~~~~~   97 (309)
T cd07872          20 ATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTD-KSLTLVFEYLDK-DLKQYMDDC   97 (309)
T ss_pred             EEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeC-CeEEEEEeCCCC-CHHHHHHhc
Confidence            48999987  67899999886        2467899999999999999999998754 479999999975 898888654


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                      ..         .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...          
T Consensus        98 ~~---------~~~~~~~~~~~~qi~~aL~~lH~~~---ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  165 (309)
T cd07872          98 GN---------IMSMHNVKIFLYQILRGLAYCHRRK---VLHRDLKPQNLLINERGELKLADFGLARAKSVPTKTYSNEV  165 (309)
T ss_pred             CC---------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEECccccceecCCCcccccccc
Confidence            32         3789999999999999999999998   9999999999999999999999999985321          


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH--HHHH-----HHHhhhc
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE--EKRE-----ERLRNWM  541 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~--~~~~-----~~~~~~~  541 (615)
                                    ..++.++|||||||++|||++|+.||......+....   +...+...  ....     ......-
T Consensus       166 ~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (309)
T cd07872         166 VTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHL---IFRLLGTPTEETWPGISSNDEFKNYN  242 (309)
T ss_pred             ccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHH---HHHHhCCCCHHHHhhhcchhhhhhhh
Confidence                          1235679999999999999999999976543222111   11111000  0000     0000000


Q ss_pred             CCcCCC----CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 DPNLES----FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp~l~~----~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+....    .........+.+++.+|++.||.+|||++|++++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h  286 (309)
T cd07872         243 FPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMKH  286 (309)
T ss_pred             cCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhcC
Confidence            010000    0001123456899999999999999999999874

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.97  E-value=2.1e-29  Score=253.99  Aligned_cols=206  Identities=23%  Similarity=0.341  Sum_probs=162.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      +.||++..  +++.+|+|.++        +.+..|+.++++++|+||+++++.+.+. +..+++|||+++|+|.+++...
T Consensus        14 g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~l~~~~~~~   92 (255)
T cd08219          14 GRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEAD-GHLYIVMEYCDGGDLMQKIKLQ   92 (255)
T ss_pred             eEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEEC-CEEEEEEeeCCCCcHHHHHHhc
Confidence            47888876  68999999874        3467899999999999999999988754 4899999999999999998653


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC---------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN---------  483 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~---------  483 (615)
                      ...        .+++.....++.|++.||.|||+++   ++|+||||+||++++++.++++|||+++....         
T Consensus        93 ~~~--------~~~~~~~~~~~~~i~~al~~lH~~~---i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~  161 (255)
T cd08219          93 RGK--------LFPEDTILQWFVQMCLGVQHIHEKR---VLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYV  161 (255)
T ss_pred             cCC--------CCCHHHHHHHHHHHHHHHHHHhhCC---cccCCCCcceEEECCCCcEEEcccCcceeeccccccccccc
Confidence            321        3789999999999999999999998   99999999999999999999999999854321         


Q ss_pred             --------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          484 --------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       484 --------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                    ..+.++||||||+++|||++|+.||........      ..           .+..   ... ...
T Consensus       162 ~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~------~~-----------~~~~---~~~-~~~  220 (255)
T cd08219         162 GTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKNL------IL-----------KVCQ---GSY-KPL  220 (255)
T ss_pred             CCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCHHHH------HH-----------HHhc---CCC-CCC
Confidence                          135689999999999999999999975331000      00           0000   000 111


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +......+.+++.+||+.||++||++.|++..
T Consensus       221 ~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         221 PSHYSYELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             CcccCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence            22334457899999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.97  E-value=1.5e-30  Score=247.54  Aligned_cols=218  Identities=21%  Similarity=0.292  Sum_probs=168.6

Q ss_pred             eEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcC----CCcEEEEEeecCCCCHHHhhc
Q 047629          344 SVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDS----QGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       344 ~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~----~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      -||.+.-  +++.+|+|++.       +...+|++..++++|||++++++++...    ..+.||++.|...|+|.+.+.
T Consensus        36 fv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~yll~Pyy~~Gsl~d~i~  115 (302)
T KOG2345|consen   36 FVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAYLLLPYYKRGSLLDEIE  115 (302)
T ss_pred             eeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEEEEeehhccccHHHHHH
Confidence            5666653  78999999985       3467899999999999999999886432    224899999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ......      ..+++.+.++|+.+|++||++||+. .|++.||||||.|||+.+.+.+++.|||.+....        
T Consensus       116 ~~k~kg------~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~i~i~~~~~  188 (302)
T KOG2345|consen  116 RLKIKG------NFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSDSGLPVLMDLGSATQAPIQIEGSRQ  188 (302)
T ss_pred             HHhhcC------CccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecCCCceEEEeccCccccceEeechHH
Confidence            654321      2599999999999999999999998 5789999999999999999999999999885431        


Q ss_pred             ---------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHH
Q 047629          483 ---------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREE  535 (615)
Q Consensus       483 ---------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~  535 (615)
                                                 ..+++++|||||||+||+|+.|..||+...+.....                 
T Consensus       189 a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSl-----------------  251 (302)
T KOG2345|consen  189 ALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSL-----------------  251 (302)
T ss_pred             HHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCeE-----------------
Confidence                                       114679999999999999999999997543211100                 


Q ss_pred             HHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcc
Q 047629          536 RLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLT  586 (615)
Q Consensus       536 ~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~  586 (615)
                       ......+.+.-.-..-....+.+++++|++.||.+||+..|++..+..+.
T Consensus       252 -aLAv~n~q~s~P~~~~yse~l~~lik~mlqvdP~qRP~i~~ll~~~d~Li  301 (302)
T KOG2345|consen  252 -ALAVQNAQISIPNSSRYSEALHQLIKSMLQVDPNQRPTIPELLSKLDDLI  301 (302)
T ss_pred             -EEeeeccccccCCCCCccHHHHHHHHHHhcCCcccCCCHHHHHHHHHhhc
Confidence             00111111110000113446899999999999999999999999987653

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.97  E-value=8.6e-30  Score=257.78  Aligned_cols=205  Identities=20%  Similarity=0.356  Sum_probs=157.8

Q ss_pred             ceEEEEEEC---------CeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATID---------GKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~~---------g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      +.||+|...         ...+|+|.+.       +.+.+|+.++++++|+|++++++++... ...++||||+++|+|.
T Consensus         9 ~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~-~~~~lv~e~~~~g~L~   87 (258)
T cd05078           9 TKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCG-DESIMVQEYVKFGSLD   87 (258)
T ss_pred             hhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeC-CCcEEEEecCCCCcHH
Confidence            479988762         2348888875       2467899999999999999999998764 4789999999999999


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCc--------EEEeecCCC
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK--------AKIANFSLA  478 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~--------~kl~DFGla  478 (615)
                      +++.....         .++|..++.++.|++.||+|||+++   |+||||||+||+++.++.        +|++|||++
T Consensus        88 ~~l~~~~~---------~~~~~~~~~~~~qi~~~l~~lH~~~---iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~  155 (258)
T cd05078          88 TYLKKNKN---------LINISWKLEVAKQLAWALHFLEDKG---LTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGIS  155 (258)
T ss_pred             HHHhcCCC---------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCccceEEEecccccccCCCceEEecccccc
Confidence            99976543         3899999999999999999999998   999999999999987765        699999987


Q ss_pred             CCCC--------------------CCCCCcccchhHHHHHHHHHcCCC-CCCCCCCChhHHHHHHHHHHHhHHHHHHHHH
Q 047629          479 APAT--------------------NDVMPKFDVFAFGVVLLELLSGKK-ATRTTENGKTAVLWKEIREVLKVEEKREERL  537 (615)
Q Consensus       479 ~~~~--------------------~~~~~k~DV~SfGvvl~ElltG~~-p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  537 (615)
                      ....                    ...+.++||||||+++|||++|.. |+........       ...          .
T Consensus       156 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~~~-------~~~----------~  218 (258)
T cd05078         156 ITVLPKEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQKK-------LQF----------Y  218 (258)
T ss_pred             cccCCchhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccHHHH-------HHH----------H
Confidence            5321                    124568999999999999999964 4432221000       000          0


Q ss_pred             hhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          538 RNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       538 ~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      ..  .    ..++.....++.+++..||+.||++|||++|+++.|+
T Consensus       219 ~~--~----~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~  258 (258)
T cd05078         219 ED--R----HQLPAPKWTELANLINQCMDYEPDFRPSFRAIIRDLN  258 (258)
T ss_pred             Hc--c----ccCCCCCcHHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence            00  0    1122223356899999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.97  E-value=2.6e-29  Score=253.36  Aligned_cols=207  Identities=24%  Similarity=0.347  Sum_probs=162.9

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||++..  +++.+|+|++..         .+.+|++++++++|+|++++.+.+...++..+++|||+++++|.+++..
T Consensus        14 ~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~   93 (257)
T cd08223          14 GEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMGFCEGGDLYHKLKE   93 (257)
T ss_pred             eEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEecccCCCcHHHHHHH
Confidence            47998887  678999998752         3667999999999999999998875445467999999999999999976


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------  482 (615)
                      ....        .+++.++..++.+++.||+|||+.+   ++||||||+||+++.++.++|+|||++....         
T Consensus        94 ~~~~--------~l~~~~~~~~~~~l~~~l~~lH~~~---i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~  162 (257)
T cd08223          94 QKGK--------LLPENQVVEWFVQIAMALQYLHEKH---ILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMASTL  162 (257)
T ss_pred             hcCC--------CCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCchhEEEecCCcEEEecccceEEecccCCccccc
Confidence            4321        3899999999999999999999998   9999999999999999999999999875331         


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                    ...+.++||||||++++||++|+.|+.......      ....          ...... +    .
T Consensus       163 ~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~------~~~~----------~~~~~~-~----~  221 (257)
T cd08223         163 IGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNS------LVYR----------IIEGKL-P----P  221 (257)
T ss_pred             cCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHH------HHHH----------HHhcCC-C----C
Confidence                          113468999999999999999999986433110      0000          011111 1    1


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+......+.+++.+|++.||++||++.|++++
T Consensus       222 ~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  254 (257)
T cd08223         222 MPKDYSPELGELIATMLSKRPEKRPSVKSILRQ  254 (257)
T ss_pred             CccccCHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence            223344568899999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=1.2e-29  Score=285.82  Aligned_cols=220  Identities=28%  Similarity=0.423  Sum_probs=175.4

Q ss_pred             ceEEEEEEC---------CeEEEEEEcc--------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCC
Q 047629          343 KSVYRATID---------GKVLAVKKIK--------EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGS  404 (615)
Q Consensus       343 ~~Vy~~~~~---------g~~vAvK~~~--------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~Gs  404 (615)
                      |.|++|...         ...||||.++        +++..|+++|+.+ +|+||+.++|+|.. ++..++|.||+++|+
T Consensus       310 G~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~-~~~~~~v~Ey~~~G~  388 (609)
T KOG0200|consen  310 GQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQ-DGPLYVIVEYAEHGD  388 (609)
T ss_pred             cceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeecc-CCceEEEEEeccCCc
Confidence            578888752         3569999987        4578899999999 79999999999986 568999999999999


Q ss_pred             HHHhhccCCCCCCCCCc------ccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCC
Q 047629          405 LDKWLHPKSKSSSSSGS------VIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA  478 (615)
Q Consensus       405 L~~~L~~~~~~~~~~~~------~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  478 (615)
                      |.+||+..+........      ...|+..+++.++.|||.|++||++..   +|||||.++|||+.++..+||+|||+|
T Consensus       389 L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~---~vHRDLAaRNVLi~~~~~~kIaDFGla  465 (609)
T KOG0200|consen  389 LLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVP---CVHRDLAARNVLITKNKVIKIADFGLA  465 (609)
T ss_pred             HHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCC---ccchhhhhhhEEecCCCEEEEccccce
Confidence            99999887610000000      023899999999999999999999987   999999999999999999999999999


Q ss_pred             CCCC--------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHH
Q 047629          479 APAT--------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEE  531 (615)
Q Consensus       479 ~~~~--------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~  531 (615)
                      +...                          ..++.|+|||||||+|||++| |..|+........  +++          
T Consensus       466 r~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~~~--l~~----------  533 (609)
T KOG0200|consen  466 RDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIPPTEE--LLE----------  533 (609)
T ss_pred             eccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCCcHHH--HHH----------
Confidence            7421                          125679999999999999999 8888865221111  111          


Q ss_pred             HHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcc
Q 047629          532 KREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLT  586 (615)
Q Consensus       532 ~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~  586 (615)
                              .+.+.-+-+.|..+..++.++++.||+.+|++||++.|+++.++.+.
T Consensus       534 --------~l~~G~r~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~~l  580 (609)
T KOG0200|consen  534 --------FLKEGNRMEQPEHCSDEIYDLMKSCWNADPEDRPTFSECVEFFEKHL  580 (609)
T ss_pred             --------HHhcCCCCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHH
Confidence                    11222223456677788999999999999999999999999998854

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.97  E-value=2.6e-29  Score=257.50  Aligned_cols=223  Identities=21%  Similarity=0.358  Sum_probs=164.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||++..  +|+.||+|++.         +.+.+|++++++++|+|++++++++... ...++||||++++.|..++..
T Consensus        15 ~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~-~~~~~v~e~~~~~~l~~~~~~   93 (286)
T cd07847          15 GVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRK-RKLHLVFEYCDHTVLNELEKN   93 (286)
T ss_pred             eEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeC-CEEEEEEeccCccHHHHHHhC
Confidence            48999987  58999999874         2367899999999999999999998754 478999999999989888754


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------  482 (615)
                      ..          .++|.++..++.|++.||+|||+.+   ++||||||+||+++.++.+||+|||++....         
T Consensus        94 ~~----------~~~~~~~~~~~~ql~~~l~~LH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~  160 (286)
T cd07847          94 PR----------GVPEHLIKKIIWQTLQAVNFCHKHN---CIHRDVKPENILITKQGQIKLCDFGFARILTGPGDDYTDY  160 (286)
T ss_pred             CC----------CCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCChhhEEEcCCCcEEECccccceecCCCcccccCc
Confidence            33          2899999999999999999999987   9999999999999999999999999986421         


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHH------HHhhhc
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREE------RLRNWM  541 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~  541 (615)
                                     ...+.++||||||+++|||++|+.||......+......  ............      ......
T Consensus       161 ~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  238 (286)
T cd07847         161 VATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIR--KTLGDLIPRHQQIFSTNQFFKGLS  238 (286)
T ss_pred             ccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHH--HHhCCCChHHhhhccccccccccc
Confidence                           113468999999999999999999997654322211110  000000000000      000111


Q ss_pred             CCcCCCCCCh-----HHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 DPNLESFYPI-----DGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp~l~~~~~~-----~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .|......+.     .....+.+++.+||+.+|++||++.|++.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~  283 (286)
T cd07847         239 IPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLEH  283 (286)
T ss_pred             CCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhcC
Confidence            1111111111     123567899999999999999999998763

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.97  E-value=1.9e-29  Score=258.75  Aligned_cols=229  Identities=22%  Similarity=0.342  Sum_probs=170.3

Q ss_pred             HHHHHHccccccccccc----ceEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhc-CCCCcccEEEEEEc----
Q 047629          326 EVIMESTMNLSEHYSIG----KSVYRATI--DGKVLAVKKIK------EDVTEELRILQRI-NHANLVKLMGVSSD----  388 (615)
Q Consensus       326 ~~l~~at~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l-~H~niv~l~g~~~~----  388 (615)
                      +.+..++++|.-...+|    +.||++..  +|+.+|+|.++      ..+.+|+.+++++ +|+||+++++++..    
T Consensus        11 ~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~   90 (286)
T cd06638          11 DSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVK   90 (286)
T ss_pred             ecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHHHHhcCCCeeeeeeeeeecccC
Confidence            34444555555545555    48999987  68899999875      3467899999999 79999999998753    


Q ss_pred             CCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC
Q 047629          389 SQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF  468 (615)
Q Consensus       389 ~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~  468 (615)
                      .++..++||||+++|+|.+++.......      ..+++..+..++.|++.||.|||+++   ++||||||+||+++.++
T Consensus        91 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~nili~~~~  161 (286)
T cd06638          91 NGDQLWLVLELCNGGSVTDLVKGFLKRG------ERMEEPIIAYILHEALMGLQHLHVNK---TIHRDVKGNNILLTTEG  161 (286)
T ss_pred             CCCeEEEEEeecCCCCHHHHHHHhhccC------ccccHHHHHHHHHHHHHHHHHHHhCC---ccccCCCHHhEEECCCC
Confidence            2235899999999999999886432111      13889999999999999999999987   99999999999999999


Q ss_pred             cEEEeecCCCCCCC----------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHH
Q 047629          469 KAKIANFSLAAPAT----------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLW  520 (615)
Q Consensus       469 ~~kl~DFGla~~~~----------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~  520 (615)
                      .+||+|||+++...                            ..++.++|||||||++|||++|+.|+........    
T Consensus       162 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~~~----  237 (286)
T cd06638         162 GVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHPMRA----  237 (286)
T ss_pred             CEEEccCCceeecccCCCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCchhHH----
Confidence            99999999875321                            1135589999999999999999999865432110    


Q ss_pred             HHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          521 KEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                        +.           .......+.+.  .+......+.+++.+||+.||++||++.|+++.+
T Consensus       238 --~~-----------~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~~  284 (286)
T cd06638         238 --LF-----------KIPRNPPPTLH--QPELWSNEFNDFIRKCLTKDYEKRPTVSDLLQHV  284 (286)
T ss_pred             --Hh-----------hccccCCCccc--CCCCcCHHHHHHHHHHccCCcccCCCHHHHhhcc
Confidence              00           00001111110  1111234588999999999999999999999764

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.97  E-value=2.2e-29  Score=258.42  Aligned_cols=219  Identities=22%  Similarity=0.347  Sum_probs=166.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      +.||++..  +|+.+|+|.+.        +.+.+|+++++.++|+||+++++++... +..++||||+++|+|.+++...
T Consensus        19 g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~~   97 (284)
T cd06620          19 GSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNE-NNICMCMEFMDCGSLDRIYKKG   97 (284)
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecC-CEEEEEEecCCCCCHHHHHHhc
Confidence            58999987  58999999764        3477899999999999999999998765 4799999999999999998754


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHh-CCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE-HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------  482 (615)
                      .          .+++..+..++.+++.||.|||+ ++   ++||||||+||++++++.++|+|||++....         
T Consensus        98 ~----------~~~~~~~~~~~~~i~~~l~~LH~~~~---i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~~~~~~~  164 (284)
T cd06620          98 G----------PIPVEILGKIAVAVVEGLTYLYNVHR---IMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIADTFVG  164 (284)
T ss_pred             c----------CCCHHHHHHHHHHHHHHHHHHHHhcC---eeccCCCHHHEEECCCCcEEEccCCcccchhhhccCcccc
Confidence            3          38899999999999999999997 45   9999999999999999999999999875321         


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  ...+.++|||||||++|||++|+.||......+...  ......       .+.+...+.........
T Consensus       165 ~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~  235 (284)
T cd06620         165 TSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQ--DDPMGI-------LDLLQQIVQEPPPRLPS  235 (284)
T ss_pred             CcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhh--hhhhHH-------HHHHHHHhhccCCCCCc
Confidence                        123568999999999999999999997543211100  000000       00111111111111111


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHh
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLSV  584 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~  584 (615)
                      .+....+.+++.+|++.||++||++.|++++..-
T Consensus       236 ~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~~~  269 (284)
T cd06620         236 SDFPEDLRDFVDACLLKDPTERPTPQQLCAMPPF  269 (284)
T ss_pred             hhcCHHHHHHHHHHhcCCcccCcCHHHHhcCccc
Confidence            1244568899999999999999999999987543

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.97  E-value=3.2e-29  Score=252.85  Aligned_cols=204  Identities=23%  Similarity=0.390  Sum_probs=159.4

Q ss_pred             ceEEEEEEC--C----------eEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCC
Q 047629          343 KSVYRATID--G----------KVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGS  404 (615)
Q Consensus       343 ~~Vy~~~~~--g----------~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~Gs  404 (615)
                      +.||+|...  +          ..+++|.++      ..+.+|+.++++++|+||++++|++..  ...++|+||+++|+
T Consensus         9 ~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~--~~~~lv~e~~~~~~   86 (259)
T cd05037           9 TNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKHLVKLYGVCVR--DENIMVEEYVKFGP   86 (259)
T ss_pred             ceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcCCCcchhheeeEEec--CCcEEEEEcCCCCc
Confidence            479999883  3          247888765      346789999999999999999999876  46899999999999


Q ss_pred             HHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC-------cEEEeecCC
Q 047629          405 LDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF-------KAKIANFSL  477 (615)
Q Consensus       405 L~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-------~~kl~DFGl  477 (615)
                      |.+++.....         .+++..+..++.|++.||.|||+++   |+||||||+|||++.++       .+|++|||+
T Consensus        87 L~~~l~~~~~---------~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~  154 (259)
T cd05037          87 LDVFLHREKN---------NVSLHWKLDVAKQLASALHYLEDKK---LVHGNVCGKNILVARYGLNEGYVPFIKLSDPGI  154 (259)
T ss_pred             HHHHHHhhcc---------CCCHHHHHHHHHHHHHHHHHHhhCC---eecccCccceEEEecCccccCCceeEEeCCCCc
Confidence            9999986542         3889999999999999999999987   99999999999999887       799999999


Q ss_pred             CCCCC-------------------C--CCCCcccchhHHHHHHHHHcC-CCCCCCCCCChhHHHHHHHHHHHhHHHHHHH
Q 047629          478 AAPAT-------------------N--DVMPKFDVFAFGVVLLELLSG-KKATRTTENGKTAVLWKEIREVLKVEEKREE  535 (615)
Q Consensus       478 a~~~~-------------------~--~~~~k~DV~SfGvvl~ElltG-~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~  535 (615)
                      +....                   .  ..+.++||||||+++|||++| ..|+......+...                 
T Consensus       155 a~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~~~~~-----------------  217 (259)
T cd05037         155 PITVLSREERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSSEKER-----------------  217 (259)
T ss_pred             ccccccccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCchhHHH-----------------
Confidence            86521                   1  245679999999999999994 66665433111000                 


Q ss_pred             HHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          536 RLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       536 ~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      ...   ++.   ..+......+.+++..||..+|.+||++.||++.|.
T Consensus       218 ~~~---~~~---~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~  259 (259)
T cd05037         218 FYQ---DQH---RLPMPDCAELANLINQCWTYDPTKRPSFRAILRDLN  259 (259)
T ss_pred             HHh---cCC---CCCCCCchHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence            000   000   011111256889999999999999999999998873

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.97  E-value=2.2e-29  Score=252.45  Aligned_cols=218  Identities=24%  Similarity=0.371  Sum_probs=174.7

Q ss_pred             ceEEEEEEC-------CeEEEEEEccHH--------HHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATID-------GKVLAVKKIKED--------VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~~-------g~~vAvK~~~~~--------~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||+|.|.       .+.|-||.++..        +..|--.+..+.|||+..+.|++.+.....++.|.++.-|+|..
T Consensus       298 Gri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~ie~~~~P~V~y~~~~~gNLK~  377 (563)
T KOG1024|consen  298 GRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVSIEDYATPFVLYPATGVGNLKS  377 (563)
T ss_pred             hheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEEeeccCcceEEEeccCcchHHH
Confidence            579999762       355778887743        55677788888999999999999876667899999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ||...+..+.  .....++-.+...++.|++.|++|||.++   +||.||.++|+++|+..++||+|-.++|.+-     
T Consensus       378 FL~~Cr~~~~--~~aqtvtt~qlV~masQla~am~hlh~~~---ViHkDiAaRNCvIdd~LqVkltDsaLSRDLFP~DYh  452 (563)
T KOG1024|consen  378 FLQICRGDDP--SYAQTVTTIQLVLMASQLAMAMEHLHNHG---VIHKDIAARNCVIDDQLQVKLTDSALSRDLFPGDYH  452 (563)
T ss_pred             HHHHhccCCC--ccccchhHHHHHHHHHHHHHHHHHHHhcC---cccchhhhhcceehhheeEEeccchhccccCccccc
Confidence            9985543221  12245888999999999999999999998   9999999999999999999999999987541     


Q ss_pred             --------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 --------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 --------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                          +.++..+|||||||+||||+| |+.|+...+.-+...       .+.             
T Consensus       453 cLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDPfEm~~-------ylk-------------  512 (563)
T KOG1024|consen  453 CLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDPFEMEH-------YLK-------------  512 (563)
T ss_pred             ccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCHHHHHH-------HHh-------------
Confidence                                125678999999999999999 999987655422211       110             


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcc
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLT  586 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~  586 (615)
                      | .-+-..|..|+.++..++..||..+|++||+++|++.-|+++.
T Consensus       513 d-GyRlaQP~NCPDeLf~vMacCWallpeeRPsf~Qlv~cLseF~  556 (563)
T KOG1024|consen  513 D-GYRLAQPFNCPDELFTVMACCWALLPEERPSFSQLVICLSEFH  556 (563)
T ss_pred             c-cceecCCCCCcHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHH
Confidence            0 0111246678889999999999999999999999999998764

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.97  E-value=1.2e-29  Score=260.09  Aligned_cols=222  Identities=22%  Similarity=0.338  Sum_probs=163.4

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||++..  .|+.+|+|++.         +.+.+|++++++++|+||+++++++.+ ++..++|+||+++++|..+...
T Consensus        15 ~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~l~~~~~~   93 (286)
T cd07846          15 GMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRR-KKRLYLVFEFVDHTVLDDLEKY   93 (286)
T ss_pred             eEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhccc-CCeEEEEEecCCccHHHHHHhc
Confidence            47999998  57999999874         246789999999999999999999865 4579999999999999888764


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------  482 (615)
                      ..          .++|.++..++.|++.||.|||+.+   ++||||+|+||++++++.+||+|||++....         
T Consensus        94 ~~----------~~~~~~~~~~~~~i~~~l~~LH~~~---i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~  160 (286)
T cd07846          94 PN----------GLDESRVRKYLFQILRGIEFCHSHN---IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYTDY  160 (286)
T ss_pred             cC----------CCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEECCCCcEEEEeeeeeeeccCCccccCcc
Confidence            32          2899999999999999999999997   9999999999999999999999999875321         


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH-HHHH------HHHhhh
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE-EKRE------ERLRNW  540 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~-~~~~------~~~~~~  540 (615)
                                     ...+.++||||||+++|||++|+.|+......   ..+..+....... ....      ......
T Consensus       161 ~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (286)
T cd07846         161 VATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDI---DQLYHIIKCLGNLIPRHQEIFQKNPLFAGM  237 (286)
T ss_pred             cceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchH---HHHHHHHHHhCCCchhhHHHhccchHhhcc
Confidence                           11345799999999999999999888643321   1111111111000 0000      000011


Q ss_pred             cCCcCCCCC-----ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          541 MDPNLESFY-----PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       541 ~dp~l~~~~-----~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..+......     .......+.+++.+||+.+|++||+|.|+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  283 (286)
T cd07846         238 RLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLHH  283 (286)
T ss_pred             ccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhcC
Confidence            111111000     11234568999999999999999999998863

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.97  E-value=2.5e-29  Score=262.65  Aligned_cols=202  Identities=25%  Similarity=0.370  Sum_probs=158.7

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|..  +++.||||.++.+          ...|..++... +||||+++++++.+. +..++||||+++|+|.+++
T Consensus         9 g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~-~~~~lv~ey~~~g~L~~~l   87 (316)
T cd05619           9 GKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTK-ENLFFVMEYLNGGDLMFHI   87 (316)
T ss_pred             EEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeC-CEEEEEEeCCCCCcHHHHH
Confidence            58999987  5789999998743          34577777764 999999999998754 4799999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC--------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA--------  481 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~--------  481 (615)
                      ....          .+++.+...++.|++.||+|||+++   ++||||||+|||++.++.+||+|||+++..        
T Consensus        88 ~~~~----------~~~~~~~~~~~~qi~~al~~LH~~~---ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  154 (316)
T cd05619          88 QSCH----------KFDLPRATFYAAEIICGLQFLHSKG---IVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTC  154 (316)
T ss_pred             HHcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---eEeCCCCHHHEEECCCCCEEEccCCcceECCCCCCcee
Confidence            7543          2889999999999999999999998   999999999999999999999999987531        


Q ss_pred             ---------------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          482 ---------------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       482 ---------------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                     ...++.++|||||||++|||++|+.||......   .+...              +. ...+.  
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~---~~~~~--------------i~-~~~~~--  214 (316)
T cd05619         155 TFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEE---ELFQS--------------IR-MDNPC--  214 (316)
T ss_pred             eecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCHH---HHHHH--------------HH-hCCCC--
Confidence                           112456899999999999999999999754321   11110              00 01111  


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCHH-HHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNMA-EVVF  580 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~-ev~~  580 (615)
                        ++......+.+++.+|++.||++||++. ++.+
T Consensus       215 --~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~  247 (316)
T cd05619         215 --YPRWLTREAKDILVKLFVREPERRLGVKGDIRQ  247 (316)
T ss_pred             --CCccCCHHHHHHHHHHhccCHhhcCCChHHHHc
Confidence              1222334578999999999999999997 5543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.97  E-value=2.3e-29  Score=263.69  Aligned_cols=202  Identities=23%  Similarity=0.342  Sum_probs=158.2

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||++..  +++.||||.++++          +..|..++..+ +|++|+++.+++.+. +..++||||+++|+|.+++
T Consensus        14 g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~-~~~~lv~E~~~~g~L~~~~   92 (323)
T cd05616          14 GKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTM-DRLYFVMEYVNGGDLMYQI   92 (323)
T ss_pred             eEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecC-CEEEEEEcCCCCCCHHHHH
Confidence            58999987  5789999988642          34577777777 588899999987654 4799999999999999998


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      ....          .+++.++..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...       
T Consensus        93 ~~~~----------~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~~~~~  159 (323)
T cd05616          93 QQVG----------RFKEPHAVFYAAEIAIGLFFLHSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVTTK  159 (323)
T ss_pred             HHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---EEecCCCHHHeEECCCCcEEEccCCCceecCCCCCccc
Confidence            7543          2889999999999999999999998   9999999999999999999999999986321       


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                      ..++.++|||||||++|||++|+.||......+   +..                 .+.+..  
T Consensus       160 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~~---~~~-----------------~i~~~~--  217 (323)
T cd05616         160 TFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE---LFQ-----------------SIMEHN--  217 (323)
T ss_pred             cCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCHHH---HHH-----------------HHHhCC--
Confidence                            124578999999999999999999997543211   110                 011111  


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCH-----HHHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNM-----AEVVF  580 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm-----~ev~~  580 (615)
                      ..++......+.+++.+|++.||.+|++.     .++.+
T Consensus       218 ~~~p~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~  256 (323)
T cd05616         218 VAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE  256 (323)
T ss_pred             CCCCCcCCHHHHHHHHHHcccCHHhcCCCCCCCHHHHhc
Confidence            12333444567899999999999999984     56654

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.97  E-value=3.5e-30  Score=247.44  Aligned_cols=204  Identities=27%  Similarity=0.399  Sum_probs=160.8

Q ss_pred             eEEEEEE--CCeEEEEEEcc---------------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCH
Q 047629          344 SVYRATI--DGKVLAVKKIK---------------EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSL  405 (615)
Q Consensus       344 ~Vy~~~~--~g~~vAvK~~~---------------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL  405 (615)
                      .|-++..  .|+..|+|++.               +.-.+|++||+++ .||+|+++.+++. .+...++|+|.|+.|.|
T Consensus        32 ~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~ye-s~sF~FlVFdl~prGEL  110 (411)
T KOG0599|consen   32 VVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYE-SDAFVFLVFDLMPRGEL  110 (411)
T ss_pred             hhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeecc-CcchhhhhhhhcccchH
Confidence            3444444  57888888774               3356799999998 7999999999976 45589999999999999


Q ss_pred             HHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--
Q 047629          406 DKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--  483 (615)
Q Consensus       406 ~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--  483 (615)
                      .++|...-          .++++...+|+.|+..|++|||...   ||||||||+|||+|+++++||+|||+|.....  
T Consensus       111 FDyLts~V----------tlSEK~tR~iMrqlfegVeylHa~~---IVHRDLKpENILlddn~~i~isDFGFa~~l~~Ge  177 (411)
T KOG0599|consen  111 FDYLTSKV----------TLSEKETRRIMRQLFEGVEYLHARN---IVHRDLKPENILLDDNMNIKISDFGFACQLEPGE  177 (411)
T ss_pred             HHHhhhhe----------eecHHHHHHHHHHHHHHHHHHHHhh---hhhcccChhheeeccccceEEeccceeeccCCch
Confidence            99997643          4999999999999999999999998   99999999999999999999999999965421  


Q ss_pred             --------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHH
Q 047629          484 --------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERL  537 (615)
Q Consensus       484 --------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  537 (615)
                                                .++..+|+||.||+||.|+.|.+||.....   ..+                 +
T Consensus       178 kLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQ---mlM-----------------L  237 (411)
T KOG0599|consen  178 KLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQ---MLM-----------------L  237 (411)
T ss_pred             hHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHH---HHH-----------------H
Confidence                                      256789999999999999999999864321   100                 1


Q ss_pred             hhhcCCcC--CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          538 RNWMDPNL--ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       538 ~~~~dp~l--~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +-++....  ...--.+....+.+|+.+|++.||.+|-|++|++.+
T Consensus       238 R~ImeGkyqF~speWadis~~~KdLIsrlLqVdp~~Ritake~LaH  283 (411)
T KOG0599|consen  238 RMIMEGKYQFRSPEWADISATVKDLISRLLQVDPTKRITAKEALAH  283 (411)
T ss_pred             HHHHhcccccCCcchhhccccHHHHHHHHHeeCchhcccHHHHhcC
Confidence            11111111  111112334467899999999999999999999875

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=4.3e-29  Score=265.36  Aligned_cols=163  Identities=22%  Similarity=0.335  Sum_probs=135.6

Q ss_pred             cccccccccc----ceEEEEEE--CCeEEEEEEcc-HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCH
Q 047629          333 MNLSEHYSIG----KSVYRATI--DGKVLAVKKIK-EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSL  405 (615)
Q Consensus       333 ~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~-~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL  405 (615)
                      .+|.....+|    |.||+|..  .++.||+|... .....|+.++++++|+||+++++++... ...++|+||+. |+|
T Consensus        66 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~-~~l  143 (357)
T PHA03209         66 LGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKGTTLIEAMLLQNVNHPSVIRMKDTLVSG-AITCMVLPHYS-SDL  143 (357)
T ss_pred             cCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCccccHHHHHHHHhCCCCCCcChhheEEeC-CeeEEEEEccC-CcH
Confidence            3455555555    58999998  56789999865 3456799999999999999999998764 47899999995 699


Q ss_pred             HHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---
Q 047629          406 DKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---  482 (615)
Q Consensus       406 ~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---  482 (615)
                      .+++.....         .++|..+..|+.||+.||.|||+++   |+||||||+|||++.++.+||+|||+++...   
T Consensus       144 ~~~l~~~~~---------~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~  211 (357)
T PHA03209        144 YTYLTKRSR---------PLPIDQALIIEKQILEGLRYLHAQR---IIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAP  211 (357)
T ss_pred             HHHHHhccC---------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEEecCccccccccCc
Confidence            999875432         3899999999999999999999998   9999999999999999999999999986321   


Q ss_pred             -------------------CCCCCcccchhHHHHHHHHHcCCCCCC
Q 047629          483 -------------------NDVMPKFDVFAFGVVLLELLSGKKATR  509 (615)
Q Consensus       483 -------------------~~~~~k~DV~SfGvvl~ElltG~~p~~  509 (615)
                                         ..++.++|||||||++|||+++..++.
T Consensus       212 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f  257 (357)
T PHA03209        212 AFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIF  257 (357)
T ss_pred             ccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCccc
Confidence                               124578999999999999999766553

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.97  E-value=5.1e-29  Score=258.94  Aligned_cols=207  Identities=26%  Similarity=0.375  Sum_probs=163.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||+|..  +|+.||+|.+.          .++.+|++++++++|+||+++.++|.+. +..++|+||++ |+|.+++.
T Consensus        29 g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~-~~~~lv~e~~~-g~l~~~~~  106 (307)
T cd06607          29 GAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLRE-HTAWLVMEYCL-GSASDILE  106 (307)
T ss_pred             eEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeC-CeEEEEHHhhC-CCHHHHHH
Confidence            58999987  68999999874          2467899999999999999999998864 47899999997 68888775


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ....         .+++..+..++.|++.||.|||+.+   ++||||+|+||++++++.+||+|||++....        
T Consensus       107 ~~~~---------~l~~~~~~~~~~ql~~~L~~LH~~~---i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~~~~~~~  174 (307)
T cd06607         107 VHKK---------PLQEVEIAAICHGALQGLAYLHSHE---RIHRDIKAGNILLTEPGTVKLADFGSASLVSPANSFVGT  174 (307)
T ss_pred             Hccc---------CCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCcccEEECCCCCEEEeecCcceecCCCCCccCC
Confidence            4332         3899999999999999999999998   9999999999999999999999999875321        


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                    ..++.++||||||+++|||++|+.|+........      ..           .+.....+.+   
T Consensus       175 ~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~~~------~~-----------~~~~~~~~~~---  234 (307)
T cd06607         175 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA------LY-----------HIAQNDSPTL---  234 (307)
T ss_pred             ccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccHHHH------HH-----------HHhcCCCCCC---
Confidence                          1245689999999999999999999864331100      00           0000011111   


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      .+......+.+++.+||+.||++||+|.+|+.+..
T Consensus       235 ~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~  269 (307)
T cd06607         235 SSNDWSDYFRNFVDSCLQKIPQDRPSSEELLKHRF  269 (307)
T ss_pred             CchhhCHHHHHHHHHHhcCChhhCcCHHHHhcChh
Confidence            12234456899999999999999999999998654

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.97  E-value=5.4e-29  Score=253.54  Aligned_cols=209  Identities=22%  Similarity=0.389  Sum_probs=163.3

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-----------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-----------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENG  403 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-----------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~G  403 (615)
                      +.||+|..  +|+.+|+|.++                 +.+.+|++++++++|+|++++++++... ...++|+||+++|
T Consensus        15 ~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~   93 (272)
T cd06629          15 GRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTE-EYLSIFLEYVPGG   93 (272)
T ss_pred             eEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccC-CceEEEEecCCCC
Confidence            48999986  68999999764                 1356799999999999999999998754 4789999999999


Q ss_pred             CHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC
Q 047629          404 SLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN  483 (615)
Q Consensus       404 sL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~  483 (615)
                      +|.+++....          .+++..+..++.|++.||.|||+++   ++||||||+||+++.++.+|++|||+++....
T Consensus        94 ~L~~~l~~~~----------~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~  160 (272)
T cd06629          94 SIGSCLRTYG----------RFEEQLVRFFTEQVLEGLAYLHSKG---ILHRDLKADNLLVDADGICKISDFGISKKSDD  160 (272)
T ss_pred             cHHHHHhhcc----------CCCHHHHHHHHHHHHHHHHHHhhCC---eeecCCChhhEEEcCCCeEEEeeccccccccc
Confidence            9999997653          3889999999999999999999987   99999999999999999999999998853210


Q ss_pred             ---------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHH
Q 047629          484 ---------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREER  536 (615)
Q Consensus       484 ---------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  536 (615)
                                                 ..+.++||||||+++||+++|+.|+......+  .    ....          
T Consensus       161 ~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~--~----~~~~----------  224 (272)
T cd06629         161 IYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIA--A----MFKL----------  224 (272)
T ss_pred             cccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcchHH--H----HHHh----------
Confidence                                       13567999999999999999999986432111  0    0000          


Q ss_pred             HhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          537 LRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       537 ~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ......+.+......+....+.+++..||+.+|.+||+|.||+++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  269 (272)
T cd06629         225 GNKRSAPPIPPDVSMNLSPVALDFLNACFTINPDNRPTARELLQH  269 (272)
T ss_pred             hccccCCcCCccccccCCHHHHHHHHHHhcCChhhCCCHHHHhhC
Confidence            000111111111222334568899999999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.97  E-value=3.1e-29  Score=254.33  Aligned_cols=205  Identities=22%  Similarity=0.377  Sum_probs=162.7

Q ss_pred             ceEEEEEE-CCeEEEEEEcc-------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI-DGKVLAVKKIK-------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~-------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      +.||+|.. +|+.+|||.++             ..+.+|++++++++|+||+++.+++.+. +..++++||+++|+|.++
T Consensus        14 ~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~   92 (265)
T cd06631          14 GTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDD-NTISIFMEFVPGGSISSI   92 (265)
T ss_pred             eEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecC-CeEEEEEecCCCCcHHHH
Confidence            48999987 78899999774             2367899999999999999999998764 478999999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      +....          .+++..+..++.|++.||+|||+.+   ++|+||||+||++++++.+||+|||++....      
T Consensus        93 l~~~~----------~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~  159 (265)
T cd06631          93 LNRFG----------PLPEPVFCKYTKQILDGVAYLHNNC---VVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHG  159 (265)
T ss_pred             HHhcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---cccCCcCHHhEEECCCCeEEeccchhhHhhhhccccc
Confidence            97543          2789999999999999999999988   9999999999999999999999999875320      


Q ss_pred             -----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhh
Q 047629          483 -----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRN  539 (615)
Q Consensus       483 -----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  539 (615)
                                             ...+.++||||||+++|||++|+.|+.........         ..     ... ..
T Consensus       160 ~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~---------~~-----~~~-~~  224 (265)
T cd06631         160 THSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLAAM---------FY-----IGA-HR  224 (265)
T ss_pred             cccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChHHHH---------HH-----hhh-cc
Confidence                                   11346899999999999999999999754321100         00     000 00


Q ss_pred             hcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          540 WMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       540 ~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                      ...+.+.    ......+.+++.+||+.+|.+||++.|+++
T Consensus       225 ~~~~~~~----~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~  261 (265)
T cd06631         225 GLMPRLP----DSFSAAAIDFVTSCLTRDQHERPSALQLLR  261 (265)
T ss_pred             CCCCCCC----CCCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            1112222    233445789999999999999999999875

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.96  E-value=3.4e-29  Score=252.86  Aligned_cols=212  Identities=22%  Similarity=0.322  Sum_probs=163.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCC-CcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQ-GNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~-~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||++..  +|+.+|+|.++         +.+..|++++++++|+||+++++++...+ ...+++|||+++|+|.+++.
T Consensus        14 ~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~   93 (265)
T cd08217          14 GTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQ   93 (265)
T ss_pred             eEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEehhccCCCHHHHHH
Confidence            48999986  67899999874         23667999999999999999999876433 34789999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCC--CCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-----
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA--QPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-----  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~--~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-----  483 (615)
                      ......      ..+++..++.++.|++.||.|||..+  ...++|+||||+||+++.++.+|++|||++.....     
T Consensus        94 ~~~~~~------~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~  167 (265)
T cd08217          94 KCKKER------KYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFA  167 (265)
T ss_pred             HHhhcc------cCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccccccCCcccc
Confidence            642211      14899999999999999999999332  23399999999999999999999999998865321     


Q ss_pred             ------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          484 ------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       484 ------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                        ..+.++||||||+++|||++|+.|+......   ...              ..+.....   
T Consensus       168 ~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~---~~~--------------~~~~~~~~---  227 (265)
T cd08217         168 KTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQL---QLA--------------SKIKEGKF---  227 (265)
T ss_pred             cccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcCHH---HHH--------------HHHhcCCC---
Confidence                              1345789999999999999999998754311   100              01111111   


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       ...+......+.+++.+|++.+|++||++.||+++
T Consensus       228 -~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~  262 (265)
T cd08217         228 -RRIPYRYSSELNEVIKSMLNVDPDKRPSTEELLQL  262 (265)
T ss_pred             -CCCccccCHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence             12333445568999999999999999999999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=1.1e-29  Score=277.17  Aligned_cols=233  Identities=21%  Similarity=0.306  Sum_probs=164.4

Q ss_pred             cccccccc----ceEEEEEE--CCeEEEEEEcc-HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          335 LSEHYSIG----KSVYRATI--DGKVLAVKKIK-EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       335 ~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~-~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.....+|    |.||++..  .++.||||... ..+.+|+++|++++|+|||++++++... +..++|||++. |+|.+
T Consensus       171 y~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~~~~~~E~~iL~~L~HpnIv~l~~~~~~~-~~~~lv~e~~~-~~L~~  248 (461)
T PHA03211        171 FAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWYASSVHEARLLRRLSHPAVLALLDVRVVG-GLTCLVLPKYR-SDLYT  248 (461)
T ss_pred             eEEEEEEccCCCeEEEEEEECCCCCEEEEecccccCHHHHHHHHHHCCCCCCCcEEEEEEEC-CEEEEEEEccC-CCHHH
Confidence            44444454    47999998  57899999754 4577899999999999999999998754 47899999995 79999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++.....         .++|.+++.|+.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...     
T Consensus       249 ~l~~~~~---------~l~~~~~~~i~~qi~~aL~yLH~~g---IvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~  316 (461)
T PHA03211        249 YLGARLR---------PLGLAQVTAVARQLLSAIDYIHGEG---IIHRDIKTENVLVNGPEDICLGDFGAACFARGSWST  316 (461)
T ss_pred             HHHhcCC---------CCCHHHHHHHHHHHHHHHHHHHHCC---EEECcCCHHHEEECCCCCEEEcccCCceeccccccc
Confidence            9865432         3899999999999999999999998   9999999999999999999999999986421     


Q ss_pred             --------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCC-----hhHHHHHHHHHHHh-H-------
Q 047629          483 --------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENG-----KTAVLWKEIREVLK-V-------  529 (615)
Q Consensus       483 --------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~-----~~~~l~~~~~~~~~-~-------  529 (615)
                                          ..++.++|||||||+||||++|..++......     ....+...+...-. .       
T Consensus       317 ~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~  396 (461)
T PHA03211        317 PFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHA  396 (461)
T ss_pred             ccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCc
Confidence                                11456899999999999999988765432211     01111111111000 0       


Q ss_pred             HHHHHHHHhhh----cCCcCC-CCCC--hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          530 EEKREERLRNW----MDPNLE-SFYP--IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       530 ~~~~~~~~~~~----~dp~l~-~~~~--~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .......+...    ..+... ..+.  ......+.+|+.+|++.||.+|||+.|++++
T Consensus       397 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~h  455 (461)
T PHA03211        397 GSRLVSQYRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLRL  455 (461)
T ss_pred             chHHHHHHHhhhhcccCCccCCcchhhhccccchHHHHHHHHcccChhhCcCHHHHhhC
Confidence            00000000000    000000 0000  0112357889999999999999999999875

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.96  E-value=2.6e-29  Score=262.51  Aligned_cols=201  Identities=23%  Similarity=0.335  Sum_probs=157.9

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||++..  +|+.||+|.++..          ...|..++... +|+||+++++++.+. +..++||||+++|+|.+++
T Consensus         9 g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~-~~~~lv~E~~~~g~L~~~i   87 (316)
T cd05620           9 GKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTK-EHLFFVMEFLNGGDLMFHI   87 (316)
T ss_pred             eEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeC-CEEEEEECCCCCCcHHHHH
Confidence            48999988  6889999998643          34577777654 899999999998754 4799999999999999998


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC--------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA--------  481 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~--------  481 (615)
                      ....          .+++.+...++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++..        
T Consensus        88 ~~~~----------~~~~~~~~~~~~qi~~~l~~lH~~~---ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  154 (316)
T cd05620          88 QDKG----------RFDLYRATFYAAEIVCGLQFLHSKG---IIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRAS  154 (316)
T ss_pred             HHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHeEECCCCCEEeCccCCCeecccCCCcee
Confidence            7643          2889999999999999999999998   999999999999999999999999987531        


Q ss_pred             ---------------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          482 ---------------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       482 ---------------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                     ...++.++|||||||++|||++|+.||.....   ..++..              +. ...+.+ 
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~---~~~~~~--------------~~-~~~~~~-  215 (316)
T cd05620         155 TFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDE---DELFES--------------IR-VDTPHY-  215 (316)
T ss_pred             ccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH---HHHHHH--------------HH-hCCCCC-
Confidence                           01245689999999999999999999975431   111110              00 011222 


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCHH-HHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNMA-EVV  579 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~-ev~  579 (615)
                         +......+.+++..|++.||++||++. ++.
T Consensus       216 ---~~~~~~~~~~li~~~l~~dP~~R~~~~~~~~  246 (316)
T cd05620         216 ---PRWITKESKDILEKLFERDPTRRLGVVGNIR  246 (316)
T ss_pred             ---CCCCCHHHHHHHHHHccCCHHHcCCChHHHH
Confidence               222334578999999999999999984 555

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.96  E-value=4.2e-29  Score=258.39  Aligned_cols=205  Identities=21%  Similarity=0.367  Sum_probs=163.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      +.||+|..  +|+.||+|.+.       +.+.+|++++++++|+|++++++++... ...++|+||+++|+|.+++... 
T Consensus        33 g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~~-  110 (296)
T cd06655          33 GTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVG-DELFVVMEYLAGGSLTDVVTET-  110 (296)
T ss_pred             eEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecC-ceEEEEEEecCCCcHHHHHHhc-
Confidence            58999985  78999999875       3467899999999999999999998754 4799999999999999998643 


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                                .+++.++..++.|++.||+|||+++   ++||||||+||+++.++.+||+|||++....           
T Consensus       111 ----------~l~~~~~~~i~~~l~~al~~LH~~~---i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  177 (296)
T cd06655         111 ----------CMDEAQIAAVCRECLQALEFLHANQ---VIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVG  177 (296)
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEccCccchhcccccccCCCcCC
Confidence                      2899999999999999999999998   9999999999999999999999999875321           


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  ...+.++|||||||++|||++|+.||..........      .           +.....+.+  ..+
T Consensus       178 ~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~~~------~-----------~~~~~~~~~--~~~  238 (296)
T cd06655         178 TPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALY------L-----------IATNGTPEL--QNP  238 (296)
T ss_pred             CccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHH------H-----------HHhcCCccc--CCc
Confidence                        113567999999999999999999997544211100      0           000000111  112


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+....+.+++.+||..||.+||++.+++..
T Consensus       239 ~~~~~~~~~li~~~l~~dp~~Rpt~~~il~~  269 (296)
T cd06655         239 EKLSPIFRDFLNRCLEMDVEKRGSAKELLQH  269 (296)
T ss_pred             ccCCHHHHHHHHHHhhcChhhCCCHHHHhhC
Confidence            2334457899999999999999999999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.96  E-value=3e-29  Score=262.46  Aligned_cols=198  Identities=22%  Similarity=0.304  Sum_probs=154.6

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHH-HHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELR-ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~-~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      +.||++..  +|+.||+|.+.+.          +..|.. +++.++|+||+++++++.+. +..++||||+++|+|..++
T Consensus         9 g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l   87 (321)
T cd05603           9 GKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTA-EKLYFVLDYVNGGELFFHL   87 (321)
T ss_pred             EEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcC-CEEEEEEcCCCCCCHHHHH
Confidence            48999987  6899999998532          334443 57789999999999988754 4799999999999999988


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      ....          .+++.++..++.||+.||.|||+++   |+||||||+||+++.++.+||+|||+++...       
T Consensus        88 ~~~~----------~~~~~~~~~~~~qi~~~L~~lH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~  154 (321)
T cd05603          88 QRER----------CFLEPRARFYAAEVASAIGYLHSLN---IIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTS  154 (321)
T ss_pred             HHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeEECCCCCEEEccCCCCccCCCCCCccc
Confidence            6543          2788889999999999999999998   9999999999999999999999999876421       


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                      ..++.++|||||||++|||++|+.||......   ...   .           .+   ....  
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~---~~~---~-----------~i---~~~~--  212 (321)
T cd05603         155 TFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVS---QMY---D-----------NI---LHKP--  212 (321)
T ss_pred             cccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCCHH---HHH---H-----------HH---hcCC--
Confidence                            12456899999999999999999999754310   000   0           00   1111  


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNMA  576 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~  576 (615)
                      ...+......+.+++.+|++.||.+||+..
T Consensus       213 ~~~~~~~~~~~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         213 LQLPGGKTVAACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             CCCCCCCCHHHHHHHHHHccCCHhhcCCCC
Confidence            112333445688999999999999999754

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=4.7e-29  Score=254.39  Aligned_cols=204  Identities=25%  Similarity=0.385  Sum_probs=163.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      +.||+|..  +|+.+|+|.+.        ..+.+|++++++++|+|++++.+++.+. ...++|+||+++|+|.+++...
T Consensus        15 ~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~~v~e~~~~~~L~~~~~~~   93 (274)
T cd06609          15 GEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKG-SKLWIIMEYCGGGSCLDLLKPG   93 (274)
T ss_pred             eEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEEC-CeEEEEEEeeCCCcHHHHHhhc
Confidence            48999987  68999999875        2467899999999999999999988754 4789999999999999999754


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC---------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN---------  483 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~---------  483 (615)
                                 .+++..+..++.|++.||.|||+++   ++||||+|+||++++++.++++|||+++....         
T Consensus        94 -----------~~~~~~~~~~~~ql~~~l~~lh~~~---i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~  159 (274)
T cd06609          94 -----------KLDETYIAFILREVLLGLEYLHEEG---KIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFV  159 (274)
T ss_pred             -----------CCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEECCCCCEEEcccccceeeccccccccccc
Confidence                       2889999999999999999999988   99999999999999999999999998754311         


Q ss_pred             --------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          484 --------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       484 --------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                    ..+.++||||||+++|||++|+.|+........      .           ..+.....+.+... 
T Consensus       160 ~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~~------~-----------~~~~~~~~~~~~~~-  221 (274)
T cd06609         160 GTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPMRV------L-----------FLIPKNNPPSLEGN-  221 (274)
T ss_pred             CCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchHHH------H-----------HHhhhcCCCCCccc-
Confidence                          135689999999999999999999865432110      0           01111122222211 


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                        .....+.+++.+||..+|++||+++++++.
T Consensus       222 --~~~~~~~~~l~~~l~~~p~~Rpt~~~il~~  251 (274)
T cd06609         222 --KFSKPFKDFVSLCLNKDPKERPSAKELLKH  251 (274)
T ss_pred             --ccCHHHHHHHHHHhhCChhhCcCHHHHhhC
Confidence              033457899999999999999999999885

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=6.8e-30  Score=255.80  Aligned_cols=224  Identities=24%  Similarity=0.396  Sum_probs=166.5

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH---------HHHHHHHHHhcCCCCcccEEEEEEcC----CCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIKED---------VTEELRILQRINHANLVKLMGVSSDS----QGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~---------~~~Ei~~l~~l~H~niv~l~g~~~~~----~~~~~lV~E~~~~GsL~~  407 (615)
                      |.|..+..  +|+.||||++..-         ..+|+++|+.++|+||+.+.+....+    -...|+|+|+|+ -+|.+
T Consensus        36 GvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~DvYiV~elMe-tDL~~  114 (359)
T KOG0660|consen   36 GVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDVYLVFELME-TDLHQ  114 (359)
T ss_pred             eeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccceeEEehhHHh-hHHHH
Confidence            46666666  7899999999743         45799999999999999999987541    124899999995 48999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN----  483 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~----  483 (615)
                      .++...          .|+.....-+..|+++||.|+|+-+   ++||||||+|+|++.+...||+|||+|+....    
T Consensus       115 iik~~~----------~L~d~H~q~f~YQiLrgLKyiHSAn---ViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~~~  181 (359)
T KOG0660|consen  115 IIKSQQ----------DLTDDHAQYFLYQILRGLKYIHSAN---VIHRDLKPSNLLLNADCDLKICDFGLARYLDKFFED  181 (359)
T ss_pred             HHHcCc----------cccHHHHHHHHHHHHHhcchhhccc---ccccccchhheeeccCCCEEeccccceeeccccCcc
Confidence            998754          2888899999999999999999998   99999999999999999999999999987731    


Q ss_pred             ----------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHH---HHHHHHh
Q 047629          484 ----------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE---KREERLR  538 (615)
Q Consensus       484 ----------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~  538 (615)
                                            .+++..||||.||++.||++|++-|.+.+.-+...+.-.+......+.   ...++.+
T Consensus       182 ~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar  261 (359)
T KOG0660|consen  182 GFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKAR  261 (359)
T ss_pred             cchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHHH
Confidence                                  156789999999999999999998876654333222211111111000   0001111


Q ss_pred             hhcC--CcC-----CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          539 NWMD--PNL-----ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       539 ~~~d--p~l-----~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..+.  |..     ...+| ......++|..+++..||.+|+|++|.+++
T Consensus       262 ~yi~slp~~p~~~f~~~fp-~a~p~AidLlekmL~fdP~kRita~eAL~h  310 (359)
T KOG0660|consen  262 PYIKSLPQIPKQPFSSIFP-NANPLAIDLLEKMLVFDPKKRITAEEALAH  310 (359)
T ss_pred             HHHHhCCCCCCCCHHHHcC-CCCHHHHHHHHHHhccCccccCCHHHHhcC
Confidence            1111  111     11122 333457899999999999999999999985

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.96  E-value=5.9e-29  Score=253.66  Aligned_cols=216  Identities=23%  Similarity=0.407  Sum_probs=164.7

Q ss_pred             ceEEEEEE-------CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI-------DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~-------~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      +.||++..       +.+.+|+|.+.        ..+.+|++++++++|+||+++++++.+. ...++||||+++|+|.+
T Consensus        19 g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~   97 (275)
T cd05046          19 GEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREA-EPHYMILEYTDLGDLKQ   97 (275)
T ss_pred             eEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCC-CcceEEEEecCCCcHHH
Confidence            48999885       24679999874        3478899999999999999999998654 47899999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++........ ......+++.++..++.|++.||.|||+.+   ++||||||+||+++.++.+|++|||+++...     
T Consensus        98 ~i~~~~~~~~-~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~---i~H~dlkp~Nili~~~~~~~l~~~~~~~~~~~~~~~  173 (275)
T cd05046          98 FLRATKSKDE-KLKPPPLSTKQKVALCTQIALGMDHLSNAR---FVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYY  173 (275)
T ss_pred             HHHhcccccc-cccccCCCHHHHHHHHHHHHHHHHHhhhcC---cccCcCccceEEEeCCCcEEEcccccccccCccccc
Confidence            9976542110 011124899999999999999999999998   9999999999999999999999999975321     


Q ss_pred             -------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          483 -------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       483 -------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                         ...+.++||||||+++|||++ |..|+.......   .....                 ..
T Consensus       174 ~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~~---~~~~~-----------------~~  233 (275)
T cd05046         174 KLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEE---VLNRL-----------------QA  233 (275)
T ss_pred             ccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccchHH---HHHHH-----------------Hc
Confidence                               123557999999999999999 777875432211   01000                 00


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      ..+....+......+.+++.+||+.+|.+||++.|++..|+
T Consensus       234 ~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~  274 (275)
T cd05046         234 GKLELPVPEGCPSRLYKLMTRCWAVNPKDRPSFSELVSALG  274 (275)
T ss_pred             CCcCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhc
Confidence            01111112233456899999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.96  E-value=4.7e-30  Score=267.39  Aligned_cols=202  Identities=25%  Similarity=0.406  Sum_probs=168.0

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.||||+-  +++.||+|.+.+         .+.+|++|+++++|||||.+++++.. ..++|+|.||+.+ +|..+|..
T Consensus        16 g~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt-~~~~~vVte~a~g-~L~~il~~   93 (808)
T KOG0597|consen   16 GRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFET-SAHLWVVTEYAVG-DLFTILEQ   93 (808)
T ss_pred             ceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcc-cceEEEEehhhhh-hHHHHHHh
Confidence            58999986  679999998852         37889999999999999999999864 4589999999976 99999987


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--------  483 (615)
                      ...          |++.++..|+.|+..||.|||+++   |+|||+||+|||++.++.+|++|||+|+..+.        
T Consensus        94 d~~----------lpEe~v~~~a~~LVsaL~yLhs~r---ilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t~vltsi  160 (808)
T KOG0597|consen   94 DGK----------LPEEQVRAIAYDLVSALYYLHSNR---ILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNTSVLTSI  160 (808)
T ss_pred             ccC----------CCHHHHHHHHHHHHHHHHHHHhcC---cccccCCcceeeecCCCceeechhhhhhhcccCceeeeec
Confidence            654          999999999999999999999998   99999999999999999999999999986532        


Q ss_pred             ---------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          484 ---------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       484 ---------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                     .++..+|.||+||++||+.+|++||....          +.+..      +..+   -||.   .
T Consensus       161 kGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~s----------i~~Lv------~~I~---~d~v---~  218 (808)
T KOG0597|consen  161 KGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARS----------ITQLV------KSIL---KDPV---K  218 (808)
T ss_pred             cCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHH----------HHHHH------HHHh---cCCC---C
Confidence                           24557999999999999999999996422          11111      0011   1221   2


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +|......+..+....+..||..|-+..+++.+
T Consensus       219 ~p~~~S~~f~nfl~gLL~kdP~~RltW~~Ll~H  251 (808)
T KOG0597|consen  219 PPSTASSSFVNFLQGLLIKDPAQRLTWTDLLGH  251 (808)
T ss_pred             CcccccHHHHHHHHHHhhcChhhcccHHHHhcC
Confidence            455666778999999999999999999998875

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.96  E-value=3.2e-29  Score=262.67  Aligned_cols=202  Identities=22%  Similarity=0.341  Sum_probs=157.1

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhcCCC-CcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRINHA-NLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l~H~-niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|..  +++.||||.++.+          +..|..++..++|+ +|+++.+++.+ ++..++||||+++|+|.+++
T Consensus        14 g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-~~~~~lv~E~~~~g~L~~~~   92 (324)
T cd05587          14 GKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQT-MDRLYFVMEYVNGGDLMYHI   92 (324)
T ss_pred             eEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEc-CCEEEEEEcCCCCCcHHHHH
Confidence            58999987  5689999988632          45688899999765 57788887764 44799999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      ....          .+++.++..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...       
T Consensus        93 ~~~~----------~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~  159 (324)
T cd05587          93 QQVG----------KFKEPHAVFYAAEIAIGLFFLHSKG---IIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTTR  159 (324)
T ss_pred             HHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHeEEcCCCCEEEeecCcceecCCCCCcee
Confidence            7543          2889999999999999999999998   9999999999999999999999999875320       


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                      ..++.++|||||||++|||++|+.||......+   ...                 .+...  .
T Consensus       160 ~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~---~~~-----------------~i~~~--~  217 (324)
T cd05587         160 TFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDE---LFQ-----------------SIMEH--N  217 (324)
T ss_pred             eecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHH---HHH-----------------HHHcC--C
Confidence                            124568999999999999999999997543211   000                 00111  1


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCH-----HHHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNM-----AEVVF  580 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm-----~ev~~  580 (615)
                      ..++......+.+++.+|++.||.+|++.     +++.+
T Consensus       218 ~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~  256 (324)
T cd05587         218 VSYPKSLSKEAVSICKGLLTKHPAKRLGCGPTGERDIRE  256 (324)
T ss_pred             CCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence            12233344567899999999999999986     55554

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.96  E-value=1e-28  Score=253.16  Aligned_cols=208  Identities=25%  Similarity=0.352  Sum_probs=163.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      +.||+|..  ++..+|+|.+.       ..+.+|++++++++|+|++++++++... +..++|+||+++|+|..++....
T Consensus        19 g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~-~~~~~v~e~~~~~~l~~~~~~~~   97 (282)
T cd06643          19 GKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYE-NNLWILIEFCAGGAVDAVMLELE   97 (282)
T ss_pred             eEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeC-CEEEEEEEecCCCcHHHHHHhcC
Confidence            48999988  57889999874       2467899999999999999999998754 47899999999999999886533


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN----------  483 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~----------  483 (615)
                      .         .++|..+..++.|++.||.|||+.+   ++||||||+||+++.++.+|++|||++.....          
T Consensus        98 ~---------~l~~~~~~~~~~qi~~~L~~LH~~~---i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  165 (282)
T cd06643          98 R---------PLTEPQIRVVCKQTLEALNYLHENK---IIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIG  165 (282)
T ss_pred             C---------CCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCcccEEEccCCCEEEccccccccccccccccccccc
Confidence            2         3899999999999999999999998   99999999999999999999999998753210          


Q ss_pred             ------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          484 ------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       484 ------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                        ..+.++|||||||++|||++|+.|+......+.      +..           ......+.+
T Consensus       166 ~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~------~~~-----------~~~~~~~~~  228 (282)
T cd06643         166 TPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNPMRV------LLK-----------IAKSEPPTL  228 (282)
T ss_pred             cccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCHHHH------HHH-----------HhhcCCCCC
Confidence                              123479999999999999999999865332110      000           000011111


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                        ..+......+.+++..||+.||.+||++.++++.-
T Consensus       229 --~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~  263 (282)
T cd06643         229 --AQPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQHP  263 (282)
T ss_pred             --CCccccCHHHHHHHHHHccCChhhCcCHHHHhcCC
Confidence              11222335688999999999999999999988753

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.96  E-value=2.1e-29  Score=264.17  Aligned_cols=202  Identities=23%  Similarity=0.311  Sum_probs=156.2

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHH-HHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELR-ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~-~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||++..  +|+.+|+|+++..          +..|.. +++.++|+||+++++++... +..++||||+++|+|..++
T Consensus         9 g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l   87 (325)
T cd05604           9 GKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTT-EKLYFVLDFVNGGELFFHL   87 (325)
T ss_pred             eEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecC-CEEEEEEcCCCCCCHHHHH
Confidence            48999987  7899999998632          234444 46778999999999988754 4799999999999999998


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      ....          .+++.++..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+++...       
T Consensus        88 ~~~~----------~~~~~~~~~~~~qi~~al~~lH~~g---ivH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~  154 (325)
T cd05604          88 QRER----------SFPEPRARFYAAEIASALGYLHSIN---IVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTT  154 (325)
T ss_pred             HHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHeEECCCCCEEEeecCCcccCCCCCCCcc
Confidence            7543          3889999999999999999999998   9999999999999999999999999986421       


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                      ..++.++|||||||++|||++|+.||......+   ..   ...          ...  ...+ 
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~---~~---~~~----------~~~--~~~~-  215 (325)
T cd05604         155 TFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAE---MY---DNI----------LHK--PLVL-  215 (325)
T ss_pred             cccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCHHH---HH---HHH----------HcC--CccC-
Confidence                            124568999999999999999999997543111   11   110          010  0111 


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                         +......+.+++..|++.+|.+||++++.++
T Consensus       216 ---~~~~~~~~~~ll~~ll~~~p~~R~~~~~~~~  246 (325)
T cd05604         216 ---RPGASLTAWSILEELLEKDRQRRLGAKEDFL  246 (325)
T ss_pred             ---CCCCCHHHHHHHHHHhccCHHhcCCCCCCHH
Confidence               1123345789999999999999998864333

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.96  E-value=7.3e-29  Score=250.12  Aligned_cols=207  Identities=22%  Similarity=0.275  Sum_probs=161.6

Q ss_pred             ceEEEEE--ECCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRAT--IDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~--~~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||.+.  .+|+.+++|.+.         .++.+|++++++++|+||+++++++.+. +..+++|||+++|+|.+++..
T Consensus        14 g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~-~~~~~~~e~~~~~~L~~~~~~   92 (256)
T cd08221          14 GEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDD-NTLLIEMEYANGGTLYDKIVR   92 (256)
T ss_pred             ceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecC-CeEEEEEEecCCCcHHHHHHh
Confidence            3455444  478999999764         2477899999999999999999998764 478999999999999999976


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--------  483 (615)
                      ...        ..+++.++..++.|++.||.|||+.+   ++||||||+||++++++.+||+|||++.....        
T Consensus        93 ~~~--------~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~  161 (256)
T cd08221          93 QKG--------QLFEEEMVLWYLFQIVSAVSYIHKAG---ILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETV  161 (256)
T ss_pred             ccc--------cCCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCChHhEEEeCCCCEEECcCcceEEccccccccccc
Confidence            532        13899999999999999999999988   99999999999999999999999998754311        


Q ss_pred             ---------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          484 ---------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       484 ---------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                     ..+.++||||||+++|||++|+.|+......+.      ...              ....... .
T Consensus       162 ~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~------~~~--------------~~~~~~~-~  220 (256)
T cd08221         162 VGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPLNL------VVK--------------IVQGNYT-P  220 (256)
T ss_pred             CCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCHHHH------HHH--------------HHcCCCC-C
Confidence                           134579999999999999999999865331110      000              0001110 1


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      .+......+.+++..||+.+|.+||++.|+++.+
T Consensus       221 ~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~~  254 (256)
T cd08221         221 VVSVYSSELISLVHSLLQQDPEKRPTADEVLDQP  254 (256)
T ss_pred             CccccCHHHHHHHHHHcccCcccCCCHHHHhhCc
Confidence            1123345688999999999999999999998763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=5.7e-29  Score=254.64  Aligned_cols=207  Identities=26%  Similarity=0.392  Sum_probs=164.1

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      +.||++..  +++.+|+|..+       +.+.+|++++++++|+||+++++++.. +...++||||+++|+|.+++....
T Consensus        19 ~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~   97 (280)
T cd06611          19 GKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFY-ENKLWILIEFCDGGALDSIMLELE   97 (280)
T ss_pred             ceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEec-CCeEEEEeeccCCCcHHHHHHHhc
Confidence            58999987  58999999875       247789999999999999999999875 447899999999999999987643


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                      .         .+++..+..++.|++.||.|||+.+   ++|+||||+||+++.++.+||+|||++....           
T Consensus        98 ~---------~l~~~~~~~~~~ql~~~l~~lh~~~---i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~  165 (280)
T cd06611          98 R---------GLTEPQIRYVCRQMLEALNFLHSHK---VIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDTFIG  165 (280)
T ss_pred             C---------CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChhhEEECCCCCEEEccCccchhhcccccccceeec
Confidence            2         3899999999999999999999998   9999999999999999999999999874321           


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                       ...+.++||||||+++|||++|+.|+........      +.           .+.....+.+
T Consensus       166 ~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~~------~~-----------~~~~~~~~~~  228 (280)
T cd06611         166 TPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMRV------LL-----------KILKSEPPTL  228 (280)
T ss_pred             chhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCHHHH------HH-----------HHhcCCCCCc
Confidence                             1134579999999999999999999865432110      00           0111011111


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                        ..+......+.+++..||+.+|.+||++.++++.
T Consensus       229 --~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  262 (280)
T cd06611         229 --DQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLKH  262 (280)
T ss_pred             --CCcccCCHHHHHHHHHHhccChhhCcCHHHHhcC
Confidence              1122233457899999999999999999999886

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.96  E-value=3.6e-29  Score=259.19  Aligned_cols=220  Identities=21%  Similarity=0.333  Sum_probs=163.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||+|..  +++.||+|.++        ..+.+|+.++++++|+||+++++++... +..++|+||++ ++|.+++...
T Consensus        20 g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~-~~~~lv~e~~~-~~l~~~l~~~   97 (301)
T cd07873          20 ATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTE-KSLTLVFEYLD-KDLKQYLDDC   97 (301)
T ss_pred             EEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecC-CeEEEEEeccc-cCHHHHHHhc
Confidence            48999987  57899999875        2466899999999999999999998754 47999999997 6999998764


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                      ..         .+++..+..++.|++.||+|||+.+   ++||||||+||+++.++.+||+|||++....          
T Consensus        98 ~~---------~~~~~~~~~~~~qi~~aL~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  165 (301)
T cd07873          98 GN---------SINMHNVKLFLFQLLRGLNYCHRRK---VLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEV  165 (301)
T ss_pred             CC---------CCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCHHHEEECCCCcEEECcCcchhccCCCCCcccccc
Confidence            32         3789999999999999999999998   9999999999999999999999999885421          


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc-------
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM-------  541 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------  541 (615)
                                    ...+.++|||||||++|||++|+.||......+   .+..+...+....  ......++       
T Consensus       166 ~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  240 (301)
T cd07873         166 VTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEE---QLHFIFRILGTPT--EETWPGILSNEEFKS  240 (301)
T ss_pred             eeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHHcCCCC--hhhchhhhccccccc
Confidence                          113457899999999999999999997544211   1111111110000  00001110       


Q ss_pred             --CCcCCCCC----ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 --DPNLESFY----PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 --dp~l~~~~----~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                        -|......    .......+.+|+.+|++.||.+|||+.|++++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~h  286 (301)
T cd07873         241 YNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMKH  286 (301)
T ss_pred             cccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence              01110000    11223357899999999999999999999874

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.96  E-value=4.1e-29  Score=258.51  Aligned_cols=205  Identities=20%  Similarity=0.328  Sum_probs=163.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      +.||++..  +|+.||+|.+.       +.+.+|+.+++.++|+||+++++++... +..++||||+++|+|.+++... 
T Consensus        33 g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~~-  110 (297)
T cd06656          33 GTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVG-DELWVVMEYLAGGSLTDVVTET-  110 (297)
T ss_pred             eEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecC-CEEEEeecccCCCCHHHHHHhC-
Confidence            58999986  78999999885       3467899999999999999999998754 4799999999999999998642 


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                                .+++.++..++.|++.||.|||+.+   ++||||||+||+++.++.+||+|||++....           
T Consensus       111 ----------~~~~~~~~~~~~~l~~~L~~LH~~~---i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~  177 (297)
T cd06656         111 ----------CMDEGQIAAVCRECLQALDFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVG  177 (297)
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEECcCccceEccCCccCcCcccC
Confidence                      2789999999999999999999987   9999999999999999999999999875321           


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  ...+.++|||||||++|||++|+.||..........                   ............+
T Consensus       178 ~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~-------------------~~~~~~~~~~~~~  238 (297)
T cd06656         178 TPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALY-------------------LIATNGTPELQNP  238 (297)
T ss_pred             CccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchhee-------------------eeccCCCCCCCCc
Confidence                        113468999999999999999999996543211100                   0000000001122


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ......+.+++.+||+.+|++||++.|+++.
T Consensus       239 ~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  269 (297)
T cd06656         239 ERLSAVFRDFLNRCLEMDVDRRGSAKELLQH  269 (297)
T ss_pred             cccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            2334457899999999999999999999984

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.96  E-value=2.2e-29  Score=269.41  Aligned_cols=206  Identities=20%  Similarity=0.269  Sum_probs=157.7

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||++..  +|+.||||.+.+          .+.+|+++|.+++|+||+++++.+.+ ++..++||||+++|+|.+++.
T Consensus        15 g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~-~~~~~lv~E~~~~g~L~~~i~   93 (376)
T cd05598          15 GEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQD-KDNLYFVMDYIPGGDMMSLLI   93 (376)
T ss_pred             eEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEc-CCEEEEEEeCCCCCcHHHHHH
Confidence            58999987  689999999853          25679999999999999999999875 458999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC---------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA---------  481 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~---------  481 (615)
                      ...          .+++.....++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++...         
T Consensus        94 ~~~----------~~~~~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~~~~  160 (376)
T cd05598          94 RLG----------IFEEDLARFYIAELTCAIESVHKMG---FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYY  160 (376)
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCCHHHEEECCCCCEEEEeCCCCcccccccccccc
Confidence            643          2788888999999999999999998   999999999999999999999999986311         


Q ss_pred             ---------------------------------------------------------CCCCCCcccchhHHHHHHHHHcC
Q 047629          482 ---------------------------------------------------------TNDVMPKFDVFAFGVVLLELLSG  504 (615)
Q Consensus       482 ---------------------------------------------------------~~~~~~k~DV~SfGvvl~ElltG  504 (615)
                                                                               ...++.++|||||||++|||++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G  240 (376)
T cd05598         161 QKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVG  240 (376)
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceeeehhhC
Confidence                                                                     01245689999999999999999


Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCC---CHHHHHHH
Q 047629          505 KKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRP---NMAEVVFN  581 (615)
Q Consensus       505 ~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RP---sm~ev~~~  581 (615)
                      +.||......+..      ..           +..+ ...+...........+.+++.+|+ .+|.+|+   ++.|++++
T Consensus       241 ~~Pf~~~~~~~~~------~~-----------i~~~-~~~~~~~~~~~~s~~~~~li~~l~-~~p~~R~~~~t~~ell~h  301 (376)
T cd05598         241 QPPFLADTPAETQ------LK-----------VINW-ETTLHIPSQAKLSREASDLILRLC-CGAEDRLGKNGADEIKAH  301 (376)
T ss_pred             CCCCCCCCHHHHH------HH-----------Hhcc-CccccCCCCCCCCHHHHHHHHHHh-cCHhhcCCCCCHHHHhCC
Confidence            9999764421110      00           0000 000100011122334566777765 4999999   88998876

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.96  E-value=8.6e-29  Score=249.57  Aligned_cols=206  Identities=24%  Similarity=0.354  Sum_probs=163.4

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.+|++..  +|+.+|+|++.         .++.+|+.++++++|+||+++.+++.+ ++..++|+||+++++|.+++..
T Consensus        14 g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~lv~e~~~~~~l~~~~~~   92 (256)
T cd08218          14 GKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEE-NGNLYIVMDYCEGGDLYKKINA   92 (256)
T ss_pred             eEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecC-CCeEEEEEecCCCCcHHHHHHh
Confidence            36888776  78999999874         247789999999999999999998765 4579999999999999999975


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------  482 (615)
                      ....        .+++.+++.++.|++.||.|||+++   ++|+||+|+||+++.++.++++|||++....         
T Consensus        93 ~~~~--------~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~  161 (256)
T cd08218          93 QRGV--------LFPEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELARTC  161 (256)
T ss_pred             ccCC--------CCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCCCEEEeeccceeecCcchhhhhhc
Confidence            4321        3789999999999999999999988   9999999999999999999999999885431         


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                    ...+.++|||||||+++||++|+.|+......+      .+..          .+... .+    .
T Consensus       162 ~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~------~~~~----------~~~~~-~~----~  220 (256)
T cd08218         162 IGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNMKN------LVLK----------IIRGS-YP----P  220 (256)
T ss_pred             cCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCCHHH------HHHH----------HhcCC-CC----C
Confidence                          123568999999999999999999986432110      0100          11111 11    1


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+......+.+++.+||+.+|.+||+|+||++.
T Consensus       221 ~~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~~  253 (256)
T cd08218         221 VSSHYSYDLRNLVSQLFKRNPRDRPSVNSILEK  253 (256)
T ss_pred             CcccCCHHHHHHHHHHhhCChhhCcCHHHHhhC
Confidence            223344568999999999999999999999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.96  E-value=7.5e-29  Score=253.57  Aligned_cols=203  Identities=25%  Similarity=0.395  Sum_probs=162.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      +.||+|..  +++.+|+|...        ..+.+|++++.+++|+||+++++++.+. ...++||||+++|+|.+++...
T Consensus        18 ~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~l~~~i~~~   96 (277)
T cd06641          18 GEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKD-TKLWIIMEYLGGGSALDLLEPG   96 (277)
T ss_pred             eEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeC-CeEEEEEEeCCCCcHHHHHhcC
Confidence            58999986  67899999864        2477899999999999999999998754 4799999999999999998642


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                                 .+++..+..++.|++.|+.|||+.+   ++|+||||+||+++.++.++++|||++....          
T Consensus        97 -----------~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~  162 (277)
T cd06641          97 -----------PLDETQIATILREILKGLDYLHSEK---KIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFV  162 (277)
T ss_pred             -----------CCCHHHHHHHHHHHHHHHHHHccCC---eecCCCCHHhEEECCCCCEEEeecccceecccchhhhcccc
Confidence                       2889999999999999999999988   9999999999999999999999999875321          


Q ss_pred             -------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          483 -------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       483 -------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                   ...+.++|||||||++|||++|+.|+.......   .   ..           .+...-.+.+    
T Consensus       163 ~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~---~---~~-----------~~~~~~~~~~----  221 (277)
T cd06641         163 GTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPMK---V---LF-----------LIPKNNPPTL----  221 (277)
T ss_pred             CCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchHH---H---HH-----------HHhcCCCCCC----
Confidence                         113457999999999999999999986432110   0   00           0111111122    


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +......+.+++.+||+.+|.+||++.|++++
T Consensus       222 ~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~  253 (277)
T cd06641         222 EGNYSKPLKEFVEACLNKEPSFRPTAKELLKH  253 (277)
T ss_pred             CcccCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence            22334557899999999999999999999995

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=5.8e-30  Score=242.49  Aligned_cols=206  Identities=27%  Similarity=0.375  Sum_probs=166.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||.|..  ++-.||+|++.+          ++.+|++|.+.++||||.+++||+.+.. ..||++||.++|+|...|.
T Consensus        36 G~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~-riyLilEya~~gel~k~L~  114 (281)
T KOG0580|consen   36 GNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSK-RIYLILEYAPRGELYKDLQ  114 (281)
T ss_pred             ccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccc-eeEEEEEecCCchHHHHHH
Confidence            48999998  578899999853          4678999999999999999999998755 7999999999999999998


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      .....        .++......+..|+|.||.|+|..+   ++||||||+|+|++..+..|++|||.+....        
T Consensus       115 ~~~~~--------~f~e~~~a~Yi~q~A~Al~y~h~k~---VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~~kR~tlc  183 (281)
T KOG0580|consen  115 EGRMK--------RFDEQRAATYIKQLANALLYCHLKR---VIHRDIKPENLLLGSAGELKIADFGWSVHAPSNKRKTLC  183 (281)
T ss_pred             hcccc--------cccccchhHHHHHHHHHHHHhccCC---cccCCCCHHHhccCCCCCeeccCCCceeecCCCCceeee
Confidence            54432        2777778889999999999999987   9999999999999999999999999874431        


Q ss_pred             -------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          483 -------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       483 -------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                   .....++|+|++||+.||++.|.+||.....++.   .+.+..               +|    -.+
T Consensus       184 gt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~et---YkrI~k---------------~~----~~~  241 (281)
T KOG0580|consen  184 GTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHSET---YKRIRK---------------VD----LKF  241 (281)
T ss_pred             cccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhHHH---HHHHHH---------------cc----ccC
Confidence                         1245689999999999999999999986542221   111110               11    122


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      |........+++..|+..+|.+|.+..|++..-
T Consensus       242 p~~is~~a~dlI~~ll~~~p~~r~~l~~v~~hp  274 (281)
T KOG0580|consen  242 PSTISGGAADLISRLLVKNPIERLALTEVMDHP  274 (281)
T ss_pred             CcccChhHHHHHHHHhccCccccccHHHHhhhH
Confidence            333444578999999999999999999998763

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.96  E-value=4e-29  Score=268.00  Aligned_cols=156  Identities=22%  Similarity=0.326  Sum_probs=135.1

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +++.+|+|.+..          .+.+|++++++++|+||+++++.+.+. ...++||||+++|+|.+++.
T Consensus        15 g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~-~~~~lv~E~~~gg~L~~~l~   93 (382)
T cd05625          15 GEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDK-DNLYFVMDYIPGGDMMSLLI   93 (382)
T ss_pred             EEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeC-CEEEEEEeCCCCCcHHHHHH
Confidence            58999987  688999999863          356799999999999999999998754 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC---------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA---------  481 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~---------  481 (615)
                      ...          .+++.....++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++..         
T Consensus        94 ~~~----------~~~e~~~~~~~~qi~~al~~lH~~~---ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~~~~  160 (382)
T cd05625          94 RMG----------IFPEDLARFYIAELTCAVESVHKMG---FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYY  160 (382)
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEEeECCCCcccccccccccc
Confidence            643          2788889999999999999999998   999999999999999999999999986311         


Q ss_pred             -------------------------------------------------------------CCCCCCcccchhHHHHHHH
Q 047629          482 -------------------------------------------------------------TNDVMPKFDVFAFGVVLLE  500 (615)
Q Consensus       482 -------------------------------------------------------------~~~~~~k~DV~SfGvvl~E  500 (615)
                                                                                   ...++.++|||||||++||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~e  240 (382)
T cd05625         161 QSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYE  240 (382)
T ss_pred             ccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechHHHHH
Confidence                                                                         0124568999999999999


Q ss_pred             HHcCCCCCCCCC
Q 047629          501 LLSGKKATRTTE  512 (615)
Q Consensus       501 lltG~~p~~~~~  512 (615)
                      |++|+.||....
T Consensus       241 lltG~~Pf~~~~  252 (382)
T cd05625         241 MLVGQPPFLAQT  252 (382)
T ss_pred             HHhCCCCCCCCC
Confidence            999999997543

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.96  E-value=6.4e-29  Score=255.56  Aligned_cols=209  Identities=21%  Similarity=0.285  Sum_probs=163.1

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +++.+|||.+..          .+.+|+.++++++|+|++++.+.+.+. ...++||||+++|+|.+++.
T Consensus        14 g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~-~~~~lv~e~~~g~~L~~~l~   92 (285)
T cd05630          14 GEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETK-DALCLVLTLMNGGDLKFHIY   92 (285)
T ss_pred             eEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecC-CEEEEEEEecCCCcHHHHHH
Confidence            48999887  688999998752          245799999999999999999988754 47899999999999999986


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      .....        .+++.++..++.|++.||.|||+.+   |+||||||+||+++.++.++|+|||++....        
T Consensus        93 ~~~~~--------~l~~~~~~~~~~qi~~~l~~lH~~~---iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~  161 (285)
T cd05630          93 HMGEA--------GFEEGRAVFYAAEICCGLEDLHQER---IVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGR  161 (285)
T ss_pred             Hhccc--------CCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCCCHHHEEECCCCCEEEeeccceeecCCCccccCC
Confidence            53321        3889999999999999999999987   9999999999999999999999999885421        


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                    ..++.++||||||+++|||++|+.||.........   .......       ....        ..
T Consensus       162 ~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~---~~~~~~~-------~~~~--------~~  223 (285)
T cd05630         162 VGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKR---EEVERLV-------KEVQ--------EE  223 (285)
T ss_pred             CCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccchH---HHHHhhh-------hhhh--------hh
Confidence                          12456899999999999999999999764322111   0011000       0000        11


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCC-----HHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPN-----MAEVVFN  581 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPs-----m~ev~~~  581 (615)
                      ++......+.+|+..||+.||++|||     +.|++++
T Consensus       224 ~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~h  261 (285)
T cd05630         224 YSEKFSPDARSLCKMLLCKDPKERLGCQGGGAREVKEH  261 (285)
T ss_pred             cCccCCHHHHHHHHHHhhcCHHHccCCCCCchHHHHcC
Confidence            12223345789999999999999999     8888875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.96  E-value=2.9e-29  Score=244.24  Aligned_cols=194  Identities=23%  Similarity=0.357  Sum_probs=158.5

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.|...+.  +|..+|+|++++          ...+|..+|+.+.||.+++|.+-+.+.+ .+++||||+++|.|..+|+
T Consensus        58 GrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~-~lymvmeyv~GGElFS~Lr  136 (355)
T KOG0616|consen   58 GRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNS-NLYMVMEYVPGGELFSYLR  136 (355)
T ss_pred             ceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCC-eEEEEEeccCCccHHHHHH
Confidence            46766665  789999999974          2457999999999999999999887654 8999999999999999999


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------  483 (615)
                      +.+.          ++.....-+|.+|+.||+|||+..   |++|||||+|||||.+|.+||+|||+|+...+       
T Consensus       137 k~~r----------F~e~~arFYAAeivlAleylH~~~---iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~rT~TlCG  203 (355)
T KOG0616|consen  137 KSGR----------FSEPHARFYAAEIVLALEYLHSLD---IIYRDLKPENLLLDQNGHIKITDFGFAKRVSGRTWTLCG  203 (355)
T ss_pred             hcCC----------CCchhHHHHHHHHHHHHHHHHhcC---eeeccCChHHeeeccCCcEEEEeccceEEecCcEEEecC
Confidence            8664          889999999999999999999998   99999999999999999999999999976532       


Q ss_pred             -------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          484 -------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       484 -------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                   ++..++|.|||||++|||+.|.+||.....   ...                 ..+++...+  .+|
T Consensus       204 TPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~---~~i-----------------Y~KI~~~~v--~fP  261 (355)
T KOG0616|consen  204 TPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNP---IQI-----------------YEKILEGKV--KFP  261 (355)
T ss_pred             CccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCCh---HHH-----------------HHHHHhCcc--cCC
Confidence                         245689999999999999999999976442   111                 111222222  245


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCC
Q 047629          551 IDGALSLATLARACTMDKSLSR  572 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~R  572 (615)
                      .-....+.+|++..++.|-.+|
T Consensus       262 ~~fs~~~kdLl~~LL~vD~t~R  283 (355)
T KOG0616|consen  262 SYFSSDAKDLLKKLLQVDLTKR  283 (355)
T ss_pred             cccCHHHHHHHHHHHhhhhHhh
Confidence            5555567888888898888888

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.96  E-value=4.6e-29  Score=261.94  Aligned_cols=210  Identities=18%  Similarity=0.294  Sum_probs=160.7

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||++..  +++.+|+|.++..          +..|+.++.++ +|+||+++++++.+. ...++||||+++|+|.+++
T Consensus         9 g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~~   87 (327)
T cd05617           9 AKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTT-SRLFLVIEYVNGGDLMFHM   87 (327)
T ss_pred             eEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeC-CEEEEEEeCCCCCcHHHHH
Confidence            48999987  6789999999742          45788888888 699999999987654 4799999999999999988


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC--------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA--------  481 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~--------  481 (615)
                      ....          .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++..        
T Consensus        88 ~~~~----------~l~~~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~  154 (327)
T cd05617          88 QRQR----------KLPEEHARFYAAEICIALNFLHERG---IIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTS  154 (327)
T ss_pred             HHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEEeCCCCEEEeccccceeccCCCCcee
Confidence            6543          2899999999999999999999998   999999999999999999999999988632        


Q ss_pred             ---------------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          482 ---------------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       482 ---------------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                     ...++.++|||||||++|||++|+.||..............+...          +   ....  
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~----------~---~~~~--  219 (327)
T cd05617         155 TFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQV----------I---LEKP--  219 (327)
T ss_pred             cccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHH----------H---HhCC--
Confidence                           112456899999999999999999999643321111001111110          0   0111  


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCH------HHHHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNM------AEVVFN  581 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm------~ev~~~  581 (615)
                      ...|......+.+++.+|++.||.+|+++      .++..+
T Consensus       220 ~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~h  260 (327)
T cd05617         220 IRIPRFLSVKASHVLKGFLNKDPKERLGCQPQTGFSDIKSH  260 (327)
T ss_pred             CCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHHcC
Confidence            11233334557899999999999999984      566553

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.96  E-value=1.3e-28  Score=253.17  Aligned_cols=217  Identities=24%  Similarity=0.331  Sum_probs=165.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCC-CcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQ-GNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~-~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||++..  +++.+|+|.+.        ..+.+|++++++++|+||+++++++.+.+ +..++||||+++|+|.+++..
T Consensus        15 ~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~   94 (287)
T cd06621          15 GSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKK   94 (287)
T ss_pred             eEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEEEecCCCCHHHHHHH
Confidence            58999998  67999999875        24778999999999999999999886433 358999999999999998764


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------  482 (615)
                      .....      ..+++..+..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++....         
T Consensus        95 ~~~~~------~~l~~~~~~~i~~~i~~~L~~lH~~~---i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~  165 (287)
T cd06621          95 VKKRG------GRIGEKVLGKIAESVLKGLSYLHSRK---IIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLAGTFTG  165 (287)
T ss_pred             HHhcC------CCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEecCCeEEEeeccccccccccccccccC
Confidence            22111      13889999999999999999999998   9999999999999999999999999975321         


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCC--hhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENG--KTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                  ..++.++||||||+++|||++|+.|+......  ....+..+              +...-.+.+...
T Consensus       166 ~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~  231 (287)
T cd06621         166 TSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSY--------------IVNMPNPELKDE  231 (287)
T ss_pred             CccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHH--------------HhcCCchhhccC
Confidence                        12456899999999999999999998754321  11111110              111011111111


Q ss_pred             CC--hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          549 YP--IDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       549 ~~--~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      ..  ......+.+++.+||+.+|.+||||.|+++.-
T Consensus       232 ~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~~~  267 (287)
T cd06621         232 PGNGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLEHP  267 (287)
T ss_pred             CCCCCchHHHHHHHHHHHcCCCcccCCCHHHHHhCc
Confidence            11  12345688999999999999999999999853

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.96  E-value=3.8e-29  Score=262.27  Aligned_cols=202  Identities=23%  Similarity=0.289  Sum_probs=155.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHH-HHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEEL-RILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei-~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||++..  +++.+|+|.+...          +..|. .+++.++|+||+++++++... +..++||||+++|+|.+++
T Consensus         9 g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~~   87 (325)
T cd05602           9 GKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTA-DKLYFVLDYINGGELFYHL   87 (325)
T ss_pred             eEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcC-CeEEEEEeCCCCCcHHHHH
Confidence            48999987  6788999998632          22333 346778999999999988754 4799999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      ....          .+.+.....++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...       
T Consensus        88 ~~~~----------~~~~~~~~~~~~qi~~~L~~lH~~g---iiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~~~~  154 (325)
T cd05602          88 QRER----------CFLEPRARFYAAEIASALGYLHSLN---IVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTS  154 (325)
T ss_pred             HhcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHeEECCCCCEEEccCCCCcccccCCCCcc
Confidence            7643          2778888899999999999999998   9999999999999999999999999986421       


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                      ..++.++|||||||++|||++|+.||......   ..+..+             ...    .+ 
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~---~~~~~i-------------~~~----~~-  213 (325)
T cd05602         155 TFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTA---EMYDNI-------------LNK----PL-  213 (325)
T ss_pred             cccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCHH---HHHHHH-------------HhC----Cc-
Confidence                            12456899999999999999999999754321   111100             000    00 


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                       ..+.+....+.+++..|++.||.+||++.+.+.
T Consensus       214 -~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~  246 (325)
T cd05602         214 -QLKPNITNSARHLLEGLLQKDRTKRLGAKDDFM  246 (325)
T ss_pred             -CCCCCCCHHHHHHHHHHcccCHHHCCCCCCCHH
Confidence             112233445789999999999999999875443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.5e-28  Score=248.31  Aligned_cols=208  Identities=25%  Similarity=0.365  Sum_probs=163.3

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      +.||++..  +++.+|+|.+.       +.+.+|++++++++|+||+++++++.+. +..+++|||+++++|.+++....
T Consensus        17 ~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~-~~~~l~~e~~~~~~l~~~~~~~~   95 (262)
T cd06613          17 GDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRR-DKLWIVMEYCGGGSLQDIYQVTR   95 (262)
T ss_pred             eEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeC-CEEEEEEeCCCCCcHHHHHHhhc
Confidence            48999987  57889999875       3477899999999999999999988754 47999999999999999987652


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                      .         .+++.++..++.|++.||.|||+++   ++|+||||+||++++++.+||+|||++....           
T Consensus        96 ~---------~l~~~~~~~~~~ql~~~l~~lh~~~---i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~  163 (262)
T cd06613          96 G---------PLSELQIAYVCRETLKGLAYLHETG---KIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKSFIG  163 (262)
T ss_pred             c---------CCCHHHHHHHHHHHHHHHHHHHhCC---ceecCCChhhEEECCCCCEEECccccchhhhhhhhccccccC
Confidence            2         3889999999999999999999998   9999999999999999999999999874321           


Q ss_pred             ------------C---CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ------------N---DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ------------~---~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                  .   ..+.++||||||+++|||++|+.|+..........      .         ......-.+.+  
T Consensus       164 ~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~~~------~---------~~~~~~~~~~~--  226 (262)
T cd06613         164 TPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRALF------L---------ISKSNFPPPKL--  226 (262)
T ss_pred             CccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHH------H---------HHhccCCCccc--
Confidence                        1   23457899999999999999999987543211110      0         00000011111  


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                      ..+......+.+++.+||+.+|.+||++.||+.
T Consensus       227 ~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  259 (262)
T cd06613         227 KDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQ  259 (262)
T ss_pred             cchhhhhHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            112233456899999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.96  E-value=8.9e-29  Score=254.42  Aligned_cols=209  Identities=19%  Similarity=0.260  Sum_probs=161.9

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.+|+|.++.          .+.+|+++|++++|+|++++.+++... ...+++|||+++|+|.+++.
T Consensus        14 g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~   92 (285)
T cd05632          14 GEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETK-DALCLVLTIMNGGDLKFHIY   92 (285)
T ss_pred             eEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecC-CEEEEEEEeccCccHHHHHH
Confidence            58999988  689999998752          256799999999999999999887654 47899999999999999986


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      .....        .+++..+..++.|++.||.|||+.+   |+||||||+||++++++.+||+|||++....        
T Consensus        93 ~~~~~--------~~~~~~~~~~~~ql~~~l~~lH~~~---iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~  161 (285)
T cd05632          93 NMGNP--------GFEEERALFYAAEILCGLEDLHREN---TVYRDLKPENILLDDYGHIRISDLGLAVKIPEGESIRGR  161 (285)
T ss_pred             HhcCC--------CCCHHHHHHHHHHHHHHHHHHHhCC---eeecCCCHHHEEECCCCCEEEecCCcceecCCCCcccCC
Confidence            54321        3899999999999999999999998   9999999999999999999999999884321        


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                    ..++.++|+||||+++|||++|+.||....+......   +.          ..+.+. .    ..
T Consensus       162 ~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~~~~---~~----------~~~~~~-~----~~  223 (285)
T cd05632         162 VGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREE---VD----------RRVLET-E----EV  223 (285)
T ss_pred             CCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHH---HH----------Hhhhcc-c----cc
Confidence                          1245689999999999999999999975432111100   00          011110 0    11


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCC-----HHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPN-----MAEVVFN  581 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPs-----m~ev~~~  581 (615)
                      ++......+.+|+..|++.||++||+     ++|++..
T Consensus       224 ~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~  261 (285)
T cd05632         224 YSAKFSEEAKSICKMLLTKDPKQRLGCQEEGAGEVKRH  261 (285)
T ss_pred             cCccCCHHHHHHHHHHccCCHhHcCCCcccChHHHHcC
Confidence            22233445789999999999999999     5666654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.96  E-value=1.1e-28  Score=250.35  Aligned_cols=205  Identities=22%  Similarity=0.304  Sum_probs=159.7

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------------HHHHHHHHHHHhcCCCCcccEEEEEEcCC-CcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK------------EDVTEELRILQRINHANLVKLMGVSSDSQ-GNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~-~~~~lV~E~~~~GsL~~  407 (615)
                      +.||+|..  +|+.||||.++            +.+.+|+.++++++|+||+++++++.+.. ...++++||+++|+|.+
T Consensus        16 g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~L~~   95 (265)
T cd06652          16 GRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTLSIFMEHMPGGSIKD   95 (265)
T ss_pred             eEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceEEEEEEecCCCcHHH
Confidence            47999987  68999999874            13567999999999999999999876543 34789999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++....          .+++....+++.|++.||+|||+++   ++|+||||+||+++.++.+||+|||+++...     
T Consensus        96 ~l~~~~----------~~~~~~~~~~~~~l~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~  162 (265)
T cd06652          96 QLKSYG----------ALTENVTRKYTRQILEGVSYLHSNM---IVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLS  162 (265)
T ss_pred             HHHHcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEecCCCCEEECcCcccccccccccc
Confidence            997543          2788889999999999999999998   9999999999999999999999999885321     


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                           ...+.++||||||+++|||++|+.|+.......      .+.          .......
T Consensus       163 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~------~~~----------~~~~~~~  226 (265)
T cd06652         163 GTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEAMA------AIF----------KIATQPT  226 (265)
T ss_pred             ccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccchHH------HHH----------HHhcCCC
Confidence                                 113467999999999999999999986432110      000          0001111


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .    ...+......+.+++.+|+. +|++||+++||++.
T Consensus       227 ~----~~~~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~~  261 (265)
T cd06652         227 N----PVLPPHVSDHCRDFLKRIFV-EAKLRPSADELLRH  261 (265)
T ss_pred             C----CCCchhhCHHHHHHHHHHhc-ChhhCCCHHHHhcC
Confidence            1    22344444567788899985 99999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.96  E-value=6.3e-29  Score=254.56  Aligned_cols=207  Identities=20%  Similarity=0.373  Sum_probs=160.5

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhc-CCCCcccEEEEEEcC-----CCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGKVLAVKKIK------EDVTEELRILQRI-NHANLVKLMGVSSDS-----QGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~-----~~~~~lV~E~~~~GsL~~~  408 (615)
                      +.||+|..  +++.+|+|.+.      .++..|+.++.++ +|+||+++++++...     ....+++|||+++|+|.++
T Consensus        30 ~~v~~~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~  109 (282)
T cd06636          30 GQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDL  109 (282)
T ss_pred             eEEEEEEEcCCCcEEEEEEEecChHHHHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCCCCEEEEEEEeCCCCcHHHH
Confidence            48999997  68899999874      2467789999998 799999999987532     2357999999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      +......        .+++..+..++.|++.||.|||+++   ++||||||+||++++++.+||+|||++....      
T Consensus       110 ~~~~~~~--------~~~~~~~~~~~~qi~~al~~LH~~~---ivH~dl~~~nili~~~~~~~l~dfg~~~~~~~~~~~~  178 (282)
T cd06636         110 VKNTKGN--------ALKEDWIAYICREILRGLAHLHAHK---VIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRR  178 (282)
T ss_pred             HHHccCC--------CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEeeCcchhhhhccccCC
Confidence            9754321        3788899999999999999999998   9999999999999999999999999874321      


Q ss_pred             ----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhh
Q 047629          483 ----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNW  540 (615)
Q Consensus       483 ----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  540 (615)
                                            ..++.++|||||||++|||++|+.|+.........      .           .+...
T Consensus       179 ~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~~------~-----------~~~~~  241 (282)
T cd06636         179 NTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRAL------F-----------LIPRN  241 (282)
T ss_pred             CcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHHhhh------h-----------hHhhC
Confidence                                  11345799999999999999999998653321100      0           00111


Q ss_pred             cCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          541 MDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       541 ~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                      ..+.+.   .......+.+++.+||+.||.+||++.|+++
T Consensus       242 ~~~~~~---~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~  278 (282)
T cd06636         242 PPPKLK---SKKWSKKFIDFIEGCLVKNYLSRPSTEQLLK  278 (282)
T ss_pred             CCCCCc---ccccCHHHHHHHHHHhCCChhhCcCHHHHhc
Confidence            111111   1123346899999999999999999999975

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>PTZ00284 protein kinase; Provisional

Probab=99.96  E-value=3.2e-29  Score=275.89  Aligned_cols=238  Identities=19%  Similarity=0.246  Sum_probs=165.1

Q ss_pred             HHccccccccccc----ceEEEEEE--CCeEEEEEEccH------HHHHHHHHHHhcCCC------CcccEEEEEEcCCC
Q 047629          330 ESTMNLSEHYSIG----KSVYRATI--DGKVLAVKKIKE------DVTEELRILQRINHA------NLVKLMGVSSDSQG  391 (615)
Q Consensus       330 ~at~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~------~~~~Ei~~l~~l~H~------niv~l~g~~~~~~~  391 (615)
                      ..+.+|.....+|    |.||++..  .++.||||+++.      +...|++++.+++|.      +++++++++....+
T Consensus       126 ~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~~  205 (467)
T PTZ00284        126 VSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETG  205 (467)
T ss_pred             cCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcCCc
Confidence            3445565555565    58999987  678999999852      456688888887654      58889998876555


Q ss_pred             cEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhC-CCCCeEecCCCCCceeeCCCC--
Q 047629          392 NRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH-AQPSIVHRDIRTNNIQLDSRF--  468 (615)
Q Consensus       392 ~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-~~~~ivHrDlk~~NILld~~~--  468 (615)
                      ..++|||++ +++|.+++....          .+++..+..|+.||+.||+|||++ +   |+||||||+|||++.++  
T Consensus       206 ~~~iv~~~~-g~~l~~~l~~~~----------~l~~~~~~~i~~qi~~aL~yLH~~~g---IiHrDlKP~NILl~~~~~~  271 (467)
T PTZ00284        206 HMCIVMPKY-GPCLLDWIMKHG----------PFSHRHLAQIIFQTGVALDYFHTELH---LMHTDLKPENILMETSDTV  271 (467)
T ss_pred             eEEEEEecc-CCCHHHHHHHcC----------CCCHHHHHHHHHHHHHHHHHHHhcCC---eecCCCCHHHEEEecCCcc
Confidence            789999988 678999987543          389999999999999999999974 6   99999999999998765  


Q ss_pred             --------------cEEEeecCCCCCCC--------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCC
Q 047629          469 --------------KAKIANFSLAAPAT--------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENG  514 (615)
Q Consensus       469 --------------~~kl~DFGla~~~~--------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~  514 (615)
                                    .+||+|||++....                    ..++.++|||||||++|||++|+.||......
T Consensus       272 ~~~~~~~~~~~~~~~vkl~DfG~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~  351 (467)
T PTZ00284        272 VDPVTNRALPPDPCRVRICDLGGCCDERHSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTHDNL  351 (467)
T ss_pred             cccccccccCCCCceEEECCCCccccCccccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH
Confidence                          49999999864321                    12566899999999999999999999765432


Q ss_pred             hhHHHHHHHHHHHhHHHHH---HHHHhhhc------CCcCC--------CCCC---hHHHHHHHHHHHHhhhcCCCCCCC
Q 047629          515 KTAVLWKEIREVLKVEEKR---EERLRNWM------DPNLE--------SFYP---IDGALSLATLARACTMDKSLSRPN  574 (615)
Q Consensus       515 ~~~~l~~~~~~~~~~~~~~---~~~~~~~~------dp~l~--------~~~~---~~~~~~l~~l~~~C~~~dP~~RPs  574 (615)
                      +...........+..+...   .....++.      ++...        ...+   ......+.+|+..|++.||++|||
T Consensus       352 ~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~t  431 (467)
T PTZ00284        352 EHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLN  431 (467)
T ss_pred             HHHHHHHHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCC
Confidence            2222111110000000000   00000000      00000        0000   011245789999999999999999


Q ss_pred             HHHHHHH
Q 047629          575 MAEVVFN  581 (615)
Q Consensus       575 m~ev~~~  581 (615)
                      ++|++++
T Consensus       432 a~e~L~H  438 (467)
T PTZ00284        432 ARQMTTH  438 (467)
T ss_pred             HHHHhcC
Confidence            9999985

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.96  E-value=7.1e-29  Score=252.25  Aligned_cols=211  Identities=23%  Similarity=0.368  Sum_probs=160.5

Q ss_pred             ceEEEEEEC---CeEEEEEEcc-----------------HHHHHHHHHHHh-cCCCCcccEEEEEEcCCCcEEEEEeecC
Q 047629          343 KSVYRATID---GKVLAVKKIK-----------------EDVTEELRILQR-INHANLVKLMGVSSDSQGNRFLVYEYAE  401 (615)
Q Consensus       343 ~~Vy~~~~~---g~~vAvK~~~-----------------~~~~~Ei~~l~~-l~H~niv~l~g~~~~~~~~~~lV~E~~~  401 (615)
                      +.||+|...   ++.+|+|.+.                 .++..|+.++.+ ++|+||+++++++.+ ++..+++|||++
T Consensus        14 ~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~-~~~~~lv~e~~~   92 (269)
T cd08528          14 GCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE-NDRLYIVMDLIE   92 (269)
T ss_pred             ceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc-CCeEEEEEecCC
Confidence            489999983   5889999764                 125678888875 799999999999875 458999999999


Q ss_pred             CCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHh-CCCCCeEecCCCCCceeeCCCCcEEEeecCCCCC
Q 047629          402 NGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE-HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAP  480 (615)
Q Consensus       402 ~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  480 (615)
                      +++|.+++.......      ..+++..+++++.|++.||.|||+ .+   ++|+||||+||+++.++.+||+|||++..
T Consensus        93 ~~~l~~~l~~~~~~~------~~~~~~~~~~~~~~l~~~l~~lh~~~~---i~H~dl~~~nil~~~~~~~~l~dfg~~~~  163 (269)
T cd08528          93 GAPLGEHFNSLKEKK------QRFTEERIWNIFVQMVLALRYLHKEKR---IVHRDLTPNNIMLGEDDKVTITDFGLAKQ  163 (269)
T ss_pred             CCcHHHHHHHHHhcc------CCCCHHHHHHHHHHHHHHHHHhccCCc---eeecCCCHHHEEECCCCcEEEecccceee
Confidence            999999885422110      138899999999999999999996 44   99999999999999999999999998854


Q ss_pred             CC----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHh
Q 047629          481 AT----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLR  538 (615)
Q Consensus       481 ~~----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  538 (615)
                      ..                      ..++.++||||||+++|||++|+.|+.......   ..   ..          ...
T Consensus       164 ~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~~~---~~---~~----------~~~  227 (269)
T cd08528         164 KQPESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNMLS---LA---TK----------IVE  227 (269)
T ss_pred             cccccccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccCHHH---HH---HH----------Hhh
Confidence            32                      113568999999999999999999986433110   00   00          000


Q ss_pred             hhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          539 NWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       539 ~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                      ....+....    .....+.+++.+||+.||++||++.|+..+++
T Consensus       228 ~~~~~~~~~----~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~  268 (269)
T cd08528         228 AVYEPLPEG----MYSEDVTDVITSCLTPDAEARPDIIQVSAMIS  268 (269)
T ss_pred             ccCCcCCcc----cCCHHHHHHHHHHCCCCCccCCCHHHHHHHhc
Confidence            111111111    22345789999999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=1.1e-28  Score=265.46  Aligned_cols=223  Identities=19%  Similarity=0.272  Sum_probs=162.4

Q ss_pred             ceEEEEEE----CCeEEEEEEccH--HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCC
Q 047629          343 KSVYRATI----DGKVLAVKKIKE--DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSS  416 (615)
Q Consensus       343 ~~Vy~~~~----~g~~vAvK~~~~--~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~  416 (615)
                      |.||++..    .++.||||.+..  ...+|+++|++++|+||+++++++... ...++|||++. ++|.+++....   
T Consensus       106 g~Vy~~~~~~~~~~~~v~vK~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~-~~l~~~l~~~~---  180 (392)
T PHA03207        106 GEVFVCTKHGDEQRKKVIVKAVTGGKTPGREIDILKTISHRAIINLIHAYRWK-STVCMVMPKYK-CDLFTYVDRSG---  180 (392)
T ss_pred             eEEEEEEEcCCccceeEEEEeccccccHHHHHHHHHhcCCCCccceeeeEeeC-CEEEEEehhcC-CCHHHHHHhcC---
Confidence            58999875    357899999863  467899999999999999999987653 47899999996 68999984332   


Q ss_pred             CCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------------
Q 047629          417 SSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------------  482 (615)
Q Consensus       417 ~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------------  482 (615)
                             .++|.+++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...              
T Consensus       181 -------~l~~~~~~~i~~ql~~aL~~LH~~g---ivHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt  250 (392)
T PHA03207        181 -------PLPLEQAITIQRRLLEALAYLHGRG---IIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGT  250 (392)
T ss_pred             -------CCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEcCCCCEEEccCccccccCcccccccccccccc
Confidence                   3899999999999999999999998   9999999999999999999999999985431              


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHH---------HHHHHHhhhcC
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE---------KREERLRNWMD  542 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~d  542 (615)
                                 ..++.++|||||||++|||++|+.||..............+...+....         .....+... .
T Consensus       251 ~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~  329 (392)
T PHA03207        251 LETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQY-A  329 (392)
T ss_pred             cCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccchhHHHHHHhh-c
Confidence                       1245689999999999999999999876543221111111111110000         000000000 0


Q ss_pred             CcCCCCCC-------hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          543 PNLESFYP-------IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       543 p~l~~~~~-------~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ......+.       ......+.++++.|+..||++||++.|++.+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~  375 (392)
T PHA03207        330 IVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILSL  375 (392)
T ss_pred             ccccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHHHHhhC
Confidence            00111111       0123456789999999999999999999986

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.96  E-value=4.4e-29  Score=266.66  Aligned_cols=225  Identities=21%  Similarity=0.205  Sum_probs=167.2

Q ss_pred             HHHHHHHccccccccccc----ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEc
Q 047629          325 IEVIMESTMNLSEHYSIG----KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSD  388 (615)
Q Consensus       325 ~~~l~~at~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~  388 (615)
                      +.++.....+|.....+|    |.||++..  +++.+|+|.+..          .+.+|+.+++.++||||+++++++.+
T Consensus        35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~  114 (371)
T cd05622          35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  114 (371)
T ss_pred             HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc
Confidence            334444445565555565    48999987  688999998852          25679999999999999999998875


Q ss_pred             CCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC
Q 047629          389 SQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF  468 (615)
Q Consensus       389 ~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~  468 (615)
                       +...++||||+++|+|.+++....           ++...+..++.|++.||+|||+++   |+||||||+|||++.++
T Consensus       115 -~~~~~lv~Ey~~gg~L~~~~~~~~-----------~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDLkp~NIll~~~~  179 (371)
T cd05622         115 -DRYLYMVMEYMPGGDLVNLMSNYD-----------VPEKWARFYTAEVVLALDAIHSMG---FIHRDVKPDNMLLDKSG  179 (371)
T ss_pred             -CCEEEEEEcCCCCCcHHHHHHhcC-----------CCHHHHHHHHHHHHHHHHHHHHCC---EEeCCCCHHHEEECCCC
Confidence             447999999999999999986532           778888899999999999999998   99999999999999999


Q ss_pred             cEEEeecCCCCCCCC----------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHH
Q 047629          469 KAKIANFSLAAPATN----------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLW  520 (615)
Q Consensus       469 ~~kl~DFGla~~~~~----------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~  520 (615)
                      .+||+|||+++....                            .++.++|||||||++|||++|+.||......   .. 
T Consensus       180 ~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~---~~-  255 (371)
T cd05622         180 HLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLV---GT-  255 (371)
T ss_pred             CEEEEeCCceeEcCcCCcccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCCHH---HH-
Confidence            999999999853210                            1456899999999999999999999754311   00 


Q ss_pred             HHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCC--CCCHHHHHHHH
Q 047629          521 KEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLS--RPNMAEVVFNL  582 (615)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~--RPsm~ev~~~L  582 (615)
                        +..           +.... ..+.-....+....+.+++..|+..++.+  ||++.|++++.
T Consensus       256 --~~~-----------i~~~~-~~~~~~~~~~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~h~  305 (371)
T cd05622         256 --YSK-----------IMNHK-NSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHL  305 (371)
T ss_pred             --HHH-----------HHcCC-CcccCCCcCCCCHHHHHHHHHHcCChhhhcCCCCHHHHhcCc
Confidence              111           11000 00100011123445788999999844433  78999988864

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.96  E-value=5.8e-29  Score=254.93  Aligned_cols=223  Identities=20%  Similarity=0.343  Sum_probs=162.3

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||+|..  +|+.||||+++         ..+.+|++++++++|+||+++++++.+. ...++||||+. ++|.+++..
T Consensus        14 ~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~~~~v~e~~~-~~l~~~~~~   91 (284)
T cd07860          14 GVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTE-NKLYLVFEFLH-QDLKKFMDA   91 (284)
T ss_pred             eEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccC-CcEEEEeeccc-cCHHHHHHh
Confidence            48999987  68999999885         2467899999999999999999998654 47999999996 689999875


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------  482 (615)
                      ....        .+++.++..++.|++.||+|||+.+   ++||||||+||+++.++.+||+|||+++...         
T Consensus        92 ~~~~--------~l~~~~~~~~~~~i~~~l~~lh~~~---i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~  160 (284)
T cd07860          92 SPLS--------GIPLPLIKSYLFQLLQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHE  160 (284)
T ss_pred             CCCC--------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEEeeccchhhcccCccccccc
Confidence            4321        3899999999999999999999998   9999999999999999999999999875321         


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhH----------HHHHHHHH
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV----------EEKREERL  537 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~~  537 (615)
                                     ...+.++||||||+++|||+||+.|+....+...  ....+......          ........
T Consensus       161 ~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (284)
T cd07860         161 VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQ--LFRIFRTLGTPDEVVWPGVTSLPDYKPSF  238 (284)
T ss_pred             cccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHH--HHHHHHHhCCCChhhhhhhhHHHHHHhhc
Confidence                           0124579999999999999999999875432111  11111000000          00000011


Q ss_pred             hhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          538 RNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       538 ~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..+....+.. ........+.+++.+|++.||.+||+++|++++
T Consensus       239 ~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~  281 (284)
T cd07860         239 PKWARQDFSK-VVPPLDEDGRDLLSQMLHYDPNKRISAKAALAH  281 (284)
T ss_pred             ccccccCHHH-HcccCCHHHHHHHHHhcCCCcccCCCHHHHhcC
Confidence            1111111100 011122356899999999999999999999853

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.96  E-value=1.5e-28  Score=253.30  Aligned_cols=207  Identities=24%  Similarity=0.377  Sum_probs=162.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      +.||+|..  +|+.+|+|.+.       +.+.+|++++++++|+|++++++.+.. ++..++||||+++|+|..++....
T Consensus        26 g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~l~~~~~~~~  104 (292)
T cd06644          26 GKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYW-DGKLWIMIEFCPGGAVDAIMLELD  104 (292)
T ss_pred             eEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEe-CCeEEEEEecCCCCcHHHHHHhhc
Confidence            58999987  57999999985       246789999999999999999998765 457999999999999998886543


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                      .         .+++..+..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||++....           
T Consensus       105 ~---------~l~~~~~~~~~~ql~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  172 (292)
T cd06644         105 R---------GLTEPQIQVICRQMLEALQYLHSMK---IIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIG  172 (292)
T ss_pred             C---------CCCHHHHHHHHHHHHHHHHHHhcCC---eeecCCCcceEEEcCCCCEEEccCccceeccccccccceecC
Confidence            2         3899999999999999999999987   9999999999999999999999999874321           


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                       ..++.++|||||||++|||++|+.|+.......      .+.           .+.....+.+
T Consensus       173 ~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~------~~~-----------~~~~~~~~~~  235 (292)
T cd06644         173 TPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMR------VLL-----------KIAKSEPPTL  235 (292)
T ss_pred             CccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccHHH------HHH-----------HHhcCCCccC
Confidence                             012457999999999999999999986533110      000           0111111111


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                        ..+......+.+++.+||+.||++||++.|+++.
T Consensus       236 --~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  269 (292)
T cd06644         236 --SQPSKWSMEFRDFLKTALDKHPETRPSAAQLLEH  269 (292)
T ss_pred             --CCCcccCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence              1122333467899999999999999999999874

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.96  E-value=6.9e-29  Score=252.03  Aligned_cols=208  Identities=24%  Similarity=0.367  Sum_probs=161.8

Q ss_pred             ceEEEEEE--CCeEEEEEEccH-------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE-------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~-------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      +.||++..  +++.||+|.++.       .+.+|+.+++.++|+||+++++.+... +..++|+||+++|+|.+++....
T Consensus        23 ~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~~~  101 (267)
T cd06645          23 GDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRR-DKLWICMEFCGGGSLQDIYHVTG  101 (267)
T ss_pred             eEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeC-CEEEEEEeccCCCcHHHHHHhcC
Confidence            47999987  689999998752       366799999999999999999988754 47999999999999999987543


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                                .+++.++..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||++....           
T Consensus       102 ----------~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~  168 (267)
T cd06645         102 ----------PLSESQIAYVSRETLQGLYYLHSKG---KMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRKSFIG  168 (267)
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEECcceeeeEccCcccccccccC
Confidence                      2889999999999999999999998   9999999999999999999999999874221           


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ..++.++|||||||++|||++|+.|+.........  ..    .         .......+....
T Consensus       169 ~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~~--~~----~---------~~~~~~~~~~~~  233 (267)
T cd06645         169 TPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRAL--FL----M---------TKSNFQPPKLKD  233 (267)
T ss_pred             cccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccchhhH--Hh----h---------hccCCCCCcccc
Confidence                           11445799999999999999999998643321110  00    0         000111111111


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                        .......+.+++.+|++.+|++||++++|+++
T Consensus       234 --~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~~  265 (267)
T cd06645         234 --KMKWSNSFHHFVKMALTKNPKKRPTAEKLLQH  265 (267)
T ss_pred             --cCCCCHHHHHHHHHHccCCchhCcCHHHHhcC
Confidence              01122357899999999999999999998763

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.96  E-value=6.8e-29  Score=254.42  Aligned_cols=223  Identities=19%  Similarity=0.304  Sum_probs=162.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||++..  +|+.+|+|+++         ..+.+|++++++++|+||+++++++.+. ...++++||++ |+|.+++..
T Consensus        14 ~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~-~~l~~~~~~   91 (284)
T cd07839          14 GTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSD-KKLTLVFEYCD-QDLKKYFDS   91 (284)
T ss_pred             eEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccC-CceEEEEecCC-CCHHHHHHh
Confidence            47999998  68999999885         2467899999999999999999988654 47999999997 588888865


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------  482 (615)
                      ...         .+++..+..++.||+.||.|||+++   ++||||||+||+++.++.+||+|||+++...         
T Consensus        92 ~~~---------~~~~~~~~~~~~qi~~al~~LH~~~---i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~  159 (284)
T cd07839          92 CNG---------DIDPEIVKSFMFQLLKGLAFCHSHN---VLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCYSAE  159 (284)
T ss_pred             cCC---------CCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEEcCCCcEEECccchhhccCCCCCCcCCC
Confidence            432         3899999999999999999999998   9999999999999999999999999886421         


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH-HHHHHHHhhhcCCcCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE-EKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~dp~l~  546 (615)
                                     ...+.++|||||||++|||++|+.|+....+...  ....+...+... ...-..+....+....
T Consensus       160 ~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (284)
T cd07839         160 VVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDD--QLKRIFRLLGTPTEESWPGVSKLPDYKPY  237 (284)
T ss_pred             ccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHH--HHHHHHHHhCCCChHHhHHhhhccccccc
Confidence                           0135689999999999999999988654332211  111111111000 0000011111111110


Q ss_pred             CCC---------ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          547 SFY---------PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       547 ~~~---------~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..+         .......+.+++..|++.||.+|||+.|+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~h  281 (284)
T cd07839         238 PMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQH  281 (284)
T ss_pred             CCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhcC
Confidence            011         11233567899999999999999999999763

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.96  E-value=3.4e-29  Score=256.86  Aligned_cols=222  Identities=24%  Similarity=0.374  Sum_probs=163.1

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||+|..  +++.||+|+++         +.+.+|++++++++|+||+++++++.. ++..++||||++++.+..++..
T Consensus        15 ~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~iv~e~~~~~~l~~~~~~   93 (288)
T cd07833          15 GVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRR-KGRLYLVFEYVERTLLELLEAS   93 (288)
T ss_pred             eeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEE-CCEEEEEEecCCCCHHHHHHhc
Confidence            47999987  57899999875         247789999999999999999999875 4479999999998777766544


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--------  483 (615)
                      ..          .+++.++..++.|++.||.|||+.+   ++||||||+||++++++.+||+|||++.....        
T Consensus        94 ~~----------~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~  160 (288)
T cd07833          94 PG----------GLPPDAVRSYIWQLLQAIAYCHSHN---IIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTD  160 (288)
T ss_pred             CC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCCEEEEeeecccccCCCccccccC
Confidence            32          2889999999999999999999998   99999999999999999999999998754211        


Q ss_pred             -----------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHH-H------Hh-
Q 047629          484 -----------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREE-R------LR-  538 (615)
Q Consensus       484 -----------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~------~~-  538 (615)
                                       ..+.++||||||+++|||++|+.|+......+  .++. ....+........ .      .. 
T Consensus       161 ~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  237 (288)
T cd07833         161 YVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDID--QLYL-IQKCLGPLPPSHQELFSSNPRFAG  237 (288)
T ss_pred             cccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHH--HHHH-HHHHhCCCCHHHhhhcccCccccc
Confidence                             24568999999999999999999987543221  1111 1110000000000 0      00 


Q ss_pred             -hhcCCc----CCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          539 -NWMDPN----LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       539 -~~~dp~----l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       +..+..    +...++.....++.++++.||+.+|++||+++++++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  285 (288)
T cd07833         238 VAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQH  285 (288)
T ss_pred             cccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhcC
Confidence             000000    0011222335678999999999999999999998763

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.96  E-value=7.1e-29  Score=260.02  Aligned_cols=197  Identities=23%  Similarity=0.350  Sum_probs=154.7

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhcC-CCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l~-H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||++..  +|+.||+|.++++          +..|..++..+. |++|+++.+++.+ ++..++||||+++|+|.+++
T Consensus        14 g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-~~~~~lv~Ey~~~g~L~~~i   92 (323)
T cd05615          14 GKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQT-VDRLYFVMEYVNGGDLMYHI   92 (323)
T ss_pred             eEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEec-CCEEEEEEcCCCCCcHHHHH
Confidence            58999987  6899999998632          456888888885 5677788887764 44799999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      ....          .+++.++..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...       
T Consensus        93 ~~~~----------~l~~~~~~~i~~qi~~al~~lH~~~---ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~~~~  159 (323)
T cd05615          93 QQVG----------KFKEPQAVFYAAEISVGLFFLHRRG---IIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVTTR  159 (323)
T ss_pred             HHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHeEECCCCCEEEeccccccccCCCCcccc
Confidence            7543          2899999999999999999999998   9999999999999999999999999876421       


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                      ..++.++|||||||++|||++|+.||......   ...   .              .++...  
T Consensus       160 ~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~---~~~---~--------------~i~~~~--  217 (323)
T cd05615         160 TFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDED---ELF---Q--------------SIMEHN--  217 (323)
T ss_pred             CccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHH---HHH---H--------------HHHhCC--
Confidence                            12456899999999999999999999754321   011   0              011111  


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNM  575 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm  575 (615)
                      ..++......+.+++.+|++.+|.+|++.
T Consensus       218 ~~~p~~~~~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05615         218 VSYPKSLSKEAVSICKGLMTKHPSKRLGC  246 (323)
T ss_pred             CCCCccCCHHHHHHHHHHcccCHhhCCCC
Confidence            12233344567899999999999999984

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.96  E-value=1.5e-28  Score=247.50  Aligned_cols=205  Identities=25%  Similarity=0.402  Sum_probs=162.4

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGKVLAVKKIK------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      +.||+|..  +++.|++|.+.            +.+.+|++++++++|+||+++.+++.+. ...++++||+++++|.++
T Consensus        14 ~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~   92 (258)
T cd06632          14 GSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREE-DNLYIFLELVPGGSLAKL   92 (258)
T ss_pred             ceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecC-CeEEEEEEecCCCcHHHH
Confidence            58999997  68999999763            2367899999999999999999998754 478999999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      +....          .+++..+..++.|++.||.|||+.+   ++|+||||+||+++.++.+||+|||++....      
T Consensus        93 ~~~~~----------~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~~~~  159 (258)
T cd06632          93 LKKYG----------SFPEPVIRLYTRQILLGLEYLHDRN---TVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAK  159 (258)
T ss_pred             HHhcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEccCccceecccccccc
Confidence            97543          2889999999999999999999998   9999999999999999999999999875321      


Q ss_pred             ----------------CC-CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          483 ----------------ND-VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       483 ----------------~~-~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                      .. .+.++|+||||+++|||++|+.|+.......  ..+    .           .....+  .
T Consensus       160 ~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~~~--~~~----~-----------~~~~~~--~  220 (258)
T cd06632         160 SFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGVA--AVF----K-----------IGRSKE--L  220 (258)
T ss_pred             ccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcHHH--HHH----H-----------HHhccc--C
Confidence                            11 4567999999999999999999986543110  000    0           000000  0


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       ...+......+.+++.+||+.+|.+||++.|++..
T Consensus       221 -~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  255 (258)
T cd06632         221 -PPIPDHLSDEAKDFILKCLQRDPSLRPTAAELLEH  255 (258)
T ss_pred             -CCcCCCcCHHHHHHHHHHhhcCcccCcCHHHHhcC
Confidence             11222334557899999999999999999999863

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.96  E-value=6.6e-30  Score=271.08  Aligned_cols=214  Identities=22%  Similarity=0.408  Sum_probs=168.2

Q ss_pred             cccccc--ceEEEEEE--CCeEEEEEEcc-----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCC-cEEEEEeec
Q 047629          337 EHYSIG--KSVYRATI--DGKVLAVKKIK-----------EDVTEELRILQRINHANLVKLMGVSSDSQG-NRFLVYEYA  400 (615)
Q Consensus       337 ~~~~iG--~~Vy~~~~--~g~~vAvK~~~-----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~-~~~lV~E~~  400 (615)
                      +..+.|  ++||||..  +|..||=-.++           +.|..|+.+|+.|+|+|||+++.++.+.+. ..-+|+|.|
T Consensus        46 evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL~  125 (632)
T KOG0584|consen   46 EVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITELF  125 (632)
T ss_pred             hhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeecc
Confidence            333444  58999987  56666532221           357889999999999999999999876543 267899999


Q ss_pred             CCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC-CcEEEeecCCCC
Q 047629          401 ENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR-FKAKIANFSLAA  479 (615)
Q Consensus       401 ~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-~~~kl~DFGla~  479 (615)
                      ..|+|..|+++.+.          ++.+.+..|++||++||.|||++ .|||||||||..||+++.+ |.+||+|+|||.
T Consensus       126 TSGtLr~Y~kk~~~----------vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAt  194 (632)
T KOG0584|consen  126 TSGTLREYRKKHRR----------VNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLAT  194 (632)
T ss_pred             cCCcHHHHHHHhcc----------CCHHHHHHHHHHHHHHhhhhhcC-CCCccccccccceEEEcCCcCceeecchhHHH
Confidence            99999999998764          78889999999999999999998 5889999999999999886 899999999996


Q ss_pred             CCC--------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhh
Q 047629          480 PAT--------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRN  539 (615)
Q Consensus       480 ~~~--------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  539 (615)
                      ...                    ..|...+||||||+.++||+|+..|+....+.-  ..   ++.+..  +.....+.+
T Consensus       195 l~r~s~aksvIGTPEFMAPEmYEE~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~A--QI---YKKV~S--GiKP~sl~k  267 (632)
T KOG0584|consen  195 LLRKSHAKSVIGTPEFMAPEMYEENYNELVDVYAFGMCMLEMVTSEYPYSECTNPA--QI---YKKVTS--GIKPAALSK  267 (632)
T ss_pred             HhhccccceeccCccccChHHHhhhcchhhhhhhhhHHHHHHHhccCChhhhCCHH--HH---HHHHHc--CCCHHHhhc
Confidence            542                    225678999999999999999999997654321  11   222221  112344455


Q ss_pred             hcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          540 WMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       540 ~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +-||            ++.+++..|+.. ..+|||+.|++..
T Consensus       268 V~dP------------evr~fIekCl~~-~~~R~sa~eLL~d  296 (632)
T KOG0584|consen  268 VKDP------------EVREFIEKCLAT-KSERLSAKELLKD  296 (632)
T ss_pred             cCCH------------HHHHHHHHHhcC-chhccCHHHHhhC
Confidence            4454            368999999999 9999999999985

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.96  E-value=7.5e-29  Score=256.03  Aligned_cols=205  Identities=23%  Similarity=0.381  Sum_probs=163.4

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      +.||++..  +++.||||.+.       +.+.+|+.++++++|+||+++++.+... +..++||||+++++|.+++... 
T Consensus        36 g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~~-  113 (292)
T cd06658          36 GIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVG-DELWVVMEFLEGGALTDIVTHT-  113 (292)
T ss_pred             eEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecC-CeEEEEEeCCCCCcHHHHHhcC-
Confidence            57999886  68999999875       2467899999999999999999988754 4789999999999999998542 


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                                .+++.++..++.|++.||+|||+++   ++||||||+||++++++.+||+|||++....           
T Consensus       114 ----------~l~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~  180 (292)
T cd06658         114 ----------RMNEEQIATVCLSVLRALSYLHNQG---VIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVG  180 (292)
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHHCC---EeecCCCHHHEEEcCCCCEEEccCcchhhcccccccCceeec
Confidence                      2789999999999999999999998   9999999999999999999999999875321           


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  ...+.++||||||+++|||++|+.|+........      +.           .+...+.+.+.... 
T Consensus       181 ~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~------~~-----------~~~~~~~~~~~~~~-  242 (292)
T cd06658         181 TPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQA------MR-----------RIRDNLPPRVKDSH-  242 (292)
T ss_pred             CccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH------HH-----------HHHhcCCCcccccc-
Confidence                        1245789999999999999999999865332110      00           11122222222211 


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       .....+.+++..||..||.+|||+.|+++.
T Consensus       243 -~~~~~~~~li~~~l~~~P~~Rpt~~~il~~  272 (292)
T cd06658         243 -KVSSVLRGFLDLMLVREPSQRATAQELLQH  272 (292)
T ss_pred             -ccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence             223357889999999999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.96  E-value=5.5e-29  Score=257.11  Aligned_cols=222  Identities=25%  Similarity=0.306  Sum_probs=164.1

Q ss_pred             ceEEEEEE--CCeEEEEEEccH------------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGKVLAVKKIKE------------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~------------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      +.||+|..  +|+.||||+++.            .+..|++++++++|+||+++++++.+ +...++||||+ +|+|.++
T Consensus        14 ~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~~lv~e~~-~~~L~~~   91 (298)
T cd07841          14 AVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGH-KSNINLVFEFM-ETDLEKV   91 (298)
T ss_pred             cEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeec-CCEEEEEEccc-CCCHHHH
Confidence            48999987  689999999852            24579999999999999999999876 44789999999 8999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      +.....         .+++..+..++.|+++||.|||+++   ++|+||||+||+++.++.+||+|||+++...      
T Consensus        92 i~~~~~---------~~~~~~~~~~~~qi~~al~~lH~~~---i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~  159 (298)
T cd07841          92 IKDKSI---------VLTPADIKSYMLMTLRGLEYLHSNW---ILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKM  159 (298)
T ss_pred             HhccCC---------CCCHHHHHHHHHHHHHHHHHHHhCC---eeecCCChhhEEEcCCCCEEEccceeeeeccCCCccc
Confidence            976431         3899999999999999999999998   9999999999999999999999999885431      


Q ss_pred             ------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH--HHH--HHHHhhh
Q 047629          483 ------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE--EKR--EERLRNW  540 (615)
Q Consensus       483 ------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~--~~~--~~~~~~~  540 (615)
                                        ...+.++|||||||++|||++|..++....+.+.   .......+...  ...  ...+...
T Consensus       160 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  236 (298)
T cd07841         160 THQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDIDQ---LGKIFEALGTPTEENWPGVTSLPDY  236 (298)
T ss_pred             cccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccHHH---HHHHHHHcCCCchhhhhhccccccc
Confidence                              1134679999999999999999777764332111   11111111000  000  0001011


Q ss_pred             cCCcCCCCC-----ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          541 MDPNLESFY-----PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       541 ~dp~l~~~~-----~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .........     .......+.+++.+||+.||++|||+.|++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~~  282 (298)
T cd07841         237 VEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEH  282 (298)
T ss_pred             ccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence            110001111     12234578899999999999999999999984

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.96  E-value=9.2e-29  Score=282.21  Aligned_cols=223  Identities=20%  Similarity=0.239  Sum_probs=167.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||+|..  +|+.||||+++.          .+.+|++++++++||||+++++++.+. +..++||||+++|+|.+++.
T Consensus        16 G~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~-~~lyLVMEY~eGGSL~~lL~   94 (932)
T PRK13184         16 GEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDG-DPVYYTMPYIEGYTLKSLLK   94 (932)
T ss_pred             EEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeC-CEEEEEEEcCCCCCHHHHHH
Confidence            58999987  689999998852          477899999999999999999998754 47899999999999999986


Q ss_pred             cCCCCC-CCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          411 PKSKSS-SSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       411 ~~~~~~-~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      ...... ........+++..+++++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...       
T Consensus        95 s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~G---IIHRDLKPeNILLd~dg~vKLiDFGLAk~i~~~~~~~~  171 (932)
T PRK13184         95 SVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKG---VLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLL  171 (932)
T ss_pred             HhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCC---ccccCCchheEEEcCCCCEEEEecCcceeccccccccc
Confidence            532110 00011124778899999999999999999998   9999999999999999999999999986430       


Q ss_pred             ----------------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHh
Q 047629          483 ----------------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLK  528 (615)
Q Consensus       483 ----------------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~  528 (615)
                                                        ...+.++|||||||++|||++|+.|+........ . .        
T Consensus       172 ~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~ki-~-~--------  241 (932)
T PRK13184        172 DIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRKI-S-Y--------  241 (932)
T ss_pred             ccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhhh-h-h--------
Confidence                                              1134578999999999999999999975332110 0 0        


Q ss_pred             HHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHhcccc
Q 047629          529 VEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRP-NMAEVVFNLSVLTQS  588 (615)
Q Consensus       529 ~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RP-sm~ev~~~L~~l~~~  588 (615)
                           ..   ...+|.-.. ...+.+..+.+++.+|++.||++|| +++++.+.|+...+.
T Consensus       242 -----~~---~i~~P~~~~-p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~Le~~lq~  293 (932)
T PRK13184        242 -----RD---VILSPIEVA-PYREIPPFLSQIAMKALAVDPAERYSSVQELKQDLEPHLQG  293 (932)
T ss_pred             -----hh---hccChhhcc-ccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhc
Confidence                 00   001110000 0112334578999999999999996 577888888776554

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.96  E-value=2e-28  Score=255.86  Aligned_cols=212  Identities=27%  Similarity=0.398  Sum_probs=165.1

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||++..  +|+.+|+|++.          ..+.+|++++++++|+|++++++++.+. ...++||||++ |+|.+++.
T Consensus        39 ~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~-g~l~~~~~  116 (317)
T cd06635          39 GAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLRE-HTAWLVMEYCL-GSASDLLE  116 (317)
T ss_pred             eEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeC-CeEEEEEeCCC-CCHHHHHH
Confidence            48999987  68999999875          2467899999999999999999998754 47899999997 58888876


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ....         .++|.++..++.|++.||.|||+++   ++||||+|+||+++.++.+||+|||++....        
T Consensus       117 ~~~~---------~l~~~~~~~i~~~i~~~l~~lH~~~---i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~  184 (317)
T cd06635         117 VHKK---------PLQEVEIAAITHGALQGLAYLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSASIASPANSFVGT  184 (317)
T ss_pred             HhcC---------CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcccEEECCCCCEEEecCCCccccCCcccccCC
Confidence            4432         3899999999999999999999998   9999999999999999999999999874321        


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                    ...+.++|||||||++|||++|+.|+........   .   ..           +.....+..   
T Consensus       185 ~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~---~---~~-----------~~~~~~~~~---  244 (317)
T cd06635         185 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA---L---YH-----------IAQNESPTL---  244 (317)
T ss_pred             ccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCccHHHH---H---HH-----------HHhccCCCC---
Confidence                          1245689999999999999999999865321110   0   00           000001111   


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      ........+.+++.+||+.+|.+||++.|+++.+..+...
T Consensus       245 ~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~~  284 (317)
T cd06635         245 QSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHMFVLRER  284 (317)
T ss_pred             CCccccHHHHHHHHHHccCCcccCcCHHHHHhChhhhccC
Confidence            1122334688999999999999999999999976655444

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.5e-28  Score=250.97  Aligned_cols=204  Identities=23%  Similarity=0.386  Sum_probs=162.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcC---CCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRIN---HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~---H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      +.||+|..  +|+.+|+|.++        .++.+|++++++++   |+|++++++++.+. ...++||||+++++|.+++
T Consensus        15 g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~-~~~~lv~e~~~~~~L~~~~   93 (277)
T cd06917          15 GAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKG-PRLWIIMEYAEGGSVRTLM   93 (277)
T ss_pred             ceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeC-CEEEEEEecCCCCcHHHHH
Confidence            48999997  68999999874        24778999999997   99999999998754 4789999999999999998


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      ...           .+++.....++.|++.||.|||+.+   ++|+||+|+||++++++.++++|||++....       
T Consensus        94 ~~~-----------~l~~~~~~~i~~~i~~~l~~lh~~~---i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~  159 (277)
T cd06917          94 KAG-----------PIAEKYISVIIREVLVALKYIHKVG---VIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRS  159 (277)
T ss_pred             Hcc-----------CCCHHHHHHHHHHHHHHHHHHHhCC---cccCCcCHHHEEEcCCCCEEEccCCceeecCCCccccc
Confidence            643           2889999999999999999999998   9999999999999999999999999875321       


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                       ...+.++|||||||++|||++|+.|+........      .           ..+.....+.+
T Consensus       160 ~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~------~-----------~~~~~~~~~~~  222 (277)
T cd06917         160 TFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAFRA------M-----------MLIPKSKPPRL  222 (277)
T ss_pred             cccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChhhh------h-----------hccccCCCCCC
Confidence                             1135689999999999999999999865432110      0           00111111222


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..+   .....+.+++.+||+.||++||++.|++.+
T Consensus       223 ~~~---~~~~~~~~~i~~~l~~~p~~R~~~~~il~~  255 (277)
T cd06917         223 EDN---GYSKLLREFVAACLDEEPKERLSAEELLKS  255 (277)
T ss_pred             Ccc---cCCHHHHHHHHHHcCCCcccCcCHHHHhhC
Confidence            211   133468899999999999999999999874

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.96  E-value=1.6e-28  Score=252.29  Aligned_cols=224  Identities=22%  Similarity=0.317  Sum_probs=160.2

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhc---CCCCcccEEEEEEcC----CCcEEEEEeecCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRI---NHANLVKLMGVSSDS----QGNRFLVYEYAENGS  404 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l---~H~niv~l~g~~~~~----~~~~~lV~E~~~~Gs  404 (615)
                      |.||++..  +|+.||+|.++.         .+.+|+++++++   +|+||+++++++...    ....++++||++ ++
T Consensus        14 g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~-~~   92 (288)
T cd07863          14 GTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETKVTLVFEHVD-QD   92 (288)
T ss_pred             eEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCceEEEEEcccc-cC
Confidence            58999987  689999998752         356788887766   799999999987532    224789999998 58


Q ss_pred             HHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--
Q 047629          405 LDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--  482 (615)
Q Consensus       405 L~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--  482 (615)
                      |.+++......        .+++..+..++.|++.||.|||+++   ++||||||+|||++.++.+||+|||+++...  
T Consensus        93 l~~~~~~~~~~--------~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dikp~Nili~~~~~~kl~dfg~~~~~~~~  161 (288)
T cd07863          93 LRTYLDKVPPP--------GLPAETIKDLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGQVKLADFGLARIYSCQ  161 (288)
T ss_pred             HHHHHHhcCCC--------CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEECccCccccccCc
Confidence            99998754321        3899999999999999999999998   9999999999999999999999999986431  


Q ss_pred             --------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH--HHHHHHH---
Q 047629          483 --------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE--EKREERL---  537 (615)
Q Consensus       483 --------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~---  537 (615)
                                          ..++.++|||||||++|||++|+.||......+.   ...+.......  .......   
T Consensus       162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  238 (288)
T cd07863         162 MALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQ---LGKIFDLIGLPPEDDWPRDVTLP  238 (288)
T ss_pred             ccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHH---HHHHHHHhCCCChhhCccccccc
Confidence                                1245689999999999999999999865432111   11111111000  0000000   


Q ss_pred             hhhcCCcCC---CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          538 RNWMDPNLE---SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       538 ~~~~dp~l~---~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .....+...   .....+....+.+++.+|++.||++|||+.|++..
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~h  285 (288)
T cd07863         239 RGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQH  285 (288)
T ss_pred             ccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence            000000000   01111234467899999999999999999998853

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1e-28  Score=251.01  Aligned_cols=211  Identities=25%  Similarity=0.407  Sum_probs=162.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhc-CCCCcccEEEEEEcCC-----CcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGKVLAVKKIK------EDVTEELRILQRI-NHANLVKLMGVSSDSQ-----GNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~-----~~~~lV~E~~~~GsL~~~  408 (615)
                      +.||+|..  +++.+++|.++      ..+.+|+++++++ +|+||+++++++....     ...++||||+++++|.++
T Consensus        20 ~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~   99 (275)
T cd06608          20 GKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDL   99 (275)
T ss_pred             eEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceEEEEEEEcCCCCcHHHH
Confidence            47999987  57899999875      4578899999999 7999999999986432     237999999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      +.......      ..+++..+..++.|++.||.|||+++   ++|+||+|+||++++++.+||+|||++....      
T Consensus       100 ~~~~~~~~------~~~~~~~~~~~~~ql~~al~~lH~~~---i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~  170 (275)
T cd06608         100 VKGLRKKG------KRLKEEWIAYILRETLRGLAYLHENK---VIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRR  170 (275)
T ss_pred             HHHHhhcC------CCCCHHHHHHHHHHHHHHHHHHhcCC---cccCCCCHHHEEEccCCeEEECCCccceecccchhhh
Confidence            87533111      13899999999999999999999998   9999999999999999999999999874321      


Q ss_pred             ----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhh
Q 047629          483 ----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNW  540 (615)
Q Consensus       483 ----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  540 (615)
                                            ..++.++|||||||+++||++|+.|+........      ...           +...
T Consensus       171 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~------~~~-----------~~~~  233 (275)
T cd06608         171 NTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPMRA------LFK-----------IPRN  233 (275)
T ss_pred             cCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccchHHH------HHH-----------hhcc
Confidence                                  1134579999999999999999999864322110      000           1111


Q ss_pred             cCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          541 MDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       541 ~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..+.+  ..+.+....+.+++.+||..||++|||+.|+++.
T Consensus       234 ~~~~~--~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~~  272 (275)
T cd06608         234 PPPTL--KSPENWSKKFNDFISECLIKNYEQRPFMEELLEH  272 (275)
T ss_pred             CCCCC--CchhhcCHHHHHHHHHHhhcChhhCcCHHHHhcC
Confidence            11111  1122244568899999999999999999999863

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.96  E-value=6.6e-29  Score=263.62  Aligned_cols=220  Identities=23%  Similarity=0.329  Sum_probs=159.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCC-----CcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQ-----GNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~-----~~~~lV~E~~~~GsL~  406 (615)
                      |.||++..  .++.||||+++         ..+.+|+.+++.++|+||+++++++....     ...++||||+++ +|.
T Consensus        31 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~  109 (355)
T cd07874          31 GIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDA-NLC  109 (355)
T ss_pred             EEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccccceeEEEhhhhcc-cHH
Confidence            47999876  68899999885         23567999999999999999999875332     246999999965 777


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC---
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN---  483 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~---  483 (615)
                      +++..            .+++.++..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++....   
T Consensus       110 ~~~~~------------~l~~~~~~~~~~qi~~aL~~LH~~g---ivHrDikp~Nill~~~~~~kl~Dfg~~~~~~~~~~  174 (355)
T cd07874         110 QVIQM------------ELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM  174 (355)
T ss_pred             HHHhh------------cCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChHHEEECCCCCEEEeeCcccccCCCccc
Confidence            77642            2788999999999999999999998   99999999999999999999999999865321   


Q ss_pred             -------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhH---H--HHHHHHHhh
Q 047629          484 -------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV---E--EKREERLRN  539 (615)
Q Consensus       484 -------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~---~--~~~~~~~~~  539 (615)
                                         .++.++|||||||++|||++|+.||......+   .+..+...+..   +  ......+..
T Consensus       175 ~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (355)
T cd07874         175 MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYID---QWNKVIEQLGTPCPEFMKKLQPTVRN  251 (355)
T ss_pred             cCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHHhCCCCHHHHHhhcHHHHH
Confidence                               24568999999999999999999997543211   11111111000   0  000001111


Q ss_pred             hcC----------CcC--------CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          540 WMD----------PNL--------ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       540 ~~d----------p~l--------~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +++          +..        ....+......+.+|+.+|++.||++|||+.|++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~h  311 (355)
T cd07874         252 YVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQH  311 (355)
T ss_pred             HHhcCCccccccchhhccccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhcC
Confidence            111          000        001111224567899999999999999999999986

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.96  E-value=6.1e-29  Score=264.49  Aligned_cols=156  Identities=22%  Similarity=0.346  Sum_probs=135.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||+|.++.          .+.+|+.++.+++|+||+++++.+.+. +..++||||+++|+|.+++.
T Consensus        15 g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~-~~~~lv~E~~~gg~L~~~l~   93 (360)
T cd05627          15 GEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDK-RNLYLIMEFLPGGDMMTLLM   93 (360)
T ss_pred             EEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcC-CEEEEEEeCCCCccHHHHHH
Confidence            58999987  689999999863          256799999999999999999988754 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ...          .+++.....++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...        
T Consensus        94 ~~~----------~l~~~~~~~~~~qi~~~L~~lH~~g---ivHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~  160 (360)
T cd05627          94 KKD----------TLSEEATQFYIAETVLAIDAIHQLG---FIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFY  160 (360)
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eEccCCCHHHEEECCCCCEEEeeccCCcccccccccccc
Confidence            643          2889999999999999999999998   9999999999999999999999999875321        


Q ss_pred             --------------------------------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCC
Q 047629          483 --------------------------------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTE  512 (615)
Q Consensus       483 --------------------------------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~  512 (615)
                                                                        ..++.++|||||||++|||++|+.||....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~  240 (360)
T cd05627         161 RNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSET  240 (360)
T ss_pred             cccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCCCCCC
Confidence                                                              124568999999999999999999997543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.96  E-value=2.1e-28  Score=254.09  Aligned_cols=209  Identities=21%  Similarity=0.225  Sum_probs=162.1

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||++..  .++.||+|.+..          .+.+|+++++.++|+||+++++.+.. ++..++||||+++|+|.+++.
T Consensus        15 ~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~~lv~e~~~g~~L~~~l~   93 (305)
T cd05609          15 GAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFET-KRHLCMVMEYVEGGDCATLLK   93 (305)
T ss_pred             eeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEec-CCEEEEEEecCCCCcHHHHHH
Confidence            47999887  578999998753          35579999999999999999998865 447899999999999999996


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC---------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA---------  481 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~---------  481 (615)
                      ...          .+++..+..++.|++.||.|||+++   ++||||||+||+++.++.+|++|||+++..         
T Consensus        94 ~~~----------~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~  160 (305)
T cd05609          94 NIG----------ALPVDMARMYFAETVLALEYLHNYG---IVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLY  160 (305)
T ss_pred             HcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCchHHEEECCCCCEEEeeCCCccccCcCcccccc
Confidence            543          3889999999999999999999987   999999999999999999999999987521         


Q ss_pred             -----------------------------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHH
Q 047629          482 -----------------------------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEK  532 (615)
Q Consensus       482 -----------------------------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~  532 (615)
                                                   ....+.++|+||||+++|||++|+.|+......+   +.   ..       
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~~---~~---~~-------  227 (305)
T cd05609         161 EGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEE---LF---GQ-------  227 (305)
T ss_pred             ccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---HH---HH-------
Confidence                                         0123568999999999999999999986433211   00   00       


Q ss_pred             HHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHh
Q 047629          533 REERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSV  584 (615)
Q Consensus       533 ~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~  584 (615)
                        ........|....    .....+.+++.+||+.||++||++.++.+.|+.
T Consensus       228 --~~~~~~~~~~~~~----~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~  273 (305)
T cd05609         228 --VISDDIEWPEGDE----ALPADAQDLISRLLRQNPLERLGTGGAFEVKQH  273 (305)
T ss_pred             --HHhcccCCCCccc----cCCHHHHHHHHHHhccChhhccCccCHHHHHhC
Confidence              0001111122111    233457899999999999999997666666553

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.96  E-value=2.7e-28  Score=254.51  Aligned_cols=164  Identities=24%  Similarity=0.416  Sum_probs=131.2

Q ss_pred             ceEEEEEE----CCeEEEEEEcc-----HHHHHHHHHHHhcCCCCcccEEEEEEcC-CCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI----DGKVLAVKKIK-----EDVTEELRILQRINHANLVKLMGVSSDS-QGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~----~g~~vAvK~~~-----~~~~~Ei~~l~~l~H~niv~l~g~~~~~-~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||+|..    +++.+|+|.++     ..+.+|+++|++++|+||+++++++... +...++++||+. ++|.+++...
T Consensus        15 g~Vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~   93 (317)
T cd07868          15 GHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE-HDLWHIIKFH   93 (317)
T ss_pred             eEEEEEEEccCCCCceEEEEEECCCCCcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccC-CCHHHHHHhc
Confidence            58999985    35789999886     3578899999999999999999987543 335789999996 5888887643


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceee----CCCCcEEEeecCCCCCCC------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL----DSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl----d~~~~~kl~DFGla~~~~------  482 (615)
                      ..... ......+++..+..++.|++.||.|||+++   |+||||||+|||+    +.++.+||+|||+++...      
T Consensus        94 ~~~~~-~~~~~~l~~~~~~~i~~qi~~al~~LH~~~---ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~  169 (317)
T cd07868          94 RASKA-NKKPVQLPRGMVKSLLYQILDGIHYLHANW---VLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPL  169 (317)
T ss_pred             ccccc-cCCcccCCHHHHHHHHHHHHHHHHHHHhCC---EEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCccc
Confidence            22110 011124889999999999999999999998   9999999999999    456789999999985421      


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCC
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTT  511 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~  511 (615)
                                           ..++.++||||+||++|||++|+.||...
T Consensus       170 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~  219 (317)
T cd07868         170 ADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  219 (317)
T ss_pred             cccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCC
Confidence                                 11355799999999999999999998653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.96  E-value=1.6e-28  Score=252.69  Aligned_cols=222  Identities=23%  Similarity=0.361  Sum_probs=161.2

Q ss_pred             ceEEEEEE--CCeEEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      +.||+|..  +|+.||||.++.        .+.+|++++++++|+||+++++++.+. ...++||||++ ++|.+++...
T Consensus        19 ~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~-~~L~~~~~~~   96 (291)
T cd07844          19 ATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTK-KTLTLVFEYLD-TDLKQYMDDC   96 (291)
T ss_pred             eEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecC-CeEEEEEecCC-CCHHHHHHhC
Confidence            48999987  689999998852        356799999999999999999998754 47999999998 5999998754


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                      ..         .+++.....++.|++.||.|||+.+   ++||||||+||+++.++.+||+|||+++...          
T Consensus        97 ~~---------~~~~~~~~~~~~ql~~al~~lH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  164 (291)
T cd07844          97 GG---------GLSMHNVRLFLFQLLRGLAYCHQRR---VLHRDLKPQNLLISERGELKLADFGLARAKSVPSKTYSNEV  164 (291)
T ss_pred             CC---------CCCHHHHHHHHHHHHHHHHHHHhCC---eecccCCHHHEEEcCCCCEEECccccccccCCCCccccccc
Confidence            32         3889999999999999999999998   9999999999999999999999999875321          


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhH--HHHHH--HHHhhhc---
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV--EEKRE--ERLRNWM---  541 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~--~~~~~--~~~~~~~---  541 (615)
                                    ...+.++||||||+++|||++|+.|+........  ....+...+..  .....  ....+..   
T Consensus       165 ~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (291)
T cd07844         165 VTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVED--QLHKIFRVLGTPTEETWPGVSSNPEFKPYS  242 (291)
T ss_pred             cccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHH--HHHHHHHhcCCCChhhhhhhhhcccccccc
Confidence                          1135678999999999999999999865432111  11111111100  00000  0000000   


Q ss_pred             -----CCcCCCCCC-hHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          542 -----DPNLESFYP-IDGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       542 -----dp~l~~~~~-~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                           ...+....+ ......+.+++..|++.+|++||++.|+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~  287 (291)
T cd07844         243 FPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMK  287 (291)
T ss_pred             ccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhc
Confidence                 000000000 111246789999999999999999999875

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.96  E-value=1.5e-28  Score=256.07  Aligned_cols=164  Identities=25%  Similarity=0.426  Sum_probs=131.1

Q ss_pred             ceEEEEEE----CCeEEEEEEccH-----HHHHHHHHHHhcCCCCcccEEEEEEcC-CCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI----DGKVLAVKKIKE-----DVTEELRILQRINHANLVKLMGVSSDS-QGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~----~g~~vAvK~~~~-----~~~~Ei~~l~~l~H~niv~l~g~~~~~-~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||+|..    ++..||+|.++.     .+.+|++++++++|+||+++++++... +...++|+||+++ +|.+++...
T Consensus        15 g~Vy~~~~~~~~~~~~~a~k~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~   93 (317)
T cd07867          15 GHVYKAKRKDGKDEKEYALKQIEGTGISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEH-DLWHIIKFH   93 (317)
T ss_pred             eeEEEEEecCCCccceEEEEEecCCCCcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCC-cHHHHHHhh
Confidence            58999986    347899998863     577899999999999999999987543 3457999999875 788887543


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceee----CCCCcEEEeecCCCCCCC------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL----DSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl----d~~~~~kl~DFGla~~~~------  482 (615)
                      ..... ......+++..+..++.|++.||.|||+++   |+||||||+|||+    +.++.+||+|||+++...      
T Consensus        94 ~~~~~-~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~  169 (317)
T cd07867          94 RASKA-NKKPMQLPRSMVKSLLYQILDGIHYLHANW---VLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPL  169 (317)
T ss_pred             hcccc-CCCCccCCHHHHHHHHHHHHHHHHHHHhCC---EEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccc
Confidence            21110 011124889999999999999999999998   9999999999999    566899999999985421      


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCC
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTT  511 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~  511 (615)
                                           ..++.++|||||||++|||++|+.||...
T Consensus       170 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~~  219 (317)
T cd07867         170 ADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  219 (317)
T ss_pred             cccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCcccc
Confidence                                 11356799999999999999999998654

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.96  E-value=2.5e-28  Score=247.04  Aligned_cols=206  Identities=27%  Similarity=0.453  Sum_probs=162.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||+|..  +++.+|+|.++         ..+.+|++++++++|+||+++++++... ...++|+||+++++|.+++..
T Consensus        14 ~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~   92 (264)
T cd06626          14 GKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHR-EKVYIFMEYCSGGTLEELLEH   92 (264)
T ss_pred             cEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecC-CEEEEEEecCCCCcHHHHHhh
Confidence            48999987  68899999875         2467899999999999999999987654 478999999999999999976


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--------  483 (615)
                      ..          .+++..+..++.+++.||.|||+.+   ++|+||||+||++++++.+||+|||++.....        
T Consensus        93 ~~----------~~~~~~~~~i~~~i~~~l~~lh~~~---i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~  159 (264)
T cd06626          93 GR----------ILDEHVIRVYTLQLLEGLAYLHSHG---IVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEE  159 (264)
T ss_pred             cC----------CCChHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEcccccccccCCCCCccccc
Confidence            43          2788999999999999999999998   99999999999999999999999998754210        


Q ss_pred             ----------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          484 ----------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       484 ----------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                            ..+.++||||||+++||+++|+.||.........     ..           .+....
T Consensus       160 ~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~~-----~~-----------~~~~~~  223 (264)
T cd06626         160 VQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQI-----MF-----------HVGAGH  223 (264)
T ss_pred             ccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcchHHH-----HH-----------HHhcCC
Confidence                                  1456789999999999999999999654321110     00           001111


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                      .+.+...  ......+.+++.+||+.+|.+||++.|++.
T Consensus       224 ~~~~~~~--~~~~~~~~~li~~~l~~~p~~R~~~~~i~~  260 (264)
T cd06626         224 KPPIPDS--LQLSPEGKDFLDRCLESDPKKRPTASELLQ  260 (264)
T ss_pred             CCCCCcc--cccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            1222111  112455789999999999999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.96  E-value=1.5e-28  Score=247.37  Aligned_cols=206  Identities=23%  Similarity=0.330  Sum_probs=161.3

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||++..  +++.+|||.+.         ..+.+|++++++++|+|++++++.+.. ++..++|+||+++|+|.+++..
T Consensus        14 ~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~   92 (256)
T cd08220          14 GIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLE-DKALMIVMEYAPGGTLAEYIQK   92 (256)
T ss_pred             eEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEec-CCEEEEEEecCCCCCHHHHHHH
Confidence            47898876  68899999874         247789999999999999999998764 4479999999999999999976


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC-CcEEEeecCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR-FKAKIANFSLAAPAT--------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-~~~kl~DFGla~~~~--------  482 (615)
                      ....        .+++..+.+++.+++.||+|||+++   ++|+||||+||+++++ ..+|++|||++....        
T Consensus        93 ~~~~--------~~~~~~~~~~~~~i~~~l~~lh~~~---i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~  161 (256)
T cd08220          93 RCNS--------LLDEDTILHFFVQILLALHHVHTKL---ILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYTV  161 (256)
T ss_pred             hccc--------CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEEccCCCceecCCCcccccc
Confidence            4321        3899999999999999999999998   9999999999999865 568999999885432        


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                    ...+.++||||||+++|||++|+.|+........      ....          ... ..+    .
T Consensus       162 ~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~------~~~~----------~~~-~~~----~  220 (256)
T cd08220         162 VGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLPAL------VLKI----------MSG-TFA----P  220 (256)
T ss_pred             ccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCchHHH------HHHH----------Hhc-CCC----C
Confidence                          1135689999999999999999999865432110      0000          000 001    1


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+......+.+++..||+.+|.+|||+.|++..
T Consensus       221 ~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~~  253 (256)
T cd08220         221 ISDRYSPDLRQLILSMLNLDPSKRPQLSQIMAQ  253 (256)
T ss_pred             CCCCcCHHHHHHHHHHccCChhhCCCHHHHhhC
Confidence            122234457899999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.96  E-value=1.4e-28  Score=261.54  Aligned_cols=221  Identities=23%  Similarity=0.326  Sum_probs=160.0

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCC-----CcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQ-----GNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~-----~~~~lV~E~~~~GsL~  406 (615)
                      |.||++..  +|+.||||+++.         .+.+|+.+++.++|+||+++++++...+     ...++||||+++ +|.
T Consensus        35 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~  113 (359)
T cd07876          35 GIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDA-NLC  113 (359)
T ss_pred             EEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccceeEEEEeCCCc-CHH
Confidence            48999986  689999999852         3568999999999999999999875432     236999999975 676


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----  482 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----  482 (615)
                      +.+..            .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...    
T Consensus       114 ~~~~~------------~~~~~~~~~~~~qi~~~L~~LH~~~---ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~  178 (359)
T cd07876         114 QVIHM------------ELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFM  178 (359)
T ss_pred             HHHhc------------cCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEECCCCCEEEecCCCccccccCcc
Confidence            66642            2788889999999999999999998   9999999999999999999999999985421    


Q ss_pred             ------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH-----HHHHHHHhh
Q 047629          483 ------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE-----EKREERLRN  539 (615)
Q Consensus       483 ------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~  539 (615)
                                        ..++.++|||||||++|||++|+.||...+...   .+..+...+...     ......+..
T Consensus       179 ~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (359)
T cd07876         179 MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHID---QWNKVIEQLGTPSAEFMNRLQPTVRN  255 (359)
T ss_pred             CCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence                              124568999999999999999999997654211   121111111000     000001111


Q ss_pred             hcC--CcCCC----------------CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          540 WMD--PNLES----------------FYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       540 ~~d--p~l~~----------------~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      ...  +...+                .........+.+|+.+|++.||++|||+.|++++-
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp  316 (359)
T cd07876         256 YVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRHP  316 (359)
T ss_pred             HHhhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhccCcccCCCHHHHhcCc
Confidence            111  11000                00111234578999999999999999999999863

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.96  E-value=2.3e-28  Score=248.03  Aligned_cols=208  Identities=24%  Similarity=0.400  Sum_probs=163.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      +.||++..  +|+.+|+|.++             +.+.+|++++++++|+||+++++++.+. +..++|+||+++++|.+
T Consensus        14 ~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~~v~e~~~~~~L~~   92 (268)
T cd06630          14 SSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCED-SHFNLFVEWMAGGSVSH   92 (268)
T ss_pred             eEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccC-CeEEEEEeccCCCcHHH
Confidence            47998876  78999999884             2467899999999999999999998754 47899999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC-cEEEeecCCCCCCC----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF-KAKIANFSLAAPAT----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-~~kl~DFGla~~~~----  482 (615)
                      ++....          .+++..+..++.|++.||+|||+++   ++||||||+||+++.++ .+||+|||++....    
T Consensus        93 ~l~~~~----------~~~~~~~~~~~~ql~~al~~LH~~~---i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~  159 (268)
T cd06630          93 LLSKYG----------AFKEAVIINYTEQLLRGLSYLHENQ---IIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGT  159 (268)
T ss_pred             HHHHhC----------CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEEcccccccccccccc
Confidence            997543          3889999999999999999999998   99999999999998775 59999999875321    


Q ss_pred             -----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhh
Q 047629          483 -----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRN  539 (615)
Q Consensus       483 -----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  539 (615)
                                             ...+.++||||+|++++||++|+.|+...........+   ..          ....
T Consensus       160 ~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~---~~----------~~~~  226 (268)
T cd06630         160 GAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALI---FK----------IASA  226 (268)
T ss_pred             cCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchHHHH---HH----------Hhcc
Confidence                                   12346799999999999999999998644321111100   00          0000


Q ss_pred             hcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          540 WMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       540 ~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..    ....+......+.+++..|+..+|.+||++.|+++.
T Consensus       227 ~~----~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~~  264 (268)
T cd06630         227 TT----APSIPEHLSPGLRDVTLRCLELQPEDRPPSRELLKH  264 (268)
T ss_pred             CC----CCCCchhhCHHHHHHHHHHcCCCcccCcCHHHHhcC
Confidence            11    122334445668899999999999999999999853

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.96  E-value=2e-28  Score=251.31  Aligned_cols=210  Identities=21%  Similarity=0.378  Sum_probs=164.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||++..  .|+.+|+|.++        ..+.+|++++++++|+||+++++.+.. ++..++|+||+++++|.+++...
T Consensus        15 g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~~~lv~e~~~~~~l~~~~~~~   93 (286)
T cd06622          15 GSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFI-EGAVYMCMEYMDAGSLDKLYAGG   93 (286)
T ss_pred             eEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheec-CCeEEEEEeecCCCCHHHHHHhc
Confidence            48999988  58999999875        246789999999999999999998775 45799999999999999998764


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhC-CCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH-AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--------  483 (615)
                      ...       ..+++..+..++.+++.||.|||+. +   ++||||||+||+++.++.+||+|||++.....        
T Consensus        94 ~~~-------~~~~~~~~~~~~~~i~~~l~~LH~~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~  163 (286)
T cd06622          94 VAT-------EGIPEDVLRRITYAVVKGLKFLKEEHN---IIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLAKTNIG  163 (286)
T ss_pred             ccc-------CCCCHHHHHHHHHHHHHHHHHHHhcCC---EeeCCCCHHHEEECCCCCEEEeecCCcccccCCccccCCC
Confidence            211       1389999999999999999999974 5   99999999999999999999999998753210        


Q ss_pred             -------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCc
Q 047629          484 -------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPN  544 (615)
Q Consensus       484 -------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~  544 (615)
                                         .++.++|||||||++|||++|+.||........   ...+           ..+.....+.
T Consensus       164 ~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~---~~~~-----------~~~~~~~~~~  229 (286)
T cd06622         164 CQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYANI---FAQL-----------SAIVDGDPPT  229 (286)
T ss_pred             ccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhhH---HHHH-----------HHHhhcCCCC
Confidence                               125689999999999999999999865332110   0000           0111111122


Q ss_pred             CCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          545 LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       545 l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                          .+.+....+.+++.+||+.+|++||++.|++..
T Consensus       230 ----~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~  262 (286)
T cd06622         230 ----LPSGYSDDAQDFVAKCLNKIPNRRPTYAQLLEH  262 (286)
T ss_pred             ----CCcccCHHHHHHHHHHcccCcccCCCHHHHhcC
Confidence                233345567899999999999999999999985

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.96  E-value=2e-28  Score=252.13  Aligned_cols=222  Identities=22%  Similarity=0.343  Sum_probs=159.5

Q ss_pred             ceEEEEEE--CCeEEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      +.||+|..  +|+.||+|.++.        .+.+|++++++++|+||+++.+++... +..++|+||+. ++|.+++...
T Consensus        19 ~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~-~~~~lv~e~~~-~~l~~~~~~~   96 (291)
T cd07870          19 ATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTK-ETLTFVFEYMH-TDLAQYMIQH   96 (291)
T ss_pred             EEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecC-CeEEEEEeccc-CCHHHHHHhC
Confidence            48999986  689999998752        467899999999999999999998754 47899999996 6888777543


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                      ..         .+.+.++..++.|++.||.|||+++   ++||||||+||+++.++++||+|||+++...          
T Consensus        97 ~~---------~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~  164 (291)
T cd07870          97 PG---------GLHPYNVRLFMFQLLRGLAYIHGQH---ILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTYSSEV  164 (291)
T ss_pred             CC---------CCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChHHEEEcCCCcEEEeccccccccCCCCCCCCCcc
Confidence            32         2788889999999999999999998   9999999999999999999999999875321          


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH--HH--HHHHHhhhcCCc
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE--EK--REERLRNWMDPN  544 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~--~~--~~~~~~~~~dp~  544 (615)
                                    ...+.++|||||||++|||++|+.||........  ........+...  ..  ....+.+.....
T Consensus       165 ~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (291)
T cd07870         165 VTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFE--QLEKIWTVLGVPTEDTWPGVSKLPNYKPEW  242 (291)
T ss_pred             ccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHH--HHHHHHHHcCCCChhhhhhhhhcccccchh
Confidence                          1134578999999999999999999975432111  111111110000  00  000000000000


Q ss_pred             C----CCCC-----ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          545 L----ESFY-----PIDGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       545 l----~~~~-----~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                      .    ....     .......+.+++.+|++.||.+|||+.|++.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~  287 (291)
T cd07870         243 FLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALL  287 (291)
T ss_pred             ccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHhc
Confidence            0    0000     0012346789999999999999999999875

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.96  E-value=2.2e-28  Score=250.43  Aligned_cols=209  Identities=19%  Similarity=0.378  Sum_probs=157.7

Q ss_pred             ceEEEEEE--CCeEEEEEEccH--------HHHHHHHH-HHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE--------DVTEELRI-LQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~--------~~~~Ei~~-l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.||++..  +|+.||+|+++.        ++..|+.+ ++.++|+||+++++++... +..+++|||++ |+|.+++..
T Consensus        15 g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~-~~~~lv~e~~~-~~l~~~l~~   92 (283)
T cd06617          15 GVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFRE-GDVWICMEVMD-TSLDKFYKK   92 (283)
T ss_pred             eEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecC-CcEEEEhhhhc-ccHHHHHHH
Confidence            58999987  689999998752        24456665 5566999999999998754 47999999996 689888765


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhC-CCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH-AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      .....      ..+++..+..++.|++.||+|||++ +   ++||||||+||+++.++.+||+|||+++...        
T Consensus        93 ~~~~~------~~~~~~~~~~~~~qi~~~l~~lH~~~~---i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~  163 (283)
T cd06617          93 VYDKG------LTIPEDILGKIAVSIVKALEYLHSKLS---VIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVAKTID  163 (283)
T ss_pred             hccCC------CCCCHHHHHHHHHHHHHHHHHHhhcCC---eecCCCCHHHEEECCCCCEEEeecccccccccccccccc
Confidence            32211      1489999999999999999999987 5   9999999999999999999999999875321        


Q ss_pred             ------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCc
Q 047629          483 ------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPN  544 (615)
Q Consensus       483 ------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~  544 (615)
                                        ..++.++|+||||+++|||++|+.|+........     .+..           ......+.
T Consensus       164 ~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~-----~~~~-----------~~~~~~~~  227 (283)
T cd06617         164 AGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQ-----QLKQ-----------VVEEPSPQ  227 (283)
T ss_pred             cCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCHH-----HHHH-----------HHhcCCCC
Confidence                              1135679999999999999999999864322110     0110           01111122


Q ss_pred             CCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          545 LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       545 l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +..   ......+.+++..||..+|.+||++.|+++.
T Consensus       228 ~~~---~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~  261 (283)
T cd06617         228 LPA---EKFSPEFQDFVNKCLKKNYKERPNYPELLQH  261 (283)
T ss_pred             CCc---cccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            211   1123457899999999999999999999874

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.96  E-value=1.4e-28  Score=256.24  Aligned_cols=225  Identities=18%  Similarity=0.268  Sum_probs=163.6

Q ss_pred             eEEEEEECCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          344 SVYRATIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       344 ~Vy~~~~~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      .||++..+|+.||||+++         ..+.+|++++++++|+||+++++++.+. ...+++|||+++|+|.+++.....
T Consensus        17 ~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~-~~~~~~~e~~~~~~l~~~l~~~~~   95 (314)
T cd08216          17 HLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVD-SELYVVSPLMAYGSCEDLLKTHFP   95 (314)
T ss_pred             EEEEecCCCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecC-CeEEEEEeccCCCCHHHHHHHhcc
Confidence            455555689999999875         2467899999999999999999988754 478999999999999999976432


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------------  482 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------------  482 (615)
                      .        .+++.....++.|++.||+|||+++   |+||||||+||+++.++.+|++|||.+....            
T Consensus        96 ~--------~~~~~~~~~~~~~l~~~L~~LH~~~---ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~  164 (314)
T cd08216          96 E--------GLPELAIAFILKDVLNALDYIHSKG---FIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDF  164 (314)
T ss_pred             c--------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCcceEEEecCCceEEecCccceeeccccccccccccc
Confidence            1        3788999999999999999999998   9999999999999999999999999764210            


Q ss_pred             --------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHh----HHH--HHHHH
Q 047629          483 --------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLK----VEE--KREER  536 (615)
Q Consensus       483 --------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~----~~~--~~~~~  536 (615)
                                          ..++.++|||||||++|||++|+.||........  ..........    ...  .....
T Consensus       165 ~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  242 (314)
T cd08216         165 PKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQM--LLEKVRGTVPCLLDKSTYPLYEDS  242 (314)
T ss_pred             cccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHH--HHHHHhccCccccccCchhhhcCC
Confidence                                1245689999999999999999999976432211  1111100000    000  00000


Q ss_pred             Hhh----hcCCcC----CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          537 LRN----WMDPNL----ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       537 ~~~----~~dp~l----~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      ...    ..++..    ...+.......+.+++..||+.||++|||++|++++-
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~p  296 (314)
T cd08216         243 MSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNHS  296 (314)
T ss_pred             cCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcCc
Confidence            000    011111    0111223345688999999999999999999999853

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=5.6e-30  Score=261.27  Aligned_cols=204  Identities=25%  Similarity=0.388  Sum_probs=168.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||||..  .++.||+|.+.        +++.+|+.+|.+++++||.+++|.+... ..+|++||||.+|++.+.|...
T Consensus        27 G~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g-~~LwiiMey~~gGsv~~lL~~~  105 (467)
T KOG0201|consen   27 GEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKG-TKLWIIMEYCGGGSVLDLLKSG  105 (467)
T ss_pred             ceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeec-ccHHHHHHHhcCcchhhhhccC
Confidence            58999998  68999999996        3577899999999999999999988754 3799999999999999999865


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                      ..          +++..+.-|++++..||.|||+++   .+|||||+.|||+..++.+|++|||.+...+          
T Consensus       106 ~~----------~~E~~i~~ilre~l~~l~ylH~~~---kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr~tfv  172 (467)
T KOG0201|consen  106 NI----------LDEFEIAVILREVLKGLDYLHSEK---KIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRRKTFV  172 (467)
T ss_pred             CC----------CccceeeeehHHHHHHhhhhhhcc---eecccccccceeEeccCcEEEEecceeeeeechhhcccccc
Confidence            42          567777788999999999999998   9999999999999999999999999985432          


Q ss_pred             -------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          483 -------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       483 -------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                   ..+..|+||||+|++.+||.+|.+|+..........                 .+.+---|.+.+. 
T Consensus       173 GTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmrvlf-----------------lIpk~~PP~L~~~-  234 (467)
T KOG0201|consen  173 GTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMRVLF-----------------LIPKSAPPRLDGD-  234 (467)
T ss_pred             ccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcceEEE-----------------eccCCCCCccccc-
Confidence                         236679999999999999999999987654311100                 1222233455443 


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                         ....+.+++..|++.||+.||++.+++++
T Consensus       235 ---~S~~~kEFV~~CL~k~P~~RpsA~~LLKh  263 (467)
T KOG0201|consen  235 ---FSPPFKEFVEACLDKNPEFRPSAKELLKH  263 (467)
T ss_pred             ---cCHHHHHHHHHHhhcCcccCcCHHHHhhh
Confidence               34458899999999999999999999985

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.96  E-value=2.1e-28  Score=252.23  Aligned_cols=223  Identities=23%  Similarity=0.324  Sum_probs=164.2

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCC-CcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQ-GNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~-~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||+|..  +|+.+|+|.++.         .+.+|++++.+++|+||+++++++...+ ...++|+||++ ++|.+++.
T Consensus        19 ~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~   97 (293)
T cd07843          19 GVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMVMEYVE-HDLKSLME   97 (293)
T ss_pred             eEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEEehhcC-cCHHHHHH
Confidence            48999998  588999998852         3567999999999999999999887542 47999999997 59999887


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------  483 (615)
                      ....         .+++.++..++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++....       
T Consensus        98 ~~~~---------~l~~~~~~~i~~qi~~aL~~LH~~~---i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~  165 (293)
T cd07843          98 TMKQ---------PFLQSEVKCLMLQLLSGVAHLHDNW---ILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLKPYTQ  165 (293)
T ss_pred             hccC---------CCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCCHHHEEECCCCcEEEeecCceeeccCCcccccc
Confidence            6432         3899999999999999999999998   99999999999999999999999998764311       


Q ss_pred             -----------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH-H-HHH----------
Q 047629          484 -----------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE-E-KRE----------  534 (615)
Q Consensus       484 -----------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~-~-~~~----------  534 (615)
                                       ..+.++|+||||+++|||++|+.|+.........   ..+....... . ...          
T Consensus       166 ~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (293)
T cd07843         166 LVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQL---NKIFKLLGTPTEKIWPGFSELPGAKK  242 (293)
T ss_pred             ccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChHHHH---HHHHHHhCCCchHHHHHhhccchhcc
Confidence                             1346799999999999999999998754421111   1111100000 0 000          


Q ss_pred             HHHhhhcCCcCCCCCChH-HHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          535 ERLRNWMDPNLESFYPID-GALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       535 ~~~~~~~dp~l~~~~~~~-~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..........+...++.. ....+.++++.|++.||++|||+.|+++.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~~  290 (293)
T cd07843         243 KTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDALKH  290 (293)
T ss_pred             cccccccchhhhccccccCCChHHHHHHHHHhccCccccCCHHHHhcC
Confidence            000000011111222222 34567899999999999999999999863

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.96  E-value=1.9e-28  Score=248.24  Aligned_cols=211  Identities=27%  Similarity=0.458  Sum_probs=164.5

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      +.||++..  +++.+|+|.+.        ..+.+|++++++++|+||+++++++... +..++++||+++++|.+++...
T Consensus        15 ~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~~   93 (265)
T cd06605          15 GVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNN-GDISICMEYMDGGSLDKILKEV   93 (265)
T ss_pred             eEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecC-CEEEEEEEecCCCcHHHHHHHc
Confidence            57999988  58999999875        2467899999999999999999998754 5799999999999999999765


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHh-CCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE-HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------  482 (615)
                      ..         .+++..+.+++.|++.||+|||+ .+   ++|+||||+||++++++.+||+|||.+....         
T Consensus        94 ~~---------~~~~~~~~~~~~~l~~~l~~lH~~~~---i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~  161 (265)
T cd06605          94 QG---------RIPERILGKIAVAVLKGLTYLHEKHK---IIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKTFVG  161 (265)
T ss_pred             cC---------CCCHHHHHHHHHHHHHHHHHHcCCCC---eecCCCCHHHEEECCCCCEEEeecccchhhHHHHhhcccC
Confidence            32         38899999999999999999999 76   9999999999999999999999999875321         


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  ...+.++||||||+++|||++|+.|+......... ....+.           .+.....+.+...  
T Consensus       162 ~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~-~~~~~~-----------~~~~~~~~~~~~~--  227 (265)
T cd06605         162 TSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDG-IFELLQ-----------YIVNEPPPRLPSG--  227 (265)
T ss_pred             ChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccccccc-HHHHHH-----------HHhcCCCCCCChh--
Confidence                        12456899999999999999999998754321110 011111           1111111122111  


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       .....+.+++..||..||++||++.|++..
T Consensus       228 -~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  257 (265)
T cd06605         228 -KFSPDFQDFVNLCLIKDPRERPSYKELLEH  257 (265)
T ss_pred             -hcCHHHHHHHHHHcCCCchhCcCHHHHhhC
Confidence             134458899999999999999999999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=6.8e-29  Score=260.81  Aligned_cols=203  Identities=17%  Similarity=0.224  Sum_probs=155.5

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhc---CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRI---NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l---~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||++..  +|+.||||++...          +..|..++.+.   +||||+++++++.+. ...++||||+++|+|.+
T Consensus         7 g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~-~~~~lv~e~~~~g~L~~   85 (330)
T cd05586           7 GQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTD-SDLYLVTDYMSGGELFW   85 (330)
T ss_pred             eEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecC-CeEEEEEcCCCCChHHH
Confidence            48999987  6899999998532          23466666665   699999999988754 47999999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++....          .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...     
T Consensus        86 ~l~~~~----------~~~~~~~~~~~~qil~al~~LH~~~---ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~  152 (330)
T cd05586          86 HLQKEG----------RFSEDRAKFYIAELVLALEHLHKYD---IVYRDLKPENILLDATGHIALCDFGLSKANLTDNKT  152 (330)
T ss_pred             HHHhcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCC
Confidence            987543          2889999999999999999999998   9999999999999999999999999985420     


Q ss_pred             -------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCC
Q 047629          483 -------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDP  543 (615)
Q Consensus       483 -------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp  543 (615)
                                         ..++.++|||||||++|||++|+.||......   ..+.   ..          ..  .+.
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~~---~~~~---~i----------~~--~~~  214 (330)
T cd05586         153 TNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQ---QMYR---NI----------AF--GKV  214 (330)
T ss_pred             ccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCHH---HHHH---HH----------Hc--CCC
Confidence                               11456899999999999999999998654311   1110   00          00  011


Q ss_pred             cCCCCCChHHHHHHHHHHHHhhhcCCCCCC----CHHHHHH
Q 047629          544 NLESFYPIDGALSLATLARACTMDKSLSRP----NMAEVVF  580 (615)
Q Consensus       544 ~l~~~~~~~~~~~l~~l~~~C~~~dP~~RP----sm~ev~~  580 (615)
                      .+..   ......+.+++.+|++.||.+||    ++.|+++
T Consensus       215 ~~~~---~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~ll~  252 (330)
T cd05586         215 RFPK---NVLSDEGRQFVKGLLNRNPQHRLGAHRDAVELKE  252 (330)
T ss_pred             CCCC---ccCCHHHHHHHHHHcCCCHHHCCCCCCCHHHHhc
Confidence            1111   11234568999999999999998    4666655

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.96  E-value=3.3e-28  Score=244.90  Aligned_cols=207  Identities=29%  Similarity=0.500  Sum_probs=163.3

Q ss_pred             ceEEEEEECC------eEEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATIDG------KVLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~~g------~~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||++....      ..||+|.++.        .+..|++++.+++|+||+++++++.+. +..+++|||+++++|.++
T Consensus        13 g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-~~~~~i~e~~~~~~l~~~   91 (258)
T smart00219       13 GEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEE-EPLMIVMEYMEGGDLLDY   91 (258)
T ss_pred             cceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCC-CeeEEEEeccCCCCHHHH
Confidence            5899999843      8899999862        467899999999999999999998764 479999999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      +......        .+++.++..++.|++.||+|||+.+   ++||||||+||+++.++.+|++|||+++...      
T Consensus        92 ~~~~~~~--------~~~~~~~~~~~~ql~~~l~~lh~~~---~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~  160 (258)
T smart00219       92 LRKNRPK--------ELSLSDLLSFALQIARGMEYLESKN---FIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYK  160 (258)
T ss_pred             HHhhhhc--------cCCHHHHHHHHHHHHHHHHHHhcCC---eeecccccceEEEccCCeEEEcccCCceecccccccc
Confidence            9764321        1899999999999999999999998   9999999999999999999999999985331      


Q ss_pred             ------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCC
Q 047629          483 ------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDP  543 (615)
Q Consensus       483 ------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp  543 (615)
                                        ...+.++||||+|++++||++ |+.|+......   .....              +....- 
T Consensus       161 ~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~~---~~~~~--------------~~~~~~-  222 (258)
T smart00219      161 KKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSNE---EVLEY--------------LKKGYR-  222 (258)
T ss_pred             cccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCHH---HHHHH--------------HhcCCC-
Confidence                              113568999999999999998 77787643211   11100              000000 


Q ss_pred             cCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          544 NLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       544 ~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                         ...+......+.+++.+|++.||++|||+.|+++.|
T Consensus       223 ---~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      223 ---LPKPENCPPEIYKLMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             ---CCCCCcCCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence               111222445688999999999999999999998764

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.96  E-value=1.5e-28  Score=259.45  Aligned_cols=221  Identities=23%  Similarity=0.341  Sum_probs=159.0

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCC-----CcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQ-----GNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~-----~~~~lV~E~~~~GsL~  406 (615)
                      |.||++..  +++.||||+++.         .+.+|++++++++|+||+++++++....     ...++++|++ +++|.
T Consensus        29 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~  107 (343)
T cd07878          29 GSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENFNEVYLVTNLM-GADLN  107 (343)
T ss_pred             eEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccccCcEEEEeecC-CCCHH
Confidence            48999986  678999999852         3557999999999999999998765321     2468999988 67999


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC---
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN---  483 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~---  483 (615)
                      +++...           .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++....   
T Consensus       108 ~~~~~~-----------~l~~~~~~~i~~qi~~aL~~LH~~~---ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  173 (343)
T cd07878         108 NIVKCQ-----------KLSDEHVQFLIYQLLRGLKYIHSAG---IIHRDLKPSNVAVNEDCELRILDFGLARQADDEMT  173 (343)
T ss_pred             HHHhcC-----------CCCHHHHHHHHHHHHHHHHHHHHCC---eecccCChhhEEECCCCCEEEcCCccceecCCCcC
Confidence            888642           2889999999999999999999998   99999999999999999999999999864311   


Q ss_pred             ------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH------HHHHHHHhh
Q 047629          484 ------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE------EKREERLRN  539 (615)
Q Consensus       484 ------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~  539 (615)
                                        .++.++|||||||++|||++|+.||......+.   ...+.......      .........
T Consensus       174 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (343)
T cd07878         174 GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQ---LKRIMEVVGTPSPEVLKKISSEHARK  250 (343)
T ss_pred             CccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHH---HHHHHHHhCCCCHHHHHhcchhhHHH
Confidence                              245689999999999999999999865432111   11111100000      000000000


Q ss_pred             hcC--CcCCCC----CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          540 WMD--PNLESF----YPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       540 ~~d--p~l~~~----~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+.  +.....    ........+.+|+.+|++.||.+|||+.|++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~h  298 (343)
T cd07878         251 YIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALAH  298 (343)
T ss_pred             HhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            000  000000    000112346899999999999999999999976

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.96  E-value=1.8e-28  Score=253.78  Aligned_cols=205  Identities=21%  Similarity=0.342  Sum_probs=162.3

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      +.||++..  +++.||+|.+.       +.+.+|+.++.+++|+||+++++++... +..++|+||+++|+|..++... 
T Consensus        35 g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~-~~~~iv~e~~~~~~L~~~~~~~-  112 (297)
T cd06659          35 GIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVG-EELWVLMEFLQGGALTDIVSQT-  112 (297)
T ss_pred             eeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeC-CeEEEEEecCCCCCHHHHHhhc-
Confidence            57999886  68999999974       3477899999999999999999988754 4799999999999999987542 


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                                .+++.++..++.|++.||+|||+.+   ++||||||+||+++.++.+||+|||++....           
T Consensus       113 ----------~~~~~~~~~~~~qi~~~L~~LH~~~---ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~  179 (297)
T cd06659         113 ----------RLNEEQIATVCESVLQALCYLHSQG---VIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVG  179 (297)
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHeEEccCCcEEEeechhHhhcccccccccceec
Confidence                      2889999999999999999999998   9999999999999999999999999875321           


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  ...+.++|||||||++|||++|+.|+......+.      +.           .+.....+...  ..
T Consensus       180 ~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~------~~-----------~~~~~~~~~~~--~~  240 (297)
T cd06659         180 TPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQA------MK-----------RLRDSPPPKLK--NA  240 (297)
T ss_pred             CccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH------HH-----------HHhccCCCCcc--cc
Confidence                        1245689999999999999999999875332111      00           01111111111  11


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ......+.+++..|++.+|++||++.|+++.
T Consensus       241 ~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~~  271 (297)
T cd06659         241 HKISPVLRDFLERMLTREPQERATAQELLDH  271 (297)
T ss_pred             CCCCHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence            1223457899999999999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=3.9e-28  Score=253.17  Aligned_cols=206  Identities=23%  Similarity=0.301  Sum_probs=160.7

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||++..  +|+.+|+|.+..          .+..|++++.+++|+||+++++.+.+. ...++||||+++|+|.+++.
T Consensus        15 g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~   93 (316)
T cd05574          15 GRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTE-TYLCLVMDYCPGGELFRLLQ   93 (316)
T ss_pred             EEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecC-CEEEEEEEecCCCCHHHHHH
Confidence            48999987  579999998852          366799999999999999999998754 47899999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      .....        .+++..+..++.|++.||+|||+.+   ++||||||+||+++.++.++|+|||++....        
T Consensus        94 ~~~~~--------~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~  162 (316)
T cd05574          94 RQPGK--------CLSEEVARFYAAEVLLALEYLHLLG---IVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSK  162 (316)
T ss_pred             hCCCC--------ccCHHHHHHHHHHHHHHHHHHHHCC---eeccCCChHHeEEcCCCCEEEeecchhhccccccccccc
Confidence            54321        3899999999999999999999998   9999999999999999999999999874321        


Q ss_pred             --------------------------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHH
Q 047629          483 --------------------------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAV  518 (615)
Q Consensus       483 --------------------------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~  518 (615)
                                                                  ...+.++||||||+++|||++|+.|+........  
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~--  240 (316)
T cd05574         163 ALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRDET--  240 (316)
T ss_pred             ccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCchHHH--
Confidence                                                        1134578999999999999999999875432111  


Q ss_pred             HHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCC----HHHHHH
Q 047629          519 LWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPN----MAEVVF  580 (615)
Q Consensus       519 l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPs----m~ev~~  580 (615)
                                        +.+..+....-.........+.+++.+||+.||++||+    +.|++.
T Consensus       241 ------------------~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~  288 (316)
T cd05574         241 ------------------FSNILKKEVTFPGSPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQ  288 (316)
T ss_pred             ------------------HHHHhcCCccCCCccccCHHHHHHHHHHccCCHhHCCCchhhHHHHHc
Confidence                              01111111110011113456899999999999999999    555554

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.96  E-value=1.6e-28  Score=261.53  Aligned_cols=220  Identities=21%  Similarity=0.315  Sum_probs=159.7

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCC-----CcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQ-----GNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~-----~~~~lV~E~~~~GsL~  406 (615)
                      |.||++..  .++.||||++..         .+.+|+.+++.++|+||+++++++...+     ...++||||+++ +|.
T Consensus        38 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~  116 (364)
T cd07875          38 GIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDA-NLC  116 (364)
T ss_pred             eEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecccccccccCeEEEEEeCCCC-CHH
Confidence            48999986  688999999852         3668999999999999999999875322     247999999975 787


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC---
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN---  483 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~---  483 (615)
                      +++..            .+++.++..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++....   
T Consensus       117 ~~~~~------------~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~  181 (364)
T cd07875         117 QVIQM------------ELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM  181 (364)
T ss_pred             HHHHh------------cCCHHHHHHHHHHHHHHHHHHhhCC---eecCCCCHHHEEECCCCcEEEEeCCCccccCCCCc
Confidence            77742            2788999999999999999999998   99999999999999999999999999864321   


Q ss_pred             -------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhH-----HHHHHHHHhh
Q 047629          484 -------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV-----EEKREERLRN  539 (615)
Q Consensus       484 -------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~  539 (615)
                                         .++.++|||||||++|||++|+.||......+   .+..+...+..     .......+..
T Consensus       182 ~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (364)
T cd07875         182 MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHID---QWNKVIEQLGTPCPEFMKKLQPTVRT  258 (364)
T ss_pred             ccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHhcCCCCHHHHHhhhHHHHH
Confidence                               24568999999999999999999997544211   11111111000     0000000011


Q ss_pred             hcC--CcCC----------------CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          540 WMD--PNLE----------------SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       540 ~~d--p~l~----------------~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+.  |...                ..........+.+++.+|++.||.+|||+.|++++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~h  318 (364)
T cd07875         259 YVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH  318 (364)
T ss_pred             HHhhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence            100  0000                00111123467899999999999999999999886

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.96  E-value=2.7e-28  Score=256.61  Aligned_cols=209  Identities=19%  Similarity=0.225  Sum_probs=157.2

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  .++.+|+|.+.+          .+.+|+.++..++|+||+++.+++.+. ...++||||+++|+|.+++.
T Consensus        15 g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~lv~ey~~~g~L~~~l~   93 (332)
T cd05623          15 GEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDE-NNLYLVMDYYVGGDLLTLLS   93 (332)
T ss_pred             eEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecC-CEEEEEEeccCCCcHHHHHH
Confidence            58999988  578899999853          266789999999999999999988754 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ....         .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...        
T Consensus        94 ~~~~---------~l~~~~~~~~~~qi~~al~~lH~~~---iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~~~~  161 (332)
T cd05623          94 KFED---------RLPEDMARFYLAEMVIAIDSVHQLH---YVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSS  161 (332)
T ss_pred             HhcC---------CCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHEEECCCCCEEEeecchheecccCCcceec
Confidence            6432         3889999999999999999999998   9999999999999999999999999874310        


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                           ..++.++|||||||++|||++|+.||......+      .+....          ....
T Consensus       162 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~~~~------~~~~i~----------~~~~  225 (332)
T cd05623         162 VAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESLVE------TYGKIM----------NHKE  225 (332)
T ss_pred             ccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCCHHH------HHHHHh----------CCCc
Confidence                                 113568999999999999999999997543111      011110          0000


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhc--CCCCCCCHHHHHHH
Q 047629          542 DPNLESFYPIDGALSLATLARACTMD--KSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~--dP~~RPsm~ev~~~  581 (615)
                      ...... ...+....+.+++.+|+..  ++..|+++.|++++
T Consensus       226 ~~~~p~-~~~~~s~~~~~li~~ll~~~~~r~~r~~~~~~~~h  266 (332)
T cd05623         226 RFQFPA-QVTDVSEDAKDLIRRLICSREHRLGQNGIEDFKQH  266 (332)
T ss_pred             cccCCC-ccccCCHHHHHHHHHHccChhhhcCCCCHHHHhCC
Confidence            000100 0112334567788887754  44447899999876

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.96  E-value=4e-28  Score=245.71  Aligned_cols=206  Identities=20%  Similarity=0.287  Sum_probs=164.3

Q ss_pred             ceEEEEEEC--CeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATID--GKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~~--g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||++...  ++.+|+|.+..          .+.+|++++++++|+||+++++.+.+. ...++++||+++|+|.+++.
T Consensus         7 ~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~   85 (262)
T cd05572           7 GRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDK-KYIYMLMEYCLGGELWTILR   85 (262)
T ss_pred             eEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcC-CccEEEEecCCCCcHHHHHh
Confidence            489999984  89999998752          367799999999999999999988754 47899999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------  483 (615)
                      ...          .+++..+..++.|++.||.|||+.+   ++|+||||+||+++.++.+||+|||+++....       
T Consensus        86 ~~~----------~l~~~~~~~~~~~i~~~l~~lH~~~---~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~~~~~  152 (262)
T cd05572          86 DRG----------LFDEYTARFYIACVVLAFEYLHNRG---IIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWTF  152 (262)
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHhhCC---cccCCCCHHHEEEcCCCCEEEeeCCcccccCcccccccc
Confidence            643          2889999999999999999999987   99999999999999999999999999865422       


Q ss_pred             ---------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          484 ---------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       484 ---------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                     ..+.++|+||||+++|||++|+.|+........ ..                 ..+..+......
T Consensus       153 ~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-~~-----------------~~~~~~~~~~~~  214 (262)
T cd05572         153 CGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPM-EI-----------------YNDILKGNGKLE  214 (262)
T ss_pred             cCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCHH-HH-----------------HHHHhccCCCCC
Confidence                           134679999999999999999999976542111 00                 111111111223


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCC-----HHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPN-----MAEVVF  580 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPs-----m~ev~~  580 (615)
                      ++......+.+++..||+.+|++||+     ++|+++
T Consensus       215 ~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~~l~~  251 (262)
T cd05572         215 FPNYIDKAAKDLIKQLLRRNPEERLGNLKGGIKDIKK  251 (262)
T ss_pred             CCcccCHHHHHHHHHHccCChhhCcCCcccCHHHHhc
Confidence            34334567899999999999999999     566554

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=3.7e-28  Score=255.46  Aligned_cols=156  Identities=23%  Similarity=0.302  Sum_probs=134.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +++.||+|.+++          .+.+|+.++..++|+||+++++++.+. +..++||||+++|+|.+++.
T Consensus        15 g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~lv~e~~~g~~L~~~l~   93 (331)
T cd05597          15 GEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDE-NNLYLVMDYYVGGDLLTLLS   93 (331)
T ss_pred             eEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecC-CeEEEEEecCCCCcHHHHHH
Confidence            58999987  689999999853          256799999999999999999988754 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ....         .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||++....        
T Consensus        94 ~~~~---------~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~  161 (331)
T cd05597          94 KFED---------RLPEDMARFYLAEMVLAIDSVHQLG---YVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSN  161 (331)
T ss_pred             HhcC---------CCCHHHHHHHHHHHHHHHHHHHhCC---eEECCCCHHHEEECCCCCEEEEECCceeecCCCCCcccc
Confidence            5332         3889999999999999999999998   9999999999999999999999999874321        


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCC
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTT  511 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~  511 (615)
                                           ..++.++|||||||++|||++|+.||...
T Consensus       162 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~  211 (331)
T cd05597         162 VAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAE  211 (331)
T ss_pred             ceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCC
Confidence                                 11345799999999999999999999653

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.96  E-value=1.7e-28  Score=256.20  Aligned_cols=216  Identities=21%  Similarity=0.269  Sum_probs=166.6

Q ss_pred             ccccccccccc----ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhcCCCCcccEEEEEEcCCCcEEE
Q 047629          332 TMNLSEHYSIG----KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRINHANLVKLMGVSSDSQGNRFL  395 (615)
Q Consensus       332 t~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~l  395 (615)
                      .++|.-...||    |.||.+.-  +|+.+|+|++++.          +..|-++|...++++||+|+-.+.+.+ .+||
T Consensus       140 ~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~-~LYL  218 (550)
T KOG0605|consen  140 LDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKE-YLYL  218 (550)
T ss_pred             cccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCC-eeEE
Confidence            34555555565    58998886  7999999999743          568999999999999999998776554 8999


Q ss_pred             EEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeec
Q 047629          396 VYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF  475 (615)
Q Consensus       396 V~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  475 (615)
                      ||||.|+|++..+|....          .|+......++.+.+.|++-||.++   +|||||||+|+|||..|.+||+||
T Consensus       219 iMEylPGGD~mTLL~~~~----------~L~e~~arfYiaE~vlAI~~iH~~g---yIHRDIKPdNlLiD~~GHiKLSDF  285 (550)
T KOG0605|consen  219 IMEYLPGGDMMTLLMRKD----------TLTEDWARFYIAETVLAIESIHQLG---YIHRDIKPDNLLIDAKGHIKLSDF  285 (550)
T ss_pred             EEEecCCccHHHHHHhcC----------cCchHHHHHHHHHHHHHHHHHHHcC---cccccCChhheeecCCCCEeeccc
Confidence            999999999999998765          3899999999999999999999999   999999999999999999999999


Q ss_pred             CCCCCCCC----------------------------------------------------------------------CC
Q 047629          476 SLAAPATN----------------------------------------------------------------------DV  485 (615)
Q Consensus       476 Gla~~~~~----------------------------------------------------------------------~~  485 (615)
                      ||+.....                                                                      .+
T Consensus       286 GLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY  365 (550)
T KOG0605|consen  286 GLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGY  365 (550)
T ss_pred             cccchhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCC
Confidence            99843200                                                                      02


Q ss_pred             CCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhh
Q 047629          486 MPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACT  565 (615)
Q Consensus       486 ~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~  565 (615)
                      ...+|.||+|||+||||.|-+||......+   .|..+..+       +..+..--        ..+...+..+|+.+|+
T Consensus       366 ~~~cDwWSLG~ImyEmLvGyPPF~s~tp~~---T~rkI~nw-------r~~l~fP~--------~~~~s~eA~DLI~rll  427 (550)
T KOG0605|consen  366 GKECDWWSLGCIMYEMLVGYPPFCSETPQE---TYRKIVNW-------RETLKFPE--------EVDLSDEAKDLITRLL  427 (550)
T ss_pred             CccccHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHH-------hhhccCCC--------cCcccHHHHHHHHHHh
Confidence            346899999999999999999998765432   22222111       11111111        1122256789999999


Q ss_pred             hcCCCCCCC---HHHHHH
Q 047629          566 MDKSLSRPN---MAEVVF  580 (615)
Q Consensus       566 ~~dP~~RPs---m~ev~~  580 (615)
                      . ||++|--   +.||-.
T Consensus       428 ~-d~~~RLG~~G~~EIK~  444 (550)
T KOG0605|consen  428 C-DPENRLGSKGAEEIKK  444 (550)
T ss_pred             c-CHHHhcCcccHHHHhc
Confidence            9 9999975   555544

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.96  E-value=5.6e-28  Score=244.25  Aligned_cols=207  Identities=27%  Similarity=0.412  Sum_probs=165.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      +.||++..  +|+.++||++.        ..+.+|++.+.+++|+|++++++++... +..++|+||+++++|.+++...
T Consensus        15 ~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~   93 (264)
T cd06623          15 GVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKE-GEISIVLEYMDGGSLADLLKKV   93 (264)
T ss_pred             eEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccC-CeEEEEEEecCCCcHHHHHHHc
Confidence            47999988  58999999865        3477899999999999999999998754 5799999999999999999764


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHh-CCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE-HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--------  483 (615)
                      .          .+++..+..++.|++.||.|||+ .+   ++||||+|+||+++.++.++|+|||++.....        
T Consensus        94 ~----------~l~~~~~~~~~~~l~~~l~~lh~~~~---~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~  160 (264)
T cd06623          94 G----------KIPEPVLAYIARQILKGLDYLHTKRH---IIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTF  160 (264)
T ss_pred             C----------CCCHHHHHHHHHHHHHHHHHHhccCC---CccCCCCHHHEEECCCCCEEEccCccceecccCCCcccce
Confidence            3          38999999999999999999999 87   99999999999999999999999998865321        


Q ss_pred             ---------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          484 ---------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       484 ---------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                     ..+.++||||||+++|||++|+.|+.............              .+.....+.+   
T Consensus       161 ~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~--------------~~~~~~~~~~---  223 (264)
T cd06623         161 VGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQ--------------AICDGPPPSL---  223 (264)
T ss_pred             eecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHH--------------HHhcCCCCCC---
Confidence                           13457999999999999999999987654211111110              1111111222   


Q ss_pred             CChH-HHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          549 YPID-GALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       549 ~~~~-~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       +.. ....+.+++..|++.+|++||++.|+++.
T Consensus       224 -~~~~~~~~l~~li~~~l~~~p~~R~~~~~ll~~  256 (264)
T cd06623         224 -PAEEFSPEFRDFISACLQKDPKKRPSAAELLQH  256 (264)
T ss_pred             -CcccCCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence             222 44568999999999999999999999885

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.96  E-value=5.3e-28  Score=247.67  Aligned_cols=221  Identities=19%  Similarity=0.353  Sum_probs=162.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      +.||+|..  +|+.||||+++        ..+.+|++++++++|+||+++++++.+. +..++||||+++ +|.+++...
T Consensus        14 ~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~-~l~~~~~~~   91 (284)
T cd07836          14 ATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTE-NKLMLVFEYMDK-DLKKYMDTH   91 (284)
T ss_pred             eEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeC-CcEEEEEecCCc-cHHHHHHhc
Confidence            48999997  68999999875        2456899999999999999999998764 478999999984 899988654


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                      ...       ..+++.++..++.|++.||.|||+.+   ++||||||+||++++++.+|++|||+++...          
T Consensus        92 ~~~-------~~~~~~~~~~~~~qi~~~l~~lH~~~---i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~  161 (284)
T cd07836          92 GVR-------GALDPNTVKSFTYQLLKGIAFCHENR---VLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNTFSNEV  161 (284)
T ss_pred             CCC-------CCcCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEECCCCcEEEeecchhhhhcCCcccccccc
Confidence            321       13899999999999999999999998   9999999999999999999999999885321          


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH-HHHHHHHhhhcCCcCCC
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE-EKREERLRNWMDPNLES  547 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~dp~l~~  547 (615)
                                    ...+.++|||||||++|||++|+.|+......+..   ..+....... ...-..+...  +.+..
T Consensus       162 ~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~  236 (284)
T cd07836         162 VTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQL---LKIFRIMGTPTESTWPGISQL--PEYKP  236 (284)
T ss_pred             ccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHH---HHHHHHhCCCChhhHHHHhcC--chhcc
Confidence                          11356799999999999999999998755432211   1111110000 0000000000  01111


Q ss_pred             CC-----------ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          548 FY-----------PIDGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       548 ~~-----------~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                      .+           .......+.+++..|++.||.+||++.|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  280 (284)
T cd07836         237 TFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQ  280 (284)
T ss_pred             cccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            11           1122346789999999999999999999985

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.96  E-value=1.9e-28  Score=247.09  Aligned_cols=210  Identities=29%  Similarity=0.485  Sum_probs=162.7

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.||++..  +++.+|+|.+..         ...+|+.++++++|+||+++++++.+. ...++||||+++++|.+++..
T Consensus        13 g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~-~~~~~v~~~~~~~~L~~~l~~   91 (260)
T PF00069_consen   13 GTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDD-NYLYIVMEYCPGGSLQDYLQK   91 (260)
T ss_dssp             EEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEES-SEEEEEEEEETTEBHHHHHHH
T ss_pred             EEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccc-ccccccccccccccccccccc
Confidence            58999998  578899999862         124589999999999999999998764 478999999999999999983


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC----------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA----------  481 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~----------  481 (615)
                      ..          .+++..+..++.|++.||.|||+++   ++||||||+||++++++.++|+|||.+...          
T Consensus        92 ~~----------~~~~~~~~~~~~qi~~~L~~Lh~~~---i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~~  158 (260)
T PF00069_consen   92 NK----------PLSEEEILKIAYQILEALAYLHSKG---IVHRDIKPENILLDENGEVKLIDFGSSVKLSENNENFNPF  158 (260)
T ss_dssp             HS----------SBBHHHHHHHHHHHHHHHHHHHHTT---EEESSBSGGGEEESTTSEEEESSGTTTEESTSTTSEBSSS
T ss_pred             cc----------ccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccc
Confidence            22          3899999999999999999999998   999999999999999999999999998531          


Q ss_pred             --------------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          482 --------------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       482 --------------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                    ....+.++||||+|+++|||++|+.|+...........   +......      .....    .  
T Consensus       159 ~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~---~~~~~~~------~~~~~----~--  223 (260)
T PF00069_consen  159 VGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDDQLEI---IEKILKR------PLPSS----S--  223 (260)
T ss_dssp             SSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHH---HHHHHHT------HHHHH----T--
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccchhhhhh---hhhcccc------ccccc----c--
Confidence                          01245689999999999999999999986521111111   1111100      00000    0  


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .........+.+++..|++.||++||++.|+++.
T Consensus       224 ~~~~~~~~~l~~li~~~l~~~p~~R~~~~~l~~~  257 (260)
T PF00069_consen  224 QQSREKSEELRDLIKKMLSKDPEQRPSAEELLKH  257 (260)
T ss_dssp             TSHTTSHHHHHHHHHHHSSSSGGGSTTHHHHHTS
T ss_pred             cccchhHHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            0000112578999999999999999999999863

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.96  E-value=6.5e-29  Score=259.72  Aligned_cols=206  Identities=23%  Similarity=0.357  Sum_probs=169.2

Q ss_pred             eEEEEEECCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          344 SVYRATIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       344 ~Vy~~~~~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      ..++.+.+++.+++|++.         .....|+.++++++|||||.+.+.+.+++...+|||+|++||+|.+.+...+.
T Consensus        21 ~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm~Y~eGg~l~~~i~~~k~  100 (426)
T KOG0589|consen   21 LLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVMEYCEGGDLAQLIKEQKG  100 (426)
T ss_pred             hhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEEeecCCCCHHHHHHHHhh
Confidence            345566688899999885         35788999999999999999999987655338999999999999999987663


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC----------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND----------  484 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~----------  484 (615)
                              ..++..++..|+.|++.|+.|||++.   |+|||||+.||++..+..+||+|||+|+.....          
T Consensus       101 --------~~f~E~~i~~~~~Q~~~av~ylH~~~---iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~~a~tvvGT  169 (426)
T KOG0589|consen  101 --------VLFPEERILKWFVQILLAVNYLHENR---VLHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDSLASTVVGT  169 (426)
T ss_pred             --------ccccHHHHHHHHHHHHHHHHHHHhhh---hhcccchhhhhhccccCceeecchhhhhhcCCchhhhheecCC
Confidence                    24899999999999999999999887   999999999999999999999999999876332          


Q ss_pred             -------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCCh
Q 047629          485 -------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPI  551 (615)
Q Consensus       485 -------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~  551 (615)
                                   +..|+|+||+||++|||++=+++|...+-..   +..             ......++     ..|.
T Consensus       170 p~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m~~---Li~-------------ki~~~~~~-----Plp~  228 (426)
T KOG0589|consen  170 PYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNMSE---LIL-------------KINRGLYS-----PLPS  228 (426)
T ss_pred             CcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccchHH---HHH-------------HHhhccCC-----CCCc
Confidence                         4569999999999999999999997654211   111             11122222     2344


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          552 DGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       552 ~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ....++..+++.|+..+|..||++.+++.+
T Consensus       229 ~ys~el~~lv~~~l~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  229 MYSSELRSLVKSMLRKNPEHRPSALELLRR  258 (426)
T ss_pred             cccHHHHHHHHHHhhcCCccCCCHHHHhhC
Confidence            556678999999999999999999999987

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.96  E-value=6e-28  Score=246.87  Aligned_cols=222  Identities=23%  Similarity=0.292  Sum_probs=161.8

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH--------HHHHHHHHHhcC-CCCcccEEEEEEcCC-CcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKED--------VTEELRILQRIN-HANLVKLMGVSSDSQ-GNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~--------~~~Ei~~l~~l~-H~niv~l~g~~~~~~-~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||+|..  +++.+|+|+++..        ..+|+.++.++. |+|++++++++.+.. +..++|+||++ |+|.+++.
T Consensus        13 ~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~   91 (282)
T cd07831          13 SEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFELMD-MNLYELIK   91 (282)
T ss_pred             ceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEecCC-ccHHHHHH
Confidence            58999987  6899999988642        346888999885 999999999987642 47899999997 68888887


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ....         .++|.++..++.|++.||+|||+.+   ++||||||+||+++. +.+||+|||+++...        
T Consensus        92 ~~~~---------~~~~~~~~~~~~qi~~~L~~LH~~~---i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~~~~~~  158 (282)
T cd07831          92 GRKR---------PLPEKRVKSYMYQLLKSLDHMHRNG---IFHRDIKPENILIKD-DILKLADFGSCRGIYSKPPYTEY  158 (282)
T ss_pred             hccC---------CCCHHHHHHHHHHHHHHHHHHHHCC---ceecccCHHHEEEcC-CCeEEEecccccccccCCCcCCC
Confidence            5432         3899999999999999999999998   999999999999999 999999999885431        


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHH-HHHHH-----hhhc
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEK-REERL-----RNWM  541 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~-----~~~~  541 (615)
                                     ...+.++|||||||++|||++|+.|+......+   .............. .....     ....
T Consensus       159 ~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (282)
T cd07831         159 ISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELD---QIAKIHDVLGTPDAEVLKKFRKSRHMNYN  235 (282)
T ss_pred             CCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHH---HHHHHHHHcCCCCHHHHHhhccccccccc
Confidence                           113568999999999999999999996543211   11111111110000 00000     0000


Q ss_pred             CCcCCC----CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 DPNLES----FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp~l~~----~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+....    .........+.+++.+||+.+|++||++.|+++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~  279 (282)
T cd07831         236 FPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALRH  279 (282)
T ss_pred             CcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhhC
Confidence            000000    0011235678999999999999999999999864

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.96  E-value=3.4e-28  Score=249.19  Aligned_cols=222  Identities=24%  Similarity=0.302  Sum_probs=164.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||+|..  +|+.||+|++.         ..+.+|+.++++++|+||+++++++.+. ...++|+||+ +++|.+++..
T Consensus        14 ~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~~v~e~~-~~~L~~~~~~   91 (286)
T cd07832          14 GIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHG-SGFVLVMEYM-PSDLSEVLRD   91 (286)
T ss_pred             cEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecC-CeeEEEeccc-CCCHHHHHHh
Confidence            47999987  68999999885         3477899999999999999999998754 4789999999 9999999875


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--------  483 (615)
                      ...         .+++.++..++.|++.||+|||+++   ++|+||||+||+++.++.++++|||++.....        
T Consensus        92 ~~~---------~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~  159 (286)
T cd07832          92 EER---------PLPEAQVKSYMRMLLKGVAYMHANG---IMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSH  159 (286)
T ss_pred             cCC---------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCcCHHHEEEcCCCcEEEeeeeecccccCCCCCcccc
Confidence            442         3899999999999999999999998   99999999999999999999999998754311        


Q ss_pred             -----------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHH-HHHHHhh------
Q 047629          484 -----------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEK-REERLRN------  539 (615)
Q Consensus       484 -----------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~------  539 (615)
                                       ..+.++||||+|++++||++|+.++....+.+   .+..+...+..... ....+.+      
T Consensus       160 ~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (286)
T cd07832         160 QVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIE---QLAIVFRTLGTPNEETWPGLTSLPDYNK  236 (286)
T ss_pred             ccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHHH---HHHHHHHHcCCCChHHHhhccCcchhhc
Confidence                             13568999999999999999977775433211   11111111110000 0000000      


Q ss_pred             hcCCcCC----CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          540 WMDPNLE----SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       540 ~~dp~l~----~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ...+.-.    .+...+....+.+++.+|++.+|++||++++++.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~h  282 (286)
T cd07832         237 ITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALRH  282 (286)
T ss_pred             ccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence            0000000    00111234678999999999999999999999874

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.96  E-value=2.3e-28  Score=250.35  Aligned_cols=223  Identities=21%  Similarity=0.360  Sum_probs=164.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||+|..  +|+.||+|++.         ..+.+|++++++++|+|++++++++.+. +..+++|||++ ++|.+++..
T Consensus        13 ~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~-~~~~iv~e~~~-~~l~~~~~~   90 (283)
T cd07835          13 GVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSE-NKLYLVFEFLD-LDLKKYMDS   90 (283)
T ss_pred             eEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccC-CeEEEEEeccC-cCHHHHHhh
Confidence            48999987  78999999875         3467899999999999999999998754 47999999995 699999876


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------  482 (615)
                      ....        .+++..+..++.|++.||+|||+++   ++||||+|+||+++.++.+||+|||+++...         
T Consensus        91 ~~~~--------~~~~~~~~~~~~~i~~~L~~lH~~~---~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~  159 (283)
T cd07835          91 SPLT--------GLDPPLIKSYLYQLLQGIAYCHSHR---VLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTYTHE  159 (283)
T ss_pred             CCCC--------CCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCHHHEEEcCCCcEEEeecccccccCCCccccCcc
Confidence            5421        3899999999999999999999987   9999999999999999999999999875321         


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHH----------HHHHHH
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE----------KREERL  537 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~----------~~~~~~  537 (615)
                                     ...+.++||||||+++|||++|+.||.......  .+...+........          ......
T Consensus       160 ~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (283)
T cd07835         160 VVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEID--QLFRIFRTLGTPDEDVWPGVTSLPDYKPTF  237 (283)
T ss_pred             ccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHHHhCCCChHHhhhhhhchhhhhhc
Confidence                           013457999999999999999999987543211  11111110000000          000001


Q ss_pred             hhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          538 RNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       538 ~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..+..+.+ ..........+.+++.+|++.||.+||+++|+++.
T Consensus       238 ~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~  280 (283)
T cd07835         238 PKWARQDL-SKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQH  280 (283)
T ss_pred             ccccccch-hhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence            11111111 11112233467899999999999999999999853

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.96  E-value=3.5e-28  Score=244.94  Aligned_cols=206  Identities=23%  Similarity=0.377  Sum_probs=161.8

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||++..  +|..+|+|.+..         .+.+|++++++++|+||+++++.+.+ ++..++|+||+++++|.+++..
T Consensus        14 ~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~   92 (257)
T cd08225          14 GKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQE-NGRLFIVMEYCDGGDLMKRINR   92 (257)
T ss_pred             ceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheecc-CCeEEEEEecCCCCcHHHHHHh
Confidence            58999998  688999998742         46689999999999999999998865 4478999999999999999976


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC-cEEEeecCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF-KAKIANFSLAAPAT--------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-~~kl~DFGla~~~~--------  482 (615)
                      ....        .++|..+..++.|++.||.|||+.+   ++|+||||+||++++++ .+|++|||.+....        
T Consensus        93 ~~~~--------~~~~~~~~~~~~~l~~~l~~lh~~~---i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~  161 (257)
T cd08225          93 QRGV--------LFSEDQILSWFVQISLGLKHIHDRK---ILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAYT  161 (257)
T ss_pred             ccCC--------CCCHHHHHHHHHHHHHHHHHHHHCC---cccccCCHHHEEEcCCCCeEEecccccchhccCCcccccc
Confidence            4321        3799999999999999999999998   99999999999999885 56999999875431        


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ...+.++||||||+++|||++|+.|+......      +.+..          .......+    
T Consensus       162 ~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~------~~~~~----------~~~~~~~~----  221 (257)
T cd08225         162 CVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNLH------QLVLK----------ICQGYFAP----  221 (257)
T ss_pred             cCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccHH------HHHHH----------HhcccCCC----
Confidence                           11346899999999999999999998643211      01111          11111111    


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       .+......+.+++.+||+.+|++|||+.|++..
T Consensus       222 -~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~  254 (257)
T cd08225         222 -ISPNFSRDLRSLISQLFKVSPRDRPSITSILKR  254 (257)
T ss_pred             -CCCCCCHHHHHHHHHHhccChhhCcCHHHHhhC
Confidence             111223458899999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.96  E-value=7e-28  Score=247.47  Aligned_cols=207  Identities=27%  Similarity=0.422  Sum_probs=164.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      +.||++..  +++.+++|.++      ..+.+|++++++++|+|++++++++... ...++++||+++++|.+++.....
T Consensus        33 ~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~~  111 (286)
T cd06614          33 GEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDYYDSYLVG-DELWVVMEYMDGGSLTDIITQNFV  111 (286)
T ss_pred             eEEEEEEEccCCcEEEEEEEecCchhHHHHHHHHHHHHHCCCCCeeEEEEEEEEC-CEEEEEEeccCCCcHHHHHHHhcc
Confidence            47999998  48999999885      3577899999999999999999998765 479999999999999999987541


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------------  482 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------------  482 (615)
                               .+++..+..++.|++.||.|||+.+   ++|+||||+||+++.++.+||+|||++....            
T Consensus       112 ---------~l~~~~~~~i~~~i~~~L~~lH~~g---i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~  179 (286)
T cd06614         112 ---------RMNEPQIAYVCREVLQGLEYLHSQN---VIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGT  179 (286)
T ss_pred             ---------CCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCChhhEEEcCCCCEEECccchhhhhccchhhhccccCC
Confidence                     3899999999999999999999987   9999999999999999999999999764321            


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCCh
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPI  551 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~  551 (615)
                                 ...+.++|||||||++|||++|+.|+.........      ..          ...... +.+  ..+.
T Consensus       180 ~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~~~------~~----------~~~~~~-~~~--~~~~  240 (286)
T cd06614         180 PYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLRAL------FL----------ITTKGI-PPL--KNPE  240 (286)
T ss_pred             cccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHHHHH------HH----------HHhcCC-CCC--cchh
Confidence                       12456899999999999999999998643321100      00          000000 111  1111


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          552 DGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       552 ~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .....+.+++.+|++.+|.+||++.|+++.
T Consensus       241 ~~~~~l~~li~~~l~~~p~~Rpt~~~il~~  270 (286)
T cd06614         241 KWSPEFKDFLNKCLVKDPEKRPSAEELLQH  270 (286)
T ss_pred             hCCHHHHHHHHHHhccChhhCcCHHHHhhC
Confidence            234568899999999999999999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.96  E-value=7e-28  Score=247.77  Aligned_cols=205  Identities=23%  Similarity=0.378  Sum_probs=162.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      +.||++..  +++.+++|+++       +.+.+|+.++++++|+||+++++++... +..++++||+++++|.+++... 
T Consensus        33 g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~-~~~~~v~e~~~~~~L~~~~~~~-  110 (285)
T cd06648          33 GIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVG-DELWVVMEFLEGGALTDIVTHT-  110 (285)
T ss_pred             eEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcC-CeEEEEEeccCCCCHHHHHHhC-
Confidence            58999986  67899999874       2467899999999999999999988754 4789999999999999998762 


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                                .+++..+..++.|++.||+|||+++   ++||||||+||+++.++.+|++|||++....           
T Consensus       111 ----------~~~~~~~~~~~~ql~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~  177 (285)
T cd06648         111 ----------RMNEEQIATVCLAVLKALSFLHAQG---VIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVG  177 (285)
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCChhhEEEcCCCcEEEcccccchhhccCCcccccccC
Confidence                      2889999999999999999999998   9999999999999999999999999864321           


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  ..++.++|||||||++|||++|+.|+.....   ....   .           .+.....+.+..  +
T Consensus       178 ~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~---~~~~---~-----------~~~~~~~~~~~~--~  238 (285)
T cd06648         178 TPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPP---LQAM---K-----------RIRDNLPPKLKN--L  238 (285)
T ss_pred             CccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCH---HHHH---H-----------HHHhcCCCCCcc--c
Confidence                        1245689999999999999999999864321   1000   0           111111112111  1


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ......+.+++.+||+.+|++||++.|+++.
T Consensus       239 ~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~  269 (285)
T cd06648         239 HKVSPRLRSFLDRMLVRDPAQRATAAELLNH  269 (285)
T ss_pred             ccCCHHHHHHHHHHcccChhhCcCHHHHccC
Confidence            1233568999999999999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.96  E-value=7.7e-28  Score=243.65  Aligned_cols=211  Identities=26%  Similarity=0.350  Sum_probs=164.3

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      +.||+|..  +++.+|+|++.        ..+.+|+++++.++|+|++++.+.+... ...++|+||+++++|.+++...
T Consensus        15 ~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-~~~~iv~e~~~~~~l~~~~~~~   93 (267)
T cd06610          15 AVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVG-DELWLVMPYLSGGSLLDIMKSS   93 (267)
T ss_pred             eEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeC-CEEEEEEeccCCCcHHHHHHHh
Confidence            48999987  67899999874        3477899999999999999999988754 4789999999999999999764


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                      ...       ..+++.....++.|++.||.|||+.+   ++||||||+||++++++.+||+|||++....          
T Consensus        94 ~~~-------~~~~~~~~~~~~~ql~~al~~lh~~~---i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~  163 (267)
T cd06610          94 YPR-------GGLDEAIIATVLKEVLKGLEYLHSNG---QIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVR  163 (267)
T ss_pred             ccc-------CCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHhEEEcCCCCEEEcccchHHHhccCcccccccc
Confidence            321       13899999999999999999999998   9999999999999999999999999863221          


Q ss_pred             -----------------C-CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCc
Q 047629          483 -----------------N-DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPN  544 (615)
Q Consensus       483 -----------------~-~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~  544 (615)
                                       . ..+.++|||||||++|||++|+.|+........      +....           ....+.
T Consensus       164 ~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~------~~~~~-----------~~~~~~  226 (267)
T cd06610         164 KTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMKV------LMLTL-----------QNDPPS  226 (267)
T ss_pred             ccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccChhhh------HHHHh-----------cCCCCC
Confidence                             0 234579999999999999999999875432111      11100           001112


Q ss_pred             CCCCCC-hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          545 LESFYP-IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       545 l~~~~~-~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +..... ......+.+++..||+.||++||++.|+++.
T Consensus       227 ~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~~  264 (267)
T cd06610         227 LETGADYKKYSKSFRKMISLCLQKDPSKRPTAEELLKH  264 (267)
T ss_pred             cCCccccccccHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence            211111 1334567899999999999999999999863

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.96  E-value=8.1e-28  Score=247.73  Aligned_cols=203  Identities=26%  Similarity=0.325  Sum_probs=161.7

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||++..  +++.+|+|.++.          .+.+|++++++++|+||+++++++.+. ...++||||+++|+|.+++.
T Consensus        15 ~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~~v~e~~~~~~L~~~~~   93 (290)
T cd05580          15 GRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDD-SNLYLVMEYVPGGELFSHLR   93 (290)
T ss_pred             eEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcC-CeEEEEEecCCCCCHHHHHH
Confidence            48999987  689999998852          356799999999999999999998754 47899999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------  483 (615)
                      ...          .+++..+..++.|++.||.|||+.+   ++||||||+||+++.++.+||+|||+++....       
T Consensus        94 ~~~----------~l~~~~~~~~~~qil~~l~~lH~~~---i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~  160 (290)
T cd05580          94 KSG----------RFPEPVARFYAAQVVLALEYLHSLD---IVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRTYTLCG  160 (290)
T ss_pred             HcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEECCCCCEEEeeCCCccccCCCCCCCCC
Confidence            653          3889999999999999999999988   99999999999999999999999999865321       


Q ss_pred             -------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          484 -------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       484 -------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                   ..+.++||||||+++|||++|+.|+.....   .....                 ......  ..++
T Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~---~~~~~-----------------~~~~~~--~~~~  218 (290)
T cd05580         161 TPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNP---IQIYE-----------------KILEGK--VRFP  218 (290)
T ss_pred             CccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH---HHHHH-----------------HHhcCC--ccCC
Confidence                         134579999999999999999999865431   10000                 000111  1122


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRP-----NMAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~~  581 (615)
                      ......+.+++.+||..||.+||     +++|+++.
T Consensus       219 ~~~~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~~~  254 (290)
T cd05580         219 SFFSPDAKDLIRNLLQVDLTKRLGNLKNGVNDIKNH  254 (290)
T ss_pred             ccCCHHHHHHHHHHccCCHHHccCcccCCHHHHHcC
Confidence            23345678999999999999999     66777653

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.96  E-value=2.3e-28  Score=250.18  Aligned_cols=221  Identities=27%  Similarity=0.406  Sum_probs=164.0

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcC-CCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDS-QGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~-~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||+|..  +|+.+|+|+++.         ++.+|++++++++|+|++++++++.+. .+..++|+||+++ +|.+++.
T Consensus        13 ~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~   91 (287)
T cd07840          13 GQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFEYMDH-DLTGLLD   91 (287)
T ss_pred             eEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEeccccc-cHHHHHh
Confidence            58999998  579999999863         367899999999999999999998765 2579999999974 8999887


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------  483 (615)
                      ....         .+++.++..++.|++.||+|||+.+   ++|+||||+||++++++.+||+|||++.....       
T Consensus        92 ~~~~---------~~~~~~~~~i~~~i~~al~~LH~~~---~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~  159 (287)
T cd07840          92 SPEV---------KFTESQIKCYMKQLLEGLQYLHSNG---ILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYT  159 (287)
T ss_pred             ccCC---------CCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCcHHHeEEcCCCCEEEccccceeeccCCCccccc
Confidence            6432         3899999999999999999999998   99999999999999999999999998753311       


Q ss_pred             ------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhh-----
Q 047629          484 ------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNW-----  540 (615)
Q Consensus       484 ------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----  540 (615)
                                        ..+.++||||||+++|||++|+.|+........   ...+........  ......+     
T Consensus       160 ~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~  234 (287)
T cd07840         160 NRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQ---LEKIFELCGSPT--DENWPGVSKLPW  234 (287)
T ss_pred             ccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChHHH---HHHHHHHhCCCc--hhhccccccchh
Confidence                              135689999999999999999999875442111   111111100000  0000000     


Q ss_pred             ---------cCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          541 ---------MDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       541 ---------~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                               ....+...+...+...+.+++..||+.+|.+||++.++++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~  284 (287)
T cd07840         235 FENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQH  284 (287)
T ss_pred             hhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence                     00000011111125568999999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.96  E-value=2.9e-28  Score=246.02  Aligned_cols=205  Identities=23%  Similarity=0.315  Sum_probs=161.5

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||++..  +|+.+|+|.+..          .+.+|++++++++|+||+++++.+.. +...++++||+++|+|.+++.
T Consensus         7 ~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~   85 (265)
T cd05579           7 GRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQG-KKNLYLVMEYLPGGDLASLLE   85 (265)
T ss_pred             eEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheec-CcEEEEEEecCCCCcHHHHHH
Confidence            47999998  489999998752          36679999999999999999998764 447899999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------  483 (615)
                      ...          .+++..+..++.|++.||.|||+.+   ++|+||+|+||++++++.+||+|||++.....       
T Consensus        86 ~~~----------~~~~~~~~~i~~qi~~~L~~lH~~~---i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~  152 (265)
T cd05579          86 NVG----------SLDEDVARIYIAEIVLALEYLHSNG---IIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLN  152 (265)
T ss_pred             HcC----------CCCHHHHHHHHHHHHHHHHHHHHcC---eecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccc
Confidence            643          2899999999999999999999998   99999999999999999999999998753211       


Q ss_pred             ------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhh
Q 047629          484 ------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRN  539 (615)
Q Consensus       484 ------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  539 (615)
                                              ..+.++||||||+++|||++|+.|+......+.      ..           .+  
T Consensus       153 ~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~------~~-----------~~--  213 (265)
T cd05579         153 DDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETPEEI------FQ-----------NI--  213 (265)
T ss_pred             cccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHH------HH-----------HH--
Confidence                                    124579999999999999999999865432110      00           00  


Q ss_pred             hcCCcCCCCCChH--HHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          540 WMDPNLESFYPID--GALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       540 ~~dp~l~~~~~~~--~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                       .....  ..+..  ....+.+++..||+.+|.+||++.++.+.|+
T Consensus       214 -~~~~~--~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~  256 (265)
T cd05579         214 -LNGKI--EWPEDVEVSDEAIDLISKLLVPDPEKRLGAKSIEEIKN  256 (265)
T ss_pred             -hcCCc--CCCccccCCHHHHHHHHHHhcCCHhhcCCCccHHHHhc
Confidence             00000  11111  1456799999999999999999966665554

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.96  E-value=9.1e-28  Score=247.47  Aligned_cols=227  Identities=21%  Similarity=0.331  Sum_probs=161.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCC----cEEEEEeecCCCCHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRI-NHANLVKLMGVSSDSQG----NRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~----~~~lV~E~~~~GsL~  406 (615)
                      |.||+|..  +|+.||+|.++         ..+.+|+.+++++ +|+||+++++++...+.    ..++||||+++ +|.
T Consensus        15 g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~   93 (295)
T cd07837          15 GKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSLYLVFEYLDS-DLK   93 (295)
T ss_pred             eEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceEEEEeeccCc-CHH
Confidence            58999997  68999999875         2467899999999 56999999998765432    27999999985 899


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC-CCcEEEeecCCCCCCC---
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS-RFKAKIANFSLAAPAT---  482 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-~~~~kl~DFGla~~~~---  482 (615)
                      +++.......     ...+++..+..++.||+.||.|||+++   ++||||||+||+++. ++.+||+|||+++...   
T Consensus        94 ~~~~~~~~~~-----~~~~~~~~~~~~~~qi~~~L~~LH~~~---i~H~dl~~~nil~~~~~~~~kl~dfg~~~~~~~~~  165 (295)
T cd07837          94 KFMDSNGRGP-----GRPLPAKTIKSFMYQLLKGVAHCHKHG---VMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPV  165 (295)
T ss_pred             HHHHHhcccC-----CCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCChHHEEEecCCCeEEEeecccceecCCCc
Confidence            9886543210     114899999999999999999999998   999999999999999 8999999999875321   


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH-HHH---HHHH
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE-EKR---EERL  537 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~-~~~---~~~~  537 (615)
                                           ...+.++||||||+++|||++|+.|+.......  .+.+.+ ..+... ...   ....
T Consensus       166 ~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~  242 (295)
T cd07837         166 KSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQ--QLLHIF-KLLGTPTEQVWPGVSKL  242 (295)
T ss_pred             cccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHH--HHHHHH-HHhCCCChhhCcchhhc
Confidence                                 123568999999999999999999987543211  111111 100000 000   0000


Q ss_pred             hhhcC-CcCC----CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          538 RNWMD-PNLE----SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       538 ~~~~d-p~l~----~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..... +...    ..........+.+++.+|++.||.+||++.|++.+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~~  291 (295)
T cd07837         243 RDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALTH  291 (295)
T ss_pred             cchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence            00000 0000    00011234567899999999999999999998863

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.96  E-value=5.1e-28  Score=254.41  Aligned_cols=209  Identities=17%  Similarity=0.199  Sum_probs=156.9

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +++.||+|.+++          .+.+|+.++..++|+||+++.+++.+. +..++||||+++|+|.+++.
T Consensus        15 g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~-~~~~lv~Ey~~gg~L~~~l~   93 (331)
T cd05624          15 GEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDE-NYLYLVMDYYVGGDLLTLLS   93 (331)
T ss_pred             eEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcC-CEEEEEEeCCCCCcHHHHHH
Confidence            48999987  678999998853          256789999999999999999988754 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ....         .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...        
T Consensus        94 ~~~~---------~l~~~~~~~~~~qi~~~L~~lH~~~---iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~  161 (331)
T cd05624          94 KFED---------RLPEDMARFYIAEMVLAIHSIHQLH---YVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQSS  161 (331)
T ss_pred             HhcC---------CCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCchHHEEEcCCCCEEEEeccceeeccCCCceeec
Confidence            6432         3889999999999999999999998   9999999999999999999999999874321        


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                           ..++.++|||||||++|||++|+.||......+   .   .....          ....
T Consensus       162 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~---~---~~~i~----------~~~~  225 (331)
T cd05624         162 VAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVE---T---YGKIM----------NHEE  225 (331)
T ss_pred             cccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCCHHH---H---HHHHH----------cCCC
Confidence                                 123457899999999999999999997543110   0   00000          0000


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCC--CCCHHHHHHH
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLS--RPNMAEVVFN  581 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~--RPsm~ev~~~  581 (615)
                      ...+... ..+....+.+++.+|+..++.+  |+++++++.+
T Consensus       226 ~~~~p~~-~~~~~~~~~~li~~ll~~~~~~~~~~~~~~~~~h  266 (331)
T cd05624         226 RFQFPSH-ITDVSEEAKDLIQRLICSRERRLGQNGIEDFKKH  266 (331)
T ss_pred             cccCCCc-cccCCHHHHHHHHHHccCchhhcCCCCHHHHhcC
Confidence            0001110 1123345778888888765544  5688888764

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.96  E-value=4.6e-28  Score=254.27  Aligned_cols=226  Identities=15%  Similarity=0.253  Sum_probs=165.3

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||++..  +|+.||+|.++         +.+.+|+.+++.++|+||+++++++... +..++|+||+++|+|.+++..
T Consensus        14 ~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~~~v~e~~~~~~l~~~l~~   92 (328)
T cd08226          14 TSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTG-SWLWVISPFMAYGSANSLLKT   92 (328)
T ss_pred             eeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecC-CceEEEEecccCCCHHHHHHh
Confidence            37999987  78999999875         2367899999999999999999998764 478999999999999999976


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC----------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA----------  481 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~----------  481 (615)
                      ....        .+++..+..++.|++.||+|||+.+   ++||||||+|||++.++.+|++|||.+...          
T Consensus        93 ~~~~--------~~~~~~~~~~~~qi~~aL~~lH~~~---ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (328)
T cd08226          93 YFPE--------GMSEALIGNILFGALRGLNYLHQNG---YIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKVV  161 (328)
T ss_pred             hccc--------CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEeCCCcEEEechHHHhhhhccCcccccc
Confidence            4321        3889999999999999999999987   999999999999999999999999642100          


Q ss_pred             --------------------C--CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHH---------HHhH-
Q 047629          482 --------------------T--NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIRE---------VLKV-  529 (615)
Q Consensus       482 --------------------~--~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~---------~~~~-  529 (615)
                                          .  ..++.++|||||||++|||++|+.|+.........  ......         .... 
T Consensus       162 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  239 (328)
T cd08226         162 YDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQML--LQKLKGPPYSPLDITTFPCE  239 (328)
T ss_pred             ccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHH--HHHhcCCCCCCccccccchh
Confidence                                0  11356889999999999999999998754322111  100000         0000 


Q ss_pred             HHHH---HHHH--------------hhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          530 EEKR---EERL--------------RNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       530 ~~~~---~~~~--------------~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      ....   ....              ....+..+....+......+.+|+++||+.||++|||+.|+++.-
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~~  309 (328)
T cd08226         240 ESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSHA  309 (328)
T ss_pred             hhhhccchhhhhcccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhCH
Confidence            0000   0000              011111122222334556789999999999999999999998753

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.96  E-value=3.8e-28  Score=278.29  Aligned_cols=211  Identities=21%  Similarity=0.319  Sum_probs=160.5

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCC-CcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQ-GNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~-~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||++..  .++.+|+|.+.         ..+..|+.+|.+++|||||++++++.+.. ..+||||||+++|+|.++|.
T Consensus        27 GtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~lyIVMEY~~gGSL~~lL~  106 (1021)
T PTZ00266         27 GEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKLYILMEFCDAGDLSRNIQ  106 (1021)
T ss_pred             eEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEEEEEEeCCCCCcHHHHHH
Confidence            48999987  67889999875         24778999999999999999999876433 35899999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCC----CCeEecCCCCCceeeCC-----------------CCc
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQ----PSIVHRDIRTNNIQLDS-----------------RFK  469 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~----~~ivHrDlk~~NILld~-----------------~~~  469 (615)
                      ......      ..+++..++.|+.||+.||.|||+.+.    .+|+||||||+||||+.                 ...
T Consensus       107 k~~~~~------g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~i  180 (1021)
T PTZ00266        107 KCYKMF------GKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPI  180 (1021)
T ss_pred             HHhhcc------CCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccccccccCCCCc
Confidence            532110      138999999999999999999998542    34999999999999964                 245


Q ss_pred             EEEeecCCCCCCC------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHH
Q 047629          470 AKIANFSLAAPAT------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIRE  525 (615)
Q Consensus       470 ~kl~DFGla~~~~------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~  525 (615)
                      +||+|||+++...                        ..++.++|||||||+||||++|+.||.......  .+.    .
T Consensus       181 VKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~~~--qli----~  254 (1021)
T PTZ00266        181 AKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANNFS--QLI----S  254 (1021)
T ss_pred             eEEccCCccccccccccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCCcHH--HHH----H
Confidence            8999999986431                        114568999999999999999999997543211  000    0


Q ss_pred             HHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          526 VLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       526 ~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                      .          +..  .|.+.   .......+.+|+..||+.+|.+||++.|++.
T Consensus       255 ~----------lk~--~p~lp---i~~~S~eL~dLI~~~L~~dPeeRPSa~QlL~  294 (1021)
T PTZ00266        255 E----------LKR--GPDLP---IKGKSKELNILIKNLLNLSAKERPSALQCLG  294 (1021)
T ss_pred             H----------Hhc--CCCCC---cCCCCHHHHHHHHHHhcCChhHCcCHHHHhc
Confidence            0          111  01111   0112345889999999999999999999985

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.96  E-value=1.2e-27  Score=240.16  Aligned_cols=207  Identities=27%  Similarity=0.388  Sum_probs=166.1

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCC-CcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQ-GNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~-~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||+|..  +|+.+++|.++.         .+.+|++++++++|+||+++++.+.+.. ...++++||+++++|.+++.
T Consensus        14 ~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~   93 (260)
T cd06606          14 GSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLK   93 (260)
T ss_pred             eEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEEEecCCCcHHHHHH
Confidence            58999998  489999998752         3678999999999999999999987541 46899999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------  483 (615)
                      ...          .++|.++..++.|++.||+|||+.+   ++|+||+|+||+++.++.+||+|||.+.....       
T Consensus        94 ~~~----------~~~~~~~~~~~~~l~~~l~~lh~~~---~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~  160 (260)
T cd06606          94 KFG----------KLPEPVIRKYTRQILEGLAYLHSNG---IVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGT  160 (260)
T ss_pred             HcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEcCCCCEEEcccccEEecccccccccc
Confidence            654          2899999999999999999999987   99999999999999999999999998754321       


Q ss_pred             ------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          484 ------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       484 ------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                        ..+.++||||||++++||++|+.|+....+.. ..                  +........
T Consensus       161 ~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~-~~------------------~~~~~~~~~  221 (260)
T cd06606         161 GSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGNPM-AA------------------LYKIGSSGE  221 (260)
T ss_pred             cCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchH-HH------------------HHhccccCC
Confidence                              13568999999999999999999987654111 00                  001111111


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ....+......+.+++.+|++.||.+||++.|++..
T Consensus       222 ~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~~  257 (260)
T cd06606         222 PPEIPEHLSEEAKDFLRKCLRRDPKKRPTADELLQH  257 (260)
T ss_pred             CcCCCcccCHHHHHHHHHhCcCChhhCCCHHHHhhC
Confidence            122333445678999999999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.96  E-value=1.4e-27  Score=238.72  Aligned_cols=207  Identities=29%  Similarity=0.469  Sum_probs=164.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      +.||++..  +|+.+++|++.       ..+.+|++.+++++|+|++++++++... ...++++||+++++|.+++....
T Consensus        14 ~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-~~~~l~~e~~~~~~L~~~~~~~~   92 (253)
T cd05122          14 GEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKK-DELWIVMEFCSGGSLKDLLKSTN   92 (253)
T ss_pred             eEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecC-CeEEEEEecCCCCcHHHHHhhcC
Confidence            58999998  58999999875       2477899999999999999999988754 47899999999999999997653


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC---------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND---------  484 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~---------  484 (615)
                      .         .+++..+..++.+++.||.|||+.+   ++|+||+|+||++++++.+||+|||.+......         
T Consensus        93 ~---------~~~~~~~~~i~~~i~~~l~~lh~~~---i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~  160 (253)
T cd05122          93 Q---------TLTESQIAYVCKELLKGLEYLHSNG---IIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGT  160 (253)
T ss_pred             C---------CCCHHHHHHHHHHHHHHHHHhhcCC---EecCCCCHHHEEEccCCeEEEeeccccccccccccccceecC
Confidence            2         3899999999999999999999987   999999999999999999999999988554221         


Q ss_pred             -------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCCh
Q 047629          485 -------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPI  551 (615)
Q Consensus       485 -------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~  551 (615)
                                   .+.++||||||++++||++|+.|+..........                 ......-+.+..  +.
T Consensus       161 ~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~-----------------~~~~~~~~~~~~--~~  221 (253)
T cd05122         161 PYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMKALF-----------------KIATNGPPGLRN--PE  221 (253)
T ss_pred             CcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchHHHHH-----------------HHHhcCCCCcCc--cc
Confidence                         3568999999999999999999987543211100                 000000011111  11


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          552 DGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       552 ~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .....+.+++.+||+.||++|||+.|+++.
T Consensus       222 ~~~~~~~~~i~~~l~~~p~~R~t~~~~l~~  251 (253)
T cd05122         222 KWSDEFKDFLKKCLQKNPEKRPTAEQLLKH  251 (253)
T ss_pred             ccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            113568999999999999999999999863

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.96  E-value=6.1e-28  Score=249.26  Aligned_cols=205  Identities=21%  Similarity=0.348  Sum_probs=162.7

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      +.||++..  +++.+|+|.+.       +.+.+|+.++++++|+|++++++++... ...++|+||+++|+|.+++... 
T Consensus        33 g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~~-  110 (293)
T cd06647          33 GTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVG-DELWVVMEYLAGGSLTDVVTET-  110 (293)
T ss_pred             eEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeC-CcEEEEEecCCCCcHHHHHhhc-
Confidence            58999986  68899999875       2467899999999999999999998754 4789999999999999999653 


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                                .+++.++..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||++....           
T Consensus       111 ----------~l~~~~~~~i~~~l~~al~~LH~~g---i~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~~  177 (293)
T cd06647         111 ----------CMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVG  177 (293)
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHhCC---EeeccCCHHHEEEcCCCCEEEccCcceecccccccccccccC
Confidence                      2789999999999999999999998   9999999999999999999999999864221           


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  ...+.++||||||+++||+++|+.||..........      ..             ...+......+
T Consensus       178 ~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~~~------~~-------------~~~~~~~~~~~  238 (293)
T cd06647         178 TPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALY------LI-------------ATNGTPELQNP  238 (293)
T ss_pred             ChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhhhee------eh-------------hcCCCCCCCCc
Confidence                        124568999999999999999999997543211100      00             00111101112


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ......+.+++..||+.+|++||++.|++.+
T Consensus       239 ~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h  269 (293)
T cd06647         239 EKLSAIFRDFLNRCLEMDVEKRGSAKELLQH  269 (293)
T ss_pred             cccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            2234467899999999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.96  E-value=1e-27  Score=247.97  Aligned_cols=220  Identities=25%  Similarity=0.353  Sum_probs=161.5

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCC---------CcEEEEEeecCC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQ---------GNRFLVYEYAEN  402 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~---------~~~~lV~E~~~~  402 (615)
                      +.||+|..  +|+.||+|+++.         .+.+|++++++++|+|++++++++.+.+         +..++|+||+++
T Consensus        21 g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~  100 (302)
T cd07864          21 GQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDH  100 (302)
T ss_pred             EEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhccccCCcEEEEEcccCc
Confidence            58999998  689999999852         3567999999999999999999876432         258999999986


Q ss_pred             CCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC
Q 047629          403 GSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT  482 (615)
Q Consensus       403 GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~  482 (615)
                       +|.+++.....         .+++.++..++.|++.||.|||+.+   |+||||||+||++++++.+||+|||++....
T Consensus       101 -~l~~~l~~~~~---------~~~~~~~~~i~~qi~~aL~~LH~~~---i~H~dl~p~nili~~~~~~kl~dfg~~~~~~  167 (302)
T cd07864         101 -DLMGLLESGLV---------HFSEDHIKSFMKQLLEGLNYCHKKN---FLHRDIKCSNILLNNKGQIKLADFGLARLYN  167 (302)
T ss_pred             -cHHHHHhcCCC---------CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCcEEeCccccccccc
Confidence             77777765422         3899999999999999999999998   9999999999999999999999999876421


Q ss_pred             -------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHH
Q 047629          483 -------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERL  537 (615)
Q Consensus       483 -------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  537 (615)
                                               ...+.++|||||||++|||++|+.|+......+...   .+........  ....
T Consensus       168 ~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~  242 (302)
T cd07864         168 SEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQLE---LISRLCGSPC--PAVW  242 (302)
T ss_pred             CCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCChHHHHH---HHHHHhCCCC--hhhc
Confidence                                     113567999999999999999999987543211111   1111100000  0000


Q ss_pred             hhh--------cCC------cCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          538 RNW--------MDP------NLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       538 ~~~--------~dp------~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..+        .++      .+...+ ...+..+.+++..||+.||.+||++.|++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  299 (302)
T cd07864         243 PDVIKLPYFNTMKPKKQYRRRLREEF-SFIPTPALDLLDHMLTLDPSKRCTAEEALNS  299 (302)
T ss_pred             ccccccccccccccccccccchhhhc-CCCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            000        000      000001 1124568999999999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.96  E-value=8.4e-28  Score=246.46  Aligned_cols=206  Identities=20%  Similarity=0.250  Sum_probs=157.8

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHh---cCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRILQR---INHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~---l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||++..  +|+.+|+|.+...          +.+|..++..   .+|+|++.+.+++... +..++||||+++|+|.+
T Consensus         8 g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~   86 (279)
T cd05633           8 GEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTP-DKLCFILDLMNGGDLHY   86 (279)
T ss_pred             eEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecC-CeEEEEEecCCCCCHHH
Confidence            48999887  6899999987421          2344443333   4799999999988754 47899999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++....          .++|.++..++.|++.||+|||+++   ++||||||+|||+++++.+|++|||++....     
T Consensus        87 ~i~~~~----------~l~~~~~~~i~~qi~~al~~lH~~~---ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~~  153 (279)
T cd05633          87 HLSQHG----------VFSEKEMRFYATEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPH  153 (279)
T ss_pred             HHHhcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---cCCCCCCHHHEEECCCCCEEEccCCcceeccccCcc
Confidence            987543          3899999999999999999999998   9999999999999999999999999875321     


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                       ...+.++|||||||++|||++|+.||..........    +..           .....++. 
T Consensus       154 ~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~----~~~-----------~~~~~~~~-  217 (279)
T cd05633         154 ASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHE----IDR-----------MTLTVNVE-  217 (279)
T ss_pred             CcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHHH----HHH-----------HhhcCCcC-
Confidence                             124568999999999999999999997543222111    000           00011222 


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRP-----NMAEVVFN  581 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~~  581 (615)
                         .+......+.+++..|++.||.+||     +++|++++
T Consensus       218 ---~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h  255 (279)
T cd05633         218 ---LPDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEH  255 (279)
T ss_pred             ---CccccCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhC
Confidence               2333445678999999999999999     59988876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.96  E-value=1.3e-27  Score=248.53  Aligned_cols=212  Identities=25%  Similarity=0.368  Sum_probs=164.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||+|..  +++.+|+|.+.          .++.+|++++++++|+|++++.+++... ...++|+||+. |+|.+++.
T Consensus        29 g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~-~~l~~~~~  106 (308)
T cd06634          29 GAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLRE-HTAWLVMEYCL-GSASDLLE  106 (308)
T ss_pred             EEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcC-CeeEEEEEccC-CCHHHHHH
Confidence            58999987  67899999874          2356899999999999999999998764 47899999996 68888875


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ....         .+++.++..++.|++.||.|||+.+   ++||||||+||+++.++.+||+|||++....        
T Consensus       107 ~~~~---------~l~~~~~~~~~~~l~~~l~~LH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~  174 (308)
T cd06634         107 VHKK---------PLQEVEIAAVTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANXFVGT  174 (308)
T ss_pred             HcCC---------CCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHhEEECCCCcEEECCcccceeecCcccccCC
Confidence            4332         3889999999999999999999987   9999999999999999999999999875321        


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                    ...+.++|||||||++|||++|+.|+......+..      .           .+.....+...  
T Consensus       175 ~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~------~-----------~~~~~~~~~~~--  235 (308)
T cd06634         175 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSAL------Y-----------HIAQNESPALQ--  235 (308)
T ss_pred             ccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccccHHHHH------H-----------HHhhcCCCCcC--
Confidence                          12456899999999999999999998643211100      0           00000111111  


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                       .......+.+++.+||+.+|++||++.++++........
T Consensus       236 -~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~~~~~~~  274 (308)
T cd06634         236 -SGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRER  274 (308)
T ss_pred             -cccccHHHHHHHHHHhhCCcccCCCHHHHhhCccccccC
Confidence             123345578999999999999999999999876544443

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.96  E-value=5.8e-28  Score=248.21  Aligned_cols=210  Identities=22%  Similarity=0.372  Sum_probs=159.0

Q ss_pred             ceEEEEEE--CCeEEEEEEccH--------HHHHHHHHHHhcC-CCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh--
Q 047629          343 KSVYRATI--DGKVLAVKKIKE--------DVTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL--  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~--------~~~~Ei~~l~~l~-H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L--  409 (615)
                      |.||++..  +|+.+|+|.+..        .+.+|+.++.++. |+||+++++++.. ++..+++|||++. +|.++.  
T Consensus        18 g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~-~~~~~~~~e~~~~-~l~~l~~~   95 (288)
T cd06616          18 GTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFR-EGDCWICMELMDI-SLDKFYKY   95 (288)
T ss_pred             eEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEec-CCcEEEEEecccC-CHHHHHHH
Confidence            58999987  689999998852        4678999999996 9999999998875 4478999999864 554433  


Q ss_pred             -ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhC-CCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          410 -HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH-AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       410 -~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                       .....        ..+++..+..++.+++.||+|||+. +   ++||||||+||+++.++.+||+|||+++...     
T Consensus        96 ~~~~~~--------~~l~~~~~~~i~~~i~~~l~~lh~~~~---i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~  164 (288)
T cd06616          96 VYEVLK--------SVIPEEILGKIAVATVKALNYLKEELK---IIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIAK  164 (288)
T ss_pred             HHHhhc--------CCCCHHHHHHHHHHHHHHHHHHhhcCC---eeccCCCHHHEEEccCCcEEEeecchhHHhccCCcc
Confidence             22111        1389999999999999999999975 5   9999999999999999999999999874321     


Q ss_pred             --------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          483 --------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       483 --------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                          ..++.++|||||||++|||++|+.||.....     ....+.           .......
T Consensus       165 ~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~-----~~~~~~-----------~~~~~~~  228 (288)
T cd06616         165 TRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWNS-----VFDQLT-----------QVVKGDP  228 (288)
T ss_pred             ccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcch-----HHHHHh-----------hhcCCCC
Confidence                                1246689999999999999999999864321     011000           0111112


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      |.+....+......+.+|+.+||+.||++||++.||+..
T Consensus       229 ~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~~  267 (288)
T cd06616         229 PILSNSEEREFSPSFVNFINLCLIKDESKRPKYKELLEH  267 (288)
T ss_pred             CcCCCcCCCccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            233322223345578999999999999999999999886

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=3.2e-28  Score=260.57  Aligned_cols=206  Identities=24%  Similarity=0.362  Sum_probs=166.8

Q ss_pred             cccccccccc----ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEE
Q 047629          333 MNLSEHYSIG----KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRI-NHANLVKLMGVSSDSQGNRFL  395 (615)
Q Consensus       333 ~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~l  395 (615)
                      .+|.-...+|    |.|+.+.+  +++.+|||.++++          ...|..|+... +||.|+.|+..+.. +.++|+
T Consensus       368 ~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT-~~~l~f  446 (694)
T KOG0694|consen  368 DDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQT-KEHLFF  446 (694)
T ss_pred             cceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeeccccccc-CCeEEE
Confidence            4455555555    58999988  6789999999853          45688888777 59999999987764 458999


Q ss_pred             EEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeec
Q 047629          396 VYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF  475 (615)
Q Consensus       396 V~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  475 (615)
                      ||||+.+|++..+.+..           .++.....-++..|+.||.|||+++   ||+||||.+|||||.+|.+||+||
T Consensus       447 vmey~~Ggdm~~~~~~~-----------~F~e~rarfyaAev~l~L~fLH~~~---IIYRDlKLdNiLLD~eGh~kiADF  512 (694)
T KOG0694|consen  447 VMEYVAGGDLMHHIHTD-----------VFSEPRARFYAAEVVLGLQFLHENG---IIYRDLKLDNLLLDTEGHVKIADF  512 (694)
T ss_pred             EEEecCCCcEEEEEecc-----------cccHHHHHHHHHHHHHHHHHHHhcC---ceeeecchhheEEcccCcEEeccc
Confidence            99999999976666543           2899999999999999999999998   999999999999999999999999


Q ss_pred             CCCCCCC-----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHH
Q 047629          476 SLAAPAT-----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEK  532 (615)
Q Consensus       476 Gla~~~~-----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~  532 (615)
                      ||++...                       ..|+..+|.|||||+||||+.|..||...++.+.   .+           
T Consensus       513 GlcKe~m~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee~---Fd-----------  578 (694)
T KOG0694|consen  513 GLCKEGMGQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEEV---FD-----------  578 (694)
T ss_pred             ccccccCCCCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHHHH---HH-----------
Confidence            9997542                       2367789999999999999999999986553221   11           


Q ss_pred             HHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCH
Q 047629          533 REERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNM  575 (615)
Q Consensus       533 ~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm  575 (615)
                            .++.-  .-.||.-...+.+.++++.+..+|++|--+
T Consensus       579 ------sI~~d--~~~yP~~ls~ea~~il~~ll~k~p~kRLG~  613 (694)
T KOG0694|consen  579 ------SIVND--EVRYPRFLSKEAIAIMRRLLRKNPEKRLGS  613 (694)
T ss_pred             ------HHhcC--CCCCCCcccHHHHHHHHHHhccCcccccCC
Confidence                  11110  124777777888999999999999999987

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.96  E-value=5.8e-28  Score=251.30  Aligned_cols=230  Identities=24%  Similarity=0.329  Sum_probs=162.4

Q ss_pred             ceEEEEEE----CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCC-CcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI----DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQ-GNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~----~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~-~~~~lV~E~~~~GsL~~  407 (615)
                      +.||+|..    +|+.||+|.+..          .+.+|+.++.+++||||+++++++.+.+ ...++||||+++ +|.+
T Consensus        14 g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~   92 (316)
T cd07842          14 GRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYLLFDYAEH-DLWQ   92 (316)
T ss_pred             EEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEEEEeCCCc-CHHH
Confidence            58999997    478999998864          4578999999999999999999987652 368999999975 7777


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC----CCcEEEeecCCCCCCC-
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS----RFKAKIANFSLAAPAT-  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~----~~~~kl~DFGla~~~~-  482 (615)
                      ++........     ..+++..+..++.|++.||+|||+.+   ++||||||+||+++.    ++.+||+|||+++... 
T Consensus        93 ~~~~~~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~~~---i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~  164 (316)
T cd07842          93 IIKFHRQAKR-----VSIPPSMVKSLLWQILNGVHYLHSNW---VLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNA  164 (316)
T ss_pred             HHHhhccCCC-----cCcCHHHHHHHHHHHHHHHHHHHhCC---EeeCCCCHHHEEEcCCCCccceEEECCCccccccCC
Confidence            7654322110     14889999999999999999999998   999999999999999    8999999999876431 


Q ss_pred             --------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChh------HHHHHHHHHHHhHH
Q 047629          483 --------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKT------AVLWKEIREVLKVE  530 (615)
Q Consensus       483 --------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~------~~l~~~~~~~~~~~  530 (615)
                                                ...+.++||||||++++||++|+.|+........      ......+...+...
T Consensus       165 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  244 (316)
T cd07842         165 PLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTP  244 (316)
T ss_pred             CcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHHHhCCC
Confidence                                      1134579999999999999999999875443220      00001111111000


Q ss_pred             HH-HH---HHH---hhhcCCcCCCCCC---------h--HHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          531 EK-RE---ERL---RNWMDPNLESFYP---------I--DGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       531 ~~-~~---~~~---~~~~dp~l~~~~~---------~--~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .. ..   ..+   ....+......++         .  .....+.+++.+|++.||++|||+.|++++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~~  313 (316)
T cd07842         245 TEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALEH  313 (316)
T ss_pred             chhHHHHHhhcccchhhhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            00 00   000   0000000001111         0  233468899999999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=7.2e-29  Score=259.26  Aligned_cols=206  Identities=25%  Similarity=0.391  Sum_probs=167.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||.+..  +.+.||||+|.          .++..|+..|.+++|||+|.+.|++.. +...|||||||- ||-.+.|.
T Consensus        40 GAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLr-e~TaWLVMEYCl-GSAsDlle  117 (948)
T KOG0577|consen   40 GAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLR-EHTAWLVMEYCL-GSASDLLE  117 (948)
T ss_pred             ceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeec-cchHHHHHHHHh-ccHHHHHH
Confidence            57888876  77999999995          468899999999999999999999885 447899999995 68888887


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC---------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA---------  481 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~---------  481 (615)
                      -..+         +|....+..|+.+.+.||+|||+++   .||||||+.||||.+.+.+||+|||.|...         
T Consensus       118 VhkK---------plqEvEIAAi~~gaL~gLaYLHS~~---~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PAnsFvGT  185 (948)
T KOG0577|consen  118 VHKK---------PLQEVEIAAITHGALQGLAYLHSHN---RIHRDIKAGNILLSEPGLVKLADFGSASIMAPANSFVGT  185 (948)
T ss_pred             HHhc---------cchHHHHHHHHHHHHHHHHHHHHhh---HHhhhccccceEecCCCeeeeccccchhhcCchhcccCC
Confidence            6654         4899999999999999999999998   999999999999999999999999988543         


Q ss_pred             -------------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          482 -------------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       482 -------------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                   .+.++-|+||||+|+++.||..+|+|.....-         +...+.        +..--.|.|.  
T Consensus       186 PywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNA---------MSALYH--------IAQNesPtLq--  246 (948)
T KOG0577|consen  186 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA---------MSALYH--------IAQNESPTLQ--  246 (948)
T ss_pred             ccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchH---------HHHHHH--------HHhcCCCCCC--
Confidence                         23367799999999999999999999865431         111111        1111234443  


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                       ..+-...+..++..|++.-|.+|||..+++..-
T Consensus       247 -s~eWS~~F~~Fvd~CLqKipqeRptse~ll~H~  279 (948)
T KOG0577|consen  247 -SNEWSDYFRNFVDSCLQKIPQERPTSEELLKHR  279 (948)
T ss_pred             -CchhHHHHHHHHHHHHhhCcccCCcHHHHhhcc
Confidence             235556789999999999999999999888753

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2.9e-28  Score=254.15  Aligned_cols=204  Identities=23%  Similarity=0.383  Sum_probs=167.1

Q ss_pred             eEEEEEE-CCeEEEEEEcc---------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          344 SVYRATI-DGKVLAVKKIK---------EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       344 ~Vy~~~~-~g~~vAvK~~~---------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      .||++.. +.+.+|+|++.         ..+.+|++.|.++ .|.+||+|++|-. .++.+|+||||=+ -+|.++|...
T Consensus       376 kV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv-~d~~lYmvmE~Gd-~DL~kiL~k~  453 (677)
T KOG0596|consen  376 KVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEV-TDGYLYMVMECGD-IDLNKILKKK  453 (677)
T ss_pred             eeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeec-cCceEEEEeeccc-ccHHHHHHhc
Confidence            7999988 66888998875         2478999999999 5999999999965 4678999999874 4999999876


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC--------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND--------  484 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~--------  484 (615)
                      ...        ...| .+..+..|++.++.++|.++   |||.||||.|+|+-. |.+||.|||+|.....+        
T Consensus       454 ~~~--------~~~~-~lk~ywkqML~aV~~IH~~g---IVHSDLKPANFLlVk-G~LKLIDFGIA~aI~~DTTsI~kds  520 (677)
T KOG0596|consen  454 KSI--------DPDW-FLKFYWKQMLLAVKTIHQHG---IVHSDLKPANFLLVK-GRLKLIDFGIANAIQPDTTSIVKDS  520 (677)
T ss_pred             cCC--------CchH-HHHHHHHHHHHHHHHHHHhc---eeecCCCcccEEEEe-eeEEeeeechhcccCccccceeecc
Confidence            542        2446 77889999999999999998   999999999999854 68999999999654211        


Q ss_pred             ----------------------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHH
Q 047629          485 ----------------------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREER  536 (615)
Q Consensus       485 ----------------------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  536 (615)
                                                  +++++||||+||+||+|+.|+.||....+                   .-.+
T Consensus       521 QvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n-------------------~~aK  581 (677)
T KOG0596|consen  521 QVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIIN-------------------QIAK  581 (677)
T ss_pred             ccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHH-------------------HHHH
Confidence                                        34689999999999999999999864221                   1246


Q ss_pred             HhhhcCCcCCCCCChH-HHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          537 LRNWMDPNLESFYPID-GALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       537 ~~~~~dp~l~~~~~~~-~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +..++||...-+||.- ...++.++++.|+.+||++||+..|+++.
T Consensus       582 l~aI~~P~~~Iefp~~~~~~~li~~mK~CL~rdPkkR~si~eLLqh  627 (677)
T KOG0596|consen  582 LHAITDPNHEIEFPDIPENDELIDVMKCCLARDPKKRWSIPELLQH  627 (677)
T ss_pred             HHhhcCCCccccccCCCCchHHHHHHHHHHhcCcccCCCcHHHhcC
Confidence            7788999876666652 23348999999999999999999999985

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.96  E-value=6.7e-28  Score=243.54  Aligned_cols=204  Identities=26%  Similarity=0.332  Sum_probs=162.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||++..  +|+.+|+|.+..          .+.+|++++++++||||+++++++.+. ...++|+||+++++|.+++.
T Consensus        14 ~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~   92 (258)
T cd05578          14 GKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDE-ENMYLVVDLLLGGDLRYHLS   92 (258)
T ss_pred             ceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCC-CeEEEEEeCCCCCCHHHHHH
Confidence            48999987  489999998852          467899999999999999999987654 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------  483 (615)
                      ...          .+++.++..++.|++.||.|||+++   ++|+||||+||++++++.++|+|||++.....       
T Consensus        93 ~~~----------~l~~~~~~~~~~~i~~~l~~lh~~~---i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~  159 (258)
T cd05578          93 QKV----------KFSEEQVKFWICEIVLALEYLHSKG---IIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTST  159 (258)
T ss_pred             hcC----------CcCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeEEcCCCCEEEeecccccccCCCcccccc
Confidence            652          3889999999999999999999998   99999999999999999999999998754311       


Q ss_pred             ---------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          484 ---------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       484 ---------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                     ..+.++||||||+++|||++|+.|+.........    ++...          ... .    ...
T Consensus       160 ~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~----~~~~~----------~~~-~----~~~  220 (258)
T cd05578         160 SGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRD----QIRAK----------QET-A----DVL  220 (258)
T ss_pred             CCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCccHHH----HHHHH----------hcc-c----ccc
Confidence                           1356899999999999999999998765432111    11100          000 1    112


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCH--HHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPNM--AEVV  579 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPsm--~ev~  579 (615)
                      .+......+.+++.+||+.||.+||++  +|++
T Consensus       221 ~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~l~  253 (258)
T cd05578         221 YPATWSTEAIDAINKLLERDPQKRLGDNLKDLK  253 (258)
T ss_pred             CcccCcHHHHHHHHHHccCChhHcCCccHHHHh
Confidence            233344678899999999999999999  6654

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.96  E-value=4.5e-28  Score=255.40  Aligned_cols=228  Identities=21%  Similarity=0.366  Sum_probs=166.3

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCC----CcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQ----GNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~----~~~~lV~E~~~~GsL~~  407 (615)
                      +.||++..  +|+.||||.++.         .+.+|+.++++++|+||+++++++....    ...++|+||+. ++|.+
T Consensus        19 ~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~   97 (337)
T cd07858          19 GIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDVYIVYELMD-TDLHQ   97 (337)
T ss_pred             eEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcEEEEEeCCC-CCHHH
Confidence            48999986  689999998752         3567999999999999999999875432    24799999996 68999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++....          .+++..+..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++...     
T Consensus        98 ~~~~~~----------~l~~~~~~~i~~qi~~aL~~LH~~~---i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~  164 (337)
T cd07858          98 IIRSSQ----------TLSDDHCQYFLYQLLRGLKYIHSAN---VLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGDF  164 (337)
T ss_pred             HHhcCC----------CCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCCCEEECcCccccccCCCccc
Confidence            987543          3899999999999999999999998   9999999999999999999999999986431     


Q ss_pred             -------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhH---HHH---HHHHH
Q 047629          483 -------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV---EEK---REERL  537 (615)
Q Consensus       483 -------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~---~~~---~~~~~  537 (615)
                                         ...+.++|||||||++|||++|+.||...+..+....   +......   ...   .....
T Consensus       165 ~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  241 (337)
T cd07858         165 MTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKL---ITELLGSPSEEDLGFIRNEKA  241 (337)
T ss_pred             ccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHH---HHHHhCCCChHHhhhcCchhh
Confidence                               1245689999999999999999999865432111111   1111100   000   00001


Q ss_pred             hhh-------cCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH--HHhcccc
Q 047629          538 RNW-------MDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN--LSVLTQS  588 (615)
Q Consensus       538 ~~~-------~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~--L~~l~~~  588 (615)
                      .+.       .++..... ..+....+.+++++|++.+|++|||++|+++.  +..+...
T Consensus       242 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~~~~  300 (337)
T cd07858         242 RRYIRSLPYTPRQSFARL-FPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLHDP  300 (337)
T ss_pred             hHHHHhcCcccccCHHHH-cccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhhcCc
Confidence            111       11111111 11334567899999999999999999999987  5554433

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.95  E-value=8.8e-28  Score=241.67  Aligned_cols=208  Identities=25%  Similarity=0.364  Sum_probs=164.2

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||++..  +|+.+|+|.+..         .+.+|++++++++|+||+++.+++.+. ...++|+||+++++|.+++..
T Consensus        14 ~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-~~~~~v~e~~~~~~L~~~~~~   92 (256)
T cd08530          14 GSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDG-NKLCIVMEYAPFGDLSKAISK   92 (256)
T ss_pred             eeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccC-CEEEEEehhcCCCCHHHHHHH
Confidence            47999876  688999998752         356799999999999999999988754 479999999999999999876


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--------  483 (615)
                      .....      ..+++..+..++.|++.||+|||+.+   ++|+||+|+||++++++.+|++|||++.....        
T Consensus        93 ~~~~~------~~~~~~~~~~~~~~l~~al~~lh~~~---i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~  163 (256)
T cd08530          93 RKKKR------KLIPEQEIWRIFIQLLRGLQALHEQK---ILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAKTQIG  163 (256)
T ss_pred             HHhhc------CCCCHHHHHHHHHHHHHHHHHHhhCC---cccCCCCcceEEEecCCcEEEeeccchhhhccCCcccccC
Confidence            32211      13899999999999999999999998   99999999999999999999999998864321        


Q ss_pred             -------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          484 -------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       484 -------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                   ..+.++|+||||+++|||++|+.|+...+..+   +    ..          ....    ......+
T Consensus       164 ~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~---~----~~----------~~~~----~~~~~~~  222 (256)
T cd08530         164 TPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQD---L----RY----------KVQR----GKYPPIP  222 (256)
T ss_pred             CccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---H----HH----------HHhc----CCCCCCc
Confidence                         13458999999999999999999986543211   0    00          0000    0111122


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ......+.+++.+|++.+|++||++.|+++.
T Consensus       223 ~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  253 (256)
T cd08530         223 PIYSQDLQNFIRSMLQVKPKLRPNCDKILAS  253 (256)
T ss_pred             hhhCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence            3444568999999999999999999999864

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.95  E-value=1.1e-27  Score=247.04  Aligned_cols=222  Identities=21%  Similarity=0.322  Sum_probs=159.5

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||+|..  +|+.||+|.++         ..+.+|++++++++|+||+++++++.+. ...++||||++ ++|.+++..
T Consensus        16 ~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~-~~l~~~~~~   93 (294)
T PLN00009         16 GVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSE-KRLYLVFEYLD-LDLKKHMDS   93 (294)
T ss_pred             EEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecC-CeEEEEEeccc-ccHHHHHHh
Confidence            48999987  68899999875         2467899999999999999999998754 47999999996 588888765


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC-CCcEEEeecCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS-RFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-~~~~kl~DFGla~~~~--------  482 (615)
                      ....        .+++.....++.|++.||+|||+++   ++||||||+||+++. ++.+||+|||++....        
T Consensus        94 ~~~~--------~~~~~~~~~~~~qi~~aL~~LH~~~---i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~~~~~~  162 (294)
T PLN00009         94 SPDF--------AKNPRLIKTYLYQILRGIAYCHSHR---VLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTH  162 (294)
T ss_pred             CCCC--------CcCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCcceEEEECCCCEEEEcccccccccCCCcccccc
Confidence            4321        2678889999999999999999997   999999999999985 5679999999885321        


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH--HHH---------HH
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE--EKR---------EE  535 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~--~~~---------~~  535 (615)
                                      ...+.++|||||||++|||++|+.|+......+.  ... +...+...  ...         ..
T Consensus       163 ~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~  239 (294)
T PLN00009        163 EVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDE--LFK-IFRILGTPNEETWPGVTSLPDYKS  239 (294)
T ss_pred             CceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH--HHH-HHHHhCCCChhhccccccchhhhh
Confidence                            1135689999999999999999999875432111  111 11100000  000         00


Q ss_pred             HHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          536 RLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       536 ~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ....+....+. .........+.+++.+|++.+|++||++.++++.
T Consensus       240 ~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~~  284 (294)
T PLN00009        240 AFPKWPPKDLA-TVVPTLEPAGVDLLSKMLRLDPSKRITARAALEH  284 (294)
T ss_pred             hcccCCCCCHH-HhCcCCChHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            00000000000 0111223457899999999999999999999874

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=2.6e-27  Score=240.36  Aligned_cols=205  Identities=23%  Similarity=0.319  Sum_probs=161.3

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------------HHHHHHHHHHHhcCCCCcccEEEEEEcCC-CcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK------------EDVTEELRILQRINHANLVKLMGVSSDSQ-GNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~-~~~~lV~E~~~~GsL~~  407 (615)
                      +.||++..  +|+.+|+|.+.            ..+.+|++++++++|+||+++++++.+.+ +..++++||+++++|.+
T Consensus        16 g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~L~~   95 (264)
T cd06653          16 GEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKLSIFVEYMPGGSIKD   95 (264)
T ss_pred             eEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEEEEEEEeCCCCcHHH
Confidence            48999986  68999999863            24678999999999999999999886543 34789999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++....          .+++....+++.|++.||.|||+++   ++|+||||+||+++.++.++|+|||+++...     
T Consensus        96 ~~~~~~----------~l~~~~~~~~~~~i~~al~~LH~~~---i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~  162 (264)
T cd06653          96 QLKAYG----------ALTENVTRRYTRQILQGVSYLHSNM---IVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMS  162 (264)
T ss_pred             HHHHcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCCCEEECcccccccccccccc
Confidence            987543          2789999999999999999999998   9999999999999999999999999885321     


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                           ...+.++|||||||++|||++|+.||.......      .+              .+..
T Consensus       163 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~------~~--------------~~~~  222 (264)
T cd06653         163 GTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEAMA------AI--------------FKIA  222 (264)
T ss_pred             CccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccCHHH------HH--------------HHHH
Confidence                                 113467899999999999999999986432110      00              0111


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ........+......+.+++..|++ +|.+||+..+++.+
T Consensus       223 ~~~~~~~~p~~~~~~~~~~i~~~l~-~~~~r~~~~~~~~~  261 (264)
T cd06653         223 TQPTKPMLPDGVSDACRDFLKQIFV-EEKRRPTAEFLLRH  261 (264)
T ss_pred             cCCCCCCCCcccCHHHHHHHHHHhc-CcccCccHHHHhcC
Confidence            1111123344455668999999999 57999999988753

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=9.5e-29  Score=262.06  Aligned_cols=207  Identities=24%  Similarity=0.362  Sum_probs=167.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccH-------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE-------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~-------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||-|..  +...+|||.+.+       -..+||.+.++++|+|||+++|.|.+ +|.+-+.||.+|+|||.+.|+...
T Consensus       589 G~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~se-nGf~kIFMEqVPGGSLSsLLrskW  667 (1226)
T KOG4279|consen  589 GTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSE-NGFFKIFMEQVPGGSLSSLLRSKW  667 (1226)
T ss_pred             eEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCC-CCeEEEEeecCCCCcHHHHHHhcc
Confidence            47887776  345689998863       26789999999999999999998764 568889999999999999998765


Q ss_pred             CCCCCCCccccc--CHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC-CCcEEEeecCCCCCCC--------
Q 047629          414 KSSSSSGSVIFL--TWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS-RFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l--~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-~~~~kl~DFGla~~~~--------  482 (615)
                      +.         |  .+..+-.+.+||+.||.|||++.   |||||||-.|+|++. .|.+||+|||-++.+.        
T Consensus       668 GP---------lKDNEstm~fYtkQILeGLkYLHen~---IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TET  735 (1226)
T KOG4279|consen  668 GP---------LKDNESTMNFYTKQILEGLKYLHENK---IVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTET  735 (1226)
T ss_pred             CC---------CccchhHHHHHHHHHHHHhhhhhhcc---eeeccccCCcEEEeeccceEEecccccchhhccCCccccc
Confidence            42         4  67778889999999999999998   999999999999975 6899999999886541        


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                       ..+.+++|||||||++.||.|||+||....+.......     +   +       .    -..
T Consensus       736 FTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFk-----V---G-------m----yKv  796 (1226)
T KOG4279|consen  736 FTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFK-----V---G-------M----YKV  796 (1226)
T ss_pred             cccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhh-----h---c-------c----eec
Confidence                             23567899999999999999999999866543222110     0   0       0    011


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ....|.+...+...++++|..+||.+||+++++++.
T Consensus       797 HP~iPeelsaeak~FilrcFepd~~~R~sA~~LL~D  832 (1226)
T KOG4279|consen  797 HPPIPEELSAEAKNFILRCFEPDPCDRPSAKDLLQD  832 (1226)
T ss_pred             CCCCcHHHHHHHHHHHHHHcCCCcccCccHHHhccC
Confidence            234577777888999999999999999999999885

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.95  E-value=4.6e-28  Score=255.19  Aligned_cols=219  Identities=23%  Similarity=0.353  Sum_probs=160.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCC----CcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQ----GNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~----~~~~lV~E~~~~GsL~~~  408 (615)
                      +.||+|..  +|+.||||+++        ..+.+|+.++++++|+||+++++++....    ...++++||+++ +|.++
T Consensus        19 g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~   97 (336)
T cd07849          19 GMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDVYIVQELMET-DLYKL   97 (336)
T ss_pred             eEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceEEEEehhccc-CHHHH
Confidence            48999986  68999999875        23667999999999999999999875432    247999999974 88888


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      +...           .+++..+..++.|++.||+|||+.+   |+||||||+||+++.++.+||+|||+++...      
T Consensus        98 ~~~~-----------~l~~~~~~~i~~ql~~aL~~LH~~~---ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~  163 (336)
T cd07849          98 IKTQ-----------HLSNDHIQYFLYQILRGLKYIHSAN---VLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHT  163 (336)
T ss_pred             HhcC-----------CCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHEEECCCCCEEECcccceeecccccccc
Confidence            7543           2889999999999999999999998   9999999999999999999999999875321      


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                           ...+.++|||||||++|||++|+.|+......   ..+..+...+....  .+.+....
T Consensus       164 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~  238 (336)
T cd07849         164 GFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYL---HQLNLILGVLGTPS--QEDLNCII  238 (336)
T ss_pred             CCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH---HHHHHHHHHcCCCC--HHHHHHhh
Confidence                                 11345789999999999999999998654321   11111211111000  00011111


Q ss_pred             CCc-------C--CCCCC-----hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 DPN-------L--ESFYP-----IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp~-------l--~~~~~-----~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +..       +  ....+     ......+.+++.+||+.||++||++.|++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~h  292 (336)
T cd07849         239 SLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAH  292 (336)
T ss_pred             chhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            000       0  00000     1123458899999999999999999999987

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=7.9e-28  Score=248.03  Aligned_cols=198  Identities=22%  Similarity=0.386  Sum_probs=163.9

Q ss_pred             EECCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCC
Q 047629          349 TIDGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSS  419 (615)
Q Consensus       349 ~~~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~  419 (615)
                      ++.|+.||||++.+         .+.+|+.+|+-++|||||+|+.+. +....+|||+|.-.+|+|.+|+-.+..     
T Consensus        40 VFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEVi-DTQTKlyLiLELGD~GDl~DyImKHe~-----  113 (864)
T KOG4717|consen   40 VFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVI-DTQTKLYLILELGDGGDLFDYIMKHEE-----  113 (864)
T ss_pred             hcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehh-cccceEEEEEEecCCchHHHHHHhhhc-----
Confidence            35899999999863         467899999999999999999985 456689999999999999999987664     


Q ss_pred             CcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC-CcEEEeecCCCCCCC----------------
Q 047629          420 GSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR-FKAKIANFSLAAPAT----------------  482 (615)
Q Consensus       420 ~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-~~~kl~DFGla~~~~----------------  482 (615)
                          .|.+....+++.||..++.|.|...   +|||||||+|+.+-+. |-+||.|||++..+.                
T Consensus       114 ----Gl~E~La~kYF~QI~~AI~YCHqLH---VVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~kL~TsCGSLAYSA  186 (864)
T KOG4717|consen  114 ----GLNEDLAKKYFAQIVHAISYCHQLH---VVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKKLTTSCGSLAYSA  186 (864)
T ss_pred             ----cccHHHHHHHHHHHHHHHHHHhhhh---hhcccCCcceeEEeeecCceEeeeccccccCCCcchhhcccchhhccC
Confidence                3889999999999999999999987   9999999999987665 889999999984431                


Q ss_pred             ------CC-CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHH
Q 047629          483 ------ND-VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGAL  555 (615)
Q Consensus       483 ------~~-~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~  555 (615)
                            +. -.+++||||+||+||.|++|+.||....+.+.+                    -.+||=  +-..|.....
T Consensus       187 PEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSETL--------------------TmImDC--KYtvPshvS~  244 (864)
T KOG4717|consen  187 PEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSETL--------------------TMIMDC--KYTVPSHVSK  244 (864)
T ss_pred             chhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchhhh--------------------hhhhcc--cccCchhhhH
Confidence                  11 236899999999999999999999876654432                    223432  1234556666


Q ss_pred             HHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          556 SLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       556 ~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +..+|+..++..||++|.+..||+..
T Consensus       245 eCrdLI~sMLvRdPkkRAslEeI~s~  270 (864)
T KOG4717|consen  245 ECRDLIQSMLVRDPKKRASLEEIVST  270 (864)
T ss_pred             HHHHHHHHHHhcCchhhccHHHHhcc
Confidence            78999999999999999999999875

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.95  E-value=9.9e-28  Score=249.38  Aligned_cols=221  Identities=28%  Similarity=0.350  Sum_probs=161.9

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCC-CcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQ-GNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~-~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||+|..  +|+.||+|.++.         .+.+|+.++++++|+||+++++++.+.+ +..++||||++ ++|.+++.
T Consensus        21 ~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~   99 (309)
T cd07845          21 GIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFLVMEYCE-QDLASLLD   99 (309)
T ss_pred             EEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEEEEecCC-CCHHHHHH
Confidence            58999987  689999998852         2457999999999999999999986543 35899999997 58988887


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ....         .+++.++..++.|++.||.|||+.+   ++||||||+||++++++.+||+|||++....        
T Consensus       100 ~~~~---------~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~  167 (309)
T cd07845         100 NMPT---------PFSESQVKCLMLQLLRGLQYLHENF---IIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPMTP  167 (309)
T ss_pred             hccc---------CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEECccceeeecCCccCCCCc
Confidence            5432         3899999999999999999999998   9999999999999999999999999875421        


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCC---
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDP---  543 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp---  543 (615)
                                      ...+.++||||||+++|||++|+.|+......+.   ...+........  ......+.+.   
T Consensus       168 ~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~  242 (309)
T cd07845         168 KVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQ---LDLIIQLLGTPN--ESIWPGFSDLPLV  242 (309)
T ss_pred             ccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHHhcCCCC--hhhchhhhccccc
Confidence                            1135689999999999999999999875442211   111111110000  0000000000   


Q ss_pred             ---cCCC-CCC------hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          544 ---NLES-FYP------IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       544 ---~l~~-~~~------~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                         .+.. .+.      ......+.+++..|++.||++|||+.|++.+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~h  290 (309)
T cd07845         243 GKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALES  290 (309)
T ss_pred             ccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence               0000 000      0123456899999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.95  E-value=1.4e-27  Score=251.48  Aligned_cols=220  Identities=25%  Similarity=0.372  Sum_probs=161.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhc-CCCCcccEEEEEEcCCC-cEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRI-NHANLVKLMGVSSDSQG-NRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~-~~~lV~E~~~~GsL~~~L  409 (615)
                      +.||+|..  +|+.+|+|++..         .+.+|+.++.++ +|+||+++++++...++ ..++||||++ ++|..++
T Consensus        21 ~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~   99 (337)
T cd07852          21 GIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIYLVFEYME-TDLHAVI   99 (337)
T ss_pred             eeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEEEEecccc-cCHHHHH
Confidence            48999987  689999998742         356799999999 99999999998864433 4799999997 5999998


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      ...           .++|..+..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||+++...       
T Consensus       100 ~~~-----------~~~~~~~~~i~~qi~~~L~~LH~~~---i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~~~~~  165 (337)
T cd07852         100 RAN-----------ILEDVHKRYIMYQLLKALKYIHSGN---VIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPE  165 (337)
T ss_pred             hcC-----------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCcEEEeeccchhcccccccccc
Confidence            653           2789999999999999999999987   9999999999999999999999999885321       


Q ss_pred             ----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhH---H---HHHH
Q 047629          483 ----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV---E---EKRE  534 (615)
Q Consensus       483 ----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~---~---~~~~  534 (615)
                                            ...+.++||||||+++|||++|+.|+......+...   .+......   .   ....
T Consensus       166 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  242 (337)
T cd07852         166 NPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLE---KIIEVIGPPSAEDIESIKS  242 (337)
T ss_pred             CcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHH---HHHHHhCCCCHHHHHHHHh
Confidence                                  113457999999999999999999986543221111   01000000   0   0000


Q ss_pred             HHHhhhcC----C---cCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          535 ERLRNWMD----P---NLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       535 ~~~~~~~d----p---~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .....+++    .   .+.... .+....+.+++.+||+.||.+|||+.++++.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~li~~~l~~~P~~Rps~~~il~~  295 (337)
T cd07852         243 PFAATMLDSLPSRPRKPLDELL-PKASDDALDLLKKLLVFNPNKRLTAEEALEH  295 (337)
T ss_pred             hhHHHhhhhcccccccchhhhc-cCCCHHHHHHHHHhccCCcccccCHHHHhhC
Confidence            00011111    0   011111 1234568999999999999999999999985

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.95  E-value=1.5e-27  Score=247.28  Aligned_cols=226  Identities=23%  Similarity=0.339  Sum_probs=159.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCC-------CcEEEEEeecCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQ-------GNRFLVYEYAENGS  404 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~-------~~~~lV~E~~~~Gs  404 (615)
                      +.||++..  +|+.||||.+..         .+.+|++++++++|+||++++++|...+       ...++||||++ ++
T Consensus        26 ~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~  104 (310)
T cd07865          26 GEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRYKGSFYLVFEFCE-HD  104 (310)
T ss_pred             EEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCCCceEEEEEcCCC-cC
Confidence            48999987  689999998742         3467999999999999999999986432       23599999997 48


Q ss_pred             HHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--
Q 047629          405 LDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--  482 (615)
Q Consensus       405 L~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--  482 (615)
                      |.+++.....         .+++.++..++.|++.||+|||+++   ++|+||||+||+++.++.+||+|||++....  
T Consensus       105 l~~~l~~~~~---------~~~~~~~~~i~~qi~~al~~lH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~  172 (310)
T cd07865         105 LAGLLSNKNV---------KFTLSEIKKVMKMLLNGLYYIHRNK---ILHRDMKAANILITKDGILKLADFGLARAFSLS  172 (310)
T ss_pred             HHHHHHhccc---------CCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEECCCCcEEECcCCCcccccCC
Confidence            8888865432         3899999999999999999999998   9999999999999999999999999885321  


Q ss_pred             --------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHH---
Q 047629          483 --------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKR---  533 (615)
Q Consensus       483 --------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~---  533 (615)
                                                ...++++||||||+++|||++|+.|+..............+......+...   
T Consensus       173 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (310)
T cd07865         173 KNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSITPEVWPGVD  252 (310)
T ss_pred             cccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccccc
Confidence                                      013467999999999999999999987544322211111111000000000   


Q ss_pred             -HHHHhhhcCCc-----CCCCC-ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          534 -EERLRNWMDPN-----LESFY-PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       534 -~~~~~~~~dp~-----l~~~~-~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       .........+.     ..... +......+.+++..||+.||.+|||++|+++.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~h  307 (310)
T cd07865         253 KLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALNH  307 (310)
T ss_pred             chhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhcC
Confidence             00000000000     00000 00112346799999999999999999999853

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.95  E-value=8e-28  Score=246.21  Aligned_cols=223  Identities=22%  Similarity=0.350  Sum_probs=163.6

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH--------HHHHHHHHHhcC-CCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIKED--------VTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~--------~~~Ei~~l~~l~-H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||+|..  +++.||||++...        ..+|+..+.+++ |+|++++++++.+ ++..++||||+ +|+|.+++..
T Consensus        13 g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~-~~~~~lv~e~~-~~~l~~~~~~   90 (283)
T cd07830          13 GSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRE-NDELYFVFEYM-EGNLYQLMKD   90 (283)
T ss_pred             eEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhc-CCcEEEEEecC-CCCHHHHHHh
Confidence            58999998  5789999998642        346899999998 9999999999876 45799999999 8899999876


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--------  483 (615)
                      ....        .++|.++..++.|++.+|.|||+++   ++|+||||+||++++++.++|+|||++.....        
T Consensus        91 ~~~~--------~~~~~~~~~~~~~l~~~l~~Lh~~~---i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~  159 (283)
T cd07830          91 RKGK--------PFSESVIRSIIYQILQGLAHIHKHG---FFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPPYTDYV  159 (283)
T ss_pred             cccc--------cCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChhhEEEcCCCCEEEeecccceeccCCCCcCCCC
Confidence            5421        3899999999999999999999998   99999999999999999999999998853311        


Q ss_pred             ---------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhH---HH-HHHHHHhhhcCCc
Q 047629          484 ---------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV---EE-KREERLRNWMDPN  544 (615)
Q Consensus       484 ---------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~---~~-~~~~~~~~~~dp~  544 (615)
                                     ..+.++||||||+++|||++|+.|+......+...   .....+..   .. .....+.+.++..
T Consensus       160 ~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (283)
T cd07830         160 STRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLY---KICSVLGTPTKQDWPEGYKLASKLGFR  236 (283)
T ss_pred             CcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHH---HHHHhcCCCChhhhhhHhhhhcccccc
Confidence                           13468999999999999999999886543221110   01110000   00 0000011111111


Q ss_pred             CC-------CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          545 LE-------SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       545 l~-------~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +.       ..........+.+++.+||+.||++||+++|++.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~  280 (283)
T cd07830         237 FPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQH  280 (283)
T ss_pred             ccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhhC
Confidence            10       00111123568999999999999999999999764

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.95  E-value=2.2e-27  Score=249.37  Aligned_cols=234  Identities=23%  Similarity=0.319  Sum_probs=168.7

Q ss_pred             HHccccccccccc----ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEE
Q 047629          330 ESTMNLSEHYSIG----KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRF  394 (615)
Q Consensus       330 ~at~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~  394 (615)
                      ..+++|.....+|    +.||++..  +|+.||||++.         +.+.+|++++.+++||||+++.+++.......+
T Consensus         7 ~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~   86 (328)
T cd07856           7 EITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLEDIY   86 (328)
T ss_pred             ccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCcEE
Confidence            3445555555554    48999876  78999999763         356789999999999999999998875555789


Q ss_pred             EEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEee
Q 047629          395 LVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIAN  474 (615)
Q Consensus       395 lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  474 (615)
                      +++||+ +++|.+++...           .+++.....++.|++.||.|||+.+   ++||||||+||++++++.+||+|
T Consensus        87 lv~e~~-~~~L~~~~~~~-----------~~~~~~~~~~~~ql~~aL~~LH~~~---iiH~dl~p~Nili~~~~~~~l~d  151 (328)
T cd07856          87 FVTELL-GTDLHRLLTSR-----------PLEKQFIQYFLYQILRGLKYVHSAG---VVHRDLKPSNILINENCDLKICD  151 (328)
T ss_pred             EEeehh-ccCHHHHHhcC-----------CCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEeECCCCCEEeCc
Confidence            999998 56899888643           2778888899999999999999998   99999999999999999999999


Q ss_pred             cCCCCCCC---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhH--HH
Q 047629          475 FSLAAPAT---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV--EE  531 (615)
Q Consensus       475 FGla~~~~---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~--~~  531 (615)
                      ||++....                     ...+.++||||||+++|||++|+.|+..........   .+...+..  ++
T Consensus       152 fg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~---~~~~~~~~~~~~  228 (328)
T cd07856         152 FGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFS---IITDLLGTPPDD  228 (328)
T ss_pred             cccccccCCCcCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH---HHHHHhCCCCHH
Confidence            99875321                     124567999999999999999999986544211111   11111100  00


Q ss_pred             H-----HHHHHhhhcCCcCCCCCCh-----HHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          532 K-----REERLRNWMDPNLESFYPI-----DGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       532 ~-----~~~~~~~~~dp~l~~~~~~-----~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .     ......-+.+-......+.     .....+.+++.+|++.+|++||++.|++..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~  288 (328)
T cd07856         229 VINTICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAH  288 (328)
T ss_pred             HHHhccchhhHHHHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            0     0000000001011111111     234578999999999999999999999886

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.95  E-value=3.7e-27  Score=241.49  Aligned_cols=222  Identities=23%  Similarity=0.356  Sum_probs=160.3

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhc---CCCCcccEEEEEEcCCC----cEEEEEeecCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRI---NHANLVKLMGVSSDSQG----NRFLVYEYAENGS  404 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l---~H~niv~l~g~~~~~~~----~~~lV~E~~~~Gs  404 (615)
                      +.||+|..  +|+.+|+|+++.         .+.+|++++.++   +|+|++++++++...+.    ..+++|||++ ++
T Consensus        13 ~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~l~~e~~~-~~   91 (287)
T cd07838          13 GTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELKLTLVFEHVD-QD   91 (287)
T ss_pred             eEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCceeEEEehhcc-cC
Confidence            58999998  489999999862         355788887766   59999999999876542    2899999997 58


Q ss_pred             HHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--
Q 047629          405 LDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--  482 (615)
Q Consensus       405 L~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--  482 (615)
                      |.+++......        .++|.++..++.|++.||.|||+.+   ++|+||||+||+++.++.+||+|||++....  
T Consensus        92 l~~~l~~~~~~--------~l~~~~~~~~~~~i~~al~~LH~~~---i~h~~l~~~nili~~~~~~~l~dfg~~~~~~~~  160 (287)
T cd07838          92 LATYLSKCPKP--------GLPPETIKDLMRQLLRGVDFLHSHR---IVHRDLKPQNILVTSDGQVKIADFGLARIYSFE  160 (287)
T ss_pred             HHHHHHHccCC--------CCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCChhhEEEccCCCEEEeccCcceeccCC
Confidence            99988754321        3899999999999999999999998   9999999999999999999999999885532  


Q ss_pred             --------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHH--------
Q 047629          483 --------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKRE--------  534 (615)
Q Consensus       483 --------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~--------  534 (615)
                                          ...+.++||||||+++|||++|+.|+......+.   ...+...........        
T Consensus       161 ~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  237 (287)
T cd07838         161 MALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQ---LDKIFDVIGLPSEEEWPRNVSLP  237 (287)
T ss_pred             cccccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChHHH---HHHHHHHcCCCChHhcCCCcccc
Confidence                                1134589999999999999999988875432211   111111100000000        


Q ss_pred             -HHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          535 -ERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       535 -~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                       ........... .....+....+.+++.+||+.||.+||++.|++.
T Consensus       238 ~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~  283 (287)
T cd07838         238 RSSFPSYTPRSF-KSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQ  283 (287)
T ss_pred             hhhcccccccch-hhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhc
Confidence             00000000000 1111133456789999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=2.2e-27  Score=240.00  Aligned_cols=208  Identities=20%  Similarity=0.215  Sum_probs=156.9

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHH-HhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRIL-QRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l-~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      +.||++..  +|+.||||.++..          +..|..++ ...+|+|++++++++... ...++|+||+++|+|.+++
T Consensus        10 ~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l   88 (260)
T cd05611          10 GSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSK-DYLYLVMEYLNGGDCASLI   88 (260)
T ss_pred             eeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcC-CeEEEEEeccCCCCHHHHH
Confidence            48999987  6899999988531          23344443 345899999999998754 4799999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      ....          .+++.++..++.|++.||.|||+.+   ++||||+|+||++++++.+||+|||+++...       
T Consensus        89 ~~~~----------~~~~~~~~~i~~qi~~aL~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~  155 (260)
T cd05611          89 KTLG----------GLPEDWAKQYIAEVVLGVEDLHQRG---IIHRDIKPENLLIDQTGHLKLTDFGLSRNGLENKKFVG  155 (260)
T ss_pred             HHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCcEEEeecccceeccccccCCC
Confidence            7543          2788999999999999999999987   9999999999999999999999999875421       


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  ...+.++||||||+++|||++|+.|+......   ..+..+.             ....+  ......
T Consensus       156 ~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~---~~~~~~~-------------~~~~~--~~~~~~  217 (260)
T cd05611         156 TPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPD---AVFDNIL-------------SRRIN--WPEEVK  217 (260)
T ss_pred             CcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHH---HHHHHHH-------------hcccC--CCCccc
Confidence                        12356899999999999999999998654321   1111000             00000  011111


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      ......+.+++..||+.+|++||++.++.+.|
T Consensus       218 ~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l  249 (260)
T cd05611         218 EFCSPEAVDLINRLLCMDPAKRLGANGYQEIK  249 (260)
T ss_pred             ccCCHHHHHHHHHHccCCHHHccCCCcHHHHH
Confidence            12345689999999999999999876665544

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.95  E-value=5.6e-27  Score=244.50  Aligned_cols=205  Identities=27%  Similarity=0.410  Sum_probs=160.5

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||+|..  +|+.||+|++.          ..+.+|++++++++|+|++++.+++.+. ...++||||+. |+|.+++.
T Consensus        35 g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~-~~l~~~l~  112 (313)
T cd06633          35 GAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKE-HTAWLVMEYCL-GSASDLLE  112 (313)
T ss_pred             eEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeC-CEEEEEEecCC-CCHHHHHH
Confidence            58999987  68999999875          2467899999999999999999998764 47899999996 68888876


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ....         .++|.++..++.|++.||.|||+.+   ++||||||+||+++.++.+||+|||++....        
T Consensus       113 ~~~~---------~l~~~~~~~~~~qi~~al~~LH~~g---i~H~dl~p~nili~~~~~~kL~dfg~~~~~~~~~~~~~~  180 (313)
T cd06633         113 VHKK---------PLQEVEIAAITHGALQGLAYLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSASKSSPANSFVGT  180 (313)
T ss_pred             hcCC---------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCChhhEEECCCCCEEEeecCCCcccCCCCCcccc
Confidence            5432         3899999999999999999999998   9999999999999999999999999875321        


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                    ...+.++|||||||++|||++|+.|+........      ...           ......+...  
T Consensus       181 ~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~~~~------~~~-----------~~~~~~~~~~--  241 (313)
T cd06633         181 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA------LYH-----------IAQNDSPTLQ--  241 (313)
T ss_pred             ccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCChHHH------HHH-----------HHhcCCCCCC--
Confidence                          1245678999999999999999999865432110      000           0000011111  


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       .......+.+++.+||+.+|.+||++.+++..
T Consensus       242 -~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~~  273 (313)
T cd06633         242 -SNEWTDSFRGFVDYCLQKIPQERPASAELLRH  273 (313)
T ss_pred             -ccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence             11122357899999999999999999999975

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.95  E-value=4.7e-27  Score=242.63  Aligned_cols=205  Identities=24%  Similarity=0.387  Sum_probs=161.7

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      +.||++..  +|+.||||++.       ..+.+|+.++++++|+|++++++++...+ ..++||||+++++|.+++... 
T Consensus        34 g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-~~~lv~e~~~~~~L~~~~~~~-  111 (292)
T cd06657          34 GIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGD-ELWVVMEFLEGGALTDIVTHT-  111 (292)
T ss_pred             eEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCC-EEEEEEecCCCCcHHHHHhcC-
Confidence            58999987  78999999874       24778999999999999999999987644 789999999999999988542 


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                                .+++.....++.|++.||+|||+.+   ++|+||||+||++++++.++|+|||++....           
T Consensus       112 ----------~~~~~~~~~~~~ql~~~l~~lH~~g---ivH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~  178 (292)
T cd06657         112 ----------RMNEEQIAAVCLAVLKALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVG  178 (292)
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEEcccccceeccccccccccccc
Confidence                      2789999999999999999999998   9999999999999999999999999864321           


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  ...+.++||||||+++|||++|+.|+......+.   .   .           .+.....+.+..  .
T Consensus       179 ~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~~~---~---~-----------~~~~~~~~~~~~--~  239 (292)
T cd06657         179 TPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA---M---K-----------MIRDNLPPKLKN--L  239 (292)
T ss_pred             CccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH---H---H-----------HHHhhCCcccCC--c
Confidence                        1235689999999999999999999864331110   0   0           011111122111  1


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ......+.+++.+||+.+|.+||++.|++.+
T Consensus       240 ~~~~~~l~~li~~~l~~~P~~R~~~~~ll~~  270 (292)
T cd06657         240 HKVSPSLKGFLDRLLVRDPAQRATAAELLKH  270 (292)
T ss_pred             ccCCHHHHHHHHHHHhCCcccCcCHHHHhcC
Confidence            1123357889999999999999999999884

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.95  E-value=3.2e-27  Score=250.57  Aligned_cols=220  Identities=21%  Similarity=0.310  Sum_probs=160.9

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCC-----CcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQ-----GNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~-----~~~~lV~E~~~~GsL~  406 (615)
                      +.||++..  +|+.||+|.+..         .+.+|+.++++++|+||+++++++....     ...++||||+. |+|.
T Consensus        30 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~  108 (353)
T cd07850          30 GIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEFQDVYLVMELMD-ANLC  108 (353)
T ss_pred             EEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccccCcEEEEEeccC-CCHH
Confidence            47999986  789999998852         3567999999999999999999875322     24699999996 5888


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC---
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN---  483 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~---  483 (615)
                      +++..            .+++.++..++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++....   
T Consensus       109 ~~~~~------------~l~~~~~~~~~~ql~~aL~~LH~~g---i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~  173 (353)
T cd07850         109 QVIQM------------DLDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM  173 (353)
T ss_pred             HHHhh------------cCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEECCCCCEEEccCccceeCCCCCC
Confidence            88753            1778889999999999999999998   99999999999999999999999999864321   


Q ss_pred             -------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH-----HHHHHHHhh
Q 047629          484 -------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE-----EKREERLRN  539 (615)
Q Consensus       484 -------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~  539 (615)
                                         .++.++|||||||++|||++|+.||...+..   ..+..+...+...     .........
T Consensus       174 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (353)
T cd07850         174 MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHI---DQWNKIIEQLGTPSDEFMSRLQPTVRN  250 (353)
T ss_pred             CCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCHH---HHHHHHHHhcCCCCHHHHHHhhhhhhH
Confidence                               2456899999999999999999998754321   1122111111000     000000111


Q ss_pred             hcCC-------------------cCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          540 WMDP-------------------NLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       540 ~~dp-------------------~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .++.                   ......+......+.+++.+|++.||++|||+.|++..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~~  311 (353)
T cd07850         251 YVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQH  311 (353)
T ss_pred             HhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            1110                   00011112335567899999999999999999999975

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.95  E-value=5.1e-27  Score=235.76  Aligned_cols=208  Identities=26%  Similarity=0.393  Sum_probs=165.1

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||++..  +++.+|+|++..         .+.+|++++++++|+|++++.+.+... +..++|+||+++++|.+++..
T Consensus        14 ~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~   92 (258)
T cd08215          14 GKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEK-GKLCIVMEYADGGDLSQKIKK   92 (258)
T ss_pred             eEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecC-CEEEEEEEecCCCcHHHHHHH
Confidence            48999998  489999999852         367899999999999999999988754 578999999999999999976


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--------  483 (615)
                      .....      ..+++.++..++.+++.||.|||+++   ++|+||+|+||+++.++.++|+|||++.....        
T Consensus        93 ~~~~~------~~~~~~~~~~i~~~i~~~l~~lh~~~---~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~  163 (258)
T cd08215          93 QKKEG------KPFPEEQILDWFVQLCLALKYLHSRK---ILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTV  163 (258)
T ss_pred             hhccC------CCcCHHHHHHHHHHHHHHHHHHHhCC---EecccCChHHeEEcCCCcEEECCccceeecccCcceecce
Confidence            53110      14899999999999999999999997   99999999999999999999999998754311        


Q ss_pred             ---------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          484 ---------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       484 ---------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                     ..+.++||||+|++++||++|+.|+......+       +.         ....... -+    .
T Consensus       164 ~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~-------~~---------~~~~~~~-~~----~  222 (258)
T cd08215         164 VGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENLLE-------LA---------LKILKGQ-YP----P  222 (258)
T ss_pred             eeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCcHHH-------HH---------HHHhcCC-CC----C
Confidence                           23568999999999999999999986543110       00         0001111 11    1


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+......+.+++.+||+.+|++||++.|+++.
T Consensus       223 ~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~  255 (258)
T cd08215         223 IPSQYSSELRNLVSSLLQKDPEERPSIAQILQS  255 (258)
T ss_pred             CCCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            222344568899999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.95  E-value=3.1e-27  Score=241.66  Aligned_cols=208  Identities=23%  Similarity=0.300  Sum_probs=160.8

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||++..  +|+.+|+|.+..          .+..|++++++++|+|++++.+++.. ++..++|+||+++|+|.+++.
T Consensus         7 g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~   85 (277)
T cd05577           7 GEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFET-KDDLCLVMTLMNGGDLKYHIY   85 (277)
T ss_pred             eeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEec-CCeEEEEEecCCCCcHHHHHH
Confidence            47999886  689999998752          24679999999999999999998865 447999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      .....        .+++.++..++.|++.||.|||+.+   ++||||||+||++++++.+||+|||++....        
T Consensus        86 ~~~~~--------~~~~~~~~~~~~ql~~~l~~lH~~~---i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~  154 (277)
T cd05577          86 NVGEP--------GFPEARAIFYAAQIICGLEHLHQRR---IVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGR  154 (277)
T ss_pred             HcCcC--------CCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEECCCCCEEEccCcchhhhccCCccccc
Confidence            64421        3899999999999999999999998   9999999999999999999999999875321        


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                    ...+.++|||||||+++||++|+.||.........   ..+..          .... .    ...
T Consensus       155 ~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~---~~~~~----------~~~~-~----~~~  216 (277)
T cd05577         155 AGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEK---EELKR----------RTLE-M----AVE  216 (277)
T ss_pred             cCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccH---HHHHh----------cccc-c----ccc
Confidence                          11355799999999999999999998754421110   00000          0000 0    112


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRP-----NMAEVVF  580 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~  580 (615)
                      ++......+.+++..||+.||.+||     ++.+++.
T Consensus       217 ~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~  253 (277)
T cd05577         217 YPDKFSPEAKDLCEALLQKDPEKRLGCRGGSADEVRE  253 (277)
T ss_pred             CCccCCHHHHHHHHHHccCChhHccCCCcccHHHHHh
Confidence            2233345678999999999999999     5555554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.95  E-value=1.6e-27  Score=255.10  Aligned_cols=226  Identities=21%  Similarity=0.284  Sum_probs=166.0

Q ss_pred             ceEEEEEE--CCeEEEEEEccH------HHHHHHHHHHhcC-C-----CCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGKVLAVKKIKE------DVTEELRILQRIN-H-----ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~------~~~~Ei~~l~~l~-H-----~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.|-|+..  +++.||||+++.      +...|+.+|..++ |     -|+|++++++... ++++||+|.+.. +|.++
T Consensus       200 GQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr-~HlciVfELL~~-NLYel  277 (586)
T KOG0667|consen  200 GQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFR-NHLCIVFELLST-NLYEL  277 (586)
T ss_pred             ceeEEEEecCCCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccc-cceeeeehhhhh-hHHHH
Confidence            47888876  689999999984      3457999999997 4     4899999998754 589999999976 99999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC--CcEEEeecCCCCCCC----
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR--FKAKIANFSLAAPAT----  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~--~~~kl~DFGla~~~~----  482 (615)
                      |+.+...        .|+...+..|+.||+.||.+||+.+   |||+||||+||||.+-  ..+||.|||.|....    
T Consensus       278 lK~n~f~--------Glsl~~ir~~~~Qil~~L~~L~~l~---IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~vy  346 (586)
T KOG0667|consen  278 LKNNKFR--------GLSLPLVRKFAQQILTALLFLHELG---IIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQRVY  346 (586)
T ss_pred             HHhcCCC--------CCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCChhheeeccCCcCceeEEecccccccCCcce
Confidence            9987764        4899999999999999999999998   9999999999999754  479999999996543    


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHH-----hHHHHH--------
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVL-----KVEEKR--------  533 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~-----~~~~~~--------  533 (615)
                                      ..+..+.||||||||+.||++|.+-|.+..+.+.....-++...+     ......        
T Consensus       347 tYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~ne~DQl~~I~e~lG~Pp~~mL~~~~~~~kff~~~~  426 (586)
T KOG0667|consen  347 TYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGDNEYDQLARIIEVLGLPPPKMLDTAKKAHKFFTSLK  426 (586)
T ss_pred             eeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCCCHHHHHHHHHHHhCCCCHHHHHhccccceehhccC
Confidence                            236789999999999999999977666544333222111111000     000000        


Q ss_pred             --------------------HHH----HhhhcCC-c---CCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          534 --------------------EER----LRNWMDP-N---LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       534 --------------------~~~----~~~~~dp-~---l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                                          ...    ..+..-| .   +....+...-..+++++++|++.||.+|+|..|.+++
T Consensus       427 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~P~~~~~l~~~~~~~~~~~F~dflk~~L~~dP~~R~tp~qal~H  502 (586)
T KOG0667|consen  427 GFPRLCVETSAPRGTKSPEVRKYYRKARLERRGPPGSRSLESGLPKADDKLFIDFLKRCLEWDPAERITPAQALNH  502 (586)
T ss_pred             CceeeeeeecccccccchhhhhhhhhhcccccCCCCCcccchhcccccHHHHHHHHHHHhccCchhcCCHHHHhcC
Confidence                                000    0000011 0   1111122344568999999999999999999999886

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=5.3e-27  Score=235.49  Aligned_cols=203  Identities=26%  Similarity=0.446  Sum_probs=162.7

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||++..  +++.+|+|.+.         ..+.+|++++.+++|+|++++++++.+. +..++++||+++++|.+++..
T Consensus        14 ~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-~~~~~v~e~~~~~~L~~~~~~   92 (254)
T cd06627          14 GVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETS-DSLYIILEYAENGSLRQIIKK   92 (254)
T ss_pred             eEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeC-CEEEEEEecCCCCcHHHHHHh
Confidence            58999987  67899999875         2467899999999999999999988754 478999999999999999976


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--------  483 (615)
                      ..          .+++..+..++.|++.||.|||+.+   ++||||||+||+++.++.+||+|||++.....        
T Consensus        93 ~~----------~l~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~  159 (254)
T cd06627          93 FG----------PFPESLVAVYVYQVLQGLAYLHEQG---VIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASV  159 (254)
T ss_pred             cc----------CCCHHHHHHHHHHHHHHHHHHhhCC---cccCCCCHHHEEECCCCCEEEeccccceecCCCccccccc
Confidence            53          3899999999999999999999998   99999999999999999999999998864321        


Q ss_pred             ---------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          484 ---------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       484 ---------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                     ..+.++||||+|+++|||++|+.|+.....  ....+.               ......+.    
T Consensus       160 ~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~--~~~~~~---------------~~~~~~~~----  218 (254)
T cd06627         160 VGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNP--MAALFR---------------IVQDDHPP----  218 (254)
T ss_pred             ccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccH--HHHHHH---------------HhccCCCC----
Confidence                           134679999999999999999999864331  111110               00011111    


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                      .+......+.+++.+|+..+|++||++.|++.
T Consensus       219 ~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  250 (254)
T cd06627         219 LPEGISPELKDFLMQCFQKDPNLRPTAKQLLK  250 (254)
T ss_pred             CCCCCCHHHHHHHHHHHhCChhhCcCHHHHhc
Confidence            22233456789999999999999999999875

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.95  E-value=1.8e-27  Score=250.41  Aligned_cols=223  Identities=20%  Similarity=0.321  Sum_probs=163.5

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcC---CCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDS---QGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~---~~~~~lV~E~~~~GsL~~~  408 (615)
                      +.||+|..  +|+.||+|++..         .+.+|+.+|++++|+||+++.+++...   ....++|+||+. |+|.++
T Consensus        19 g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~   97 (334)
T cd07855          19 GVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVYVVMDLME-SDLHHI   97 (334)
T ss_pred             eEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEEEEEehhh-hhHHHH
Confidence            47999986  689999998753         356799999999999999999876532   235799999996 699999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      +....          .+++..+..++.|++.||.|||+++   ++||||||+||++++++.+||+|||+++...      
T Consensus        98 ~~~~~----------~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~  164 (334)
T cd07855          98 IHSDQ----------PLTEEHIRYFLYQLLRGLKYIHSAN---VIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEH  164 (334)
T ss_pred             hccCC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCcEEecccccceeecccCcCC
Confidence            87543          2899999999999999999999988   9999999999999999999999999875321      


Q ss_pred             ----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhH------HHHHH
Q 047629          483 ----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV------EEKRE  534 (615)
Q Consensus       483 ----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~------~~~~~  534 (615)
                                            ...+.++|||||||++|||++|+.||.........   ..+......      +....
T Consensus       165 ~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~  241 (334)
T cd07855         165 KYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQL---KLILSVLGSPSEEVLNRIGS  241 (334)
T ss_pred             CcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHH---HHHHHHhCCChhHhhhhhch
Confidence                                  11356899999999999999999999754322111   111111000      00001


Q ss_pred             HHHhhhcCC-cCCCCCC-----hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          535 ERLRNWMDP-NLESFYP-----IDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       535 ~~~~~~~dp-~l~~~~~-----~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      ..+.+.++. ......+     .+....+.++++.|++.+|.+||++.|++..-
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~  295 (334)
T cd07855         242 DRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQHP  295 (334)
T ss_pred             hhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhCh
Confidence            111111110 0001111     22345689999999999999999999999863

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.95  E-value=2.2e-27  Score=250.76  Aligned_cols=225  Identities=22%  Similarity=0.389  Sum_probs=161.1

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCC-----CcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQ-----GNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~-----~~~~lV~E~~~~GsL~  406 (615)
                      +.||+|..  +|+.||||+++.         .+.+|+.++++++|+||+++++++....     ...++|+||+.. +|.
T Consensus        29 g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~  107 (342)
T cd07879          29 GSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQDFYLVMPYMQT-DLQ  107 (342)
T ss_pred             eEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCceEEEEeccccc-CHH
Confidence            58999986  689999998752         3678999999999999999999875432     236899999974 787


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----  482 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----  482 (615)
                      +++..            .+++..+..++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++...    
T Consensus       108 ~~~~~------------~~~~~~~~~~~~qi~~aL~~LH~~~---i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~~~~  172 (342)
T cd07879         108 KIMGH------------PLSEDKVQYLVYQMLCGLKYIHSAG---IIHRDLKPGNLAVNEDCELKILDFGLARHADAEMT  172 (342)
T ss_pred             HHHcC------------CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEeeCCCCcCCCCCCC
Confidence            76531            2789999999999999999999998   9999999999999999999999999986421    


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHH-HHHHHH-----hh
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE-KREERL-----RN  539 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~-----~~  539 (615)
                                       ...+.++|||||||++|||++|+.||........   ...+........ .....+     ..
T Consensus       173 ~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (342)
T cd07879         173 GYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQ---LTQILKVTGVPGPEFVQKLEDKAAKS  249 (342)
T ss_pred             CceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHHhcCCCCHHHHHHhcccchHH
Confidence                             1235689999999999999999999975432111   111111100000 000000     00


Q ss_pred             hcC--C-----cCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH--HHhccc
Q 047629          540 WMD--P-----NLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN--LSVLTQ  587 (615)
Q Consensus       540 ~~d--p-----~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~--L~~l~~  587 (615)
                      ..+  +     .+...++ .....+.+++.+||+.||++||++.|++.+  ++.+.+
T Consensus       250 ~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~  305 (342)
T cd07879         250 YIKSLPKYPRKDFSTLFP-KASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRD  305 (342)
T ss_pred             HHhhcCCcccchHHHHhc-CCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhccc
Confidence            000  0     0000011 123457899999999999999999999975  555544

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.95  E-value=2.9e-27  Score=244.34  Aligned_cols=208  Identities=21%  Similarity=0.397  Sum_probs=157.1

Q ss_pred             ceEEEEEEC--CeEEEEEEccH--------HHHHHHHHHHhcC-CCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATID--GKVLAVKKIKE--------DVTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~~--g~~vAvK~~~~--------~~~~Ei~~l~~l~-H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||++...  |+.||||.++.        .+..|+.++.+.+ |+||+++++++.+. ...+++|||++ ++|.+++..
T Consensus        29 ~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~-~~~~~v~e~~~-~~l~~l~~~  106 (296)
T cd06618          29 GQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITD-SDVFICMELMS-TCLDKLLKR  106 (296)
T ss_pred             eEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecC-CeEEEEeeccC-cCHHHHHHH
Confidence            489999984  89999999862        2456777777775 99999999998754 47999999985 477777654


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHh-CCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE-HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ...         .+++..+..++.|++.||+|||+ .+   ++||||+|+||++++++.+||+|||++....        
T Consensus       107 ~~~---------~l~~~~~~~i~~~i~~~l~~lH~~~~---i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~~~~~~  174 (296)
T cd06618         107 IQG---------PIPEDILGKMTVAIVKALHYLKEKHG---VIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAKTRS  174 (296)
T ss_pred             hcC---------CCCHHHHHHHHHHHHHHHHHHHhhCC---EecCCCcHHHEEEcCCCCEEECccccchhccCCCcccCC
Confidence            332         38999999999999999999997 45   9999999999999999999999999875321        


Q ss_pred             ------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCc
Q 047629          483 ------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPN  544 (615)
Q Consensus       483 ------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~  544 (615)
                                        ...+.++||||||+++|||++|+.|+......     .+.....          +.. ..+.
T Consensus       175 ~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-----~~~~~~~----------~~~-~~~~  238 (296)
T cd06618         175 AGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTE-----FEVLTKI----------LQE-EPPS  238 (296)
T ss_pred             CCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhH-----HHHHHHH----------hcC-CCCC
Confidence                              11345799999999999999999998643211     0000000          000 0111


Q ss_pred             CCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          545 LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       545 l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      +.  ........+.+++.+||+.||++||++.+++++.
T Consensus       239 ~~--~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~~  274 (296)
T cd06618         239 LP--PNEGFSPDFCSFVDLCLTKDHRKRPKYRELLQHP  274 (296)
T ss_pred             CC--CCCCCCHHHHHHHHHHccCChhhCCCHHHHhcCh
Confidence            11  1112345689999999999999999999999864

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.95  E-value=4.1e-27  Score=247.66  Aligned_cols=218  Identities=27%  Similarity=0.316  Sum_probs=162.7

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------------------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEee
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------------------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEY  399 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------------------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~  399 (615)
                      +.||++..  +|+.||||.++.                     .+.+|++++++++|+||+++++++... ...++||||
T Consensus        23 g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~  101 (335)
T PTZ00024         23 GKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEG-DFINLVMDI  101 (335)
T ss_pred             eeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecC-CcEEEEEec
Confidence            48999986  689999998752                     256899999999999999999998754 478999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCC
Q 047629          400 AENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA  479 (615)
Q Consensus       400 ~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  479 (615)
                      ++ |+|.+++....          .+++.....++.|++.||+|||+.+   ++||||||+||+++.++.+|++|||+++
T Consensus       102 ~~-~~l~~~l~~~~----------~~~~~~~~~~~~ql~~aL~~LH~~~---i~H~dl~~~nill~~~~~~kl~dfg~~~  167 (335)
T PTZ00024        102 MA-SDLKKVVDRKI----------RLTESQVKCILLQILNGLNVLHKWY---FMHRDLSPANIFINSKGICKIADFGLAR  167 (335)
T ss_pred             cc-cCHHHHHHhcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---eecccccHHHeEECCCCCEEECCcccee
Confidence            97 69999986543          3889999999999999999999998   9999999999999999999999999875


Q ss_pred             CCC--------------------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHH
Q 047629          480 PAT--------------------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWK  521 (615)
Q Consensus       480 ~~~--------------------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~  521 (615)
                      ...                                      ...+.++||||||+++|||++|+.|+....+.+.   ..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~---~~  244 (335)
T PTZ00024        168 RYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQ---LG  244 (335)
T ss_pred             ecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH---HH
Confidence            432                                      1135678999999999999999999875543221   11


Q ss_pred             HHHHHHhHHHHHHHHHhhh------------cCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          522 EIREVLKVEEKREERLRNW------------MDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~~------------~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+........  .......            ..+.+.. ........+.+++..|++.+|++||++.|++..
T Consensus       245 ~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~~  313 (335)
T PTZ00024        245 RIFELLGTPN--EDNWPQAKKLPLYTEFTPRKPKDLKT-IFPNASDDAIDLLQSLLKLNPLERISAKEALKH  313 (335)
T ss_pred             HHHHHhCCCc--hhhCcchhhcccccccCcCCcccHHH-hCcCCChHHHHHHHHHcCCCchhccCHHHHhcC
Confidence            1111110000  0000000            0000000 011223467899999999999999999999975

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.95  E-value=4.8e-27  Score=239.26  Aligned_cols=206  Identities=19%  Similarity=0.273  Sum_probs=157.0

Q ss_pred             ceEEEEEE--CCeEEEEEEccHHHHH--HHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIKEDVTE--ELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSS  417 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~~~~--Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~  417 (615)
                      |.||++..  +|+.+|+|........  |+.....+ +|+|++++++++...+ ..++||||+++|+|.+++....    
T Consensus        30 g~v~~~~~~~~~~~~~~k~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~-~~~iv~e~~~~~~L~~~l~~~~----  104 (267)
T PHA03390         30 GKVSVLKHKPTQKLFVQKIIKAKNFNAIEPMVHQLMKDNPNFIKLYYSVTTLK-GHVLIMDYIKDGDLFDLLKKEG----  104 (267)
T ss_pred             eEEEEEEEcCCCcEEEEEEEehhhcchhhHHHHHHhhcCCCEEEEEEEEecCC-eeEEEEEcCCCCcHHHHHHhcC----
Confidence            58998886  6889999998754322  44433333 7999999999987644 7999999999999999997653    


Q ss_pred             CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC-cEEEeecCCCCCCC--------------
Q 047629          418 SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF-KAKIANFSLAAPAT--------------  482 (615)
Q Consensus       418 ~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-~~kl~DFGla~~~~--------------  482 (615)
                            .++|.++..++.|++.||.|||+.+   ++||||||+||+++.++ .++|+|||+++...              
T Consensus       105 ------~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~y~aP  175 (267)
T PHA03390        105 ------KLSEAEVKKIIRQLVEALNDLHKHN---IIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTPSCYDGTLDYFSP  175 (267)
T ss_pred             ------CCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEEeCCCCeEEEecCccceecCCCccCCCCCcccCh
Confidence                  2899999999999999999999998   99999999999999998 99999999875321              


Q ss_pred             -----CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHH
Q 047629          483 -----NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSL  557 (615)
Q Consensus       483 -----~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l  557 (615)
                           ...+.++||||||+++|||++|+.|+....+... . ...+              ........  ..+......+
T Consensus       176 E~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~-~-~~~~--------------~~~~~~~~--~~~~~~~~~~  237 (267)
T PHA03390        176 EKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEEL-D-LESL--------------LKRQQKKL--PFIKNVSKNA  237 (267)
T ss_pred             hhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchh-h-HHHH--------------HHhhcccC--CcccccCHHH
Confidence                 2245689999999999999999999974432211 0 0000              00011111  1122344567


Q ss_pred             HHHHHHhhhcCCCCCCC-HHHHHH
Q 047629          558 ATLARACTMDKSLSRPN-MAEVVF  580 (615)
Q Consensus       558 ~~l~~~C~~~dP~~RPs-m~ev~~  580 (615)
                      .+++..|++.+|.+||+ ++|+++
T Consensus       238 ~~li~~~l~~~p~~R~~~~~~~l~  261 (267)
T PHA03390        238 NDFVQSMLKYNINYRLTNYNEIIK  261 (267)
T ss_pred             HHHHHHHhccChhhCCchHHHHhc
Confidence            89999999999999996 688875

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.95  E-value=3.9e-27  Score=244.31  Aligned_cols=223  Identities=26%  Similarity=0.349  Sum_probs=160.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCC-------cEEEEEeecCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQG-------NRFLVYEYAENGS  404 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~-------~~~lV~E~~~~Gs  404 (615)
                      +.||++..  +|+.+|||++.         ..+.+|++++++++|+||+++++++.+...       ..++|+||++. +
T Consensus        22 ~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~-~  100 (311)
T cd07866          22 GEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRKRGSVYMVTPYMDH-D  100 (311)
T ss_pred             EEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheecccccccccCceEEEEEecCCc-C
Confidence            48999987  68899999874         246789999999999999999998754332       36999999975 7


Q ss_pred             HHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--
Q 047629          405 LDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--  482 (615)
Q Consensus       405 L~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--  482 (615)
                      |..++.....         .+++.++..++.|+++||+|||+++   ++||||||+||++++++.+||+|||+++...  
T Consensus       101 l~~~~~~~~~---------~~~~~~~~~i~~~l~~al~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  168 (311)
T cd07866         101 LSGLLENPSV---------KLTESQIKCYMLQLLEGINYLHENH---ILHRDIKAANILIDNQGILKIADFGLARPYDGP  168 (311)
T ss_pred             HHHHHhcccc---------CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEECcCccchhccCC
Confidence            8777765332         3899999999999999999999998   9999999999999999999999999885321  


Q ss_pred             ---------------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhH
Q 047629          483 ---------------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV  529 (615)
Q Consensus       483 ---------------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~  529 (615)
                                                       ...+.++||||||+++|||++|+.|+...........   +......
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~---~~~~~~~  245 (311)
T cd07866         169 PPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHL---IFKLCGT  245 (311)
T ss_pred             CcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHH---HHHHhCC
Confidence                                             1134679999999999999999999865442211111   1111000


Q ss_pred             ---HH-HHHHHHhhhcCCcCCCCCC-------hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          530 ---EE-KREERLRNWMDPNLESFYP-------IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       530 ---~~-~~~~~~~~~~dp~l~~~~~-------~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                         .. .....+....+.......+       ......+.+++.+|++.||.+|||+.|++..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~~  308 (311)
T cd07866         246 PTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALEH  308 (311)
T ss_pred             CChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhcC
Confidence               00 0000111111100000111       1122467899999999999999999998753

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.95  E-value=6.5e-27  Score=240.76  Aligned_cols=207  Identities=22%  Similarity=0.302  Sum_probs=158.9

Q ss_pred             ceEEEEEE-----CCeEEEEEEccH-----------HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCH
Q 047629          343 KSVYRATI-----DGKVLAVKKIKE-----------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSL  405 (615)
Q Consensus       343 ~~Vy~~~~-----~g~~vAvK~~~~-----------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL  405 (615)
                      +.||.+..     +|+.||+|+++.           .+.+|+.++.++ +|+||+++.+++.. ++..++|+||+++|+|
T Consensus        14 g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~-~~~~~lv~e~~~~~~L   92 (290)
T cd05613          14 GKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT-DTKLHLILDYINGGEL   92 (290)
T ss_pred             ceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeec-CCeEEEEEecCCCCcH
Confidence            47888775     678999998853           356799999999 69999999988764 4478999999999999


Q ss_pred             HHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--
Q 047629          406 DKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--  483 (615)
Q Consensus       406 ~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--  483 (615)
                      .+++....          .+++..+..++.|++.||.|||+.+   ++||||||+|||++.++.+||+|||+++....  
T Consensus        93 ~~~l~~~~----------~l~~~~~~~~~~qi~~al~~lH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~  159 (290)
T cd05613          93 FTHLSQRE----------RFKEQEVQIYSGEIVLALEHLHKLG---IIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDE  159 (290)
T ss_pred             HHHHHHcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeEECCCCCEEEeeCccceeccccc
Confidence            99997643          2889999999999999999999988   99999999999999999999999998854311  


Q ss_pred             ------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhh
Q 047629          484 ------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRN  539 (615)
Q Consensus       484 ------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  539 (615)
                                              ..+.++||||||+++|||++|+.|+.........  .....           .+..
T Consensus       160 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~--~~~~~-----------~~~~  226 (290)
T cd05613         160 VERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQ--AEISR-----------RILK  226 (290)
T ss_pred             ccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCccccH--HHHHH-----------Hhhc
Confidence                                    1345799999999999999999998643221111  00000           0000


Q ss_pred             hcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHHH
Q 047629          540 WMDPNLESFYPIDGALSLATLARACTMDKSLSRP-----NMAEVVFN  581 (615)
Q Consensus       540 ~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~~  581 (615)
                       ..+    .++......+.+++..||+.||++||     ++.+++..
T Consensus       227 -~~~----~~~~~~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~~  268 (290)
T cd05613         227 -SEP----PYPQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKKH  268 (290)
T ss_pred             -cCC----CCCccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHcC
Confidence             111    22333445678999999999999997     66666553

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.95  E-value=8.3e-27  Score=238.89  Aligned_cols=206  Identities=21%  Similarity=0.252  Sum_probs=157.7

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHH---HHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELR---ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~---~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      +.||++..  +|+.||+|.+...          +..|..   .++..+|+||+++.+++.+. ...++||||+++|+|.+
T Consensus         8 g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~v~e~~~g~~L~~   86 (278)
T cd05606           8 GEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTP-DKLSFILDLMNGGDLHY   86 (278)
T ss_pred             eEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecC-CEEEEEEecCCCCcHHH
Confidence            47998876  6889999987521          233433   34445799999999987754 47899999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++....          .++|..+..++.|++.||+|||+.+   ++||||||+||+++.++.+||+|||+++...     
T Consensus        87 ~l~~~~----------~l~~~~~~~~~~ql~~~l~~lH~~~---i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~~  153 (278)
T cd05606          87 HLSQHG----------VFSEAEMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPH  153 (278)
T ss_pred             HHHhcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---EEcCCCCHHHEEECCCCCEEEccCcCccccCccCCc
Confidence            986543          3899999999999999999999987   9999999999999999999999999875321     


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                       ..++.++|||||||++|||++|+.||...........    .           ......++.+
T Consensus       154 ~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~----~-----------~~~~~~~~~~  218 (278)
T cd05606         154 ASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEI----D-----------RMTLTMAVEL  218 (278)
T ss_pred             CcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHH----H-----------HHhhccCCCC
Confidence                             1245689999999999999999999975432111100    0           0011122222


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRP-----NMAEVVFN  581 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~~  581 (615)
                          +......+.+++.+|+..+|.+||     ++.|+++.
T Consensus       219 ----~~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~~  255 (278)
T cd05606         219 ----PDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKEH  255 (278)
T ss_pred             ----CCcCCHHHHHHHHHHhhcCHHhccCCCCCCHHHHHhC
Confidence                222345688999999999999999     99998764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.95  E-value=8.5e-27  Score=246.58  Aligned_cols=240  Identities=22%  Similarity=0.290  Sum_probs=170.7

Q ss_pred             eHHHHHHHccccccccccc----ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEc
Q 047629          324 EIEVIMESTMNLSEHYSIG----KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSD  388 (615)
Q Consensus       324 ~~~~l~~at~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~  388 (615)
                      ..+++...+++|.....+|    +.||++..  +|+.||+|+++.         .+.+|++++++++|+||+++.+++..
T Consensus         8 ~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~   87 (345)
T cd07877           8 LNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTP   87 (345)
T ss_pred             HHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeee
Confidence            3455666677777666665    47999986  689999998852         35679999999999999999998753


Q ss_pred             CC-----CcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCcee
Q 047629          389 SQ-----GNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ  463 (615)
Q Consensus       389 ~~-----~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NIL  463 (615)
                      ..     ...+++++++ +++|.+++...           .+++..+..++.|++.||+|||+.+   ++||||||+||+
T Consensus        88 ~~~~~~~~~~~lv~~~~-~~~L~~~~~~~-----------~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl  152 (345)
T cd07877          88 ARSLEEFNDVYLVTHLM-GADLNNIVKCQ-----------KLTDDHVQFLIYQILRGLKYIHSAD---IIHRDLKPSNLA  152 (345)
T ss_pred             cccccccccEEEEehhc-ccCHHHHHhcC-----------CCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCChHHEE
Confidence            21     2367888887 78999888643           2889999999999999999999998   999999999999


Q ss_pred             eCCCCcEEEeecCCCCCCC---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHH
Q 047629          464 LDSRFKAKIANFSLAAPAT---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKE  522 (615)
Q Consensus       464 ld~~~~~kl~DFGla~~~~---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~  522 (615)
                      +++++.+||+|||+++...                     ...+.++|||||||++|||++|+.|+.........   ..
T Consensus       153 l~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~---~~  229 (345)
T cd07877         153 VNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQL---KL  229 (345)
T ss_pred             EcCCCCEEEecccccccccccccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH---HH
Confidence            9999999999999986431                     12356899999999999999999998654321111   11


Q ss_pred             HHHHHhH---------HHHHHHHHhhhcCCcCCC---CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          523 IREVLKV---------EEKREERLRNWMDPNLES---FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       523 ~~~~~~~---------~~~~~~~~~~~~dp~l~~---~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +......         ...........++.....   +........+.+++.+|++.||.+||++.|++.+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h  300 (345)
T cd07877         230 ILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  300 (345)
T ss_pred             HHHHhCCCCHHHHhhcccHhHHHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhcC
Confidence            1100000         000000000001100000   0001123457899999999999999999999886

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.95  E-value=3.4e-27  Score=241.27  Aligned_cols=220  Identities=23%  Similarity=0.347  Sum_probs=163.1

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||++..  +|+.+++|+++.         .+..|++++++++|+||+++++++... ...++|+||+++ +|.+++..
T Consensus        13 ~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-~~~~~v~e~~~~-~l~~~l~~   90 (283)
T cd05118          13 GVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHK-GDLYLVFEFMDT-DLYKLIKD   90 (283)
T ss_pred             ceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccC-CCEEEEEeccCC-CHHHHHHh
Confidence            47999987  689999998752         366799999999999999999988754 479999999975 89888876


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--------  483 (615)
                      ...         .+++.++..++.|++.||.|||+++   ++|+||||+||+++.++.+||+|||.+.....        
T Consensus        91 ~~~---------~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~~~~~~  158 (283)
T cd05118          91 RQR---------GLPESLIKSYLYQLLQGLAFCHSHG---ILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHY  158 (283)
T ss_pred             hcc---------cCCHHHHHHHHHHHHHHHHHHHHCC---eeecCcCHHHEEECCCCcEEEeeeeeeEecCCCcccccCc
Confidence            432         3899999999999999999999998   99999999999999999999999998743211        


Q ss_pred             ----------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC-----
Q 047629          484 ----------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD-----  542 (615)
Q Consensus       484 ----------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d-----  542 (615)
                                      ..+.++||||||+++|||++|+.||......+.   .......+...  .......+.+     
T Consensus       159 ~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~  233 (283)
T cd05118         159 VVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQ---LFKIFRTLGTP--DPEVWPKFTSLARNY  233 (283)
T ss_pred             cCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHHHcCCC--chHhcccchhhhhhh
Confidence                            245689999999999999999999865442111   11111110000  0000000000     


Q ss_pred             -CcCC-------CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          543 -PNLE-------SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       543 -p~l~-------~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       ....       .....+....+.+++..||+.||.+||++.|++..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~~  280 (283)
T cd05118         234 KFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALAH  280 (283)
T ss_pred             hhhhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhhC
Confidence             0000       01112345678999999999999999999999863

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.95  E-value=3.6e-27  Score=240.93  Aligned_cols=221  Identities=24%  Similarity=0.366  Sum_probs=163.2

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||+|..  +++.+|+|.++.         .+..|++++++++|+|++++.+++.+. +..++|+||++ ++|.+++..
T Consensus        13 ~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~~v~e~~~-~~l~~~i~~   90 (282)
T cd07829          13 GVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTE-RKLYLVFEYCD-MDLKKYLDK   90 (282)
T ss_pred             ceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcC-CceEEEecCcC-cCHHHHHHh
Confidence            58999998  589999998763         356799999999999999999998754 47999999998 599999986


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--------  483 (615)
                      ...         .+++..+..++.+++.||.|||+++   ++||||+|+||++++++.+||+|||+++....        
T Consensus        91 ~~~---------~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~  158 (282)
T cd07829          91 RPG---------PLSPNLIKSIMYQLLRGLAYCHSHR---ILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTYTHE  158 (282)
T ss_pred             hcc---------CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChheEEEcCCCCEEEecCCcccccCCCccccCcc
Confidence            532         3899999999999999999999998   99999999999999999999999998754211        


Q ss_pred             ----------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHH-HHHHhhh--cCCc
Q 047629          484 ----------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKR-EERLRNW--MDPN  544 (615)
Q Consensus       484 ----------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~--~dp~  544 (615)
                                      ..+.++||||||+++|||++|+.|+......+.   ...+...+...... -..+...  .+..
T Consensus       159 ~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (282)
T cd07829         159 VVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQ---LFKIFQILGTPTEESWPGVTKLPDYKPT  235 (282)
T ss_pred             ccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHHH---HHHHHHHhCCCcHHHHHhhccccccccc
Confidence                            235579999999999999999988865432111   11111111000000 0000000  0000


Q ss_pred             CC--------CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          545 LE--------SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       545 l~--------~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..        ...+ .....+.+++.+||+.||++||++.|++..
T Consensus       236 ~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~  279 (282)
T cd07829         236 FPKFPPKDLEKVLP-RLDPEGIDLLSKMLQYNPAKRISAKEALKH  279 (282)
T ss_pred             ccccCccchHHhcc-cccHHHHHHHHHhhccCcccCCCHHHHhhC
Confidence            00        0011 124468999999999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.95  E-value=9.3e-27  Score=236.17  Aligned_cols=207  Identities=24%  Similarity=0.310  Sum_probs=165.0

Q ss_pred             ceEEEEEECC--eEEEEEEccHH----------HHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATIDG--KVLAVKKIKED----------VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~~g--~~vAvK~~~~~----------~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |+||.+.+.|  ..+|+|+|.++          ...|.+||+.++||.+.+|++.+.. +...+||||||++|+|...++
T Consensus        91 G~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet-~~~~cl~meyCpGGdL~~Lrq  169 (459)
T KOG0610|consen   91 GTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFET-DKYSCLVMEYCPGGDLHSLRQ  169 (459)
T ss_pred             eeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeec-cceeEEEEecCCCccHHHHHh
Confidence            6999999955  88999999753          4569999999999999999998764 458999999999999999887


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      .+...        .++.....-++..|.-||+|||-.|   ||.|||||+|||+-++|.+.|+||.|+....        
T Consensus       170 kQp~~--------~fse~~aRFYaAEvl~ALEYLHmlG---ivYRDLKPENILvredGHIMLsDFDLS~~~~~~Pt~~~s  238 (459)
T KOG0610|consen  170 KQPGK--------RFSESAARFYAAEVLLALEYLHMLG---IVYRDLKPENILVREDGHIMLSDFDLSLRCPVSPTLVKS  238 (459)
T ss_pred             hCCCC--------ccchhhHHHHHHHHHHHHHHHHhhc---eeeccCCcceeEEecCCcEEeeeccccccCCCCCeeecc
Confidence            76543        4899999999999999999999999   9999999999999999999999998862110        


Q ss_pred             ----------------------------C-------------------------------------------CCCCcccc
Q 047629          483 ----------------------------N-------------------------------------------DVMPKFDV  491 (615)
Q Consensus       483 ----------------------------~-------------------------------------------~~~~k~DV  491 (615)
                                                  .                                           ..+.++|.
T Consensus       239 ~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgsAVDW  318 (459)
T KOG0610|consen  239 SSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGSAVDW  318 (459)
T ss_pred             CCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCCCCchhhH
Confidence                                        0                                           01136799


Q ss_pred             hhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCC
Q 047629          492 FAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLS  571 (615)
Q Consensus       492 ~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~  571 (615)
                      |+|||+||||+.|+.||.+..+.+.                    +..++-..+.=.-..+......+|++..+..||.+
T Consensus       319 WtfGIflYEmLyG~TPFKG~~~~~T--------------------l~NIv~~~l~Fp~~~~vs~~akDLIr~LLvKdP~k  378 (459)
T KOG0610|consen  319 WTFGIFLYEMLYGTTPFKGSNNKET--------------------LRNIVGQPLKFPEEPEVSSAAKDLIRKLLVKDPSK  378 (459)
T ss_pred             HHHHHHHHHHHhCCCCcCCCCchhh--------------------HHHHhcCCCcCCCCCcchhHHHHHHHHHhccChhh
Confidence            9999999999999999987665332                    22222222211111134456899999999999999


Q ss_pred             CCC----HHHHHHH
Q 047629          572 RPN----MAEVVFN  581 (615)
Q Consensus       572 RPs----m~ev~~~  581 (615)
                      |-.    +.||-++
T Consensus       379 Rlg~~rGA~eIK~H  392 (459)
T KOG0610|consen  379 RLGSKRGAAEIKRH  392 (459)
T ss_pred             hhccccchHHhhcC
Confidence            998    7777664

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.95  E-value=1.2e-26  Score=238.66  Aligned_cols=211  Identities=21%  Similarity=0.259  Sum_probs=161.8

Q ss_pred             ceEEEEEE-----CCeEEEEEEccH-----------HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCH
Q 047629          343 KSVYRATI-----DGKVLAVKKIKE-----------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSL  405 (615)
Q Consensus       343 ~~Vy~~~~-----~g~~vAvK~~~~-----------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL  405 (615)
                      +.||++..     +++.+|||.+++           .+.+|++++.++ +|+||+++++.+.. +...++||||+++|+|
T Consensus        14 ~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~-~~~~~lv~e~~~~~~L   92 (288)
T cd05583          14 GKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQT-DTKLHLILDYVNGGEL   92 (288)
T ss_pred             ceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeec-CCEEEEEEecCCCCcH
Confidence            47998874     468899998852           256799999999 69999999988764 4478999999999999


Q ss_pred             HHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--
Q 047629          406 DKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--  483 (615)
Q Consensus       406 ~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--  483 (615)
                      .+++....          .+++..+..++.|++.||.|||+.+   ++||||||+||+++.++.++++|||+++....  
T Consensus        93 ~~~~~~~~----------~~~~~~~~~~~~ql~~~l~~lH~~~---~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~  159 (288)
T cd05583          93 FTHLYQRE----------HFTESEVRVYIAEIVLALDHLHQLG---IIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEE  159 (288)
T ss_pred             HHHHhhcC----------CcCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHeEECCCCCEEEEECcccccccccc
Confidence            99987543          2889999999999999999999987   99999999999999999999999998754210  


Q ss_pred             ------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhh
Q 047629          484 ------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRN  539 (615)
Q Consensus       484 ------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  539 (615)
                                              ..+.++||||||+++|||++|+.|+.........   ..+.         . .+..
T Consensus       160 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~---~~~~---------~-~~~~  226 (288)
T cd05583         160 EERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQ---SEIS---------R-RILK  226 (288)
T ss_pred             ccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcccchH---HHHH---------H-HHHc
Confidence                                    1345899999999999999999998643211110   0000         0 0100


Q ss_pred             hcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          540 WMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       540 ~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                       .++..    +......+.+++.+||+.||++|||++++.+.|...
T Consensus       227 -~~~~~----~~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~~  267 (288)
T cd05583         227 -SKPPF----PKTMSAEARDFIQKLLEKDPKKRLGANGADEIKNHP  267 (288)
T ss_pred             -cCCCC----CcccCHHHHHHHHHHhcCCHhhccCcchHHHHhcCc
Confidence             11112    222334578999999999999999999888877653

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.95  E-value=3.5e-27  Score=235.89  Aligned_cols=194  Identities=21%  Similarity=0.220  Sum_probs=153.1

Q ss_pred             ceEEEEEE--CCeEEEEEEccH--HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE--DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSS  418 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~--~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~  418 (615)
                      +.||++..  +|+.+|+|+++.  .+..|...+....||||+++++++.+. ...+++|||+++|+|.+++....     
T Consensus         7 ~~v~~~~~~~~~~~~~~K~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~-----   80 (237)
T cd05576           7 DKVLLVMDTRTQQTFILKGLRKSSEYSRERLTIIPHCVPNMVCLHKYIVSE-DSVFLVLQHAEGGKLWSHISKFL-----   80 (237)
T ss_pred             ceEEEEEEccCCcEEEEEeecchhhhhhHHHHHHhcCCCceeehhhheecC-CeEEEEEecCCCCCHHHHHHHhc-----
Confidence            47898887  789999999975  355666666667899999999988754 47899999999999999986543     


Q ss_pred             CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------------
Q 047629          419 SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------------  482 (615)
Q Consensus       419 ~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------------  482 (615)
                           .+++..+..++.|++.||+|||+.+   ++||||||+||+++.++.++++|||++....                
T Consensus        81 -----~l~~~~~~~~~~ql~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~y~aPE  152 (237)
T cd05576          81 -----NIPEECVKRWAAEMVVALDALHREG---IVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDGEAVENMYCAPE  152 (237)
T ss_pred             -----CCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHEEEcCCCCEEEecccchhccccccccCCcCccccCCc
Confidence                 2899999999999999999999988   9999999999999999999999999763221                


Q ss_pred             ----CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHH
Q 047629          483 ----NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLA  558 (615)
Q Consensus       483 ----~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~  558 (615)
                          ...+.++||||+|+++|||++|+.|+......                      .......    ..+......+.
T Consensus       153 ~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~----------------------~~~~~~~----~~~~~~~~~~~  206 (237)
T cd05576         153 VGGISEETEACDWWSLGAILFELLTGKTLVECHPSG----------------------INTHTTL----NIPEWVSEEAR  206 (237)
T ss_pred             ccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchh----------------------ccccccc----CCcccCCHHHH
Confidence                22456899999999999999999876432110                      0000000    11222334578


Q ss_pred             HHHHHhhhcCCCCCCCHH
Q 047629          559 TLARACTMDKSLSRPNMA  576 (615)
Q Consensus       559 ~l~~~C~~~dP~~RPsm~  576 (615)
                      +++.+|++.||++||++.
T Consensus       207 ~li~~~l~~dp~~R~~~~  224 (237)
T cd05576         207 SLLQQLLQFNPTERLGAG  224 (237)
T ss_pred             HHHHHHccCCHHHhcCCC
Confidence            999999999999999973

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.95  E-value=5.5e-27  Score=239.12  Aligned_cols=202  Identities=26%  Similarity=0.363  Sum_probs=162.3

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcC-CCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~-H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      +.||++..  +|+.+|+|.+..          .+.+|.+++.+++ |+||+++++++.+. ...++||||+++|+|.+++
T Consensus        15 ~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l   93 (280)
T cd05581          15 STVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDE-ENLYFVLEYAPNGELLQYI   93 (280)
T ss_pred             eEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCC-ceEEEEEcCCCCCcHHHHH
Confidence            48999987  789999998853          3567899999998 99999999987654 4789999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------  483 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------  483 (615)
                      ....          .+++..+..++.|++.||.|||+++   ++|+||||+||+++.++.++++|||++.....      
T Consensus        94 ~~~~----------~l~~~~~~~i~~ql~~~l~~Lh~~~---~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~  160 (280)
T cd05581          94 RKYG----------SLDEKCTRFYAAEILLALEYLHSKG---IIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPES  160 (280)
T ss_pred             HHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHeEECCCCCEEecCCccccccCCcccccc
Confidence            7653          3899999999999999999999998   99999999999999999999999998754211      


Q ss_pred             -------------------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHH
Q 047629          484 -------------------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREV  526 (615)
Q Consensus       484 -------------------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~  526 (615)
                                                           ..+.++||||||++++|+++|+.|+......      ..+.. 
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~------~~~~~-  233 (280)
T cd05581         161 NKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEY------LTFQK-  233 (280)
T ss_pred             CCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccHH------HHHHH-
Confidence                                                 1245799999999999999999998754310      00100 


Q ss_pred             HhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCH----HHHHH
Q 047629          527 LKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNM----AEVVF  580 (615)
Q Consensus       527 ~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm----~ev~~  580 (615)
                                ..   +  ....++......+.+++.+||+.+|.+||++    +|++.
T Consensus       234 ----------~~---~--~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~  276 (280)
T cd05581         234 ----------IL---K--LEYSFPPNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKA  276 (280)
T ss_pred             ----------HH---h--cCCCCCCccCHHHHHHHHHHhcCCHhhCCCcccCHHHHhc
Confidence                      00   0  1112233335568999999999999999999    77664

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.95  E-value=3.1e-26  Score=242.38  Aligned_cols=206  Identities=27%  Similarity=0.335  Sum_probs=168.0

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcC-CCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~-H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      +.||++..  +|+.+|+|.+.+          .+.+|+.+|+++. |||||.+.+.+.+.+ ..++|||++.+|.|.+.+
T Consensus        49 g~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~-~~~lvmEL~~GGeLfd~i  127 (382)
T KOG0032|consen   49 GVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPD-SVYLVMELCEGGELFDRI  127 (382)
T ss_pred             eEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCC-eEEEEEEecCCchHHHHH
Confidence            58999987  699999998852          5678999999998 999999999987654 899999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC----CcEEEeecCCCCCCCC--
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR----FKAKIANFSLAAPATN--  483 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~----~~~kl~DFGla~~~~~--  483 (615)
                      ... .          ++......++.|++.++.|||+.+   ++||||||+|+|+...    +.+|++|||++.....  
T Consensus       128 ~~~-~----------~sE~da~~~~~~il~av~~lH~~g---vvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~~~  193 (382)
T KOG0032|consen  128 VKK-H----------YSERDAAGIIRQILEAVKYLHSLG---VVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKPGE  193 (382)
T ss_pred             HHc-c----------CCHHHHHHHHHHHHHHHHHHHhCC---ceeccCCHHHeeeccccCCCCcEEEeeCCCceEccCCc
Confidence            765 1          789999999999999999999998   9999999999999654    4799999999965422  


Q ss_pred             --------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCC
Q 047629          484 --------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDP  543 (615)
Q Consensus       484 --------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp  543 (615)
                                          .++..+||||.||++|.|++|..||....+.+...      ...          .  .+.
T Consensus       194 ~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~------~i~----------~--~~~  255 (382)
T KOG0032|consen  194 RLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFL------AIL----------R--GDF  255 (382)
T ss_pred             eEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHH------HHH----------c--CCC
Confidence                                35678999999999999999999998655322111      110          0  111


Q ss_pred             cCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          544 NLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       544 ~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .....+-......+.++++.++..||.+|+++.+++++
T Consensus       256 ~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~H  293 (382)
T KOG0032|consen  256 DFTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQALQH  293 (382)
T ss_pred             CCCCCCccccCHHHHHHHHHhcccCcccCCCHHHHhcC
Confidence            22233333445678899999999999999999999985

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.94  E-value=1.7e-26  Score=231.57  Aligned_cols=199  Identities=26%  Similarity=0.339  Sum_probs=159.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||++..  +|+.+|+|.++.          .+..|++++++++|+||+++++.+.. +...+++|||+++++|.+++.
T Consensus         7 ~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~~v~e~~~~~~L~~~l~   85 (250)
T cd05123           7 GKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQT-EEKLYLVLEYAPGGELFSHLS   85 (250)
T ss_pred             eEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeec-CCeeEEEEecCCCCcHHHHHH
Confidence            47999987  589999998753          46789999999999999999998764 447899999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------  483 (615)
                      ...          .+++..+..++.|++.||.|||+.+   ++|+||||+||+++.++.++|+|||++.....       
T Consensus        86 ~~~----------~l~~~~~~~~~~qi~~~l~~lh~~~---~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~  152 (250)
T cd05123          86 KEG----------RFSEERARFYAAEIVLALEYLHSLG---IIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNT  152 (250)
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCcceEEEcCCCcEEEeecCcceecccCCCcccC
Confidence            653          2899999999999999999999987   99999999999999999999999998854321       


Q ss_pred             ----------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          484 ----------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       484 ----------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                      ..+.++|+||||+++||+++|+.|+...+.   ....              ..+.. ...    
T Consensus       153 ~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~---~~~~--------------~~~~~-~~~----  210 (250)
T cd05123         153 FCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDR---KEIY--------------EKILK-DPL----  210 (250)
T ss_pred             CcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH---HHHH--------------HHHhc-CCC----
Confidence                            134579999999999999999999965432   1000              00111 111    


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAE  577 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~e  577 (615)
                      .++......+.++++.||..||++||++.+
T Consensus       211 ~~~~~~~~~l~~~i~~~l~~~p~~R~~~~~  240 (250)
T cd05123         211 RFPEFLSPEARDLISGLLQKDPTKRLGSGG  240 (250)
T ss_pred             CCCCCCCHHHHHHHHHHhcCCHhhCCCccc
Confidence            123333456789999999999999999944

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.94  E-value=2.8e-26  Score=242.40  Aligned_cols=223  Identities=22%  Similarity=0.351  Sum_probs=159.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCC-----CcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQ-----GNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~-----~~~~lV~E~~~~GsL~  406 (615)
                      +.||++..  +|+.||||++.         ..+.+|+++|++++|+||+++++++....     ...++||||+ +++|.
T Consensus        29 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~l~  107 (343)
T cd07880          29 GTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRFHDFYLVMPFM-GTDLG  107 (343)
T ss_pred             eEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCccccccceEEEEEecC-CCCHH
Confidence            47999986  68999999874         23668999999999999999999876432     1358999999 67999


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----  482 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----  482 (615)
                      +++...           .+++..+..++.|++.||+|||+++   |+||||||+||+++.++.+|++|||++....    
T Consensus       108 ~~~~~~-----------~l~~~~~~~i~~qi~~al~~LH~~g---i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~  173 (343)
T cd07880         108 KLMKHE-----------KLSEDRIQFLVYQMLKGLKYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLARQTDSEMT  173 (343)
T ss_pred             HHHhcC-----------CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEeecccccccccCcc
Confidence            888642           2889999999999999999999998   9999999999999999999999999986431    


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHH-HH-------HHHHHHhHHHHH--HH
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVL-WK-------EIREVLKVEEKR--EE  535 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l-~~-------~~~~~~~~~~~~--~~  535 (615)
                                       ...+.++||||||+++|||++|+.||........... ..       .+...+......  ..
T Consensus       174 ~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (343)
T cd07880         174 GYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVK  253 (343)
T ss_pred             ccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhcchhHHHHHH
Confidence                             1245679999999999999999999875432111000 00       000000000000  00


Q ss_pred             HHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          536 RLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       536 ~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+.......+ ..........+.+++.+|++.||.+|||+.+++..
T Consensus       254 ~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~~  298 (343)
T cd07880         254 KLPRFRKKDF-RSLLPNANPLAVNVLEKMLVLDAESRITAAEALAH  298 (343)
T ss_pred             hccccCcchH-HHhccCCChHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            0000000000 00111233457899999999999999999999964

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.94  E-value=1.5e-26  Score=242.76  Aligned_cols=222  Identities=23%  Similarity=0.340  Sum_probs=163.6

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCC----CcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQ----GNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~----~~~~lV~E~~~~GsL~~  407 (615)
                      +.||++..  +|+.+|||++..         .+.+|++++++++|+||+++.+++...+    ...+++|||++ ++|.+
T Consensus        14 ~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~   92 (330)
T cd07834          14 GVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYIVTELME-TDLHK   92 (330)
T ss_pred             eEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceEEEecchh-hhHHH
Confidence            48999997  579999998752         4678999999999999999999886543    25899999998 58999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN----  483 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~----  483 (615)
                      ++....          .+++..+..++.+++.||+|||+++   ++||||||+|||++.++.++|+|||++.....    
T Consensus        93 ~l~~~~----------~l~~~~~~~i~~~l~~~l~~LH~~g---i~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~~~  159 (330)
T cd07834          93 VIKSPQ----------PLTDDHIQYFLYQILRGLKYLHSAN---VIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDE  159 (330)
T ss_pred             HHhCCC----------CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEcccCceEeecccccc
Confidence            987643          3899999999999999999999998   99999999999999999999999998754311    


Q ss_pred             -----------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHH---H---HH
Q 047629          484 -----------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE---K---RE  534 (615)
Q Consensus       484 -----------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~---~---~~  534 (615)
                                             ..+.++||||||+++|||++|+.||......+.   ...+........   .   ..
T Consensus       160 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~  236 (330)
T cd07834         160 KGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQ---LNLIVEVLGTPSEEDLKFITS  236 (330)
T ss_pred             cccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHH---HHHHHHhcCCCChhHhhhccc
Confidence                                   234579999999999999999999876542111   111111100000   0   00


Q ss_pred             HHHhhhcC---CcCC---CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          535 ERLRNWMD---PNLE---SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       535 ~~~~~~~d---p~l~---~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ....+.+.   +.-.   ..........+.+++.+||+.+|.+||++.+++..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~  289 (330)
T cd07834         237 EKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAH  289 (330)
T ss_pred             cchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence            00000000   0000   00111234567899999999999999999999985

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.94  E-value=1.2e-26  Score=234.67  Aligned_cols=207  Identities=23%  Similarity=0.315  Sum_probs=156.0

Q ss_pred             ceEEEEEE--CCeEEEEEEccH------------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGKVLAVKKIKE------------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~------------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      +.||++..  .+..+++|.++.            ++..|+.++++++||||+++++++.+. ...++|+||+++++|.++
T Consensus        14 g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~l~~~   92 (260)
T cd08222          14 GTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLER-DAFCIITEYCEGRDLDCK   92 (260)
T ss_pred             ceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcC-CceEEEEEeCCCCCHHHH
Confidence            48999887  334455554431            355789999999999999999988754 478999999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      +.......      ..+++.++..++.|++.||.|||+.+   ++|+||||+||++++ ..+|++|||+++...      
T Consensus        93 ~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~lH~~~---i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~~~~~~  162 (260)
T cd08222          93 LEELKHTG------KTLSENQVCEWFIQLLLGVHYMHQRR---ILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMGSCDLA  162 (260)
T ss_pred             HHHHhhcc------cccCHHHHHHHHHHHHHHHHHHHHcC---ccccCCChhheEeec-CCEeecccCceeecCCCcccc
Confidence            86532111      13899999999999999999999988   999999999999976 469999999875431      


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                       ...+.++||||||+++|||++|+.|+.....      .....           ....-..+. 
T Consensus       163 ~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~------~~~~~-----------~~~~~~~~~-  224 (260)
T cd08222         163 TTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNF------LSVVL-----------RIVEGPTPS-  224 (260)
T ss_pred             cCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCccH------HHHHH-----------HHHcCCCCC-
Confidence                             1134579999999999999999999854321      10000           111111222 


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                         .+......+.+++.+||+.+|++||++.|+++.
T Consensus       225 ---~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  257 (260)
T cd08222         225 ---LPETYSRQLNSIMQSMLNKDPSLRPSAAEILRN  257 (260)
T ss_pred             ---CcchhcHHHHHHHHHHhcCChhhCcCHHHHhhC
Confidence               233444568899999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.94  E-value=5.1e-27  Score=248.06  Aligned_cols=221  Identities=23%  Similarity=0.358  Sum_probs=160.2

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCCC-----cEEEEEeecCCCCHH
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQG-----NRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~-----~~~lV~E~~~~GsL~  406 (615)
                      +.||+|..  +++.||||++..         .+.+|+.++++++|+|++++.+++...+.     ..++|+||+ +++|.
T Consensus        29 g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~  107 (343)
T cd07851          29 GQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDFQDVYLVTHLM-GADLN  107 (343)
T ss_pred             eEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccccccEEEEEecC-CCCHH
Confidence            58999988  578999998752         35579999999999999999987654331     379999999 56999


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC---
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN---  483 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~---  483 (615)
                      +++...           .+++..+..++.|++.||+|||+.+   ++||||||+||++++++.+||+|||++.....   
T Consensus       108 ~~~~~~-----------~l~~~~~~~~~~ql~~aL~~LH~~g---i~H~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~  173 (343)
T cd07851         108 NIVKCQ-----------KLSDDHIQFLVYQILRGLKYIHSAG---IIHRDLKPSNIAVNEDCELKILDFGLARHTDDEMT  173 (343)
T ss_pred             HHHhcC-----------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCCEEEcccccccccccccc
Confidence            998652           2899999999999999999999998   99999999999999999999999999864321   


Q ss_pred             ------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhH--HH----HHHHHHhh
Q 047629          484 ------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV--EE----KREERLRN  539 (615)
Q Consensus       484 ------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~--~~----~~~~~~~~  539 (615)
                                        ..+.++|||||||++|||++|+.||......+..   ..+......  +.    ........
T Consensus       174 ~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~  250 (343)
T cd07851         174 GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQL---KRIMNLVGTPDEELLQKISSESARN  250 (343)
T ss_pred             CCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHH---HHHHHhcCCCCHHHHhhccchhHHH
Confidence                              2346899999999999999999998754321111   111110000  00    00000000


Q ss_pred             hcC---CcCCCCC---ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          540 WMD---PNLESFY---PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       540 ~~d---p~l~~~~---~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ++.   ..-...+   .......+.+++.+|++.||++|||+.||+..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~h  298 (343)
T cd07851         251 YIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALAH  298 (343)
T ss_pred             HHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhcC
Confidence            110   0000000   01124568899999999999999999999875

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.94  E-value=5.4e-28  Score=272.61  Aligned_cols=216  Identities=30%  Similarity=0.423  Sum_probs=168.5

Q ss_pred             ccccccccccc----ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEE
Q 047629          332 TMNLSEHYSIG----KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV  396 (615)
Q Consensus       332 t~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV  396 (615)
                      +......+.+|    |.||-++.  +|+..|+|.++         +.+.+|+.++..++|||+|+++|+-.+.+ ..+|.
T Consensus      1234 ~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRe-kv~IF 1312 (1509)
T KOG4645|consen 1234 TFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHRE-KVYIF 1312 (1509)
T ss_pred             eeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHH-HHHHH
Confidence            33344445555    47888876  78999999875         24678999999999999999999866543 78999


Q ss_pred             EeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecC
Q 047629          397 YEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFS  476 (615)
Q Consensus       397 ~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  476 (615)
                      ||||++|+|.+.+...+.          +++.....+..|++.|+.|||+++   ||||||||.||+||.++.+|++|||
T Consensus      1313 MEyC~~GsLa~ll~~gri----------~dE~vt~vyt~qll~gla~LH~~g---IVHRDIK~aNI~Ld~~g~iK~~DFG 1379 (1509)
T KOG4645|consen 1313 MEYCEGGSLASLLEHGRI----------EDEMVTRVYTKQLLEGLAYLHEHG---IVHRDIKPANILLDFNGLIKYGDFG 1379 (1509)
T ss_pred             HHHhccCcHHHHHHhcch----------hhhhHHHHHHHHHHHHHHHHHhcC---ceecCCCccceeeecCCcEEeeccc
Confidence            999999999999976542          566667778899999999999999   9999999999999999999999999


Q ss_pred             CCCCCCCC------------------------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHH
Q 047629          477 LAAPATND------------------------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREV  526 (615)
Q Consensus       477 la~~~~~~------------------------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~  526 (615)
                      .|....+.                              ...+.||||+|||++||+|||+||...++     .|..+..+
T Consensus      1380 sa~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dn-----e~aIMy~V 1454 (1509)
T KOG4645|consen 1380 SAVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDN-----EWAIMYHV 1454 (1509)
T ss_pred             ceeEecCchhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccc-----hhHHHhHH
Confidence            98654322                              12367999999999999999999987654     23322221


Q ss_pred             HhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          527 LKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       527 ~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      -.           .--|    ..|.....+-.+++..|++.||++|-++.|+++.
T Consensus      1455 ~~-----------gh~P----q~P~~ls~~g~dFle~Cl~~dP~~Rw~~~qlle~ 1494 (1509)
T KOG4645|consen 1455 AA-----------GHKP----QIPERLSSEGRDFLEHCLEQDPKMRWTASQLLEH 1494 (1509)
T ss_pred             hc-----------cCCC----CCchhhhHhHHHHHHHHHhcCchhhhHHHHHHHh
Confidence            10           0112    2344455566899999999999999888887765

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.94  E-value=6.4e-26  Score=234.36  Aligned_cols=212  Identities=16%  Similarity=0.210  Sum_probs=147.4

Q ss_pred             ceEEEEEEC-----CeEEEEEEcc---HHH---------------HHHHHHHHhcCCCCcccEEEEEEcCCCc---EEEE
Q 047629          343 KSVYRATID-----GKVLAVKKIK---EDV---------------TEELRILQRINHANLVKLMGVSSDSQGN---RFLV  396 (615)
Q Consensus       343 ~~Vy~~~~~-----g~~vAvK~~~---~~~---------------~~Ei~~l~~l~H~niv~l~g~~~~~~~~---~~lV  396 (615)
                      |.||+|...     +..+|+|...   +.+               ..+...+..++|+|++++++++......   .+++
T Consensus        26 G~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~  105 (294)
T PHA02882         26 GCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGCGSFKRCRMYYRFIL  105 (294)
T ss_pred             ceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEeeeEecCCceEEEEE
Confidence            589999973     3466777532   111               1223344566899999999976543322   3677


Q ss_pred             EeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecC
Q 047629          397 YEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFS  476 (615)
Q Consensus       397 ~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  476 (615)
                      +|+... ++.+.+....          ..++..+..++.|++.||+|||+.+   |+||||||+|||++.++.+||+|||
T Consensus       106 ~~~~~~-~~~~~~~~~~----------~~~~~~~~~i~~qi~~~l~~lH~~~---iiHrDiKp~Nill~~~~~~~l~DFG  171 (294)
T PHA02882        106 LEKLVE-NTKEIFKRIK----------CKNKKLIKNIMKDMLTTLEYIHEHG---ISHGDIKPENIMVDGNNRGYIIDYG  171 (294)
T ss_pred             Eehhcc-CHHHHHHhhc----------cCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCcEEEEEcC
Confidence            777643 6666665432          2568888999999999999999997   9999999999999999999999999


Q ss_pred             CCCCCC------------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHH
Q 047629          477 LAAPAT------------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREV  526 (615)
Q Consensus       477 la~~~~------------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~  526 (615)
                      +++...                              ..++.++|||||||++|||++|+.||............  ..  
T Consensus       172 la~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~--~~--  247 (294)
T PHA02882        172 IASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHA--AK--  247 (294)
T ss_pred             CceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHH--hH--
Confidence            985321                              11356899999999999999999999765332221100  00  


Q ss_pred             HhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          527 LKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       527 ~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                             .+.+..+..+.+.   .......+.+++..|++.+|++||++.++.+.|
T Consensus       248 -------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~  293 (294)
T PHA02882        248 -------CDFIKRLHEGKIK---IKNANKFIYDFIECVTKLSYEEKPDYDALIKIF  293 (294)
T ss_pred             -------HHHHHHhhhhhhc---cCCCCHHHHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence                   0001111111110   112345689999999999999999999999876

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.94  E-value=4e-28  Score=235.88  Aligned_cols=207  Identities=26%  Similarity=0.403  Sum_probs=169.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-----HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-----EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-----~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      |+||++..  .|+.+|||++.     .++..|+.+|++.+.+++|+++|.++.. ..+|+|||||.-|++.+.++..++ 
T Consensus        47 GSV~KAIH~EsG~v~AIK~VPV~sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~-sDLWIVMEYCGAGSiSDI~R~R~K-  124 (502)
T KOG0574|consen   47 GSVHKAIHRESGHVLAIKKVPVDTDLQEIIKEISIMQQCKSKYVVKYYGSYFKH-SDLWIVMEYCGAGSISDIMRARRK-  124 (502)
T ss_pred             hHHHHHHHhccCcEEEEEecCccchHHHHHHHHHHHHHcCCchhhhhhhhhccC-CceEeehhhcCCCcHHHHHHHhcC-
Confidence            57888876  79999999986     4578899999999999999999987644 479999999999999999987765 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------------  483 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------------  483 (615)
                              +|++..+..++.+-++||+|||...   -+|||||+.||||+.++.+||+|||.|..+++            
T Consensus       125 --------~L~E~EIs~iL~~TLKGL~YLH~~~---KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAKRNTVIGTP  193 (502)
T KOG0574|consen  125 --------PLSEQEISAVLRDTLKGLQYLHDLK---KIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAKRNTVIGTP  193 (502)
T ss_pred             --------CccHHHHHHHHHHHHhHHHHHHHHH---HHHhhcccccEEEcccchhhhhhccccchhhhhHHhhCccccCc
Confidence                    4999999999999999999999987   79999999999999999999999999866532            


Q ss_pred             -----------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChH
Q 047629          484 -----------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPID  552 (615)
Q Consensus       484 -----------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~  552 (615)
                                 .+..++||||+|+.-.||..||+|+.....-         +..+          .---.|...-.-|.+
T Consensus       194 FWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPM---------RAIF----------MIPT~PPPTF~KPE~  254 (502)
T KOG0574|consen  194 FWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPM---------RAIF----------MIPTKPPPTFKKPEE  254 (502)
T ss_pred             ccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCccccccc---------ceeE----------eccCCCCCCCCChHh
Confidence                       2567899999999999999999998754321         0000          000011111123455


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          553 GALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       553 ~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      -...+-++++.|+-.+|++|-|+-+++++
T Consensus       255 WS~~F~DFi~~CLiK~PE~R~TA~~L~~H  283 (502)
T KOG0574|consen  255 WSSEFNDFIRSCLIKKPEERKTALRLCEH  283 (502)
T ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Confidence            56678999999999999999999888875

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.94  E-value=2.3e-26  Score=242.89  Aligned_cols=222  Identities=23%  Similarity=0.333  Sum_probs=157.1

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCC-------------CcEEEEEeec
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQ-------------GNRFLVYEYA  400 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~-------------~~~~lV~E~~  400 (615)
                      +.||+|..  +|+.||+|++.       +.+.+|++++++++|+||+++++++....             ...++|+||+
T Consensus        19 g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~   98 (342)
T cd07854          19 GLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGSLTELNSVYIVQEYM   98 (342)
T ss_pred             EEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccccccccceEEEEeecc
Confidence            48999987  68999999874       34778999999999999999998755332             2468999999


Q ss_pred             CCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC-CCcEEEeecCCCC
Q 047629          401 ENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS-RFKAKIANFSLAA  479 (615)
Q Consensus       401 ~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-~~~~kl~DFGla~  479 (615)
                      + ++|.+++...           .+++.....++.|++.||.|||+++   ++||||||+||+++. +..+|++|||+++
T Consensus        99 ~-~~L~~~~~~~-----------~l~~~~~~~~~~qi~~aL~~LH~~g---ivH~dikp~Nili~~~~~~~kl~dfg~~~  163 (342)
T cd07854          99 E-TDLANVLEQG-----------PLSEEHARLFMYQLLRGLKYIHSAN---VLHRDLKPANVFINTEDLVLKIGDFGLAR  163 (342)
T ss_pred             c-ccHHHHHHcC-----------CCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEcCCCceEEECCcccce
Confidence            7 5999888542           2889999999999999999999998   999999999999974 5678999999885


Q ss_pred             CCC---------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHH-
Q 047629          480 PAT---------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE-  531 (615)
Q Consensus       480 ~~~---------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~-  531 (615)
                      ...                           ...+.++|||||||++|||++|+.||......+...  ........... 
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~~~--~~~~~~~~~~~~  241 (342)
T cd07854         164 IVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQ--LILESVPVVREE  241 (342)
T ss_pred             ecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHH--HHHHhcCCCChH
Confidence            321                           113457999999999999999999996543211110  00000000000 


Q ss_pred             HHH---HHHhhhcC-CcCCCC-----CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          532 KRE---ERLRNWMD-PNLESF-----YPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       532 ~~~---~~~~~~~d-p~l~~~-----~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ...   ..+...+. ......     ........+.+++..|++.||++||++.|++..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~h  300 (342)
T cd07854         242 DRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALMH  300 (342)
T ss_pred             HhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhCC
Confidence            000   00000000 000000     011223457899999999999999999999874

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.94  E-value=9.5e-27  Score=246.88  Aligned_cols=212  Identities=26%  Similarity=0.380  Sum_probs=164.4

Q ss_pred             ccccccccc----eEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEee
Q 047629          335 LSEHYSIGK----SVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEY  399 (615)
Q Consensus       335 ~~~~~~iG~----~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~  399 (615)
                      +.-...||.    .|..+..  .|..||||.+.+         .+.+|+++|+.++|||||+|+.+... ...+|+||||
T Consensus        58 y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t-~~~lylV~ey  136 (596)
T KOG0586|consen   58 YVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIET-EATLYLVMEY  136 (596)
T ss_pred             eeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeee-cceeEEEEEe
Confidence            333444553    5666654  789999998864         35689999999999999999998764 4489999999


Q ss_pred             cCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCC
Q 047629          400 AENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA  479 (615)
Q Consensus       400 ~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  479 (615)
                      +.+|.+.+||..+..          +.......+..|+..+++|+|+++   |+|||||++|||||.++++||+|||++.
T Consensus       137 a~~ge~~~yl~~~gr----------~~e~~ar~~F~q~vsaveYcH~k~---ivHrdLk~eNilL~~~mnikIaDfgfS~  203 (596)
T KOG0586|consen  137 ASGGELFDYLVKHGR----------MKEKEARAKFRQIVSAVEYCHSKN---IVHRDLKAENILLDENMNIKIADFGFST  203 (596)
T ss_pred             ccCchhHHHHHhccc----------chhhhhhhhhHHHHHHHHHHhhcc---eeccccchhhcccccccceeeeccccce
Confidence            999999999988764          555778888999999999999998   9999999999999999999999999985


Q ss_pred             CCCC-----------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHH
Q 047629          480 PATN-----------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREER  536 (615)
Q Consensus       480 ~~~~-----------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  536 (615)
                      .+..                       ...+++|+||+||+||-|++|..||+...-.+.   .             +..
T Consensus       204 ~~~~~~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~L---r-------------~rv  267 (596)
T KOG0586|consen  204 FFDYGLMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLKEL---R-------------PRV  267 (596)
T ss_pred             eecccccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCcccccc---c-------------chh
Confidence            5421                       135789999999999999999999986431110   0             011


Q ss_pred             HhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          537 LRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       537 ~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      ++.    .++  .|.-.....-++++..+-.+|.+|++++++.+.-
T Consensus       268 l~g----k~r--Ip~~ms~dce~lLrk~lvl~Pskr~~~dqim~~~  307 (596)
T KOG0586|consen  268 LRG----KYR--IPFYMSCDCEDLLRKFLVLNPSKRGPCDQIMKDR  307 (596)
T ss_pred             eee----eec--ccceeechhHHHHHHhhccCccccCCHHHhhhhc
Confidence            111    111  1111222346889999999999999999998863

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.94  E-value=4.9e-26  Score=225.69  Aligned_cols=205  Identities=30%  Similarity=0.442  Sum_probs=163.3

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||+|..  +|+.+|+|++.        +.+.+|++.+++++|+|++++.+++... ...++++||+++++|.+++...
T Consensus         3 g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~-~~~~l~~e~~~~~~L~~~~~~~   81 (244)
T smart00220        3 GKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDE-DKLYLVMEYCDGGDLFDLLKKR   81 (244)
T ss_pred             eEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeC-CEEEEEEeCCCCCCHHHHHHhc
Confidence            47999998  47999999984        4678999999999999999999998754 4789999999999999999764


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC---------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN---------  483 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~---------  483 (615)
                      ..          +++.++..++.+++.++.|||+.+   ++|+||+|+||++++++.++++|||.+.....         
T Consensus        82 ~~----------~~~~~~~~~~~~l~~~l~~lh~~~---i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~  148 (244)
T smart00220       82 GR----------LSEDEARFYARQILSALEYLHSNG---IIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTFVG  148 (244)
T ss_pred             cC----------CCHHHHHHHHHHHHHHHHHHHHcC---eecCCcCHHHeEECCCCcEEEccccceeeeccccccccccC
Confidence            32          789999999999999999999997   99999999999999999999999999764322         


Q ss_pred             -------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC-CCC
Q 047629          484 -------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE-SFY  549 (615)
Q Consensus       484 -------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~-~~~  549 (615)
                                   ..+.++||||||++++||++|+.|+....+.+.  ...    .          +.   ..... ...
T Consensus       149 ~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~~~~--~~~----~----------~~---~~~~~~~~~  209 (244)
T smart00220      149 TPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQLLE--LFK----K----------IG---KPKPPFPPP  209 (244)
T ss_pred             CcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCcHHH--HHH----H----------Hh---ccCCCCccc
Confidence                         245689999999999999999999865322111  000    0          00   00000 000


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                      .......+.+++.+|+..+|++||++.++++
T Consensus       210 ~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~  240 (244)
T smart00220      210 EWKISPEAKDLIRKLLVKDPEKRLTAEEALQ  240 (244)
T ss_pred             cccCCHHHHHHHHHHccCCchhccCHHHHhh
Confidence            0003456889999999999999999999986

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.94  E-value=8.7e-26  Score=237.43  Aligned_cols=221  Identities=22%  Similarity=0.308  Sum_probs=158.0

Q ss_pred             ceEEEEEE--C--CeEEEEEEccH---------HHHHHHHHHHhc-CCCCcccEEEEEEcC---CCcEEEEEeecCCCCH
Q 047629          343 KSVYRATI--D--GKVLAVKKIKE---------DVTEELRILQRI-NHANLVKLMGVSSDS---QGNRFLVYEYAENGSL  405 (615)
Q Consensus       343 ~~Vy~~~~--~--g~~vAvK~~~~---------~~~~Ei~~l~~l-~H~niv~l~g~~~~~---~~~~~lV~E~~~~GsL  405 (615)
                      +.||++..  .  ++.||+|+++.         .+.+|+++++++ +|+||+++++.+...   ....++++||+. ++|
T Consensus        14 g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~e~~~-~~L   92 (332)
T cd07857          14 GIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNELYLYEELME-ADL   92 (332)
T ss_pred             eEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcEEEEEeccc-CCH
Confidence            48999997  3  67899998752         356799999999 599999999875422   124688889886 699


Q ss_pred             HHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---
Q 047629          406 DKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---  482 (615)
Q Consensus       406 ~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---  482 (615)
                      .+++....          .+++..+..++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++...   
T Consensus        93 ~~~l~~~~----------~~~~~~~~~~~~qi~~aL~~LH~~g---ivH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~~~  159 (332)
T cd07857          93 HQIIRSGQ----------PLTDAHFQSFIYQILCGLKYIHSAN---VLHRDLKPGNLLVNADCELKICDFGLARGFSENP  159 (332)
T ss_pred             HHHHhcCC----------CCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHeEEcCCCCEEeCcCCCceeccccc
Confidence            99986543          3899999999999999999999998   9999999999999999999999999885321   


Q ss_pred             -------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH-------
Q 047629          483 -------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE-------  530 (615)
Q Consensus       483 -------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~-------  530 (615)
                                               ...+.++|||||||++|||++|+.|+.......   ....+...+...       
T Consensus       160 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~~~  236 (332)
T cd07857         160 GENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVD---QLNQILQVLGTPDEETLSR  236 (332)
T ss_pred             ccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHH---HHHHHHHHhCCCCHHHHHh
Confidence                                     113457899999999999999999986543211   111111111000       


Q ss_pred             --HHHHHHHhhhcC--C--cCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          531 --EKREERLRNWMD--P--NLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       531 --~~~~~~~~~~~d--p--~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                        ...........+  +  .+.... ......+.+++.+|++.||++||++.|++..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~  292 (332)
T cd07857         237 IGSPKAQNYIRSLPNIPKKPFESIF-PNANPLALDLLEKLLAFDPTKRISVEEALEH  292 (332)
T ss_pred             hhhhhHHHHHHhccccCCcchHhhC-CCCCHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence              000000000000  0  000000 1123468899999999999999999999875

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.94  E-value=7e-26  Score=251.01  Aligned_cols=209  Identities=19%  Similarity=0.268  Sum_probs=140.3

Q ss_pred             HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHH
Q 047629          363 DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQ  442 (615)
Q Consensus       363 ~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~  442 (615)
                      .+.+|+.+|++++|+||+++++++... +..++|+|++. ++|.+++........     ......+...|+.|++.||.
T Consensus       209 ~~~~Ei~il~~l~HpnIv~l~~~~~~~-~~~~lv~e~~~-~~l~~~l~~~~~~~~-----~~~~~~~~~~i~~ql~~aL~  281 (501)
T PHA03210        209 QLENEILALGRLNHENILKIEEILRSE-ANTYMITQKYD-FDLYSFMYDEAFDWK-----DRPLLKQTRAIMKQLLCAVE  281 (501)
T ss_pred             HHHHHHHHHHhCCCCCcCcEeEEEEEC-CeeEEEEeccc-cCHHHHHhhcccccc-----ccccHHHHHHHHHHHHHHHH
Confidence            367899999999999999999998754 47899999985 588888765432100     01345667789999999999


Q ss_pred             HHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------------------------CCCCCcccchhHHHHH
Q 047629          443 YMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------------------------NDVMPKFDVFAFGVVL  498 (615)
Q Consensus       443 yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------------------------~~~~~k~DV~SfGvvl  498 (615)
                      |||+++   |+||||||+|||++.++.+||+|||+++...                        ..++.++|||||||++
T Consensus       282 yLH~~g---IiHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil  358 (501)
T PHA03210        282 YIHDKK---LIHRDIKLENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLIL  358 (501)
T ss_pred             HHHhCC---eecCCCCHHHEEECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHH
Confidence            999998   9999999999999999999999999986431                        1145679999999999


Q ss_pred             HHHHcCCCC-CCCCCCChhHHHHHHHHHHHhHHHH---HHHHHhhhcCCc-C---CCCCC-----hHHHHHHHHHHHHhh
Q 047629          499 LELLSGKKA-TRTTENGKTAVLWKEIREVLKVEEK---REERLRNWMDPN-L---ESFYP-----IDGALSLATLARACT  565 (615)
Q Consensus       499 ~ElltG~~p-~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~dp~-l---~~~~~-----~~~~~~l~~l~~~C~  565 (615)
                      |||++|+.+ +..........+.+.+.........   ....+.+.++.. +   ....+     ......+.+++.+|+
T Consensus       359 ~ell~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL  438 (501)
T PHA03210        359 LDMLSHDFCPIGDGGGKPGKQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKML  438 (501)
T ss_pred             HHHHHCCCCCccCCCCCHHHHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHh
Confidence            999998854 3322221111111111100000000   000111111100 0   00000     011234677899999


Q ss_pred             hcCCCCCCCHHHHHHH
Q 047629          566 MDKSLSRPNMAEVVFN  581 (615)
Q Consensus       566 ~~dP~~RPsm~ev~~~  581 (615)
                      +.||++|||+.|++.+
T Consensus       439 ~~DP~~Rpsa~elL~h  454 (501)
T PHA03210        439 TFDWHLRPGAAELLAL  454 (501)
T ss_pred             ccCcccCcCHHHHhhC
Confidence            9999999999999875

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.94  E-value=3.4e-27  Score=230.79  Aligned_cols=161  Identities=28%  Similarity=0.436  Sum_probs=136.8

Q ss_pred             ceEEEEEE----C--CeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI----D--GKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~----~--g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||+++-    +  .+.+|+|+++.         ...+|+.+++.++|+|++.|..++...+...++++||++. +|.+
T Consensus        38 G~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~v~l~fdYAEh-DL~~  116 (438)
T KOG0666|consen   38 GKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKKVWLLFDYAEH-DLWH  116 (438)
T ss_pred             ceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCceEEEEehhhhh-hHHH
Confidence            58999965    1  24789999974         3679999999999999999999888767789999999987 9999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC----CcEEEeecCCCCCCCC
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR----FKAKIANFSLAAPATN  483 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~----~~~kl~DFGla~~~~~  483 (615)
                      .++-++....     ..++-..+..|+.||+.|+.|||+++   |+||||||.|||+..+    |++||+|||+++...+
T Consensus       117 II~fHr~~~~-----~~lp~~mvKsilwQil~Gv~YLH~NW---vlHRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~  188 (438)
T KOG0666|consen  117 IIKFHRASKA-----KQLPRSMVKSILWQILDGVHYLHSNW---VLHRDLKPANILVMGDGPERGRVKIADLGLARLFNN  188 (438)
T ss_pred             HHHHhccchh-----ccCCHHHHHHHHHHHHhhhHHHhhhh---eeeccCCcceEEEeccCCccCeeEeecccHHHHhhc
Confidence            9876654322     13788899999999999999999999   9999999999999877    9999999999976532


Q ss_pred             ---------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCC
Q 047629          484 ---------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTE  512 (615)
Q Consensus       484 ---------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~  512 (615)
                                                 .+|++.||||.||++.||++-++-|...+
T Consensus       189 plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~E  244 (438)
T KOG0666|consen  189 PLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGRE  244 (438)
T ss_pred             cccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccchh
Confidence                                       36789999999999999999887776543

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.94  E-value=2.1e-26  Score=221.72  Aligned_cols=208  Identities=19%  Similarity=0.369  Sum_probs=156.5

Q ss_pred             ceEEEEEE--CCeEEEEEEccH--------HHHHHHHHHHhcC-CCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE--------DVTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~--------~~~~Ei~~l~~l~-H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.|++..+  .|...|||.|++        .+...++++.+-+ .|.||+.+||+..+ ...++.||.|.- .++..|+.
T Consensus       106 G~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n-~dV~IcMelMs~-C~ekLlkr  183 (391)
T KOG0983|consen  106 GQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITN-TDVFICMELMST-CAEKLLKR  183 (391)
T ss_pred             cceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeC-chHHHHHHHHHH-HHHHHHHH
Confidence            68999998  679999999963        3455666666554 79999999999854 468899999954 56666665


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--------  483 (615)
                      -..         ++++.-+=++...+.+||.||.++.  .|+|||+||+|||+|+.|++|++|||++..+.+        
T Consensus       184 ik~---------piPE~ilGk~tva~v~AL~YLKeKH--~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkAhtrsA  252 (391)
T KOG0983|consen  184 IKG---------PIPERILGKMTVAIVKALYYLKEKH--GVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKAHTRSA  252 (391)
T ss_pred             hcC---------CchHHhhhhhHHHHHHHHHHHHHhc--ceeecccCccceEEccCCCEEeecccccceeeccccccccc
Confidence            443         3777777788899999999998865  599999999999999999999999999844321        


Q ss_pred             -----------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          484 -----------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       484 -----------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                       .+.-++||||||+.|+||.||+.|+.....+     .+.+..+           .+-.-|.|.
T Consensus       253 GC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~td-----Fe~ltkv-----------ln~ePP~L~  316 (391)
T KOG0983|consen  253 GCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTD-----FEVLTKV-----------LNEEPPLLP  316 (391)
T ss_pred             CCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCcc-----HHHHHHH-----------HhcCCCCCC
Confidence                             1334789999999999999999999764321     1111111           111224443


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +..  .....+.++...|+..|+.+||...+++++
T Consensus       317 ~~~--gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~h  349 (391)
T KOG0983|consen  317 GHM--GFSPDFQSFVKDCLTKDHRKRPKYNKLLEH  349 (391)
T ss_pred             ccc--CcCHHHHHHHHHHhhcCcccCcchHHHhcC
Confidence            211  134468999999999999999999999885

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.94  E-value=2.4e-26  Score=246.82  Aligned_cols=162  Identities=30%  Similarity=0.445  Sum_probs=135.5

Q ss_pred             ceEEEEEE--CCeEEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEEEEcCC-----CcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQ-----GNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~~~~~~-----~~~~lV~E~~~~GsL~~  407 (615)
                      |.||+|..  .|+.||||.++.        ...+|+++|++++|+|||++++.-.+..     ....+|||||.+|||..
T Consensus        27 g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlvmEyC~gGsL~~  106 (732)
T KOG4250|consen   27 GNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLVMEYCSGGSLRK  106 (732)
T ss_pred             ceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEEEeecCCCcHHH
Confidence            48999996  799999998864        3678999999999999999999732211     13689999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC--CC--cEEEeecCCCCCCCC
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS--RF--KAKIANFSLAAPATN  483 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~--~~--~~kl~DFGla~~~~~  483 (615)
                      .|.+....       ..|+..+.+.+..+++.||.|||+++   |+||||||.||++-.  ++  --||+|||.||...+
T Consensus       107 ~L~~PEN~-------~GLpE~e~l~lL~d~~~al~~LrEn~---IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d  176 (732)
T KOG4250|consen  107 VLNSPENA-------YGLPESEFLDLLSDLVSALRHLRENG---IVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDD  176 (732)
T ss_pred             HhcCcccc-------cCCCHHHHHHHHHHHHHHHHHHHHcC---ceeccCCCCcEEEeecCCCceEEeeecccccccCCC
Confidence            99875432       35999999999999999999999998   999999999999842  23  469999999987533


Q ss_pred             -----------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCC
Q 047629          484 -----------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENG  514 (615)
Q Consensus       484 -----------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~  514 (615)
                                             .++..+|.|||||++||.+||..||......
T Consensus       177 ~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~p  230 (732)
T KOG4250|consen  177 NSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPFGGP  230 (732)
T ss_pred             CCeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcCCCc
Confidence                                   2456789999999999999999999875543

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.93  E-value=2.6e-26  Score=244.76  Aligned_cols=203  Identities=23%  Similarity=0.300  Sum_probs=160.5

Q ss_pred             eEEEEEE--CCeEEEEEEccHH---HHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCC
Q 047629          344 SVYRATI--DGKVLAVKKIKED---VTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSS  417 (615)
Q Consensus       344 ~Vy~~~~--~g~~vAvK~~~~~---~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~  417 (615)
                      .|-++..  +++..+||.+.+.   ..+|+.++.+. +|+||+++.+.+.+. .+.|+|||.+.+|-|.+.+.....   
T Consensus       337 ~~~~~~~~~t~~~~~vkii~~~~~~~~~e~~~~~~~~~h~niv~~~~v~~~~-~~~~~v~e~l~g~ell~ri~~~~~---  412 (612)
T KOG0603|consen  337 AVKYCESSPTDQEPAVKIISKRADDNQDEIPISLLVRDHPNIVKSHDVYEDG-KEIYLVMELLDGGELLRRIRSKPE---  412 (612)
T ss_pred             ceeeeeccccccchhheeccccccccccccchhhhhcCCCcceeecceecCC-ceeeeeehhccccHHHHHHHhcch---
Confidence            4555554  6788999999765   77899887776 799999999998754 479999999999988887765442   


Q ss_pred             CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceee-CCCCcEEEeecCCCCCCCC-------------
Q 047629          418 SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL-DSRFKAKIANFSLAAPATN-------------  483 (615)
Q Consensus       418 ~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl-d~~~~~kl~DFGla~~~~~-------------  483 (615)
                             .. ..+..|+.+++.++.|||+++   +|||||||+|||+ ++.+.++|+|||.++....             
T Consensus       413 -------~~-~e~~~w~~~lv~Av~~LH~~g---vvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~~~tp~~t~~y~A  481 (612)
T KOG0603|consen  413 -------FC-SEASQWAAELVSAVDYLHEQG---VVHRDLKPGNILLDGSAGHLRLTYFGFWSELERSCDTPALTLQYVA  481 (612)
T ss_pred             -------hH-HHHHHHHHHHHHHHHHHHhcC---eeecCCChhheeecCCCCcEEEEEechhhhCchhhcccchhhcccC
Confidence                   33 778889999999999999998   9999999999999 5889999999999865432             


Q ss_pred             -------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHH
Q 047629          484 -------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALS  556 (615)
Q Consensus       484 -------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~  556 (615)
                             .+++++|+||||++||||++|+.|+.....+..      +...             +-.+    .+.......
T Consensus       482 PEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~~e------i~~~-------------i~~~----~~s~~vS~~  538 (612)
T KOG0603|consen  482 PEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAGIE------IHTR-------------IQMP----KFSECVSDE  538 (612)
T ss_pred             hhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCchHH------HHHh-------------hcCC----ccccccCHH
Confidence                   257799999999999999999999987665411      1111             1111    112333345


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHHHHHh
Q 047629          557 LATLARACTMDKSLSRPNMAEVVFNLSV  584 (615)
Q Consensus       557 l~~l~~~C~~~dP~~RPsm~ev~~~L~~  584 (615)
                      ..+|+..|++.||.+||+|.|+...=..
T Consensus       539 AKdLl~~LL~~dP~~Rl~~~~i~~h~w~  566 (612)
T KOG0603|consen  539 AKDLLQQLLQVDPALRLGADEIGAHPWF  566 (612)
T ss_pred             HHHHHHHhccCChhhCcChhhhccCcch
Confidence            6899999999999999999999886433

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=1.5e-26  Score=243.11  Aligned_cols=207  Identities=24%  Similarity=0.403  Sum_probs=165.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||+++.  .+-..|-|.+.       +++.-||+||....||+||+|++.+.. ++.+|+..|||.+|-.+..+-...
T Consensus        46 GKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~-enkLwiliEFC~GGAVDaimlEL~  124 (1187)
T KOG0579|consen   46 GKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYF-ENKLWILIEFCGGGAVDAIMLELG  124 (1187)
T ss_pred             hhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhc-cCceEEEEeecCCchHhHHHHHhc
Confidence            57999887  34455777774       468889999999999999999997664 458999999999999999887655


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC------------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA------------  481 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~------------  481 (615)
                      .         .|+..++.-++.|++.+|.|||++.   |||||||+.|||+.-+|.++|+|||.+...            
T Consensus       125 r---------~LtE~QIqvvc~q~ldALn~LHs~~---iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~qkRDsFIG  192 (1187)
T KOG0579|consen  125 R---------VLTEDQIQVVCYQVLDALNWLHSQN---IIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQKRDSFIG  192 (1187)
T ss_pred             c---------ccchHHHHHHHHHHHHHHHHHhhcc---hhhhhccccceEEEecCcEeeecccccccchhHHhhhccccC
Confidence            4         4999999999999999999999998   999999999999999999999999987432            


Q ss_pred             ----------------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          482 ----------------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       482 ----------------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                      ..+|..++||||||++|.||..+.+|......         ++-.+        ++.+--.|.|
T Consensus       193 TPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnp---------MRVll--------KiaKSePPTL  255 (1187)
T KOG0579|consen  193 TPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNP---------MRVLL--------KIAKSEPPTL  255 (1187)
T ss_pred             CcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccch---------HHHHH--------HHhhcCCCcc
Confidence                            12255689999999999999999998754331         11111        1111122333


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                        ..|..-...+.++.+.|+..||..||++.+++++
T Consensus       256 --lqPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~H  289 (1187)
T KOG0579|consen  256 --LQPSHWSRSFSDFLKRCLVKNPRNRPPAAQLLKH  289 (1187)
T ss_pred             --cCcchhhhHHHHHHHHHHhcCCccCCCHHHHhhC
Confidence              2345566678999999999999999999999874

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.93  E-value=5.6e-27  Score=222.42  Aligned_cols=206  Identities=24%  Similarity=0.335  Sum_probs=155.6

Q ss_pred             eEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          344 SVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       344 ~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      .||++..  .|+.+|+|.+.         +++.+|+.|.+.++|||||+|..-.. .++..|+|+|+|++|+|..=+-..
T Consensus        26 vVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~-~~~~~ylvFe~m~G~dl~~eIV~R  104 (355)
T KOG0033|consen   26 VVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQ-EESFHYLVFDLVTGGELFEDIVAR  104 (355)
T ss_pred             HHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhc-ccceeEEEEecccchHHHHHHHHH
Confidence            4555554  67888887764         45778999999999999999999754 566899999999999997655433


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC---CcEEEeecCCCCCCC-------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR---FKAKIANFSLAAPAT-------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~---~~~kl~DFGla~~~~-------  482 (615)
                      .          .+++...-....||+++|.|.|.++   |||||+||+|+||...   --+|++|||+|....       
T Consensus       105 ~----------~ySEa~aSH~~rQiLeal~yCH~n~---IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~g~~~~G  171 (355)
T KOG0033|consen  105 E----------FYSEADASHCIQQILEALAYCHSNG---IVHRDLKPENLLLASKAKGAAVKLADFGLAIEVNDGEAWHG  171 (355)
T ss_pred             H----------HHHHHHHHHHHHHHHHHHHHHHhcC---ceeccCChhheeeeeccCCCceeecccceEEEeCCcccccc
Confidence            1          4788888899999999999999998   9999999999999654   358999999986543       


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     +.++..+|||+.||+||-|+.|+.||...+..   .+.+.+             .....|  +.+
T Consensus       172 ~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~---rlye~I-------------~~g~yd--~~~  233 (355)
T KOG0033|consen  172 FAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH---RLYEQI-------------KAGAYD--YPS  233 (355)
T ss_pred             ccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHH---HHHHHH-------------hccccC--CCC
Confidence                           23567899999999999999999999764321   111111             111111  111


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+-.....+..+|+++++..||.+|.|+.|.+++
T Consensus       234 ~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL~H  267 (355)
T KOG0033|consen  234 PEWDTVTPEAKSLIRRMLTVNPKKRITADEALKH  267 (355)
T ss_pred             cccCcCCHHHHHHHHHHhccChhhhccHHHHhCC
Confidence            1112233456899999999999999999988764

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.93  E-value=6.1e-26  Score=206.12  Aligned_cols=222  Identities=20%  Similarity=0.322  Sum_probs=161.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |+||+|..  .++.||+|+++         ....+|+-+|+.++|+|||+++++.. ++..+.||+|||.. +|..|...
T Consensus        16 gtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlh-sdkkltlvfe~cdq-dlkkyfds   93 (292)
T KOG0662|consen   16 GTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLH-SDKKLTLVFEFCDQ-DLKKYFDS   93 (292)
T ss_pred             eeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhc-cCceeEEeHHHhhH-HHHHHHHh
Confidence            58999886  67999999986         34789999999999999999999864 45579999999975 89998876


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC-------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND-------  484 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~-------  484 (615)
                      ..+         .++......++.|+.+||.+.|++.   +.|||+||.|.|++.++..|++|||+++...-.       
T Consensus        94 lng---------~~d~~~~rsfmlqllrgl~fchshn---vlhrdlkpqnllin~ngelkladfglarafgipvrcysae  161 (292)
T KOG0662|consen   94 LNG---------DLDPEIVRSFMLQLLRGLGFCHSHN---VLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSAE  161 (292)
T ss_pred             cCC---------cCCHHHHHHHHHHHHhhhhhhhhhh---hhhccCCcceEEeccCCcEEecccchhhhcCCceEeeece
Confidence            654         2888889999999999999999998   999999999999999999999999999765321       


Q ss_pred             -----------------CCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHH-HHHHHhhhcCCcC
Q 047629          485 -----------------VMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEK-REERLRNWMDPNL  545 (615)
Q Consensus       485 -----------------~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~dp~l  545 (615)
                                       +++..|+||-||++.|+.. |++-|...+-.+.   ...+...+..... .=..+.+.-|-..
T Consensus       162 vvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddq---lkrif~~lg~p~ed~wps~t~lpdyk~  238 (292)
T KOG0662|consen  162 VVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQ---LKRIFRLLGTPTEDQWPSMTKLPDYKP  238 (292)
T ss_pred             eeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHH---HHHHHHHhCCCccccCCccccCCCCcc
Confidence                             5678999999999999998 5555544332111   1122222211100 0011222223222


Q ss_pred             CCCCChH---------HHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          546 ESFYPID---------GALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       546 ~~~~~~~---------~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      -..||..         ....-.++....+.-+|..|.++++.++.
T Consensus       239 yp~ypattswsqivp~lns~grdllqkll~cnp~qrisaeaalqh  283 (292)
T KOG0662|consen  239 YPIYPATTSWSQIVPKLNSTGRDLLQKLLKCNPAQRISAEAALQH  283 (292)
T ss_pred             cCCccccchHHHHhhhhcchhHHHHHHHhccCcccccCHHHHhcC
Confidence            2223321         11234567777788899999998877653

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.93  E-value=1.2e-24  Score=248.88  Aligned_cols=123  Identities=28%  Similarity=0.444  Sum_probs=109.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||+|..  +++.||||+++          ..+..|+.++..++|+||+++++++... ...++||||+++|+|.+++.
T Consensus        18 g~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~-~~~~lVmEy~~g~~L~~li~   96 (669)
T cd05610          18 GKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSA-NNVYLVMEYLIGGDVKSLLH   96 (669)
T ss_pred             eEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEEC-CEEEEEEeCCCCCCHHHHHH
Confidence            48999998  48999999986          3467899999999999999999887654 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCC
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA  479 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  479 (615)
                      ...          .+++...+.|+.||+.||+|||.++   |+||||||+|||++.++.+||+|||+++
T Consensus        97 ~~~----------~l~~~~~~~i~~qil~aL~yLH~~g---IiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610          97 IYG----------YFDEEMAVKYISEVALALDYLHRHG---IIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence            543          2788999999999999999999987   9999999999999999999999999864

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=1.9e-25  Score=251.23  Aligned_cols=154  Identities=27%  Similarity=0.407  Sum_probs=109.6

Q ss_pred             EEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEe
Q 047629          394 FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIA  473 (615)
Q Consensus       394 ~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~  473 (615)
                      ||-||||+.-.|+++++.+...         -.-...+++..+|+.||.|+|+.+   ||||||||.||+||++..+||+
T Consensus       672 YIQMEyCE~~ll~~iI~~N~~~---------~~~d~~wrLFreIlEGLaYIH~~g---iIHRDLKP~NIFLd~~~~VKIG  739 (1351)
T KOG1035|consen  672 YIQMEYCEKTLLRDIIRRNHFN---------SQRDEAWRLFREILEGLAYIHDQG---IIHRDLKPRNIFLDSRNSVKIG  739 (1351)
T ss_pred             EEEHhhhhhhHHHHHHHhcccc---------hhhHHHHHHHHHHHHHHHHHHhCc---eeeccCCcceeEEcCCCCeeec
Confidence            5556666665555555443320         024456889999999999999998   9999999999999999999999


Q ss_pred             ecCCCCCCC--------------------------------------------CCCCCcccchhHHHHHHHHHcCCCCCC
Q 047629          474 NFSLAAPAT--------------------------------------------NDVMPKFDVFAFGVVLLELLSGKKATR  509 (615)
Q Consensus       474 DFGla~~~~--------------------------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~  509 (615)
                      |||+|....                                            ..++.|+|+||+|||++||+.   ||.
T Consensus       740 DFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~y---PF~  816 (1351)
T KOG1035|consen  740 DFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLY---PFG  816 (1351)
T ss_pred             ccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhc---cCC
Confidence            999996510                                            014569999999999999986   344


Q ss_pred             CCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC--CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          510 TTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF--YPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       510 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~--~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +..+  .                 ...+..+-++.+..+  +..+....=.+++.+++++||.+|||+.|++..
T Consensus       817 TsME--R-----------------a~iL~~LR~g~iP~~~~f~~~~~~~e~slI~~Ll~hdP~kRPtA~eLL~s  871 (1351)
T KOG1035|consen  817 TSME--R-----------------ASILTNLRKGSIPEPADFFDPEHPEEASLIRWLLSHDPSKRPTATELLNS  871 (1351)
T ss_pred             chHH--H-----------------HHHHHhcccCCCCCCcccccccchHHHHHHHHHhcCCCccCCCHHHHhhc
Confidence            3211  0                 112222223433322  333444455899999999999999999999874

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.92  E-value=1.7e-25  Score=218.09  Aligned_cols=211  Identities=18%  Similarity=0.280  Sum_probs=161.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--HHHHHHHHHHHhc-CCCCcccEEEEEEcC---CCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--EDVTEELRILQRI-NHANLVKLMGVSSDS---QGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--~~~~~Ei~~l~~l-~H~niv~l~g~~~~~---~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      |.|-.+..  +|+.+|+|.+.  ...++|++..-+. .|+|||.+++++.+.   ...+++|||.|++|.|.+.+..++.
T Consensus        76 GkV~~C~~k~T~ekfALKvL~Ds~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLiVmE~meGGeLfsriq~~g~  155 (400)
T KOG0604|consen   76 GKVVQCVHKRTQEKFALKVLLDSPKARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLIVMECMEGGELFSRIQDRGD  155 (400)
T ss_pred             CceEEEEeccchhhhHHHHHhcCHHHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEeeeecccchHHHHHHHHccc
Confidence            55665554  68899999996  4688999987766 699999999987532   2247899999999999999987654


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC---CCcEEEeecCCCCCCCCC-------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS---RFKAKIANFSLAAPATND-------  484 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~---~~~~kl~DFGla~~~~~~-------  484 (615)
                      .        .+++.+.-+|+.||+.|+.|||+..   |.||||||+|+|...   |-..||+|||+|+.....       
T Consensus       156 ~--------afTErea~eI~~qI~~Av~~lH~~n---IAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~~~L~TPc  224 (400)
T KOG0604|consen  156 Q--------AFTEREASEIMKQIGLAVRYLHSMN---IAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEPGDLMTPC  224 (400)
T ss_pred             c--------cchHHHHHHHHHHHHHHHHHHHhcc---hhhccCChhheeeecCCCCcceEecccccccccCCCccccCCc
Confidence            2        4999999999999999999999998   999999999999965   456899999999865421       


Q ss_pred             ---------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          485 ---------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       485 ---------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                     +....|+||+||++|-|++|.+||......-   +...++.          +++   ..  .-+|
T Consensus       225 ~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~a---ispgMk~----------rI~---~g--qy~F  286 (400)
T KOG0604|consen  225 FTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLA---ISPGMKR----------RIR---TG--QYEF  286 (400)
T ss_pred             ccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCcc---CChhHHh----------Hhh---cc--CccC
Confidence                           3456899999999999999999998654311   0000111          111   00  1123


Q ss_pred             Ch----HHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          550 PI----DGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       550 ~~----~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      |.    ...+...++++..++.+|.+|-|..|++..-
T Consensus       287 P~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~hp  323 (400)
T KOG0604|consen  287 PEPEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMDHP  323 (400)
T ss_pred             CChhHhHHHHHHHHHHHHHhcCCchhheeHHHhhcCc
Confidence            33    2344567899999999999999999998763

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.92  E-value=6.6e-25  Score=245.24  Aligned_cols=239  Identities=15%  Similarity=0.189  Sum_probs=147.7

Q ss_pred             ccccccccccc----ceEEEEEE--C----CeEEEEEEccHHHHHHHHHHHhcC---CCCcccEEEEE-----EcCCCcE
Q 047629          332 TMNLSEHYSIG----KSVYRATI--D----GKVLAVKKIKEDVTEELRILQRIN---HANLVKLMGVS-----SDSQGNR  393 (615)
Q Consensus       332 t~~~~~~~~iG----~~Vy~~~~--~----g~~vAvK~~~~~~~~Ei~~l~~l~---H~niv~l~g~~-----~~~~~~~  393 (615)
                      .++|.....+|    |.||+|..  +    +..||||+++.....|+.+..+++   +.++..+...+     ...+...
T Consensus       131 ~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~e~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (566)
T PLN03225        131 KDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAVEIWMNERVRRACPNSCADFVYGFLEPVSSKKEDEY  210 (566)
T ss_pred             cCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchhHHHHHHHHHhhchhhHHHHHHhhhcccccccCCce
Confidence            45566666666    58999998  4    789999998754444444444433   23333222211     1234468


Q ss_pred             EEEEeecCCCCHHHhhccCCCCCC----------CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCcee
Q 047629          394 FLVYEYAENGSLDKWLHPKSKSSS----------SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ  463 (615)
Q Consensus       394 ~lV~E~~~~GsL~~~L~~~~~~~~----------~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NIL  463 (615)
                      ++||||+++|+|.+++........          .........+..+..++.|++.||+|||+++   |+||||||+|||
T Consensus       211 ~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~g---IiHRDLKP~NIL  287 (566)
T PLN03225        211 WLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTG---IVHRDVKPQNII  287 (566)
T ss_pred             EEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCC---EEeCcCCHHHEE
Confidence            999999999999999975431100          0000001223456689999999999999997   999999999999


Q ss_pred             eCC-CCcEEEeecCCCCCCCC----------------------------------------------CCCCcccchhHHH
Q 047629          464 LDS-RFKAKIANFSLAAPATN----------------------------------------------DVMPKFDVFAFGV  496 (615)
Q Consensus       464 ld~-~~~~kl~DFGla~~~~~----------------------------------------------~~~~k~DV~SfGv  496 (615)
                      ++. ++.+||+|||+|+....                                              .+..++|||||||
T Consensus       288 l~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGv  367 (566)
T PLN03225        288 FSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGL  367 (566)
T ss_pred             EeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcccHHHHH
Confidence            986 58999999999964210                                              0123459999999


Q ss_pred             HHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC----CCCCC--hHHHHHHHHHHHHhhhcCCC
Q 047629          497 VLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL----ESFYP--IDGALSLATLARACTMDKSL  570 (615)
Q Consensus       497 vl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l----~~~~~--~~~~~~l~~l~~~C~~~dP~  570 (615)
                      +||||+++..+.+..    ...+...+...    ..........+++..    ...+.  ........+|+.+|++.||+
T Consensus       368 iL~el~~~~~~~~~~----~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~~dP~  439 (566)
T PLN03225        368 IFLQMAFPNLRSDSN----LIQFNRQLKRN----DYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMRFKGR  439 (566)
T ss_pred             HHHHHHhCcCCCchH----HHHHHHHHHhc----CCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHccCCcc
Confidence            999999977654321    11111111000    000011111111111    00000  01122345899999999999


Q ss_pred             CCCCHHHHHHH
Q 047629          571 SRPNMAEVVFN  581 (615)
Q Consensus       571 ~RPsm~ev~~~  581 (615)
                      +|||++|++++
T Consensus       440 kR~ta~e~L~H  450 (566)
T PLN03225        440 QRISAKAALAH  450 (566)
T ss_pred             cCCCHHHHhCC
Confidence            99999999986

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.92  E-value=3.7e-25  Score=217.14  Aligned_cols=235  Identities=23%  Similarity=0.302  Sum_probs=167.5

Q ss_pred             eHHHHHHHcccccccccccceEEEEE--ECCeEEEEEEccH-------HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcE
Q 047629          324 EIEVIMESTMNLSEHYSIGKSVYRAT--IDGKVLAVKKIKE-------DVTEELRILQRI-NHANLVKLMGVSSDSQGNR  393 (615)
Q Consensus       324 ~~~~l~~at~~~~~~~~iG~~Vy~~~--~~g~~vAvK~~~~-------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~  393 (615)
                      +++|+.+-|.+...++.-+ +|--++  .+|.++|||++.+       .+.+|++++.+. .|+||++|+.++.+. ..+
T Consensus        74 ~F~d~YkLt~e~LGeGAya-sVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd-~~F  151 (463)
T KOG0607|consen   74 KFEDMYKLTSELLGEGAYA-SVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDD-TRF  151 (463)
T ss_pred             hHHHHHHhHHHHhcCccce-eeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhccc-ceE
Confidence            3567766665533222221 333333  3899999999863       477899999998 599999999998754 489


Q ss_pred             EEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC---cE
Q 047629          394 FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF---KA  470 (615)
Q Consensus       394 ~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~---~~  470 (615)
                      |||||-|.+|+|..++.....          +++....++..+||.||.|||.++   |.||||||+|||.....   -+
T Consensus       152 YLVfEKm~GGplLshI~~~~~----------F~E~EAs~vvkdia~aLdFlH~kg---IAHRDlKPENiLC~~pn~vsPv  218 (463)
T KOG0607|consen  152 YLVFEKMRGGPLLSHIQKRKH----------FNEREASRVVKDIASALDFLHTKG---IAHRDLKPENILCESPNKVSPV  218 (463)
T ss_pred             EEEEecccCchHHHHHHHhhh----------ccHHHHHHHHHHHHHHHHHHhhcC---cccccCCccceeecCCCCcCce
Confidence            999999999999999987653          899999999999999999999998   99999999999996643   47


Q ss_pred             EEeecCCCCCCC--C---------------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCCh
Q 047629          471 KIANFSLAAPAT--N---------------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGK  515 (615)
Q Consensus       471 kl~DFGla~~~~--~---------------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~  515 (615)
                      ||+||.|..-..  +                                 .+..+.|.||+|||||-|++|..||.+..+.+
T Consensus       219 KiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~d  298 (463)
T KOG0607|consen  219 KICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGAD  298 (463)
T ss_pred             eeeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCc
Confidence            999998763210  0                                 13468999999999999999999998765422


Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChH----HHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          516 TAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPID----GALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       516 ~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~----~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                      --+...++.+.-+     ...+..+-+.  .-+||.+    ...+..+++...+..|+.+|-++.+++.
T Consensus       299 CGWdrGe~Cr~CQ-----~~LFesIQEG--kYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vln  360 (463)
T KOG0607|consen  299 CGWDRGEVCRVCQ-----NKLFESIQEG--KYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVLN  360 (463)
T ss_pred             CCccCCCccHHHH-----HHHHHHHhcc--CCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhccC
Confidence            1110001111100     0111111111  1234442    2345677888888899999999988887

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.92  E-value=3.7e-26  Score=219.37  Aligned_cols=210  Identities=24%  Similarity=0.377  Sum_probs=154.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc-
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH-  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~-  410 (615)
                      |.|+|=..  .|+..|||+++        +.+..|.+...+- +.||||+++|.++ .+|..|+.||.|.- ||+.+-+ 
T Consensus        78 G~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F-~EGdcWiCMELMd~-SlDklYk~  155 (361)
T KOG1006|consen   78 GTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALF-SEGDCWICMELMDI-SLDKLYKR  155 (361)
T ss_pred             hhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhh-cCCceeeeHHHHhh-hHHHHHHH
Confidence            46666555  68999999996        2466677765554 7899999999987 46789999999964 7665432 


Q ss_pred             --cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC-------
Q 047629          411 --PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA-------  481 (615)
Q Consensus       411 --~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~-------  481 (615)
                        ...+        ..+++.-+-.|..-..+||+||-+.-  .|||||+||+|||||..|.+||+|||++..+       
T Consensus       156 vy~vq~--------~~ipE~Ilg~ItvatV~AL~yLK~~l--kiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~SiAkT  225 (361)
T KOG1006|consen  156 VYSVQK--------SRIPENILGHITVATVDALDYLKEEL--KIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDSIAKT  225 (361)
T ss_pred             HHHHHh--------ccCcHhhhhheeeeehhHHHHHHHHh--hhhhccCChhheEEecCCCEeeecccchHhHHHHHHhh
Confidence              2221        13777777788888899999998764  5999999999999999999999999987332       


Q ss_pred             -----------------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCc
Q 047629          482 -----------------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPN  544 (615)
Q Consensus       482 -----------------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~  544 (615)
                                       ...+.-++||||+|++|+|+.||+.|+..         |..+.+.+..        --.-||.
T Consensus       226 ~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~---------w~svfeql~~--------Vv~gdpp  288 (361)
T KOG1006|consen  226 VDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRK---------WDSVFEQLCQ--------VVIGDPP  288 (361)
T ss_pred             hccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcch---------HHHHHHHHHH--------HHcCCCC
Confidence                             11245689999999999999999999864         3333222210        0112222


Q ss_pred             -CCCCC-ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          545 -LESFY-PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       545 -l~~~~-~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       |..+. ..+....+.+++..|+-.|..+||+..++.+.
T Consensus       289 ~l~~~~~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~~  327 (361)
T KOG1006|consen  289 ILLFDKECVHYSFSMVRFINTCLIKDRSDRPKYDDLKKF  327 (361)
T ss_pred             eecCcccccccCHHHHHHHHHHhhcccccCcchhhhhcC
Confidence             22111 12355679999999999999999999998764

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=7.7e-26  Score=215.46  Aligned_cols=219  Identities=22%  Similarity=0.385  Sum_probs=164.5

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcC-------CCcEEEEEeecCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDS-------QGNRFLVYEYAENGS  404 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~-------~~~~~lV~E~~~~Gs  404 (615)
                      |.||++..  .|+.||+|+.-         ....+|+++|..++|+|++.++..|...       .+.+++|+++|+. +
T Consensus        31 geVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t~ylVf~~ceh-D  109 (376)
T KOG0669|consen   31 GEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRATFYLVFDFCEH-D  109 (376)
T ss_pred             HHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccceeeeeHHHhhh-h
Confidence            36887776  57889998763         2467899999999999999999887532       1237999999987 8


Q ss_pred             HHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--
Q 047629          405 LDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--  482 (615)
Q Consensus       405 L~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--  482 (615)
                      |.-.|.+...         .++...+.+++.++..||.|+|...   |+|||+|+.|+|++.++..||+|||+++.+.  
T Consensus       110 LaGlLsn~~v---------r~sls~Ikk~Mk~Lm~GL~~iHr~k---ilHRDmKaaNvLIt~dgilklADFGlar~fs~~  177 (376)
T KOG0669|consen  110 LAGLLSNRKV---------RFSLSEIKKVMKGLMNGLYYIHRNK---ILHRDMKAANVLITKDGILKLADFGLARAFSTS  177 (376)
T ss_pred             HHHHhcCccc---------cccHHHHHHHHHHHHHHHHHHHHhh---HHhhcccHhhEEEcCCceEEeeccccccceecc
Confidence            9888876542         3889999999999999999999998   9999999999999999999999999996542  


Q ss_pred             --------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHH-----
Q 047629          483 --------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE-----  531 (615)
Q Consensus       483 --------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~-----  531 (615)
                                                ..++++.|||.-|||+.||++|.+-+....+.....+...+...+..+.     
T Consensus       178 ~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~tkevWP~~d  257 (376)
T KOG0669|consen  178 KNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSITKEVWPNVD  257 (376)
T ss_pred             cccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCCcccCCCcc
Confidence                                      1256789999999999999999988877666555444333222111110     


Q ss_pred             ---------------HHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          532 ---------------KREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       532 ---------------~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                                     ....++.+.+.|-.+     +  ...++|+...+..||.+|+.+++++.+
T Consensus       258 ~lpL~~sie~ePl~~~~~rkv~n~~kp~~k-----d--~~a~dLle~ll~~DP~kR~~ad~alnh  315 (376)
T KOG0669|consen  258 NLPLYQSIELEPLPKGQKRKVKNRLKPYVK-----D--DEALDLLEKLLKLDPTKRIDADQALNH  315 (376)
T ss_pred             cchHHHhccCCCCCcchhhhhhhhcccccC-----C--hhHHHHHHHHhccCcccCcchHhhhch
Confidence                           001112222221111     1  135788999999999999999998865

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-24  Score=221.34  Aligned_cols=208  Identities=24%  Similarity=0.403  Sum_probs=160.9

Q ss_pred             eEEEEEE--CCeEEEEEEcc--------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          344 SVYRATI--DGKVLAVKKIK--------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       344 ~Vy~~~~--~g~~vAvK~~~--------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      .||++..  ..+.||||.-.              +...+|..|.+.+.||.||++++|+.-....++-|+|||++.+|+-
T Consensus       478 EVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsFCTVLEYceGNDLDF  557 (775)
T KOG1151|consen  478 EVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSFCTVLEYCEGNDLDF  557 (775)
T ss_pred             HHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccceeeeeecCCCchhH
Confidence            7999875  67899999642              2356799999999999999999998644457899999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC---CCcEEEeecCCCCCCCCC
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS---RFKAKIANFSLAAPATND  484 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~---~~~~kl~DFGla~~~~~~  484 (615)
                      ||+.++          .++++....|..||+.+|.||.+. +|||||-||||.||||.+   .|.+||.||||++.+.++
T Consensus       558 YLKQhk----------lmSEKEARSIiMQiVnAL~YLNEi-kpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMddd  626 (775)
T KOG1151|consen  558 YLKQHK----------LMSEKEARSIIMQIVNALKYLNEI-KPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDD  626 (775)
T ss_pred             HHHhhh----------hhhHHHHHHHHHHHHHHHHHHhcc-CCCeeeeccCCccEEEecCcccceeEeeecchhhhccCC
Confidence            998765          389999999999999999999998 688999999999999954   378999999999876432


Q ss_pred             ----------------------------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH
Q 047629          485 ----------------------------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE  530 (615)
Q Consensus       485 ----------------------------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~  530 (615)
                                                        ++.|+||||.||++|..+.|++||..........     .      
T Consensus       627 Sy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQdIL-----q------  695 (775)
T KOG1151|consen  627 SYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQDIL-----Q------  695 (775)
T ss_pred             ccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHHHHH-----h------
Confidence                                              4568999999999999999999997643221110     0      


Q ss_pred             HHHHHHHhhhcCCcCCCCCCh--HHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          531 EKREERLRNWMDPNLESFYPI--DGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       531 ~~~~~~~~~~~dp~l~~~~~~--~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                         ...+.+.-.    -.||.  -...+..+++++|++..-++|....++..
T Consensus       696 ---eNTIlkAtE----VqFP~KPvVsseAkaFIRRCLaYRKeDR~DV~qLA~  740 (775)
T KOG1151|consen  696 ---ENTILKATE----VQFPPKPVVSSEAKAFIRRCLAYRKEDRIDVQQLAC  740 (775)
T ss_pred             ---hhchhccee----ccCCCCCccCHHHHHHHHHHHHhhhhhhhhHHHHcc
Confidence               111111111    11221  12234578999999999999988777655

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.91  E-value=1.3e-23  Score=229.79  Aligned_cols=238  Identities=17%  Similarity=0.211  Sum_probs=156.9

Q ss_pred             ccccccccccc----ceEEEEEE------------------CCeEEEEEEccH-------HH--------------HHHH
Q 047629          332 TMNLSEHYSIG----KSVYRATI------------------DGKVLAVKKIKE-------DV--------------TEEL  368 (615)
Q Consensus       332 t~~~~~~~~iG----~~Vy~~~~------------------~g~~vAvK~~~~-------~~--------------~~Ei  368 (615)
                      .++|...+.||    |.||+|..                  +++.||||+++.       +|              ..|+
T Consensus       144 ~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~  223 (507)
T PLN03224        144 SDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEA  223 (507)
T ss_pred             ccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHH
Confidence            45777777777    48999964                  346799999752       22              2367


Q ss_pred             HHHHhcCCCCc-----ccEEEEEEcC-------CCcEEEEEeecCCCCHHHhhccCCCCCC--------------CCCcc
Q 047629          369 RILQRINHANL-----VKLMGVSSDS-------QGNRFLVYEYAENGSLDKWLHPKSKSSS--------------SSGSV  422 (615)
Q Consensus       369 ~~l~~l~H~ni-----v~l~g~~~~~-------~~~~~lV~E~~~~GsL~~~L~~~~~~~~--------------~~~~~  422 (615)
                      .++.+++|.++     ++++++|...       ++..+|||||+++|+|.++|+.......              .....
T Consensus       224 ~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~  303 (507)
T PLN03224        224 YMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQ  303 (507)
T ss_pred             HHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhccc
Confidence            77788877654     6788887531       3468999999999999999975321100              00001


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------------C-----
Q 047629          423 IFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------------D-----  484 (615)
Q Consensus       423 ~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------------~-----  484 (615)
                      ..++|..+..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||+++....             .     
T Consensus       304 ~~~~~~~~~~i~~ql~~aL~~lH~~~---ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE  380 (507)
T PLN03224        304 DKRDINVIKGVMRQVLTGLRKLHRIG---IVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPE  380 (507)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeChh
Confidence            13678899999999999999999987   99999999999999999999999999853210             0     


Q ss_pred             ----------------------------CCCcccchhHHHHHHHHHcCCC-CCCCCCCChhHHHHHHHHHHHhHHHHHHH
Q 047629          485 ----------------------------VMPKFDVFAFGVVLLELLSGKK-ATRTTENGKTAVLWKEIREVLKVEEKREE  535 (615)
Q Consensus       485 ----------------------------~~~k~DV~SfGvvl~ElltG~~-p~~~~~~~~~~~l~~~~~~~~~~~~~~~~  535 (615)
                                                  ...+.||||+||+++||++|.. |+.....-     .......-.    ...
T Consensus       381 ~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f-----~~~~~~~~~----~~~  451 (507)
T PLN03224        381 ELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLF-----NTELRQYDN----DLN  451 (507)
T ss_pred             hhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhh-----hhHHhhccc----hHH
Confidence                                        0124699999999999999875 55432110     000000000    000


Q ss_pred             HHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCC---CCCCCHHHHHHH
Q 047629          536 RLRNWMDPNLESFYPIDGALSLATLARACTMDKS---LSRPNMAEVVFN  581 (615)
Q Consensus       536 ~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP---~~RPsm~ev~~~  581 (615)
                      ..+........-...........+|+.+++..+|   .+|+|++|++++
T Consensus       452 ~~r~~~~~~~~~~~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~H  500 (507)
T PLN03224        452 RWRMYKGQKYDFSLLDRNKEAGWDLACKLITKRDQANRGRLSVGQALSH  500 (507)
T ss_pred             HHHhhcccCCCcccccccChHHHHHHHHHhccCCCCcccCCCHHHHhCC
Confidence            0111100011000111223456889999998766   689999999875

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.91  E-value=7.4e-24  Score=231.78  Aligned_cols=209  Identities=19%  Similarity=0.353  Sum_probs=169.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhc-CCCCcccEEEEEEc----CCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIK------EDVTEELRILQRI-NHANLVKLMGVSSD----SQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l-~H~niv~l~g~~~~----~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      +.||+++-  +|+.+|+|++.      ++...|.++|+.. +|||++.++|++..    .++++|||||||.+||..+.+
T Consensus        33 gkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~DqLWLVMEfC~gGSVTDLV  112 (953)
T KOG0587|consen   33 GKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGDQLWLVMEFCGGGSVTDLV  112 (953)
T ss_pred             eeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCCeEEEEeeccCCccHHHHH
Confidence            67777765  78899999875      4577788889887 79999999998753    234699999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------  483 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------  483 (615)
                      ++....        .+.|..+.-|+..++.||.+||.+.   ++|||||-.||||+.++.+|+.|||.++.++.      
T Consensus       113 Kn~~g~--------rl~E~~IaYI~re~lrgl~HLH~nk---viHRDikG~NiLLT~e~~VKLvDFGvSaQldsT~grRn  181 (953)
T KOG0587|consen  113 KNTKGN--------RLKEEWIAYILREILRGLAHLHNNK---VIHRDIKGQNVLLTENAEVKLVDFGVSAQLDSTVGRRN  181 (953)
T ss_pred             hhhccc--------chhhHHHHHHHHHHHHHHHHHhhcc---eeeecccCceEEEeccCcEEEeeeeeeeeeeccccccc
Confidence            876532        4999999999999999999999987   99999999999999999999999999865421      


Q ss_pred             ----------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          484 ----------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       484 ----------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                            .+...+|+||+|++-.||.-|.+|+.+...         ++..+          .-.-
T Consensus       182 T~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHP---------mraLF----------~IpR  242 (953)
T KOG0587|consen  182 TFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHP---------MRALF----------LIPR  242 (953)
T ss_pred             CcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcch---------hhhhc----------cCCC
Confidence                                  145589999999999999999999876542         11111          1112


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .|...-.-|..-..++-+++..|+..|-++||++.+++++
T Consensus       243 NPPPkLkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~h  282 (953)
T KOG0587|consen  243 NPPPKLKRPKKWSKKFNDFISTCLVKDYEQRPSTEELLKH  282 (953)
T ss_pred             CCCccccchhhHHHHHHHHHHHHHhhccccCcchhhhccC
Confidence            2333334466777789999999999999999999998874

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.91  E-value=9.2e-25  Score=237.79  Aligned_cols=209  Identities=23%  Similarity=0.389  Sum_probs=154.1

Q ss_pred             cccceEEEEEECCeEEEEEEccHH----HHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          340 SIGKSVYRATIDGKVLAVKKIKED----VTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       340 ~iG~~Vy~~~~~g~~vAvK~~~~~----~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      .-|..||+|.+.|+.||||++-.+    ..+|+..|+.- +|+|||++++.-. .+...||..|.|. .+|++++.....
T Consensus       521 s~Gt~Vf~G~ye~R~VAVKrll~e~~~~A~rEi~lL~eSD~H~NviRyyc~E~-d~qF~YIalELC~-~sL~dlie~~~~  598 (903)
T KOG1027|consen  521 SNGTVVFRGVYEGREVAVKRLLEEFFDFAQREIQLLQESDEHPNVIRYYCSEQ-DRQFLYIALELCA-CSLQDLIESSGL  598 (903)
T ss_pred             CCCcEEEEEeeCCceehHHHHhhHhHHHHHHHHHHHHhccCCCceEEEEeecc-CCceEEEEehHhh-hhHHHHHhcccc
Confidence            335689999999999999999765    45899999988 7999999987643 3457899999996 599999987511


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC-----CCcEEEeecCCCCCCCCC-----
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS-----RFKAKIANFSLAAPATND-----  484 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-----~~~~kl~DFGla~~~~~~-----  484 (615)
                      .. .     ...-...+.+..|++.||++||+.+   ||||||||.||||+.     ..+++|+|||+++....+     
T Consensus       599 d~-~-----~~~~i~~~~~l~q~~~GlaHLHsl~---iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~  669 (903)
T KOG1027|consen  599 DV-E-----MQSDIDPISVLSQIASGLAHLHSLK---IVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFS  669 (903)
T ss_pred             ch-h-----hcccccHHHHHHHHHHHHHHHHhcc---cccccCCCceEEEEccCCCcceeEEecccccccccCCCcchhh
Confidence            10 0     1111345677889999999999987   999999999999976     268999999999765321     


Q ss_pred             ---------------------CCCcccchhHHHHHHHHHcC-CCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          485 ---------------------VMPKFDVFAFGVVLLELLSG-KKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       485 ---------------------~~~k~DV~SfGvvl~ElltG-~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                           -+..+|+||+|||+|..++| +.||...-..+...                  +...- 
T Consensus       670 r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~~NI------------------l~~~~-  730 (903)
T KOG1027|consen  670 RLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQANI------------------LTGNY-  730 (903)
T ss_pred             cccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHHhhhhh------------------hcCcc-
Confidence                                 13468999999999999995 78987543211110                  00000 


Q ss_pred             CcCCCCCC-hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          543 PNLESFYP-IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       543 p~l~~~~~-~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       .+..--+ .++  +..+|+.++++.+|..||++.+|+.+
T Consensus       731 -~L~~L~~~~d~--eA~dLI~~ml~~dP~~RPsa~~VL~H  767 (903)
T KOG1027|consen  731 -TLVHLEPLPDC--EAKDLISRMLNPDPQLRPSATDVLNH  767 (903)
T ss_pred             -ceeeeccCchH--HHHHHHHHhcCCCcccCCCHHHHhCC
Confidence             0100001 111  56899999999999999999999853

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.90  E-value=6.8e-24  Score=216.88  Aligned_cols=212  Identities=21%  Similarity=0.263  Sum_probs=164.1

Q ss_pred             ccccccccc----ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEE
Q 047629          334 NLSEHYSIG----KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRINHANLVKLMGVSSDSQGNRFLVY  397 (615)
Q Consensus       334 ~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~  397 (615)
                      .|.....+|    |.||.+..  +|+.+|.|++.+.          ...|-.+|.+++.+.||.|--.+. ....++||+
T Consensus       186 ~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfe-Tkd~LClVL  264 (591)
T KOG0986|consen  186 TFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFE-TKDALCLVL  264 (591)
T ss_pred             ceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeec-CCCceEEEE
Confidence            355555555    47888776  7999999988532          457999999999999998865554 455899999


Q ss_pred             eecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCC
Q 047629          398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSL  477 (615)
Q Consensus       398 E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  477 (615)
                      ..|.+|+|.-+|.+....        .+++...+-++.+|+.||++||...   ||.||+||+|||||++|+++|+|.||
T Consensus       265 tlMNGGDLkfHiyn~g~~--------gF~e~ra~FYAAEi~cGLehlH~~~---iVYRDLKPeNILLDd~GhvRISDLGL  333 (591)
T KOG0986|consen  265 TLMNGGDLKFHIYNHGNP--------GFDEQRARFYAAEIICGLEHLHRRR---IVYRDLKPENILLDDHGHVRISDLGL  333 (591)
T ss_pred             EeecCCceeEEeeccCCC--------CCchHHHHHHHHHHHhhHHHHHhcc---eeeccCChhheeeccCCCeEeeccce
Confidence            999999999999876642        3899999999999999999999998   99999999999999999999999999


Q ss_pred             CCCCCC----------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHH
Q 047629          478 AAPATN----------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREE  535 (615)
Q Consensus       478 a~~~~~----------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~  535 (615)
                      |.....                      .++...|.||+||+||||+.|+.||....+.   +-++++.+...       
T Consensus       334 Avei~~g~~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeK---vk~eEvdrr~~-------  403 (591)
T KOG0986|consen  334 AVEIPEGKPIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEK---VKREEVDRRTL-------  403 (591)
T ss_pred             EEecCCCCccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhh---hhHHHHHHHHh-------
Confidence            954321                      2456789999999999999999999754422   11222221110       


Q ss_pred             HHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCH
Q 047629          536 RLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNM  575 (615)
Q Consensus       536 ~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm  575 (615)
                           -|   ..+|+.....+...+...-+..||++|---
T Consensus       404 -----~~---~~ey~~kFS~eakslc~~LL~Kdp~~RLGc  435 (591)
T KOG0986|consen  404 -----ED---PEEYSDKFSEEAKSLCEGLLTKDPEKRLGC  435 (591)
T ss_pred             -----cc---hhhcccccCHHHHHHHHHHHccCHHHhccC
Confidence                 01   134555555567888889999999998744

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=6.6e-24  Score=237.08  Aligned_cols=227  Identities=22%  Similarity=0.254  Sum_probs=172.0

Q ss_pred             ceeeeHHHHHHHccccccccccc----ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEE
Q 047629          320 PIVYEIEVIMESTMNLSEHYSIG----KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLM  383 (615)
Q Consensus       320 ~~~~~~~~l~~at~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~  383 (615)
                      |++-...+++-...+|.-...||    |.|...+.  .++.+|.|++.+          -|.+|-++|..-+.+.|+.|.
T Consensus        62 p~v~~v~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~Lh  141 (1317)
T KOG0612|consen   62 PIVKKVKELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLH  141 (1317)
T ss_pred             HHHHHHHHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHH
Confidence            44555666776677777777777    46766666  689999999874          278899999999999999998


Q ss_pred             EEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCcee
Q 047629          384 GVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ  463 (615)
Q Consensus       384 g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NIL  463 (615)
                      -.+.+ +.++|+|||||+||+|-..|.....          ++......++..|..||.-||+.|   +|||||||.|||
T Consensus       142 yAFQD-~~~LYlVMdY~pGGDlltLlSk~~~----------~pE~~ArFY~aEiVlAldslH~mg---yVHRDiKPDNvL  207 (1317)
T KOG0612|consen  142 YAFQD-ERYLYLVMDYMPGGDLLTLLSKFDR----------LPEDWARFYTAEIVLALDSLHSMG---YVHRDIKPDNVL  207 (1317)
T ss_pred             HHhcC-ccceEEEEecccCchHHHHHhhcCC----------ChHHHHHHHHHHHHHHHHHHHhcc---ceeccCCcceeE
Confidence            77665 4589999999999999999976542          788888888999999999999999   999999999999


Q ss_pred             eCCCCcEEEeecCCCCCCC-----------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCC
Q 047629          464 LDSRFKAKIANFSLAAPAT-----------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENG  514 (615)
Q Consensus       464 ld~~~~~kl~DFGla~~~~-----------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~  514 (615)
                      ||.+|.+||+|||.+-.+.                             +.+.+.+|.||+||++|||+.|..||....  
T Consensus       208 ld~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYads--  285 (1317)
T KOG0612|consen  208 LDKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADS--  285 (1317)
T ss_pred             ecccCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHH--
Confidence            9999999999999752221                             235678999999999999999999997432  


Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC--hHHHHHHHHHHHHhhhcCCCCCCC---HHHHHHH
Q 047629          515 KTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP--IDGALSLATLARACTMDKSLSRPN---MAEVVFN  581 (615)
Q Consensus       515 ~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~--~~~~~~l~~l~~~C~~~dP~~RPs---m~ev~~~  581 (615)
                          +..              ...++|+-.=.-.||  .+......+|+++-+. +|+.|-.   ..|+-.+
T Consensus       286 ----lve--------------TY~KIm~hk~~l~FP~~~~VSeeakdLI~~ll~-~~e~RLgrngiedik~H  338 (1317)
T KOG0612|consen  286 ----LVE--------------TYGKIMNHKESLSFPDETDVSEEAKDLIEALLC-DREVRLGRNGIEDIKNH  338 (1317)
T ss_pred             ----HHH--------------HHHHHhchhhhcCCCcccccCHHHHHHHHHHhc-ChhhhcccccHHHHHhC
Confidence                121              122223321111233  2344456677766554 6677776   8887765

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.89  E-value=3e-23  Score=208.90  Aligned_cols=225  Identities=21%  Similarity=0.257  Sum_probs=162.3

Q ss_pred             eEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhcCC--C----CcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          344 SVYRATI--DGKVLAVKKIK------EDVTEELRILQRINH--A----NLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       344 ~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l~H--~----niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      .|-.+..  .+..||||+++      +...-|+++|.++.+  |    -+|.+.+|+ +-.+..++|+|.+ +-|+.+||
T Consensus       104 kV~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wF-dyrghiCivfell-G~S~~dFl  181 (415)
T KOG0671|consen  104 KVVECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWF-DYRGHICIVFELL-GLSTFDFL  181 (415)
T ss_pred             ceEEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhh-hccCceEEEEecc-ChhHHHHh
Confidence            3444433  47889999987      345679999999942  2    256777765 4567899999998 34999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC--------------------CCc
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS--------------------RFK  469 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~--------------------~~~  469 (615)
                      ..+..        .+++..++..|+.|++++++|||+.+   ++|-||||+|||+.+                    +..
T Consensus       182 k~N~y--------~~fpi~~ir~m~~QL~~sv~fLh~~k---l~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~  250 (415)
T KOG0671|consen  182 KENNY--------IPFPIDHIRHMGYQLLESVAFLHDLK---LTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTA  250 (415)
T ss_pred             ccCCc--------cccchHHHHHHHHHHHHHHHHHHhcc---eeecCCChheEEEeccceEEEeccCCccceeccCCCcc
Confidence            88654        35889999999999999999999998   999999999999831                    345


Q ss_pred             EEEeecCCCCCCCC--------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhH
Q 047629          470 AKIANFSLAAPATN--------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV  529 (615)
Q Consensus       470 ~kl~DFGla~~~~~--------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~  529 (615)
                      +||.|||.|.....                    +.+.++||||+||||.||.+|...|...++.+.+.+.+.+...+..
T Consensus       251 I~vIDFGsAtf~~e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaMMerIlGp~P~  330 (415)
T KOG0671|consen  251 IKVIDFGSATFDHEHHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLEHLAMMERILGPIPS  330 (415)
T ss_pred             eEEEecCCcceeccCcceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHHHHHHHHHhhCCCcH
Confidence            89999999865422                    3567899999999999999999999888766554443333221111


Q ss_pred             HHHHHH---H--HhhhcC---------------Cc-C---CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          530 EEKREE---R--LRNWMD---------------PN-L---ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       530 ~~~~~~---~--~~~~~d---------------p~-l---~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .-..+.   +  -..-+|               +. .   .-.....+...+.+|+++++..||.+|+|++|++.+
T Consensus       331 ~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL~H  406 (415)
T KOG0671|consen  331 RMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLREALSH  406 (415)
T ss_pred             HHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccHHHHhcC
Confidence            000000   0  001111               10 0   011223567789999999999999999999999864

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=1.8e-23  Score=205.63  Aligned_cols=195  Identities=27%  Similarity=0.354  Sum_probs=152.7

Q ss_pred             CCeEEEEEEccHHH----------HHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCC
Q 047629          351 DGKVLAVKKIKEDV----------TEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSG  420 (615)
Q Consensus       351 ~g~~vAvK~~~~~~----------~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~  420 (615)
                      .|+.+|+|.+++++          ..|-.+|+.-+||.+..|.-.+ +....+++||||+.+|.|.-+|.+.+       
T Consensus       192 t~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsF-Qt~drlCFVMeyanGGeLf~HLsrer-------  263 (516)
T KOG0690|consen  192 TGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSF-QTQDRLCFVMEYANGGELFFHLSRER-------  263 (516)
T ss_pred             cCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhh-ccCceEEEEEEEccCceEeeehhhhh-------
Confidence            78999999998753          3477889999999988776444 44558999999999999999987754       


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC-------------------
Q 047629          421 SVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA-------------------  481 (615)
Q Consensus       421 ~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~-------------------  481 (615)
                         .+++....-+...|..+|.|||+++   ||.||||.+|.|||.+|.+||+||||.+..                   
T Consensus       264 ---~FsE~RtRFYGaEIvsAL~YLHs~~---ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~~g~t~kTFCGTPEYLAP  337 (516)
T KOG0690|consen  264 ---VFSEDRTRFYGAEIVSALGYLHSRN---IVYRDLKLENLLLDKDGHIKITDFGLCKEEIKYGDTTKTFCGTPEYLAP  337 (516)
T ss_pred             ---cccchhhhhhhHHHHHHhhhhhhCC---eeeeechhhhheeccCCceEeeecccchhcccccceeccccCChhhcCc
Confidence               3788888889999999999999988   999999999999999999999999998642                   


Q ss_pred             ----CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHH
Q 047629          482 ----TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSL  557 (615)
Q Consensus       482 ----~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l  557 (615)
                          .+++...+|.|..|||+|||++|+.||...+.+....+       +-.+           |    -.+|.....+.
T Consensus       338 EVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~kLFeL-------Il~e-----------d----~kFPr~ls~eA  395 (516)
T KOG0690|consen  338 EVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHEKLFEL-------ILME-----------D----LKFPRTLSPEA  395 (516)
T ss_pred             hhhccccccceeehhhhhHHHHHHHhccCcccccchhHHHHH-------HHhh-----------h----ccCCccCCHHH
Confidence                23466789999999999999999999987654322111       1100           0    12344444456


Q ss_pred             HHHHHHhhhcCCCCCCC-----HHHHHHH
Q 047629          558 ATLARACTMDKSLSRPN-----MAEVVFN  581 (615)
Q Consensus       558 ~~l~~~C~~~dP~~RPs-----m~ev~~~  581 (615)
                      ..|....+..||.+|--     ++||.++
T Consensus       396 ktLLsGLL~kdP~kRLGgGpdDakEi~~h  424 (516)
T KOG0690|consen  396 KTLLSGLLKKDPKKRLGGGPDDAKEIMRH  424 (516)
T ss_pred             HHHHHHHhhcChHhhcCCCchhHHHHHhh
Confidence            77888899999999963     5566543

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.89  E-value=4.6e-22  Score=191.91  Aligned_cols=173  Identities=38%  Similarity=0.603  Sum_probs=150.3

Q ss_pred             ceEEEEEEC--CeEEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATID--GKVLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~~--g~~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      +.||++...  |+.+++|....        .+.+|++.+++++|++++++++++... ...++++||+++++|.+++...
T Consensus         7 ~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~-~~~~~~~e~~~~~~l~~~~~~~   85 (215)
T cd00180           7 GTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDE-NHLYLVMEYCEGGSLKDLLKEN   85 (215)
T ss_pred             eEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecC-CeEEEEEecCCCCcHHHHHHhc
Confidence            489999985  89999998853        377899999999999999999998754 4789999999999999999765


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC-CCcEEEeecCCCCCCCC--------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS-RFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-~~~~kl~DFGla~~~~~--------  483 (615)
                      ..         .+++..+..++.+++.++.|||+.+   ++|+||+|.||+++. +..++++|||.+.....        
T Consensus        86 ~~---------~~~~~~~~~~~~~l~~~l~~lh~~~---~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~  153 (215)
T cd00180          86 EG---------KLSEDEILRILLQILEGLEYLHSNG---IIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTI  153 (215)
T ss_pred             cC---------CCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcchhhcc
Confidence            31         3889999999999999999999997   999999999999999 89999999998753321        


Q ss_pred             ----------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          484 ----------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       484 ----------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                      ..+.+.|+|++|++++||                                              
T Consensus       154 ~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l----------------------------------------------  187 (215)
T cd00180         154 VGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL----------------------------------------------  187 (215)
T ss_pred             cCCCCccChhHhcccCCCCchhhhHHHHHHHHHH----------------------------------------------
Confidence                            234679999999999998                                              


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                             ..+.+++..|++.+|.+||++.++++.
T Consensus       188 -------~~~~~~l~~~l~~~p~~R~~~~~l~~~  214 (215)
T cd00180         188 -------PELKDLIRKMLQKDPEKRPSAKEILEH  214 (215)
T ss_pred             -------HHHHHHHHHHhhCCcccCcCHHHHhhC
Confidence                   235788999999999999999999865

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=1.8e-23  Score=211.11  Aligned_cols=206  Identities=25%  Similarity=0.351  Sum_probs=157.7

Q ss_pred             cccccccccc--ceEEEEEEC--CeEEEEEEccHHH----------HHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEE
Q 047629          333 MNLSEHYSIG--KSVYRATID--GKVLAVKKIKEDV----------TEELRILQRI-NHANLVKLMGVSSDSQGNRFLVY  397 (615)
Q Consensus       333 ~~~~~~~~iG--~~Vy~~~~~--g~~vAvK~~~~~~----------~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~  397 (615)
                      .+|....+-|  |.|-.+...  .+.+|||++++++          ..|-.+|.-- +-|.+++|..++.. -..+|+||
T Consensus       351 FnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQT-mDRLyFVM  429 (683)
T KOG0696|consen  351 FNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQT-MDRLYFVM  429 (683)
T ss_pred             cceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhh-hhheeeEE
Confidence            4454433333  456666654  4779999998763          2466666655 56678888776654 44899999


Q ss_pred             eecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCC
Q 047629          398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSL  477 (615)
Q Consensus       398 E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  477 (615)
                      ||+.+|+|.-++..-++          +.++...-+|..||-||-+||+++   |+.||||..|||||.++.+||+|||+
T Consensus       430 EyvnGGDLMyhiQQ~Gk----------FKEp~AvFYAaEiaigLFFLh~kg---IiYRDLKLDNvmLd~eGHiKi~DFGm  496 (683)
T KOG0696|consen  430 EYVNGGDLMYHIQQVGK----------FKEPVAVFYAAEIAIGLFFLHSKG---IIYRDLKLDNVMLDSEGHIKIADFGM  496 (683)
T ss_pred             EEecCchhhhHHHHhcc----------cCCchhhhhhHHHHHHhhhhhcCC---eeeeeccccceEeccCCceEeeeccc
Confidence            99999999988876554          677788899999999999999998   99999999999999999999999999


Q ss_pred             CCCC-----------------------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHH
Q 047629          478 AAPA-----------------------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKRE  534 (615)
Q Consensus       478 a~~~-----------------------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~  534 (615)
                      .+..                       ...+...+|.|||||+||||+.|+.||+..++.+                   
T Consensus       497 cKEni~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~e-------------------  557 (683)
T KOG0696|consen  497 CKENIFDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDE-------------------  557 (683)
T ss_pred             ccccccCCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCHHH-------------------
Confidence            8642                       1225568999999999999999999998755322                   


Q ss_pred             HHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCC
Q 047629          535 ERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPN  574 (615)
Q Consensus       535 ~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPs  574 (615)
                       ....+++.+.  .||.....+...+.+.-+-..|.+|--
T Consensus       558 -lF~aI~ehnv--syPKslSkEAv~ickg~ltK~P~kRLG  594 (683)
T KOG0696|consen  558 -LFQAIMEHNV--SYPKSLSKEAVAICKGLLTKHPGKRLG  594 (683)
T ss_pred             -HHHHHHHccC--cCcccccHHHHHHHHHHhhcCCccccC
Confidence             1122233222  477777777888999999999998853

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.88  E-value=3.3e-23  Score=192.48  Aligned_cols=157  Identities=23%  Similarity=0.405  Sum_probs=127.3

Q ss_pred             eEEEEEECCeEEEEEEccH--------HHHHHHHHHHh-cCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          344 SVYRATIDGKVLAVKKIKE--------DVTEELRILQR-INHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       344 ~Vy~~~~~g~~vAvK~~~~--------~~~~Ei~~l~~-l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      .+|+-..+|+..|||+++.        ...+|+++..+ ...|.+|.++|...+ ++..|+.||.|.- ||+.|-..--.
T Consensus        63 ekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~r-egdvwIcME~M~t-Sldkfy~~v~~  140 (282)
T KOG0984|consen   63 EKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFR-EGDVWICMELMDT-SLDKFYRKVLK  140 (282)
T ss_pred             hheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhc-cccEEEeHHHhhh-hHHHHHHHHHh
Confidence            4666667999999999863        35567776554 478999999998764 5689999999964 88877543221


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------------  482 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------------  482 (615)
                      ..      ..+++..+=+|+..|.+||.|||++-  .++|||+||+|||++.+|++|++|||++..+.            
T Consensus       141 ~g------~~ipE~vlGkIa~Svv~al~~L~~kL--~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dSiAkt~daGCk  212 (282)
T KOG0984|consen  141 KG------GTIPEDVLGKIAVSVVHALEFLHSKL--SVIHRDVKPSNILINYDGQVKICDFGISGYLVDSIAKTMDAGCK  212 (282)
T ss_pred             cC------CcCchHHhhHhHHHHHHHHHHHHHHh--hhhhccCCcceEEEccCCcEEEcccccceeehhhhHHHHhcCCC
Confidence            11      13788889999999999999999986  59999999999999999999999999974331            


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCC
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRT  510 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~  510 (615)
                                    ..++-|+||||+|+.+.||.+++.|++.
T Consensus       213 pYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~  254 (282)
T KOG0984|consen  213 PYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYES  254 (282)
T ss_pred             ccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccc
Confidence                          1356799999999999999999999874

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.88  E-value=1.3e-22  Score=191.18  Aligned_cols=219  Identities=20%  Similarity=0.308  Sum_probs=159.6

Q ss_pred             eEEEEEE--CCeEEEEEEcc----HHHHHHHHHHHhcC-CCCcccEEEEEEcCCC-cEEEEEeecCCCCHHHhhccCCCC
Q 047629          344 SVYRATI--DGKVLAVKKIK----EDVTEELRILQRIN-HANLVKLMGVSSDSQG-NRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       344 ~Vy~~~~--~g~~vAvK~~~----~~~~~Ei~~l~~l~-H~niv~l~g~~~~~~~-~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      .||.|..  +++.+.||.++    +.+.+|+.||..+. |+||++|++...+... ...|++||+.|-+....-.     
T Consensus        53 EVFeg~~~~~~eK~ViKiLKPVkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiFE~v~n~Dfk~ly~-----  127 (338)
T KOG0668|consen   53 EVFEGINITNNEKCVIKILKPVKKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIFEYVNNTDFKQLYP-----  127 (338)
T ss_pred             hHhcccccCCCceEEEeeechHHHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHhhhhccccHHHHhh-----
Confidence            7888884  78899999986    56889999999996 9999999998766543 3679999999977665432     


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC-CcEEEeecCCCCCCCC-----------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR-FKAKIANFSLAAPATN-----------  483 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-~~~kl~DFGla~~~~~-----------  483 (615)
                              .|+-..+..++.++++||.|+|+.|   |.|||+||.|+++|.. -..+|.|+|||.....           
T Consensus       128 --------tl~d~dIryY~~elLkALdyCHS~G---ImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~eYnVRVASR  196 (338)
T KOG0668|consen  128 --------TLTDYDIRYYIYELLKALDYCHSMG---IMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASR  196 (338)
T ss_pred             --------hhchhhHHHHHHHHHHHHhHHHhcC---cccccCCcceeeechhhceeeeeecchHhhcCCCceeeeeeehh
Confidence                    3777888999999999999999999   9999999999999975 5689999999954321           


Q ss_pred             ------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCC-hhHHHHHHHHHHHhHHHHHH--HHHhhhcCCcCCC-
Q 047629          484 ------------DVMPKFDVFAFGVVLLELLSGKKATRTTENG-KTAVLWKEIREVLKVEEKRE--ERLRNWMDPNLES-  547 (615)
Q Consensus       484 ------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~-~~~~l~~~~~~~~~~~~~~~--~~~~~~~dp~l~~-  547 (615)
                                  .+.-.-|+|||||+|.+|+..++||....+. +..+-   +..++..++...  .+..--+||+..+ 
T Consensus       197 yfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVk---IakVLGt~el~~Yl~KY~i~Ldp~~~~i  273 (338)
T KOG0668|consen  197 YFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVK---IAKVLGTDELYAYLNKYQIDLDPQFEDI  273 (338)
T ss_pred             hcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHH---HHHHhChHHHHHHHHHHccCCChhHhhH
Confidence                        1344679999999999999999998765432 22221   222222111100  1111112332210 


Q ss_pred             --C---------CC---hH-HHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 --F---------YP---ID-GALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 --~---------~~---~~-~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                        .         .+   .. ...+.++++...+..|-.+|||++|.+.+
T Consensus       274 ~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~H  322 (338)
T KOG0668|consen  274 LGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMAH  322 (338)
T ss_pred             hhccccccHHHhCCccccccCChHHHHHHHHHHhhccccccchHHHhcC
Confidence              0         00   01 12457899999999999999999998764

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.88  E-value=9.4e-23  Score=211.18  Aligned_cols=205  Identities=22%  Similarity=0.289  Sum_probs=154.1

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.||.|..  +|+.||||.+.         ..+++|+.||.+++||.||.|.-.|...+ ..++|||-+ +|+..+.+-.
T Consensus       578 G~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~e-rvFVVMEKl-~GDMLEMILS  655 (888)
T KOG4236|consen  578 GTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPE-RVFVVMEKL-HGDMLEMILS  655 (888)
T ss_pred             eeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCc-eEEEEehhh-cchHHHHHHH
Confidence            58999987  79999999885         34789999999999999999998887554 799999999 5676666654


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC---CcEEEeecCCCCCCCCC----
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR---FKAKIANFSLAAPATND----  484 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~---~~~kl~DFGla~~~~~~----  484 (615)
                      ..+.        .|+...-..+..||+.+|.|||.++   |+|+||||+||||.+.   -++||+|||+|+.....    
T Consensus       656 sEkg--------RL~er~TkFlvtQIL~ALr~LH~kn---IvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksFRr  724 (888)
T KOG4236|consen  656 SEKG--------RLPERITKFLVTQILVALRYLHFKN---IVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSFRR  724 (888)
T ss_pred             hhcc--------cchHHHHHHHHHHHHHHHHHhhhcc---eeeccCCchheeeccCCCCCceeeccccceeecchhhhhh
Confidence            4432        3888888888999999999999998   9999999999999654   57999999999876432    


Q ss_pred             ------------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          485 ------------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       485 ------------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                        +...-|+||.||++|--++|..||...++-...     +..            ..+|=|.- 
T Consensus       725 sVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEdIndQ-----IQN------------AaFMyPp~-  786 (888)
T KOG4236|consen  725 SVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDINDQ-----IQN------------AAFMYPPN-  786 (888)
T ss_pred             hhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCccchhHH-----hhc------------cccccCCC-
Confidence                              345679999999999999999999866542111     110            11121111 


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                        --.+.....++|+...++..-.+|-|.+.-+.
T Consensus       787 --PW~eis~~AidlIn~LLqVkm~kRysvdk~ls  818 (888)
T KOG4236|consen  787 --PWSEISPEAIDLINNLLQVKMRKRYSVDKSLS  818 (888)
T ss_pred             --chhhcCHHHHHHHHHHHHHHHHHhcchHhhcc
Confidence              01122334567777777777777877765543

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=3.7e-22  Score=210.67  Aligned_cols=160  Identities=22%  Similarity=0.334  Sum_probs=131.2

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.|..+.-  +...+|.|.+++          .+.+|.+||..-.++.||+|+--+.+. ..+|+||||+++|++..+|.
T Consensus       643 GeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDk-dnLYFVMdYIPGGDmMSLLI  721 (1034)
T KOG0608|consen  643 GEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDK-DNLYFVMDYIPGGDMMSLLI  721 (1034)
T ss_pred             ceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccC-CceEEEEeccCCccHHHHHH
Confidence            45555443  456789998864          256799999999999999999776654 48999999999999999998


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      +.+          .+.+.....++..+..++++.|..+   +|||||||.|||||.+|.+||+||||..-+.        
T Consensus       722 rmg----------IFeE~LARFYIAEltcAiesVHkmG---FIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHdskYY  788 (1034)
T KOG0608|consen  722 RMG----------IFEEDLARFYIAELTCAIESVHKMG---FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYY  788 (1034)
T ss_pred             Hhc----------cCHHHHHHHHHHHHHHHHHHHHhcc---ceecccCccceEEccCCceeeeeccccccceeccccccc
Confidence            755          2667777778889999999999998   9999999999999999999999999973210        


Q ss_pred             ---------------------------------------------------------CCCCCcccchhHHHHHHHHHcCC
Q 047629          483 ---------------------------------------------------------NDVMPKFDVFAFGVVLLELLSGK  505 (615)
Q Consensus       483 ---------------------------------------------------------~~~~~k~DV~SfGvvl~ElltG~  505 (615)
                                                                               ..++..+|.||.|||||||+.|+
T Consensus       789 q~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~~g~  868 (1034)
T KOG0608|consen  789 QEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEMLVGQ  868 (1034)
T ss_pred             cCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHhhCC
Confidence                                                                     00234689999999999999999


Q ss_pred             CCCCCCCCChh
Q 047629          506 KATRTTENGKT  516 (615)
Q Consensus       506 ~p~~~~~~~~~  516 (615)
                      .||.....++.
T Consensus       869 ~pf~~~tp~~t  879 (1034)
T KOG0608|consen  869 PPFLADTPGET  879 (1034)
T ss_pred             CCccCCCCCcc
Confidence            99987765544

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.87  E-value=6.1e-23  Score=197.60  Aligned_cols=226  Identities=22%  Similarity=0.310  Sum_probs=161.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCC----CcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQ----GNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~----~~~~lV~E~~~~GsL~~  407 (615)
                      |.||..+.  +|+.||.|++.         +.+.+|+++|.-++|.|+...++.-....    .++|++.|.|.. +|..
T Consensus        67 GVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~TELmQS-DLHK  145 (449)
T KOG0664|consen   67 GVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVLTELMQS-DLHK  145 (449)
T ss_pred             eEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHHHHHHHh-hhhh
Confidence            46666665  79999999986         34668999999999999999988754222    136788999864 7887


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN----  483 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~----  483 (615)
                      .+-...          .|+-..+.-+..||.+||.|||+.+   |.||||||.|.|++.|...||+|||+++....    
T Consensus       146 IIVSPQ----------~Ls~DHvKVFlYQILRGLKYLHsA~---ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~~~  212 (449)
T KOG0664|consen  146 IIVSPQ----------ALTPDHVKVFVYQILRGLKYLHTAN---ILHRDIKPGNLLVNSNCILKICDFGLARTWDQRDRL  212 (449)
T ss_pred             eeccCC----------CCCcchhhhhHHHHHhhhHHHhhcc---hhhccCCCccEEeccCceEEecccccccccchhhhh
Confidence            775433          4788888889999999999999998   99999999999999999999999999986532    


Q ss_pred             ---------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHH-------HH
Q 047629          484 ---------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKR-------EE  535 (615)
Q Consensus       484 ---------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~  535 (615)
                                           .++...||||.||++.||+-+|--|.....-+...+...+......+..+       ..
T Consensus       213 hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~lItdLLGTPs~EaMr~ACEGAk~H  292 (449)
T KOG0664|consen  213 NMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDLLGTPSQEAMKYACEGAKNH  292 (449)
T ss_pred             hhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccChHHHHHHHHHHhCCCcHHHHHHHhhhhHHH
Confidence                                 26778999999999999999888777655444443332222211111111       11


Q ss_pred             HHhhh-cCCcCCCCCC----hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          536 RLRNW-MDPNLESFYP----IDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       536 ~~~~~-~dp~l~~~~~----~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      .++.- -.|.+..-|.    .+.-.+...+....+..||++|.+..+.+..+
T Consensus       293 ~LR~~~k~Ps~~vLYtlsS~~~~~heav~~~~~~l~~d~dkris~~~A~~~~  344 (449)
T KOG0664|consen  293 VLRAGLRAPDTQRLYKIASPDDKNHEAVDLLQKLLHFDPDKRISVEEALQHR  344 (449)
T ss_pred             hhccCCCCCCccceeeecCCcccchHHHHHHHHHhCCCCcccccHhhhcccc
Confidence            11111 1222222121    12223456777788899999999988887654

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.87  E-value=2e-22  Score=198.62  Aligned_cols=212  Identities=20%  Similarity=0.315  Sum_probs=154.6

Q ss_pred             CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCC-----CcEEEEEeecCCCCHHHhhccCCCCC
Q 047629          351 DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQ-----GNRFLVYEYAENGSLDKWLHPKSKSS  416 (615)
Q Consensus       351 ~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~-----~~~~lV~E~~~~GsL~~~L~~~~~~~  416 (615)
                      .++.||+|++..         ...+|..++..++|+||++++.++...+     .+.|+|||+|. ++|.+.+...    
T Consensus        40 ~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y~v~e~m~-~nl~~vi~~e----  114 (369)
T KOG0665|consen   40 LGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVYLVMELMD-ANLCQVILME----  114 (369)
T ss_pred             ccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHHHHHHhhh-hHHHHHHHHh----
Confidence            578999998853         4568999999999999999999875322     13689999996 5999888731    


Q ss_pred             CCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------------
Q 047629          417 SSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------------  483 (615)
Q Consensus       417 ~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------------  483 (615)
                              ++-..+..|..|++.|+.|||+.+   |+||||||+||++..+..+||.|||+|+....             
T Consensus       115 --------lDH~tis~i~yq~~~~ik~lhs~~---IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~~~mtpyVvtRyy  183 (369)
T KOG0665|consen  115 --------LDHETISYILYQMLCGIKHLHSAG---IIHRDLKPSNIVVNSDCTLKILDFGLARTEDTDFMMTPYVVTRYY  183 (369)
T ss_pred             --------cchHHHHHHHHHHHHHHHHHHhcc---eeecccCcccceecchhheeeccchhhcccCcccccCchhheeec
Confidence                    677788899999999999999998   99999999999999999999999999975421             


Q ss_pred             ---------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHH-----HHHHHh-----------
Q 047629          484 ---------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEK-----REERLR-----------  538 (615)
Q Consensus       484 ---------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~-----------  538 (615)
                               .+.+++||||.||++.||++|+--|.+.+   ....|..+.+.++..+.     .....+           
T Consensus       184 rapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~d---~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~  260 (369)
T KOG0665|consen  184 RAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGKD---HIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQA  260 (369)
T ss_pred             cCchheeccCCcccchhhhhhhHHHHHhhceEEecCch---HHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhc
Confidence                     24578999999999999999998776432   22233322222211000     000000           


Q ss_pred             ----hhc-CCcC--CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          539 ----NWM-DPNL--ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       539 ----~~~-dp~l--~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                          +.+ |...  ..+.+.-......+++.+++-.||++|-|.++++.+
T Consensus       261 ~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~H  310 (369)
T KOG0665|consen  261 ISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALRH  310 (369)
T ss_pred             cchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhcC
Confidence                000 0000  011122234457899999999999999999999875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.86  E-value=2e-22  Score=235.57  Aligned_cols=174  Identities=16%  Similarity=0.236  Sum_probs=124.0

Q ss_pred             HhcCC-CCcccEEEEEEc------CCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHH
Q 047629          372 QRINH-ANLVKLMGVSSD------SQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYM  444 (615)
Q Consensus       372 ~~l~H-~niv~l~g~~~~------~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yL  444 (615)
                      +.++| .||+++++++..      .+..+++++||+ .++|.++|.....         .+++.+++.++.||+.||+||
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~~~---------~~~~~~~~~i~~qi~~al~~l   96 (793)
T PLN00181         27 KSLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNPDR---------SVDAFECFHVFRQIVEIVNAA   96 (793)
T ss_pred             chhhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhcccc---------cccHHHHHHHHHHHHHHHHHH
Confidence            34556 688888887621      112467788988 5699999975332         389999999999999999999


Q ss_pred             HhCCCCCeEecCCCCCceeeC-------------------CCCcEEEeecCCCCCC------------------------
Q 047629          445 HEHAQPSIVHRDIRTNNIQLD-------------------SRFKAKIANFSLAAPA------------------------  481 (615)
Q Consensus       445 H~~~~~~ivHrDlk~~NILld-------------------~~~~~kl~DFGla~~~------------------------  481 (615)
                      |+++   |+||||||+||||+                   .++.+|++|||+++..                        
T Consensus        97 H~~g---IvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (793)
T PLN00181         97 HSQG---IVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQI  173 (793)
T ss_pred             HhCC---eeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCccccc
Confidence            9998   99999999999994                   4566788888887531                        


Q ss_pred             ---------------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          482 ---------------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       482 ---------------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                     ...++.++|||||||+||||++|..|+....        ..+...          ......+...
T Consensus       174 ~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~--------~~~~~~----------~~~~~~~~~~  235 (793)
T PLN00181        174 LAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKS--------RTMSSL----------RHRVLPPQIL  235 (793)
T ss_pred             ccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHH--------HHHHHH----------HHhhcChhhh
Confidence                           1124578999999999999999988754211        000000          0001111111


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                           ........++.+||+.+|.+||+|.|++++
T Consensus       236 -----~~~~~~~~~~~~~L~~~P~~Rps~~eil~h  265 (793)
T PLN00181        236 -----LNWPKEASFCLWLLHPEPSCRPSMSELLQS  265 (793)
T ss_pred             -----hcCHHHHHHHHHhCCCChhhCcChHHHhhc
Confidence                 112235678899999999999999999875

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.85  E-value=3.9e-22  Score=206.23  Aligned_cols=197  Identities=22%  Similarity=0.297  Sum_probs=154.5

Q ss_pred             eEEEEEECCeE--EEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          344 SVYRATIDGKV--LAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       344 ~Vy~~~~~g~~--vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      .|-....+++.  +|+|.+++          .+..|-.||...+.+.||+|+.-+.+.+ ..|+.||-|-+|.|...|+.
T Consensus       435 RVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~k-yvYmLmEaClGGElWTiLrd  513 (732)
T KOG0614|consen  435 RVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSK-YVYMLMEACLGGELWTILRD  513 (732)
T ss_pred             eEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccch-hhhhhHHhhcCchhhhhhhh
Confidence            55555555544  78888863          3567999999999999999999887654 78999999999999999987


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC-------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND-------  484 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~-------  484 (615)
                      .+.          ++......++..+..|++|||+++   ||.|||||+|.+||.+|-+||.|||+|+.....       
T Consensus       514 Rg~----------Fdd~tarF~~acv~EAfeYLH~k~---iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~KTwTFc  580 (732)
T KOG0614|consen  514 RGS----------FDDYTARFYVACVLEAFEYLHRKG---IIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGRKTWTFC  580 (732)
T ss_pred             cCC----------cccchhhhhHHHHHHHHHHHHhcC---ceeccCChhheeeccCCceEEeehhhHHHhccCCceeeec
Confidence            653          777777888999999999999998   999999999999999999999999999765322       


Q ss_pred             ---------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          485 ---------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       485 ---------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                     ....+|.||+|++++||++|++||...+.-...      ...+.           -+|   .-.+
T Consensus       581 GTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmktY------n~ILk-----------Gid---~i~~  640 (732)
T KOG0614|consen  581 GTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMKTY------NLILK-----------GID---KIEF  640 (732)
T ss_pred             CCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHHHH------HHHHh-----------hhh---hhhc
Confidence                           234789999999999999999999876642211      11111           011   0124


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCC
Q 047629          550 PIDGALSLATLARACTMDKSLSRPN  574 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPs  574 (615)
                      |........+|++..+..+|.+|--
T Consensus       641 Pr~I~k~a~~Lik~LCr~~P~ERLG  665 (732)
T KOG0614|consen  641 PRRITKTATDLIKKLCRDNPTERLG  665 (732)
T ss_pred             ccccchhHHHHHHHHHhcCcHhhhc
Confidence            5555556788999999999999875

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.84  E-value=1.3e-21  Score=188.32  Aligned_cols=214  Identities=21%  Similarity=0.357  Sum_probs=165.1

Q ss_pred             ceEEEEEECCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |..|+|.|.|..+.+|.++         .+|..|.--|+-+.||||+.++|.|... .++.++..||+.|||+..|++..
T Consensus       204 gelwrgrwqgndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsp-pnlv~isq~mp~gslynvlhe~t  282 (448)
T KOG0195|consen  204 GELWRGRWQGNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSP-PNLVIISQYMPFGSLYNVLHEQT  282 (448)
T ss_pred             cccccccccCcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCC-CCceEeeeeccchHHHHHHhcCc
Confidence            5799999988888778764         5788999999999999999999999755 47899999999999999999765


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEe--ecCCCCCCCC--------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIA--NFSLAAPATN--------  483 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~--DFGla~~~~~--------  483 (615)
                      .        ...+-.|..+++.++|+|++|||+.. |-|..-.|.++.+++|++..++|+  |--++....+        
T Consensus       283 ~--------vvvd~sqav~faldiargmaflhsle-p~ipr~~lns~hvmidedltarismad~kfsfqe~gr~y~pawm  353 (448)
T KOG0195|consen  283 S--------VVVDHSQAVRFALDIARGMAFLHSLE-PMIPRFYLNSKHVMIDEDLTARISMADTKFSFQEVGRAYSPAWM  353 (448)
T ss_pred             c--------EEEecchHHHHHHHHHhhHHHHhhcc-hhhhhhhcccceEEecchhhhheecccceeeeeccccccCcccC
Confidence            3        24788899999999999999999984 545555799999999999988875  3222211111        


Q ss_pred             -----------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChH
Q 047629          484 -----------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPID  552 (615)
Q Consensus       484 -----------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~  552 (615)
                                 .--..+|+|||.++||||.|+..||....+-+--.                    ++.=..|+-..|..
T Consensus       354 spealqrkped~n~raadmwsfaillwel~trevpfadlspmecgm--------------------kialeglrv~ippg  413 (448)
T KOG0195|consen  354 SPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPMECGM--------------------KIALEGLRVHIPPG  413 (448)
T ss_pred             CHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchhhhh--------------------hhhhccccccCCCC
Confidence                       01236899999999999999999997654321110                    00001222334555


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcc
Q 047629          553 GALSLATLARACTMDKSLSRPNMAEVVFNLSVLT  586 (615)
Q Consensus       553 ~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~  586 (615)
                      ....+.+|+.-|+++||.+||.++.|+-.|+++.
T Consensus       414 is~hm~klm~icmnedpgkrpkfdmivpilekm~  447 (448)
T KOG0195|consen  414 ISRHMNKLMNICMNEDPGKRPKFDMIVPILEKMI  447 (448)
T ss_pred             ccHHHHHHHHHHhcCCCCcCCCcceehhhHHHhc
Confidence            5667899999999999999999999999998764

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.84  E-value=1.8e-20  Score=178.12  Aligned_cols=151  Identities=20%  Similarity=0.190  Sum_probs=109.3

Q ss_pred             CCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC
Q 047629          403 GSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT  482 (615)
Q Consensus       403 GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~  482 (615)
                      |+|.+++.....         .++|.+++.|+.|++.||.|||+++         ||+|||++.++.+|+  ||+++...
T Consensus         1 GsL~~~l~~~~~---------~l~~~~~~~i~~qi~~~L~~lH~~~---------kp~Nil~~~~~~~~~--fG~~~~~~   60 (176)
T smart00750        1 VSLADILEVRGR---------PLNEEEIWAVCLQCLRALRELHRQA---------KSGNILLTWDGLLKL--DGSVAFKT   60 (176)
T ss_pred             CcHHHHHHHhCC---------CCCHHHHHHHHHHHHHHHHHHHhcC---------CcccEeEcCccceee--ccceEeec
Confidence            789999976432         3999999999999999999999885         999999999999999  99886431


Q ss_pred             ------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCc
Q 047629          483 ------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPN  544 (615)
Q Consensus       483 ------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~  544 (615)
                                        ..++.++|||||||++|||++|+.|+........ .    +....       ..... .++.
T Consensus        61 ~~~~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~-~----~~~~~-------~~~~~-~~~~  127 (176)
T smart00750       61 PEQSRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELSA-I----LEILL-------NGMPA-DDPR  127 (176)
T ss_pred             cccCCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcH-H----HHHHH-------HHhcc-CCcc
Confidence                              2356789999999999999999999864332111 0    00000       00000 0000


Q ss_pred             CCCCCChHHH--HHHHHHHHHhhhcCCCCCCCHHHHHHHHHhccc
Q 047629          545 LESFYPIDGA--LSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       545 l~~~~~~~~~--~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~  587 (615)
                      - ...+....  ..+.+++.+||+.||.+||++.|+++++..+..
T Consensus       128 ~-~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~~  171 (176)
T smart00750      128 D-RSNLESVSAARSFADFMRVCASRLPQRREAANHYLAHCRALFA  171 (176)
T ss_pred             c-cccHHHHHhhhhHHHHHHHHHhcccccccCHHHHHHHHHHHHH
Confidence            0 01111222  258999999999999999999999999876643

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.84  E-value=5.3e-20  Score=180.75  Aligned_cols=155  Identities=35%  Similarity=0.521  Sum_probs=134.0

Q ss_pred             ceEEEEEE--CCeEEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      +.||++..  +++.+|+|....        .+.+|++.+.+++|+|++++++++... ...++++||+++++|.+++...
T Consensus        13 ~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~-~~~~~v~e~~~~~~L~~~~~~~   91 (225)
T smart00221       13 GKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDP-EPLYLVMEYCEGGDLFDYLRKK   91 (225)
T ss_pred             eEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecC-CceEEEEeccCCCCHHHHHHhc
Confidence            48999998  369999998852        466799999999999999999998754 4789999999999999999764


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC---------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN---------  483 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~---------  483 (615)
                      ..         .+++..+..++.+++.++.|||+++   ++|+||+++||+++.++.++|+|||++.....         
T Consensus        92 ~~---------~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~~~  159 (225)
T smart00221       92 GG---------KLSEEEARFYLRQILEALEYLHSLG---IVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAALLKTV  159 (225)
T ss_pred             cc---------CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEeeCceeeEecCcccccccce
Confidence            32         1789999999999999999999997   99999999999999999999999998754321         


Q ss_pred             ----------------CCCCcccchhHHHHHHHHHcCCCCCCC
Q 047629          484 ----------------DVMPKFDVFAFGVVLLELLSGKKATRT  510 (615)
Q Consensus       484 ----------------~~~~k~DV~SfGvvl~ElltG~~p~~~  510 (615)
                                      ..+.++|||+||++++||++|+.||..
T Consensus       160 ~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      160 KGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             eccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence                            123579999999999999999999965

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.83  E-value=4.6e-21  Score=184.87  Aligned_cols=203  Identities=17%  Similarity=0.277  Sum_probs=144.9

Q ss_pred             CCeEEEEEEcc------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCccc
Q 047629          351 DGKVLAVKKIK------EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVI  423 (615)
Q Consensus       351 ~g~~vAvK~~~------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~  423 (615)
                      ..+.+++|.+.      .+|.+|..---.| .|.||+.-+....+..+..++++||+|.|+|..-+...+          
T Consensus        48 s~t~ivlKavp~p~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE~aP~gdL~snv~~~G----------  117 (378)
T KOG1345|consen   48 SKTRIVLKAVPRPQTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQEFAPRGDLRSNVEAAG----------  117 (378)
T ss_pred             CceEEEeeccCcchhhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeeccCccchhhhhcCccc----------
Confidence            45789999885      4677777654444 699999887776666667889999999999998876532          


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeC--CCCcEEEeecCCCCCCCCC-----------------
Q 047629          424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD--SRFKAKIANFSLAAPATND-----------------  484 (615)
Q Consensus       424 ~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld--~~~~~kl~DFGla~~~~~~-----------------  484 (615)
                       +.+....+++.|++.|++|+|++.   +||||||.+|||+-  +..++||+|||+++..+..                 
T Consensus       118 -igE~~~K~v~~ql~SAi~fMHskn---lVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~tV~~~~~~~~y~~pe~~~  193 (378)
T KOG1345|consen  118 -IGEANTKKVFAQLLSAIEFMHSKN---LVHRDLKAENILIFDADFYRVKLCDFGLTRKVGTTVKYLEYVNNYHAPELCD  193 (378)
T ss_pred             -ccHHHHHHHHHHHHHHHHHhhccc---hhhcccccceEEEecCCccEEEeeecccccccCceehhhhhhcccCCcHHHh
Confidence             778888999999999999999998   99999999999993  3458999999998764211                 


Q ss_pred             --------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHH
Q 047629          485 --------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALS  556 (615)
Q Consensus       485 --------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~  556 (615)
                              ..+.+|||.||++++.++||+.|+....-. ....|.|...            .+-..+++...+.. ...+
T Consensus       194 ~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~-d~~Y~~~~~w------------~~rk~~~~P~~F~~-fs~~  259 (378)
T KOG1345|consen  194 TVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIM-DKPYWEWEQW------------LKRKNPALPKKFNP-FSEK  259 (378)
T ss_pred             hccccceEecccccchheeeeeeeeecCCCcchhhhcc-CchHHHHHHH------------hcccCccCchhhcc-cCHH
Confidence                    246789999999999999999999843211 1122332211            11112222222211 1234


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          557 LATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       557 l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +.++-++-+.++|++|-...++-++
T Consensus       260 a~r~Fkk~lt~~~~drcki~~~kk~  284 (378)
T KOG1345|consen  260 ALRLFKKSLTPRFKDRCKIWTAKKM  284 (378)
T ss_pred             HHHHHHHhcCCcccccchhHHHHHH
Confidence            5677788888899888555554443

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.83  E-value=1.4e-19  Score=187.01  Aligned_cols=117  Identities=24%  Similarity=0.384  Sum_probs=95.7

Q ss_pred             cccccc----ceEEEEEE--CCeEEEEEEccH------HHHHHHHHHHhcC-----C---CCcccEEEEEEcCC---CcE
Q 047629          337 EHYSIG----KSVYRATI--DGKVLAVKKIKE------DVTEELRILQRIN-----H---ANLVKLMGVSSDSQ---GNR  393 (615)
Q Consensus       337 ~~~~iG----~~Vy~~~~--~g~~vAvK~~~~------~~~~Ei~~l~~l~-----H---~niv~l~g~~~~~~---~~~  393 (615)
                      ...++|    .+||.+..  +.+.||+|+.+.      ....||++|++++     |   .+||+|++.|....   .+.
T Consensus        82 v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpNG~HV  161 (590)
T KOG1290|consen   82 VQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPNGQHV  161 (590)
T ss_pred             EEEeccccccceeEEEeeccCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCCCcEE
Confidence            344566    38998876  578999999983      3668999999983     3   36999999986432   247


Q ss_pred             EEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceee
Q 047629          394 FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL  464 (615)
Q Consensus       394 ~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl  464 (615)
                      ++|+|+. +-+|..++......        .++...+.+|+.||+.||.|||.++  .|||-||||+|||+
T Consensus       162 CMVfEvL-GdnLLklI~~s~Yr--------Glpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlKPENvLl  221 (590)
T KOG1290|consen  162 CMVFEVL-GDNLLKLIKYSNYR--------GLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLKPENVLL  221 (590)
T ss_pred             EEEehhh-hhHHHHHHHHhCCC--------CCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCCcceeee
Confidence            9999999 45899999876543        3899999999999999999999998  69999999999999

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.83  E-value=1.1e-20  Score=195.97  Aligned_cols=249  Identities=20%  Similarity=0.253  Sum_probs=173.1

Q ss_pred             eeeeHHHHHHHccccccccccc--ceEEEEEE--CCeEEEEEEccH------HHHHHHHHHHhcC------CCCcccEEE
Q 047629          321 IVYEIEVIMESTMNLSEHYSIG--KSVYRATI--DGKVLAVKKIKE------DVTEELRILQRIN------HANLVKLMG  384 (615)
Q Consensus       321 ~~~~~~~l~~at~~~~~~~~iG--~~Vy~~~~--~g~~vAvK~~~~------~~~~Ei~~l~~l~------H~niv~l~g  384 (615)
                      -.+.+.|+...........+-|  +.|-+|..  .|+.||||+++.      .-..|++||++|+      -.|+++|+-
T Consensus       422 Yrv~igE~LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r  501 (752)
T KOG0670|consen  422 YRVRIGELLDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDADPEDKFHCLRLFR  501 (752)
T ss_pred             EEEehhhhhcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhccCchhhhHHHHHHH
Confidence            3445666665544433332323  24445554  578999999973      2357999999995      347888888


Q ss_pred             EEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceee
Q 047629          385 VSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL  464 (615)
Q Consensus       385 ~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl  464 (615)
                      .|... .++|||+|-+. -+|.+.|+.-+..       ..|....+..++.|+..+|.+|-..+   |+|.||||.|||+
T Consensus       502 ~F~hk-nHLClVFE~Ls-lNLRevLKKyG~n-------vGL~ikaVRsYaqQLflALklLK~c~---vlHaDIKPDNiLV  569 (752)
T KOG0670|consen  502 HFKHK-NHLCLVFEPLS-LNLREVLKKYGRN-------VGLHIKAVRSYAQQLFLALKLLKKCG---VLHADIKPDNILV  569 (752)
T ss_pred             Hhhhc-ceeEEEehhhh-chHHHHHHHhCcc-------cceeehHHHHHHHHHHHHHHHHHhcC---eeecccCccceEe
Confidence            76644 48999999885 4899999875542       34888999999999999999999988   9999999999999


Q ss_pred             CCC-CcEEEeecCCCCCCCC---------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHH
Q 047629          465 DSR-FKAKIANFSLAAPATN---------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKE  522 (615)
Q Consensus       465 d~~-~~~kl~DFGla~~~~~---------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~  522 (615)
                      ++. ...||||||.|.....                     .+....|+||.||.||||.||+--|.+..+...+-+.-.
T Consensus       570 NE~k~iLKLCDfGSA~~~~eneitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN~MLrl~me  649 (752)
T KOG0670|consen  570 NESKNILKLCDFGSASFASENEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTNNQMLRLFME  649 (752)
T ss_pred             ccCcceeeeccCccccccccccccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCCcHHHHHHHHH
Confidence            986 5679999999855422                     245578999999999999999999988776555444322


Q ss_pred             HHHHHhHHHHHHHH-HhhhcC--------------------------C------cCC--CCCChH---HHHHHHHHHHHh
Q 047629          523 IREVLKVEEKREER-LRNWMD--------------------------P------NLE--SFYPID---GALSLATLARAC  564 (615)
Q Consensus       523 ~~~~~~~~~~~~~~-~~~~~d--------------------------p------~l~--~~~~~~---~~~~l~~l~~~C  564 (615)
                      +...+...-.+.+. ....+|                          |      .|.  ..++.+   ....+.+|...|
T Consensus       650 ~KGk~p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdLLdkm  729 (752)
T KOG0670|consen  650 LKGKFPNKMLRKGQFKDQHFDQDLNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRDLLDKM  729 (752)
T ss_pred             hcCCCcHHHhhhcchhhhhcccccceEEEeccccccceeEEEecccCcchhHHHHHhccCCCCchhHHHHHHHHHHHHHH
Confidence            22111111000000 011111                          1      011  123443   345688999999


Q ss_pred             hhcCCCCCCCHHHHHHH
Q 047629          565 TMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       565 ~~~dP~~RPsm~ev~~~  581 (615)
                      +..||++|-|..|.+.+
T Consensus       730 l~LdP~KRit~nqAL~H  746 (752)
T KOG0670|consen  730 LILDPEKRITVNQALKH  746 (752)
T ss_pred             hccChhhcCCHHHHhcC
Confidence            99999999999988764

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.82  E-value=5.3e-20  Score=181.75  Aligned_cols=193  Identities=19%  Similarity=0.342  Sum_probs=145.8

Q ss_pred             CCeEEEEEEccHHH----------HHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCC
Q 047629          351 DGKVLAVKKIKEDV----------TEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSS  419 (615)
Q Consensus       351 ~g~~vAvK~~~~~~----------~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~  419 (615)
                      +.+.+|+|++++++          ..|-.+..+. +||.+|-|..++. .+..+++|.||+++|+|.-++.+.++     
T Consensus       274 t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfq-tesrlffvieyv~ggdlmfhmqrqrk-----  347 (593)
T KOG0695|consen  274 TDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQ-TESRLFFVIEYVNGGDLMFHMQRQRK-----  347 (593)
T ss_pred             cceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhc-ccceEEEEEEEecCcceeeehhhhhc-----
Confidence            56889999998753          3466666665 8999999987654 45579999999999999888776654     


Q ss_pred             CcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------------
Q 047629          420 GSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------------  482 (615)
Q Consensus       420 ~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------------  482 (615)
                           |++.....+...|..+|.|||+++   ||.||||..|+|+|..+.+|++|+|+.+..-                 
T Consensus       348 -----lpeeharfys~ei~lal~flh~rg---iiyrdlkldnvlldaeghikltdygmcke~l~~gd~tstfcgtpnyia  419 (593)
T KOG0695|consen  348 -----LPEEHARFYSAEICLALNFLHERG---IIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIA  419 (593)
T ss_pred             -----CcHHHhhhhhHHHHHHHHHHhhcC---eeeeeccccceEEccCCceeecccchhhcCCCCCcccccccCCCcccc
Confidence                 889999999999999999999999   9999999999999999999999999986421                 


Q ss_pred             ------CCCCCcccchhHHHHHHHHHcCCCCCCCCC--CChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHH
Q 047629          483 ------NDVMPKFDVFAFGVVLLELLSGKKATRTTE--NGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGA  554 (615)
Q Consensus       483 ------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~  554 (615)
                            ..+.-.+|.|++||+++||+.|+.||+-..  +.+... -+.+.+++         +.+    .+  ..|....
T Consensus       420 peilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~nt-edylfqvi---------lek----qi--riprsls  483 (593)
T KOG0695|consen  420 PEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNT-EDYLFQVI---------LEK----QI--RIPRSLS  483 (593)
T ss_pred             hhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccch-hHHHHHHH---------hhh----cc--cccceee
Confidence                  124457899999999999999999997532  111110 01111111         111    11  1344444


Q ss_pred             HHHHHHHHHhhhcCCCCCC
Q 047629          555 LSLATLARACTMDKSLSRP  573 (615)
Q Consensus       555 ~~l~~l~~~C~~~dP~~RP  573 (615)
                      .+...+.+.-++.||.+|-
T Consensus       484 vkas~vlkgflnkdp~erl  502 (593)
T KOG0695|consen  484 VKASHVLKGFLNKDPKERL  502 (593)
T ss_pred             hhhHHHHHHhhcCCcHHhc
Confidence            5567888999999999885

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.81  E-value=5.6e-20  Score=193.08  Aligned_cols=153  Identities=25%  Similarity=0.369  Sum_probs=129.5

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH---------------HHHHHHHHHhcC---CCCcccEEEEEEcCCCcEEEEEeecC-
Q 047629          343 KSVYRATI--DGKVLAVKKIKED---------------VTEELRILQRIN---HANLVKLMGVSSDSQGNRFLVYEYAE-  401 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~---------------~~~Ei~~l~~l~---H~niv~l~g~~~~~~~~~~lV~E~~~-  401 (615)
                      |.|+.++.  +...|.||.+.++               +..||.||..++   |+||+|+++++.+ ++..||++|-.. 
T Consensus       575 GkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEd-dd~yyl~te~hg~  653 (772)
T KOG1152|consen  575 GKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFED-DDYYYLETEVHGE  653 (772)
T ss_pred             ceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeec-CCeeEEEecCCCC
Confidence            56777776  5678999988643               346999999997   9999999999875 458999999764 


Q ss_pred             CCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC
Q 047629          402 NGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA  481 (615)
Q Consensus       402 ~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  481 (615)
                      +-+|.+++..+..          +++....-|..||+.|+++||+++   |||||||-+|+.+|.+|-+||.|||.|...
T Consensus       654 gIDLFd~IE~kp~----------m~E~eAk~IFkQV~agi~hlh~~~---ivhrdikdenvivd~~g~~klidfgsaa~~  720 (772)
T KOG1152|consen  654 GIDLFDFIEFKPR----------MDEPEAKLIFKQVVAGIKHLHDQG---IVHRDIKDENVIVDSNGFVKLIDFGSAAYT  720 (772)
T ss_pred             CcchhhhhhccCc----------cchHHHHHHHHHHHhccccccccC---ceecccccccEEEecCCeEEEeeccchhhh
Confidence            4589999976543          899999999999999999999998   999999999999999999999999988654


Q ss_pred             CCC----------------------CCCcccchhHHHHHHHHHcCCCCCC
Q 047629          482 TND----------------------VMPKFDVFAFGVVLLELLSGKKATR  509 (615)
Q Consensus       482 ~~~----------------------~~~k~DV~SfGvvl~ElltG~~p~~  509 (615)
                      ...                      ....-|||++|++||.++....|+.
T Consensus       721 ksgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  721 KSGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             cCCCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence            221                      2346799999999999998888875

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.79  E-value=4e-19  Score=190.20  Aligned_cols=194  Identities=23%  Similarity=0.384  Sum_probs=149.5

Q ss_pred             HHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCC
Q 047629          371 LQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQP  450 (615)
Q Consensus       371 l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~  450 (615)
                      |+.+.|.|+.+++|.+.+. +..+.|.+|+..|+|.+.+.....         .++|.....+.++++.||+|||+..  
T Consensus         1 l~~l~h~n~~~f~g~~~~~-~~~~~i~~~c~rGsl~D~i~~~~~---------~~d~~F~~s~~rdi~~Gl~ylh~s~--   68 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDG-PEMIVIWEYCSRGSLLDILSNEDI---------KLDYFFILSFIRDISKGLAYLHNSP--   68 (484)
T ss_pred             CcccchhhhhhheeeEecC-CceEEEEeeecCccHHhHHhcccc---------CccHHHHHHHHHHHHHHHHHHhcCc--
Confidence            4568999999999999976 578999999999999999987443         4999999999999999999999753  


Q ss_pred             CeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--------------------------------CCCCcccchhHHHHH
Q 047629          451 SIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--------------------------------DVMPKFDVFAFGVVL  498 (615)
Q Consensus       451 ~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--------------------------------~~~~k~DV~SfGvvl  498 (615)
                      -..|+.++++|+++|..+.+|++|||+......                                ..+.+.||||||+++
T Consensus        69 i~~hg~l~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~  148 (484)
T KOG1023|consen   69 IGYHGALKSSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIM  148 (484)
T ss_pred             ceeeeeeccccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHH
Confidence            349999999999999999999999999765521                                035679999999999


Q ss_pred             HHHHcCCCCCCCCCCChhH-HHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHH
Q 047629          499 LELLSGKKATRTTENGKTA-VLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAE  577 (615)
Q Consensus       499 ~ElltG~~p~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~e  577 (615)
                      +|+++.+.||+........ .....+.          ........|.+....  +....+..++..||.++|++||++++
T Consensus       149 ~ei~~r~~~~~~~~~~~~~~eii~~~~----------~~~~~~~rP~i~~~~--e~~~~l~~l~~~cw~e~P~~rPs~~~  216 (484)
T KOG1023|consen  149 YEILFRSGPFDLRNLVEDPDEIILRVK----------KGGSNPFRPSIELLN--ELPPELLLLVARCWEEIPEKRPSIEQ  216 (484)
T ss_pred             HHHHhccCccccccccCChHHHHHHHH----------hcCCCCcCcchhhhh--hcchHHHHHHHHhcccChhhCccHHH
Confidence            9999999999874432221 1111111          011222333332111  33336899999999999999999999


Q ss_pred             HHHHHHhcccc
Q 047629          578 VVFNLSVLTQS  588 (615)
Q Consensus       578 v~~~L~~l~~~  588 (615)
                      |-..++.+...
T Consensus       217 i~~~~~~~~~~  227 (484)
T KOG1023|consen  217 IRSKLLTINKG  227 (484)
T ss_pred             HHhhhhhhccc
Confidence            99988876653

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.78  E-value=8.5e-20  Score=194.62  Aligned_cols=207  Identities=24%  Similarity=0.366  Sum_probs=160.6

Q ss_pred             ceEEEEEE--CCeEEEEEEccH-------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE-------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~-------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.|||++.  .|+..|||.++-       -...|+-+++.-+|+|||.++|-+...+ .+|+.||||.+|+|++.-+...
T Consensus        29 gdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~d-klwicMEycgggslQdiy~~Tg  107 (829)
T KOG0576|consen   29 GDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRD-KLWICMEYCGGGSLQDIYHVTG  107 (829)
T ss_pred             cchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhc-CcEEEEEecCCCcccceeeecc
Confidence            57999887  789999999983       2567999999999999999999887544 7999999999999999776544


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                                +|++.++..+++...+||+|||+.+   =+|||||-.|||+.+.+.+|++|||.+...+           
T Consensus       108 ----------plselqiayvcRetl~gl~ylhs~g---k~hRdiKGanilltd~gDvklaDfgvsaqitati~KrksfiG  174 (829)
T KOG0576|consen  108 ----------PLSELQIAYVCRETLQGLKYLHSQG---KIHRDIKGANILLTDEGDVKLADFGVSAQITATIAKRKSFIG  174 (829)
T ss_pred             ----------cchhHHHHHHHhhhhccchhhhcCC---cccccccccceeecccCceeecccCchhhhhhhhhhhhcccC
Confidence                      3899999999999999999999998   7899999999999999999999999875432           


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ..+..++|||+.|+.-.|+-.-+.|...........+       +.        -...-.|.+++
T Consensus       175 tpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlhpmr~l~L-------mT--------kS~~qpp~lkD  239 (829)
T KOG0576|consen  175 TPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLHPMRALFL-------MT--------KSGFQPPTLKD  239 (829)
T ss_pred             CccccchhHHHHHhcccccccccccccccchhhhhhcCCcccccchHHHHHH-------hh--------ccCCCCCcccC
Confidence                           1255689999999999999877777543322111100       00        01111223322


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                        +..-...+-++++.|+-.+|++||++..++.
T Consensus       240 --k~kws~~fh~fvK~altknpKkRptaeklL~  270 (829)
T KOG0576|consen  240 --KTKWSEFFHNFVKGALTKNPKKRPTAEKLLQ  270 (829)
T ss_pred             --CccchHHHHHHHHHHhcCCCccCCChhhhee
Confidence              2233345789999999999999999987665

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.77  E-value=1e-18  Score=178.57  Aligned_cols=232  Identities=24%  Similarity=0.326  Sum_probs=163.8

Q ss_pred             cccccccccc----ceEEEEEE-----CCeEEEEEEcc-----HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEE
Q 047629          333 MNLSEHYSIG----KSVYRATI-----DGKVLAVKKIK-----EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVY  397 (615)
Q Consensus       333 ~~~~~~~~iG----~~Vy~~~~-----~g~~vAvK~~~-----~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~  397 (615)
                      +.+...+++|    ++||+++.     ..+.||+|.+.     ..+.+|+++|..+ -+.||+++.++... ++...+|+
T Consensus        36 ~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~p~ri~~El~~L~~~gG~~ni~~~~~~~rn-nd~v~ivl  114 (418)
T KOG1167|consen   36 NAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSSPSRILNELEMLYRLGGSDNIIKLNGCFRN-NDQVAIVL  114 (418)
T ss_pred             hhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccCchHHHHHHHHHHHhccchhhhcchhhhcc-CCeeEEEe
Confidence            4455555666    37888876     35789999986     4578999999999 59999999997654 45899999


Q ss_pred             eecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC-CcEEEeecC
Q 047629          398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR-FKAKIANFS  476 (615)
Q Consensus       398 E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-~~~kl~DFG  476 (615)
                      ||++.-...++...             ++..++..++..+..||.++|.++   ||||||||+|+|.+.. .+-.|.|||
T Consensus       115 p~~~H~~f~~l~~~-------------l~~~~i~~Yl~~ll~Al~~~h~~G---IvHRDiKpsNFL~n~~t~rg~LvDFg  178 (418)
T KOG1167|consen  115 PYFEHDRFRDLYRS-------------LSLAEIRWYLRNLLKALAHLHKNG---IVHRDIKPSNFLYNRRTQRGVLVDFG  178 (418)
T ss_pred             cccCccCHHHHHhc-------------CCHHHHHHHHHHHHHHhhhhhccC---ccccCCCccccccccccCCceEEech
Confidence            99999998888763             778889999999999999999998   9999999999999876 678999999


Q ss_pred             CCCCC-----------------CC---------------------------------------------------CCCCc
Q 047629          477 LAAPA-----------------TN---------------------------------------------------DVMPK  488 (615)
Q Consensus       477 la~~~-----------------~~---------------------------------------------------~~~~k  488 (615)
                      ||...                 ..                                                   .-+++
T Consensus       179 LA~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~Qtta  258 (418)
T KOG1167|consen  179 LAQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTA  258 (418)
T ss_pred             hHHHHHhhhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCc
Confidence            98410                 00                                                   02457


Q ss_pred             ccchhHHHHHHHHHcCCCCCCCCCCChhH--HH-----HHHHHHHHhHHHH-----------HHHHHhhh--cC-CcC-C
Q 047629          489 FDVFAFGVVLLELLSGKKATRTTENGKTA--VL-----WKEIREVLKVEEK-----------REERLRNW--MD-PNL-E  546 (615)
Q Consensus       489 ~DV~SfGvvl~ElltG~~p~~~~~~~~~~--~l-----~~~~~~~~~~~~~-----------~~~~~~~~--~d-p~l-~  546 (615)
                      +||||-||+++-+++++.||....++-..  .+     +..++..-...+.           ..+....+  ++ ..+ .
T Consensus       259 iDiws~GVI~Lslls~~~PFf~a~dd~~al~ei~tifG~~~mrk~A~l~g~~~l~~ksn~~~~~e~~~~f~s~~~~~~~~  338 (418)
T KOG1167|consen  259 IDIWSAGVILLSLLSRRYPFFKAKDDADALAEIATIFGSAEMRKCAALPGRILLWQKSNIPTIPELRVNFETLHIESIYK  338 (418)
T ss_pred             cceeeccceeehhhccccccccCccccchHHHHHHHhChHHHHHHhhcCCceeeeccccccccHHHHhchhccChhhccc
Confidence            99999999999999999999765433211  10     0111111000000           00000000  10 000 0


Q ss_pred             CCC-------ChH-HHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          547 SFY-------PID-GALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       547 ~~~-------~~~-~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+.       ..+ ....+++|..+|++.||.+|-|++|.+++
T Consensus       339 ~~q~n~~~~~~~d~~~~~~~dlLdk~le~np~kRitAEeALkH  381 (418)
T KOG1167|consen  339 SRQPNTEREIGSDVFPALLLDLLDKCLELNPQKRITAEDALKH  381 (418)
T ss_pred             ccccceeeccccccccHHHHHHHHHHccCChhhcccHHHHhcC
Confidence            011       111 22367899999999999999999999875

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.70  E-value=1.5e-16  Score=167.44  Aligned_cols=115  Identities=22%  Similarity=0.267  Sum_probs=93.0

Q ss_pred             ceEEEEEE---CCeEEEEEEcc------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI---DGKVLAVKKIK------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~---~g~~vAvK~~~------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||+|..   +|+.+|||++.            ..+.+|+++|++++|+|++..+..+    +..++||||+++++|..
T Consensus        32 g~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~----~~~~LVmE~~~G~~L~~  107 (365)
T PRK09188         32 STVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT----GKDGLVRGWTEGVPLHL  107 (365)
T ss_pred             EEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc----CCcEEEEEccCCCCHHH
Confidence            58999986   57888999852            2378999999999999999643221    35799999999999963


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCC-CCCceeeCCCCcEEEeecCCCCCC
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI-RTNNIQLDSRFKAKIANFSLAAPA  481 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDl-k~~NILld~~~~~kl~DFGla~~~  481 (615)
                      . ..             ..   ...++.+++.+|.|||+++   |+|||| ||+|||++.++++||+|||+|+..
T Consensus       108 ~-~~-------------~~---~~~~~~~i~~aL~~lH~~g---IiHrDL~KP~NILv~~~~~ikLiDFGlA~~~  162 (365)
T PRK09188        108 A-RP-------------HG---DPAWFRSAHRALRDLHRAG---ITHNDLAKPQNWLMGPDGEAAVIDFQLASVF  162 (365)
T ss_pred             h-Cc-------------cc---hHHHHHHHHHHHHHHHHCC---CeeCCCCCcceEEEcCCCCEEEEECccceec
Confidence            2 11             11   1356789999999999998   999999 999999999999999999999754

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.68  E-value=1.9e-16  Score=152.78  Aligned_cols=122  Identities=22%  Similarity=0.244  Sum_probs=95.7

Q ss_pred             ceEEEEEE-CCeEEEEEEccHH----------------H-----------------HHHHHHHHhcCCCCcccEEEEEEc
Q 047629          343 KSVYRATI-DGKVLAVKKIKED----------------V-----------------TEELRILQRINHANLVKLMGVSSD  388 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~~~----------------~-----------------~~Ei~~l~~l~H~niv~l~g~~~~  388 (615)
                      +.||+|.. +|+.||||+++.+                |                 ..|++.+.++.|+++.....+.. 
T Consensus        11 ~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v~~p~~~~~-   89 (190)
T cd05147          11 ANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGIPCPEPILL-   89 (190)
T ss_pred             eEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCcEEEe-
Confidence            48999987 7999999998532                1                 23999999998887744333322 


Q ss_pred             CCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHH-HhCCCCCeEecCCCCCceeeCCC
Q 047629          389 SQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYM-HEHAQPSIVHRDIRTNNIQLDSR  467 (615)
Q Consensus       389 ~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yL-H~~~~~~ivHrDlk~~NILld~~  467 (615)
                      .  ..+|||||++++++........          .+++.+..+++.|++.+|.|+ |+.+   |+||||||+|||++ +
T Consensus        90 ~--~~~iVmE~i~g~~l~~~~~~~~----------~~~~~~~~~i~~qi~~~L~~l~H~~g---iiHrDlkP~NIli~-~  153 (190)
T cd05147          90 K--SHVLVMEFIGDDGWAAPRLKDA----------PLSESKARELYLQVIQIMRILYQDCR---LVHADLSEYNLLYH-D  153 (190)
T ss_pred             c--CCEEEEEEeCCCCCcchhhhcC----------CCCHHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEE-C
Confidence            2  2489999999887765432221          388999999999999999999 6777   99999999999998 4


Q ss_pred             CcEEEeecCCCCCC
Q 047629          468 FKAKIANFSLAAPA  481 (615)
Q Consensus       468 ~~~kl~DFGla~~~  481 (615)
                      +.++|.|||+|...
T Consensus       154 ~~v~LiDFG~a~~~  167 (190)
T cd05147         154 GKLYIIDVSQSVEH  167 (190)
T ss_pred             CcEEEEEccccccC
Confidence            78999999998754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.67  E-value=7.5e-16  Score=148.88  Aligned_cols=123  Identities=24%  Similarity=0.258  Sum_probs=98.6

Q ss_pred             ceEEEEEE-CCeEEEEEEccHH---------------------------------HHHHHHHHHhcCCCCcccEEEEEEc
Q 047629          343 KSVYRATI-DGKVLAVKKIKED---------------------------------VTEELRILQRINHANLVKLMGVSSD  388 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~~~---------------------------------~~~Ei~~l~~l~H~niv~l~g~~~~  388 (615)
                      +.||+|.. +|+.||||.++..                                 +..|.+.+.++.|+++.....+...
T Consensus        11 ~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~   90 (190)
T cd05145          11 ANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGVPVPEPILLK   90 (190)
T ss_pred             cEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEec
Confidence            48999987 6999999987631                                 1368899999999988655544332


Q ss_pred             CCCcEEEEEeecCCCCHHHh-hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHh-CCCCCeEecCCCCCceeeCC
Q 047629          389 SQGNRFLVYEYAENGSLDKW-LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE-HAQPSIVHRDIRTNNIQLDS  466 (615)
Q Consensus       389 ~~~~~~lV~E~~~~GsL~~~-L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~ivHrDlk~~NILld~  466 (615)
                         ..+|||||++++++... +.. .          .++..+..+++.+++.++.++|+ .+   |+||||||+|||++ 
T Consensus        91 ---~~~lVmE~~~g~~~~~~~l~~-~----------~~~~~~~~~i~~~l~~~l~~lH~~~g---ivHrDlkP~NIll~-  152 (190)
T cd05145          91 ---KNVLVMEFIGDDGSPAPRLKD-V----------PLEEEEAEELYEQVVEQMRRLYQEAG---LVHGDLSEYNILYH-  152 (190)
T ss_pred             ---CCEEEEEEecCCCchhhhhhh-c----------cCCHHHHHHHHHHHHHHHHHHHHhCC---EecCCCChhhEEEE-
Confidence               24899999998855433 322 1          26778899999999999999999 87   99999999999999 


Q ss_pred             CCcEEEeecCCCCCCCC
Q 047629          467 RFKAKIANFSLAAPATN  483 (615)
Q Consensus       467 ~~~~kl~DFGla~~~~~  483 (615)
                      ++.++|+|||+++....
T Consensus       153 ~~~~~liDFG~a~~~~~  169 (190)
T cd05145         153 DGKPYIIDVSQAVELDH  169 (190)
T ss_pred             CCCEEEEEcccceecCC
Confidence            78999999999887654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.65  E-value=9.6e-16  Score=150.45  Aligned_cols=137  Identities=16%  Similarity=0.155  Sum_probs=109.2

Q ss_pred             ceEEEEEECCeEEEEEEccH------H----------HHHHHHHHHhcCCCCcccEEEEEEcC-------CCcEEEEEee
Q 047629          343 KSVYRATIDGKVLAVKKIKE------D----------VTEELRILQRINHANLVKLMGVSSDS-------QGNRFLVYEY  399 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~~------~----------~~~Ei~~l~~l~H~niv~l~g~~~~~-------~~~~~lV~E~  399 (615)
                      +.||....++..+|||.++.      .          +.+|+..+.+++|++|.....+....       .+..+|||||
T Consensus        45 ~~v~l~~~~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~~~~~~~~~~~~lvmEy  124 (232)
T PRK10359         45 TKVSLIDTDYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAERKTLRYAHTYIMLIEY  124 (232)
T ss_pred             eEEEEEecCCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeecccccccccCCeEEEEEE
Confidence            47888666778899999862      1          46889999999999999998875532       2357899999


Q ss_pred             cCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCC
Q 047629          400 AENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA  479 (615)
Q Consensus       400 ~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~  479 (615)
                      +++.+|.++..              ++.    ....+++.+|..+|+.+   ++|||+||+||+++.++ +++.|||..+
T Consensus       125 i~G~tL~~~~~--------------~~~----~~~~~i~~~l~~lH~~g---i~H~Dikp~Nili~~~g-i~liDfg~~~  182 (232)
T PRK10359        125 IEGVELNDMPE--------------ISE----DVKAKIKASIESLHQHG---MVSGDPHKGNFIVSKNG-LRIIDLSGKR  182 (232)
T ss_pred             ECCccHHHhhh--------------ccH----HHHHHHHHHHHHHHHcC---CccCCCChHHEEEeCCC-EEEEECCCcc
Confidence            99999988732              222    23558899999999998   99999999999999988 9999999886


Q ss_pred             CCCC-----------CCCCcccchhHHHHHHHH
Q 047629          480 PATN-----------DVMPKFDVFAFGVVLLEL  501 (615)
Q Consensus       480 ~~~~-----------~~~~k~DV~SfGvvl~El  501 (615)
                      ....           .+..++|+||||+.+.-+
T Consensus       183 ~~~e~~a~d~~vler~y~~~~di~~lg~~~~~~  215 (232)
T PRK10359        183 CTAQRKAKDRIDLERHYGIKNEIKDLGYYLLIY  215 (232)
T ss_pred             cccchhhHHHHHHHhHhcccccccceeEeehHH
Confidence            5422           234689999999987643

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.61  E-value=5.9e-14  Score=143.77  Aligned_cols=217  Identities=28%  Similarity=0.381  Sum_probs=156.6

Q ss_pred             ceEEEEEECCeEEEEEEccH----------HHHHHHHHHHhcCCC-CcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATIDGKVLAVKKIKE----------DVTEELRILQRINHA-NLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~-niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||++... ..+++|.+..          .+.+|+.++..+.|+ +++++.+.+.. .+..+++++++.++++.+++..
T Consensus        14 ~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~   91 (384)
T COG0515          14 GEVYLARDR-KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQD-EGSLYLVMEYVDGGSLEDLLKK   91 (384)
T ss_pred             eEEEEEEec-cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEec-CCEEEEEEecCCCCcHHHHHHh
Confidence            478888776 7788888752          367899999999988 79999998853 3357999999999999977765


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC-cEEEeecCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF-KAKIANFSLAAPAT--------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-~~kl~DFGla~~~~--------  482 (615)
                      ....       ..+.......+..+++.++.|+|+.+   ++|||+||+||+++... .+++.|||+++...        
T Consensus        92 ~~~~-------~~~~~~~~~~~~~~~~~~l~~~H~~~---~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~  161 (384)
T COG0515          92 IGRK-------GPLSESEALFILAQILSALEYLHSKG---IIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSI  161 (384)
T ss_pred             cccc-------cCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeeecCCCCeEEEeccCcceecCCCCccccc
Confidence            4311       13788899999999999999999998   99999999999999998 79999999875221        


Q ss_pred             ------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCC-hhHHHHHHHHHHHhHHHHHHHHH
Q 047629          483 ------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENG-KTAVLWKEIREVLKVEEKREERL  537 (615)
Q Consensus       483 ------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~  537 (615)
                                              .......|+||+|++++++++|+.|+...... .....+..+...          .
T Consensus       162 ~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----------~  231 (384)
T COG0515         162 PALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILEL----------P  231 (384)
T ss_pred             cccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHHhc----------C
Confidence                                    12344689999999999999999996544321 011111111100          0


Q ss_pred             hhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          538 RNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       538 ~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .....+.............+.+++..|+..+|..|.++.+....
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  275 (384)
T COG0515         232 TPSLASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSH  275 (384)
T ss_pred             CcccccccCccccchhhHHHHHHHHHHHhcCchhcCCHHHHhhc
Confidence            00001111111111223467899999999999999999887764

>PRK10345 hypothetical protein; Provisional

Probab=99.59  E-value=1.1e-14  Score=142.24  Aligned_cols=119  Identities=12%  Similarity=0.260  Sum_probs=90.4

Q ss_pred             ceEEEEEECCeEEEEEEcc-------HHHHHHHHHHHhc-----CCCCcccEEEEEEcCCC--cEE-EEEee--cCCCCH
Q 047629          343 KSVYRATIDGKVLAVKKIK-------EDVTEELRILQRI-----NHANLVKLMGVSSDSQG--NRF-LVYEY--AENGSL  405 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~-------~~~~~Ei~~l~~l-----~H~niv~l~g~~~~~~~--~~~-lV~E~--~~~GsL  405 (615)
                      +.||....++.. +||++.       +++.+|+.+++++     .||||++++|++.+..+  ..+ +|+||  +++|+|
T Consensus        16 ~~Vy~hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~I~e~~G~~~~tL   94 (210)
T PRK10345         16 RKCYAHPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDVIADFDGKPSITL   94 (210)
T ss_pred             eEEEECCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEEEecCCCCcchhH
Confidence            367752224444 688765       3578999999999     57999999999876543  333 78999  668999


Q ss_pred             HHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHH-HHHHhCCCCCeEecCCCCCceeeCC----CCcEEEeecCCC
Q 047629          406 DKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGL-QYMHEHAQPSIVHRDIRTNNIQLDS----RFKAKIANFSLA  478 (615)
Q Consensus       406 ~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL-~yLH~~~~~~ivHrDlk~~NILld~----~~~~kl~DFGla  478 (615)
                      .+++.+..           +++.  ..++.+++.++ +|||+++   |+||||||+|||++.    +.+++|+||+.+
T Consensus        95 ~~~l~~~~-----------~~e~--~~~~~~~L~~l~~yLh~~~---IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~  156 (210)
T PRK10345         95 TEFAEQCR-----------YEED--VAQLRQLLKKLKRYLLDNR---IVTMELKPQNILCQRISESEVIPVVCDNIGE  156 (210)
T ss_pred             HHHHHccc-----------ccHh--HHHHHHHHHHHHHHHHHCC---EeecCCCHHHEEEeccCCCCCcEEEEECCCC
Confidence            99996532           4444  35577888888 9999998   999999999999974    348999995543

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.59  E-value=1.3e-14  Score=142.23  Aligned_cols=120  Identities=23%  Similarity=0.305  Sum_probs=102.0

Q ss_pred             ceEEEEEECCeEEEEEEcc---------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATIDGKVLAVKKIK---------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~---------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      +.||+|.++|..++||+..               ..+.+|++++.+++|+|+.....++.+. ...+++|||+++++|.+
T Consensus        10 ~~vy~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~-~~~~lv~e~~~G~~L~~   88 (211)
T PRK14879         10 AEIYLGDFLGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDP-ENFIIVMEYIEGEPLKD   88 (211)
T ss_pred             EEEEEEeeCCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeC-CCCEEEEEEeCCcCHHH
Confidence            5899999999999999743               1356799999999999988777766544 36789999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA  481 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  481 (615)
                      ++...             .+ .+..++.+++.+|.++|+.+   ++|+|++|+|||++ ++.+++.|||+++..
T Consensus        89 ~~~~~-------------~~-~~~~i~~~i~~~l~~lH~~~---i~H~Dl~p~Nil~~-~~~~~liDf~~a~~~  144 (211)
T PRK14879         89 LINSN-------------GM-EELELSREIGRLVGKLHSAG---IIHGDLTTSNMILS-GGKIYLIDFGLAEFS  144 (211)
T ss_pred             HHHhc-------------cH-HHHHHHHHHHHHHHHHHhCC---cccCCCCcccEEEE-CCCEEEEECCcccCC
Confidence            98532             22 78899999999999999998   99999999999999 788999999998764

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.57  E-value=1.1e-13  Score=144.93  Aligned_cols=217  Identities=19%  Similarity=0.228  Sum_probs=156.2

Q ss_pred             ceEEEEEECC---eEEEEEEccH-------HHHHHHHHHHhcCC----CCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATIDG---KVLAVKKIKE-------DVTEELRILQRINH----ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~~g---~~vAvK~~~~-------~~~~Ei~~l~~l~H----~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||.+....   +.+|+|....       .+..|+.++..+.+    +++.++++.....+...++||+.. +.+|.+.
T Consensus        32 G~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~iVM~l~-G~sL~dl  110 (322)
T KOG1164|consen   32 GAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFIVMSLL-GPSLEDL  110 (322)
T ss_pred             ceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEEEEecc-CccHHHH
Confidence            5899998732   4788887653       46789999999873    578888877532344689999988 5699997


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC-----CcEEEeecCCCC--CC
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR-----FKAKIANFSLAA--PA  481 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-----~~~kl~DFGla~--~~  481 (615)
                      .......        .++....++|+.|+..+|++||+.+   ++||||||.|+++...     ..+.+.|||+++  ..
T Consensus       111 ~~~~~~~--------~fs~~T~l~ia~q~l~~l~~lH~~G---~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~  179 (322)
T KOG1164|consen  111 RKRNPPG--------RFSRKTVLRIAIQNLNALEDLHSKG---FIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKY  179 (322)
T ss_pred             HHhCCCC--------CcCHhHHHHHHHHHHHHHHHHHhcC---cccCCcCHHHeeecCCCCcccceEEEEecCCCccccc
Confidence            7554411        3899999999999999999999998   9999999999999865     468999999998  21


Q ss_pred             ---C------C----------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH
Q 047629          482 ---T------N----------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE  530 (615)
Q Consensus       482 ---~------~----------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~  530 (615)
                         .      .                      ..+.+.|+||++-++.|++.|..|+...........   +..     
T Consensus       180 ~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~~~~---~~~-----  251 (322)
T KOG1164|consen  180 VGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDLKSK---FEK-----  251 (322)
T ss_pred             cCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccchHHH---HHH-----
Confidence               0      0                      023578999999999999999999866543222111   110     


Q ss_pred             HHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          531 EKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       531 ~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                          ........+     +....+..+.++...+-..+...+|....+...|+.....
T Consensus       252 ----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Pdy~~~~~~l~~~~~~  300 (322)
T KOG1164|consen  252 ----DPRKLLTDR-----FGDLKPEEFAKILEYIDSLDYEDKPDYEKLAELLKDVFDS  300 (322)
T ss_pred             ----Hhhhhcccc-----ccCCChHHHHHHHHHhhccCCcCCCCHHHHHHHHHHHHHh
Confidence                000111111     1222334566777777779999999999999988766544

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.57  E-value=3e-14  Score=137.18  Aligned_cols=145  Identities=13%  Similarity=0.151  Sum_probs=108.8

Q ss_pred             ceEEEEEECCeEEEEEEccH-----------HHHHHHHHHHhcC-CCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATIDGKVLAVKKIKE-----------DVTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~~-----------~~~~Ei~~l~~l~-H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||...-++..++.+.+..           -+.+|+++|++++ |+++.+++++     ...+++|||+++.+|.+.+.
T Consensus        16 ~~v~~~~~~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~-----~~~~lvmeyI~G~~L~~~~~   90 (218)
T PRK12274         16 GRILLVRGGERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW-----DGRHLDRSYLAGAAMYQRPP   90 (218)
T ss_pred             ceEEEeecCCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE-----cCEEEEEeeecCccHHhhhh
Confidence            35665555778888776642           2678999999995 5889999886     24699999999988875432


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCC-CCCceeeCCCCcEEEeecCCCCCCCCC-----
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI-RTNNIQLDSRFKAKIANFSLAAPATND-----  484 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDl-k~~NILld~~~~~kl~DFGla~~~~~~-----  484 (615)
                      .                 ....+..+++.+|.++|+++   |+|||| ||+|||++.++.++|.|||+|......     
T Consensus        91 ~-----------------~~~~~~~qi~~~L~~lH~~G---IvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~r  150 (218)
T PRK12274         91 R-----------------GDLAYFRAARRLLQQLHRCG---VAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRARWMR  150 (218)
T ss_pred             h-----------------hhHHHHHHHHHHHHHHHHCc---CccCCCCCcceEEEcCCCCEEEEECCCceecCCcchHHH
Confidence            1                 01246778999999999998   999999 799999999999999999999743211     


Q ss_pred             ---------------------CC------------CcccchhHHHHHHHHHcCCCCCCCCC
Q 047629          485 ---------------------VM------------PKFDVFAFGVVLLELLSGKKATRTTE  512 (615)
Q Consensus       485 ---------------------~~------------~k~DV~SfGvvl~ElltG~~p~~~~~  512 (615)
                                           .+            ...+.++-|.-+|.++||+.+.....
T Consensus       151 ~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~~  211 (218)
T PRK12274        151 LLAREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWEDN  211 (218)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCccccC
Confidence                                 01            12466788888888888887765443

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.56  E-value=3.4e-14  Score=138.04  Aligned_cols=130  Identities=22%  Similarity=0.278  Sum_probs=101.8

Q ss_pred             ceEEEEEECCeEEEEEEcc---------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATIDGKVLAVKKIK---------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~---------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      +.||+|.++|..+++|...               ..+.+|++++.+++|+++.....++... ...++||||+++++|.+
T Consensus         8 ~~vy~~~~~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~-~~~~lv~e~~~g~~l~~   86 (199)
T TIGR03724         8 AIIYLGDFLGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDP-DNKTIVMEYIEGKPLKD   86 (199)
T ss_pred             EEEEEeecCCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCEEEEEEECCccHHH
Confidence            5899999999999999843               2245799999999988765544444433 35789999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCCCCC
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMP  487 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~  487 (615)
                      ++....           .      .++.+++.+|.+||+.+   ++|+|+||+||+++ ++.+++.|||+++........
T Consensus        87 ~~~~~~-----------~------~~~~~i~~~l~~lH~~g---i~H~Dl~~~Nil~~-~~~~~liDfg~a~~~~~~~~~  145 (199)
T TIGR03724        87 VIEEGN-----------D------ELLREIGRLVGKLHKAG---IVHGDLTTSNIIVR-DDKLYLIDFGLGKYSDEIEDK  145 (199)
T ss_pred             HHhhcH-----------H------HHHHHHHHHHHHHHHCC---eecCCCCcceEEEE-CCcEEEEECCCCcCCCcHHhh
Confidence            875321           1      77899999999999998   99999999999999 889999999998875443333


Q ss_pred             cccchhH
Q 047629          488 KFDVFAF  494 (615)
Q Consensus       488 k~DV~Sf  494 (615)
                      ..|++.+
T Consensus       146 ~~~~~~~  152 (199)
T TIGR03724       146 AVDLHVL  152 (199)
T ss_pred             hchHHHH
Confidence            4455443

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.54  E-value=1.5e-15  Score=169.90  Aligned_cols=189  Identities=14%  Similarity=0.177  Sum_probs=137.1

Q ss_pred             HHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHH
Q 047629          364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQY  443 (615)
Q Consensus       364 ~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~y  443 (615)
                      +..|+.+-..++|+|++..+..+.+.+ ...-+|||+++ +|..++....          .++-..+-.+..|+..|+.|
T Consensus       368 i~sE~~i~~~l~h~~~~e~l~~~~~~~-~~~~~mE~~~~-Dlf~~~~~~~----------~~~~~e~~c~fKqL~~Gv~y  435 (601)
T KOG0590|consen  368 ITSEFCIGSSLSHPNIIETLDIVQEID-GILQSMEYCPY-DLFSLVMSNG----------KLTPLEADCFFKQLLRGVKY  435 (601)
T ss_pred             hhhheeecccccCCchhhhHHHHhhcc-cchhhhhcccH-HHHHHHhccc----------ccchhhhhHHHHHHHHHHHH
Confidence            445666777789999987776665544 33344999999 9999997653          27788888999999999999


Q ss_pred             HHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC----------------C-----------C-CCcccchhHH
Q 047629          444 MHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN----------------D-----------V-MPKFDVFAFG  495 (615)
Q Consensus       444 LH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~----------------~-----------~-~~k~DV~SfG  495 (615)
                      +|+.+   +.|||+|++|+++..++.+||+|||.+.....                .           + ....||||.|
T Consensus       436 ~h~~G---iahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~  512 (601)
T KOG0590|consen  436 LHSMG---LAHRDLKLENLLVTENGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCG  512 (601)
T ss_pred             HHhcC---ceeccCccccEEEecCCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhcc
Confidence            99999   99999999999999999999999998743211                0           1 1357999999


Q ss_pred             HHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC-CCCCChHHHHHHHHHHHHhhhcCCCCCCC
Q 047629          496 VVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL-ESFYPIDGALSLATLARACTMDKSLSRPN  574 (615)
Q Consensus       496 vvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l-~~~~~~~~~~~l~~l~~~C~~~dP~~RPs  574 (615)
                      +++..|++|+.||......+... .             .........-.. ......+.+.....++.++++.||.+|-+
T Consensus       513 ii~~~m~~~~~~Wk~a~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~P~~R~t  578 (601)
T KOG0590|consen  513 IIYICMILGRFPWKVAKKSDNSF-K-------------TNNYSDQRNIFEGPNRLLSLLPRETRIIIYRMLQLDPTKRIT  578 (601)
T ss_pred             ceEEEEecCCCccccccccccch-h-------------hhccccccccccChHHHHHhchhhHHHHHHHHccCChhheec
Confidence            99999999999987654322110 0             000000000000 00111244556788999999999999999


Q ss_pred             HHHHHHH
Q 047629          575 MAEVVFN  581 (615)
Q Consensus       575 m~ev~~~  581 (615)
                      |.+|++.
T Consensus       579 i~~i~~d  585 (601)
T KOG0590|consen  579 IEQILND  585 (601)
T ss_pred             HHHHhhC
Confidence            9999875

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.54  E-value=4.2e-14  Score=143.50  Aligned_cols=174  Identities=19%  Similarity=0.249  Sum_probs=121.4

Q ss_pred             CCCCcccEEEEEEcC--------------------------CCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHH
Q 047629          375 NHANLVKLMGVSSDS--------------------------QGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWS  428 (615)
Q Consensus       375 ~H~niv~l~g~~~~~--------------------------~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~  428 (615)
                      +|||||++.+++.++                          ...+|+||.-.+. +|.++|....           .+..
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~~~-----------~s~r  341 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWTRH-----------RSYR  341 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhcCC-----------CchH
Confidence            688888887765431                          1136899987765 8999997653           4555


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceee--CCC--CcEEEeecCCCCCCCC----------C----------
Q 047629          429 QRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL--DSR--FKAKIANFSLAAPATN----------D----------  484 (615)
Q Consensus       429 ~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl--d~~--~~~kl~DFGla~~~~~----------~----------  484 (615)
                      ...-|..|+.+|..|||.++   |.|||+|++|||+  |++  -...|+|||.+-....          .          
T Consensus       342 ~~~~~laQlLEav~hL~~hg---vAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lm  418 (598)
T KOG4158|consen  342 TGRVILAQLLEAVTHLHKHG---VAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLM  418 (598)
T ss_pred             HHHHHHHHHHHHHHHHHHcc---chhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceec
Confidence            66678889999999999999   9999999999998  333  4578999997632111          0          


Q ss_pred             ---------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          485 ---------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       485 ---------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                     -..|+|.|+.|-+-||++....||....+  .....   +           ...+--=|.+.+  
T Consensus       419 APEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGe--m~L~~---r-----------~Yqe~qLPalp~--  480 (598)
T KOG4158|consen  419 APEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGE--MLLDT---R-----------TYQESQLPALPS--  480 (598)
T ss_pred             chhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccch--heech---h-----------hhhhhhCCCCcc--
Confidence                           12489999999999999999999976321  11000   0           011111233433  


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                        .++..+.+|+...++.||.+|++..=....|.
T Consensus       481 --~vpp~~rqlV~~lL~r~pskRvsp~iAANvl~  512 (598)
T KOG4158|consen  481 --RVPPVARQLVFDLLKRDPSKRVSPNIAANVLN  512 (598)
T ss_pred             --cCChHHHHHHHHHhcCCccccCCccHHHhHHH
Confidence              33344688999999999999999765555443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.54  E-value=5.9e-15  Score=165.64  Aligned_cols=201  Identities=21%  Similarity=0.312  Sum_probs=146.4

Q ss_pred             eEEEEEECCeEEEEEEcc--------HHHHH---HHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          344 SVYRATIDGKVLAVKKIK--------EDVTE---ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       344 ~Vy~~~~~g~~vAvK~~~--------~~~~~---Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      .|.|++.+.-.|.||++-        ..+.+   |++ ...++|||.+.+.-+- ..+...|||-+|..+ +|+|.|..+
T Consensus        38 Kv~r~k~~eG~vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~-~t~kAAylvRqyvkh-nLyDRlSTR  114 (1431)
T KOG1240|consen   38 KVARAKDREGLVVVKVFVKQDPTISLRPFKQRLEEIK-FALMKAPNCLPFQKVL-VTDKAAYLVRQYVKH-NLYDRLSTR  114 (1431)
T ss_pred             hhhhccCCCceEEEEEEeccCCCCCchHHHHHHHHHH-HHhhcCCcccchHHHH-HhhHHHHHHHHHHhh-hhhhhhccc
Confidence            466777754458888773        22443   444 4456999999887663 234356888899876 899998765


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                      .          +|...+..-|+.|+..||.-.|..+   |.|+|||.+|||+..-..+.|+||.--++..          
T Consensus       115 P----------FL~~iEKkWiaFQLL~al~qcH~~g---VcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNPadf~  181 (1431)
T KOG1240|consen  115 P----------FLVLIEKKWIAFQLLKALSQCHKLG---VCHGDIKSENILITSWNWLYLTDFASFKPTYLPEDNPADFT  181 (1431)
T ss_pred             h----------HHHHHHHHHHHHHHHHHHHHHHHcC---ccccccccceEEEeeechhhhhcccccCCccCCCCCcccce
Confidence            4          4888899999999999999999998   9999999999999999899999997655431          


Q ss_pred             ------------------------------CC-CCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHH
Q 047629          483 ------------------------------ND-VMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVE  530 (615)
Q Consensus       483 ------------------------------~~-~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~  530 (615)
                                                    .. .+++.||||.|||+.||++ |+++|.-..      +.. ++..  ..
T Consensus       182 fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LSQ------L~a-Yr~~--~~  252 (1431)
T KOG1240|consen  182 FFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLSQ------LLA-YRSG--NA  252 (1431)
T ss_pred             EEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHHH------HHh-Hhcc--Cc
Confidence                                          01 4578899999999999999 677775210      110 1100  01


Q ss_pred             HHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          531 EKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       531 ~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ...+..++++-|+.            +..+++.+++.||.+|-++++.++.
T Consensus       253 ~~~e~~Le~Ied~~------------~Rnlil~Mi~rdPs~RlSAedyL~~  291 (1431)
T KOG1240|consen  253 DDPEQLLEKIEDVS------------LRNLILSMIQRDPSKRLSAEDYLQK  291 (1431)
T ss_pred             cCHHHHHHhCcCcc------------HHHHHHHHHccCchhccCHHHHHHh
Confidence            11123344444443            5789999999999999999999987

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.51  E-value=8.9e-14  Score=155.64  Aligned_cols=117  Identities=20%  Similarity=0.274  Sum_probs=96.8

Q ss_pred             ceEEEEEECCeEEEEEEcc---------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATIDGKVLAVKKIK---------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~---------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      +.||+|.+.+..+++|+..               +.+.+|++++.+++|++++....++.+.+ ..++||||+++++|.+
T Consensus       347 g~Vy~~~~~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~-~~~lv~E~~~g~~L~~  425 (535)
T PRK09605        347 ADIKKGEYLGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPE-EKTIVMEYIGGKDLKD  425 (535)
T ss_pred             EEEEEEeecCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCC-CCEEEEEecCCCcHHH
Confidence            4899999976666555321               23568999999999999998877766543 6789999999999998


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~  482 (615)
                      ++.                  ....++.+++.+|.|||+.+   ++||||||+|||+ +++.++|+|||+++...
T Consensus       426 ~l~------------------~~~~~~~~i~~~L~~lH~~g---iiHrDlkp~NILl-~~~~~~liDFGla~~~~  478 (535)
T PRK09605        426 VLE------------------GNPELVRKVGEIVAKLHKAG---IVHGDLTTSNFIV-RDDRLYLIDFGLGKYSD  478 (535)
T ss_pred             HHH------------------HHHHHHHHHHHHHHHHHhCC---CccCCCChHHEEE-ECCcEEEEeCcccccCC
Confidence            874                  23568899999999999998   9999999999999 67899999999998753

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.48  E-value=4.2e-13  Score=128.20  Aligned_cols=156  Identities=19%  Similarity=0.263  Sum_probs=123.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccH-----HHHHHHHHHHhcCCC-CcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE-----DVTEELRILQRINHA-NLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~-----~~~~Ei~~l~~l~H~-niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      |.+|.|..  +|+.||||.-+.     ...-|..+...++|- .|-.+..|..+ ...-.+|||.. +.||.+...-...
T Consensus        29 GdIy~~~~i~~ge~VAiK~Es~~a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e-~~ynvlVMdLL-GPsLEdLfnfC~R  106 (341)
T KOG1163|consen   29 GDIYLGISITSGEEVAIKLESSKAKHPQLLYESKVYRILQGGVGIPHIRHYGTE-KDYNVLVMDLL-GPSLEDLFNFCSR  106 (341)
T ss_pred             hheeeeeeccCCceEEEEeecccCCCcchhHHHHHHHHhccCCCCchhhhhccc-cccceeeeecc-CccHHHHHHHHhh
Confidence            57898886  899999998764     466799999999764 34444444443 33578999998 5689888765443


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC---CcEEEeecCCCCCCCCC-------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR---FKAKIANFSLAAPATND-------  484 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~---~~~kl~DFGla~~~~~~-------  484 (615)
                               .++.++.+-++-|+..-++|+|.++   ++||||||+|.|..-+   .++.+.|||||+...+.       
T Consensus       107 ---------~ftmkTvLMLaDQml~RiEyvH~r~---fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~HIp  174 (341)
T KOG1163|consen  107 ---------RFTMKTVLMLADQMLSRIEYVHLRN---FIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQHIP  174 (341)
T ss_pred             ---------hhhHHhHHHHHHHHHHHHHHHHhhc---cccccCCccceeeccccccceEEEEeccchhhhccccccccCc
Confidence                     3889999999999999999999998   9999999999998643   56889999999754211       


Q ss_pred             -----------------------CCCcccchhHHHHHHHHHcCCCCCCCCC
Q 047629          485 -----------------------VMPKFDVFAFGVVLLELLSGKKATRTTE  512 (615)
Q Consensus       485 -----------------------~~~k~DV~SfGvvl~ElltG~~p~~~~~  512 (615)
                                             .+..-|+=|.|-||....-|..||....
T Consensus       175 yre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglk  225 (341)
T KOG1163|consen  175 YREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLK  225 (341)
T ss_pred             cccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccc
Confidence                                   1346799999999999999999998754

>smart00090 RIO RIO-like kinase

Probab=99.47  E-value=3.3e-13  Score=134.82  Aligned_cols=123  Identities=23%  Similarity=0.228  Sum_probs=95.6

Q ss_pred             ceEEEEE--E-CCeEEEEEEccH-------------------------------HHHHHHHHHHhcCCCC--cccEEEEE
Q 047629          343 KSVYRAT--I-DGKVLAVKKIKE-------------------------------DVTEELRILQRINHAN--LVKLMGVS  386 (615)
Q Consensus       343 ~~Vy~~~--~-~g~~vAvK~~~~-------------------------------~~~~Ei~~l~~l~H~n--iv~l~g~~  386 (615)
                      +.||+|.  . +|+.||||.++.                               .+..|++++.++.+.+  +.+.+++ 
T Consensus        42 g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~~~i~~p~~~~~-  120 (237)
T smart00090       42 ANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYEAGVPVPKPIAW-  120 (237)
T ss_pred             eeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeEe-
Confidence            4899998  3 799999998752                               1347999999997643  3344442 


Q ss_pred             EcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC
Q 047629          387 SDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS  466 (615)
Q Consensus       387 ~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~  466 (615)
                        .  ..++||||+++++|..++....          .+...+...++.|++.++.+||+++  .++||||||+||+++ 
T Consensus       121 --~--~~~lV~E~~~g~~L~~~~~~~~----------~~~~~~~~~i~~qi~~~l~~LH~~g--~iiH~Dikp~NIli~-  183 (237)
T smart00090      121 --R--RNVLVMEFIGGDGLPAPRLKDV----------EPEEEEEFELYDDILEEMRKLYKEG--ELVHGDLSEYNILVH-  183 (237)
T ss_pred             --c--CceEEEEEecCCcccccccccC----------CcchHHHHHHHHHHHHHHHHHHhcC--CEEeCCCChhhEEEE-
Confidence              1  3589999999988876653222          1455667889999999999999885  499999999999999 


Q ss_pred             CCcEEEeecCCCCCCCC
Q 047629          467 RFKAKIANFSLAAPATN  483 (615)
Q Consensus       467 ~~~~kl~DFGla~~~~~  483 (615)
                      ++++++.|||++.....
T Consensus       184 ~~~i~LiDFg~a~~~~~  200 (237)
T smart00090      184 DGKVVIIDVSQSVELDH  200 (237)
T ss_pred             CCCEEEEEChhhhccCC
Confidence            88999999999876544

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.45  E-value=6.8e-13  Score=129.02  Aligned_cols=116  Identities=21%  Similarity=0.237  Sum_probs=92.0

Q ss_pred             ceEEEEEE-CCeEEEEEEccH-----------------------------HHHHHHHHHHhcCCCC--cccEEEEEEcCC
Q 047629          343 KSVYRATI-DGKVLAVKKIKE-----------------------------DVTEELRILQRINHAN--LVKLMGVSSDSQ  390 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~~-----------------------------~~~~Ei~~l~~l~H~n--iv~l~g~~~~~~  390 (615)
                      +.||++.. +|+.||||+++.                             ....|..++.++.|++  +.+.++.     
T Consensus        29 g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~v~~~~~~-----  103 (198)
T cd05144          29 SDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGFPVPKPIDW-----  103 (198)
T ss_pred             eEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCCCCCceeec-----
Confidence            47999988 799999997431                             2456888999998874  4444432     


Q ss_pred             CcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcE
Q 047629          391 GNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA  470 (615)
Q Consensus       391 ~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~  470 (615)
                      ...++||||+++++|......                .....++.+++.++.++|+.+   ++||||||+||++++++.+
T Consensus       104 ~~~~lv~e~~~g~~L~~~~~~----------------~~~~~~~~~i~~~l~~lh~~g---i~H~Dl~p~Nill~~~~~~  164 (198)
T cd05144         104 NRHAVVMEYIDGVELYRVRVL----------------EDPEEVLDEILEEIVKAYKHG---IIHGDLSEFNILVDDDEKI  164 (198)
T ss_pred             CCceEEEEEeCCcchhhcccc----------------ccHHHHHHHHHHHHHHHHHCC---CCcCCCCcccEEEcCCCcE
Confidence            245899999999998765321                123567889999999999987   9999999999999999999


Q ss_pred             EEeecCCCCCCC
Q 047629          471 KIANFSLAAPAT  482 (615)
Q Consensus       471 kl~DFGla~~~~  482 (615)
                      +|+|||++....
T Consensus       165 ~liDfg~~~~~~  176 (198)
T cd05144         165 YIIDWPQMVSTD  176 (198)
T ss_pred             EEEECCccccCC
Confidence            999999986543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.43  E-value=1.4e-12  Score=130.56  Aligned_cols=122  Identities=18%  Similarity=0.230  Sum_probs=95.9

Q ss_pred             ceEEEEEECCeEEEEEEccH--------------------HHHHHHHHHHhcCCCCc--ccEEEEEEcCCCc---EEEEE
Q 047629          343 KSVYRATIDGKVLAVKKIKE--------------------DVTEELRILQRINHANL--VKLMGVSSDSQGN---RFLVY  397 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~~--------------------~~~~Ei~~l~~l~H~ni--v~l~g~~~~~~~~---~~lV~  397 (615)
                      ++||+....|..++||+.+.                    .+.+|++++.+++|+++  .+.+++.....+.   .++|+
T Consensus        46 gtv~~v~~~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~~~~~~~~lV~  125 (239)
T PRK01723         46 GTTWFVQTPGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRHGLFYRADILI  125 (239)
T ss_pred             ccEEEEEeCCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeeecCcceeeeEEE
Confidence            48998888888999987631                    24569999999998885  6777765433322   35999


Q ss_pred             eecCC-CCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecC
Q 047629          398 EYAEN-GSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFS  476 (615)
Q Consensus       398 E~~~~-GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  476 (615)
                      |++++ .+|.+++....           ++..    .+.+++.+|.+||+.+   |+||||||.|||++.++.++|.|||
T Consensus       126 e~l~G~~~L~~~l~~~~-----------l~~~----~~~~i~~~l~~lH~~G---I~HrDlkp~NILv~~~~~v~LIDfg  187 (239)
T PRK01723        126 ERIEGARDLVALLQEAP-----------LSEE----QWQAIGQLIARFHDAG---VYHADLNAHNILLDPDGKFWLIDFD  187 (239)
T ss_pred             EecCCCCCHHHHHhcCC-----------CCHH----HHHHHHHHHHHHHHCC---CCCCCCCchhEEEcCCCCEEEEECC
Confidence            99997 69999886421           4433    2568899999999998   9999999999999998999999999


Q ss_pred             CCCCCC
Q 047629          477 LAAPAT  482 (615)
Q Consensus       477 la~~~~  482 (615)
                      .+....
T Consensus       188 ~~~~~~  193 (239)
T PRK01723        188 RGELRT  193 (239)
T ss_pred             CcccCC
Confidence            877643

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.37  E-value=2.4e-12  Score=130.29  Aligned_cols=144  Identities=21%  Similarity=0.279  Sum_probs=96.0

Q ss_pred             EEEEEeecCCCCHHHhhcc---CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCc
Q 047629          393 RFLVYEYAENGSLDKWLHP---KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK  469 (615)
Q Consensus       393 ~~lV~E~~~~GsL~~~L~~---~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~  469 (615)
                      .+++|+-+ .++|.+++..   ....      ...+....++.+..|+.+-+++||+++   ++|+||||+|++++.+|.
T Consensus       114 ~~~l~P~~-~~dL~~~~~~l~~~~~~------~~~l~~~arl~lT~Q~I~lvA~Lh~~G---lVHgdi~~~nfll~~~G~  183 (288)
T PF14531_consen  114 RFLLMPRA-QGDLQDLVEALFSRAQT------HSPLAFAARLSLTVQMIRLVANLHSYG---LVHGDIKPENFLLDQDGG  183 (288)
T ss_dssp             EEEEEE---SEEHHHHHHHHHHHTTT------SHHHHHHHHHHHHHHHHHHHHHHHHTT---EEEST-SGGGEEE-TTS-
T ss_pred             hhhccchh-hhcHHHHHHHHhhcccc------cchhHHHHHHHHHHHHHHHHHHHhhcc---eEecccceeeEEEcCCCC
Confidence            36778877 4688887543   2110      113566778888899999999999999   999999999999999999


Q ss_pred             EEEeecCCCCCCCC----------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHH
Q 047629          470 AKIANFSLAAPATN----------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWK  521 (615)
Q Consensus       470 ~kl~DFGla~~~~~----------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~  521 (615)
                      ++|+||+.......                            .++.+.|.|++|+++|.|++|+.|+..........   
T Consensus       184 v~Lg~F~~~~r~g~~~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~~~~~~~---  260 (288)
T PF14531_consen  184 VFLGDFSSLVRAGTRYRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGLSSPEADPE---  260 (288)
T ss_dssp             EEE--GGGEEETTEEEEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCCGGGSTSG---
T ss_pred             EEEcChHHHeecCceeeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCCCCCcccccc---
Confidence            99999986532110                            13557799999999999999999998654211100   


Q ss_pred             HHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCC
Q 047629          522 EIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSR  572 (615)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~R  572 (615)
                                           +.. ..+. +.++.+..|+...++.||.+|
T Consensus       261 ---------------------~~f-~~C~-~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  261 ---------------------WDF-SRCR-DMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             ---------------------GGG-TTSS----HHHHHHHHHHT-SSGGGS
T ss_pred             ---------------------ccc-hhcC-CcCHHHHHHHHHHccCCcccC
Confidence                                 011 1233 666778999999999999988

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.36  E-value=4.7e-13  Score=143.91  Aligned_cols=133  Identities=25%  Similarity=0.320  Sum_probs=112.5

Q ss_pred             HHHHHHHHHhcC-CCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHH
Q 047629          364 VTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQ  442 (615)
Q Consensus       364 ~~~Ei~~l~~l~-H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~  442 (615)
                      ...|..++..++ |+.+|++.-. .+.++..+++++|..+|.|...+.....          ++......+...++-+++
T Consensus        43 t~~er~il~~~~~~~f~v~lhya-fqt~~kl~l~ld~~rgg~lft~l~~~~~----------f~~~~~~~~~aelaLald  111 (612)
T KOG0603|consen   43 TKQERIILAFVHNTPFLVKLHYA-FQTDGKLYLILDFLRGGDLFTRLSKEVM----------FDELDVAFYLAELALALD  111 (612)
T ss_pred             cccHHHHHhhccCCCceeeeeee-eccccchhHhhhhcccchhhhccccCCc----------hHHHHHHHHHHHHHHHHh
Confidence            345788888886 9999998755 4567789999999999999988876543          666677777888999999


Q ss_pred             HHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------------CCCCCcccchhHHHHHHHHHcCC
Q 047629          443 YMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------------NDVMPKFDVFAFGVVLLELLSGK  505 (615)
Q Consensus       443 yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------------~~~~~k~DV~SfGvvl~ElltG~  505 (615)
                      ++|+.+   ++|||+|++||+++.+|.+|+.|||+++...                 +.....+|.||||++++||+||-
T Consensus       112 ~lh~l~---iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~~cgt~eymApEI~~gh~~a~D~ws~gvl~felltg~  188 (612)
T KOG0603|consen  112 HLHKLG---IAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKIACGTYEYRAPEIINGHLSAADWWSFGVLAFELLTGT  188 (612)
T ss_pred             hcchhH---HHHhcccccceeecccCccccCCchhhhHhHhhhhcccchhhhhhHhhhccCCcccchhhhhhHHHHhhCC
Confidence            999998   9999999999999999999999999986531                 12456799999999999999999


Q ss_pred             CCCCC
Q 047629          506 KATRT  510 (615)
Q Consensus       506 ~p~~~  510 (615)
                      .||..
T Consensus       189 ~pf~~  193 (612)
T KOG0603|consen  189 LPFGG  193 (612)
T ss_pred             CCCch
Confidence            99875

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.32  E-value=1.3e-11  Score=113.01  Aligned_cols=121  Identities=21%  Similarity=0.287  Sum_probs=100.8

Q ss_pred             ceEEEEEECCeEEEEEEccH-----HHHHHHHHHHhcCC--CCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATIDGKVLAVKKIKE-----DVTEELRILQRINH--ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~~-----~~~~Ei~~l~~l~H--~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      +.||++..++..+++|..+.     ++..|+..+..++|  .++.+++++... .+..++++||++++.+..+       
T Consensus        12 ~~v~~~~~~~~~~~iK~~~~~~~~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~-~~~~~~v~e~~~g~~~~~~-------   83 (155)
T cd05120          12 NRVYLLGTKDEDYVLKINPSREKGADREREVAILQLLARKGLPVPKVLASGES-DGWSYLLMEWIEGETLDEV-------   83 (155)
T ss_pred             cceEEEEecCCeEEEEecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCccEEEEEecCCeecccC-------
Confidence            47999999888999998863     57899999999976  588898887654 3578999999988766543       


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA  481 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  481 (615)
                                ++.....++.+++.+|.++|......++|+|+||+||+++..+.+++.|||.++..
T Consensus        84 ----------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~  139 (155)
T cd05120          84 ----------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYG  139 (155)
T ss_pred             ----------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccCC
Confidence                      34566778899999999999875556999999999999999899999999987653

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.32  E-value=3.5e-11  Score=120.09  Aligned_cols=162  Identities=17%  Similarity=0.257  Sum_probs=124.1

Q ss_pred             cccccc----ceEEEEEE--CCeEEEEEEcc-----HHHHHHHHHHHhcC-CCCcccEEEEEEcCCCcEEEEEeecCCCC
Q 047629          337 EHYSIG----KSVYRATI--DGKVLAVKKIK-----EDVTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGS  404 (615)
Q Consensus       337 ~~~~iG----~~Vy~~~~--~g~~vAvK~~~-----~~~~~Ei~~l~~l~-H~niv~l~g~~~~~~~~~~lV~E~~~~Gs  404 (615)
                      ...+||    |..+.|+.  +++.||||.-.     .++..|....+.|. .++|-..+-+-.+. -.-.||+|.. +-|
T Consensus        32 VGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG-~~NiLVidLL-GPS  109 (449)
T KOG1165|consen   32 VGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEG-KYNILVIDLL-GPS  109 (449)
T ss_pred             eccccccCcceeeecccccccCceEEEEeccccCCcchHHHHHHHHHHHcCCCCCCceeeecccc-chhhhhhhhh-CcC
Confidence            334555    35666663  89999999753     25778888888885 56776655332222 2357999998 558


Q ss_pred             HHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC-----CcEEEeecCCCC
Q 047629          405 LDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR-----FKAKIANFSLAA  479 (615)
Q Consensus       405 L~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-----~~~kl~DFGla~  479 (615)
                      |.+...-+..         .++.+....+|.|+..-++|+|++.   +|.|||||+|+||..-     ..+.+.|||+|+
T Consensus       110 LEDLFD~CgR---------~FSvKTV~miA~Qmi~rie~vH~k~---LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK  177 (449)
T KOG1165|consen  110 LEDLFDLCGR---------RFSVKTVAMIAKQMITRIEYVHEKD---LIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAK  177 (449)
T ss_pred             HHHHHHHhcC---------cccHHhHHHHHHHHHHHHHHHHhcc---eeecccCccceeecCCCCCCCceEEEEeccchh
Confidence            8887765543         3899999999999999999999998   9999999999999653     458999999997


Q ss_pred             CCCCC------------------------------CCCcccchhHHHHHHHHHcCCCCCCCCC
Q 047629          480 PATND------------------------------VMPKFDVFAFGVVLLELLSGKKATRTTE  512 (615)
Q Consensus       480 ~~~~~------------------------------~~~k~DV~SfGvvl~ElltG~~p~~~~~  512 (615)
                      ...+.                              -+..-|+=|+|-|++..+-|..||....
T Consensus       178 ~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLK  240 (449)
T KOG1165|consen  178 EYRDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLK  240 (449)
T ss_pred             hhcCccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCcccccc
Confidence            64322                              1346799999999999999999998755

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.25  E-value=2.7e-11  Score=116.36  Aligned_cols=119  Identities=24%  Similarity=0.281  Sum_probs=85.8

Q ss_pred             ceEEEEEE-CCeEEEEEEccHH---------H----------------------HHHHHHHHhcCCCC--cccEEEEEEc
Q 047629          343 KSVYRATI-DGKVLAVKKIKED---------V----------------------TEELRILQRINHAN--LVKLMGVSSD  388 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~~~---------~----------------------~~Ei~~l~~l~H~n--iv~l~g~~~~  388 (615)
                      +.||++.. +|+.||||+++..         .                      ..|.+.+.++++..  +.+.+++   
T Consensus        11 g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~---   87 (187)
T cd05119          11 ADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPVPKPIDL---   87 (187)
T ss_pred             eeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCCCceEec---
Confidence            48999988 5999999987521         1                      24555666664443  3444432   


Q ss_pred             CCCcEEEEEeecCCCCHHHh-hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHh-CCCCCeEecCCCCCceeeCC
Q 047629          389 SQGNRFLVYEYAENGSLDKW-LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE-HAQPSIVHRDIRTNNIQLDS  466 (615)
Q Consensus       389 ~~~~~~lV~E~~~~GsL~~~-L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~ivHrDlk~~NILld~  466 (615)
                        ...++||||+++|.+... +....           .. .+...++.+++.++.++|. .+   |+||||||+||+++ 
T Consensus        88 --~~~~lv~e~~~g~~~~~~~l~~~~-----------~~-~~~~~~~~~~~~~l~~lh~~~~---ivH~Dl~p~Nili~-  149 (187)
T cd05119          88 --NRHVLVMEFIGGDGIPAPRLKDVR-----------LL-EDPEELYDQILELMRKLYREAG---LVHGDLSEYNILVD-  149 (187)
T ss_pred             --CCCEEEEEEeCCCCccChhhhhhh-----------hc-ccHHHHHHHHHHHHHHHhhccC---cCcCCCChhhEEEE-
Confidence              145899999999654321 11100           11 5567889999999999999 76   99999999999999 


Q ss_pred             CCcEEEeecCCCCCCC
Q 047629          467 RFKAKIANFSLAAPAT  482 (615)
Q Consensus       467 ~~~~kl~DFGla~~~~  482 (615)
                      ++.+++.|||.+....
T Consensus       150 ~~~~~liDfg~a~~~~  165 (187)
T cd05119         150 DGKVYIIDVPQAVEID  165 (187)
T ss_pred             CCcEEEEECccccccc
Confidence            8999999999986554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=4.1e-11  Score=137.54  Aligned_cols=123  Identities=21%  Similarity=0.303  Sum_probs=92.2

Q ss_pred             ceEEEEEE-CCeEEEEEEccHH----HHHHHHHHHhcC---CCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIKED----VTEELRILQRIN---HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~~~----~~~Ei~~l~~l~---H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      ++||+|.- +|+.||+|.-+..    |--=.+++.||+   -+-|..+.......+ .-+||+||.+.|+|.+++...+ 
T Consensus       712 ~~vy~a~~~~~~~~alK~e~P~~~WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~-~S~lv~ey~~~Gtlld~~N~~~-  789 (974)
T KOG1166|consen  712 GSVYVATHSNGKLVALKVEKPPNPWEFYICLQVMERLKPQMLPSIMHISSAHVFQN-ASVLVSEYSPYGTLLDLINTNK-  789 (974)
T ss_pred             eEEEEeecCCCcEEEEEeecCCCceeeeehHHHHHhhchhhhcchHHHHHHHccCC-cceeeeeccccccHHHhhccCC-
Confidence            48999997 8999999987632    222234455555   112222222222223 4689999999999999998433 


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeC-------CCCcEEEeecCCCC
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD-------SRFKAKIANFSLAA  479 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld-------~~~~~kl~DFGla~  479 (615)
                               .++|.-...+..|+++-+++||..+   |||+||||+|.||-       ++..++|.|||-+-
T Consensus       790 ---------~m~e~lv~~~~~qml~ive~lH~~~---IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~si  849 (974)
T KOG1166|consen  790 ---------VMDEYLVMFFSCQMLRIVEHLHAMG---IIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSI  849 (974)
T ss_pred             ---------CCCchhhhHHHHHHHHHHHHHHhcc---eecccCCcceeEeecccCCCCcccceEEEecccce
Confidence                     3899999999999999999999998   99999999999993       23568999999873

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=7.6e-12  Score=132.28  Aligned_cols=150  Identities=23%  Similarity=0.386  Sum_probs=109.7

Q ss_pred             cEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEE
Q 047629          392 NRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAK  471 (615)
Q Consensus       392 ~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~k  471 (615)
                      .+++.|+++..++|.+||......       ...+|...+.+..|++.|++|   ++   .+|||+||.||....+..+|
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~-------e~~s~s~~~~~~~q~~~~~~y---k~---~ihrdlkp~nif~~~d~q~k  396 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTG-------EERSLSLMLDIFKQIAPAVEY---KG---LIHRDLKPSNIFFSDDDQLK  396 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcc-------cccchhHHHHHHHhhccchhh---cc---chhhhccccccccccchhhh
Confidence            478999999999999999765432       137889999999999999999   55   89999999999999999999


Q ss_pred             EeecCCCCCCC-----------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHH
Q 047629          472 IANFSLAAPAT-----------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWK  521 (615)
Q Consensus       472 l~DFGla~~~~-----------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~  521 (615)
                      |+|||+.....                             ..++.|+|+||+|++|+||+. =..+++...         
T Consensus       397 IgDFgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~er~~---------  467 (516)
T KOG1033|consen  397 IGDFGLVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFERIA---------  467 (516)
T ss_pred             hhhhhheeecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHHHHH---------
Confidence            99999964321                             225679999999999999987 222221100         


Q ss_pred             HHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHH
Q 047629          522 EIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEV  578 (615)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev  578 (615)
                            ..    .+.-...++|....++|.+     ..+..+.+...|.+||+..++
T Consensus       468 ------t~----~d~r~g~ip~~~~~d~p~e-----~~ll~~lls~~p~~RP~~~~~  509 (516)
T KOG1033|consen  468 ------TL----TDIRDGIIPPEFLQDYPEE-----YTLLQQLLSPSPEERPSAIEV  509 (516)
T ss_pred             ------hh----hhhhcCCCChHHhhcCcHH-----HHHHHHhcCCCcccCchHHHH
Confidence                  00    0011122333333455544     578899999999999954443

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.19  E-value=1.2e-10  Score=126.72  Aligned_cols=126  Identities=22%  Similarity=0.233  Sum_probs=89.1

Q ss_pred             ceEEEEEE-CCeEEEEEEccH----H-------------------------------------------HHHHHHHHHhc
Q 047629          343 KSVYRATI-DGKVLAVKKIKE----D-------------------------------------------VTEELRILQRI  374 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~~----~-------------------------------------------~~~Ei~~l~~l  374 (615)
                      |.||+|++ +|+.||||+.+.    .                                           +..|...+.++
T Consensus       131 gQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~~Ea~n~~~~  210 (437)
T TIGR01982       131 AQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLRREAANASEL  210 (437)
T ss_pred             hheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence            48999998 899999998751    1                                           22344444444


Q ss_pred             ----CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHH-HHHHHHhCCC
Q 047629          375 ----NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVAN-GLQYMHEHAQ  449 (615)
Q Consensus       375 ----~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~-gL~yLH~~~~  449 (615)
                          +|.+-+.+-.++.+..+..+|||||+++++|.++......         ..   .+.+++..++. .+..+|..+ 
T Consensus       211 ~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~---------~~---~~~~ia~~~~~~~l~ql~~~g-  277 (437)
T TIGR01982       211 GENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEA---------GL---DRKALAENLARSFLNQVLRDG-  277 (437)
T ss_pred             HHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhc---------CC---CHHHHHHHHHHHHHHHHHhCC-
Confidence                2333344434443333457999999999999887653221         12   23456666665 468889887 


Q ss_pred             CCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC
Q 047629          450 PSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN  483 (615)
Q Consensus       450 ~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~  483 (615)
                        ++|+|+||.||+++.++++++.|||++.....
T Consensus       278 --~~H~D~hPgNilv~~~g~i~liDfG~~~~l~~  309 (437)
T TIGR01982       278 --FFHADLHPGNIFVLKDGKIIALDFGIVGRLSE  309 (437)
T ss_pred             --ceeCCCCcccEEECCCCcEEEEeCCCeeECCH
Confidence              99999999999999999999999999877643

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.10  E-value=7.5e-11  Score=117.69  Aligned_cols=184  Identities=21%  Similarity=0.340  Sum_probs=125.0

Q ss_pred             HHHHHhcCCCCcccEEEEEEcCCC----cEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHH
Q 047629          368 LRILQRINHANLVKLMGVSSDSQG----NRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQY  443 (615)
Q Consensus       368 i~~l~~l~H~niv~l~g~~~~~~~----~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~y  443 (615)
                      ..-|-++-|.|||++..|+.+.+.    +..++.|||+.|+|.+||++.....      ..+......+|+-||..||.|
T Consensus       118 FdnllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~------~a~~~~~wkkw~tqIlsal~y  191 (458)
T KOG1266|consen  118 FDNLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQ------KALFQKAWKKWCTQILSALSY  191 (458)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhh------hhhhHHHHHHHHHHHHhhhhh
Confidence            344556789999999998765432    3678999999999999998755421      237777888999999999999


Q ss_pred             HHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCC------------------------CCCC---CCCCCcccchhHHH
Q 047629          444 MHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------------------APAT---NDVMPKFDVFAFGV  496 (615)
Q Consensus       444 LH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla------------------------~~~~---~~~~~k~DV~SfGv  496 (615)
                      ||+. .|+|+|+++..+.|.+..++-+|++--...                        +...   ...+..+|||+||+
T Consensus       192 Lhs~-~PpiihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgm  270 (458)
T KOG1266|consen  192 LHSC-DPPIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGM  270 (458)
T ss_pred             hhcc-CCccccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhH
Confidence            9997 688999999999999999888887632111                        0000   11245789999999


Q ss_pred             HHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHH
Q 047629          497 VLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMA  576 (615)
Q Consensus       497 vl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~  576 (615)
                      ..+||..|.--....+.....  ...+..          .+.. ....+.           +.++..|++..|..||+|+
T Consensus       271 cAlemailEiq~tnseS~~~~--ee~ia~----------~i~~-len~lq-----------r~~i~kcl~~eP~~rp~ar  326 (458)
T KOG1266|consen  271 CALEMAILEIQSTNSESKVEV--EENIAN----------VIIG-LENGLQ-----------RGSITKCLEGEPNGRPDAR  326 (458)
T ss_pred             HHHHHHHheeccCCCcceeeh--hhhhhh----------heee-ccCccc-----------cCcCcccccCCCCCCcchh
Confidence            999998876322111110000  000000          0000 001111           3556899999999999999


Q ss_pred             HHHHHH
Q 047629          577 EVVFNL  582 (615)
Q Consensus       577 ev~~~L  582 (615)
                      +++.+.
T Consensus       327 ~llfHp  332 (458)
T KOG1266|consen  327 LLLFHP  332 (458)
T ss_pred             hhhcCc
Confidence            987653

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.00  E-value=2.8e-09  Score=100.38  Aligned_cols=129  Identities=18%  Similarity=0.180  Sum_probs=94.4

Q ss_pred             ceEEEEEECCeEEEEEEccH------HHHHHHHHHHhcCCCCcc-cEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATIDGKVLAVKKIKE------DVTEELRILQRINHANLV-KLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~~------~~~~Ei~~l~~l~H~niv-~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      +.||+....|+.+++|....      ++..|..++..+.+.+++ +++++.  .+ ..++||||+++.++.+.    .. 
T Consensus        12 ~~vy~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~~-~~~lv~e~i~G~~l~~~----~~-   83 (170)
T cd05151          12 NKNYRVEVANKKYVVRIPGNGTELLINRENEAENSKLAAEAGIGPKLYYFD--PE-TGVLITEFIEGSELLTE----DF-   83 (170)
T ss_pred             CceEEEEECCeEEEEEeCCCCcccccCHHHHHHHHHHHHHhCCCCceEEEe--CC-CCeEEEEecCCCccccc----cc-
Confidence            47999988899999998743      357899999999766655 455442  22 35899999999877543    00 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCC--CCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCCCCCcccchh
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA--QPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFA  493 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~--~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~k~DV~S  493 (615)
                               .    ...++.+++++|..||...  ...++|+|++|.||+++ ++.+++.|||.+....       -.|-
T Consensus        84 ---------~----~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~~~-------~~~D  142 (170)
T cd05151          84 ---------S----DPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGMND-------PLFD  142 (170)
T ss_pred             ---------c----CHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccCCC-------hHHH
Confidence                     1    1234678999999999986  23469999999999999 6689999999876432       1455


Q ss_pred             HHHHHHH
Q 047629          494 FGVVLLE  500 (615)
Q Consensus       494 fGvvl~E  500 (615)
                      ++.++.+
T Consensus       143 la~~~~~  149 (170)
T cd05151         143 LANFFSE  149 (170)
T ss_pred             HHHHHHh
Confidence            6766654

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.95  E-value=1.6e-08  Score=111.57  Aligned_cols=123  Identities=15%  Similarity=0.163  Sum_probs=79.7

Q ss_pred             ceEEEEEE-C-CeEEEEEEccHH-----------------------------------------------HHHHHHHHHh
Q 047629          343 KSVYRATI-D-GKVLAVKKIKED-----------------------------------------------VTEELRILQR  373 (615)
Q Consensus       343 ~~Vy~~~~-~-g~~vAvK~~~~~-----------------------------------------------~~~Ei~~l~~  373 (615)
                      +.||++++ + |+.||||+.+..                                               +.+|...+.+
T Consensus       133 aQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~~ElD~~~Ea~N~~~  212 (537)
T PRK04750        133 AQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLHDELDLMREAANASQ  212 (537)
T ss_pred             cEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            58999998 5 999999988511                                               2234444444


Q ss_pred             c----CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh--ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhC
Q 047629          374 I----NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL--HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH  447 (615)
Q Consensus       374 l----~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L--~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~  447 (615)
                      +    .+.+.+.+-.++.+-....+|||||+++++|.++-  ...+..      ...+.......++       .-++..
T Consensus       213 ~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d------~~~la~~~v~~~~-------~Qif~~  279 (537)
T PRK04750        213 LRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTD------MKLLAERGVEVFF-------TQVFRD  279 (537)
T ss_pred             HHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCC------HHHHHHHHHHHHH-------HHHHhC
Confidence            4    24455555455544444678999999999998752  221100      0012222222222       334456


Q ss_pred             CCCCeEecCCCCCceeeCCCC----cEEEeecCCCCCC
Q 047629          448 AQPSIVHRDIRTNNIQLDSRF----KAKIANFSLAAPA  481 (615)
Q Consensus       448 ~~~~ivHrDlk~~NILld~~~----~~kl~DFGla~~~  481 (615)
                      +   ++|+|+||.||+++.++    ++++.|||++...
T Consensus       280 G---ffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l  314 (537)
T PRK04750        280 G---FFHADMHPGNIFVSYDPPENPRYIALDFGIVGSL  314 (537)
T ss_pred             C---eeeCCCChHHeEEecCCCCCCeEEEEecceEEEC
Confidence            6   99999999999999888    9999999998654

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=98.93  E-value=1.2e-09  Score=123.65  Aligned_cols=117  Identities=21%  Similarity=0.374  Sum_probs=83.9

Q ss_pred             HHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------------------------------
Q 047629          437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------------------------------  482 (615)
Q Consensus       437 ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------------------------------  482 (615)
                      ++.+++|||+.+   |+|||+||+|.|+..-+.+|++|||+++..-                                  
T Consensus       152 mvla~Eylh~yg---ivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPe  228 (1205)
T KOG0606|consen  152 MVLAVEYLHSYG---IVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPE  228 (1205)
T ss_pred             hhHHhHhhccCC---eecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChh
Confidence            378999999998   9999999999999999999999999985320                                  


Q ss_pred             ----CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHH
Q 047629          483 ----NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLA  558 (615)
Q Consensus       483 ----~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~  558 (615)
                          ..|...+|.|++|+++||.+-|+.||......+   +...+   +.       ...+|.+.  ...++    .+..
T Consensus       229 VilrqgygkpvdwwamGiIlyeFLVgcvpffGdtpee---lfg~v---is-------d~i~wpE~--dea~p----~Ea~  289 (1205)
T KOG0606|consen  229 VILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEE---LFGQV---IS-------DDIEWPEE--DEALP----PEAQ  289 (1205)
T ss_pred             hhhhhccCCCccHHHHHHHHHHHheeeeeccCCCHHH---HHhhh---hh-------hhcccccc--CcCCC----HHHH
Confidence                114567999999999999999999998765322   11111   10       01111111  11222    3467


Q ss_pred             HHHHHhhhcCCCCCCCH
Q 047629          559 TLARACTMDKSLSRPNM  575 (615)
Q Consensus       559 ~l~~~C~~~dP~~RPsm  575 (615)
                      +++...++.+|..|---
T Consensus       290 dli~~LL~qnp~~Rlgt  306 (1205)
T KOG0606|consen  290 DLIEQLLRQNPLCRLGT  306 (1205)
T ss_pred             HHHHHHHHhChHhhccc
Confidence            88889999999988643

>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional

Probab=98.87  E-value=2.8e-08  Score=107.87  Aligned_cols=160  Identities=14%  Similarity=0.160  Sum_probs=113.9

Q ss_pred             CCCCCHHHHHHhhCCChHHHHhhcCCCCCCCCCCCC-ccEEeeeeeccC------C-------Cc------eeeeeeEEe
Q 047629           52 PEFLDLSNISDLFGVSRLSIARASNLVSEDTPLVPK-QLLLVPIICGCT------G-------NQ------YFANITYQI  111 (615)
Q Consensus        52 ~~~~~l~~i~~lf~~~~~~i~~~n~~~~~~~~~~~~-~~~~vP~~C~C~------~-------~~------~~~~~~y~v  111 (615)
                      +...+|..||.++|++..+|...|+........+.| +.++||..-.=.      .       +.      ......|+|
T Consensus       269 ~~~i~L~~iA~~~gvs~~eL~~LNP~~kr~~t~p~g~~~llvP~~~~~~f~~~l~~~~~~~~~p~~~~~~~~~~~~~y~V  348 (456)
T PRK10783        269 GQQIELAQAAEMAGMSLTKLKTFNAGYKRSTTAPSGPHYIMVPKKHADQLRESLASGEIAAVQSTLVADNTPLNSRSYKV  348 (456)
T ss_pred             CCCcCHHHHHHHcCCCHHHHHHhCccccCCCcCCCCCeEEEecCchhhHHHHhhhhhhhhhcccccccccCcCCceEEEE
Confidence            445699999999999999999999854332222233 677788842100      0       00      012357999


Q ss_pred             ecCCchhhhhhhhcCCcchHHHHHHhCCCCCCCCcCCCcEEEEEeeccCCCCCCCCCCeeEEEEEecCCCCchhHHHHHh
Q 047629          112 KKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLITYVWQPGDDVSQVGAKL  191 (615)
Q Consensus       112 ~~gdt~~~ia~~~~~~L~t~~~~~~~n~~~~~~~l~~G~~~~vpl~c~C~~~~~~s~~~~~l~ty~~~~gd~~~~ia~~F  191 (615)
                      ++|||+..||...  |++. .++...|+..+ +.+.+|+++.+|..|.|....    ......+|.|+.||++..||.+|
T Consensus       349 k~GDTL~sIA~r~--gvs~-~~L~~~N~l~~-~~L~~Gq~L~Ip~~~~~~~~~----~~~~~~~Y~Vr~GDTL~sIA~ky  420 (456)
T PRK10783        349 RSGDTLSGIASRL--NVST-KDLQQWNNLRG-SKLKVGQTLTIGAGSSAQRLA----NNSDSITYRVRKGDSLSSIAKRH  420 (456)
T ss_pred             CCCCcHHHHHHHH--CcCH-HHHHHHcCCCc-ccCCCCCEEEecCCccccccc----ccccceeEEeCCCCCHHHHHHHh
Confidence            9999999999875  5554 67888898654 789999999999766553211    11223689999999999999999


Q ss_pred             cCChhhHhhhccccCccccCccceeccc
Q 047629          192 NASSAAIETENEYRNFSEAVSLPVLIPV  219 (615)
Q Consensus       192 ~~s~~~i~~~n~~~~~~~~~~~~~l~p~  219 (615)
                      |++...+...|+.......+|..+-+++
T Consensus       421 gVtv~~L~~~N~l~~~~L~pGq~L~l~v  448 (456)
T PRK10783        421 GVNIKDVMRWNSDTAKNLQPGDKLTLFV  448 (456)
T ss_pred             CCCHHHHHHhcCCCCCcCCCCCEEEEec
Confidence            9999999999987322555666655544

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.82  E-value=9.1e-08  Score=101.43  Aligned_cols=162  Identities=17%  Similarity=0.269  Sum_probs=125.9

Q ss_pred             ceEEEEEE--CCeEEEEEEccH-------HHHHHHHHHHhcCCCCcccEEEEEEc---CCCcEEEEEeecCC-CCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKE-------DVTEELRILQRINHANLVKLMGVSSD---SQGNRFLVYEYAEN-GSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~-------~~~~Ei~~l~~l~H~niv~l~g~~~~---~~~~~~lV~E~~~~-GsL~~~L  409 (615)
                      .+.||+.-  ||..+..|++..       ....-++.++++.|.|+|++..++..   .+..+++||+|.|+ ++|.++-
T Consensus       290 ~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~~  369 (655)
T KOG3741|consen  290 ITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDLY  369 (655)
T ss_pred             ceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHHHH
Confidence            47888886  899999999942       23356889999999999999988652   23358999999986 5777765


Q ss_pred             ccCCCCCCC-----CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC
Q 047629          410 HPKSKSSSS-----SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND  484 (615)
Q Consensus       410 ~~~~~~~~~-----~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~  484 (615)
                      .........     .......++..++.++.|+..||.++|+.|   +.-+-|.+++||++.+.+++|+..|.......+
T Consensus       370 F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssG---LAck~L~~~kIlv~G~~RIriS~C~i~Dvl~~d  446 (655)
T KOG3741|consen  370 FANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSG---LACKTLDLKKILVTGKMRIRISGCGIMDVLQED  446 (655)
T ss_pred             ccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhcC---ceeecccHhHeEeeCcceEEEecccceeeecCC
Confidence            543322100     112234778899999999999999999998   888999999999999999999988887655433


Q ss_pred             C------CCcccchhHHHHHHHHHcCCCC
Q 047629          485 V------MPKFDVFAFGVVLLELLSGKKA  507 (615)
Q Consensus       485 ~------~~k~DV~SfGvvl~ElltG~~p  507 (615)
                      -      -.+-|.=.||.+++-|.||..-
T Consensus       447 ~~~~le~~Qq~D~~~lG~ll~aLAt~~~n  475 (655)
T KOG3741|consen  447 PTEPLESQQQNDLRDLGLLLLALATGTEN  475 (655)
T ss_pred             CCcchhHHhhhhHHHHHHHHHHHhhcccc
Confidence            2      2467999999999999999765

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.80  E-value=8.5e-08  Score=92.38  Aligned_cols=97  Identities=16%  Similarity=0.193  Sum_probs=71.5

Q ss_pred             HHHHHHHhcCC--CCcccEEEEEEcCCCcEEEEEeecCCCCHHH-hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHH
Q 047629          366 EELRILQRINH--ANLVKLMGVSSDSQGNRFLVYEYAENGSLDK-WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQ  442 (615)
Q Consensus       366 ~Ei~~l~~l~H--~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~-~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~  442 (615)
                      +|...|.+++.  -++-+.+++     ...+|||||+.++.+.. .|+..           .++..+...+..+++.+|.
T Consensus        75 kE~r~L~rl~~~Gv~vP~pi~~-----~~~~lvME~Ig~~~~~~~~Lkd~-----------~~~~~~~~~i~~~i~~~l~  138 (197)
T cd05146          75 KEMHNLKRMQKAGIPCPEVVVL-----KKHVLVMSFIGDDQVPAPKLKDA-----------KLNDEEMKNAYYQVLSMMK  138 (197)
T ss_pred             HHHHHHHHHHHcCCCCCeEEEe-----cCCEEEEEEcCCCCccchhhhcc-----------ccCHHHHHHHHHHHHHHHH
Confidence            79999999854  355566654     14589999997654422 22211           1445566778899999999


Q ss_pred             HH-HhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC
Q 047629          443 YM-HEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT  482 (615)
Q Consensus       443 yL-H~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~  482 (615)
                      .| |..+   ++|+||++.|||++ ++.+.+.|||.+....
T Consensus       139 ~l~H~~g---lVHGDLs~~NIL~~-~~~v~iIDF~qav~~~  175 (197)
T cd05146         139 QLYKECN---LVHADLSEYNMLWH-DGKVWFIDVSQSVEPT  175 (197)
T ss_pred             HHHHhCC---eecCCCCHHHEEEE-CCcEEEEECCCceeCC
Confidence            99 7777   99999999999997 4679999999876554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.78  E-value=1.3e-07  Score=96.08  Aligned_cols=128  Identities=18%  Similarity=0.220  Sum_probs=96.4

Q ss_pred             cceEEEEEECCeEEEEEEcc--------H----------HHHHHHHHHHhcCCCCc--ccEEEEEEcC----CCcEEEEE
Q 047629          342 GKSVYRATIDGKVLAVKKIK--------E----------DVTEELRILQRINHANL--VKLMGVSSDS----QGNRFLVY  397 (615)
Q Consensus       342 G~~Vy~~~~~g~~vAvK~~~--------~----------~~~~Ei~~l~~l~H~ni--v~l~g~~~~~----~~~~~lV~  397 (615)
                      |+.|++..++|+.+.||+..        +          .+.+|...+.++...+|  .+.+++....    ...-+||+
T Consensus        35 ~rrvvr~~~~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~~~s~LVt  114 (268)
T PRK15123         35 GRRTLRFELAGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPATRTSFIIT  114 (268)
T ss_pred             CceEEEEEECCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCccceeEEEE
Confidence            34577888899999999652        1          36789999988854443  4555554322    12468999


Q ss_pred             eecCCC-CHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC-------CCc
Q 047629          398 EYAENG-SLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS-------RFK  469 (615)
Q Consensus       398 E~~~~G-sL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-------~~~  469 (615)
                      |++++- +|.+++......        ..+...+..++.+++..+.-||+.+   |+|+|++++|||++.       +..
T Consensus       115 e~l~~~~sL~~~~~~~~~~--------~~~~~~~~~ll~~la~~i~~LH~~G---i~HgDL~~~NiLl~~~~~~~~~~~~  183 (268)
T PRK15123        115 EDLAPTISLEDYCADWATN--------PPDPRLKRMLIKRVATMVRDMHAAG---INHRDCYICHFLLHLPFPGREEDLK  183 (268)
T ss_pred             eeCCCCccHHHHHHhhccc--------CCCHHHHHHHHHHHHHHHHHHHHCc---CccCCCChhhEEEeccccCCCCCce
Confidence            999876 799988532111        1445667789999999999999999   999999999999975       478


Q ss_pred             EEEeecCCCCC
Q 047629          470 AKIANFSLAAP  480 (615)
Q Consensus       470 ~kl~DFGla~~  480 (615)
                      +.+.||+.++.
T Consensus       184 ~~LIDl~r~~~  194 (268)
T PRK15123        184 LSVIDLHRAQI  194 (268)
T ss_pred             EEEEECCcccc
Confidence            99999998854

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.77  E-value=8.1e-10  Score=124.11  Aligned_cols=184  Identities=26%  Similarity=0.369  Sum_probs=130.4

Q ss_pred             HHHHHHHhcC-CCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh-ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHH
Q 047629          366 EELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL-HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQY  443 (615)
Q Consensus       366 ~Ei~~l~~l~-H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L-~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~y  443 (615)
                      .|..+-..+. |+|++++++...+.+ ..+++.||..+|++...+ +....         ..+-...-.+..|+..++.|
T Consensus        69 ~e~~~~~~~s~h~n~~~~~~~~~~~~-~~~~~~~~s~g~~~f~~i~~~~~~---------~~~~~~~~~~~~ql~s~l~~  138 (601)
T KOG0590|consen   69 TETDIQKKLSKHSNTVHMIEPSSSPR-SYLLSLSYSDGGSLFSKISHPDST---------GTSSSSASRYLPQLNSGLSY  138 (601)
T ss_pred             ccccccccccccccccccCCccCCCc-ccccccCcccccccccccccCCcc---------CCCCcchhhhhhhhccCccc
Confidence            4566666665 999999999876543 689999999999998888 33221         13344455678899999999


Q ss_pred             HH-hCCCCCeEecCCCCCceeeCCCC-cEEEeecCCCCCCCC----------------------------CCCCcccchh
Q 047629          444 MH-EHAQPSIVHRDIRTNNIQLDSRF-KAKIANFSLAAPATN----------------------------DVMPKFDVFA  493 (615)
Q Consensus       444 LH-~~~~~~ivHrDlk~~NILld~~~-~~kl~DFGla~~~~~----------------------------~~~~k~DV~S  493 (615)
                      +| +.+   +.|||+||+|.+++..+ ..|++|||+|.....                            ...+..|+||
T Consensus       139 ~H~~~~---~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S  215 (601)
T KOG0590|consen  139 LHPENG---VTHRDIKPSNSLLDESGSALKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWS  215 (601)
T ss_pred             cCcccc---cccCCCCCccchhccCCCcccCCCchhhccccccCCcceeeecccCCCCCCCCcccccchhhcCCCccccc
Confidence            99 777   99999999999999999 999999999854322                            0135689999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC--CCCCChHHHHHHHHHHHHhhhcCCCC
Q 047629          494 FGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL--ESFYPIDGALSLATLARACTMDKSLS  571 (615)
Q Consensus       494 fGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l--~~~~~~~~~~~l~~l~~~C~~~dP~~  571 (615)
                      .|+++.-+++|..|+.........                   ...+++...  .............++...++..+|..
T Consensus       216 ~g~~l~~~~~g~~p~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~l~~~~~~  276 (601)
T KOG0590|consen  216 LGIVLSAMLTGELPWDFPSRKDGR-------------------YSSWKSNKGRFTQLPWNSISDQAHDLLHKILKENPSN  276 (601)
T ss_pred             ccccccccccCCCCcccccccccc-------------------ceeecccccccccCccccCChhhhhcccccccCCchh
Confidence            999999999999998765432211                   001111100  00011122234567778888899999


Q ss_pred             CCCHHHHHHH
Q 047629          572 RPNMAEVVFN  581 (615)
Q Consensus       572 RPsm~ev~~~  581 (615)
                      |.+.+++...
T Consensus       277 r~s~~~~~~d  286 (601)
T KOG0590|consen  277 RLSIEELKLD  286 (601)
T ss_pred             cccccccccc
Confidence            9998877653

>PRK06347 autolysin; Reviewed

Probab=98.76  E-value=1.1e-07  Score=105.45  Aligned_cols=153  Identities=16%  Similarity=0.155  Sum_probs=110.8

Q ss_pred             eeecccCCCCCCHHHHHHhhCCChHHHHhhcCCCCCCCCCCCCccEEeeeeeccCCC----------------ceeeeee
Q 047629           45 VAYFAQSPEFLDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPIICGCTGN----------------QYFANIT  108 (615)
Q Consensus        45 ~~y~~~~~~~~~l~~i~~lf~~~~~~i~~~n~~~~~~~~~~~~~~~~vP~~C~C~~~----------------~~~~~~~  108 (615)
                      ..|+++..  .+|..|+..||++..+|..+|++.  .+.+.+||.+.||..=.=...                .......
T Consensus       406 ~~ytVk~G--DTL~sIA~kygVSv~~L~~~N~l~--s~~L~~Gq~L~IP~~~~~~~~t~~~s~~~~~~k~~s~~~~~~~~  481 (592)
T PRK06347        406 KVYTVVKG--DSLWRIANNNKVTIANLKSWNNLK--SDFIYPGQKLKVSAGSTSNTNTSKPSTNTNTSKPSTNTNTNAKV  481 (592)
T ss_pred             eeEEecCC--CCHHHHHHHhCCCHHHHHHHhCCC--cceeccCcEEEEecCCccccccccccccccccccccccccccee
Confidence            46787654  599999999999999999999875  357999999999963100000                0012346


Q ss_pred             EEeecCCchhhhhhhhcCCcchHHHHHHhCCCCCCCCcCCCcEEEEEeeccCCCCCC----CCCC-eeEEEEEecCCCCc
Q 047629          109 YQIKKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFPLFCKCPSKTN----MEDG-IENLITYVWQPGDD  183 (615)
Q Consensus       109 y~v~~gdt~~~ia~~~~~~L~t~~~~~~~n~~~~~~~l~~G~~~~vpl~c~C~~~~~----~s~~-~~~l~ty~~~~gd~  183 (615)
                      |+|++|||++.||..++  + +..++...|+. ..+.|.+|++|.+|....-.....    .... ..-...|.|+.||+
T Consensus       482 YtVk~GDTL~sIAkkyg--V-Sv~~L~~~N~l-~s~~L~~GQ~L~Ip~~~~~s~~~t~~~s~~~~~~~~~~~Y~Vk~GDT  557 (592)
T PRK06347        482 YTVAKGDSLWRIANNNK--V-TIANLKSWNNL-KSDFIYPGQKLKVSAGSTTNNTNTAKPSTNKPSNSTVKTYTVKKGDS  557 (592)
T ss_pred             eeecCCCCHHHHHHHHC--C-CHHHHHHhcCC-CcccccCCcEEEEecCcccccccccCCccCCccCccceeeecCCCCc
Confidence            99999999999997653  3 34677888884 456899999999997542110000    0000 01135799999999


Q ss_pred             hhHHHHHhcCChhhHhhhcccc
Q 047629          184 VSQVGAKLNASSAAIETENEYR  205 (615)
Q Consensus       184 ~~~ia~~F~~s~~~i~~~n~~~  205 (615)
                      +..||.+||++...+...|++.
T Consensus       558 L~sIA~KygvSv~~L~~~N~L~  579 (592)
T PRK06347        558 LWAISRQYKTTVDNIKAWNKLT  579 (592)
T ss_pred             HHHHHHHhCCCHHHHHHhcCCC
Confidence            9999999999999999999873

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.75  E-value=1.2e-07  Score=88.80  Aligned_cols=129  Identities=25%  Similarity=0.291  Sum_probs=93.1

Q ss_pred             eEEEEEECCeEEEEEEc-c--------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          344 SVYRATIDGKVLAVKKI-K--------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       344 ~Vy~~~~~g~~vAvK~~-~--------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      .+|.+.+-|..+.+|.- +              ....+|..++.+++--.|..-.=+..+.+ ...|+|||+++-.|.+.
T Consensus        11 ~i~~~~~~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~-~~~I~me~I~G~~lkd~   89 (204)
T COG3642          11 IIYLTDFLGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPD-NGLIVMEYIEGELLKDA   89 (204)
T ss_pred             eEEeeeccCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCEEEEEEeCChhHHHH
Confidence            56777666656666632 1              22457999999986555443333334443 57899999999888888


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCCCCCc
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPK  488 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~k  488 (615)
                      +...                 +..++..+-.-+.-||..+   |+|+||.++||++..+. +.+.||||+......-...
T Consensus        90 l~~~-----------------~~~~~r~vG~~vg~lH~~g---ivHGDLTtsNiIl~~~~-i~~IDfGLg~~s~~~Ed~a  148 (204)
T COG3642          90 LEEA-----------------RPDLLREVGRLVGKLHKAG---IVHGDLTTSNIILSGGR-IYFIDFGLGEFSDEVEDKA  148 (204)
T ss_pred             HHhc-----------------chHHHHHHHHHHHHHHhcC---eecCCCccceEEEeCCc-EEEEECCcccccccHHhhh
Confidence            8653                 2345667777788899998   99999999999997764 9999999998765555567


Q ss_pred             ccchhH
Q 047629          489 FDVFAF  494 (615)
Q Consensus       489 ~DV~Sf  494 (615)
                      +|+|-|
T Consensus       149 VDl~Vl  154 (204)
T COG3642         149 VDLHVL  154 (204)
T ss_pred             chHHHH
Confidence            788754

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.73  E-value=1.3e-07  Score=88.03  Aligned_cols=140  Identities=16%  Similarity=0.234  Sum_probs=99.8

Q ss_pred             eEEEEEECCeEEEEEEcc---------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCC-CCHHH
Q 047629          344 SVYRATIDGKVLAVKKIK---------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAEN-GSLDK  407 (615)
Q Consensus       344 ~Vy~~~~~g~~vAvK~~~---------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~-GsL~~  407 (615)
                      .|+++.+.|+...||.--               +...+|...|.+++--.|.--.=++.+.. .-.|+|||+++ -++.+
T Consensus        22 rv~~~~~~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~-~~~i~ME~~~g~~~vk~  100 (229)
T KOG3087|consen   22 RVPRGSFSGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTY-GGQIYMEFIDGASTVKD  100 (229)
T ss_pred             eEeeeccCCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecC-CCeEEEEeccchhHHHH
Confidence            799999999998888431               23567999999886555542222333333 45789999975 37888


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC---cEEEeecCCCCCCCCC
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF---KAKIANFSLAAPATND  484 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~---~~kl~DFGla~~~~~~  484 (615)
                      |+...-...        -.-.....++..|-.-+.-||...   |+|+||..+||+|..++   .+.+.|||++......
T Consensus       101 ~i~~~~~~~--------~~d~~~~~~~~~iG~~igklH~nd---iiHGDLTTSNill~~~~~~~~~~lIdfgls~~s~~~  169 (229)
T KOG3087|consen  101 FILSTMEDE--------SEDEGLAELARRIGELIGKLHDND---IIHGDLTTSNILLRSDGNQITPILIDFGLSSVSRLP  169 (229)
T ss_pred             HHHHHccCc--------ccchhHHHHHHHHHHHHHHhhhCC---eecccccccceEEecCCCcCceEEEeecchhcccCc
Confidence            886643321        112223677888888999999998   99999999999996653   4689999998776555


Q ss_pred             CCCcccchhHH
Q 047629          485 VMPKFDVFAFG  495 (615)
Q Consensus       485 ~~~k~DV~SfG  495 (615)
                      -...+|.|=|-
T Consensus       170 EDKgVDLYVlE  180 (229)
T KOG3087|consen  170 EDKGVDLYVLE  180 (229)
T ss_pred             ccccceeeeeh
Confidence            56678888543

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=98.69  E-value=3.7e-07  Score=99.86  Aligned_cols=137  Identities=18%  Similarity=0.338  Sum_probs=105.3

Q ss_pred             CCeEEEEEEccH-------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCccc
Q 047629          351 DGKVLAVKKIKE-------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVI  423 (615)
Q Consensus       351 ~g~~vAvK~~~~-------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~  423 (615)
                      ++.+|.|...+.       ...+-++-|+.++||||++++.... .++.+|||+|-+.  .|..++++            
T Consensus        36 ~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e-~~~~~ylvTErV~--Pl~~~lk~------------  100 (690)
T KOG1243|consen   36 DGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTE-EEGTLYLVTERVR--PLETVLKE------------  100 (690)
T ss_pred             cCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhc-ccCceEEEeeccc--cHHHHHHH------------
Confidence            567777766542       2456678899999999999999754 5668999999884  57777764            


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC-------------CC----
Q 047629          424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND-------------VM----  486 (615)
Q Consensus       424 ~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~-------------~~----  486 (615)
                       +.-....--+.||+.||.|||+.+  .++|++|.-..|+++..|.-||++|-+.......             ..    
T Consensus       101 -l~~~~v~~Gl~qIl~AL~FL~~d~--~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~  177 (690)
T KOG1243|consen  101 -LGKEEVCLGLFQILAALSFLNDDC--NLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNAPAKSLYLIESFDDPEEI  177 (690)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHhccC--CeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCcccccchhhhcccChhhc
Confidence             333344556789999999999776  5999999999999999999999999765322110             11    


Q ss_pred             Cc----ccchhHHHHHHHHHcCC
Q 047629          487 PK----FDVFAFGVVLLELLSGK  505 (615)
Q Consensus       487 ~k----~DV~SfGvvl~ElltG~  505 (615)
                      .+    .|.|-||++++|++.|.
T Consensus       178 ~~s~~s~D~~~Lg~li~el~ng~  200 (690)
T KOG1243|consen  178 DPSEWSIDSWGLGCLIEELFNGS  200 (690)
T ss_pred             CccccchhhhhHHHHHHHHhCcc
Confidence            12    49999999999999993

>PRK06347 autolysin; Reviewed

Probab=98.69  E-value=2.3e-07  Score=102.89  Aligned_cols=169  Identities=16%  Similarity=0.138  Sum_probs=118.5

Q ss_pred             eeeecccCCCCCCHHHHHHhhCCChHHHHhhcCCCCCCCCCCCCccEEeeeeeccCC-----------------Cceeee
Q 047629           44 YVAYFAQSPEFLDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPIICGCTG-----------------NQYFAN  106 (615)
Q Consensus        44 ~~~y~~~~~~~~~l~~i~~lf~~~~~~i~~~n~~~~~~~~~~~~~~~~vP~~C~C~~-----------------~~~~~~  106 (615)
                      ...|.++.+  .+|..||..||+++.+|..+|++.  .+.|.+||.|+||..=.=..                 ......
T Consensus       330 ~~~Y~V~sG--DTL~~IA~rygvSv~eL~~~N~l~--~d~L~~Gq~L~VP~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~  405 (592)
T PRK06347        330 AKIYTVVKG--DSLWRIANNHKVTVANLKAWNNLK--SDFIYPGQKLKVSAGSTTSDTNTSKPSTGTSTSKPSTGTSTNA  405 (592)
T ss_pred             ceEEEeCCC--CCHHHHHHHhCCCHHHHHHHhCCC--ccccccCcEEEEeccccccccccccccccccccccccccccCc
Confidence            446888654  599999999999999999999964  46899999999997300000                 000123


Q ss_pred             eeEEeecCCchhhhhhhhcCCcchHHHHHHhCCCCCCCCcCCCcEEEEEeecc------CCCCC-CC----CCCeeEEEE
Q 047629          107 ITYQIKKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFPLFCK------CPSKT-NM----EDGIENLIT  175 (615)
Q Consensus       107 ~~y~v~~gdt~~~ia~~~~~~L~t~~~~~~~n~~~~~~~l~~G~~~~vpl~c~------C~~~~-~~----s~~~~~l~t  175 (615)
                      ..|+|++||+++.||...+-.   ..++...|+ +..+.+.+|+.+.+|..-.      .+... ..    +....-...
T Consensus       406 ~~ytVk~GDTL~sIA~kygVS---v~~L~~~N~-l~s~~L~~Gq~L~IP~~~~~~~~t~~~s~~~~~~k~~s~~~~~~~~  481 (592)
T PRK06347        406 KVYTVVKGDSLWRIANNNKVT---IANLKSWNN-LKSDFIYPGQKLKVSAGSTSNTNTSKPSTNTNTSKPSTNTNTNAKV  481 (592)
T ss_pred             eeEEecCCCCHHHHHHHhCCC---HHHHHHHhC-CCcceeccCcEEEEecCCccccccccccccccccccccccccccee
Confidence            479999999999999766533   356677786 4456799999999996421      11000 00    000111257


Q ss_pred             EecCCCCchhHHHHHhcCChhhHhhhccccCccccCccceecccc
Q 047629          176 YVWQPGDDVSQVGAKLNASSAAIETENEYRNFSEAVSLPVLIPVS  220 (615)
Q Consensus       176 y~~~~gd~~~~ia~~F~~s~~~i~~~n~~~~~~~~~~~~~l~p~~  220 (615)
                      |.|+.||++..||.+||++...+...|++..-...+|..+.||..
T Consensus       482 YtVk~GDTL~sIAkkygVSv~~L~~~N~l~s~~L~~GQ~L~Ip~~  526 (592)
T PRK06347        482 YTVAKGDSLWRIANNNKVTIANLKSWNNLKSDFIYPGQKLKVSAG  526 (592)
T ss_pred             eeecCCCCHHHHHHHHCCCHHHHHHhcCCCcccccCCcEEEEecC
Confidence            999999999999999999999999999874333445666667653

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.68  E-value=2.6e-07  Score=90.71  Aligned_cols=128  Identities=24%  Similarity=0.378  Sum_probs=97.0

Q ss_pred             ceEEEEEEC-CeEEEEEEccH--------HHHHHHHHHHhcCCC--CcccEEEEEEcCC--CcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATID-GKVLAVKKIKE--------DVTEELRILQRINHA--NLVKLMGVSSDSQ--GNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~~-g~~vAvK~~~~--------~~~~Ei~~l~~l~H~--niv~l~g~~~~~~--~~~~lV~E~~~~GsL~~~L  409 (615)
                      ..+|+.... |+.+++|....        .+..|.+++..+++.  ++.+++.+.....  +..++||||++++++.+.+
T Consensus        12 n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~G~~l~~~~   91 (223)
T cd05154          12 NLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVDGRVLRDRL   91 (223)
T ss_pred             ceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeCCEecCCCC
Confidence            479998885 48899998652        467899999999764  4567787754321  2568999999998887765


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCC-----------------------------------------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA-----------------------------------------  448 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----------------------------------------  448 (615)
                      .. .          .++..++..++.++++.|.+||+..                                         
T Consensus        92 ~~-~----------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (223)
T cd05154          92 LR-P----------ELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMERL  160 (223)
T ss_pred             CC-C----------CCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            32 1          2677788888888888888888521                                         


Q ss_pred             ------------CCCeEecCCCCCceeeCC--CCcEEEeecCCCCCC
Q 047629          449 ------------QPSIVHRDIRTNNIQLDS--RFKAKIANFSLAAPA  481 (615)
Q Consensus       449 ------------~~~ivHrDlk~~NILld~--~~~~kl~DFGla~~~  481 (615)
                                  ...++|+|+++.||+++.  +..+.+.||+.+...
T Consensus       161 ~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~g  207 (223)
T cd05154         161 LRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATLG  207 (223)
T ss_pred             HHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEeccccccC
Confidence                        245899999999999998  566899999987654

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.59  E-value=3.5e-08  Score=106.62  Aligned_cols=203  Identities=23%  Similarity=0.297  Sum_probs=141.0

Q ss_pred             ceEEEEEE----CCeEEEEEEccH---------HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI----DGKVLAVKKIKE---------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~----~g~~vAvK~~~~---------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      +.||.+..    ++..+|+|+-+.         .-.+|+....++ .|+|.++....+.+ .+..++-+|++. .+|.++
T Consensus       130 ~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~-~~~lfiqtE~~~-~sl~~~  207 (524)
T KOG0601|consen  130 GSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEG-SGILFIQTELCG-ESLQSY  207 (524)
T ss_pred             ceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCccccc-CCcceeeecccc-chhHHh
Confidence            57887765    578899998431         234677777777 49999997777654 457888899885 699999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHH----HHHHHHhCCCCCeEecCCCCCceeeCCC-CcEEEeecCCCCCCCC
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVAN----GLQYMHEHAQPSIVHRDIRTNNIQLDSR-FKAKIANFSLAAPATN  483 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~----gL~yLH~~~~~~ivHrDlk~~NILld~~-~~~kl~DFGla~~~~~  483 (615)
                      .+....         .++....+....+...    ||.++|+..   ++|-|+||.||++..+ ...+++|||+......
T Consensus       208 ~~~~~~---------~~p~~~l~~~~~~~~~~~~~al~~~hs~~---~~~~~~kp~~i~~~~~~~s~~~~df~~v~~i~~  275 (524)
T KOG0601|consen  208 CHTPCN---------FLPDNLLWNSLRDWLSRDVTALSHLHSNN---IVHDDLKPANIFTTSDWTSCKLTDFGLVSKISD  275 (524)
T ss_pred             hhcccc---------cCCchhhhhHHhhhhhcccccccccCCCc---ccccccchhheecccccceeecCCcceeEEccC
Confidence            886543         2444455555555556    999999987   9999999999999999 8899999998754321


Q ss_pred             ---------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHH
Q 047629          484 ---------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREER  536 (615)
Q Consensus       484 ---------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  536 (615)
                                                 -++.+.|+||+|.+..|..+|..........    .|...+..+         
T Consensus       276 ~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~----~W~~~r~~~---------  342 (524)
T KOG0601|consen  276 GNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNS----SWSQLRQGY---------  342 (524)
T ss_pred             CccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCC----Ccccccccc---------
Confidence                                       1346789999999999999987655433110    132222111         


Q ss_pred             HhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          537 LRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       537 ~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                              +..++...-..++......+++.+|..|++.+.+..
T Consensus       343 --------ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~  378 (524)
T KOG0601|consen  343 --------IPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTA  378 (524)
T ss_pred             --------CchhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhc
Confidence                    111122222223455888999999999998876654

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.54  E-value=5.8e-07  Score=86.19  Aligned_cols=118  Identities=27%  Similarity=0.372  Sum_probs=77.6

Q ss_pred             eEEEEEE-CCeEEEEEEccH---------------------------------HHHHHHHHHHhcCCCC--cccEEEEEE
Q 047629          344 SVYRATI-DGKVLAVKKIKE---------------------------------DVTEELRILQRINHAN--LVKLMGVSS  387 (615)
Q Consensus       344 ~Vy~~~~-~g~~vAvK~~~~---------------------------------~~~~Ei~~l~~l~H~n--iv~l~g~~~  387 (615)
                      .||.|.. +|..+|||..+.                                 ...+|.+.|.++...+  +-+.+++. 
T Consensus         1 ~Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~~-   79 (188)
T PF01163_consen    1 DVYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDYN-   79 (188)
T ss_dssp             EEEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEEE-
T ss_pred             CEEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEEe-
Confidence            3899987 789999997640                                 1357999999997764  45666542 


Q ss_pred             cCCCcEEEEEeecC--CCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHH-HHhCCCCCeEecCCCCCceee
Q 047629          388 DSQGNRFLVYEYAE--NGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQY-MHEHAQPSIVHRDIRTNNIQL  464 (615)
Q Consensus       388 ~~~~~~~lV~E~~~--~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~y-LH~~~~~~ivHrDlk~~NILl  464 (615)
                          ...|||||++  +..+.. |....           ++......++.++...+.. +|..+   ++|+||.+.|||+
T Consensus        80 ----~~~ivME~I~~~G~~~~~-l~~~~-----------~~~~~~~~~~~~il~~~~~~~~~~g---ivHGDLs~~NIlv  140 (188)
T PF01163_consen   80 ----RNVIVMEYIGEDGVPLPR-LKDVD-----------LSPEEPKELLEEILEEIIKMLHKAG---IVHGDLSEYNILV  140 (188)
T ss_dssp             ----TTEEEEE--EETTEEGGC-HHHCG-----------GGGSTHHHHHHHHHHHHHHHHHCTT---EEESS-STTSEEE
T ss_pred             ----CCEEEEEecCCCccchhh-HHhcc-----------ccchhHHHHHHHHHHHHHHHHHhcC---ceecCCChhhEEe
Confidence                2479999998  444443 32211           1123345667777776666 46777   9999999999999


Q ss_pred             CCCCcEEEeecCCCCCCC
Q 047629          465 DSRFKAKIANFSLAAPAT  482 (615)
Q Consensus       465 d~~~~~kl~DFGla~~~~  482 (615)
                      +++ .+.+.|||.+....
T Consensus       141 ~~~-~~~iIDf~qav~~~  157 (188)
T PF01163_consen  141 DDG-KVYIIDFGQAVDSS  157 (188)
T ss_dssp             ETT-CEEE--GTTEEETT
T ss_pred             ecc-eEEEEecCcceecC
Confidence            988 99999999876543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.52  E-value=6.4e-08  Score=104.65  Aligned_cols=212  Identities=21%  Similarity=0.302  Sum_probs=143.3

Q ss_pred             cccccccccc----ceEEEEEE---CCeEEEEEEccHH---H------HHHHHHHHhc-CCCCcccEEEEEEcCCCcEEE
Q 047629          333 MNLSEHYSIG----KSVYRATI---DGKVLAVKKIKED---V------TEELRILQRI-NHANLVKLMGVSSDSQGNRFL  395 (615)
Q Consensus       333 ~~~~~~~~iG----~~Vy~~~~---~g~~vAvK~~~~~---~------~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~l  395 (615)
                      ..|.+...+|    ..||+...   ++..+++|.+.+.   +      ..|+-+...+ .|.++++....+...+ ..++
T Consensus       265 ~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r-~~~i  343 (524)
T KOG0601|consen  265 TDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLR-QGYI  343 (524)
T ss_pred             CCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccccc-cccC
Confidence            4455555555    24555544   5678899887642   1      2455555555 4777777655444333 5779


Q ss_pred             EEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC-CcEEEee
Q 047629          396 VYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR-FKAKIAN  474 (615)
Q Consensus       396 V~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-~~~kl~D  474 (615)
                      -.||++++++...+.-..          .++...++++..+++.++.++|+..   ++|+|+||+||++..+ +..+++|
T Consensus       344 p~e~~~~~s~~l~~~~~~----------~~d~~~~~~~~~q~~~~l~~i~s~~---~~~~d~~psni~i~~~~~~~~~~~  410 (524)
T KOG0601|consen  344 PLEFCEGGSSSLRSVTSQ----------MLDEDPRLRLTAQILTALNVIHSKL---FVHLDVKPSNILISNDGFFSKLGD  410 (524)
T ss_pred             chhhhcCcchhhhhHHHH----------hcCcchhhhhHHHHHhccccccchh---hhcccccccceeeccchhhhhccc
Confidence            999999999887763221          3778888999999999999999887   9999999999999886 8889999


Q ss_pred             cCCCCCCC----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHH
Q 047629          475 FSLAAPAT----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEK  532 (615)
Q Consensus       475 FGla~~~~----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~  532 (615)
                      ||.+..+.                      .....+.|+||||.-+.|.++|..-.....+      |..+         
T Consensus       411 ~~~~t~~~~~~~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~~~------~~~i---------  475 (524)
T KOG0601|consen  411 FGCWTRLAFSSGVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESGVQ------SLTI---------  475 (524)
T ss_pred             cccccccceecccccccccccccchhhccccccccccccccccccccccccCcccCccccc------ceee---------
Confidence            99875321                      1134589999999999999998754332211      1100         


Q ss_pred             HHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          533 REERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       533 ~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                           +.-.-|.+    +..- ..+..+++.....++..||.+.+...+.+
T Consensus       476 -----~~~~~p~~----~~~~-~~~q~~~kv~~~~~~~~~~l~~~l~~~~~  516 (524)
T KOG0601|consen  476 -----RSGDTPNL----PGLK-LQLQVLLKVMINPDRKRRPSAVELSLHSE  516 (524)
T ss_pred             -----ecccccCC----CchH-HhhhhhhhhhcCCccccchhhhhhcccch
Confidence                 00011111    1111 44667788889999999999887766544

>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional

Probab=98.33  E-value=2e-06  Score=93.47  Aligned_cols=104  Identities=26%  Similarity=0.248  Sum_probs=84.9

Q ss_pred             eeecccCCCCCCHHHHHHhhCCChHHHHhhcCCCCCCCCCCCCccEEeeeeeccCC-CceeeeeeEEeecCCchhhhhhh
Q 047629           45 VAYFAQSPEFLDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPIICGCTG-NQYFANITYQIKKGDSYYLVSIT  123 (615)
Q Consensus        45 ~~y~~~~~~~~~l~~i~~lf~~~~~~i~~~n~~~~~~~~~~~~~~~~vP~~C~C~~-~~~~~~~~y~v~~gdt~~~ia~~  123 (615)
                      ..|+++..  .|+..||..||++..+|...|+...  +.+.+||.+.||.+|.|.. .......+|+|++|||++.||..
T Consensus       344 ~~y~Vk~G--DTL~sIA~r~gvs~~~L~~~N~l~~--~~L~~Gq~L~Ip~~~~~~~~~~~~~~~~Y~Vr~GDTL~sIA~k  419 (456)
T PRK10783        344 RSYKVRSG--DTLSGIASRLNVSTKDLQQWNNLRG--SKLKVGQTLTIGAGSSAQRLANNSDSITYRVRKGDSLSSIAKR  419 (456)
T ss_pred             eEEEECCC--CcHHHHHHHHCcCHHHHHHHcCCCc--ccCCCCCEEEecCCcccccccccccceeEEeCCCCCHHHHHHH
Confidence            46888765  5999999999999999999999763  6799999999998887752 22234568999999999999976


Q ss_pred             hcCCcchHHHHHHhCCCCCCCCcCCCcEEEEEe
Q 047629          124 SFENLTNWHAVLEMNPGINPNLLQIGVKVTFPL  156 (615)
Q Consensus       124 ~~~~L~t~~~~~~~n~~~~~~~l~~G~~~~vpl  156 (615)
                      ..   ++..++...|+.... .+.+|+++.+++
T Consensus       420 yg---Vtv~~L~~~N~l~~~-~L~pGq~L~l~v  448 (456)
T PRK10783        420 HG---VNIKDVMRWNSDTAK-NLQPGDKLTLFV  448 (456)
T ss_pred             hC---CCHHHHHHhcCCCCC-cCCCCCEEEEec
Confidence            54   456888999986554 899999998876

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.24  E-value=1.4e-05  Score=78.15  Aligned_cols=106  Identities=22%  Similarity=0.264  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHhcCCC--CcccEEEEEEcCCC---cEEEEEeecCCC-CHHHhhccCCCCCCCCCcccccCHHHHHHHHHH
Q 047629          363 DVTEELRILQRINHA--NLVKLMGVSSDSQG---NRFLVYEYAENG-SLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALD  436 (615)
Q Consensus       363 ~~~~Ei~~l~~l~H~--niv~l~g~~~~~~~---~~~lV~E~~~~G-sL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~  436 (615)
                      ...+|...+.++...  ...+.+++.....+   ..+||+|++++- +|.+++.....          ++......++.+
T Consensus        57 ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~----------~~~~~~~~ll~~  126 (206)
T PF06293_consen   57 RAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQ----------LDPSQRRELLRA  126 (206)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcc----------cchhhHHHHHHH
Confidence            467888888888544  34566676554322   248999999874 79999876332          445567888999


Q ss_pred             HHHHHHHHHhCCCCCeEecCCCCCceeeCCCC---cEEEeecCCCCCC
Q 047629          437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF---KAKIANFSLAAPA  481 (615)
Q Consensus       437 ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~---~~kl~DFGla~~~  481 (615)
                      ++..+.-||+.+   |+|+|++++|||++.+.   .+.+.||+-++..
T Consensus       127 l~~~i~~lH~~g---i~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~  171 (206)
T PF06293_consen  127 LARLIAKLHDAG---IYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFR  171 (206)
T ss_pred             HHHHHHHHHHCc---CCCCCCCcccEEEeCCCCceeEEEEcchhceeC
Confidence            999999999999   99999999999999887   8999999976654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PRK09902 hypothetical protein; Provisional

Probab=98.20  E-value=4.5e-05  Score=73.91  Aligned_cols=125  Identities=19%  Similarity=0.214  Sum_probs=94.9

Q ss_pred             eEEEEEECCeEEEEEEcc-------------HHHHHHHHHHHhcCCCC--cccEEEEEE-cCCC---cEEEEEeecCC-C
Q 047629          344 SVYRATIDGKVLAVKKIK-------------EDVTEELRILQRINHAN--LVKLMGVSS-DSQG---NRFLVYEYAEN-G  403 (615)
Q Consensus       344 ~Vy~~~~~g~~vAvK~~~-------------~~~~~Ei~~l~~l~H~n--iv~l~g~~~-~~~~---~~~lV~E~~~~-G  403 (615)
                      +|++-.++|+.+-+|+-.             ..|.+|+..|.++...+  +.+.. ++. ...+   .-+||+|-+++ -
T Consensus        33 gV~r~~~~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pv-f~~~~k~~~~~rA~LVTe~L~g~~  111 (216)
T PRK09902         33 GVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIV-FGEAVKIEGEWRALLVTEDMAGFI  111 (216)
T ss_pred             eEEEEEeCCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccc-eeeeeccCCceEEEEEEEeCCCCc
Confidence            799988888889999764             34789999999985433  33444 222 1111   25899998764 4


Q ss_pred             CHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCc--EEEeecCCCCC
Q 047629          404 SLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK--AKIANFSLAAP  480 (615)
Q Consensus       404 sL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~--~kl~DFGla~~  480 (615)
                      +|.+++......        ..+..++..+..+++..+.-||+.+   +.|+|+.+.||+++.++.  +++.||--++.
T Consensus       112 ~L~~~l~~~~~~--------~~~~~~k~~il~~va~~ia~LH~~G---v~Hgdly~khIll~~~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        112 SIADWYAQHAVS--------PYSDEVRQAMLKAVALAFKKMHSVN---RQHGCCYVRHIYVKTEGKAEAGFLDLEKSRR  179 (216)
T ss_pred             cHHHHHhcCCcC--------CcchHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHhheeecCCCCeeEEEEEhhccch
Confidence            899998654321        2567778899999999999999998   999999999999986666  99999986554

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=98.02  E-value=3.1e-05  Score=74.52  Aligned_cols=102  Identities=24%  Similarity=0.320  Sum_probs=81.1

Q ss_pred             HHHHHHHHhcCC-CCcccEEEEEEcCCCcEEEEEeecCCCCHHHh---hccCCCCCCCCCcccccCHHHHHHHHHHHHHH
Q 047629          365 TEELRILQRINH-ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW---LHPKSKSSSSSGSVIFLTWSQRLRVALDVANG  440 (615)
Q Consensus       365 ~~Ei~~l~~l~H-~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~---L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~g  440 (615)
                      ..|.-+|+.+++ +++.+++|+|-     .++|.||.+.+++...   +...          ..-+|.+|.+||.++++.
T Consensus         7 ~~E~lll~~l~~~~~~pk~lG~CG-----~~~v~E~~~~~~~~~~~~~l~~~----------~~~~w~~R~~iA~~lL~~   71 (188)
T PF12260_consen    7 NNEPLLLQLLQGSEPFPKLLGSCG-----RFYVVEYVGAGSLYGIYRPLSQF----------LQSPWEQRAKIALQLLEL   71 (188)
T ss_pred             ccHHHHHHHcCCCCCCCCeeeECC-----CEEEEEeecCccccccccccccc----------cccCHHHHHHHHHHHHHH
Confidence            358888999976 68999999982     2679999987766422   1110          126899999999999999


Q ss_pred             HHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC
Q 047629          441 LQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA  481 (615)
Q Consensus       441 L~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  481 (615)
                      +++|++.....+.-.|++++|+-+++++++|+.|...+...
T Consensus        72 l~~l~~~~~~~~~lcDv~~~nfgv~~~~~lk~iDld~v~~~  112 (188)
T PF12260_consen   72 LEELDHGPLGFFYLCDVSPDNFGVNDDGRLKLIDLDDVFVE  112 (188)
T ss_pred             HHHHhcCCCCcEEEeecchHHeEEeCCCcEEEEechhcchh
Confidence            99999865555888999999999999999999999876443

Proteins in this uncharacterised family are described as transmembrane proteins.

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=97.97  E-value=3.9e-05  Score=84.49  Aligned_cols=125  Identities=20%  Similarity=0.207  Sum_probs=83.6

Q ss_pred             ceEEEEEE-CCeEEEEEEccH-----------------------------------------------HHHHHHHHHHhc
Q 047629          343 KSVYRATI-DGKVLAVKKIKE-----------------------------------------------DVTEELRILQRI  374 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~~-----------------------------------------------~~~~Ei~~l~~l  374 (615)
                      +.||+|++ +|+.||||+.+.                                               ++..|..-+.++
T Consensus       139 aQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~EA~n~~~~  218 (517)
T COG0661         139 AQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRREAANAERF  218 (517)
T ss_pred             hhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            47999999 699999998751                                               123455555554


Q ss_pred             ----CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHH-HHHHHhCCC
Q 047629          375 ----NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANG-LQYMHEHAQ  449 (615)
Q Consensus       375 ----~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~g-L~yLH~~~~  449 (615)
                          ++..=+++-.++++-.+...|+|||++|-.+.+...-...         .++-+.   ++..+++. +..+-.++ 
T Consensus       219 ~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~~---------g~d~k~---ia~~~~~~f~~q~~~dg-  285 (517)
T COG0661         219 RENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKSA---------GIDRKE---LAELLVRAFLRQLLRDG-  285 (517)
T ss_pred             HHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHhc---------CCCHHH---HHHHHHHHHHHHHHhcC-
Confidence                3333344445555544567999999999888887432221         144222   33333322 23333355 


Q ss_pred             CCeEecCCCCCceeeCCCCcEEEeecCCCCCCC
Q 047629          450 PSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT  482 (615)
Q Consensus       450 ~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~  482 (615)
                        ++|.|.+|.||+++.+++.-+-|||+.....
T Consensus       286 --ffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~  316 (517)
T COG0661         286 --FFHADPHPGNILVRSDGRIVLLDFGIVGRLD  316 (517)
T ss_pred             --ccccCCCccceEEecCCcEEEEcCcceecCC
Confidence              9999999999999999999999999986653

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=97.86  E-value=9.6e-06  Score=92.78  Aligned_cols=169  Identities=17%  Similarity=0.220  Sum_probs=109.2

Q ss_pred             cCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeE
Q 047629          374 INHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIV  453 (615)
Q Consensus       374 l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~iv  453 (615)
                      .+||-+++..--+. .....+||++|..+|+|...|+....          ++..-.......+...++|||...   +.
T Consensus       861 p~~P~v~~~~~s~~-~rsP~~L~~~~~~~~~~~Skl~~~~~----------~saepaRs~i~~~vqs~e~L~s~~---r~  926 (1205)
T KOG0606|consen  861 PRSPAVVRSFPSFP-CRSPLPLVGHYLNGGDLPSKLHNSGC----------LSAEPARSPILERVQSLESLHSSL---RK  926 (1205)
T ss_pred             CCCCceecccCCCC-CCCCcchhhHHhccCCchhhhhcCCC----------cccccccchhHHHHhhhhccccch---hh
Confidence            34455554332211 12357999999999999999987653          222222233445667899999886   89


Q ss_pred             ecCCCCCceeeCCCCcEEEeecCCCCCCC------C--------------------------------------------
Q 047629          454 HRDIRTNNIQLDSRFKAKIANFSLAAPAT------N--------------------------------------------  483 (615)
Q Consensus       454 HrDlk~~NILld~~~~~kl~DFGla~~~~------~--------------------------------------------  483 (615)
                      |||++|.|+|...++..+++|||......      .                                            
T Consensus       927 h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~ 1006 (1205)
T KOG0606|consen  927 HRDLKPDSLLIAYDGHRPLTDFGTLSKVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEI 1006 (1205)
T ss_pred             cccccccchhhcccCCcccCccccccccccccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcc
Confidence            99999999999999999999998432110      0                                            


Q ss_pred             ----CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC-CCCChHHHHHHH
Q 047629          484 ----DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE-SFYPIDGALSLA  558 (615)
Q Consensus       484 ----~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~-~~~~~~~~~~l~  558 (615)
                          .....+|.|++|++++|.++|..|+.....+..                    ++.+....+. ..-+.+......
T Consensus      1007 ~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~tpq~~--------------------f~ni~~~~~~~p~g~~~~s~~aq 1066 (1205)
T KOG0606|consen 1007 LLGRRHGSAADWWSSGVCLFEVLTGIPPFNAETPQQI--------------------FENILNRDIPWPEGPEEGSYEAQ 1066 (1205)
T ss_pred             cccccCCCcchhhhhhhhhhhhhcCCCCCCCcchhhh--------------------hhccccCCCCCCCCccccChhhh
Confidence                012367999999999999999999976543211                    1111111110 112333444556


Q ss_pred             HHHHHhhhcCCCCCCCHH
Q 047629          559 TLARACTMDKSLSRPNMA  576 (615)
Q Consensus       559 ~l~~~C~~~dP~~RPsm~  576 (615)
                      ++...-+..+|.+|-.|.
T Consensus      1067 ~~~~~ll~~~~~qr~~a~ 1084 (1205)
T KOG0606|consen 1067 DLINRLLTEEPTQRLGAK 1084 (1205)
T ss_pred             hhhhhhhccCchhccCcc
Confidence            677777777888887665

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=97.85  E-value=0.0001  Score=73.32  Aligned_cols=124  Identities=22%  Similarity=0.274  Sum_probs=84.9

Q ss_pred             cccccccc--ceEEEEEE-CCeEEEEEEcc-----------------------------HHHHHHHHHHHhcCCC--Ccc
Q 047629          335 LSEHYSIG--KSVYRATI-DGKVLAVKKIK-----------------------------EDVTEELRILQRINHA--NLV  380 (615)
Q Consensus       335 ~~~~~~iG--~~Vy~~~~-~g~~vAvK~~~-----------------------------~~~~~Ei~~l~~l~H~--niv  380 (615)
                      +....++|  +.||.|.. .|.++|||.=+                             ....+|.+.|.++.-.  .+-
T Consensus        95 iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~VP  174 (304)
T COG0478          95 IGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKVP  174 (304)
T ss_pred             hccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCCCC
Confidence            34445566  37999998 69999999432                             1245799999999655  666


Q ss_pred             cEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCC
Q 047629          381 KLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTN  460 (615)
Q Consensus       381 ~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~  460 (615)
                      +.+++     +...+||||+++-.|...-               ++-...-.++..|..-+.-+-..+   |||+|+..-
T Consensus       175 ~P~~~-----nRHaVvMe~ieG~eL~~~r---------------~~~en~~~il~~il~~~~~~~~~G---iVHGDlSef  231 (304)
T COG0478         175 KPIAW-----NRHAVVMEYIEGVELYRLR---------------LDVENPDEILDKILEEVRKAYRRG---IVHGDLSEF  231 (304)
T ss_pred             Ccccc-----ccceeeeehcccceeeccc---------------CcccCHHHHHHHHHHHHHHHHHcC---ccccCCchh
Confidence            66654     2468999999886554422               111222233344444444444555   999999999


Q ss_pred             ceeeCCCCcEEEeecCCCCCC
Q 047629          461 NIQLDSRFKAKIANFSLAAPA  481 (615)
Q Consensus       461 NILld~~~~~kl~DFGla~~~  481 (615)
                      ||++++++.+.+.||--+...
T Consensus       232 NIlV~~dg~~~vIDwPQ~v~~  252 (304)
T COG0478         232 NILVTEDGDIVVIDWPQAVPI  252 (304)
T ss_pred             eEEEecCCCEEEEeCcccccC
Confidence            999999999999999766544

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=97.75  E-value=1.3e-05  Score=88.37  Aligned_cols=127  Identities=24%  Similarity=0.371  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------------------------------
Q 047629          435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------------------------------  483 (615)
Q Consensus       435 ~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------------------------------  483 (615)
                      .+++.||.|+|.+-  .+||++|.|++|.++.++..|++.|+++.....                               
T Consensus       106 ~~v~dgl~flh~sA--k~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~~  183 (700)
T KOG2137|consen  106 GNVADGLAFLHRSA--KVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLLG  183 (700)
T ss_pred             hcccchhhhhccCc--ceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhcc
Confidence            45569999999865  699999999999999999999999987632211                               


Q ss_pred             -CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHH
Q 047629          484 -DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLAR  562 (615)
Q Consensus       484 -~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~  562 (615)
                       ..++++|+||+||+++-+..|..+.-...+.....  . ...             ...+-. .--+..+.+.++.+=+.
T Consensus       184 ~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~--~-~~~-------------~~~~~~-~~~~s~~~p~el~~~l~  246 (700)
T KOG2137|consen  184 TTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSY--S-FSR-------------NLLNAG-AFGYSNNLPSELRESLK  246 (700)
T ss_pred             ccccccccceeeeeEEEEEecCCcchhhccCCcchh--h-hhh-------------cccccc-cccccccCcHHHHHHHH
Confidence             13468999999999999996555543322211100  0 000             000100 01122344556777788


Q ss_pred             HhhhcCCCCCCCHHHHHH
Q 047629          563 ACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       563 ~C~~~dP~~RPsm~ev~~  580 (615)
                      +.+..++..||++.++..
T Consensus       247 k~l~~~~~~rp~~~~l~~  264 (700)
T KOG2137|consen  247 KLLNGDSAVRPTLDLLLS  264 (700)
T ss_pred             HHhcCCcccCcchhhhhc
Confidence            899999999998877654

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=97.60  E-value=0.0008  Score=67.39  Aligned_cols=145  Identities=15%  Similarity=0.152  Sum_probs=87.5

Q ss_pred             ceEEEEEECCeEEEEEEccH----HHHHHHHHHHhcC-CCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh--------
Q 047629          343 KSVYRATIDGKVLAVKKIKE----DVTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL--------  409 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~~----~~~~Ei~~l~~l~-H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L--------  409 (615)
                      ..||+...++..+.||....    +..+|++++..+. +--+.+++++.... +..++|||++++.+|.+..        
T Consensus        13 ~~v~~~~~~~~~~~vk~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~-~~~~lv~e~i~G~~l~~~~~~~~~~~~   91 (244)
T cd05150          13 ATVYRLDGKNPGLYLKIAPSGPTYELEREAERLRWLAGKLPVPEVIDYGSDD-GRAWLLTSAVPGVPAAALWEELEPERL   91 (244)
T ss_pred             CeEEEEcCCCCcEEEEecCCCcccchHHHHHHHHHHHhcCCCCeEEEEEecC-CccEEEEEeeCCccHhHhhcccCHHHH
Confidence            47898877777888888765    4788999999884 43344777766533 4678999999987776442        


Q ss_pred             -----------ccCCCCCCCCCcccccC--HHHHHHHHH--------------------HHHHHHHHHHh----CCCCCe
Q 047629          410 -----------HPKSKSSSSSGSVIFLT--WSQRLRVAL--------------------DVANGLQYMHE----HAQPSI  452 (615)
Q Consensus       410 -----------~~~~~~~~~~~~~~~l~--~~~~~~i~~--------------------~ia~gL~yLH~----~~~~~i  452 (615)
                                 |.....     .. .+.  +..+.....                    .+...+..|-.    ...+.+
T Consensus        92 ~~~l~~~l~~lH~i~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l  165 (244)
T cd05150          92 VDALAEALRRLHALPVA-----DC-PFDRRLDRRLAEARARVENGLVDEDDFDDERRGWSAEELYAELEATRPAEEDLVV  165 (244)
T ss_pred             HHHHHHHHHHHhcCCcc-----cC-CcchhHHHHHHHHHHHHhcCCcChhhCcHhhcCCCHHHHHHHHHhhCCCcCceEE
Confidence                       111100     00 010  001110000                    01111222211    124569


Q ss_pred             EecCCCCCceeeCCCCcEEEeecCCCCCCCCCCCCcccchhHHHHHHHH
Q 047629          453 VHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLEL  501 (615)
Q Consensus       453 vHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~k~DV~SfGvvl~El  501 (615)
                      +|+|+.+.|||++++....|.||+.+.....       .|-|+.++..+
T Consensus       166 ~HgD~~~~Nil~~~~~~~~iIDwe~a~~gdp-------~~Dla~~~~~~  207 (244)
T cd05150         166 THGDACLPNIIVDPGKFSGFIDLGRLGVADR-------YQDLALAVRSL  207 (244)
T ss_pred             ECCCCCCccEEEeCCcEEEEEEccccccccH-------HHHHHHHHHHh
Confidence            9999999999999987788999997654322       34566655544

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=97.56  E-value=0.0013  Score=64.26  Aligned_cols=115  Identities=17%  Similarity=0.226  Sum_probs=75.9

Q ss_pred             eEEEEEECCeEEEEEEccHH----------------HHHHHHHHHhcCCC---CcccEEEEEEcCC----CcEEEEEeec
Q 047629          344 SVYRATIDGKVLAVKKIKED----------------VTEELRILQRINHA---NLVKLMGVSSDSQ----GNRFLVYEYA  400 (615)
Q Consensus       344 ~Vy~~~~~g~~vAvK~~~~~----------------~~~Ei~~l~~l~H~---niv~l~g~~~~~~----~~~~lV~E~~  400 (615)
                      .|.+-..+|+.+.+|..+..                ..+++..+.+++..   ....++.+.....    ...+++|||+
T Consensus        46 ~ValIei~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl~~ekk~~~~~~~~~ll~EYI  125 (229)
T PF06176_consen   46 YVALIEIDGKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYLAAEKKIFRYTSSYVLLMEYI  125 (229)
T ss_pred             EEEEEEECCcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCccccccceeeeeeeeccceeEEEEEEEEe
Confidence            45555668999999987632                23445545555322   2233333222111    1356899999


Q ss_pred             CCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCC
Q 047629          401 ENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAP  480 (615)
Q Consensus       401 ~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  480 (615)
                      ++-.|.+...              ++.    .++..+...+.-||..|   ++|+|..|+|+++.++ .+++.||+..+.
T Consensus       126 eG~~l~d~~~--------------i~e----~~~~ki~~~ikqlH~~G---~~HGD~hpgNFlv~~~-~i~iID~~~k~~  183 (229)
T PF06176_consen  126 EGVELNDIED--------------IDE----DLAEKIVEAIKQLHKHG---FYHGDPHPGNFLVSNN-GIRIIDTQGKRM  183 (229)
T ss_pred             cCeecccchh--------------cCH----HHHHHHHHHHHHHHHcC---CccCCCCcCcEEEECC-cEEEEECccccc
Confidence            9987766532              221    24456778899999999   9999999999999865 499999987654

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=97.53  E-value=0.00043  Score=76.21  Aligned_cols=126  Identities=21%  Similarity=0.219  Sum_probs=79.5

Q ss_pred             ceEEEEEE-CCeEEEEEEccH--------------------------------------------HHHHHHHHHHh----
Q 047629          343 KSVYRATI-DGKVLAVKKIKE--------------------------------------------DVTEELRILQR----  373 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~~--------------------------------------------~~~~Ei~~l~~----  373 (615)
                      +.||++++ +|+.||||+-+.                                            +|..|.+-..+    
T Consensus       175 aQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA~Nae~~~~~  254 (538)
T KOG1235|consen  175 AQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEAKNAERFREN  254 (538)
T ss_pred             hheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHHHhHHHHHHH
Confidence            48999999 899999997641                                            13344443333    


Q ss_pred             cCCCCc---ccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCC
Q 047629          374 INHANL---VKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQP  450 (615)
Q Consensus       374 l~H~ni---v~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~  450 (615)
                      +.|-+.   |++-.++++......|+||||+|..+.+...-...         .++-..+..-+.+...  +-+-..|  
T Consensus       255 f~~~~~~~~V~VP~Vy~~~st~RVLtME~~~G~~i~Dl~~i~~~---------gi~~~~i~~~l~~~~~--~qIf~~G--  321 (538)
T KOG1235|consen  255 FKDFSLLTYVLVPKVYWDLSTKRVLTMEYVDGIKINDLDAIDKR---------GISPHDILNKLVEAYL--EQIFKTG--  321 (538)
T ss_pred             HHhcccccceeCCeehhhcCcceEEEEEecCCccCCCHHHHHHc---------CCCHHHHHHHHHHHHH--HHHHhcC--
Confidence            356662   23444455544578999999999877655322211         1443433333333221  2222334  


Q ss_pred             CeEecCCCCCceeeCC----CCcEEEeecCCCCCCC
Q 047629          451 SIVHRDIRTNNIQLDS----RFKAKIANFSLAAPAT  482 (615)
Q Consensus       451 ~ivHrDlk~~NILld~----~~~~kl~DFGla~~~~  482 (615)
                       ++|.|-.|.||++..    +.++.+-|||+.+...
T Consensus       322 -ffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is  356 (538)
T KOG1235|consen  322 -FFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVIS  356 (538)
T ss_pred             -CccCCCCCCcEEEecCCCCCccEEEEccccccccc
Confidence             999999999999983    6789999999986653

>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []

Probab=97.33  E-value=0.0002  Score=51.28  Aligned_cols=44  Identities=27%  Similarity=0.540  Sum_probs=34.7

Q ss_pred             EEeecCCchhhhhhhhcCCcchHHHHHHhCCCCCCCCcCCCcEEEEE
Q 047629          109 YQIKKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFP  155 (615)
Q Consensus       109 y~v~~gdt~~~ia~~~~~~L~t~~~~~~~n~~~~~~~l~~G~~~~vp  155 (615)
                      |+|++|||++.||...   -.++.++...|+.++...+.+|+++.+|
T Consensus         1 y~V~~gDtl~~IA~~~---~~~~~~l~~~N~~~~~~~l~~G~~l~iP   44 (44)
T PF01476_consen    1 YTVQPGDTLWSIAKRY---GISVDELMELNPNIDSDNLQPGQKLCIP   44 (44)
T ss_dssp             EEE-TT--HHHHHHHT---TS-HHHHHHHCCTTHGGCGGTTEEEEEC
T ss_pred             CEECcCCcHHHHHhhh---hhhHhHHHHhcCCCCcccCCCCCEEEeC
Confidence            8999999999999765   3457889999988877779999999887

This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=97.22  E-value=0.0058  Score=60.65  Aligned_cols=127  Identities=13%  Similarity=0.158  Sum_probs=72.1

Q ss_pred             eEEEEEECCeEEEEEEcc-----HHHHHHHHHHHhcCCCCc--ccEEEEEEcCCCcEEEEEeecCCCC-HHHh-------
Q 047629          344 SVYRATIDGKVLAVKKIK-----EDVTEELRILQRINHANL--VKLMGVSSDSQGNRFLVYEYAENGS-LDKW-------  408 (615)
Q Consensus       344 ~Vy~~~~~g~~vAvK~~~-----~~~~~Ei~~l~~l~H~ni--v~l~g~~~~~~~~~~lV~E~~~~Gs-L~~~-------  408 (615)
                      .||+.  .|..+++|...     .+..+|.+++..+..-.+  .+.+++..+. +...+|||++++.. +...       
T Consensus        16 ~~y~~--~~~~~VlR~~~~~~~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~-~~~glv~e~i~G~~~~~~~~~~~~~~   92 (226)
T TIGR02172        16 ESYTH--KTGKWMLKLYNPGFDKETIKREFDASRKVFSLGIPTPHPFDLVEDG-GRLGLIYELIVGKRSFSRIISDNPSR   92 (226)
T ss_pred             ceeEe--cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCCCceEEEEecC-CeeeeeeeecCCccchhhhhcCCHHH
Confidence            57873  24456677754     357889999999865444  5667766543 35688999998853 2211       


Q ss_pred             --------------hccCCCCCCCCCcccccC--HHHHHHHHH-------HHHH-HHHHHHhC-CCCCeEecCCCCCcee
Q 047629          409 --------------LHPKSKSSSSSGSVIFLT--WSQRLRVAL-------DVAN-GLQYMHEH-AQPSIVHRDIRTNNIQ  463 (615)
Q Consensus       409 --------------L~~~~~~~~~~~~~~~l~--~~~~~~i~~-------~ia~-gL~yLH~~-~~~~ivHrDlk~~NIL  463 (615)
                                    ||.....    .  ..+.  +........       ++.. ...+|... ..+.++|+|+.|.||+
T Consensus        93 ~~~l~~~la~~l~~lH~~~~~----~--~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~HgD~~~~Nii  166 (226)
T TIGR02172        93 LEEIAKIFAEMAKKLHSTKCD----T--STFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTSTCLHGDFQIGNLI  166 (226)
T ss_pred             HHHHHHHHHHHHHHHhCCCCC----C--CcHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCCceEecCCCCCcEE
Confidence                          2211100    0  0011  000000000       0111 12233222 2345789999999999


Q ss_pred             eCCCCcEEEeecCCCCC
Q 047629          464 LDSRFKAKIANFSLAAP  480 (615)
Q Consensus       464 ld~~~~~kl~DFGla~~  480 (615)
                      +++++ ..+.||+.+..
T Consensus       167 ~~~~~-~~iIDwe~a~~  182 (226)
T TIGR02172       167 TSGKG-TYWIDLGDFGY  182 (226)
T ss_pred             EcCCC-cEEEechhcCc
Confidence            99887 99999997654

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []

Probab=97.14  E-value=0.00039  Score=49.69  Aligned_cols=44  Identities=27%  Similarity=0.376  Sum_probs=33.3

Q ss_pred             ecccCCCCCCHHHHHHhhCCChHHHHhhcCCCCCCCCCCCCccEEee
Q 047629           47 YFAQSPEFLDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVP   93 (615)
Q Consensus        47 y~~~~~~~~~l~~i~~lf~~~~~~i~~~n~~~~~~~~~~~~~~~~vP   93 (615)
                      |+.++.  .|+..||..|+++..+|..+|+....+. +.+||.|+||
T Consensus         1 y~V~~g--Dtl~~IA~~~~~~~~~l~~~N~~~~~~~-l~~G~~l~iP   44 (44)
T PF01476_consen    1 YTVQPG--DTLWSIAKRYGISVDELMELNPNIDSDN-LQPGQKLCIP   44 (44)
T ss_dssp             EEE-TT----HHHHHHHTTS-HHHHHHHCCTTHGGC-GGTTEEEEEC
T ss_pred             CEECcC--CcHHHHHhhhhhhHhHHHHhcCCCCccc-CCCCCEEEeC
Confidence            566655  4999999999999999999994333444 9999999998

This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=96.99  E-value=0.012  Score=57.61  Aligned_cols=132  Identities=23%  Similarity=0.307  Sum_probs=74.8

Q ss_pred             ceEEEEEECCeEEEEEEccH-----HHHHHHHHHHhcCCCC--cccEEEEEEcC--CCcEEEEEeecCCCCHHH------
Q 047629          343 KSVYRATIDGKVLAVKKIKE-----DVTEELRILQRINHAN--LVKLMGVSSDS--QGNRFLVYEYAENGSLDK------  407 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~~-----~~~~Ei~~l~~l~H~n--iv~l~g~~~~~--~~~~~lV~E~~~~GsL~~------  407 (615)
                      ..||+...++..+++|....     .+..|..++..+....  +.+++.++...  .+..+++|+++++..+..      
T Consensus        11 n~~~~v~~~~~~~vlK~~~~~~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~   90 (239)
T PF01636_consen   11 NRVYRVTTDDGRYVLKFYRPPDAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLMEYIPGRPLDDELSPEQ   90 (239)
T ss_dssp             SEEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEEEEESSEEHHHTSTHHH
T ss_pred             eeEEEEEECCcEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEEEEeccccccccccccc
Confidence            46999998778999998853     4678999998885443  45677654322  223689999999888877      


Q ss_pred             ----------h---hccCCCCCCCCCcccccCH-H--------HHHHH------------HHHHHH-HHHHHHh----CC
Q 047629          408 ----------W---LHPKSKSSSSSGSVIFLTW-S--------QRLRV------------ALDVAN-GLQYMHE----HA  448 (615)
Q Consensus       408 ----------~---L~~~~~~~~~~~~~~~l~~-~--------~~~~i------------~~~ia~-gL~yLH~----~~  448 (615)
                                .   |+.......      .+.+ .        .....            ...+.. .+..+++    ..
T Consensus        91 ~~~~~~~~~~~l~~lh~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (239)
T PF01636_consen   91 RPELLRQLGRALAQLHQVPPPFS------PFADWPEWRLEFLRQLESWTARLRASELFDDLEELEERLLQELEALLPKPL  164 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHSHTTCC------CHTHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             cccccccchhhhhhccccccccc------ccccccccccccccccccccccccchhhhhhhHHHHHHHHHHHHhhhccCC
Confidence                      1   111110000      0111 1        00000            111222 3333433    23


Q ss_pred             CCCeEecCCCCCceeeC-CCCcEEEeecCCCCC
Q 047629          449 QPSIVHRDIRTNNIQLD-SRFKAKIANFSLAAP  480 (615)
Q Consensus       449 ~~~ivHrDlk~~NILld-~~~~~kl~DFGla~~  480 (615)
                      ...++|+|+.++|||++ +++++-|.||+.+..
T Consensus       165 ~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~~  197 (239)
T PF01636_consen  165 PPVLIHGDLHPGNILVDPSDGRIGIIDFEDAGW  197 (239)
T ss_dssp             CEEEE-SS-SGGGEEEESSTTEEEE--GTT-EE
T ss_pred             CcEEEEeccccccceeeeccceeEEEecccceE
Confidence            45699999999999999 666668999987654

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>PLN02876 acyl-CoA dehydrogenase

Probab=96.96  E-value=0.011  Score=69.86  Aligned_cols=61  Identities=21%  Similarity=0.443  Sum_probs=42.2

Q ss_pred             eEEEEEECC----eEEEEEEcc--------HHHHHHHHHHHhcC-CCCc--ccEEEEEEcCC--CcEEEEEeecCCCC
Q 047629          344 SVYRATIDG----KVLAVKKIK--------EDVTEELRILQRIN-HANL--VKLMGVSSDSQ--GNRFLVYEYAENGS  404 (615)
Q Consensus       344 ~Vy~~~~~g----~~vAvK~~~--------~~~~~Ei~~l~~l~-H~ni--v~l~g~~~~~~--~~~~lV~E~~~~Gs  404 (615)
                      .+|+-...+    ..+++|+..        ..+.+|.++|+.+. |.++  .+++++|.+..  +..|+||||+++..
T Consensus        53 ~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~flVME~v~G~~  130 (822)
T PLN02876         53 PTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTAFYIMEYLEGRI  130 (822)
T ss_pred             ceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCceEEEEecCCcc
Confidence            466655532    356666642        35789999999995 6665  68888876532  45789999998754

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=96.94  E-value=0.0032  Score=66.08  Aligned_cols=157  Identities=18%  Similarity=0.241  Sum_probs=99.7

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeec---CCC-------------CCC------
Q 047629          424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF---SLA-------------APA------  481 (615)
Q Consensus       424 ~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF---Gla-------------~~~------  481 (615)
                      ...|...++.++.+|.+.+-||+++   .+-+|+.++|+|+.++..+.+.|=   -+.             ...      
T Consensus       113 ~~~w~fllrvaRnlA~aFA~lH~~G---h~vGDVn~~~~lVsd~~~V~LVdsDsfqi~~ng~~~~cpVg~~eftPPElQ~  189 (637)
T COG4248         113 HCAWDFLLRVARNLASAFATLHEHG---HVVGDVNQNSFLVSDDSKVVLVDSDSFQINANGTLHLCPVGVSEFTPPELQT  189 (637)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhcC---CcccccCccceeeecCceEEEEcccceeeccCCceEecccCccccCCHHHhc
Confidence            4789999999999999999999998   889999999999999888888763   221             000      


Q ss_pred             -----CCCCCCcccchhHHHHHHHHHcC-CCCCCCCCCC----hhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCCh
Q 047629          482 -----TNDVMPKFDVFAFGVVLLELLSG-KKATRTTENG----KTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPI  551 (615)
Q Consensus       482 -----~~~~~~k~DV~SfGvvl~ElltG-~~p~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~  551 (615)
                           ..+.+...|-|.+||++++|+.| +.|+.+....    .... -+.....+....   ..-.... |. ..+.|.
T Consensus       190 ~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E-~~Ia~g~f~ya~---~~~~g~~-p~-P~~~P~  263 (637)
T COG4248         190 LPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLE-TDIAHGRFAYAS---DQRRGLK-PP-PRSIPL  263 (637)
T ss_pred             cccccccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcch-hhhhcceeeech---hccCCCC-CC-CCCCCh
Confidence                 11235678999999999999986 8898753211    0000 000000000000   0000000 00 122333


Q ss_pred             H-HHHHHHHHHHHhhhcC--CCCCCCHHHHHHHHHhcccch
Q 047629          552 D-GALSLATLARACTMDK--SLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       552 ~-~~~~l~~l~~~C~~~d--P~~RPsm~ev~~~L~~l~~~~  589 (615)
                      + ....+-.|-..|....  +.-|||++.-+..|..+.++.
T Consensus       264 ~~Lpp~vqAlF~qaF~~~~~~~~RP~a~aW~aAl~al~~~L  304 (637)
T COG4248         264 SMLPPDVQALFQQAFTESGVATPRPTAKAWVAALDALRQQL  304 (637)
T ss_pred             hhcCHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHHHhh
Confidence            2 2335667778888653  567999998888887776553

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=96.81  E-value=0.016  Score=57.47  Aligned_cols=120  Identities=23%  Similarity=0.300  Sum_probs=80.5

Q ss_pred             eEEEEEE-CCeEEEEEEccHH-------------------------------HHHHHHHHHhcC--CCCcccEEEEEEcC
Q 047629          344 SVYRATI-DGKVLAVKKIKED-------------------------------VTEELRILQRIN--HANLVKLMGVSSDS  389 (615)
Q Consensus       344 ~Vy~~~~-~g~~vAvK~~~~~-------------------------------~~~Ei~~l~~l~--H~niv~l~g~~~~~  389 (615)
                      .||+|.- ++..+|||+.+..                               ..+|..-|.++.  +-.+-+-+++.   
T Consensus        63 ~Vy~a~~~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~eAGVrvP~Pi~~~---  139 (268)
T COG1718          63 NVYLAETGDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYEAGVRVPEPIAFR---  139 (268)
T ss_pred             EEEeeccCCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeec---
Confidence            7999886 7899999988521                               135777777774  33344445432   


Q ss_pred             CCcEEEEEeecCCCC-HHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHh-CCCCCeEecCCCCCceeeCCC
Q 047629          390 QGNRFLVYEYAENGS-LDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE-HAQPSIVHRDIRTNNIQLDSR  467 (615)
Q Consensus       390 ~~~~~lV~E~~~~Gs-L~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~ivHrDlk~~NILld~~  467 (615)
                        .-.|||||+.... -.-.|+.           ..+.......+..++.+++.-|-. .+   +||+||..=|||++ +
T Consensus       140 --~nVLvMEfIg~~g~pAP~LkD-----------v~~e~~e~~~~~~~~v~~~~~l~~~a~---LVHgDLSEyNiL~~-~  202 (268)
T COG1718         140 --NNVLVMEFIGDDGLPAPRLKD-----------VPLELEEAEGLYEDVVEYMRRLYKEAG---LVHGDLSEYNILVH-D  202 (268)
T ss_pred             --CCeEEEEeccCCCCCCCCccc-----------CCcCchhHHHHHHHHHHHHHHHHHhcC---cccccchhhheEEE-C
Confidence              2379999996531 1111111           112333456666777788877766 44   99999999999999 8


Q ss_pred             CcEEEeecCCCCCCCC
Q 047629          468 FKAKIANFSLAAPATN  483 (615)
Q Consensus       468 ~~~kl~DFGla~~~~~  483 (615)
                      +.+.+.|||-|....+
T Consensus       203 ~~p~iID~~QaV~~~h  218 (268)
T COG1718         203 GEPYIIDVSQAVTIDH  218 (268)
T ss_pred             CeEEEEECccccccCC
Confidence            8999999998765543

>PRK10593 hypothetical protein; Provisional

Probab=96.71  E-value=0.037  Score=57.32  Aligned_cols=62  Identities=13%  Similarity=0.103  Sum_probs=43.7

Q ss_pred             eEEEEEECCeEEEEEEcc-----HHHHHHHHHHHhcCC---CCcccEEEEEEcC--CCcEEEEEeecCCCCH
Q 047629          344 SVYRATIDGKVLAVKKIK-----EDVTEELRILQRINH---ANLVKLMGVSSDS--QGNRFLVYEYAENGSL  405 (615)
Q Consensus       344 ~Vy~~~~~g~~vAvK~~~-----~~~~~Ei~~l~~l~H---~niv~l~g~~~~~--~~~~~lV~E~~~~GsL  405 (615)
                      .||+-...+..+.+|..+     ..+..|.+.|+.+..   -.+-+++++|...  .+..+||||+++++++
T Consensus        29 ~vy~~~~~~~~~~~k~~~~~~~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~~LVmE~i~G~~~  100 (297)
T PRK10593         29 ALWALYDSQGNPMPLMARSFSTPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPDVLLLERLRGVSV  100 (297)
T ss_pred             eEEEEEcCCCCEEEEEecccccchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCeEEEEeccCCEec
Confidence            688776543345556544     257889999999853   3567888887532  3568999999998765

>TIGR02721 ycfN_thiK thiamine kinase

Probab=96.45  E-value=0.03  Score=56.53  Aligned_cols=140  Identities=16%  Similarity=0.209  Sum_probs=80.3

Q ss_pred             ceEEEEEECCeEEEEEEccH-------HHHHHHHHHHhcCCCCcc-cEEEEEEcCCCcEEEEEeecCCCCHHHh------
Q 047629          343 KSVYRATIDGKVLAVKKIKE-------DVTEELRILQRINHANLV-KLMGVSSDSQGNRFLVYEYAENGSLDKW------  408 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~~-------~~~~Ei~~l~~l~H~niv-~l~g~~~~~~~~~~lV~E~~~~GsL~~~------  408 (615)
                      ..+|+...+|+.+.+|....       +..+|.++++.+....++ ++++..  .   -++||||+++..+...      
T Consensus        10 n~~y~~~~~~~~~vlR~~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~i~~~--~---~~~v~e~i~G~~~~~~~~~~~~   84 (256)
T TIGR02721        10 NRSWRIEHPGISFVWRPQSPVCKALGVDRQREYQILQALSALGLAPKPILVN--E---HWLLVEWLEGEVITLDQFVALD   84 (256)
T ss_pred             CCeEEEEeCCccEEEeeCCcccccccCcHHHHHHHHHHHHhcCCCCceEEEe--C---CEEEEEeccCcccccccccCch
Confidence            36787777787888887542       356899999999655454 444432  2   2689999998665421      


Q ss_pred             -----------hccCCCCCCCCCcccccCHHHH-HHHHHH---------HHHHHHHHHhC-----CCCCeEecCCCCCce
Q 047629          409 -----------LHPKSKSSSSSGSVIFLTWSQR-LRVALD---------VANGLQYMHEH-----AQPSIVHRDIRTNNI  462 (615)
Q Consensus       409 -----------L~~~~~~~~~~~~~~~l~~~~~-~~i~~~---------ia~gL~yLH~~-----~~~~ivHrDlk~~NI  462 (615)
                                 ||......      ..++...+ ..+..+         +..-+..+-..     ..+.++|+|+.+.||
T Consensus        85 ~~~~la~~l~~lH~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~H~Dl~~~Ni  158 (256)
T TIGR02721        85 LLLELAALLHQLHSQPRFG------YPLSLKARIAHYWLQIDPARRTPEWLRLYKQFRSAPEPAPLPLAPLHMDVHAYNL  158 (256)
T ss_pred             hHHHHHHHHHHHhCCCCCC------CCCCHHHHHHHHHHhcccccCChHHHHHHHHHHhccCCCCCCCeeecCCCCcCcE
Confidence                       22221100      01222211 111111         11112222222     123589999999999


Q ss_pred             eeCCCCcEEEeecCCCCCCCCCCCCcccchhHHHHHHHH
Q 047629          463 QLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLEL  501 (615)
Q Consensus       463 Lld~~~~~kl~DFGla~~~~~~~~~k~DV~SfGvvl~El  501 (615)
                      ++++++ +.+.||..+.....       .|-+|.++.+.
T Consensus       159 l~~~~~-~~lIDwE~a~~gdp-------~~DLa~~~~~~  189 (256)
T TIGR02721       159 VVTPQG-LKLIDWEYASDGDI-------ALELAAIIRAN  189 (256)
T ss_pred             EEeCCC-CEEEeccccCcCCH-------HHHHHHHHHhC
Confidence            999876 78999997765432       34556666553

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=96.42  E-value=0.005  Score=72.13  Aligned_cols=175  Identities=18%  Similarity=0.212  Sum_probs=118.2

Q ss_pred             HHHHHHHHhcCCCCcccEEEEEEcCCCc---EEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHH
Q 047629          365 TEELRILQRINHANLVKLMGVSSDSQGN---RFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGL  441 (615)
Q Consensus       365 ~~Ei~~l~~l~H~niv~l~g~~~~~~~~---~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL  441 (615)
                      .-|++.+.++.|+|++.+++|-.+....   ..+..|++..-++...+....          ..+....+.+..+...||
T Consensus       230 E~e~~~l~k~~~~n~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~q~v~----------~i~~~~~r~~~~~~~~GL  299 (1351)
T KOG1035|consen  230 EIELESLSKIAHDNLGGYFVYGLERLFRGIVLDVLQEICSKVELRSLLQSVG----------SIPLETLRILHQKLLEGL  299 (1351)
T ss_pred             HHHHHHHHhhccccccceeEEeehhhcchHHHHHHHhhcCccchHHHHhhcc----------ccCHHHHHHHHHHHhhhH
Confidence            3477788899999999999987643321   224457777777777775543          377788888999999999


Q ss_pred             HHHHhCCCCCeEecCCCCC---ceeeCCCCcEEEe--ecCCCCCCCCC------------------------CCCcccch
Q 047629          442 QYMHEHAQPSIVHRDIRTN---NIQLDSRFKAKIA--NFSLAAPATND------------------------VMPKFDVF  492 (615)
Q Consensus       442 ~yLH~~~~~~ivHrDlk~~---NILld~~~~~kl~--DFGla~~~~~~------------------------~~~k~DV~  492 (615)
                      .|+|+..   ..|.-+..+   +-..+..+....+  ||+..+...+.                        .....|+|
T Consensus       300 ~~~h~~~---l~~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~l~d~~~~~~~~~~~~~~~~e~~~~~~~~~~r~~dL~  376 (1351)
T KOG1035|consen  300 AYLHSLS---LEHVVLSASSSKESTVDGEGVVAISLSDFDSSKPLPDNEKSFSDLLAEIRNADEDLKENTAKKSRLTDLW  376 (1351)
T ss_pred             HHHHHhc---cceeEEecccccccccCccceeecchhhhcccccCCCcccchhhcCccccccccccccccchhhhhhHHH
Confidence            9999985   556555554   4445556666666  88877654221                        11236999


Q ss_pred             hHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCC
Q 047629          493 AFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSR  572 (615)
Q Consensus       493 SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~R  572 (615)
                      .+|..+..+..|..+.....                       ....+++-.    ..    ..+.+....|+..++++|
T Consensus       377 ~lgll~~~~~~~~~i~~~~~-----------------------~~~~~l~~~----~~----~~~~d~~~~~~~~~~~~R  425 (1351)
T KOG1035|consen  377 CLGLLLLQLSQGEDISEKSA-----------------------VPVSLLDVL----ST----SELLDALPKCLDEDSEER  425 (1351)
T ss_pred             HHHHHHhhhhhcCccccccc-----------------------chhhhhccc----cc----hhhhhhhhhhcchhhhhc
Confidence            99999999988865532111                       001111110    01    135677889999999999


Q ss_pred             CCHHHHHHHHH
Q 047629          573 PNMAEVVFNLS  583 (615)
Q Consensus       573 Psm~ev~~~L~  583 (615)
                      ++..+++....
T Consensus       426 l~~~~ll~~~f  436 (1351)
T KOG1035|consen  426 LSALELLTHPF  436 (1351)
T ss_pred             cchhhhhhchh
Confidence            99999998754

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=96.39  E-value=0.084  Score=52.28  Aligned_cols=46  Identities=17%  Similarity=0.238  Sum_probs=36.5

Q ss_pred             CCeEecCCCCCceeeCC-CCcEEEeecCCCCCCCCCCCCcccchhHHHHHHHHH
Q 047629          450 PSIVHRDIRTNNIQLDS-RFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELL  502 (615)
Q Consensus       450 ~~ivHrDlk~~NILld~-~~~~kl~DFGla~~~~~~~~~k~DV~SfGvvl~Ell  502 (615)
                      ..++|+|+.+.|||+++ +..+.+.||..|.....       .|-+|.++.|+.
T Consensus       170 ~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~~~~~-------~~Dla~~~~e~~  216 (235)
T cd05157         170 IVFCHNDLLSGNIIYNEEKNSVKFIDYEYAGYNYR-------AFDIANHFNEWA  216 (235)
T ss_pred             EEEEcCCCCcCcEEEeCCCCCEEEEEcccCCcCch-------heeHHHHHHHHc
Confidence            45999999999999998 57899999987765433       456788888854

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=96.38  E-value=0.029  Score=55.82  Aligned_cols=33  Identities=15%  Similarity=0.285  Sum_probs=26.8

Q ss_pred             CCCeEecCCCCCceeeCCCCcEEEeecCCCCCC
Q 047629          449 QPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA  481 (615)
Q Consensus       449 ~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  481 (615)
                      .+.++|+|+.+.|||++++...-|.||+.+...
T Consensus       163 ~~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~~g  195 (235)
T cd05155         163 PPVWFHGDLAPGNLLVQDGRLSAVIDFGCLGVG  195 (235)
T ss_pred             CceEEeCCCCCCcEEEECCCEEEEEeCcccCcC
Confidence            345999999999999987765679999976543

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=96.27  E-value=0.0072  Score=65.23  Aligned_cols=162  Identities=17%  Similarity=0.218  Sum_probs=88.4

Q ss_pred             HHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHH
Q 047629          364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQY  443 (615)
Q Consensus       364 ~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~y  443 (615)
                      +.....+++.+.|+|+...+.+.........+|+|++. -||.+.+..+...           -      ....+.+   
T Consensus        29 ilgr~~~lktl~~~~l~~yl~~~r~~~~r~IVV~e~~~-~Sled~~~~~~l~-----------~------~s~~~~~---   87 (725)
T KOG1093|consen   29 ILGRFQYLKSLQHDNLCQYLDFSRGKHERVIVVMEHYT-MSLEDILKTGNLK-----------D------ESLLAHG---   87 (725)
T ss_pred             HhhhhHHHHhhcCccceeeEeeecCccceEEEEehhhc-cchHHHHHhcccc-----------h------hhhcccc---
Confidence            44556778889999999999987655445789999995 4999988764311           0      0000111   


Q ss_pred             HHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHH
Q 047629          444 MHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEI  523 (615)
Q Consensus       444 LH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~  523 (615)
                              +.|-+     ++...+   ...|.+     .....+|+||||+|.++.|+.-|..-+....+.+...   .+
T Consensus        88 --------~~~~~-----~~~~td---~~~t~~-----~~~~~pKsdVwsl~~i~~el~L~~~l~~~~~~s~~l~---~i  143 (725)
T KOG1093|consen   88 --------VLHLN-----IIYITD---HFLTKY-----PSPIGPKSDVWSLGFIILELYLGISLEAELTESEYLE---IL  143 (725)
T ss_pred             --------cceeh-----hhhccc---cccccC-----CCCCCcchhhhhHHHHHHHHHHhhHHHHHHHHHHHHH---HH
Confidence                    33321     211111   112222     2223479999999999999999876554332211111   01


Q ss_pred             HHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHH
Q 047629          524 REVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAE  577 (615)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~e  577 (615)
                      ...............+       ..+-.++...++++.+.|.-..|..||...+
T Consensus       144 ~k~~~~d~~~~~~a~e-------~~~~~~~d~~~~~~~~~c~~~~~~ir~l~~~  190 (725)
T KOG1093|consen  144 LKYYTDDQELLSTAME-------HLIQLLADKKRLPLLKKCLWLEPIIRPLPME  190 (725)
T ss_pred             HHhccCchhHHHHHHH-------HHHHHhhhHhHHHHhccCCccccccccchhH
Confidence            1111000000000000       0122344456788889999999988885443

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=96.18  E-value=0.091  Score=50.81  Aligned_cols=105  Identities=25%  Similarity=0.393  Sum_probs=74.2

Q ss_pred             ceEEEEEECCeEEEEEEcc----------------------------HHHHHHHHHHHhcC---CCCc--ccEEEEEEcC
Q 047629          343 KSVYRATIDGKVLAVKKIK----------------------------EDVTEELRILQRIN---HANL--VKLMGVSSDS  389 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~----------------------------~~~~~Ei~~l~~l~---H~ni--v~l~g~~~~~  389 (615)
                      +.||+..++|+.+|+|..+                            ..|..|.....+++   +.++  |+.+||..=.
T Consensus        52 ~~V~kv~I~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~~~e~~~Avkc~Gyl~L~  131 (207)
T PF13095_consen   52 GYVFKVEIDGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEAGREGLWAVKCHGYLLLT  131 (207)
T ss_pred             eEEEEEEECCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhccccCceEEEeeEEEEEc
Confidence            5799999999999999932                            02567888877774   4566  8999986311


Q ss_pred             -----------------CCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCe
Q 047629          390 -----------------QGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSI  452 (615)
Q Consensus       390 -----------------~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~i  452 (615)
                                       .....||.||++...                   .++-.++    .++.+-|..+|..+   |
T Consensus       132 ~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~-------------------~~~~~~~----~~~~~dl~~~~k~g---I  185 (207)
T PF13095_consen  132 EDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP-------------------PLQIRDI----PQMLRDLKILHKLG---I  185 (207)
T ss_pred             hHHHHHHhhcccccCCCCccEEEEEeecCCcc-------------------ccchhHH----HHHHHHHHHHHHCC---e
Confidence                             011357888776533                   0333333    35556678899998   9


Q ss_pred             EecCCCCCceeeCCCCcEEEeecCCC
Q 047629          453 VHRDIRTNNIQLDSRFKAKIANFSLA  478 (615)
Q Consensus       453 vHrDlk~~NILld~~~~~kl~DFGla  478 (615)
                      +-+|+|+.|..     ..||+|||.+
T Consensus       186 ~~~Dv~~~ny~-----~G~lvDfs~~  206 (207)
T PF13095_consen  186 VPRDVKPRNYR-----GGKLVDFSSS  206 (207)
T ss_pred             eeccCcccccc-----CCEEEecccC
Confidence            99999999985     5689999964

>PRK13914 invasion associated secreted endopeptidase; Provisional

Probab=95.98  E-value=0.042  Score=59.49  Aligned_cols=47  Identities=21%  Similarity=0.154  Sum_probs=39.0

Q ss_pred             EEEecCCCCchhHHHHHhcCChhhHhhhccccCccccCccceecccc
Q 047629          174 ITYVWQPGDDVSQVGAKLNASSAAIETENEYRNFSEAVSLPVLIPVS  220 (615)
Q Consensus       174 ~ty~~~~gd~~~~ia~~F~~s~~~i~~~n~~~~~~~~~~~~~l~p~~  220 (615)
                      .+|.|+.||++..||.+|+++...+...|++.+....+|..+.+|..
T Consensus       200 ~tytVq~GDTL~sIAkrYgVtv~eI~~~N~l~s~~L~pGQ~L~Ip~s  246 (481)
T PRK13914        200 TTHAVKSGDTIWALSVKYGVSVQDIMSWNNLSSSSIYVGQKLAIKQT  246 (481)
T ss_pred             eEEEECCCCCHHHHHHHHCCCHHHHHHhcCCCccccCCCCEEEecCC
Confidence            57999999999999999999999999999885444556776777653

>TIGR02899 spore_safA spore coat assembly protein SafA

Probab=95.98  E-value=0.013  Score=41.31  Aligned_cols=40  Identities=20%  Similarity=0.260  Sum_probs=34.6

Q ss_pred             CCHHHHHHhhCCChHHHHhhcCCCCCCCCCCCCccEEeee
Q 047629           55 LDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPI   94 (615)
Q Consensus        55 ~~l~~i~~lf~~~~~~i~~~n~~~~~~~~~~~~~~~~vP~   94 (615)
                      .|+..||..|+++..+|..+|+...+++.+.+|+.+.||.
T Consensus         5 dtl~~IA~~~~~~~~~l~~~N~~~~~~~~~~~g~~l~ip~   44 (44)
T TIGR02899         5 DTLWKIAKKYGVDFDELIQANPQLSNPNLIYPGMKIKIPS   44 (44)
T ss_pred             CCHHHHHHHHCcCHHHHHHHhhcCCCCCCcCCCCEEecCC
Confidence            5999999999999999999998544556788999999983

in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=95.79  E-value=0.084  Score=49.72  Aligned_cols=112  Identities=19%  Similarity=0.254  Sum_probs=74.6

Q ss_pred             ceEEEEEECCeEEEEEEcc-----HHHHHHHHHHHhcCCCCcc-cEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCC
Q 047629          343 KSVYRATIDGKVLAVKKIK-----EDVTEELRILQRINHANLV-KLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSS  416 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~-----~~~~~Ei~~l~~l~H~niv-~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~  416 (615)
                      +.||.|.+.|..+|+|.-+     ..+..|.++|..++-.++. +++.|-     +-++.|||+.+-+|.++-...    
T Consensus        36 s~Vyl~~~~~~~~a~Kvrr~ds~r~~l~kEakiLeil~g~~~~p~vy~yg-----~~~i~me~i~G~~L~~~~~~~----  106 (201)
T COG2112          36 SVVYLGEWRGGEVALKVRRRDSPRRNLEKEAKILEILAGEGVTPEVYFYG-----EDFIRMEYIDGRPLGKLEIGG----  106 (201)
T ss_pred             cEEEEeeccCceEEEEEecCCcchhhHHHHHHHHHHhhhcCCCceEEEec-----hhhhhhhhhcCcchhhhhhcc----
Confidence            3799999999999999876     4578899999999887776 455542     235669999887887765421    


Q ss_pred             CCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCC-C-CceeeCCCCcEEEeecCCCCC
Q 047629          417 SSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIR-T-NNIQLDSRFKAKIANFSLAAP  480 (615)
Q Consensus       417 ~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk-~-~NILld~~~~~kl~DFGla~~  480 (615)
                               +-.++.    .++..---|-..+   |-|..|. | +||++.+ ..+.|.||.-|+.
T Consensus       107 ---------~rk~l~----~vlE~a~~LD~~G---I~H~El~~~~k~vlv~~-~~~~iIDFd~At~  155 (201)
T COG2112         107 ---------DRKHLL----RVLEKAYKLDRLG---IEHGELSRPWKNVLVND-RDVYIIDFDSATF  155 (201)
T ss_pred             ---------cHHHHH----HHHHHHHHHHHhc---cchhhhcCCceeEEecC-CcEEEEEccchhh
Confidence                     112222    3333322233334   7777775 3 4555544 4999999988763

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=95.73  E-value=0.09  Score=54.12  Aligned_cols=137  Identities=18%  Similarity=0.261  Sum_probs=78.6

Q ss_pred             eEEEEEECCeEEEEEEcc----HHHHHHHHHHHhcCCCC--cccEEEE-----EEcCCCcEEEEEeecCCCCHHH-----
Q 047629          344 SVYRATIDGKVLAVKKIK----EDVTEELRILQRINHAN--LVKLMGV-----SSDSQGNRFLVYEYAENGSLDK-----  407 (615)
Q Consensus       344 ~Vy~~~~~g~~vAvK~~~----~~~~~Ei~~l~~l~H~n--iv~l~g~-----~~~~~~~~~lV~E~~~~GsL~~-----  407 (615)
                      .+|+...++..+++|...    .....|++++..+++.+  +.+.+..     ....++..++|++|+++..+..     
T Consensus        29 ~~y~v~~~~~~~vLr~~~~~~~~~~~~e~~~l~~L~~~g~~vp~~i~~~~g~~~~~~~~~~~~l~~~i~G~~~~~~~~~~  108 (296)
T cd05153          29 TNYFVTTDSGRYVLTLFEKVSAEELPFFLALLDHLAERGLPVPRPIADRDGEYLSELAGKPAALVEFLAGEHLTRPTAAH  108 (296)
T ss_pred             ceEEEEeCCCcEEEEEcCCCChHhccHHHHHHHHHHHCCCCCCccccCCCCcEeeeeCCceEEEEEeCCCCCCCCCCHHH
Confidence            688877777778889865    34567899988885443  4444432     1112235689999998866532     


Q ss_pred             ---------hhccCCCC-CCCCCcccccCHHHHHH----------HHHHHHHHHHHHHhC----CCCCeEecCCCCCcee
Q 047629          408 ---------WLHPKSKS-SSSSGSVIFLTWSQRLR----------VALDVANGLQYMHEH----AQPSIVHRDIRTNNIQ  463 (615)
Q Consensus       408 ---------~L~~~~~~-~~~~~~~~~l~~~~~~~----------i~~~ia~gL~yLH~~----~~~~ivHrDlk~~NIL  463 (615)
                               .||..... ...........|.....          ....+...+.++...    ....++|+|+.|.|+|
T Consensus       109 ~~~lg~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil  188 (296)
T cd05153         109 CRQIGEALARLHLAAQSFPGERNNLRGLAWIRELGKDLLPLLSAEDRALLADELARQDAFDPSDLPRGVIHADLFRDNVL  188 (296)
T ss_pred             HHHHHHHHHHHHHHhccCCccCCCcCCcHHHHHHHHHhccccCHHHHHHHHHHHHHHHhhhhhcCCCcCCccCcCcccEE
Confidence                     01111100 00000011133433211          111233445555431    1235999999999999


Q ss_pred             eCCCCcEEEeecCCCCC
Q 047629          464 LDSRFKAKIANFSLAAP  480 (615)
Q Consensus       464 ld~~~~~kl~DFGla~~  480 (615)
                      ++++....|.||+.+..
T Consensus       189 ~~~~~~~~iIDfe~a~~  205 (296)
T cd05153         189 FDGDELSGVIDFYFACT  205 (296)
T ss_pred             EeCCceEEEeehhhhcC
Confidence            99987778999997654

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>PRK14125 cell division suppressor protein YneA; Provisional

Probab=95.72  E-value=0.043  Score=47.10  Aligned_cols=51  Identities=18%  Similarity=0.271  Sum_probs=40.4

Q ss_pred             ccceeeecccCCCCCCHHHHHHhhCCC--------hHHHHhhcCCCCCCCCCCCCccEEeeee
Q 047629           41 CKTYVAYFAQSPEFLDLSNISDLFGVS--------RLSIARASNLVSEDTPLVPKQLLLVPII   95 (615)
Q Consensus        41 C~~~~~y~~~~~~~~~l~~i~~lf~~~--------~~~i~~~n~~~~~~~~~~~~~~~~vP~~   95 (615)
                      +..|..|+.++++  ||.+||..|+.+        ...|...|++.  ++.+.+|+.++||..
T Consensus        33 ~~~~~~~tV~~GD--TLW~IA~~y~~~~~l~~~~~v~~I~~~N~l~--~~~I~~Gq~L~IP~~   91 (103)
T PRK14125         33 KNQYVEITVQEGD--TLWALADQYAGKHHMAKNEFIEWVEDVNNLP--SGHIKAGDKLVIPVL   91 (103)
T ss_pred             CCCcEEEEECCCC--CHHHHHHHhCCCcCCCHHHHHHHHHHhcCCC--CCcCCCCCEEEEecC
Confidence            4577789998665  999999999865        34667788865  346999999999985

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=95.58  E-value=0.21  Score=48.46  Aligned_cols=93  Identities=23%  Similarity=0.356  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHhcC------CCCcccEEEEEEcCCCcEEEEEeecCC--C----CHHHhhccCCCCCCCCCcccccCHHHH
Q 047629          363 DVTEELRILQRIN------HANLVKLMGVSSDSQGNRFLVYEYAEN--G----SLDKWLHPKSKSSSSSGSVIFLTWSQR  430 (615)
Q Consensus       363 ~~~~Ei~~l~~l~------H~niv~l~g~~~~~~~~~~lV~E~~~~--G----sL~~~L~~~~~~~~~~~~~~~l~~~~~  430 (615)
                      +..+|+.-...+.      +.+|.+++|+...+. -.-+|+|.+.+  |    +|.+++....           ++. ..
T Consensus        57 ~~~~E~~~y~~l~~~~~~~~~~i~r~~G~veT~~-G~Glv~e~I~d~dG~~s~TL~~~l~~~~-----------~~~-~~  123 (199)
T PF10707_consen   57 QNRRELRYYKQLSLRRGVDWSHIPRFYGFVETNL-GLGLVVELIRDADGNISPTLEDYLKEGG-----------LTE-EL  123 (199)
T ss_pred             HHHHHHHHHHHHhhccCCcccccccEeEEEecCC-ceEEEEEEEECCCCCcCccHHHHHHcCC-----------ccH-HH
Confidence            3456777666665      889999999976544 47888888643  2    5778875432           444 33


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC---C-cEEEee
Q 047629          431 LRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR---F-KAKIAN  474 (615)
Q Consensus       431 ~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~---~-~~kl~D  474 (615)
                      .+.+.+   =..||-++.   |+.+|++|+||++...   . .+.|.|
T Consensus       124 ~~~L~~---f~~~l~~~~---Iv~~dl~~~NIv~~~~~~~~~~lvlID  165 (199)
T PF10707_consen  124 RQALDE---FKRYLLDHH---IVIRDLNPHNIVVQRRDSGEFRLVLID  165 (199)
T ss_pred             HHHHHH---HHHHHHHcC---CeecCCCcccEEEEecCCCceEEEEEe
Confidence            333333   346666666   9999999999999543   2 577777

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=95.41  E-value=0.27  Score=50.97  Aligned_cols=152  Identities=15%  Similarity=0.277  Sum_probs=82.7

Q ss_pred             ceEEEEEECCeEEEEEEcc-----HHHHHHHHHHHhcCCCC--cccEEEEE-----EcCCCcEEEEEeecCCCCHHH---
Q 047629          343 KSVYRATIDGKVLAVKKIK-----EDVTEELRILQRINHAN--LVKLMGVS-----SDSQGNRFLVYEYAENGSLDK---  407 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~-----~~~~~Ei~~l~~l~H~n--iv~l~g~~-----~~~~~~~~lV~E~~~~GsL~~---  407 (615)
                      ..+|+...++..+.+|..+     .....|.+++..+....  +.+.+...     ...++..++++||+++..+..   
T Consensus        36 n~~y~v~t~~~~~vLK~~~~~~~~~~i~~e~~~l~~L~~~g~pvp~~i~t~~g~~~~~~~g~~~~l~e~i~G~~~~~~~~  115 (307)
T TIGR00938        36 NSNYLLTTDVGRYILTLYEKRVKAEELPFFLALTTHLAARGLPVPKPVKSRDGRQLSTLAGKPACLVEFLQGLSVGRPTA  115 (307)
T ss_pred             cceEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHHHHHHCCCCCCccccCCCCCeehhcCCeEEEEEEeCCCCCCCCCCH
Confidence            3688876655567778653     34567888888874322  34444421     112345789999998754321   


Q ss_pred             -----------hhccCCCCC-CC-CCcccccCHHHHHH------------HHHHHHHHHHHHHh----CCCCCeEecCCC
Q 047629          408 -----------WLHPKSKSS-SS-SGSVIFLTWSQRLR------------VALDVANGLQYMHE----HAQPSIVHRDIR  458 (615)
Q Consensus       408 -----------~L~~~~~~~-~~-~~~~~~l~~~~~~~------------i~~~ia~gL~yLH~----~~~~~ivHrDlk  458 (615)
                                 .+|.....- .. ......-.|.....            ....+...++++..    .....++|+|++
T Consensus       116 ~~~~~~G~~LA~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~HgD~~  195 (307)
T TIGR00938       116 MHCRPVGEVLAWMHLAGAHFPENRKNSLRLEAWHILAEKCFEAAPQLEAHMGAELDKELDYLDKFWPRDLPRGVIHADLF  195 (307)
T ss_pred             HHHHHHHHHHHHHHhhhccCCCCCCCCCChHHHHHHHHhhhhcccccCHHHHHHHHHHHHHHHhhhhhcCCCccCCCCCC
Confidence                       122211100 00 00000112322111            11223345555543    223469999999


Q ss_pred             CCceeeCCCCcEEEeecCCCCCCCCCCCCcccchhHHHHHHHH
Q 047629          459 TNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLEL  501 (615)
Q Consensus       459 ~~NILld~~~~~kl~DFGla~~~~~~~~~k~DV~SfGvvl~El  501 (615)
                      +.|++++.+....|.||+.+....       -+|-++.++...
T Consensus       196 ~~Nvl~~~~~~~~vIDfd~~~~~~-------~~~DLA~~~~~~  231 (307)
T TIGR00938       196 PDNVLFDGDSVKGVIDFYFACTDA-------RAYDLAITVNAW  231 (307)
T ss_pred             cCcEEEECCceEEEeecccccCcc-------hHHHHHHHHHHH
Confidence            999999988777899999765432       255566655433

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=95.39  E-value=0.18  Score=52.36  Aligned_cols=131  Identities=20%  Similarity=0.374  Sum_probs=73.3

Q ss_pred             CCeEEEEEEc--------cHHHHHHHHHHHhcCC--CCcccEEEEEEcCC-CcEEEEEeecCCCCHHHhhccC-------
Q 047629          351 DGKVLAVKKI--------KEDVTEELRILQRINH--ANLVKLMGVSSDSQ-GNRFLVYEYAENGSLDKWLHPK-------  412 (615)
Q Consensus       351 ~g~~vAvK~~--------~~~~~~Ei~~l~~l~H--~niv~l~g~~~~~~-~~~~lV~E~~~~GsL~~~L~~~-------  412 (615)
                      +++.+.+.+-        -.+..+|..+|+.+.-  --.-+.+++|.+.. +..|.||+|.++..+...+...       
T Consensus        47 ~~~~~vlR~P~~~~~~~~~~~~~re~~~i~~l~~~~vP~p~~~~~~~~~~~g~pf~v~~~veGe~~~~~~~~~~~~~~~~  126 (321)
T COG3173          47 TGQKYVLRKPPRGDPVESAHDEKREYRVIAALLDVDVPVPRAFGLCGEGYLGTPFYVMEWVEGEVVWSALPPESLGRQFA  126 (321)
T ss_pred             CCceEEEecCCccccchhhhHHHhHHHHHHHhcCCCCCCcccccccccCCCCCceEEEEEecceeccCcCCcccchHHHH
Confidence            4666666611        1345678888887743  22345677776554 5679999999873222221110       


Q ss_pred             --------------CCCCC-CCC------cccccCHHHHHHHHH--------HHHHHHHHHHhCC-----CCCeEecCCC
Q 047629          413 --------------SKSSS-SSG------SVIFLTWSQRLRVAL--------DVANGLQYMHEHA-----QPSIVHRDIR  458 (615)
Q Consensus       413 --------------~~~~~-~~~------~~~~l~~~~~~~i~~--------~ia~gL~yLH~~~-----~~~ivHrDlk  458 (615)
                                    ..... ..+      ....-.|...++.+.        ....-..||+++.     .+.++|+|+.
T Consensus       127 ~~~l~~~La~LH~ida~~~~~~g~~~~~~~rql~~~~~~~~~~~~~~~~~~p~~~~~~~Wl~~~~p~~~~~~~lvHGD~~  206 (321)
T COG3173         127 LDALADFLAELHSIDAAGLPDPGKPNAYRGRQLARWDDEYRRAKKELGGRIPLADRLIKWLEANRPPWAGPPVLVHGDYR  206 (321)
T ss_pred             HHHHHHHHHHHhCCCCcCCCCCCccCccccchhhHHHHHHHHHHHhccCCCchHHHHHHHHHhcCCCcCCCceeeeCCcc
Confidence                          00000 000      000112222221111        1122345555543     4579999999


Q ss_pred             CCceeeCCCCcEEEeecCCCCCC
Q 047629          459 TNNIQLDSRFKAKIANFSLAAPA  481 (615)
Q Consensus       459 ~~NILld~~~~~kl~DFGla~~~  481 (615)
                      +.|++++...-.-|.||+++...
T Consensus       207 ~gNlii~~~~~~gVlDwe~~~lG  229 (321)
T COG3173         207 PGNLIIDPGRPTGVLDWELATLG  229 (321)
T ss_pred             cCCEEEeCCCeeEEEeccccccC
Confidence            99999999888999999987664

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=95.35  E-value=0.22  Score=51.38  Aligned_cols=47  Identities=21%  Similarity=0.240  Sum_probs=36.8

Q ss_pred             CCCeEecCCCCCceeeCCC----CcEEEeecCCCCCCCCCCCCcccchhHHHHHHHHH
Q 047629          449 QPSIVHRDIRTNNIQLDSR----FKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELL  502 (615)
Q Consensus       449 ~~~ivHrDlk~~NILld~~----~~~kl~DFGla~~~~~~~~~k~DV~SfGvvl~Ell  502 (615)
                      ...++|+|+.+.|||++++    ..+++.||..+.....       .|-+|..+-|+.
T Consensus       178 ~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~~~p-------~~DlA~~~~e~~  228 (302)
T cd05156         178 PVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASYNYR-------GFDIANHFCEWM  228 (302)
T ss_pred             CceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCCCCc-------HHHHHHHHHHHH
Confidence            4568999999999999985    7899999998765433       355677777765

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation

Probab=95.28  E-value=0.036  Score=38.65  Aligned_cols=44  Identities=25%  Similarity=0.352  Sum_probs=36.6

Q ss_pred             ecccCCCCCCHHHHHHhhCCChHHHHhhcCCCCCCCCCCCCccEEee
Q 047629           47 YFAQSPEFLDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVP   93 (615)
Q Consensus        47 y~~~~~~~~~l~~i~~lf~~~~~~i~~~n~~~~~~~~~~~~~~~~vP   93 (615)
                      |+.+..  .|+..|+..|+++..+|...|+.. ....+.+|+.+.||
T Consensus         3 ~~v~~g--dt~~~ia~~~~~~~~~~~~~N~~~-~~~~~~~g~~l~ip   46 (46)
T cd00118           3 YTVKKG--DTLSSIAQRYGISVEELLKLNGLS-DPDNLQVGQKLKIP   46 (46)
T ss_pred             EEECCC--CCHHHHHHHHCcCHHHHHHHcCCC-CccccCCCCEEecC
Confidence            555544  599999999999999999999973 45678899999887

This domain may have a general peptidoglycan binding function.

>COG1388 LytE FOG: LysM repeat [Cell envelope biogenesis, outer membrane]

Probab=95.17  E-value=0.034  Score=49.49  Aligned_cols=111  Identities=21%  Similarity=0.329  Sum_probs=73.1

Q ss_pred             HHHhhCCChHHHHhhcCCCCCCCCCCCCccEEeeeeeccCCCceeeeeeEEeecCCchhhhhhhhcCCcchHHHHHHhCC
Q 047629           60 ISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPIICGCTGNQYFANITYQIKKGDSYYLVSITSFENLTNWHAVLEMNP  139 (615)
Q Consensus        60 i~~lf~~~~~~i~~~n~~~~~~~~~~~~~~~~vP~~C~C~~~~~~~~~~y~v~~gdt~~~ia~~~~~~L~t~~~~~~~n~  139 (615)
                      |+.-|+++..++..+|+.....+.+.+||.+.+|-.           ..+....+++....+......-.          
T Consensus         1 ia~~~~~~v~~l~~~n~~~~~s~~i~~gq~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~----------   59 (124)
T COG1388           1 IASKYGVSVKALKKANALTGKSDAIKPGQVLKIPGD-----------ISSTVNAGQTLSSLSNKVSDSSS----------   59 (124)
T ss_pred             CcccccccHHHHHHHhcccCCCCccccCceEEccCC-----------cccccccccccccccceeecccc----------
Confidence            456688888999999986534677889999988764           22333344444443332221111          


Q ss_pred             CCCCCCcCCCcEEEEEeeccCCCCCCCCCCeeEEEEEecCCCCchhHHHHHhcCChhhHhhhccccCccccCccceecc
Q 047629          140 GINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLITYVWQPGDDVSQVGAKLNASSAAIETENEYRNFSEAVSLPVLIP  218 (615)
Q Consensus       140 ~~~~~~l~~G~~~~vpl~c~C~~~~~~s~~~~~l~ty~~~~gd~~~~ia~~F~~s~~~i~~~n~~~~~~~~~~~~~l~p  218 (615)
                                                 .....+..+|.+..||++..||.+|+.+...+...|++.++....+..+-++
T Consensus        60 ---------------------------~~~~~~~~~~~V~~gdtL~~Ia~~~~~tv~~l~~~n~l~~~~i~~gq~l~~~  111 (124)
T COG1388          60 ---------------------------ASKAPPVVTYTVKKGDTLSKIARKYGVTVAELKQLNNLSSDKIKVGQKLKLP  111 (124)
T ss_pred             ---------------------------ccccCCCceEEEecCCCHHHHHHHhCCCHHHHHHHhccCCCceecCcEEEEe
Confidence                                       0111223579999999999999999999999999998855555555544443

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=94.98  E-value=0.76  Score=49.47  Aligned_cols=58  Identities=21%  Similarity=0.176  Sum_probs=39.8

Q ss_pred             eEEEEEE-CC-eEEEEEEcc--------------HHHHHHHHHHHhcC---CCCcccEEEEEEcCCCcEEEEEeecCCCC
Q 047629          344 SVYRATI-DG-KVLAVKKIK--------------EDVTEELRILQRIN---HANLVKLMGVSSDSQGNRFLVYEYAENGS  404 (615)
Q Consensus       344 ~Vy~~~~-~g-~~vAvK~~~--------------~~~~~Ei~~l~~l~---H~niv~l~g~~~~~~~~~~lV~E~~~~Gs  404 (615)
                      .||+... +| +.+.||.-.              .....|.+.|..+.   -.++.+++.+  +. ...++||||+++..
T Consensus        41 ~VyrV~~~~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~--D~-~~~~lVME~L~~~~  117 (401)
T PRK09550         41 LVFRVSDTEGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHY--DE-ELAVTVMEDLSDHK  117 (401)
T ss_pred             EEEEEEeCCCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEE--CC-CCCEEEEecCCCcc
Confidence            6899888 44 489999732              22466888888762   2456677776  22 35789999998744

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=94.93  E-value=0.39  Score=49.71  Aligned_cols=63  Identities=21%  Similarity=0.343  Sum_probs=39.0

Q ss_pred             ceEEEEEECCeEEEEEEcc---HHHHHHHHHHHhcCCC--CcccEEEE-----EEcCCCcEEEEEeecCCCCH
Q 047629          343 KSVYRATIDGKVLAVKKIK---EDVTEELRILQRINHA--NLVKLMGV-----SSDSQGNRFLVYEYAENGSL  405 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~---~~~~~Ei~~l~~l~H~--niv~l~g~-----~~~~~~~~~lV~E~~~~GsL  405 (615)
                      ..||+...++..+++|+..   .....|+..+..+...  .+.+++..     +...++..++++||+++.++
T Consensus        10 ~~v~~v~t~~g~~~LK~~~~~~~~~~~~~~~~~~L~~~g~~vp~~i~t~~g~~~~~~~~~~~~l~~~i~G~~~   82 (313)
T TIGR02906        10 RNVYKVETDSGNKCLKKINYPPERLLFILGAQEHLRKNGFNIPKILKTKDGELYVKYNGDLYVLTEWIEGREC   82 (313)
T ss_pred             ccEEEEEeCCCCeEEEEcCCCHHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEehhccCcCC
Confidence            3688877755578899875   2355677777777433  33444432     11113457899999987544

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>PRK14125 cell division suppressor protein YneA; Provisional

Probab=94.58  E-value=0.078  Score=45.51  Aligned_cols=50  Identities=14%  Similarity=0.345  Sum_probs=38.4

Q ss_pred             eeEEeecCCchhhhhhhhcC--Ccch---HHHHHHhCCCCCCCCcCCCcEEEEEee
Q 047629          107 ITYQIKKGDSYYLVSITSFE--NLTN---WHAVLEMNPGINPNLLQIGVKVTFPLF  157 (615)
Q Consensus       107 ~~y~v~~gdt~~~ia~~~~~--~L~t---~~~~~~~n~~~~~~~l~~G~~~~vpl~  157 (615)
                      ..|+|++|||+..||....-  +++.   +.+++..|. ++.+.+.+|+.+.+|..
T Consensus        37 ~~~tV~~GDTLW~IA~~y~~~~~l~~~~~v~~I~~~N~-l~~~~I~~Gq~L~IP~~   91 (103)
T PRK14125         37 VEITVQEGDTLWALADQYAGKHHMAKNEFIEWVEDVNN-LPSGHIKAGDKLVIPVL   91 (103)
T ss_pred             EEEEECCCCCHHHHHHHhCCCcCCCHHHHHHHHHHhcC-CCCCcCCCCCEEEEecC
Confidence            56899999999999986543  3444   566777776 55567999999999964

>PRK11198 LysM domain/BON superfamily protein; Provisional

Probab=94.37  E-value=0.053  Score=49.88  Aligned_cols=50  Identities=20%  Similarity=0.404  Sum_probs=43.0

Q ss_pred             eeeEEeecCCchhhhhhhhcCCcchHHHHHHhCC--CCCCCCcCCCcEEEEE
Q 047629          106 NITYQIKKGDSYYLVSITSFENLTNWHAVLEMNP--GINPNLLQIGVKVTFP  155 (615)
Q Consensus       106 ~~~y~v~~gdt~~~ia~~~~~~L~t~~~~~~~n~--~~~~~~l~~G~~~~vp  155 (615)
                      ..+|++++|||...||...|..-..|..+...|+  ..++..+++|+.+.+|
T Consensus        95 ~~~y~Vk~GDTL~~IA~~~~g~~~~~~~I~~~N~~~l~~~~~I~pGq~L~IP  146 (147)
T PRK11198         95 SQFYTVKSGDTLSAIAKKVYGNANKYNKIFEANKPMLKSPDKIYPGQVLRIP  146 (147)
T ss_pred             CeEEEECCCCCHHHHHHHHcCChhhHHHHHHhhhhcCCCcCCcCcCCEEecC
Confidence            3569999999999999988777677999999997  4577889999999887

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=94.30  E-value=0.31  Score=50.12  Aligned_cols=59  Identities=25%  Similarity=0.327  Sum_probs=37.8

Q ss_pred             eEEEEEECCeEEEEEEccH----HHHHHHHHHHhcC---CCCcccEEEEEEcCCCcEEEEEeecCCC
Q 047629          344 SVYRATIDGKVLAVKKIKE----DVTEELRILQRIN---HANLVKLMGVSSDSQGNRFLVYEYAENG  403 (615)
Q Consensus       344 ~Vy~~~~~g~~vAvK~~~~----~~~~Ei~~l~~l~---H~niv~l~g~~~~~~~~~~lV~E~~~~G  403 (615)
                      .+|+...+++.+.||.-..    .|..|.+-|+.|.   --.+.+.+++-... +..+||+||++.+
T Consensus        32 ~a~~~~~~~~~~FvK~~~~~~~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G~~~-~~~fLlle~l~~~   97 (288)
T PF03881_consen   32 EAYRLDTDGGSYFVKVNSESGRDMFEGEAEGLKALAEANPIRVPKVIAWGEYD-DDAFLLLEFLEMG   97 (288)
T ss_dssp             EEEEEETTS-EEEEEEEEGGGCCHHHHHHHHHHHHCHTTTSBS--EEEEEE-S-SCCEEEEE-----
T ss_pred             heEEEECCCccEEEEecChhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeec-CCceEEEEeecCC
Confidence            6777766889999998764    3888999999884   33466888876543 3569999999876

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>PRK05231 homoserine kinase; Provisional

Probab=94.09  E-value=1.1  Score=46.65  Aligned_cols=46  Identities=13%  Similarity=0.301  Sum_probs=33.0

Q ss_pred             CCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCCCCCcccchhHHHHHHHHH
Q 047629          450 PSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELL  502 (615)
Q Consensus       450 ~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~k~DV~SfGvvl~Ell  502 (615)
                      ..++|+|+++.|||++.+...-|.||+.+....       =+|-+++.+....
T Consensus       187 ~~liHgD~~~~Nil~~~~~~~~iIDf~~~~~~~-------~~~DlA~~~~~~~  232 (319)
T PRK05231        187 RGVIHADLFRDNVLFEGDRLSGFIDFYFACNDK-------LLYDVAITLNDWC  232 (319)
T ss_pred             cccCCCCCCCCcEEEECCceEEEEecccccCCc-------hHHHHHHHHHHHH
Confidence            359999999999999977656899999875432       2455555554333

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=93.87  E-value=0.53  Score=48.15  Aligned_cols=33  Identities=18%  Similarity=0.387  Sum_probs=27.0

Q ss_pred             CCCeEecCCCCCceeeCCCCc-EEEeecCCCCCC
Q 047629          449 QPSIVHRDIRTNNIQLDSRFK-AKIANFSLAAPA  481 (615)
Q Consensus       449 ~~~ivHrDlk~~NILld~~~~-~kl~DFGla~~~  481 (615)
                      .+.++|+|+++.|||++++++ .-|.||+.+...
T Consensus       184 ~~~lvHGD~~~~Nilv~~~~~~~gviDWe~a~iG  217 (276)
T cd05152         184 HTVLVHGDLHPGHILIDEDARVTGLIDWTEAKVG  217 (276)
T ss_pred             CCeeEeCCCCCCcEEEeCCCCEEEEECcHhcccC
Confidence            346999999999999997555 569999987664

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation

Probab=93.79  E-value=0.11  Score=36.02  Aligned_cols=45  Identities=31%  Similarity=0.550  Sum_probs=35.4

Q ss_pred             eEEeecCCchhhhhhhhcCCcchHHHHHHhCCCCCCCCcCCCcEEEEE
Q 047629          108 TYQIKKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFP  155 (615)
Q Consensus       108 ~y~v~~gdt~~~ia~~~~~~L~t~~~~~~~n~~~~~~~l~~G~~~~vp  155 (615)
                      .|++++|||+..|+...  +. ++.++...|+..+...+.+|+.+.+|
T Consensus         2 ~~~v~~gdt~~~ia~~~--~~-~~~~~~~~N~~~~~~~~~~g~~l~ip   46 (46)
T cd00118           2 TYTVKKGDTLSSIAQRY--GI-SVEELLKLNGLSDPDNLQVGQKLKIP   46 (46)
T ss_pred             EEEECCCCCHHHHHHHH--Cc-CHHHHHHHcCCCCccccCCCCEEecC
Confidence            58999999999999655  33 35678888887666788899987765

This domain may have a general peptidoglycan binding function.

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=93.39  E-value=0.58  Score=49.19  Aligned_cols=122  Identities=27%  Similarity=0.333  Sum_probs=82.2

Q ss_pred             eEEEEEE-CCeEEEEEEccHH---------------------------------HHHHHHHHHhcCCCCcccEEEEEEcC
Q 047629          344 SVYRATI-DGKVLAVKKIKED---------------------------------VTEELRILQRINHANLVKLMGVSSDS  389 (615)
Q Consensus       344 ~Vy~~~~-~g~~vAvK~~~~~---------------------------------~~~Ei~~l~~l~H~niv~l~g~~~~~  389 (615)
                      .||.++- +|..+|||+.+..                                 ...|+.-|.+++...|---.-...  
T Consensus       159 NVYHat~~dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RNLkRl~~aGIP~PePIlL--  236 (520)
T KOG2270|consen  159 NVYHATEEDGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRNLKRLNNAGIPCPEPILL--  236 (520)
T ss_pred             eeEeeecCCCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHHHHHHHhcCCCCCCceee--
Confidence            7999987 8999999987511                                 235777888887665432111111  


Q ss_pred             CCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCc
Q 047629          390 QGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK  469 (615)
Q Consensus       390 ~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~  469 (615)
                       ....|||+|+..   ..|-....+       ...|+......+-.+++.-+.-|-..+  .+||.||.==|+|+. +|.
T Consensus       237 -k~hVLVM~FlGr---dgw~aPkLK-------d~~ls~~ka~~~Y~~~v~~MR~lY~~c--~LVHADLSEfN~Lyh-dG~  302 (520)
T KOG2270|consen  237 -KNHVLVMEFLGR---DGWAAPKLK-------DASLSTSKARELYQQCVRIMRRLYQKC--RLVHADLSEFNLLYH-DGK  302 (520)
T ss_pred             -ecceEeeeeccC---CCCcCcccc-------cccCChHHHHHHHHHHHHHHHHHHHHh--ceeccchhhhhheEE-CCE
Confidence             135799999853   122221111       123676677777788888888887666  599999999999885 468


Q ss_pred             EEEeecCCCCCC
Q 047629          470 AKIANFSLAAPA  481 (615)
Q Consensus       470 ~kl~DFGla~~~  481 (615)
                      +.+.|-+-+.-.
T Consensus       303 lyiIDVSQSVE~  314 (520)
T KOG2270|consen  303 LYIIDVSQSVEH  314 (520)
T ss_pred             EEEEEccccccC
Confidence            899998876543

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=93.12  E-value=0.037  Score=61.32  Aligned_cols=147  Identities=18%  Similarity=0.162  Sum_probs=95.0

Q ss_pred             eEEEEEE-CCeEEEEEEccH--HHHHHHHHHHhcCCCC-cccEEEEEEcCCCcEEEEEeecCCC-CHHHhhccCCCCCCC
Q 047629          344 SVYRATI-DGKVLAVKKIKE--DVTEELRILQRINHAN-LVKLMGVSSDSQGNRFLVYEYAENG-SLDKWLHPKSKSSSS  418 (615)
Q Consensus       344 ~Vy~~~~-~g~~vAvK~~~~--~~~~Ei~~l~~l~H~n-iv~l~g~~~~~~~~~~lV~E~~~~G-sL~~~L~~~~~~~~~  418 (615)
                      .+||.+- ..+...+|.+..  ...-++++|.+++||| .++.++-+. .+...+++++++..| +-..-..        
T Consensus       257 knpKkRptaeklL~h~fvs~~l~~rl~~eLLdK~n~P~~~v~~~~d~~-~E~~~~i~~~i~s~~rs~~~~~~--------  327 (829)
T KOG0576|consen  257 KNPKKRPTAEKLLQHPFVSQTLSRRLAIELLDKVNNPNPVVRYLEDYD-GEDYLWIPMRICSTGRSSALEMT--------  327 (829)
T ss_pred             CCCccCCChhhheeceeeccchhhHHHHHHHHHccCCCCcccccccCC-cccccchhhhhhcCCccccccCC--------
Confidence            4565543 122233444433  3456899999999999 566555443 344578999999876 2111110        


Q ss_pred             CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC--------------
Q 047629          419 SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND--------------  484 (615)
Q Consensus       419 ~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~--------------  484 (615)
                       ...+.+...+...+.+.-.++|+|+|+..   =+|||    ||+..+ ...|.+||+.+..++..              
T Consensus       328 -~se~~~~~~~~~~~~r~et~~l~~l~~~~---~~~~d----~~l~s~-~~~~~~~~~v~~~L~~~~~~~t~~~~~~~~~  398 (829)
T KOG0576|consen  328 -VSEIALEQYQFAYPLRKETRPLAELHSSY---KVHRD----NILGSE-EEVKLLDFAVPPQLTRTMKPRTAIGTPEPLA  398 (829)
T ss_pred             -hhhHhhhhhhhhhhhhhhccccccccccc---ccCcc----cccccc-cccccccccCCcccCcccccccCCCCCCCCC
Confidence             11123555566667777789999999874   48998    777765 57899999987655332              


Q ss_pred             --------CCCcccchhHHHHHHHHHcCCCCC
Q 047629          485 --------VMPKFDVFAFGVVLLELLSGKKAT  508 (615)
Q Consensus       485 --------~~~k~DV~SfGvvl~ElltG~~p~  508 (615)
                              +..+.|+|+.|+--.++--|-.|-
T Consensus       399 pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr  430 (829)
T KOG0576|consen  399 PEVIQENTIDGCPDSGSLAVSAIQMAPGLPPR  430 (829)
T ss_pred             chhhcccccccCCCccCCCcchhhcCCCCCCC
Confidence                    234679999998766776676654

>PRK10871 nlpD lipoprotein NlpD; Provisional

Probab=93.03  E-value=0.1  Score=53.80  Aligned_cols=48  Identities=21%  Similarity=0.364  Sum_probs=40.9

Q ss_pred             eeeEEeecCCchhhhhhhhcCCcchHHHHHHhCCCCCCCCcCCCcEEEEEe
Q 047629          106 NITYQIKKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFPL  156 (615)
Q Consensus       106 ~~~y~v~~gdt~~~ia~~~~~~L~t~~~~~~~n~~~~~~~l~~G~~~~vpl  156 (615)
                      ..+|+|++|||++.||..+.   +.|.+|...|..-+|+.|.+||.|.+|.
T Consensus        60 ~~~y~Vk~GDTL~~IA~~~g---~~~~~La~~N~l~~p~~I~~GQ~L~i~~  107 (319)
T PRK10871         60 GSTYTVKKGDTLFYIAWITG---NDFRDLAQRNNIQAPYSLNVGQTLQVGN  107 (319)
T ss_pred             CCceEECCCCHHHHHHHHHC---cCHHHHHHhcCCCCCccccCCCEEEeCC
Confidence            45799999999999996443   3489999999888899999999999884

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=92.92  E-value=0.35  Score=50.63  Aligned_cols=55  Identities=16%  Similarity=0.227  Sum_probs=46.7

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC
Q 047629          425 LTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT  482 (615)
Q Consensus       425 l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~  482 (615)
                      -.|.+.+.+..+.+.-+.-+..+-  ++-|||+.-.||||| +|++.|.||-++|+..
T Consensus       318 ~~~~e~lsff~s~~sil~~lekkf--~fehrnlt~~niLId-~GnvtLIDfklsRl~~  372 (488)
T COG5072         318 DRSEEELSFFWSCISILDILEKKF--PFEHRNLTLDNILID-EGNVTLIDFKLSRLSY  372 (488)
T ss_pred             ccHHHHHHHHHHHHHHHhhhhhcC--Ccccccccccceeee-cCceEEEEeeeeeccc
Confidence            568999999999877666666543  589999999999999 9999999999998653

>PLN02236 choline kinase

Probab=92.85  E-value=1.8  Score=45.85  Aligned_cols=142  Identities=18%  Similarity=0.318  Sum_probs=81.5

Q ss_pred             eEEEEEEC------CeEEEEEEccH------HHHHHHHHHHhcCCCCcc-cEEEEEEcCCCcEEEEEeecCCCCHHHh--
Q 047629          344 SVYRATID------GKVLAVKKIKE------DVTEELRILQRINHANLV-KLMGVSSDSQGNRFLVYEYAENGSLDKW--  408 (615)
Q Consensus       344 ~Vy~~~~~------g~~vAvK~~~~------~~~~Ei~~l~~l~H~niv-~l~g~~~~~~~~~~lV~E~~~~GsL~~~--  408 (615)
                      .+|+..+.      ++.+.+|....      +-.+|..++..+...++. ++++.+  ..+   .|+||+++.+|...  
T Consensus        51 ~~y~v~~~~~~~~~~~~~v~Ri~g~~t~~~idR~~E~~~~~~l~~~gl~P~~~~~~--~~g---~v~efi~g~~l~~~~l  125 (344)
T PLN02236         51 EVFQIKWPTKEGNLGRKVLVRIYGEGVELFFDRDDEIRTFECMSRHGQGPRLLGRF--PNG---RVEEFIHARTLSAADL  125 (344)
T ss_pred             eeEEEEeCCCCCCCCCeEEEEEccCCCCeeechHHHHHHHHHHHHcCCCCceEEEE--CCc---eEEEeeCCCCCCHHHc
Confidence            57776542      25677776643      236799999998666655 566654  233   58999977666422  


Q ss_pred             ---------------hccCCCCCCCCCcccccCHHHHHHHHHH-----------------HHHHHHHHH----h-CCCCC
Q 047629          409 ---------------LHPKSKSSSSSGSVIFLTWSQRLRVALD-----------------VANGLQYMH----E-HAQPS  451 (615)
Q Consensus       409 ---------------L~~~~~~~~~~~~~~~l~~~~~~~i~~~-----------------ia~gL~yLH----~-~~~~~  451 (615)
                                     +|.....    ....+..|.++.++..+                 +..-+..|.    . .....
T Consensus       126 ~~~~~~~~ia~~L~~lH~~~~~----~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~  201 (344)
T PLN02236        126 RDPEISALIAAKLREFHSLDMP----GPKNVLLWDRLRNWLKEAKNLCSPEEAKEFRLDSLEDEINLLEKELSGDDQEIG  201 (344)
T ss_pred             CChHHHHHHHHHHHHHhCCCCC----CCCCchHHHHHHHHHHHHHhhcCcchhhhcCHHHHHHHHHHHHHHhcccCCCce
Confidence                           2222111    00111223333333211                 111222222    1 22335


Q ss_pred             eEecCCCCCceeeCC-CCcEEEeecCCCCCCCCCCCCcccchhHHHHHHHH
Q 047629          452 IVHRDIRTNNIQLDS-RFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLEL  501 (615)
Q Consensus       452 ivHrDlk~~NILld~-~~~~kl~DFGla~~~~~~~~~k~DV~SfGvvl~El  501 (615)
                      ++|+|+++.|||+++ +..+.+.||..+.....       .|-+|..+.|.
T Consensus       202 ~cH~Dl~~~Nil~~~~~~~~~lID~Eya~~~~~-------~~Dia~~~~e~  245 (344)
T PLN02236        202 FCHNDLQYGNIMIDEETRAITIIDYEYASYNPV-------AYDIANHFCEM  245 (344)
T ss_pred             EEeCCCCcCcEEEeCCCCcEEEEeehhccccch-------HHHHHHHHHHH
Confidence            899999999999986 46899999988765432       35677777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	615
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		5e-24
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		9e-24
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		1e-20
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		1e-20
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		2e-20
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		4e-20
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		2e-16
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		3e-16
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		1e-14
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		4e-14
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		2e-11
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		3e-11
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		4e-11
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		5e-11
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		1e-10
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		1e-10
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		2e-10
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		2e-10
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		2e-10
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		2e-10
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		6e-10
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		6e-10
1fvr_A	327	Tie2 Kinase Domain Length = 327		1e-09
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		1e-09
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		1e-09
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		1e-09
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		1e-09
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		2e-09
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		2e-09
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		2e-09
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		2e-09
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		2e-09
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		2e-09
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		2e-09
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		2e-09
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		2e-09
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		2e-09
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		2e-09
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		2e-09
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		3e-09
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		4e-09
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		4e-09
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		5e-09
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		5e-09
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		6e-09
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		6e-09
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		6e-09
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		6e-09
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		6e-09
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		6e-09
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		6e-09
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		6e-09
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		7e-09
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		7e-09
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		7e-09
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		8e-09
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		8e-09
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		8e-09
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		1e-08
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-08
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		1e-08
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		1e-08
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		1e-08
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		1e-08
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		1e-08
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		1e-08
4h58_A	275	Braf In Complex With Compound 3 Length = 275		2e-08
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		2e-08
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		2e-08
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		2e-08
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		2e-08
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		2e-08
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		2e-08
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		2e-08
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		2e-08
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		2e-08
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		3e-08
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		3e-08
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		3e-08
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		3e-08
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		4e-08
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		4e-08
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		6e-08
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		6e-08
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		6e-08
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		6e-08
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		6e-08
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		6e-08
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		6e-08
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		6e-08
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		6e-08
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		7e-08
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		7e-08
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		7e-08
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		7e-08
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		7e-08
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		7e-08
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		7e-08
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		7e-08
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		7e-08
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		8e-08
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		8e-08
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		9e-08
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		9e-08
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-07
2pl0_A	289	Lck Bound To Imatinib Length = 289		1e-07
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		1e-07
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		1e-07
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		1e-07
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		1e-07
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		1e-07
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		1e-07
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		1e-07
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		1e-07
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		1e-07
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		1e-07
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		1e-07
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		1e-07
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		1e-07
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		1e-07
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		1e-07
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		2e-07
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		2e-07
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		2e-07
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		2e-07
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		2e-07
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		2e-07
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		2e-07
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		2e-07
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		2e-07
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		2e-07
3cjg_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		2e-07
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		2e-07
3cjf_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		2e-07
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		2e-07
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		3e-07
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		3e-07
2qlu_A	314	Crystal Structure Of Activin Receptor Type Ii Kinas		3e-07
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		3e-07
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		3e-07
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		3e-07
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		3e-07
3g2f_A	336	Crystal Structure Of The Kinase Domain Of Bone Morp		3e-07
2yjr_A	342	Structure Of F1174l Mutant Anaplastic Lymphoma Kina		4e-07
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		4e-07
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		4e-07
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		4e-07
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		4e-07
4fnw_A	327	Crystal Structure Of The Apo F1174l Anaplastic Lymp		4e-07
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		4e-07
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		4e-07
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		4e-07
3l9p_A	367	Crystal Structure Of The Anaplastic Lymphoma Kinase		5e-07
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		5e-07
2yhv_A	342	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		5e-07
3lct_A	344	Crystal Structure Of The Anaplastic Lymphoma Kinase		5e-07
2yfx_A	327	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		5e-07
2xb7_A	315	Structure Of Human Anaplastic Lymphoma Kinase In Co		5e-07
2xp2_A	327	Structure Of The Human Anaplastic Lymphoma Kinase I		5e-07
3aox_A	344	X-Ray Crystal Structure Of Human Anaplastic Lymphom		6e-07
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		6e-07
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		6e-07
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		6e-07
4fnx_A	327	Crystal Structure Of The Apo R1275q Anaplastic Lymp		6e-07
3q4t_A	322	Crystal Structure Of Activin Receptor Type-Iia (Acv		6e-07
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		6e-07
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		7e-07
4fnz_A	327	Crystal Structure Of Human Anaplastic Lymphoma Kina		7e-07
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		7e-07
1ywn_A	316	Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]p		7e-07
4dce_A	333	Crystal Structure Of Human Anaplastic Lymphoma Kina		7e-07
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		7e-07
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		7e-07
2p2i_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		7e-07
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		8e-07
2xir_A	316	Crystal Structure Of The Vegfr2 Kinase Domain In Co		8e-07
3c7q_A	316	Structure Of Vegfr2 Kinase Domain In Complex With B		8e-07
3u6j_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		8e-07
3vnt_A	318	Crystal Structure Of The Kinase Domain Of Human Veg		8e-07
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		8e-07
4fob_A	353	Crystal Structure Of Human Anaplastic Lymphoma Kina		8e-07
4agc_A	353	Crystal Structure Of Vegfr2 (Juxtamembrane And Kina		8e-07
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		8e-07
2oh4_A	316	Crystal Structure Of Vegfr2 With A Benzimidazole-Ur		8e-07
2p2h_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		8e-07
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		9e-07
2yjs_A	342	Structure Of C1156y Mutant Anaplastic Lymphoma Kina		9e-07
1vr2_A	316	Human Vascular Endothelial Growth Factor Receptor 2		9e-07
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		9e-07
3ewh_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		9e-07
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		9e-07
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		1e-06
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		1e-06
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		1e-06
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		1e-06
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		1e-06
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		1e-06
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		1e-06
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		1e-06
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		1e-06
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		1e-06
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		1e-06
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		1e-06
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		1e-06
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		1e-06
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		1e-06
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		1e-06
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		1e-06
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		1e-06
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		1e-06
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		1e-06
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		1e-06
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		1e-06
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		1e-06
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		1e-06
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		1e-06
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		1e-06
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		1e-06
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		1e-06
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-06
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		1e-06
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		1e-06
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		2e-06
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		2e-06
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		2e-06
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		2e-06
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		2e-06
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		2e-06
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		2e-06
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		2e-06
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		2e-06
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		2e-06
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		2e-06
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		2e-06
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		2e-06
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		2e-06
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		2e-06
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		2e-06
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		2e-06
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		2e-06
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		2e-06
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		2e-06
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		2e-06
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		2e-06
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		2e-06
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		2e-06
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		2e-06
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		3e-06
1gjo_A	316	The Fgfr2 Tyrosine Kinase Domain Length = 316		3e-06
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		3e-06
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		3e-06
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		3e-06
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		3e-06
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		3e-06
3ri1_A	313	Crystal Structure Of The Catalytic Domain Of Fgfr2		3e-06
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		3e-06
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		3e-06
3b2t_A	311	Structure Of Phosphotransferase Length = 311		3e-06
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		3e-06
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		3e-06
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		3e-06
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		3e-06
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		3e-06
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		3e-06
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		3e-06
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		3e-06
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		3e-06
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		3e-06
2psq_A	370	Crystal Structure Of Unphosphorylated Unactivated W		3e-06
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		3e-06
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		3e-06
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		3e-06
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		3e-06
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		3e-06
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		3e-06
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		3e-06
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		3e-06
2pzp_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-06
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		3e-06
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		3e-06
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-06
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		3e-06
2pwl_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-06
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		3e-06
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		3e-06
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		3e-06
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		3e-06
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		3e-06
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		4e-06
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		4e-06
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		4e-06
2pvy_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		4e-06
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		4e-06
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		4e-06
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		4e-06
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		4e-06
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		4e-06
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		4e-06
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		4e-06
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		4e-06
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		4e-06
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		4e-06
2a19_B	284	Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Leng		4e-06
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		4e-06
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		4e-06
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		4e-06
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		4e-06
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		4e-06
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		5e-06
2pzr_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		6e-06
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		6e-06
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		6e-06
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		7e-06
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		7e-06
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		7e-06
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		7e-06
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		8e-06
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		9e-06
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		1e-05
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		1e-05
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		1e-05
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		1e-05
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		1e-05
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		1e-05
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		1e-05
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		1e-05
2q0b_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-05
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		2e-05
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		2e-05
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		2e-05
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-05
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		2e-05
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-05
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		2e-05
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		2e-05
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		2e-05
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		2e-05
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		2e-05
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		2e-05
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		2e-05
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		2e-05
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		2e-05
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		2e-05
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		2e-05
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		2e-05
1py5_A	326	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		2e-05
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		2e-05
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-05
1b6c_B	342	Crystal Structure Of The Cytoplasmic Domain Of The		2e-05
2py3_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-05
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		2e-05
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		2e-05
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		2e-05
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		2e-05
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		2e-05
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		2e-05
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		2e-05
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		2e-05
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		2e-05
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		2e-05
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		2e-05
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		3e-05
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		3e-05
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		3e-05
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		3e-05
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		3e-05
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		3e-05
3tzm_A	309	Tgf-Beta Receptor Type 1 In Complex With Sb431542 L		3e-05
1rw8_A	301	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		3e-05
2wot_A	306	Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)		3e-05
3uiu_A	306	Crystal Structure Of Apo-Pkr Kinase Domain Length =		3e-05
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		3e-05
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		3e-05
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		3e-05
1vjy_A	303	Crystal Structure Of A Naphthyridine Inhibitor Of H		3e-05
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		3e-05
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		4e-05
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		4e-05
3srv_B	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		4e-05
4fl2_A	636	Structural And Biophysical Characterization Of The		4e-05
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		4e-05
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		5e-05
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		5e-05
4fl3_A	635	Structural And Biophysical Characterization Of The		5e-05
3tub_A	293	Crystal Structure Of Syk Kinase Domain With 1-(5-(6		5e-05
3vf8_A	299	Crystal Structure Of Spleen Tyrosine Kinase Syk Cat		5e-05
3srv_A	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		5e-05
3emg_A	291	Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylami		5e-05
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		5e-05
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		5e-05
1xba_A	291	Crystal Structure Of Apo Syk Tyrosine Kinase Domain		5e-05
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		5e-05
4dfl_A	274	Crystal Structure Of Spleen Tyrosine Kinase Complex		5e-05
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		5e-05
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		5e-05
4f4p_A	273	Syk In Complex With Ligand Lasw836 Length = 273		6e-05
2p55_A	333	X-Ray Structure Of The Human Mitogen-Activated Prot		6e-05
1s9j_A	341	X-Ray Structure Of The Human Mitogen-Activated Prot		6e-05
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		6e-05
3lmg_A	344	Crystal Structure Of The Erbb3 Kinase Domain In Com		6e-05
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		6e-05
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		6e-05
3mbl_A	328	Crystal Structure Of The Human Mitogen-Activated Pr		6e-05
3dv3_A	322	Mek1 With Pf-04622664 Bound Length = 322		6e-05
2uv2_A	287	Crystal Structure Of Human Ste20-Like Kinase Bound		7e-05
3kex_A	325	Crystal Structure Of The Catalytically Inactive Kin		7e-05
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		7e-05
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		7e-05
2ogv_A	317	Crystal Structure Of The Autoinhibited Human C-Fms		7e-05
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		7e-05
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		7e-05
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		7e-05
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		7e-05
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		7e-05
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		7e-05
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		7e-05
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		7e-05
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		7e-05
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		7e-05
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		7e-05
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		7e-05
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		7e-05
3h9r_A	330	Crystal Structure Of The Kinase Domain Of Type I Ac		7e-05
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		8e-05
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		8e-05
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		8e-05
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		8e-05
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		8e-05
3lcd_A	329	Inhibitor Bound To A Dfg-In Structure Of The Kinase		8e-05
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		8e-05
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		8e-05
4dym_A	301	Crystal Structure Of The Acvr1 Kinase Domain In Com		9e-05
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		9e-05
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		9e-05
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		1e-04
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		1e-04
3mtf_A	301	Crystal Structure Of The Acvr1 Kinase In Complex Wi		1e-04
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		1e-04
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		1e-04
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		1e-04
2x4f_A	373	The Crystal Structure Of The Human Myosin Light Cha		1e-04
3blh_A	331	Crystal Structure Of Human Cdk9CYCLINT1 Length = 33		1e-04
3mi9_A	351	Crystal Structure Of Hiv-1 Tat Complexed With Human		1e-04
4ec8_A	373	Structure Of Full Length Cdk9 In Complex With Cycli		1e-04
4eby_A	212	Crystal Structure Of The Ectodomain Of A Receptor L		1e-04
3my0_A	305	Crystal Structure Of The Acvrl1 (Alk1) Kinase Domai		2e-04
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		2e-04
2bfx_B	284	Mechanism Of Aurora-B Activation By Incenp And Inhi		2e-04
1u59_A	287	Crystal Structure Of The Zap-70 Kinase Domain In Co		2e-04
2bfy_A	284	Complex Of Aurora-B With Incenp And Hesperidin. Len		2e-04
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		2e-04
2vrx_A	285	Structure Of Aurora B Kinase In Complex With Zm4474		2e-04
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		2e-04
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		3e-04
4af3_A	292	Human Aurora B Kinase In Complex With Incenp And Vx		3e-04
1p4o_A	322	Structure Of Apo Unactivated Igf-1r Kinase Domain A		3e-04
2jfm_A	325	Crystal Structure Of Human Ste20-Like Kinase (Unlig		3e-04
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		3e-04
2j51_A	325	Crystal Structure Of Human Ste20-Like Kinase Bound		3e-04
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		3e-04
2jfl_A	325	Crystal Structure Of Human Ste20-Like Kinase ( Diph		3e-04
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-04
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-04
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-04
1m7n_A	322	Crystal Structure Of Unactivated Apo Insulin-Like G		4e-04
3lw0_A	304	Igf-1rk In Complex With Ligand Msc1609119a-1 Length		4e-04
1k3a_A	299	Structure Of The Insulin-Like Growth Factor 1 Recep		4e-04
3bea_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A P		4e-04
4bcf_A	331	Structure Of Cdk9 In Complex With Cyclin T And A 2-		4e-04
2zm3_A	308	Complex Structure Of Insulin-Like Growth Factor Rec		4e-04
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		4e-04
4euu_A	319	Structure Of Bx-795 Complexed With Human Tbk1 Kinas		4e-04
2ozo_A	613	Autoinhibited Intact Human Zap-70 Length = 613		4e-04
3i81_A	315	Crystal Structure Of Insulin-Like Growth Factor 1 R		4e-04
3o23_A	305	Human Unphosphorylated Igf1-R Kinase Domain In Comp		5e-04
3qqu_A	301	Cocrystal Structure Of Unphosphorylated Igf With Py		5e-04
4eut_A	396	Structure Of Bx-795 Complexed With Unphosphorylated		5e-04
2oj9_A	307	Structure Of Igf-1r Kinase Domain Complexed With A		5e-04
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		5e-04
1jqh_A	308	Igf-1 Receptor Kinase Domain Length = 308		5e-04
2i1m_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An		5e-04
3d94_A	301	Crystal Structure Of The Insulin-Like Growth Factor		5e-04
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		5e-04
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		5e-04
1rjb_A	344	Crystal Structure Of Flt3 Length = 344		6e-04
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		6e-04
3lvp_A	336	Crystal Structure Of Bisphosphorylated Igf1-R Kinas		7e-04
3zzw_A	289	Crystal Structure Of The Kinase Domain Of Ror2 Leng		8e-04
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		8e-04
4gt4_A	308	Structure Of Unliganded, Inactive Ror2 Kinase Domai		8e-04
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		9e-04
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		9e-04

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 123/273 (45%), Gaps = 51/273 (18%)
Query: 344 SVYRATI-DGKVLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNRF 394
            VY+  + DG ++AVK++KE+ T+        E+ ++    H NL++L G    +   R 
Sbjct: 45  KVYKGRLADGXLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM-TPTERL 103
Query: 395 LVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
           LVY Y  NGS+   L               L W +R R+AL  A GL Y+H+H  P I+H
Sbjct: 104 LVYPYMANGSVASCLRERPESQPP------LDWPKRQRIALGSARGLAYLHDHCDPKIIH 157
Query: 455 RDIRTNNIQLDSRFKAKIANFSLA---------------------AP---ATNDVMPKFD 490
           RD++  NI LD  F+A + +F LA                     AP   +T     K D
Sbjct: 158 RDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGXIGHIAPEYLSTGKSSEKTD 217
Query: 491 VFAFGVVLLELLSGKKA---TRTTENGKTAVL-WKEIXXXXXXXXXXXXXXXNWMDPNLE 546
           VF +GV+LLEL++G++A    R   +    +L W                    +D +L+
Sbjct: 218 VFGYGVMLLELITGQRAFDLARLANDDDVMLLDW-------VKGLLKEKKLEALVDVDLQ 270
Query: 547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVV 579
             Y  +    L  +A  CT    + RP M+EVV
Sbjct: 271 GNYKDEEVEQLIQVALLCTQSSPMERPKMSEVV 303

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score =  108 bits (270), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 136/305 (44%), Gaps = 55/305 (18%)
Query: 316 YLGKPIVYEIEVIMESTMNLSEHYSIGKS----VYRATI-DGKVLAVKKIKEDVTE---- 366
           +LG+   + +  +  ++ N S    +G+     VY+  + DG ++AVK++KE+  +    
Sbjct: 21  HLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGEL 80
Query: 367 ----ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXV 422
               E+ ++    H NL++L G    +   R LVY Y  NGS+   L             
Sbjct: 81  QFQTEVEMISMAVHRNLLRLRGFCM-TPTERLLVYPYMANGSVASCLRERPESQPP---- 135
Query: 423 IFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---- 478
             L W +R R+AL  A GL Y+H+H  P I+HRD++  NI LD  F+A + +F LA    
Sbjct: 136 --LDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMD 193
Query: 479 -----------------AP---ATNDVMPKFDVFAFGVVLLELLSGKKA---TRTTENGK 515
                            AP   +T     K DVF +GV+LLEL++G++A    R   +  
Sbjct: 194 YKDXHVXXAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDD 253
Query: 516 TAVL-WKEIXXXXXXXXXXXXXXXNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPN 574
             +L W                    +D +L+  Y  +    L  +A  CT    + RP 
Sbjct: 254 VMLLDW-------VKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPK 306
Query: 575 MAEVV 579
           M+EVV
Sbjct: 307 MSEVV 311

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 98/195 (50%), Gaps = 46/195 (23%)
Query: 345 VYRATIDGKVLAVKKI-----------KEDVTEELRILQRINHANLVKLMGVSSDSQGNR 393
           VY+  ++   +AVKK+           K+   +E++++ +  H NLV+L+G SSD   + 
Sbjct: 47  VYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGD-DL 105
Query: 394 FLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIV 453
            LVY Y  NGSL   L               L+W  R ++A   ANG+ ++HE+     +
Sbjct: 106 CLVYVYMPNGSLLDRLSCLDGTPP-------LSWHMRCKIAQGAANGINFLHENHH---I 155
Query: 454 HRDIRTNNIQLDSRFKAKIANFSLA----------------------APAT--NDVMPKF 489
           HRDI++ NI LD  F AKI++F LA                      AP     ++ PK 
Sbjct: 156 HRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXXRIVGTTAYMAPEALRGEITPKS 215
Query: 490 DVFAFGVVLLELLSG 504
           D+++FGVVLLE+++G
Sbjct: 216 DIYSFGVVLLEIITG 230

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 98/195 (50%), Gaps = 46/195 (23%)
Query: 345 VYRATIDGKVLAVKKI-----------KEDVTEELRILQRINHANLVKLMGVSSDSQGNR 393
           VY+  ++   +AVKK+           K+   +E++++ +  H NLV+L+G SSD   + 
Sbjct: 47  VYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGD-DL 105
Query: 394 FLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIV 453
            LVY Y  NGSL   L               L+W  R ++A   ANG+ ++HE+     +
Sbjct: 106 CLVYVYMPNGSLLDRLSCLDGTPP-------LSWHMRCKIAQGAANGINFLHENHH---I 155
Query: 454 HRDIRTNNIQLDSRFKAKIANFSLA----------------------APAT--NDVMPKF 489
           HRDI++ NI LD  F AKI++F LA                      AP     ++ PK 
Sbjct: 156 HRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXSRIVGTTAYMAPEALRGEITPKS 215
Query: 490 DVFAFGVVLLELLSG 504
           D+++FGVVLLE+++G
Sbjct: 216 DIYSFGVVLLEIITG 230

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 98/195 (50%), Gaps = 46/195 (23%)
Query: 345 VYRATIDGKVLAVKKI-----------KEDVTEELRILQRINHANLVKLMGVSSDSQGNR 393
           VY+  ++   +AVKK+           K+   +E++++ +  H NLV+L+G SSD   + 
Sbjct: 41  VYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGD-DL 99
Query: 394 FLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIV 453
            LVY Y  NGSL   L               L+W  R ++A   ANG+ ++HE+     +
Sbjct: 100 CLVYVYMPNGSLLDRLSCLDGTPP-------LSWHMRCKIAQGAANGINFLHENHH---I 149
Query: 454 HRDIRTNNIQLDSRFKAKIANFSLA----------------------APAT--NDVMPKF 489
           HRDI++ NI LD  F AKI++F LA                      AP     ++ PK 
Sbjct: 150 HRDIKSANILLDEAFTAKISDFGLARASEKFAQXVMXXRIVGTTAYMAPEALRGEITPKS 209
Query: 490 DVFAFGVVLLELLSG 504
           D+++FGVVLLE+++G
Sbjct: 210 DIYSFGVVLLEIITG 224

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 46/195 (23%)
Query: 345 VYRATIDGKVLAVKKI-----------KEDVTEELRILQRINHANLVKLMGVSSDSQGNR 393
           VY+  ++   +AVKK+           K+   +E+++  +  H NLV+L+G SSD   + 
Sbjct: 38  VYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVXAKCQHENLVELLGFSSDGD-DL 96
Query: 394 FLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIV 453
            LVY Y  NGSL   L               L+W  R ++A   ANG+ ++HE+     +
Sbjct: 97  CLVYVYXPNGSLLDRLSCLDGTPP-------LSWHXRCKIAQGAANGINFLHENHH---I 146
Query: 454 HRDIRTNNIQLDSRFKAKIANFSLA----------------------APAT--NDVMPKF 489
           HRDI++ NI LD  F AKI++F LA                      AP     ++ PK 
Sbjct: 147 HRDIKSANILLDEAFTAKISDFGLARASEKFAQXVXXSRIVGTTAYXAPEALRGEITPKS 206
Query: 490 DVFAFGVVLLELLSG 504
           D+++FGVVLLE+++G
Sbjct: 207 DIYSFGVVLLEIITG 221

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 125/302 (41%), Gaps = 56/302 (18%)
Query: 330 ESTMNLSEHYSIGKSV----YRATI-DGKVLAVKKIKEDVTE-------ELRILQRINHA 377
           E+T N    + IG  V    Y+  + DG  +A+K+   + ++       E+  L    H 
Sbjct: 36  EATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHP 95
Query: 378 NLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDV 437
           +LV L+G   D +    L+Y+Y ENG+L + L+            + ++W QRL + +  
Sbjct: 96  HLVSLIGFC-DERNEMILIYKYMENGNLKRHLY------GSDLPTMSMSWEQRLEICIGA 148
Query: 438 ANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------------- 482
           A GL Y+H  A   I+HRD+++ NI LD  F  KI +F ++   T               
Sbjct: 149 ARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVVKGTL 205
Query: 483 ----------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIXXXX--XXX 530
                       +  K DV++FGVVL E+L  + A   +       L +E+         
Sbjct: 206 GYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQS-------LPREMVNLAEWAVE 258
Query: 531 XXXXXXXXNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE 590
                     +DPNL      +        A  C    S  RP+M +V++ L    +  E
Sbjct: 259 SHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQE 318
Query: 591 TL 592
           ++
Sbjct: 319 SV 320

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 125/302 (41%), Gaps = 56/302 (18%)
Query: 330 ESTMNLSEHYSIGKSV----YRATI-DGKVLAVKKIKEDVTE-------ELRILQRINHA 377
           E+T N    + IG  V    Y+  + DG  +A+K+   + ++       E+  L    H 
Sbjct: 36  EATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHP 95
Query: 378 NLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDV 437
           +LV L+G   D +    L+Y+Y ENG+L + L+            + ++W QRL + +  
Sbjct: 96  HLVSLIGFC-DERNEMILIYKYMENGNLKRHLY------GSDLPTMSMSWEQRLEICIGA 148
Query: 438 ANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------------- 482
           A GL Y+H  A   I+HRD+++ NI LD  F  KI +F ++   T               
Sbjct: 149 ARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVVKGTL 205
Query: 483 ----------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIXXXX--XXX 530
                       +  K DV++FGVVL E+L  + A   +       L +E+         
Sbjct: 206 GYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQS-------LPREMVNLAEWAVE 258
Query: 531 XXXXXXXXNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE 590
                     +DPNL      +        A  C    S  RP+M +V++ L    +  E
Sbjct: 259 SHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQE 318
Query: 591 TL 592
           ++
Sbjct: 319 SV 320

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 95/203 (46%), Gaps = 43/203 (21%)
Query: 333 MNLSEHYSIGK--SVYRATIDGKVLAVKKIKED------VTEELR---ILQRINHANLVK 381
           +N+ E    G   +V+RA   G  +AVK + E       V E LR   I++R+ H N+V 
Sbjct: 39  LNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVL 98
Query: 382 LMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGL 441
            MG  +    N  +V EY   GSL + LH              L   +RL +A DVA G+
Sbjct: 99  FMGAVTQPP-NLSIVTEYLSRGSLYRLLHKSGAREQ-------LDERRRLSMAYDVAKGM 150
Query: 442 QYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------APATNDVMP-- 487
            Y+H    P IVHRD+++ N+ +D ++  K+ +F L+            A  T + M   
Sbjct: 151 NYLHNR-NPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKASXFLXSKXAAGTPEWMAPE 209
Query: 488 ---------KFDVFAFGVVLLEL 501
                    K DV++FGV+L EL
Sbjct: 210 VLRDEPSNEKSDVYSFGVILWEL 232

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 95/203 (46%), Gaps = 43/203 (21%)
Query: 333 MNLSEHYSIGK--SVYRATIDGKVLAVKKIKED------VTEELR---ILQRINHANLVK 381
           +N+ E    G   +V+RA   G  +AVK + E       V E LR   I++R+ H N+V 
Sbjct: 39  LNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVL 98
Query: 382 LMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGL 441
            MG  +    N  +V EY   GSL + LH              L   +RL +A DVA G+
Sbjct: 99  FMGAVTQPP-NLSIVTEYLSRGSLYRLLHKSGAREQ-------LDERRRLSMAYDVAKGM 150
Query: 442 QYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSL------------AAPATNDVMP-- 487
            Y+H    P IVHR++++ N+ +D ++  K+ +F L            +A  T + M   
Sbjct: 151 NYLHNR-NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPE 209
Query: 488 ---------KFDVFAFGVVLLEL 501
                    K DV++FGV+L EL
Sbjct: 210 VLRDEPSNEKSDVYSFGVILWEL 232

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 49/208 (23%)
Query: 343 KSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAEN 402
           KS+     +G+   ++K +E    E+ I+  +NH N+VKL G+  +      +V E+   
Sbjct: 50  KSLILGDSEGETEMIEKFQE-FQREVFIMSNLNHPNIVKLYGLMHNPPR---MVMEFVPC 105
Query: 403 GSLDKWL----HPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIR 458
           G L   L    HP             + WS +LR+ LD+A G++YM ++  P IVHRD+R
Sbjct: 106 GDLYHRLLDKAHP-------------IKWSVKLRLMLDIALGIEYM-QNQNPPIVHRDLR 151
Query: 459 TNNIQLDSRFK-----AKIANFSLA-----------------APAT-----NDVMPKFDV 491
           + NI L S  +     AK+A+FSL+                 AP T          K D 
Sbjct: 152 SPNIFLQSLDENAPVCAKVADFSLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADT 211
Query: 492 FAFGVVLLELLSGKKATRTTENGKTAVL 519
           ++F ++L  +L+G+        GK   +
Sbjct: 212 YSFAMILYTILTGEGPFDEYSYGKIKFI 239

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 42/223 (18%)
Query: 324 EIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTE-----ELRILQRINHAN 378
           EIEV  E  +       + K+ +RA    K +A+K+I+ +        ELR L R+NH N
Sbjct: 10  EIEV--EEVVGRGAFGVVCKAKWRA----KDVAIKQIESESERKAFIVELRQLSRVNHPN 63
Query: 379 LVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVA 438
           +VKL G   +      LV EYAE GSL   LH           + + T +  +   L  +
Sbjct: 64  IVKLYGACLNPV---CLVMEYAEGGSLYNVLH-------GAEPLPYYTAAHAMSWCLQCS 113
Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA-KIANFSLA-----------------AP 480
            G+ Y+H     +++HRD++  N+ L +     KI +F  A                 AP
Sbjct: 114 QGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAP 173
Query: 481 AT---NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLW 520
                ++   K DVF++G++L E+++ +K           ++W
Sbjct: 174 EVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMW 216

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 99/223 (44%), Gaps = 42/223 (18%)
Query: 324 EIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTE-----ELRILQRINHAN 378
           EIEV  E  +       + K+ +RA    K +A+K+I+ +        ELR L R+NH N
Sbjct: 9   EIEV--EEVVGRGAFGVVCKAKWRA----KDVAIKQIESESERKAFIVELRQLSRVNHPN 62
Query: 379 LVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVA 438
           +VKL G   +      LV EYAE GSL   LH           + + T +  +   L  +
Sbjct: 63  IVKLYGACLNPV---CLVMEYAEGGSLYNVLH-------GAEPLPYYTAAHAMSWCLQCS 112
Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA-KIANFSLA-----------------AP 480
            G+ Y+H     +++HRD++  N+ L +     KI +F  A                 AP
Sbjct: 113 QGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAP 172
Query: 481 AT---NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLW 520
                ++   K DVF++G++L E+++ +K           ++W
Sbjct: 173 EVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMW 215

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 49/208 (23%)
Query: 343 KSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAEN 402
           KS+     +G+   ++K +E    E+ I+  +NH N+VKL G+  +      +V E+   
Sbjct: 50  KSLILGDSEGETEMIEKFQE-FQREVFIMSNLNHPNIVKLYGLMHNPPR---MVMEFVPC 105
Query: 403 GSLDKWL----HPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIR 458
           G L   L    HP             + WS +LR+ LD+A G++YM ++  P IVHRD+R
Sbjct: 106 GDLYHRLLDKAHP-------------IKWSVKLRLMLDIALGIEYM-QNQNPPIVHRDLR 151
Query: 459 TNNIQLDSRFK-----AKIANFSLA-----------------APAT-----NDVMPKFDV 491
           + NI L S  +     AK+A+F L+                 AP T          K D 
Sbjct: 152 SPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADT 211
Query: 492 FAFGVVLLELLSGKKATRTTENGKTAVL 519
           ++F ++L  +L+G+        GK   +
Sbjct: 212 YSFAMILYTILTGEGPFDEYSYGKIKFI 239

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 36/177 (20%)
Query: 352 GKVLAVKKIKEDVTE-----ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           G  +AVK IK D T      E  ++ ++ H+NLV+L+GV  + +G  ++V EY   GSL 
Sbjct: 216 GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLV 275
Query: 407 KWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS 466
            +L               L     L+ +LDV   ++Y+  +   + VHRD+   N+ +  
Sbjct: 276 DYLRSRGRS--------VLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSE 324
Query: 467 RFKAKIANFSLA--APATNDV--MP----------------KFDVFAFGVVLLELLS 503
              AK+++F L   A +T D   +P                K DV++FG++L E+ S
Sbjct: 325 DNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYS 381

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 49/208 (23%)
Query: 343 KSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAEN 402
           KS+     +G+   ++K +E    E+ I+  +NH N+VKL G+  +      +V E+   
Sbjct: 50  KSLILGDSEGETEMIEKFQE-FQREVFIMSNLNHPNIVKLYGLMHNPPR---MVMEFVPC 105
Query: 403 GSLDKWL----HPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIR 458
           G L   L    HP             + WS +LR+ LD+A G++YM ++  P IVHRD+R
Sbjct: 106 GDLYHRLLDKAHP-------------IKWSVKLRLMLDIALGIEYM-QNQNPPIVHRDLR 151
Query: 459 TNNIQLDSRFK-----AKIA-----------------NFSLAAPAT-----NDVMPKFDV 491
           + NI L S  +     AK+A                 NF   AP T          K D 
Sbjct: 152 SPNIFLQSLDENAPVCAKVADFGTSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADT 211
Query: 492 FAFGVVLLELLSGKKATRTTENGKTAVL 519
           ++F ++L  +L+G+        GK   +
Sbjct: 212 YSFAMILYTILTGEGPFDEYSYGKIKFI 239

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 36/177 (20%)
Query: 352 GKVLAVKKIKEDVTE-----ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           G  +AVK IK D T      E  ++ ++ H+NLV+L+GV  + +G  ++V EY   GSL 
Sbjct: 35  GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLV 94
Query: 407 KWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS 466
            +L               L     L+ +LDV   ++Y+  +   + VHRD+   N+ +  
Sbjct: 95  DYLRSRGRS--------VLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSE 143
Query: 467 RFKAKIANFSLA--APATNDV--MP----------------KFDVFAFGVVLLELLS 503
              AK+++F L   A +T D   +P                K DV++FG++L E+ S
Sbjct: 144 DNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREAAFSTKSDVWSFGILLWEIYS 200

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 36/177 (20%)
Query: 352 GKVLAVKKIKEDVTE-----ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           G  +AVK IK D T      E  ++ ++ H+NLV+L+GV  + +G  ++V EY   GSL 
Sbjct: 44  GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLV 103
Query: 407 KWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS 466
            +L               L     L+ +LDV   ++Y+  +   + VHRD+   N+ +  
Sbjct: 104 DYLRSRGRS--------VLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSE 152
Query: 467 RFKAKIANFSLA--APATNDV--MP----------------KFDVFAFGVVLLELLS 503
              AK+++F L   A +T D   +P                K DV++FG++L E+ S
Sbjct: 153 DNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYS 209

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 36/177 (20%)
Query: 352 GKVLAVKKIKEDVTE-----ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           G  +AVK IK D T      E  ++ ++ H+NLV+L+GV  + +G  ++V EY   GSL 
Sbjct: 29  GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLV 88
Query: 407 KWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS 466
            +L               L     L+ +LDV   ++Y+  +   + VHRD+   N+ +  
Sbjct: 89  DYLRSRGRS--------VLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSE 137
Query: 467 RFKAKIANFSLA--APATNDV--MP----------------KFDVFAFGVVLLELLS 503
              AK+++F L   A +T D   +P                K DV++FG++L E+ S
Sbjct: 138 DNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYS 194

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 54/225 (24%)
Query: 331 STMNLSEHYSIGK--SVYRATIDGKVLAVKKIKED-----------VTEELRILQRINHA 377
           + + L E   IG    VYRA   G  +AVK  + D           V +E ++   + H 
Sbjct: 7   AELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHP 66
Query: 378 NLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDV 437
           N++ L GV    + N  LV E+A  G L++ L             I + W      A+ +
Sbjct: 67  NIIALRGVCL-KEPNLCLVMEFARGGPLNRVLSGKRIPPD-----ILVNW------AVQI 114
Query: 438 ANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK--------AKIANFSL-----------A 478
           A G+ Y+H+ A   I+HRD++++NI +  + +         KI +F L           A
Sbjct: 115 ARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSA 174
Query: 479 APATNDVMPKF----------DVFAFGVVLLELLSGKKATRTTEN 513
           A A   + P+           DV+++GV+L ELL+G+   R  + 
Sbjct: 175 AGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDG 219

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 47/187 (25%)
Query: 352 GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRF-LVYEYAEN 402
           G+ +AVK +K         D+ +E+ IL+ + H N+VK  G+ ++  GN   L+ E+  +
Sbjct: 50  GEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPS 109
Query: 403 GSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNI 462
           GSL ++L               +   Q+L+ A+ +  G+ Y+        VHRD+   N+
Sbjct: 110 GSLKEYLPKNKNK---------INLKQQLKYAVQICKGMDYL---GSRQYVHRDLAARNV 157
Query: 463 QLDSRFKAKIANFSLAAPATND----------------------VMPKF----DVFAFGV 496
            ++S  + KI +F L      D                      +  KF    DV++FGV
Sbjct: 158 LVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGV 217
Query: 497 VLLELLS 503
            L ELL+
Sbjct: 218 TLHELLT 224

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 47/187 (25%)
Query: 352 GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRF-LVYEYAEN 402
           G+ +AVK +K         D+ +E+ IL+ + H N+VK  G+ ++  GN   L+ E+  +
Sbjct: 38  GEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPS 97
Query: 403 GSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNI 462
           GSL ++L               +   Q+L+ A+ +  G+ Y+        VHRD+   N+
Sbjct: 98  GSLKEYLPKNKNK---------INLKQQLKYAVQICKGMDYL---GSRQYVHRDLAARNV 145
Query: 463 QLDSRFKAKIANFSLAAPATND----------------------VMPKF----DVFAFGV 496
            ++S  + KI +F L      D                      +  KF    DV++FGV
Sbjct: 146 LVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGV 205
Query: 497 VLLELLS 503
            L ELL+
Sbjct: 206 TLHELLT 212

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 119/274 (43%), Gaps = 63/274 (22%)
Query: 356 AVKKIKE--------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           A+K++KE        D   EL +L ++ +H N++ L+G + + +G  +L  EYA +G+L 
Sbjct: 56  AIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLG-ACEHRGYLYLAIEYAPHGNLL 114
Query: 407 KWLHPXXXXXXXXXXVIF------LTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTN 460
            +L             I       L+  Q L  A DVA G+ Y+   +Q   +HRD+   
Sbjct: 115 DFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYL---SQKQFIHRDLAAR 171
Query: 461 NIQLDSRFKAKIANFSLA------APATNDVMP----------------KFDVFAFGVVL 498
           NI +   + AKIA+F L+         T   +P                  DV+++GV+L
Sbjct: 172 NILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLL 231
Query: 499 LELLSGKKATRTTENGKT-AVLWKEIXXXXXXXXXXXXXXXNWMDPNLESFYPIDGALSL 557
            E++S      T   G T A L++++                     LE   P++    +
Sbjct: 232 WEIVS---LGGTPYCGMTCAELYEKLPQGY----------------RLEK--PLNCDDEV 270
Query: 558 ATLARACTMDKSLSRPNMAEVVFNLSVLTQSTET 591
             L R C  +K   RP+ A+++ +L+ + +  +T
Sbjct: 271 YDLMRQCWREKPYERPSFAQILVSLNRMLEERKT 304

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 119/274 (43%), Gaps = 63/274 (22%)
Query: 356 AVKKIKE--------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           A+K++KE        D   EL +L ++ +H N++ L+G + + +G  +L  EYA +G+L 
Sbjct: 46  AIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLG-ACEHRGYLYLAIEYAPHGNLL 104
Query: 407 KWLHPXXXXXXXXXXVIF------LTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTN 460
            +L             I       L+  Q L  A DVA G+ Y+   +Q   +HRD+   
Sbjct: 105 DFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYL---SQKQFIHRDLAAR 161
Query: 461 NIQLDSRFKAKIANFSLA------APATNDVMP----------------KFDVFAFGVVL 498
           NI +   + AKIA+F L+         T   +P                  DV+++GV+L
Sbjct: 162 NILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLL 221
Query: 499 LELLSGKKATRTTENGKT-AVLWKEIXXXXXXXXXXXXXXXNWMDPNLESFYPIDGALSL 557
            E++S      T   G T A L++++                     LE   P++    +
Sbjct: 222 WEIVS---LGGTPYCGMTCAELYEKLPQGY----------------RLEK--PLNCDDEV 260
Query: 558 ATLARACTMDKSLSRPNMAEVVFNLSVLTQSTET 591
             L R C  +K   RP+ A+++ +L+ + +  +T
Sbjct: 261 YDLMRQCWREKPYERPSFAQILVSLNRMLEERKT 294

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 38/197 (19%)
Query: 331 STMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQ 390
           + + L+ H   GK V    ID   L    +++ +  E+RI++ +NH N+VKL  V  +++
Sbjct: 28  AKVKLARHILTGKEVAVKIIDKTQLNSSSLQK-LFREVRIMKVLNHPNIVKLFEVI-ETE 85
Query: 391 GNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
              +LV EYA  G +  +L              F            + + +QY H   Q 
Sbjct: 86  KTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFR----------QIVSAVQYCH---QK 132
Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSL-------------------AAP----ATNDVMP 487
            IVHRD++  N+ LD+    KIA+F                     AAP          P
Sbjct: 133 FIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGP 192
Query: 488 KFDVFAFGVVLLELLSG 504
           + DV++ GV+L  L+SG
Sbjct: 193 EVDVWSLGVILYTLVSG 209

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 38/197 (19%)
Query: 331 STMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQ 390
           + + L+ H   GK V    ID   L    +++ +  E+RI++ +NH N+VKL  V  +++
Sbjct: 28  AKVKLARHILTGKEVAVKIIDKTQLNSSSLQK-LFREVRIMKVLNHPNIVKLFEVI-ETE 85
Query: 391 GNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
              +LV EYA  G +  +L              F            + + +QY H   Q 
Sbjct: 86  KTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQ----------IVSAVQYCH---QK 132
Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSL-------------------AAP----ATNDVMP 487
            IVHRD++  N+ LD+    KIA+F                     AAP          P
Sbjct: 133 FIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDAFCGAPPYAAPELFQGKKYDGP 192
Query: 488 KFDVFAFGVVLLELLSG 504
           + DV++ GV+L  L+SG
Sbjct: 193 EVDVWSLGVILYTLVSG 209

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 38/197 (19%)
Query: 331 STMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQ 390
           + + L+ H   GK V    ID   L    +++ +  E+RI++ +NH N+VKL  V  +++
Sbjct: 28  AKVKLARHILTGKEVAVKIIDKTQLNSSSLQK-LFREVRIMKVLNHPNIVKLFEVI-ETE 85
Query: 391 GNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
              +LV EYA  G +  +L              F            + + +QY H   Q 
Sbjct: 86  KTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFR----------QIVSAVQYCH---QK 132
Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSL-------------------AAP----ATNDVMP 487
            IVHRD++  N+ LD+    KIA+F                     AAP          P
Sbjct: 133 FIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGP 192
Query: 488 KFDVFAFGVVLLELLSG 504
           + DV++ GV+L  L+SG
Sbjct: 193 EVDVWSLGVILYTLVSG 209

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 38/197 (19%)
Query: 331 STMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQ 390
           + + L+ H   GK V    ID   L    +++ +  E+RI++ +NH N+VKL  V  +++
Sbjct: 28  AKVKLARHILTGKEVAVRIIDKTQLNSSSLQK-LFREVRIMKVLNHPNIVKLFEVI-ETE 85
Query: 391 GNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
              +LV EYA  G +  +L              F            + + +QY H   Q 
Sbjct: 86  KTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFR----------QIVSAVQYCH---QK 132
Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSL-------------------AAP----ATNDVMP 487
            IVHRD++  N+ LD+    KIA+F                     AAP          P
Sbjct: 133 FIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGP 192
Query: 488 KFDVFAFGVVLLELLSG 504
           + DV++ GV+L  L+SG
Sbjct: 193 EVDVWSLGVILYTLVSG 209

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 38/197 (19%)
Query: 331 STMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQ 390
           + + L+ H   GK V    ID   L    +++ +  E+RI++ +NH N+VKL  V  +++
Sbjct: 28  AKVKLARHILTGKEVAVRIIDKTQLNSSSLQK-LFREVRIMKVLNHPNIVKLFEVI-ETE 85
Query: 391 GNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
              +LV EYA  G +  +L              F            + + +QY H   Q 
Sbjct: 86  KTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQ----------IVSAVQYCH---QK 132
Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSL-------------------AAP----ATNDVMP 487
            IVHRD++  N+ LD+    KIA+F                     AAP          P
Sbjct: 133 FIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDEFCGSPPYAAPELFQGKKYDGP 192
Query: 488 KFDVFAFGVVLLELLSG 504
           + DV++ GV+L  L+SG
Sbjct: 193 EVDVWSLGVILYTLVSG 209

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 45/215 (20%)
Query: 321 IVYEIEVIMESTMNLSEHYSI----GKSVYRATID-GKVLAVKKIKEDVTEELRILQRIN 375
           IV+  EVI         H ++    GK ++ A     ++  + ++ + +TE + I++  +
Sbjct: 30  IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI-IMKDFS 88
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N++ L+G+   S+G+  +V  Y ++G L  ++            + F          L
Sbjct: 89  HPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGF---------GL 139
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------- 478
            VA G++Y+   A    VHRD+   N  LD +F  K+A+F LA                 
Sbjct: 140 QVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEXXSVHNKTGA 196
Query: 479 ----------APATNDVMPKFDVFAFGVVLLELLS 503
                     +  T     K DV++FGV+L EL++
Sbjct: 197 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 231

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 45/215 (20%)
Query: 321 IVYEIEVIMESTMNLSEHYSI----GKSVYRATID-GKVLAVKKIKEDVTEELRILQRIN 375
           IV+  EVI         H ++    GK ++ A     ++  + ++ + +TE + I++  +
Sbjct: 23  IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI-IMKDFS 81
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N++ L+G+   S+G+  +V  Y ++G L  ++            + F          L
Sbjct: 82  HPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGF---------GL 132
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------- 478
            VA G++Y+   A    VHRD+   N  LD +F  K+A+F LA                 
Sbjct: 133 QVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 189
Query: 479 ----------APATNDVMPKFDVFAFGVVLLELLS 503
                     +  T     K DV++FGV+L EL++
Sbjct: 190 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 224

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 45/215 (20%)
Query: 321 IVYEIEVIMESTMNLSEHYSI----GKSVYRATID-GKVLAVKKIKEDVTEELRILQRIN 375
           IV+  EVI         H ++    GK ++ A     ++  + ++ + +TE + I++  +
Sbjct: 26  IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI-IMKDFS 84
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N++ L+G+   S+G+  +V  Y ++G L  ++            + F          L
Sbjct: 85  HPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGF---------GL 135
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------- 478
            VA G++Y+   A    VHRD+   N  LD +F  K+A+F LA                 
Sbjct: 136 QVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 192
Query: 479 ----------APATNDVMPKFDVFAFGVVLLELLS 503
                     +  T     K DV++FGV+L EL++
Sbjct: 193 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 227

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 45/215 (20%)
Query: 321 IVYEIEVIMESTMNLSEHYSI----GKSVYRATID-GKVLAVKKIKEDVTEELRILQRIN 375
           IV+  EVI         H ++    GK ++ A     ++  + ++ + +TE + I++  +
Sbjct: 31  IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI-IMKDFS 89
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N++ L+G+   S+G+  +V  Y ++G L  ++            + F          L
Sbjct: 90  HPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGF---------GL 140
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------- 478
            VA G++Y+   A    VHRD+   N  LD +F  K+A+F LA                 
Sbjct: 141 QVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 197
Query: 479 ----------APATNDVMPKFDVFAFGVVLLELLS 503
                     +  T     K DV++FGV+L EL++
Sbjct: 198 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 232

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 45/215 (20%)
Query: 321 IVYEIEVIMESTMNLSEHYSI----GKSVYRATID-GKVLAVKKIKEDVTEELRILQRIN 375
           IV+  EVI         H ++    GK ++ A     ++  + ++ + +TE + I++  +
Sbjct: 29  IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI-IMKDFS 87
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N++ L+G+   S+G+  +V  Y ++G L  ++            + F          L
Sbjct: 88  HPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGF---------GL 138
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------- 478
            VA G++Y+   A    VHRD+   N  LD +F  K+A+F LA                 
Sbjct: 139 QVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 195
Query: 479 ----------APATNDVMPKFDVFAFGVVLLELLS 503
                     +  T     K DV++FGV+L EL++
Sbjct: 196 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 230

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 45/215 (20%)
Query: 321 IVYEIEVIMESTMNLSEHYSI----GKSVYRATID-GKVLAVKKIKEDVTEELRILQRIN 375
           IV+  EVI         H ++    GK ++ A     ++  + ++ + +TE + I++  +
Sbjct: 49  IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI-IMKDFS 107
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N++ L+G+   S+G+  +V  Y ++G L  ++            + F          L
Sbjct: 108 HPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGF---------GL 158
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------- 478
            VA G++Y+   A    VHRD+   N  LD +F  K+A+F LA                 
Sbjct: 159 QVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 215
Query: 479 ----------APATNDVMPKFDVFAFGVVLLELLS 503
                     +  T     K DV++FGV+L EL++
Sbjct: 216 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 250

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 45/215 (20%)
Query: 321 IVYEIEVIMESTMNLSEHYSI----GKSVYRATID-GKVLAVKKIKEDVTEELRILQRIN 375
           IV+  EVI         H ++    GK ++ A     ++  + ++ + +TE + I++  +
Sbjct: 50  IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI-IMKDFS 108
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N++ L+G+   S+G+  +V  Y ++G L  ++            + F          L
Sbjct: 109 HPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGF---------GL 159
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------- 478
            VA G++Y+   A    VHRD+   N  LD +F  K+A+F LA                 
Sbjct: 160 QVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 216
Query: 479 ----------APATNDVMPKFDVFAFGVVLLELLS 503
                     +  T     K DV++FGV+L EL++
Sbjct: 217 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 251

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 45/215 (20%)
Query: 321 IVYEIEVIMESTMNLSEHYSI----GKSVYRATID-GKVLAVKKIKEDVTEELRILQRIN 375
           IV+  EVI         H ++    GK ++ A     ++  + ++ + +TE + I++  +
Sbjct: 30  IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI-IMKDFS 88
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N++ L+G+   S+G+  +V  Y ++G L  ++            + F          L
Sbjct: 89  HPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGF---------GL 139
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------- 478
            VA G++Y+   A    VHRD+   N  LD +F  K+A+F LA                 
Sbjct: 140 QVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 196
Query: 479 ----------APATNDVMPKFDVFAFGVVLLELLS 503
                     +  T     K DV++FGV+L EL++
Sbjct: 197 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 231

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 45/215 (20%)
Query: 321 IVYEIEVIMESTMNLSEHYSI----GKSVYRATID-GKVLAVKKIKEDVTEELRILQRIN 375
           IV+  EVI         H ++    GK ++ A     ++  + ++ + +TE + I++  +
Sbjct: 28  IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI-IMKDFS 86
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N++ L+G+   S+G+  +V  Y ++G L  ++            + F          L
Sbjct: 87  HPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGF---------GL 137
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------- 478
            VA G++Y+   A    VHRD+   N  LD +F  K+A+F LA                 
Sbjct: 138 QVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 194
Query: 479 ----------APATNDVMPKFDVFAFGVVLLELLS 503
                     +  T     K DV++FGV+L EL++
Sbjct: 195 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 229

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 45/215 (20%)
Query: 321 IVYEIEVIMESTMNLSEHYSI----GKSVYRATID-GKVLAVKKIKEDVTEELRILQRIN 375
           IV+  EVI         H ++    GK ++ A     ++  + ++ + +TE + I++  +
Sbjct: 31  IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI-IMKDFS 89
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N++ L+G+   S+G+  +V  Y ++G L  ++            + F          L
Sbjct: 90  HPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGF---------GL 140
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------- 478
            VA G++Y+   A    VHRD+   N  LD +F  K+A+F LA                 
Sbjct: 141 QVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGA 197
Query: 479 ----------APATNDVMPKFDVFAFGVVLLELLS 503
                     +  T     K DV++FGV+L EL++
Sbjct: 198 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 232

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 38/197 (19%)
Query: 331 STMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQ 390
           + + L+ H   GK V    ID   L    +++ +  E+RI++ +NH N+VKL  V  +++
Sbjct: 21  AKVKLARHILTGKEVAVKIIDKTQLNSSSLQK-LFREVRIMKVLNHPNIVKLFEVI-ETE 78
Query: 391 GNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
              +LV EYA  G +  +L              F            + + +QY H   Q 
Sbjct: 79  KTLYLVMEYASGGEVFDYLVAHGWMKEKEARAKFRQ----------IVSAVQYCH---QK 125
Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSL-------------------AAP----ATNDVMP 487
            IVHRD++  N+ LD+    KIA+F                     AAP          P
Sbjct: 126 FIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGP 185
Query: 488 KFDVFAFGVVLLELLSG 504
           + DV++ GV+L  L+SG
Sbjct: 186 EVDVWSLGVILYTLVSG 202

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 39/177 (22%)
Query: 353 KVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPX 412
           KV   +K + D   E  I+ + +H N+++L GV + S+    +V EY ENGSLD +L   
Sbjct: 82  KVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSK-PVMIVTEYMENGSLDSFLRKH 140
Query: 413 XXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI 472
                        T  Q + +   +A+G++Y+ +      VHRD+   NI ++S    K+
Sbjct: 141 DAQ---------FTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKV 188
Query: 473 ANFSLAAPATND----------------------VMPKF----DVFAFGVVLLELLS 503
           ++F LA    +D                         KF    DV+++G+VL E++S
Sbjct: 189 SDFGLARVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 38/197 (19%)
Query: 331 STMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQ 390
           + + L+ H   G+ V    ID   L    +++ +  E+RI++ +NH N+VKL  V  +++
Sbjct: 29  AKVKLARHVLTGREVAVKIIDKTQLNPTSLQK-LFREVRIMKILNHPNIVKLFEVI-ETE 86
Query: 391 GNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
              +LV EYA  G +  +L              F            + + +QY H   Q 
Sbjct: 87  KTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQ----------IVSAVQYCH---QK 133
Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSL-------------------AAP----ATNDVMP 487
            IVHRD++  N+ LD     KIA+F                     AAP          P
Sbjct: 134 YIVHRDLKAENLLLDGDMNIKIADFGFSNEFTVGNKLDTFCGSPPYAAPELFQGKKYDGP 193
Query: 488 KFDVFAFGVVLLELLSG 504
           + DV++ GV+L  L+SG
Sbjct: 194 EVDVWSLGVILYTLVSG 210

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 110/289 (38%), Gaps = 68/289 (23%)
Query: 344 SVYRATIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRF 394
           +VY+    G V AVK +          +    E+ +L++  H N++  MG S+  Q    
Sbjct: 25  TVYKGKWHGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQ--LA 81
Query: 395 LVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
           +V ++ E  SL   LH           +          +A   A G+ Y+H     SI+H
Sbjct: 82  IVTQWCEGSSLYHHLHIIETKFEMIKLI---------DIARQTAQGMDYLHA---KSIIH 129
Query: 455 RDIRTNNIQLDSRFKAKIANFSLA----------------------APAT---NDVMP-- 487
           RD+++NNI L      KI +F LA                      AP      D  P  
Sbjct: 130 RDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYS 189
Query: 488 -KFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIXXXXXXXXXXXXXXXNWMDPNLE 546
            + DV+AFG+VL EL++G+       N    +                     ++ P+L 
Sbjct: 190 FQSDVYAFGIVLYELMTGQLPYSNINNRDQIIF---------------MVGRGYLSPDLS 234
Query: 547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTETLERS 595
                +   ++  L   C   K   RP   +++ ++ +L +S   + RS
Sbjct: 235 KVRS-NCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSLPKIHRS 282

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 119/274 (43%), Gaps = 63/274 (22%)
Query: 356 AVKKIKE--------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           A+K++KE        D   EL +L ++ +H N++ L+G + + +G  +L  EYA +G+L 
Sbjct: 53  AIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLG-ACEHRGYLYLAIEYAPHGNLL 111
Query: 407 KWLHPXXXXXXXXXXVIF------LTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTN 460
            +L             I       L+  Q L  A DVA G+ Y+   +Q   +HR++   
Sbjct: 112 DFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYL---SQKQFIHRNLAAR 168
Query: 461 NIQLDSRFKAKIANFSLA------APATNDVMP----------------KFDVFAFGVVL 498
           NI +   + AKIA+F L+         T   +P                  DV+++GV+L
Sbjct: 169 NILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLL 228
Query: 499 LELLSGKKATRTTENGKT-AVLWKEIXXXXXXXXXXXXXXXNWMDPNLESFYPIDGALSL 557
            E++S      T   G T A L++++                     LE   P++    +
Sbjct: 229 WEIVS---LGGTPYCGMTCAELYEKLPQGY----------------RLEK--PLNCDDEV 267
Query: 558 ATLARACTMDKSLSRPNMAEVVFNLSVLTQSTET 591
             L R C  +K   RP+ A+++ +L+ + +  +T
Sbjct: 268 YDLMRQCWREKPYERPSFAQILVSLNRMLEERKT 301

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 85/197 (43%), Gaps = 38/197 (19%)
Query: 331 STMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQ 390
           + + L+ H   GK V    ID   L    +++ +  E+RI + +NH N+VKL  V  +++
Sbjct: 28  AKVKLARHILTGKEVAVKIIDKTQLNSSSLQK-LFREVRIXKVLNHPNIVKLFEVI-ETE 85
Query: 391 GNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
              +LV EYA  G +  +L              F            + + +QY H   Q 
Sbjct: 86  KTLYLVXEYASGGEVFDYLVAHGRXKEKEARAKFRQ----------IVSAVQYCH---QK 132
Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSL-------------------AAP----ATNDVMP 487
            IVHRD++  N+ LD+    KIA+F                     AAP          P
Sbjct: 133 FIVHRDLKAENLLLDADXNIKIADFGFSNEFTFGNKLDAFCGAPPYAAPELFQGKKYDGP 192
Query: 488 KFDVFAFGVVLLELLSG 504
           + DV++ GV+L  L+SG
Sbjct: 193 EVDVWSLGVILYTLVSG 209

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 38/197 (19%)
Query: 331 STMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQ 390
           + + L+ H   G+ V    ID   L    +++ +  E+RI++ +NH N+VKL  V  +++
Sbjct: 29  AKVKLARHILTGREVAIKIIDKTQLNPTSLQK-LFREVRIMKILNHPNIVKLFEVI-ETE 86
Query: 391 GNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
              +L+ EYA  G +  +L              F            + + +QY H   Q 
Sbjct: 87  KTLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQ----------IVSAVQYCH---QK 133
Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSL-------------------AAP----ATNDVMP 487
            IVHRD++  N+ LD+    KIA+F                     AAP          P
Sbjct: 134 RIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGP 193
Query: 488 KFDVFAFGVVLLELLSG 504
           + DV++ GV+L  L+SG
Sbjct: 194 EVDVWSLGVILYTLVSG 210

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 99/257 (38%), Gaps = 58/257 (22%)
Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLT 426
           E+ +L++  H N++  MG S+  Q    +V ++ E  SL   LH           +    
Sbjct: 74  EVGVLRKTRHVNILLFMGYSTKPQ--LAIVTQWCEGSSLYHHLHIIETKFEMIKLI---- 127
Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA-------- 478
                 +A   A G+ Y+H     SI+HRD+++NNI L      KI +F LA        
Sbjct: 128 -----DIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSG 179
Query: 479 --------------APAT---NDVMP---KFDVFAFGVVLLELLSGKKATRTTENGKTAV 518
                         AP      D  P   + DV+AFG+VL EL++G+       N    +
Sbjct: 180 SHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQII 239
Query: 519 LWKEIXXXXXXXXXXXXXXXNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEV 578
                                ++ P+L      +   ++  L   C   K   RP   ++
Sbjct: 240 F---------------MVGRGYLSPDLSKVRS-NCPKAMKRLMAECLKKKRDERPLFPQI 283
Query: 579 VFNLSVLTQSTETLERS 595
           + ++ +L +S   + RS
Sbjct: 284 LASIELLARSLPKIHRS 300

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 45/215 (20%)
Query: 321 IVYEIEVIMESTMNLSEHYSI----GKSVYRATID-GKVLAVKKIKEDVTEELRILQRIN 375
           IV+  EVI         H ++    GK ++ A     ++  + ++ + +TE + I++  +
Sbjct: 90  IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI-IMKDFS 148
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N++ L+G+   S+G+  +V  Y ++G L  ++            + F          L
Sbjct: 149 HPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGF---------GL 199
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------- 478
            VA G++++   A    VHRD+   N  LD +F  K+A+F LA                 
Sbjct: 200 QVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGA 256
Query: 479 ----------APATNDVMPKFDVFAFGVVLLELLS 503
                     +  T     K DV++FGV+L EL++
Sbjct: 257 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 291

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 45/215 (20%)
Query: 321 IVYEIEVIMESTMNLSEHYSI----GKSVYRATID-GKVLAVKKIKEDVTEELRILQRIN 375
           IV+  EVI         H ++    GK ++ A     ++  + ++ + +TE + I++  +
Sbjct: 36  IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI-IMKDFS 94
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N++ L+G+   S+G+  +V  Y ++G L  ++            + F          L
Sbjct: 95  HPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGF---------GL 145
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------- 478
            VA G++++   A    VHRD+   N  LD +F  K+A+F LA                 
Sbjct: 146 QVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGA 202
Query: 479 ----------APATNDVMPKFDVFAFGVVLLELLS 503
                     +  T     K DV++FGV+L EL++
Sbjct: 203 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 237

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 45/215 (20%)
Query: 321 IVYEIEVIMESTMNLSEHYSI----GKSVYRATID-GKVLAVKKIKEDVTEELRILQRIN 375
           IV+  EVI         H ++    GK ++ A     ++  + ++ + +TE + I++  +
Sbjct: 32  IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI-IMKDFS 90
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N++ L+G+   S+G+  +V  Y ++G L  ++            + F          L
Sbjct: 91  HPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGF---------GL 141
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------- 478
            VA G++++   A    VHRD+   N  LD +F  K+A+F LA                 
Sbjct: 142 QVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMLDKEFDSVHNKTGA 198
Query: 479 ----------APATNDVMPKFDVFAFGVVLLELLS 503
                     +  T     K DV++FGV+L EL++
Sbjct: 199 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 233

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 45/215 (20%)
Query: 321 IVYEIEVIMESTMNLSEHYSI----GKSVYRATID-GKVLAVKKIKEDVTEELRILQRIN 375
           IV+  EVI         H ++    GK ++ A     ++  + ++ + +TE + I++  +
Sbjct: 32  IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI-IMKDFS 90
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N++ L+G+   S+G+  +V  Y ++G L  ++            + F          L
Sbjct: 91  HPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGF---------GL 141
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------- 478
            VA G++++   A    VHRD+   N  LD +F  K+A+F LA                 
Sbjct: 142 QVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGA 198
Query: 479 ----------APATNDVMPKFDVFAFGVVLLELLS 503
                     +  T     K DV++FGV+L EL++
Sbjct: 199 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 233

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 45/215 (20%)
Query: 321 IVYEIEVIMESTMNLSEHYSI----GKSVYRATID-GKVLAVKKIKEDVTEELRILQRIN 375
           IV+  EVI         H ++    GK ++ A     ++  + ++ + +TE + I++  +
Sbjct: 31  IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI-IMKDFS 89
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N++ L+G+   S+G+  +V  Y ++G L  ++            + F          L
Sbjct: 90  HPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGF---------GL 140
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------- 478
            VA G++++   A    VHRD+   N  LD +F  K+A+F LA                 
Sbjct: 141 QVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGA 197
Query: 479 ----------APATNDVMPKFDVFAFGVVLLELLS 503
                     +  T     K DV++FGV+L EL++
Sbjct: 198 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 232

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 38/197 (19%)
Query: 331 STMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQ 390
           + + L+ H   G+ V    ID   L    +++ +  E+RI++ +NH N+VKL  V  +++
Sbjct: 26  AKVKLARHILTGREVAIKIIDKTQLNPTSLQK-LFREVRIMKILNHPNIVKLFEVI-ETE 83
Query: 391 GNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
              +L+ EYA  G +  +L              F            + + +QY H   Q 
Sbjct: 84  KTLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQ----------IVSAVQYCH---QK 130
Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSL-------------------AAP----ATNDVMP 487
            IVHRD++  N+ LD+    KIA+F                     AAP          P
Sbjct: 131 RIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDTFCGSPPYAAPELFQGKKYDGP 190
Query: 488 KFDVFAFGVVLLELLSG 504
           + DV++ GV+L  L+SG
Sbjct: 191 EVDVWSLGVILYTLVSG 207

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 45/215 (20%)
Query: 321 IVYEIEVIMESTMNLSEHYSI----GKSVYRATID-GKVLAVKKIKEDVTEELRILQRIN 375
           IV+  EVI         H ++    GK ++ A     ++  + ++ + +TE + I++  +
Sbjct: 31  IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI-IMKDFS 89
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N++ L+G+   S+G+  +V  Y ++G L  ++            + F          L
Sbjct: 90  HPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGF---------GL 140
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------- 478
            VA G++++   A    VHRD+   N  LD +F  K+A+F LA                 
Sbjct: 141 QVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGA 197
Query: 479 ----------APATNDVMPKFDVFAFGVVLLELLS 503
                     +  T     K DV++FGV+L EL++
Sbjct: 198 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 232

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 45/215 (20%)
Query: 321 IVYEIEVIMESTMNLSEHYSI----GKSVYRATID-GKVLAVKKIKEDVTEELRILQRIN 375
           IV+  EVI         H ++    GK ++ A     ++  + ++ + +TE + I++  +
Sbjct: 29  IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI-IMKDFS 87
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N++ L+G+   S+G+  +V  Y ++G L  ++            + F          L
Sbjct: 88  HPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGF---------GL 138
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------- 478
            VA G++++   A    VHRD+   N  LD +F  K+A+F LA                 
Sbjct: 139 QVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGA 195
Query: 479 ----------APATNDVMPKFDVFAFGVVLLELLS 503
                     +  T     K DV++FGV+L EL++
Sbjct: 196 KLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 230

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 39/177 (22%)
Query: 353 KVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPX 412
           KV   +K + D   E  I+ + +H N+++L GV + S+    +V EY ENGSLD +L   
Sbjct: 70  KVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSK-PVMIVTEYMENGSLDSFLRKH 128
Query: 413 XXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI 472
                        T  Q + +   +A+G++Y+ +      VHRD+   NI ++S    K+
Sbjct: 129 DAQ---------FTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKV 176
Query: 473 ANFSLAAPATND----------------------VMPKF----DVFAFGVVLLELLS 503
           ++F L+    +D                         KF    DV+++G+VL E++S
Sbjct: 177 SDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 233

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 39/177 (22%)
Query: 353 KVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPX 412
           KV   +K + D   E  I+ + +H N+++L GV + S+    +V EY ENGSLD +L   
Sbjct: 82  KVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSK-PVMIVTEYMENGSLDSFLRKH 140
Query: 413 XXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI 472
                        T  Q + +   +A+G++Y+ +      VHRD+   NI ++S    K+
Sbjct: 141 DAQ---------FTVIQLVGMLRGIASGMKYLSDMG---FVHRDLAARNILINSNLVCKV 188
Query: 473 ANFSLAAPATND----------------------VMPKF----DVFAFGVVLLELLS 503
           ++F L+    +D                         KF    DV+++G+VL E++S
Sbjct: 189 SDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 39/177 (22%)
Query: 353 KVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPX 412
           KV   +K + D   E  I+ + +H N+++L GV + S+    +V EY ENGSLD +L   
Sbjct: 53  KVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSK-PVMIVTEYMENGSLDSFLRKH 111
Query: 413 XXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI 472
                        T  Q + +   +A+G++Y+ +      VHRD+   NI ++S    K+
Sbjct: 112 DAQ---------FTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKV 159
Query: 473 ANFSLAAPATND----------------------VMPKF----DVFAFGVVLLELLS 503
           ++F L+    +D                         KF    DV+++G+VL E++S
Sbjct: 160 SDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 216

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 39/177 (22%)
Query: 353 KVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPX 412
           KV   +K + D   E  I+ + +H N+++L GV + S+    +V EY ENGSLD +L   
Sbjct: 82  KVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSK-PVMIVTEYMENGSLDSFLRKH 140
Query: 413 XXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI 472
                        T  Q + +   +A+G++Y+ +      VHRD+   NI ++S    K+
Sbjct: 141 DAQ---------FTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKV 188
Query: 473 ANFSLAAPATND----------------------VMPKF----DVFAFGVVLLELLS 503
           ++F L+    +D                         KF    DV+++G+VL E++S
Sbjct: 189 SDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 39/177 (22%)
Query: 353 KVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPX 412
           KV   +K + D   E  I+ + +H N+++L GV + S+    +V EY ENGSLD +L   
Sbjct: 82  KVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSK-PVMIVTEYMENGSLDSFLRKH 140
Query: 413 XXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI 472
                        T  Q + +   +A+G++Y+ +      VHRD+   NI ++S    K+
Sbjct: 141 DAQ---------FTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKV 188
Query: 473 ANFSLAAPATND----------------------VMPKF----DVFAFGVVLLELLS 503
           ++F L+    +D                         KF    DV+++G+VL E++S
Sbjct: 189 SDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 39/177 (22%)
Query: 353 KVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPX 412
           KV   +K + D   E  I+ + +H N+++L GV + S+    +V EY ENGSLD +L   
Sbjct: 82  KVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSK-PVMIVTEYMENGSLDSFLRKH 140
Query: 413 XXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI 472
                        T  Q + +   +A+G++Y+ +      VHRD+   NI ++S    K+
Sbjct: 141 DAQ---------FTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKV 188
Query: 473 ANFSLAAPATND----------------------VMPKF----DVFAFGVVLLELLS 503
           ++F L     +D                         KF    DV+++G+VL E++S
Sbjct: 189 SDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 39/177 (22%)
Query: 353 KVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPX 412
           KV   +K + D   E  I+ + +H N+++L GV + S+    +V EY ENGSLD +L   
Sbjct: 80  KVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSK-PVMIVTEYMENGSLDSFLRKH 138
Query: 413 XXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI 472
                        T  Q + +   +A+G++Y+ +      VHRD+   NI ++S    K+
Sbjct: 139 DAQ---------FTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKV 186
Query: 473 ANFSLAAPATND----------------------VMPKF----DVFAFGVVLLELLS 503
           ++F L+    +D                         KF    DV+++G+VL E++S
Sbjct: 187 SDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 243

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 39/177 (22%)
Query: 353 KVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPX 412
           KV   +K + D   E  I+ + +H N+++L GV + S+    +V EY ENGSLD +L   
Sbjct: 82  KVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSK-PVMIVTEYMENGSLDSFLRKH 140
Query: 413 XXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI 472
                        T  Q + +   +A+G++Y+ +      VHRD+   NI ++S    K+
Sbjct: 141 DAQ---------FTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKV 188
Query: 473 ANFSLAAPATND----------------------VMPKF----DVFAFGVVLLELLS 503
           ++F L+    +D                         KF    DV+++G+VL E++S
Sbjct: 189 SDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 81/177 (45%), Gaps = 39/177 (22%)
Query: 353 KVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPX 412
           KV   +K + D   E  I+ + +H N+++L GV + S+    +V EY ENGSLD +L   
Sbjct: 82  KVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSK-PVMIVTEYMENGSLDSFLRKH 140
Query: 413 XXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI 472
                        T  Q + +   +A+G++Y+ +      VHRD+   NI ++S    K+
Sbjct: 141 DAQ---------FTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKV 188
Query: 473 ANFSLAAPATND----------------------VMPKF----DVFAFGVVLLELLS 503
           ++F L+    +D                         KF    DV+++G+VL E++S
Sbjct: 189 SDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 109/288 (37%), Gaps = 68/288 (23%)
Query: 344 SVYRATIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRF 394
           +VY+    G V AVK +          +    E+ +L++  H N++  MG S+  Q    
Sbjct: 28  TVYKGKWHGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQ--LA 84
Query: 395 LVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
           +V ++ E  SL   LH           +          +A   A G+ Y+H     SI+H
Sbjct: 85  IVTQWCEGSSLYHHLHIIETKFEMIKLI---------DIARQTAQGMDYLHA---KSIIH 132
Query: 455 RDIRTNNIQLDSRFKAKIANFSLA----------------------APAT---NDVMP-- 487
           RD+++NNI L      KI +F LA                      AP      D  P  
Sbjct: 133 RDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYS 192
Query: 488 -KFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIXXXXXXXXXXXXXXXNWMDPNLE 546
            + DV+AFG+VL EL++G+       N    +                     ++ P+L 
Sbjct: 193 FQSDVYAFGIVLYELMTGQLPYSNINNRDQIIF---------------MVGRGYLSPDLS 237
Query: 547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTETLER 594
                +   ++  L   C   K   RP   +++ ++ +L +S   + R
Sbjct: 238 KVRS-NCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSLPKIHR 284

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 83/199 (41%), Gaps = 52/199 (26%)
Query: 344 SVYRATIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRF 394
           +VY+    G V AVK +          +    E+ +L++  H N++  MG S+  Q    
Sbjct: 23  TVYKGKWHGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQ--LA 79
Query: 395 LVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
           +V ++ E  SL   LH           +          +A   A G+ Y+H     SI+H
Sbjct: 80  IVTQWCEGSSLYHHLHIIETKFEMIKLI---------DIARQTAQGMDYLHAK---SIIH 127
Query: 455 RDIRTNNIQLDSRFKAKIANFSLA----------------------APAT---NDVMP-- 487
           RD+++NNI L      KI +F LA                      AP      D  P  
Sbjct: 128 RDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYS 187
Query: 488 -KFDVFAFGVVLLELLSGK 505
            + DV+AFG+VL EL++G+
Sbjct: 188 FQSDVYAFGIVLYELMTGQ 206

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 83/199 (41%), Gaps = 52/199 (26%)
Query: 344 SVYRATIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRF 394
           +VY+    G V AVK +          +    E+ +L++  H N++  MG S+  Q    
Sbjct: 23  TVYKGKWHGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQ--LA 79
Query: 395 LVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
           +V ++ E  SL   LH           +          +A   A G+ Y+H     SI+H
Sbjct: 80  IVTQWCEGSSLYHHLHIIETKFEMIKLI---------DIARQTAQGMDYLHAK---SIIH 127
Query: 455 RDIRTNNIQLDSRFKAKIANFSLA----------------------APAT---NDVMP-- 487
           RD+++NNI L      KI +F LA                      AP      D  P  
Sbjct: 128 RDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYS 187
Query: 488 -KFDVFAFGVVLLELLSGK 505
            + DV+AFG+VL EL++G+
Sbjct: 188 FQSDVYAFGIVLYELMTGQ 206

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 42/167 (25%)
Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLT 426
           E+ +L++  H N++  MG S+  Q    +V ++ E  SL   LH                
Sbjct: 70  EVGVLRKTRHVNILLFMGYSTKPQ--LAIVTQWCEGSSLYHHLHASETK---------FE 118
Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA-------- 478
             + + +A   A G+ Y+H     SI+HRD+++NNI L      KI +F LA        
Sbjct: 119 MKKLIDIARQTARGMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSG 175
Query: 479 --------------APAT---NDVMP---KFDVFAFGVVLLELLSGK 505
                         AP      D  P   + DV+AFG+VL EL++G+
Sbjct: 176 SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQ 222

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 83/199 (41%), Gaps = 52/199 (26%)
Query: 344 SVYRATIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRF 394
           +VY+    G V AVK +          +    E+ +L++  H N++  MG S+  Q    
Sbjct: 28  TVYKGKWHGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQ--LA 84
Query: 395 LVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
           +V ++ E  SL   LH           +          +A   A G+ Y+H     SI+H
Sbjct: 85  IVTQWCEGSSLYHHLHIIETKFEMIKLI---------DIARQTAQGMDYLHAK---SIIH 132
Query: 455 RDIRTNNIQLDSRFKAKIANFSLA----------------------APAT---NDVMP-- 487
           RD+++NNI L      KI +F LA                      AP      D  P  
Sbjct: 133 RDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYS 192
Query: 488 -KFDVFAFGVVLLELLSGK 505
            + DV+AFG+VL EL++G+
Sbjct: 193 FQSDVYAFGIVLYELMTGQ 211

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 101/239 (42%), Gaps = 59/239 (24%)
Query: 306 QNKLLPGVSGYLGKPIVYEIEV--IMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIK-- 361
           +NK+ P   G       +EIE   +M ST   S  +    +VY+    G V AVK +K  
Sbjct: 16  KNKIRP--RGQRDSSYYWEIEASEVMLSTRIGSGSFG---TVYKGKWHGDV-AVKILKVV 69
Query: 362 -------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXX 414
                  +    E+ +L++  H N++  MG  +  + N  +V ++ E  SL K LH    
Sbjct: 70  DPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT--KDNLAIVTQWCEGSSLYKHLHVQET 127
Query: 415 XXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIAN 474
                         Q + +A   A G+ Y+H     +I+HRD+++NNI L      KI +
Sbjct: 128 KFQMF---------QLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGD 175
Query: 475 FSLA----------------------APAT------NDVMPKFDVFAFGVVLLELLSGK 505
           F LA                      AP        N    + DV+++G+VL EL++G+
Sbjct: 176 FGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGE 234

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 98/256 (38%), Gaps = 58/256 (22%)
Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLT 426
           E+ +L++  H N++  MG S+  Q    +V ++ E  SL   LH           +    
Sbjct: 82  EVGVLRKTRHVNILLFMGYSTKPQ--LAIVTQWCEGSSLYHHLHIIETKFEMIKLI---- 135
Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA-------- 478
                 +A   A G+ Y+H     SI+HRD+++NNI L      KI +F LA        
Sbjct: 136 -----DIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSG 187
Query: 479 --------------APAT---NDVMP---KFDVFAFGVVLLELLSGKKATRTTENGKTAV 518
                         AP      D  P   + DV+AFG+VL EL++G+       N    +
Sbjct: 188 SHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQII 247
Query: 519 LWKEIXXXXXXXXXXXXXXXNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEV 578
                                ++ P+L      +   ++  L   C   K   RP   ++
Sbjct: 248 F---------------MVGRGYLSPDLSKVRS-NCPKAMKRLMAECLKKKRDERPLFPQI 291
Query: 579 VFNLSVLTQSTETLER 594
           + ++ +L +S   + R
Sbjct: 292 LASIELLARSLPKIHR 307

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 98/256 (38%), Gaps = 58/256 (22%)
Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLT 426
           E+ +L++  H N++  MG S+  Q    +V ++ E  SL   LH           +    
Sbjct: 82  EVGVLRKTRHVNILLFMGYSTKPQ--LAIVTQWCEGSSLYHHLHIIETKFEMIKLI---- 135
Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA-------- 478
                 +A   A G+ Y+H     SI+HRD+++NNI L      KI +F LA        
Sbjct: 136 -----DIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSG 187
Query: 479 --------------APAT---NDVMP---KFDVFAFGVVLLELLSGKKATRTTENGKTAV 518
                         AP      D  P   + DV+AFG+VL EL++G+       N    +
Sbjct: 188 SHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQII 247
Query: 519 LWKEIXXXXXXXXXXXXXXXNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEV 578
                                ++ P+L      +   ++  L   C   K   RP   ++
Sbjct: 248 F---------------MVGRGYLSPDLSKVRS-NCPKAMKRLMAECLKKKRDERPLFPQI 291
Query: 579 VFNLSVLTQSTETLER 594
           + ++ +L +S   + R
Sbjct: 292 LASIELLARSLPKIHR 307

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 42/167 (25%)
Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLT 426
           E+ +L++  H N++  MG S+  Q    +V ++ E  SL   LH                
Sbjct: 58  EVGVLRKTRHVNILLFMGYSTKPQ--LAIVTQWCEGSSLYHHLHASETK---------FE 106
Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA-------- 478
             + + +A   A G+ Y+H     SI+HRD+++NNI L      KI +F LA        
Sbjct: 107 MKKLIDIARQTARGMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSG 163
Query: 479 --------------APAT---NDVMP---KFDVFAFGVVLLELLSGK 505
                         AP      D  P   + DV+AFG+VL EL++G+
Sbjct: 164 SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQ 210

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 98/256 (38%), Gaps = 58/256 (22%)
Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLT 426
           E+ +L++  H N++  MG S+  Q    +V ++ E  SL   LH           +    
Sbjct: 81  EVGVLRKTRHVNILLFMGYSTKPQ--LAIVTQWCEGSSLYHHLHIIETKFEMIKLI---- 134
Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA-------- 478
                 +A   A G+ Y+H     SI+HRD+++NNI L      KI +F LA        
Sbjct: 135 -----DIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSG 186
Query: 479 --------------APAT---NDVMP---KFDVFAFGVVLLELLSGKKATRTTENGKTAV 518
                         AP      D  P   + DV+AFG+VL EL++G+       N    +
Sbjct: 187 SHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQII 246
Query: 519 LWKEIXXXXXXXXXXXXXXXNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEV 578
                                ++ P+L      +   ++  L   C   K   RP   ++
Sbjct: 247 F---------------MVGRGYLSPDLSKVRS-NCPKAMKRLMAECLKKKRDERPLFPQI 290
Query: 579 VFNLSVLTQSTETLER 594
           + ++ +L +S   + R
Sbjct: 291 LASIELLARSLPKIHR 306

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 83/199 (41%), Gaps = 52/199 (26%)
Query: 344 SVYRATIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRF 394
           +VY+    G V AVK +          +    E+ +L++  H N++  MG S+  Q    
Sbjct: 23  TVYKGKWHGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQ--LA 79
Query: 395 LVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
           +V ++ E  SL   LH           +          +A   A G+ Y+H     SI+H
Sbjct: 80  IVTQWCEGSSLYHHLHIIETKFEMIKLI---------DIARQTAQGMDYLHAK---SIIH 127
Query: 455 RDIRTNNIQLDSRFKAKIANFSLA----------------------APAT---NDVMP-- 487
           RD+++NNI L      KI +F LA                      AP      D  P  
Sbjct: 128 RDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYS 187
Query: 488 -KFDVFAFGVVLLELLSGK 505
            + DV+AFG+VL EL++G+
Sbjct: 188 FQSDVYAFGIVLYELMTGQ 206

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 42/167 (25%)
Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLT 426
           E+ +L++  H N++  MG S+  Q    +V ++ E  SL   LH                
Sbjct: 70  EVGVLRKTRHVNILLFMGYSTAPQ--LAIVTQWCEGSSLYHHLHASETK---------FE 118
Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA-------- 478
             + + +A   A G+ Y+H     SI+HRD+++NNI L      KI +F LA        
Sbjct: 119 MKKLIDIARQTARGMDYLHA---KSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSG 175
Query: 479 --------------APAT---NDVMP---KFDVFAFGVVLLELLSGK 505
                         AP      D  P   + DV+AFG+VL EL++G+
Sbjct: 176 SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQ 222

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 15/173 (8%)
Query: 333 MNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGN 392
           + L+ H + G+ V    I+ KVLA   ++  +  E+  L+ + H +++KL  V   S+  
Sbjct: 29  VKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIK-SKDE 87
Query: 393 RFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSI 452
             +V EYA N   D  +               ++  +  R    + + ++Y H H    I
Sbjct: 88  IIMVIEYAGNELFDYIVQRDK-----------MSEQEARRFFQQIISAVEYCHRH---KI 133
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELLSGK 505
           VHRD++  N+ LD     KIA+F L+   T+    K    +      E++SGK
Sbjct: 134 VHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGK 186

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 15/173 (8%)
Query: 333 MNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGN 392
           + L+ H + G+ V    I+ KVLA   ++  +  E+  L+ + H +++KL  V   S+  
Sbjct: 24  VKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIK-SKDE 82
Query: 393 RFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSI 452
             +V EYA N   D  +               ++  +  R    + + ++Y H H    I
Sbjct: 83  IIMVIEYAGNELFDYIVQRDK-----------MSEQEARRFFQQIISAVEYCHRH---KI 128
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELLSGK 505
           VHRD++  N+ LD     KIA+F L+   T+    K    +      E++SGK
Sbjct: 129 VHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGK 181

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 15/173 (8%)
Query: 333 MNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGN 392
           + L+ H + G+ V    I+ KVLA   ++  +  E+  L+ + H +++KL  V   S+  
Sbjct: 30  VKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIK-SKDE 88
Query: 393 RFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSI 452
             +V EYA N   D  +               ++  +  R    + + ++Y H H    I
Sbjct: 89  IIMVIEYAGNELFDYIVQRDK-----------MSEQEARRFFQQIISAVEYCHRH---KI 134
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELLSGK 505
           VHRD++  N+ LD     KIA+F L+   T+    K    +      E++SGK
Sbjct: 135 VHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGK 187

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 15/173 (8%)
Query: 333 MNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGN 392
           + L+ H + G+ V    I+ KVLA   ++  +  E+  L+ + H +++KL  V   S+  
Sbjct: 20  VKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIK-SKDE 78
Query: 393 RFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSI 452
             +V EYA N   D  +               ++  +  R    + + ++Y H H    I
Sbjct: 79  IIMVIEYAGNELFDYIVQRDK-----------MSEQEARRFFQQIISAVEYCHRH---KI 124
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELLSGK 505
           VHRD++  N+ LD     KIA+F L+   T+    K    +      E++SGK
Sbjct: 125 VHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGK 177

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 40/192 (20%)
Query: 351 DGKVLAVKKIKE-------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENG 403
           D  ++AVK +K+       D   E  +L  + H ++VK  GV  +      +V+EY ++G
Sbjct: 42  DKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGD-PLIMVFEYMKHG 100
Query: 404 SLDKWLH---PXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTN 460
            L+K+L    P             LT SQ L +A  +A G+ Y+   A    VHRD+ T 
Sbjct: 101 DLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYL---ASQHFVHRDLATR 157
Query: 461 NIQLDSRFKAKIANFSLA---------------------APATNDVMPKF----DVFAFG 495
           N  +      KI +F ++                      P  + +  KF    DV++ G
Sbjct: 158 NCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLG 217
Query: 496 VVLLELLS-GKK 506
           VVL E+ + GK+
Sbjct: 218 VVLWEIFTYGKQ 229

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 46/218 (21%)
Query: 319 KPIVYEIEVIMESTMNLSEHYSIGKS--VYRATIDGKV-LAVKKIKED------VTEELR 369
           KP   +   +   T+ L E    G++  V+    +G   +AVK +K+          E  
Sbjct: 1   KPWWEDAWEVPRETLKLVERLGAGQAGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEAN 60
Query: 370 ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQ 429
           +++++ H  LV+L  V +  Q   +++ EY ENGSL  +L             I LT ++
Sbjct: 61  LMKQLQHQRLVRLYAVVT--QEPIYIITEYMENGSLVDFLKTPSG--------IKLTINK 110
Query: 430 RLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA-----APATND 484
            L +A  +A G+ ++ E    + +HRD+R  NI +      KIA+F LA     A  T  
Sbjct: 111 LLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDAEXTAR 167
Query: 485 VMPKF-------------------DVFAFGVVLLELLS 503
              KF                   DV++FG++L E+++
Sbjct: 168 EGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 46/186 (24%)
Query: 352 GKVLAVKKIKEDVTEELR-------ILQRINHANLVKLMGVS-SDSQGNRFLVYEYAENG 403
           G+V+AVKK++    E LR       IL+ + H N+VK  GV  S  + N  L+ EY   G
Sbjct: 70  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 129
Query: 404 SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
           SL  +L               +   + L+    +  G++Y+        +HRD+ T NI 
Sbjct: 130 SLRDYLQKHKER---------IDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNIL 177
Query: 464 LDSRFKAKIANFSLAAPATND----------------------VMPKF----DVFAFGVV 497
           +++  + KI +F L      D                         KF    DV++FGVV
Sbjct: 178 VENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 237
Query: 498 LLELLS 503
           L EL +
Sbjct: 238 LYELFT 243

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 43/197 (21%)
Query: 349 TIDGKVLAVKKIKE-------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAE 401
           T D  ++AVK +K+       D   E  +L  + H ++VK  GV  D      +V+EY +
Sbjct: 42  TKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGD-PLIMVFEYMK 100
Query: 402 NGSLDKWLHPXXXXXXX------XXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHR 455
           +G L+K+L                     L  SQ L +A  +A+G+ Y+   A    VHR
Sbjct: 101 HGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYL---ASQHFVHR 157
Query: 456 DIRTNNIQLDSRFKAKIANFSLA---------------------APATNDVMPKF----D 490
           D+ T N  + +    KI +F ++                      P  + +  KF    D
Sbjct: 158 DLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESD 217
Query: 491 VFAFGVVLLELLS-GKK 506
           V++FGV+L E+ + GK+
Sbjct: 218 VWSFGVILWEIFTYGKQ 234

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 46/186 (24%)
Query: 352 GKVLAVKKIKEDVTEELR-------ILQRINHANLVKLMGVS-SDSQGNRFLVYEYAENG 403
           G+V+AVKK++    E LR       IL+ + H N+VK  GV  S  + N  L+ EY   G
Sbjct: 39  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 98
Query: 404 SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
           SL  +L               +   + L+    +  G++Y+        +HRD+ T NI 
Sbjct: 99  SLRDYLQKHKER---------IDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNIL 146
Query: 464 LDSRFKAKIANFSLAAPATND----------------------VMPKF----DVFAFGVV 497
           +++  + KI +F L      D                         KF    DV++FGVV
Sbjct: 147 VENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 206
Query: 498 LLELLS 503
           L EL +
Sbjct: 207 LYELFT 212

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 41/174 (23%)
Query: 355 LAVKKIKEDVTEELR--------ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           +A+K +K   TE+ R        I+ + +H N+++L GV S  +    ++ EY ENG+LD
Sbjct: 76  VAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYK-PMMIITEYMENGALD 134
Query: 407 KWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS 466
           K+L            V  L           +A G++Y+   A  + VHRD+   NI ++S
Sbjct: 135 KFLREKDGEFSVLQLVGMLR---------GIAAGMKYL---ANMNYVHRDLAARNILVNS 182
Query: 467 RFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLW 520
               K+++F L+    +D                     +AT TT  GK  + W
Sbjct: 183 NLVCKVSDFGLSRVLEDD--------------------PEATYTTSGGKIPIRW 216

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 46/186 (24%)
Query: 352 GKVLAVKKIKEDVTEELR-------ILQRINHANLVKLMGVS-SDSQGNRFLVYEYAENG 403
           G+V+AVKK++    E LR       IL+ + H N+VK  GV  S  + N  L+ EY   G
Sbjct: 44  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 103
Query: 404 SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
           SL  +L               +   + L+    +  G++Y+        +HRD+ T NI 
Sbjct: 104 SLRDYLQKHKER---------IDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNIL 151
Query: 464 LDSRFKAKIANFSLAAPATND----------------------VMPKF----DVFAFGVV 497
           +++  + KI +F L      D                         KF    DV++FGVV
Sbjct: 152 VENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 211
Query: 498 LLELLS 503
           L EL +
Sbjct: 212 LYELFT 217

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 46/186 (24%)
Query: 352 GKVLAVKKIKEDVTEELR-------ILQRINHANLVKLMGVS-SDSQGNRFLVYEYAENG 403
           G+V+AVKK++    E LR       IL+ + H N+VK  GV  S  + N  L+ EY   G
Sbjct: 57  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 116
Query: 404 SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
           SL  +L               +   + L+    +  G++Y+        +HRD+ T NI 
Sbjct: 117 SLRDYLQKHKER---------IDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNIL 164
Query: 464 LDSRFKAKIANFSLAAPATND----------------------VMPKF----DVFAFGVV 497
           +++  + KI +F L      D                         KF    DV++FGVV
Sbjct: 165 VENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 224
Query: 498 LLELLS 503
           L EL +
Sbjct: 225 LYELFT 230

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 46/186 (24%)
Query: 352 GKVLAVKKIKEDVTEELR-------ILQRINHANLVKLMGVS-SDSQGNRFLVYEYAENG 403
           G+V+AVKK++    E LR       IL+ + H N+VK  GV  S  + N  L+ EY   G
Sbjct: 37  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 96
Query: 404 SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
           SL  +L               +   + L+    +  G++Y+        +HRD+ T NI 
Sbjct: 97  SLRDYLQKHKER---------IDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNIL 144
Query: 464 LDSRFKAKIANFSLAAPATND----------------------VMPKF----DVFAFGVV 497
           +++  + KI +F L      D                         KF    DV++FGVV
Sbjct: 145 VENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 204
Query: 498 LLELLS 503
           L EL +
Sbjct: 205 LYELFT 210

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 46/186 (24%)
Query: 352 GKVLAVKKIKEDVTEELR-------ILQRINHANLVKLMGVS-SDSQGNRFLVYEYAENG 403
           G+V+AVKK++    E LR       IL+ + H N+VK  GV  S  + N  L+ EY   G
Sbjct: 42  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 101
Query: 404 SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
           SL  +L               +   + L+    +  G++Y+        +HRD+ T NI 
Sbjct: 102 SLRDYLQKHKER---------IDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNIL 149
Query: 464 LDSRFKAKIANFSLAAPATND----------------------VMPKF----DVFAFGVV 497
           +++  + KI +F L      D                         KF    DV++FGVV
Sbjct: 150 VENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 209
Query: 498 LLELLS 503
           L EL +
Sbjct: 210 LYELFT 215

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 46/186 (24%)
Query: 352 GKVLAVKKIKEDVTEELR-------ILQRINHANLVKLMGVS-SDSQGNRFLVYEYAENG 403
           G+V+AVKK++    E LR       IL+ + H N+VK  GV  S  + N  L+ EY   G
Sbjct: 57  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 116
Query: 404 SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
           SL  +L               +   + L+    +  G++Y+        +HRD+ T NI 
Sbjct: 117 SLRDYLQKHKER---------IDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNIL 164
Query: 464 LDSRFKAKIANFSLAAPATND----------------------VMPKF----DVFAFGVV 497
           +++  + KI +F L      D                         KF    DV++FGVV
Sbjct: 165 VENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 224
Query: 498 LLELLS 503
           L EL +
Sbjct: 225 LYELFT 230

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 46/186 (24%)
Query: 352 GKVLAVKKIKEDVTEELR-------ILQRINHANLVKLMGVS-SDSQGNRFLVYEYAENG 403
           G+V+AVKK++    E LR       IL+ + H N+VK  GV  S  + N  L+ EY   G
Sbjct: 39  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 98
Query: 404 SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
           SL  +L               +   + L+    +  G++Y+        +HRD+ T NI 
Sbjct: 99  SLRDYLQKHKER---------IDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNIL 146
Query: 464 LDSRFKAKIANFSLAAPATND----------------------VMPKF----DVFAFGVV 497
           +++  + KI +F L      D                         KF    DV++FGVV
Sbjct: 147 VENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 206
Query: 498 LLELLS 503
           L EL +
Sbjct: 207 LYELFT 212

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 43/182 (23%)
Query: 355 LAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW 408
           +A+K I+E      D  EE  ++ +++H  LV+L GV  + Q    LV+E+ E+G L  +
Sbjct: 34  VAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE-QAPICLVFEFMEHGCLSDY 92
Query: 409 LHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF 468
           L                     L + LDV  G+ Y+ E    S++HRD+   N  +    
Sbjct: 93  LRTQRGLFAAETL---------LGMCLDVCEGMAYLEE---ASVIHRDLAARNCLVGENQ 140
Query: 469 KAKIANFSLA--------APATNDVMP----------------KFDVFAFGVVLLELLSG 504
             K+++F +           +T    P                K DV++FGV++ E+ S 
Sbjct: 141 VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSE 200
Query: 505 KK 506
            K
Sbjct: 201 GK 202

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 46/186 (24%)
Query: 352 GKVLAVKKIKEDVTEELR-------ILQRINHANLVKLMGVS-SDSQGNRFLVYEYAENG 403
           G+V+AVKK++    E LR       IL+ + H N+VK  GV  S  + N  L+ EY   G
Sbjct: 39  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 98
Query: 404 SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
           SL  +L               +   + L+    +  G++Y+        +HRD+ T NI 
Sbjct: 99  SLRDYLQKHKER---------IDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNIL 146
Query: 464 LDSRFKAKIANFSLAAPATND----------------------VMPKF----DVFAFGVV 497
           +++  + KI +F L      D                         KF    DV++FGVV
Sbjct: 147 VENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 206
Query: 498 LLELLS 503
           L EL +
Sbjct: 207 LYELFT 212

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 46/186 (24%)
Query: 352 GKVLAVKKIKEDVTEELR-------ILQRINHANLVKLMGVS-SDSQGNRFLVYEYAENG 403
           G+V+AVKK++    E LR       IL+ + H N+VK  GV  S  + N  L+ EY   G
Sbjct: 45  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 104
Query: 404 SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
           SL  +L               +   + L+    +  G++Y+        +HRD+ T NI 
Sbjct: 105 SLRDYLQKHKER---------IDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNIL 152
Query: 464 LDSRFKAKIANFSLAAPATND----------------------VMPKF----DVFAFGVV 497
           +++  + KI +F L      D                         KF    DV++FGVV
Sbjct: 153 VENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 212
Query: 498 LLELLS 503
           L EL +
Sbjct: 213 LYELFT 218

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 46/186 (24%)
Query: 352 GKVLAVKKIKEDVTEELR-------ILQRINHANLVKLMGVS-SDSQGNRFLVYEYAENG 403
           G+V+AVKK++    E LR       IL+ + H N+VK  GV  S  + N  L+ EY   G
Sbjct: 38  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 97
Query: 404 SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
           SL  +L               +   + L+    +  G++Y+        +HRD+ T NI 
Sbjct: 98  SLRDYLQKHKER---------IDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNIL 145
Query: 464 LDSRFKAKIANFSLAAPATND----------------------VMPKF----DVFAFGVV 497
           +++  + KI +F L      D                         KF    DV++FGVV
Sbjct: 146 VENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 205
Query: 498 LLELLS 503
           L EL +
Sbjct: 206 LYELFT 211

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 46/186 (24%)
Query: 352 GKVLAVKKIKEDVTEELR-------ILQRINHANLVKLMGVS-SDSQGNRFLVYEYAENG 403
           G+V+AVKK++    E LR       IL+ + H N+VK  GV  S  + N  L+ EY   G
Sbjct: 46  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 105
Query: 404 SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
           SL  +L               +   + L+    +  G++Y+        +HRD+ T NI 
Sbjct: 106 SLRDYLQKHKER---------IDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNIL 153
Query: 464 LDSRFKAKIANFSLAAPATND----------------------VMPKF----DVFAFGVV 497
           +++  + KI +F L      D                         KF    DV++FGVV
Sbjct: 154 VENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 213
Query: 498 LLELLS 503
           L EL +
Sbjct: 214 LYELFT 219

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 46/186 (24%)
Query: 352 GKVLAVKKIKEDVTEELR-------ILQRINHANLVKLMGVS-SDSQGNRFLVYEYAENG 403
           G+V+AVKK++    E LR       IL+ + H N+VK  GV  S  + N  L+ EY   G
Sbjct: 42  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 101
Query: 404 SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
           SL  +L               +   + L+    +  G++Y+        +HRD+ T NI 
Sbjct: 102 SLRDYLQAHAER---------IDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNIL 149
Query: 464 LDSRFKAKIANFSLAAPATND----------------------VMPKF----DVFAFGVV 497
           +++  + KI +F L      D                         KF    DV++FGVV
Sbjct: 150 VENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 209
Query: 498 LLELLS 503
           L EL +
Sbjct: 210 LYELFT 215

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 46/186 (24%)
Query: 352 GKVLAVKKIKEDVTEELR-------ILQRINHANLVKLMGVS-SDSQGNRFLVYEYAENG 403
           G+V+AVKK++    E LR       IL+ + H N+VK  GV  S  + N  L+ EY   G
Sbjct: 43  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 102
Query: 404 SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
           SL  +L               +   + L+    +  G++Y+        +HRD+ T NI 
Sbjct: 103 SLRDYLQKHKER---------IDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNIL 150
Query: 464 LDSRFKAKIANFSLAAPATND----------------------VMPKF----DVFAFGVV 497
           +++  + KI +F L      D                         KF    DV++FGVV
Sbjct: 151 VENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 210
Query: 498 LLELLS 503
           L EL +
Sbjct: 211 LYELFT 216

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 43/179 (24%)
Query: 355 LAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW 408
           +AVK IKE      +  +E + + +++H  LVK  GV S  +   ++V EY  NG L  +
Sbjct: 35  VAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCS-KEYPIYIVTEYISNGCLLNY 93
Query: 409 LHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF 468
           L               L  SQ L +  DV  G+ ++  H     +HRD+   N  +D   
Sbjct: 94  LRSHGKG---------LEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDL 141
Query: 469 KAKIANFSLAAPATND-----VMPKF-------------------DVFAFGVVLLELLS 503
             K+++F +     +D     V  KF                   DV+AFG+++ E+ S
Sbjct: 142 CVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFS 200

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 47/213 (22%)
Query: 324 EIEVIMESTMNLSEHYSIGK--SVYRATIDGKV-LAVKKIKED------VTEELRILQRI 374
           E EV  E T+ L E    G+   V+    +G   +AVK +K+          E  +++++
Sbjct: 15  EWEVPRE-TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQL 73
Query: 375 NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVA 434
            H  LV+L  V +  Q   +++ EY ENGSL  +L             I LT ++ L +A
Sbjct: 74  QHQRLVRLYAVVT--QEPIYIITEYMENGSLVDFLK--------TPSGIKLTINKLLDMA 123
Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------------- 478
             +A G+ ++ E    + +HRD+R  NI +      KIA+F LA                
Sbjct: 124 AQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKF 180
Query: 479 -----APAT---NDVMPKFDVFAFGVVLLELLS 503
                AP          K DV++FG++L E+++
Sbjct: 181 PIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 213

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 39/177 (22%)
Query: 353 KVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPX 412
           KV   +K + D   E  I+ + +H N+++L GV + S+    +V E  ENGSLD +L   
Sbjct: 53  KVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSK-PVMIVTEXMENGSLDSFLRKH 111
Query: 413 XXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI 472
                        T  Q + +   +A+G++Y+ +      VHRD+   NI ++S    K+
Sbjct: 112 DAQ---------FTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKV 159
Query: 473 ANFSLAAPATND----------------------VMPKF----DVFAFGVVLLELLS 503
           ++F L+    +D                         KF    DV+++G+VL E++S
Sbjct: 160 SDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 216

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 47/213 (22%)
Query: 324 EIEVIMESTMNLSEHYSIGK--SVYRATIDGKV-LAVKKIKED------VTEELRILQRI 374
           E EV  E T+ L E    G+   V+    +G   +AVK +K+          E  +++++
Sbjct: 16  EWEVPRE-TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQL 74
Query: 375 NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVA 434
            H  LV+L  V +  Q   +++ EY ENGSL  +L             I LT ++ L +A
Sbjct: 75  QHQRLVRLYAVVT--QEPIYIITEYMENGSLVDFLK--------TPSGIKLTINKLLDMA 124
Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------------- 478
             +A G+ ++ E    + +HRD+R  NI +      KIA+F LA                
Sbjct: 125 AQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKF 181
Query: 479 -----APAT---NDVMPKFDVFAFGVVLLELLS 503
                AP          K DV++FG++L E+++
Sbjct: 182 PIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 214

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 47/213 (22%)
Query: 324 EIEVIMESTMNLSEHYSIGK--SVYRATIDGKV-LAVKKIKED------VTEELRILQRI 374
           E EV  E T+ L E    G+   V+    +G   +AVK +K+          E  +++++
Sbjct: 13  EWEVPRE-TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQL 71
Query: 375 NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVA 434
            H  LV+L  V +  Q   +++ EY ENGSL  +L             I LT ++ L +A
Sbjct: 72  QHQRLVRLYAVVT--QEPIYIITEYMENGSLVDFLK--------TPSGIKLTINKLLDMA 121
Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------------- 478
             +A G+ ++ E    + +HRD+R  NI +      KIA+F LA                
Sbjct: 122 AQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKF 178
Query: 479 -----APAT---NDVMPKFDVFAFGVVLLELLS 503
                AP          K DV++FG++L E+++
Sbjct: 179 PIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 211

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 39/177 (22%)
Query: 353 KVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPX 412
           KV   +K + D   E  I+ + +H N+++L GV + S+    +V E  ENGSLD +L   
Sbjct: 82  KVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSK-PVMIVTEXMENGSLDSFLRKH 140
Query: 413 XXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI 472
                        T  Q + +   +A+G++Y+ +      VHRD+   NI ++S    K+
Sbjct: 141 DAQ---------FTVIQLVGMLRGIASGMKYLSDMGA---VHRDLAARNILINSNLVCKV 188
Query: 473 ANFSLAAPATND----------------------VMPKF----DVFAFGVVLLELLS 503
           ++F L+    +D                         KF    DV+++G+VL E++S
Sbjct: 189 SDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 47/213 (22%)
Query: 324 EIEVIMESTMNLSEHYSIGK--SVYRATIDGKV-LAVKKIKED------VTEELRILQRI 374
           E EV  E T+ L E    G+   V+    +G   +AVK +K+          E  +++++
Sbjct: 17  EWEVPRE-TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQL 75
Query: 375 NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVA 434
            H  LV+L  V +  Q   +++ EY ENGSL  +L             I LT ++ L +A
Sbjct: 76  QHQRLVRLYAVVT--QEPIYIITEYMENGSLVDFLK--------TPSGIKLTINKLLDMA 125
Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------------- 478
             +A G+ ++ E    + +HRD+R  NI +      KIA+F LA                
Sbjct: 126 AQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKF 182
Query: 479 -----APAT---NDVMPKFDVFAFGVVLLELLS 503
                AP          K DV++FG++L E+++
Sbjct: 183 PIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 215

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 43/182 (23%)
Query: 355 LAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW 408
           +A+K IKE      D  EE  ++ +++H  LV+L GV  + Q    LV+E+ E+G L  +
Sbjct: 54  VAIKTIKEGSMSEDDFIEEAEVMMKLSHPKLVQLYGVCLE-QAPICLVFEFMEHGCLSDY 112
Query: 409 LHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF 468
           L                     L + LDV  G+ Y+ E     ++HRD+   N  +    
Sbjct: 113 LRTQRGLFAAETL---------LGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQ 160
Query: 469 KAKIANFSLA--------APATNDVMP----------------KFDVFAFGVVLLELLSG 504
             K+++F +           +T    P                K DV++FGV++ E+ S 
Sbjct: 161 VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSE 220
Query: 505 KK 506
            K
Sbjct: 221 GK 222

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 39/177 (22%)
Query: 353 KVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPX 412
           KV   +K + D   E  I+ + +H N+++L GV + S+    +V E  ENGSLD +L   
Sbjct: 82  KVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSK-PVMIVTEXMENGSLDSFLRKH 140
Query: 413 XXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI 472
                        T  Q + +   +A+G++Y+ +      VHRD+   NI ++S    K+
Sbjct: 141 DAQ---------FTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKV 188
Query: 473 ANFSLAAPATND----------------------VMPKF----DVFAFGVVLLELLS 503
           ++F L+    +D                         KF    DV+++G+VL E++S
Sbjct: 189 SDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 47/213 (22%)
Query: 324 EIEVIMESTMNLSEHYSIGK--SVYRATIDGKV-LAVKKIKED------VTEELRILQRI 374
           E EV  E T+ L E    G+   V+    +G   +AVK +K+          E  +++++
Sbjct: 7   EWEVPRE-TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQL 65
Query: 375 NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVA 434
            H  LV+L  V +  Q   +++ EY ENGSL  +L             I LT ++ L +A
Sbjct: 66  QHQRLVRLYAVVT--QEPIYIITEYMENGSLVDFLK--------TPSGIKLTINKLLDMA 115
Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------------- 478
             +A G+ ++ E    + +HRD+R  NI +      KIA+F LA                
Sbjct: 116 AQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKF 172
Query: 479 -----APAT---NDVMPKFDVFAFGVVLLELLS 503
                AP          K DV++FG++L E+++
Sbjct: 173 PIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 47/213 (22%)
Query: 324 EIEVIMESTMNLSEHYSIGK--SVYRATIDGKV-LAVKKIKED------VTEELRILQRI 374
           E EV  E T+ L E    G+   V+    +G   +AVK +K+          E  +++++
Sbjct: 13  EWEVPRE-TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQL 71
Query: 375 NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVA 434
            H  LV+L  V +  Q   +++ EY ENGSL  +L             I LT ++ L +A
Sbjct: 72  QHQRLVRLYAVVT--QEPIYIITEYMENGSLVDFLKTPSG--------IKLTINKLLDMA 121
Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------------- 478
             +A G+ ++ E    + +HRD+R  NI +      KIA+F LA                
Sbjct: 122 AQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKF 178
Query: 479 -----APAT---NDVMPKFDVFAFGVVLLELLS 503
                AP          K DV++FG++L E+++
Sbjct: 179 PIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 211

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 47/213 (22%)
Query: 324 EIEVIMESTMNLSEHYSIGK--SVYRATIDGKV-LAVKKIKED------VTEELRILQRI 374
           E EV  E T+ L E    G+   V+    +G   +AVK +K+          E  +++++
Sbjct: 9   EWEVPRE-TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQL 67
Query: 375 NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVA 434
            H  LV+L  V +  Q   +++ EY ENGSL  +L             I LT ++ L +A
Sbjct: 68  QHQRLVRLYAVVT--QEPIYIITEYMENGSLVDFLKTPSG--------IKLTINKLLDMA 117
Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------------- 478
             +A G+ ++ E    + +HRD+R  NI +      KIA+F LA                
Sbjct: 118 AQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKF 174
Query: 479 -----APAT---NDVMPKFDVFAFGVVLLELLS 503
                AP          K DV++FG++L E+++
Sbjct: 175 PIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 207

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 47/213 (22%)
Query: 324 EIEVIMESTMNLSEHYSIGK--SVYRATIDGKV-LAVKKIKED------VTEELRILQRI 374
           E EV  E T+ L E    G+   V+    +G   +AVK +K+          E  +++++
Sbjct: 12  EWEVPRE-TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQL 70
Query: 375 NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVA 434
            H  LV+L  V +  Q   +++ EY ENGSL  +L             I LT ++ L +A
Sbjct: 71  QHQRLVRLYAVVT--QEPIYIITEYMENGSLVDFLKTPSG--------IKLTINKLLDMA 120
Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------------- 478
             +A G+ ++ E    + +HRD+R  NI +      KIA+F LA                
Sbjct: 121 AQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKF 177
Query: 479 -----APAT---NDVMPKFDVFAFGVVLLELLS 503
                AP          K DV++FG++L E+++
Sbjct: 178 PIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 210

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 47/213 (22%)
Query: 324 EIEVIMESTMNLSEHYSIGK--SVYRATIDGKV-LAVKKIKED------VTEELRILQRI 374
           E EV  E T+ L E    G+   V+    +G   +AVK +K+          E  +++++
Sbjct: 7   EWEVPRE-TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQL 65
Query: 375 NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVA 434
            H  LV+L  V +  Q   +++ EY ENGSL  +L             I LT ++ L +A
Sbjct: 66  QHQRLVRLYAVVT--QEPIYIITEYMENGSLVDFLKTPSG--------IKLTINKLLDMA 115
Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------------- 478
             +A G+ ++ E    + +HRD+R  NI +      KIA+F LA                
Sbjct: 116 AQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKF 172
Query: 479 -----APAT---NDVMPKFDVFAFGVVLLELLS 503
                AP          K DV++FG++L E+++
Sbjct: 173 PIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 45/199 (22%)
Query: 353 KVLAVKKIKE-----DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK 407
           K+L  +KI+       +  E++ L+   H +++KL  V S +  + F+V EY   G L  
Sbjct: 47  KILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVIS-TPSDIFMVMEYVSGGELFD 105
Query: 408 WLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR 467
           ++               L   +  R+   + +G+ Y H H    +VHRD++  N+ LD+ 
Sbjct: 106 YICKNGR----------LDEKESRRLFQQILSGVDYCHRHM---VVHRDLKPENVLLDAH 152
Query: 468 FKAKIANFSL-------------------AAPATND----VMPKFDVFAFGVVLLELLSG 504
             AKIA+F L                   AAP          P+ D+++ GV+L  LL G
Sbjct: 153 MNAKIADFGLSNMMSDGEFLRXSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCG 212
Query: 505 KKATRTTENGKTAVLWKEI 523
              T   ++     L+K+I
Sbjct: 213 ---TLPFDDDHVPTLFKKI 228

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 47/213 (22%)
Query: 324 EIEVIMESTMNLSEHYSIGK--SVYRATIDGKV-LAVKKIKED------VTEELRILQRI 374
           E EV  E T+ L E    G+   V+    +G   +AVK +K+          E  +++++
Sbjct: 2   EWEVPRE-TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQL 60
Query: 375 NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVA 434
            H  LV+L  V +  Q   +++ EY ENGSL  +L             I LT ++ L +A
Sbjct: 61  QHQRLVRLYAVVT--QEPIYIITEYMENGSLVDFLKTPSG--------IKLTINKLLDMA 110
Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------------- 478
             +A G+ ++ E    + +HRD+R  NI +      KIA+F LA                
Sbjct: 111 AQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKF 167
Query: 479 -----APAT---NDVMPKFDVFAFGVVLLELLS 503
                AP          K DV++FG++L E+++
Sbjct: 168 PIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 200

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 47/213 (22%)
Query: 324 EIEVIMESTMNLSEHYSIGK--SVYRATIDGKV-LAVKKIKED------VTEELRILQRI 374
           E EV  E T+ L E    G+   V+    +G   +AVK +K+          E  +++++
Sbjct: 7   EWEVPRE-TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQL 65
Query: 375 NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVA 434
            H  LV+L  V +  Q   +++ EY ENGSL  +L             I LT ++ L +A
Sbjct: 66  QHQRLVRLYAVVT--QEPIYIITEYMENGSLVDFLKTPSG--------IKLTINKLLDMA 115
Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------------- 478
             +A G+ ++ E    + +HRD+R  NI +      KIA+F LA                
Sbjct: 116 AQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKF 172
Query: 479 -----APAT---NDVMPKFDVFAFGVVLLELLS 503
                AP          K DV++FG++L E+++
Sbjct: 173 PIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 47/213 (22%)
Query: 324 EIEVIMESTMNLSEHYSIGK--SVYRATIDGKV-LAVKKIKED------VTEELRILQRI 374
           E EV  E T+ L E    G+   V+    +G   +AVK +K+          E  +++++
Sbjct: 8   EWEVPRE-TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQL 66
Query: 375 NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVA 434
            H  LV+L  V +  Q   +++ EY ENGSL  +L             I LT ++ L +A
Sbjct: 67  QHQRLVRLYAVVT--QEPIYIITEYMENGSLVDFLKTPSG--------IKLTINKLLDMA 116
Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------------- 478
             +A G+ ++ E    + +HRD+R  NI +      KIA+F LA                
Sbjct: 117 AQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKF 173
Query: 479 -----APAT---NDVMPKFDVFAFGVVLLELLS 503
                AP          K DV++FG++L E+++
Sbjct: 174 PIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 206

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 46/186 (24%)
Query: 352 GKVLAVKKIKEDVTEELR-------ILQRINHANLVKLMGVS-SDSQGNRFLVYEYAENG 403
           G+V+AVKK++    E LR       IL+ + H N+VK  GV  S  + N  L+ E+   G
Sbjct: 42  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEFLPYG 101
Query: 404 SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
           SL ++L               +   + L+    +  G++Y+        +HRD+ T NI 
Sbjct: 102 SLREYLQKHKER---------IDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNIL 149
Query: 464 LDSRFKAKIANFSLAAPATND----------------------VMPKF----DVFAFGVV 497
           +++  + KI +F L      D                         KF    DV++FGVV
Sbjct: 150 VENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 209
Query: 498 LLELLS 503
           L EL +
Sbjct: 210 LYELFT 215

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 97/225 (43%), Gaps = 54/225 (24%)
Query: 318 GKPIVYEIEVIMESTMNLSE-HYS-IGKSVYRATIDG--KVLAVKKIKEDV--------T 365
           G P V+  +  ++   +L E H+  +    Y  T DG  +++AVK +K D          
Sbjct: 23  GDPTVFH-KRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWK 81
Query: 366 EELRILQRINHANLVKLMGVSSDSQGNRF-LVYEYAENGSLDKWLHPXXXXXXXXXXVIF 424
           +E+ IL+ + H +++K  G   D+      LV EY   GSL  +L P             
Sbjct: 82  QEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYL-PRHS---------- 130
Query: 425 LTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSL--AAPAT 482
           +  +Q L  A  +  G+ Y+H  AQ   +HRD+   N+ LD+    KI +F L  A P  
Sbjct: 131 IGLAQLLLFAQQICEGMAYLH--AQ-HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEG 187
Query: 483 NDVM--------PKF----------------DVFAFGVVLLELLS 503
           ++          P F                DV++FGV L ELL+
Sbjct: 188 HEXYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLT 232

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 47/203 (23%)
Query: 346 YRATIDGKVLAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEY 399
           +R   D   +A+K IKE      +  EE +++  ++H  LV+L GV +  Q   F++ EY
Sbjct: 30  WRGQYD---VAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCT-KQRPIFIITEY 85
Query: 400 AENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
             NG L  +L              F T  Q L +  DV   ++Y+        +HRD+  
Sbjct: 86  MANGCLLNYLREMRHR--------FQT-QQLLEMCKDVCEAMEYLE---SKQFLHRDLAA 133
Query: 460 NNIQLDSRFKAKIANFSLAAPATND-----VMPKF-------------------DVFAFG 495
            N  ++ +   K+++F L+    +D     V  KF                   D++AFG
Sbjct: 134 RNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFG 193
Query: 496 VVLLELLS-GKKATRTTENGKTA 517
           V++ E+ S GK       N +TA
Sbjct: 194 VLMWEIYSLGKMPYERFTNSETA 216

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 47/203 (23%)
Query: 346 YRATIDGKVLAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEY 399
           +R   D   +A+K IKE      +  EE +++  ++H  LV+L GV +  Q   F++ EY
Sbjct: 45  WRGQYD---VAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCT-KQRPIFIITEY 100
Query: 400 AENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
             NG L  +L              F T  Q L +  DV   ++Y+        +HRD+  
Sbjct: 101 MANGCLLNYLREMRHR--------FQT-QQLLEMCKDVCEAMEYLE---SKQFLHRDLAA 148
Query: 460 NNIQLDSRFKAKIANFSLAAPATND-----VMPKF-------------------DVFAFG 495
            N  ++ +   K+++F L+    +D     V  KF                   D++AFG
Sbjct: 149 RNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFG 208
Query: 496 VVLLELLS-GKKATRTTENGKTA 517
           V++ E+ S GK       N +TA
Sbjct: 209 VLMWEIYSLGKMPYERFTNSETA 231

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 47/203 (23%)
Query: 346 YRATIDGKVLAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEY 399
           +R   D   +A+K IKE      +  EE +++  ++H  LV+L GV +  Q   F++ EY
Sbjct: 36  WRGQYD---VAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCT-KQRPIFIITEY 91
Query: 400 AENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
             NG L  +L              F T  Q L +  DV   ++Y+        +HRD+  
Sbjct: 92  MANGCLLNYLREMRHR--------FQT-QQLLEMCKDVCEAMEYLE---SKQFLHRDLAA 139
Query: 460 NNIQLDSRFKAKIANFSLAAPATND-----VMPKF-------------------DVFAFG 495
            N  ++ +   K+++F L+    +D     V  KF                   D++AFG
Sbjct: 140 RNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFG 199
Query: 496 VVLLELLS-GKKATRTTENGKTA 517
           V++ E+ S GK       N +TA
Sbjct: 200 VLMWEIYSLGKMPYERFTNSETA 222

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 43/182 (23%)
Query: 355 LAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW 408
           +A+K I+E      D  EE  ++ +++H  LV+L GV  + Q    LV+E+ E+G L  +
Sbjct: 34  VAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE-QAPICLVFEFMEHGCLSDY 92
Query: 409 LHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF 468
           L                     L + LDV  G+ Y+ E     ++HRD+   N  +    
Sbjct: 93  LRTQRGLFAAETL---------LGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQ 140
Query: 469 KAKIANFSLA--------APATNDVMP----------------KFDVFAFGVVLLELLSG 504
             K+++F +           +T    P                K DV++FGV++ E+ S 
Sbjct: 141 VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSE 200
Query: 505 KK 506
            K
Sbjct: 201 GK 202

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 47/203 (23%)
Query: 346 YRATIDGKVLAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEY 399
           +R   D   +A+K IKE      +  EE +++  ++H  LV+L GV +  Q   F++ EY
Sbjct: 29  WRGQYD---VAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCT-KQRPIFIITEY 84
Query: 400 AENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
             NG L  +L              F T  Q L +  DV   ++Y+        +HRD+  
Sbjct: 85  MANGCLLNYLREMRHR--------FQT-QQLLEMCKDVCEAMEYLE---SKQFLHRDLAA 132
Query: 460 NNIQLDSRFKAKIANFSLAAPATND-----VMPKF-------------------DVFAFG 495
            N  ++ +   K+++F L+    +D     V  KF                   D++AFG
Sbjct: 133 RNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFG 192
Query: 496 VVLLELLS-GKKATRTTENGKTA 517
           V++ E+ S GK       N +TA
Sbjct: 193 VLMWEIYSLGKMPYERFTNSETA 215

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 47/203 (23%)
Query: 346 YRATIDGKVLAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEY 399
           +R   D   +A+K IKE      +  EE +++  ++H  LV+L GV +  Q   F++ EY
Sbjct: 45  WRGQYD---VAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCT-KQRPIFIITEY 100
Query: 400 AENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
             NG L  +L              F T  Q L +  DV   ++Y+        +HRD+  
Sbjct: 101 MANGCLLNYLREMRHR--------FQT-QQLLEMCKDVCEAMEYLE---SKQFLHRDLAA 148
Query: 460 NNIQLDSRFKAKIANFSLAAPATND-----VMPKF-------------------DVFAFG 495
            N  ++ +   K+++F L+    +D     V  KF                   D++AFG
Sbjct: 149 RNCLVNDQGVVKVSDFGLSRYVLDDEETSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFG 208
Query: 496 VVLLELLS-GKKATRTTENGKTA 517
           V++ E+ S GK       N +TA
Sbjct: 209 VLMWEIYSLGKMPYERFTNSETA 231

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 44/194 (22%)
Query: 355 LAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW 408
           +A+K IKE      +  EE +++  ++H  LV+L GV +  Q   F++ EY  NG L  +
Sbjct: 31  VAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCT-KQRPIFIITEYMANGCLLNY 89
Query: 409 LHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF 468
           L              F T  Q L +  DV   ++Y+        +HRD+   N  ++ + 
Sbjct: 90  LREMRHR--------FQT-QQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQG 137
Query: 469 KAKIANFSLAAPATND-----VMPKF-------------------DVFAFGVVLLELLS- 503
             K+++F L+    +D     V  KF                   D++AFGV++ E+ S 
Sbjct: 138 VVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSL 197
Query: 504 GKKATRTTENGKTA 517
           GK       N +TA
Sbjct: 198 GKMPYERFTNSETA 211

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 43/182 (23%)
Query: 355 LAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW 408
           +A+K I+E      D  EE  ++ +++H  LV+L GV  + Q    LV+E+ E+G L  +
Sbjct: 32  VAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE-QAPICLVFEFMEHGCLSDY 90
Query: 409 LHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF 468
           L                     L + LDV  G+ Y+ E     ++HRD+   N  +    
Sbjct: 91  LRTQRGLFAAETL---------LGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQ 138
Query: 469 KAKIANFSLAAPATND------------------------VMPKFDVFAFGVVLLELLSG 504
             K+++F +     +D                           K DV++FGV++ E+ S 
Sbjct: 139 VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSE 198
Query: 505 KK 506
            K
Sbjct: 199 GK 200

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 43/182 (23%)
Query: 355 LAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW 408
           +A+K I+E      D  EE  ++ +++H  LV+L GV  + Q    LV+E+ E+G L  +
Sbjct: 37  VAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE-QAPICLVFEFMEHGCLSDY 95
Query: 409 LHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF 468
           L                     L + LDV  G+ Y+ E     ++HRD+   N  +    
Sbjct: 96  LRTQRGLFAAETL---------LGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQ 143
Query: 469 KAKIANFSLA--------APATNDVMP----------------KFDVFAFGVVLLELLSG 504
             K+++F +           +T    P                K DV++FGV++ E+ S 
Sbjct: 144 VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSE 203
Query: 505 KK 506
            K
Sbjct: 204 GK 205

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 26/146 (17%)
Query: 355 LAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           +AVK +KE        D+  E  +L+++NH +++KL G  S   G   L+ EYA+ GSL 
Sbjct: 56  VAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACS-QDGPLLLIVEYAKYGSLR 114
Query: 407 KWLHPXXXXXXXXXXVIF--------------LTWSQRLRVALDVANGLQYMHEHAQPSI 452
            +L                             LT    +  A  ++ G+QY+   A+ S+
Sbjct: 115 GFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYL---AEMSL 171
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA 478
           VHRD+   NI +    K KI++F L+
Sbjct: 172 VHRDLAARNILVAEGRKMKISDFGLS 197

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 47/183 (25%)
Query: 355 LAVKKIKEDVTEELR--------ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           +A+K +K   TE  R        I+ + +H N+++L GV +  +    +V EY ENGSLD
Sbjct: 80  VAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGR-LAMIVTEYMENGSLD 138
Query: 407 KWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS 466
            +L                T  Q + +   V  G++Y+ +      VHRD+   N+ +DS
Sbjct: 139 TFLRTHDGQ---------FTIMQLVGMLRGVGAGMRYLSDLG---YVHRDLAARNVLVDS 186
Query: 467 RFKAKIANFSLAAPATNDVMPKF--------------------------DVFAFGVVLLE 500
               K+++F L+    +D    +                          DV++FGVV+ E
Sbjct: 187 NLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWE 246
Query: 501 LLS 503
           +L+
Sbjct: 247 VLA 249

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 47/183 (25%)
Query: 355 LAVKKIKEDVTEELR--------ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           +A+K +K   TE  R        I+ + +H N+++L GV +  +    +V EY ENGSLD
Sbjct: 80  VAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGR-LAMIVTEYMENGSLD 138
Query: 407 KWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS 466
            +L                T  Q + +   V  G++Y+ +      VHRD+   N+ +DS
Sbjct: 139 TFLRTHDGQ---------FTIMQLVGMLRGVGAGMRYLSDLG---YVHRDLAARNVLVDS 186
Query: 467 RFKAKIANFSL----------AAPATNDVMP----------------KFDVFAFGVVLLE 500
               K+++F L          A   T   +P                  DV++FGVV+ E
Sbjct: 187 NLVCKVSDFGLSRVLEDDPDAAXTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWE 246
Query: 501 LLS 503
           +L+
Sbjct: 247 VLA 249

>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 43/193 (22%)
Query: 349 TIDGKVLAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEY 399
           T   + +AVK +KE  T         EL+IL  I +H N+V L+G  +   G   ++ E+
Sbjct: 54  TATXRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEF 113
Query: 400 AENGSLDKWLHPXXXXXXXXXXVI--FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
            + G+L  +L            +   FLT    +  +  VA G++++   A    +HRD+
Sbjct: 114 CKFGNLSTYLRSKRNEFVPYKDLYKDFLTLEHLICYSFQVAKGMEFL---ASRKXIHRDL 170
Query: 458 RTNNIQLDSRFKAKIANFSLAAPATNDVMPKF---------------------------D 490
              NI L  +   KI +F LA     D  P +                           D
Sbjct: 171 AARNILLSEKNVVKICDFGLARDIYKD--PDYVRKGDARLPLKWMAPETIFDRVYTIQSD 228
Query: 491 VFAFGVVLLELLS 503
           V++FGV+L E+ S
Sbjct: 229 VWSFGVLLWEIFS 241

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 42/194 (21%)
Query: 351 DGKVLAVKKIKE-------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENG 403
           D  ++AVK +KE       D   E  +L  + H ++V+  GV ++ +    +V+EY  +G
Sbjct: 70  DKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGR-PLLMVFEYMRHG 128
Query: 404 SLDKWLH---PXXXXXXXXXXVIF--LTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIR 458
            L+++L    P          V    L   Q L VA  VA G+ Y+   A    VHRD+ 
Sbjct: 129 DLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYL---AGLHFVHRDLA 185
Query: 459 TNNIQLDSRFKAKIANFSLA---------------------APATNDVMPKF----DVFA 493
           T N  +      KI +F ++                      P  + +  KF    DV++
Sbjct: 186 TRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWS 245
Query: 494 FGVVLLELLS-GKK 506
           FGVVL E+ + GK+
Sbjct: 246 FGVVLWEIFTYGKQ 259

>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 43/193 (22%)
Query: 349 TIDGKVLAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEY 399
           T   + +AVK +KE  T         EL+IL  I +H N+V L+G  +   G   ++ E+
Sbjct: 54  TATXRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEF 113
Query: 400 AENGSLDKWLHPXXXXXXXXXXVI--FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
            + G+L  +L            +   FLT    +  +  VA G++++   A    +HRD+
Sbjct: 114 CKFGNLSTYLRSKRNEFVPYKDLYKDFLTLEHLIXYSFQVAKGMEFL---ASRKXIHRDL 170
Query: 458 RTNNIQLDSRFKAKIANFSLAAPATNDVMPKF---------------------------D 490
              NI L  +   KI +F LA     D  P +                           D
Sbjct: 171 AARNILLSEKNVVKIXDFGLARDIYKD--PDYVRKGDARLPLKWMAPETIFDRVYTIQSD 228
Query: 491 VFAFGVVLLELLS 503
           V++FGV+L E+ S
Sbjct: 229 VWSFGVLLWEIFS 241

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 46/186 (24%)
Query: 352 GKVLAVKKIKEDVTEELR-------ILQRINHANLVKLMGVS-SDSQGNRFLVYEYAENG 403
           G+V+AVKK++    E LR       IL+ + H N+VK  GV  S  + N  L+ EY   G
Sbjct: 40  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 99
Query: 404 SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
           SL  +L               +   + L+    +  G++Y+        +HR++ T NI 
Sbjct: 100 SLRDYLQKHKER---------IDHIKLLQYTSQICKGMEYL---GTKRYIHRNLATRNIL 147
Query: 464 LDSRFKAKIANFSLAAPATND----------------------VMPKF----DVFAFGVV 497
           +++  + KI +F L      D                         KF    DV++FGVV
Sbjct: 148 VENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 207
Query: 498 LLELLS 503
           L EL +
Sbjct: 208 LYELFT 213

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 47/203 (23%)
Query: 346 YRATIDGKVLAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEY 399
           +R   D   +A+K IKE      +  EE +++  ++H  LV+L GV +  Q   F++ EY
Sbjct: 30  WRGQYD---VAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCT-KQRPIFIITEY 85
Query: 400 AENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
             NG L  +L              F T  Q L +  DV   ++Y+        +HRD+  
Sbjct: 86  MANGCLLNYLREMRHR--------FQT-QQLLEMCKDVCEAMEYLE---SKQFLHRDLAA 133
Query: 460 NNIQLDSRFKAKIANFSLAAPATND--------------------VMPKF----DVFAFG 495
            N  ++ +   K+++F L+    +D                    +  KF    D++AFG
Sbjct: 134 RNCLVNDQGVVKVSDFGLSRYVLDDEYTSSRGSKFPVRWSPPEVLMYSKFSSKSDIWAFG 193
Query: 496 VVLLELLS-GKKATRTTENGKTA 517
           V++ E+ S GK       N +TA
Sbjct: 194 VLMWEIYSLGKMPYERFTNSETA 216

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 42/194 (21%)
Query: 351 DGKVLAVKKIKE-------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENG 403
           D  ++AVK +KE       D   E  +L  + H ++V+  GV ++ +    +V+EY  +G
Sbjct: 47  DKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGR-PLLMVFEYMRHG 105
Query: 404 SLDKWLH---PXXXXXXXXXXVIF--LTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIR 458
            L+++L    P          V    L   Q L VA  VA G+ Y+   A    VHRD+ 
Sbjct: 106 DLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYL---AGLHFVHRDLA 162
Query: 459 TNNIQLDSRFKAKIANFSLA---------------------APATNDVMPKF----DVFA 493
           T N  +      KI +F ++                      P  + +  KF    DV++
Sbjct: 163 TRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWS 222
Query: 494 FGVVLLELLS-GKK 506
           FGVVL E+ + GK+
Sbjct: 223 FGVVLWEIFTYGKQ 236

>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase Domain From Human Length = 314

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 87/211 (41%), Gaps = 58/211 (27%)
Query: 345 VYRATIDGKVLAVK----KIKEDVTEELRILQR--INHANLVKLMGV---SSDSQGNRFL 395
           V++A +    +AVK    + K+    E  I     + H NL++ +      S+ +   +L
Sbjct: 31  VWKAQLMNDFVAVKIFPLQDKQSWQSEREIFSTPGMKHENLLQFIAAEKRGSNLEVELWL 90
Query: 396 VYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHA------- 448
           +  + + GSL  +L               +TW++   VA  ++ GL Y+HE         
Sbjct: 91  ITAFHDKGSLTDYLKGN-----------IITWNELCHVAETMSRGLSYLHEDVPWCRGEG 139
Query: 449 -QPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------------APAT--- 482
            +PSI HRD ++ N+ L S   A +A+F LA                      AP     
Sbjct: 140 HKPSIAHRDFKSKNVLLKSDLTAVLADFGLAVRFEPGKPPGDTHGQVGTRRYMAPEVLEG 199
Query: 483 -----NDVMPKFDVFAFGVVLLELLSGKKAT 508
                 D   + D++A G+VL EL+S  KA 
Sbjct: 200 AINFQRDAFLRIDMYAMGLVLWELVSRCKAA 230

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 42/194 (21%)
Query: 351 DGKVLAVKKIKE-------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENG 403
           D  ++AVK +KE       D   E  +L  + H ++V+  GV ++ +    +V+EY  +G
Sbjct: 41  DKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGR-PLLMVFEYMRHG 99
Query: 404 SLDKWLH---PXXXXXXXXXXVIF--LTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIR 458
            L+++L    P          V    L   Q L VA  VA G+ Y+   A    VHRD+ 
Sbjct: 100 DLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYL---AGLHFVHRDLA 156
Query: 459 TNNIQLDSRFKAKIANFSLA---------------------APATNDVMPKF----DVFA 493
           T N  +      KI +F ++                      P  + +  KF    DV++
Sbjct: 157 TRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWS 216
Query: 494 FGVVLLELLS-GKK 506
           FGVVL E+ + GK+
Sbjct: 217 FGVVLWEIFTYGKQ 230

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 106/268 (39%), Gaps = 69/268 (25%)
Query: 359 KIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXX 418
           K + D   E  I+ + +H N++ L GV +  +    ++ EY ENGSLD +L         
Sbjct: 51  KQRRDFLSEASIMGQFDHPNIIHLEGVVTKCK-PVMIITEYMENGSLDAFLRKNDGR--- 106
Query: 419 XXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
                  T  Q + +   + +G++Y+ +    S VHRD+   NI ++S    K+++F ++
Sbjct: 107 ------FTVIQLVGMLRGIGSGMKYLSDM---SYVHRDLAARNILVNSNLVCKVSDFGMS 157
Query: 479 APATND----------------------VMPKF----DVFAFGVVLLELLS-GKKATRTT 511
               +D                         KF    DV+++G+V+ E++S G++     
Sbjct: 158 RVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDM 217
Query: 512 ENGKTAVLWKEIXXXXXXXXXXXXXXXNWMDPNLESFY----PIDGALSLATLARACTMD 567
            N                               +E  Y    P+D  ++L  L   C   
Sbjct: 218 SNQDVI-------------------------KAIEEGYRLPPPMDCPIALHQLMLDCWQK 252
Query: 568 KSLSRPNMAEVVFNLSVLTQSTETLERS 595
           +   RP   ++V  L  L ++  +L+R+
Sbjct: 253 ERSDRPKFGQIVNMLDKLIRNPNSLKRT 280

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 49/184 (26%)
Query: 366 EELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSL-DKWLHPXXXXXXXXXXVIF 424
           EE+ +L+ ++H N++KL     D + N +LV E  + G L D+ +H           +I 
Sbjct: 85  EEVAVLKLLDHPNIMKLYDFFEDKR-NYYLVMECYKGGELFDEIIHRMKFNEVDAAVII- 142
Query: 425 LTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSLAAPA 481
                       V +G+ Y+H+H   +IVHRD++  N+ L+S+ K    KI +F L+A  
Sbjct: 143 ----------KQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGLSAVF 189
Query: 482 TND------------VMP---------KFDVFAFGVVLLELLSG---------KKATRTT 511
            N             + P         K DV++ GV+L  LL+G         ++  R  
Sbjct: 190 ENQKKMKERLGTAYYIAPEVLRKKYDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKV 249
Query: 512 ENGK 515
           E GK
Sbjct: 250 EKGK 253

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 39/177 (22%)
Query: 353 KVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPX 412
           KV   +K + D   E  I+ + +H N++ L GV + S+    +V EY ENGSLD +L   
Sbjct: 59  KVGYTEKQRRDFLGEASIMGQFDHPNIIHLEGVVTKSK-PVMIVTEYMENGSLDTFLKKN 117
Query: 413 XXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI 472
                        T  Q + +   ++ G++Y+ +      VHRD+   NI ++S    K+
Sbjct: 118 DGQ---------FTVIQLVGMLRGISAGMKYLSDMG---YVHRDLAARNILINSNLVCKV 165
Query: 473 ANFSLAAPATND----------------------VMPKF----DVFAFGVVLLELLS 503
           ++F L+    +D                         KF    DV+++G+V+ E++S
Sbjct: 166 SDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAFRKFTSASDVWSYGIVMWEVVS 222

>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A Resolution Length = 336

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 27/157 (17%)
Query: 344 SVYRATIDGKVLAVKKI----KEDVTEELRILQ--RINHANLVKLM----GVSSDSQGNR 393
           +VY+ ++D + +AVK      +++   E  I +   + H N+ + +     V++D +   
Sbjct: 28  AVYKGSLDERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEY 87
Query: 394 FLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMH------EH 447
            LV EY  NGSL K+L                 W    R+A  V  GL Y+H      +H
Sbjct: 88  LLVMEYYPNGSLXKYLSLHTS-----------DWVSSCRLAHSVTRGLAYLHTELPRGDH 136
Query: 448 AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND 484
            +P+I HRD+ + N+ + +     I++F L+   T +
Sbjct: 137 YKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGN 173

>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 84/209 (40%), Gaps = 51/209 (24%)
Query: 338 HYSIGKSVYRATIDGKV-------LAVKKIKEDVTE--------ELRILQRINHANLVKL 382
           H + G+ VY   + G         +AVK + E  +E        E  I+ ++NH N+V+ 
Sbjct: 55  HGAFGE-VYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKLNHQNIVRC 113
Query: 383 MGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQ 442
           +GVS  S   RF++ E    G L  +L            +  L     L VA D+A G Q
Sbjct: 114 IGVSLQSL-PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDL---LHVARDIACGCQ 169
Query: 443 YMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSLA--------------APATNDV 485
           Y+ E+     +HRDI   N  L        AKI +F +A              A      
Sbjct: 170 YLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKW 226
Query: 486 MP-----------KFDVFAFGVVLLELLS 503
           MP           K D ++FGV+L E+ S
Sbjct: 227 MPPEAFMEGIFTSKTDTWSFGVLLWEIFS 255

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 106/268 (39%), Gaps = 69/268 (25%)
Query: 359 KIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXX 418
           K + D   E  I+ + +H N++ L GV +  +    ++ EY ENGSLD +L         
Sbjct: 57  KQRRDFLSEASIMGQFDHPNIIHLEGVVTKCK-PVMIITEYMENGSLDAFLRKNDGR--- 112
Query: 419 XXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
                  T  Q + +   + +G++Y+ +    S VHRD+   NI ++S    K+++F ++
Sbjct: 113 ------FTVIQLVGMLRGIGSGMKYLSDM---SYVHRDLAARNILVNSNLVCKVSDFGMS 163
Query: 479 APATND----------------------VMPKF----DVFAFGVVLLELLS-GKKATRTT 511
               +D                         KF    DV+++G+V+ E++S G++     
Sbjct: 164 RVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDM 223
Query: 512 ENGKTAVLWKEIXXXXXXXXXXXXXXXNWMDPNLESFY----PIDGALSLATLARACTMD 567
            N                               +E  Y    P+D  ++L  L   C   
Sbjct: 224 SNQDVI-------------------------KAIEEGYRLPPPMDCPIALHQLMLDCWQK 258
Query: 568 KSLSRPNMAEVVFNLSVLTQSTETLERS 595
           +   RP   ++V  L  L ++  +L+R+
Sbjct: 259 ERSDRPKFGQIVNMLDKLIRNPNSLKRT 286

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 82/188 (43%), Gaps = 51/188 (27%)
Query: 352 GKVLAVKKIKEDVTEELR--------ILQRINHANLVKLMGVSSDSQGNRF--LVYEYAE 401
           G+++AVK +KE    +LR        IL+ + H ++VK  G   D QG +   LV EY  
Sbjct: 37  GEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKYKGCCED-QGEKSVQLVMEYVP 95
Query: 402 NGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNN 461
            GSL  +L P             +  +Q L  A  +  G+ Y+H  AQ   +HR +   N
Sbjct: 96  LGSLRDYL-PRHC----------VGLAQLLLFAQQICEGMAYLH--AQ-HYIHRALAARN 141
Query: 462 IQLDSRFKAKIANFSL--AAPATNDVM--------PKF----------------DVFAFG 495
           + LD+    KI +F L  A P  ++          P F                DV++FG
Sbjct: 142 VLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKECKFYYASDVWSFG 201
Query: 496 VVLLELLS 503
           V L ELL+
Sbjct: 202 VTLYELLT 209

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 107/264 (40%), Gaps = 61/264 (23%)
Query: 359 KIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXX 418
           K + D   E  I+ + +H N++ L GV +  +    ++ EY ENGSLD +L         
Sbjct: 72  KQRRDFLSEASIMGQFDHPNIIHLEGVVTKCK-PVMIITEYMENGSLDAFLRKNDGR--- 127
Query: 419 XXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
                  T  Q + +   + +G++Y+ +    S VHRD+   NI ++S    K+++F ++
Sbjct: 128 ------FTVIQLVGMLRGIGSGMKYLSDM---SAVHRDLAARNILVNSNLVCKVSDFGMS 178
Query: 479 APATND----------------------VMPKF----DVFAFGVVLLELLS-GKKATRTT 511
               +D                         KF    DV+++G+V+ E++S G++     
Sbjct: 179 RVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDM 238
Query: 512 ENGKTAVLWKEIXXXXXXXXXXXXXXXNWMDPNLESFYPIDGALSLATLARACTMDKSLS 571
            N       +E                 +  P      P+D  ++L  L   C   +   
Sbjct: 239 SNQDVIKAIEE----------------GYRLPP-----PMDCPIALHQLMLDCWQKERSD 277
Query: 572 RPNMAEVVFNLSVLTQSTETLERS 595
           RP   ++V  L  L ++  +L+R+
Sbjct: 278 RPKFGQIVNMLDKLIRNPNSLKRT 301

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 82/188 (43%), Gaps = 51/188 (27%)
Query: 352 GKVLAVKKIKEDVTEELR--------ILQRINHANLVKLMGVSSDSQGNRF--LVYEYAE 401
           G+++AVK +KE    +LR        IL+ + H ++VK  G   D QG +   LV EY  
Sbjct: 38  GEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKYKGCCED-QGEKSVQLVMEYVP 96
Query: 402 NGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNN 461
            GSL  +L P             +  +Q L  A  +  G+ Y+H  AQ   +HR +   N
Sbjct: 97  LGSLRDYL-PRHC----------VGLAQLLLFAQQICEGMAYLH--AQ-HYIHRALAARN 142
Query: 462 IQLDSRFKAKIANFSL--AAPATNDVM--------PKF----------------DVFAFG 495
           + LD+    KI +F L  A P  ++          P F                DV++FG
Sbjct: 143 VLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKECKFYYASDVWSFG 202
Query: 496 VVLLELLS 503
           V L ELL+
Sbjct: 203 VTLYELLT 210

>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 84/209 (40%), Gaps = 51/209 (24%)
Query: 338 HYSIGKSVYRATIDGKV-------LAVKKIKEDVTE--------ELRILQRINHANLVKL 382
           H + G+ VY   + G         +AVK + E  +E        E  I+ ++NH N+V+ 
Sbjct: 41  HGAFGE-VYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKLNHQNIVRC 99
Query: 383 MGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQ 442
           +GVS  S   RF++ E    G L  +L            +  L     L VA D+A G Q
Sbjct: 100 IGVSLQSL-PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDL---LHVARDIACGCQ 155
Query: 443 YMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSLA--------------APATNDV 485
           Y+ E+     +HRDI   N  L        AKI +F +A              A      
Sbjct: 156 YLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKW 212
Query: 486 MP-----------KFDVFAFGVVLLELLS 503
           MP           K D ++FGV+L E+ S
Sbjct: 213 MPPEAFMEGIFTSKTDTWSFGVLLWEIFS 241

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 51/188 (27%)
Query: 352 GKVLAVKKIKEDV--------TEELRILQRINHANLVKLMGVSSDSQGNRFL--VYEYAE 401
           G+++AVK +K D          +E+ IL+ + H +++K  G   D QG + L  V EY  
Sbjct: 43  GEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHIIKYKGCCED-QGEKSLQLVMEYVP 101
Query: 402 NGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNN 461
            GSL  +L P             +  +Q L  A  +  G+ Y+H  AQ   +HR++   N
Sbjct: 102 LGSLRDYL-PRHS----------IGLAQLLLFAQQICEGMAYLH--AQ-HYIHRNLAARN 147
Query: 462 IQLDSRFKAKIANFSL--AAPATNDVM--------PKF----------------DVFAFG 495
           + LD+    KI +F L  A P  ++          P F                DV++FG
Sbjct: 148 VLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFG 207
Query: 496 VVLLELLS 503
           V L ELL+
Sbjct: 208 VTLYELLT 215

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 47/213 (22%)
Query: 324 EIEVIMESTMNLSEHYSIGK--SVYRATIDGKV-LAVKKIKED------VTEELRILQRI 374
           E EV  E T+ L E    G+   V+    +G   +AVK +K+          E  +++++
Sbjct: 3   EWEVPRE-TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQL 61
Query: 375 NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVA 434
            H  LV+L  V +  Q   +++ EY ENGSL  +L             I LT ++ L +A
Sbjct: 62  QHQRLVRLYAVVT--QEPIYIITEYMENGSLVDFLKTPSG--------IKLTINKLLDMA 111
Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------------- 478
             +A G+ ++ E    + +HR++R  NI +      KIA+F LA                
Sbjct: 112 AQIAEGMAFIEER---NYIHRNLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKF 168
Query: 479 -----APAT---NDVMPKFDVFAFGVVLLELLS 503
                AP          K DV++FG++L E+++
Sbjct: 169 PIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 201

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 51/188 (27%)
Query: 352 GKVLAVKKIKEDV--------TEELRILQRINHANLVKLMGVSSDSQGNRFL--VYEYAE 401
           G+++AVK +K D          +E+ IL+ + H +++K  G   D QG + L  V EY  
Sbjct: 43  GEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHIIKYKGCCED-QGEKSLQLVMEYVP 101
Query: 402 NGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNN 461
            GSL  +L P             +  +Q L  A  +  G+ Y+H       +HR++   N
Sbjct: 102 LGSLRDYL-PRHS----------IGLAQLLLFAQQICEGMAYLHSQ---HYIHRNLAARN 147
Query: 462 IQLDSRFKAKIANFSL--AAPATNDVM--------PKF----------------DVFAFG 495
           + LD+    KI +F L  A P  ++          P F                DV++FG
Sbjct: 148 VLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFG 207
Query: 496 VVLLELLS 503
           V L ELL+
Sbjct: 208 VTLYELLT 215

>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 367

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 83/209 (39%), Gaps = 51/209 (24%)
Query: 338 HYSIGKSVYRATIDGKV-------LAVKKIKEDVTE--------ELRILQRINHANLVKL 382
           H + G+ VY   + G         +AVK + E  +E        E  I+ + NH N+V+ 
Sbjct: 81  HGAFGE-VYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRC 139
Query: 383 MGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQ 442
           +GVS  S   RF++ E    G L  +L            +  L     L VA D+A G Q
Sbjct: 140 IGVSLQSL-PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDL---LHVARDIACGCQ 195
Query: 443 YMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSLA--------------APATNDV 485
           Y+ E+     +HRDI   N  L        AKI +F +A              A      
Sbjct: 196 YLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKW 252
Query: 486 MP-----------KFDVFAFGVVLLELLS 503
           MP           K D ++FGV+L E+ S
Sbjct: 253 MPPEAFMEGIFTSKTDTWSFGVLLWEIFS 281

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 42/177 (23%)
Query: 355 LAVKKIKEDVTE------ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW 408
           +AVK +KED  E      E  +++ I H NLV+L+GV +  +   ++V EY   G+L  +
Sbjct: 60  VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-LEPPFYIVTEYMPYGNLLDY 118
Query: 409 LHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF 468
           L            ++++        A  +++ ++Y+    + + +HRD+   N  +    
Sbjct: 119 LRECNREEVTAVVLLYM--------ATQISSAMEYLE---KKNFIHRDLAARNCLVGENH 167
Query: 469 KAKIANFSLAAPATNDVMP------------------------KFDVFAFGVVLLEL 501
             K+A+F L+   T D                           K DV+AFGV+L E+
Sbjct: 168 VVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEI 224

>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 83/209 (39%), Gaps = 51/209 (24%)
Query: 338 HYSIGKSVYRATIDGKV-------LAVKKIKEDVTE--------ELRILQRINHANLVKL 382
           H + G+ VY   + G         +AVK + E  +E        E  I+ + NH N+V+ 
Sbjct: 55  HGAFGE-VYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRC 113
Query: 383 MGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQ 442
           +GVS  S   RF++ E    G L  +L            +  L     L VA D+A G Q
Sbjct: 114 IGVSLQSL-PRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDL---LHVARDIACGCQ 169
Query: 443 YMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSLA--------------APATNDV 485
           Y+ E+     +HRDI   N  L        AKI +F +A              A      
Sbjct: 170 YLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKW 226
Query: 486 MP-----------KFDVFAFGVVLLELLS 503
           MP           K D ++FGV+L E+ S
Sbjct: 227 MPPEAFMEGIFTSKTDTWSFGVLLWEIFS 255

>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 344

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 83/209 (39%), Gaps = 51/209 (24%)
Query: 338 HYSIGKSVYRATIDGKV-------LAVKKIKEDVTE--------ELRILQRINHANLVKL 382
           H + G+ VY   + G         +AVK + E  +E        E  I+ + NH N+V+ 
Sbjct: 58  HGAFGE-VYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRC 116
Query: 383 MGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQ 442
           +GVS  S   RF++ E    G L  +L            +  L     L VA D+A G Q
Sbjct: 117 IGVSLQSL-PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDL---LHVARDIACGCQ 172
Query: 443 YMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSLA--------------APATNDV 485
           Y+ E+     +HRDI   N  L        AKI +F +A              A      
Sbjct: 173 YLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKW 229
Query: 486 MP-----------KFDVFAFGVVLLELLS 503
           MP           K D ++FGV+L E+ S
Sbjct: 230 MPPEAFMEGIFTSKTDTWSFGVLLWEIFS 258

>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In Complex With Crizotinib Length = 327

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 83/209 (39%), Gaps = 51/209 (24%)
Query: 338 HYSIGKSVYRATIDGKV-------LAVKKIKEDVTE--------ELRILQRINHANLVKL 382
           H + G+ VY   + G         +AVK + E  +E        E  I+ + NH N+V+ 
Sbjct: 40  HGAFGE-VYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRC 98
Query: 383 MGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQ 442
           +GVS  S   RF++ E    G L  +L            +  L     L VA D+A G Q
Sbjct: 99  IGVSLQSL-PRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDL---LHVARDIACGCQ 154
Query: 443 YMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSLA--------------APATNDV 485
           Y+ E+     +HRDI   N  L        AKI +F +A              A      
Sbjct: 155 YLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKW 211
Query: 486 MP-----------KFDVFAFGVVLLELLS 503
           MP           K D ++FGV+L E+ S
Sbjct: 212 MPPEAFMEGIFTSKTDTWSFGVLLWEIFS 240

>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex With Nvp- Tae684 Length = 315

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 83/209 (39%), Gaps = 51/209 (24%)
Query: 338 HYSIGKSVYRATIDGKV-------LAVKKIKEDVTE--------ELRILQRINHANLVKL 382
           H + G+ VY   + G         +AVK + E  +E        E  I+ + NH N+V+ 
Sbjct: 32  HGAFGE-VYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRC 90
Query: 383 MGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQ 442
           +GVS  S   RF++ E    G L  +L            +  L     L VA D+A G Q
Sbjct: 91  IGVSLQSL-PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDL---LHVARDIACGCQ 146
Query: 443 YMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSLA--------------APATNDV 485
           Y+ E+     +HRDI   N  L        AKI +F +A              A      
Sbjct: 147 YLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKW 203
Query: 486 MP-----------KFDVFAFGVVLLELLS 503
           MP           K D ++FGV+L E+ S
Sbjct: 204 MPPEAFMEGIFTSKTDTWSFGVLLWEIFS 232

>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In Complex With Crizotinib (Pf-02341066) Length = 327

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 83/209 (39%), Gaps = 51/209 (24%)
Query: 338 HYSIGKSVYRATIDGKV-------LAVKKIKEDVTE--------ELRILQRINHANLVKL 382
           H + G+ VY   + G         +AVK + E  +E        E  I+ + NH N+V+ 
Sbjct: 40  HGAFGE-VYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRC 98
Query: 383 MGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQ 442
           +GVS  S   RF++ E    G L  +L            +  L     L VA D+A G Q
Sbjct: 99  IGVSLQSL-PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDL---LHVARDIACGCQ 154
Query: 443 YMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSLA--------------APATNDV 485
           Y+ E+     +HRDI   N  L        AKI +F +A              A      
Sbjct: 155 YLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKW 211
Query: 486 MP-----------KFDVFAFGVVLLELLS 503
           MP           K D ++FGV+L E+ S
Sbjct: 212 MPPEAFMEGIFTSKTDTWSFGVLLWEIFS 240

>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Ch5424802 Length = 344

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 83/209 (39%), Gaps = 51/209 (24%)
Query: 338 HYSIGKSVYRATIDGKV-------LAVKKIKEDVTE--------ELRILQRINHANLVKL 382
           H + G+ VY   + G         +AVK + E  +E        E  I+ + NH N+V+ 
Sbjct: 57  HGAFGE-VYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRC 115
Query: 383 MGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQ 442
           +GVS  S   RF++ E    G L  +L            +  L     L VA D+A G Q
Sbjct: 116 IGVSLQSL-PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDL---LHVARDIACGCQ 171
Query: 443 YMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSLA--------------APATNDV 485
           Y+ E+     +HRDI   N  L        AKI +F +A              A      
Sbjct: 172 YLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKW 228
Query: 486 MP-----------KFDVFAFGVVLLELLS 503
           MP           K D ++FGV+L E+ S
Sbjct: 229 MPPEAFMEGIFTSKTDTWSFGVLLWEIFS 257

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 355 LAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           +AVK +KE        D+  E  +L+++NH +++KL G  S   G   L+ EYA+ GSL 
Sbjct: 56  VAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACS-QDGPLLLIVEYAKYGSLR 114
Query: 407 KWLHPXXXXXXXXXXVIF--------------LTWSQRLRVALDVANGLQYMHEHAQPSI 452
            +L                             LT    +  A  ++ G+QY+   A+  +
Sbjct: 115 GFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYL---AEMKL 171
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA 478
           VHRD+   NI +    K KI++F L+
Sbjct: 172 VHRDLAARNILVAEGRKMKISDFGLS 197

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 355 LAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           +AVK +KE        D+  E  +L+++NH +++KL G  S   G   L+ EYA+ GSL 
Sbjct: 56  VAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACS-QDGPLLLIVEYAKYGSLR 114
Query: 407 KWLHPXXXXXXXXXXVIF--------------LTWSQRLRVALDVANGLQYMHEHAQPSI 452
            +L                             LT    +  A  ++ G+QY+   A+  +
Sbjct: 115 GFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYL---AEMKL 171
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA 478
           VHRD+   NI +    K KI++F L+
Sbjct: 172 VHRDLAARNILVAEGRKMKISDFGLS 197

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G + K L          
Sbjct: 56  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPRGEVYKELQ-KLSKFDEQ 113
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 114 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV 161
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 162 HAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 208

>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 83/209 (39%), Gaps = 51/209 (24%)
Query: 338 HYSIGKSVYRATIDGKV-------LAVKKIKEDVTE--------ELRILQRINHANLVKL 382
           H + G+ VY   + G         +AVK + E  +E        E  I+ + NH N+V+ 
Sbjct: 41  HGAFGE-VYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRC 99
Query: 383 MGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQ 442
           +GVS  S   RF++ E    G L  +L            +  L     L VA D+A G Q
Sbjct: 100 IGVSLQSL-PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDL---LHVARDIACGCQ 155
Query: 443 YMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSLA--------------APATNDV 485
           Y+ E+     +HRDI   N  L        AKI +F +A              A      
Sbjct: 156 YLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFGMAQDIYRASYYRKGGCAMLPVKW 212
Query: 486 MP-----------KFDVFAFGVVLLELLS 503
           MP           K D ++FGV+L E+ S
Sbjct: 213 MPPEAFMEGIFTSKTDTWSFGVLLWEIFS 241

>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 57/205 (27%)
Query: 345 VYRATIDGKVLAVK----KIKEDVTEELRI--LQRINHANLVKLMGVSSDSQG---NRFL 395
           V++A +  + +AVK    + K+    E  +  L  + H N+++ +G          + +L
Sbjct: 40  VWKAQLLNEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWL 99
Query: 396 VYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHA------- 448
           +  + E GSL  +L               ++W++   +A  +A GL Y+HE         
Sbjct: 100 ITAFHEKGSLSDFLKAN-----------VVSWNELCHIAETMARGLAYLHEDIPGLKDGH 148
Query: 449 QPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------------APAT---- 482
           +P+I HRDI++ N+ L +   A IA+F LA                      AP      
Sbjct: 149 KPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGA 208
Query: 483 ----NDVMPKFDVFAFGVVLLELLS 503
                D   + D++A G+VL EL S
Sbjct: 209 INFQRDAFLRIDMYAMGLVLWELAS 233

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 53  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 110
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIANF  S+
Sbjct: 111 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIANFGWSV 158
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 159 HAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 205

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 43/182 (23%)
Query: 355 LAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW 408
           +A+K I+E      D  EE  ++ +++H  LV+L GV  + Q    LV E+ E+G L  +
Sbjct: 35  VAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE-QAPICLVTEFMEHGCLSDY 93
Query: 409 LHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF 468
           L                     L + LDV  G+ Y+ E     ++HRD+   N  +    
Sbjct: 94  LRTQRGLFAAETL---------LGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQ 141
Query: 469 KAKIANFSLA--------APATNDVMP----------------KFDVFAFGVVLLELLSG 504
             K+++F +           +T    P                K DV++FGV++ E+ S 
Sbjct: 142 VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSE 201
Query: 505 KK 506
            K
Sbjct: 202 GK 203

>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Piperidine-Carboxamide Inhibitor 2 Length = 327

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 83/209 (39%), Gaps = 51/209 (24%)
Query: 338 HYSIGKSVYRATIDGKV-------LAVKKIKEDVTE--------ELRILQRINHANLVKL 382
           H + G+ VY   + G         +AVK + E  +E        E  I+ + NH N+V+ 
Sbjct: 41  HGAFGE-VYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRC 99
Query: 383 MGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQ 442
           +GVS  S   RF++ E    G L  +L            +  L     L VA D+A G Q
Sbjct: 100 IGVSLQSL-PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDL---LHVARDIACGCQ 155
Query: 443 YMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSLA--------------APATNDV 485
           Y+ E+     +HRDI   N  L        AKI +F +A              A      
Sbjct: 156 YLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKW 212
Query: 486 MP-----------KFDVFAFGVVLLELLS 503
           MP           K D ++FGV+L E+ S
Sbjct: 213 MPPEAFMEGIFTSKTDTWSFGVLLWEIFS 241

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 90/216 (41%), Gaps = 40/216 (18%)
Query: 331 STMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQ 390
             + + EH   G  V    ++ + +    +   +  E++ L+   H +++KL  V S + 
Sbjct: 25  GKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVIS-TP 83
Query: 391 GNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
            + F+V EY   G L  ++             +F    Q++  A+D      Y H H   
Sbjct: 84  TDFFMVMEYVSGGELFDYICKHGRVEEMEARRLF----QQILSAVD------YCHRHM-- 131
Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSL-------------------AAPATND----VMP 487
            +VHRD++  N+ LD+   AKIA+F L                   AAP          P
Sbjct: 132 -VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGP 190
Query: 488 KFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEI 523
           + D+++ GV+L  LL G   T   ++     L+K+I
Sbjct: 191 EVDIWSCGVILYALLCG---TLPFDDEHVPTLFKKI 223

>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]pyrimidine Length = 316

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 43/195 (22%)
Query: 349 TIDGKVLAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEY 399
           T   + +AVK +KE  T         EL+IL  I +H N+V L+G  +   G   ++ E+
Sbjct: 54  TATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEF 113
Query: 400 AENGSLDKWLHPXXXXXXXXXXVI------FLTWSQRLRVALDVANGLQYMHEHAQPSIV 453
            + G+L  +L                    FLT    +  +  VA G++++   A    +
Sbjct: 114 CKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFL---ASRKCI 170
Query: 454 HRDIRTNNIQLDSRFKAKIANFSLAAPATNDV---------MP----------------K 488
           HRD+   NI L  +   KI +F LA     D          +P                +
Sbjct: 171 HRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQ 230
Query: 489 FDVFAFGVVLLELLS 503
            DV++FGV+L E+ S
Sbjct: 231 SDVWSFGVLLWEIFS 245

>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With A Piperidine-Carboxamide Inhibitor Length = 333

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 83/209 (39%), Gaps = 51/209 (24%)
Query: 338 HYSIGKSVYRATIDGKV-------LAVKKIKEDVTE--------ELRILQRINHANLVKL 382
           H + G+ VY   + G         +AVK + E  +E        E  I+ + NH N+V+ 
Sbjct: 47  HGAFGE-VYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRC 105
Query: 383 MGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQ 442
           +GVS  S   RF++ E    G L  +L            +  L     L VA D+A G Q
Sbjct: 106 IGVSLQSL-PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDL---LHVARDIACGCQ 161
Query: 443 YMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSLA--------------APATNDV 485
           Y+ E+     +HRDI   N  L        AKI +F +A              A      
Sbjct: 162 YLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKW 218
Query: 486 MP-----------KFDVFAFGVVLLELLS 503
           MP           K D ++FGV+L E+ S
Sbjct: 219 MPPEAFMEGIFTSKTDTWSFGVLLWEIFS 247

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 90/216 (41%), Gaps = 40/216 (18%)
Query: 331 STMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQ 390
             + + EH   G  V    ++ + +    +   +  E++ L+   H +++KL  V S + 
Sbjct: 25  GKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVIS-TP 83
Query: 391 GNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
            + F+V EY   G L  ++             +F    Q++  A+D      Y H H   
Sbjct: 84  TDFFMVMEYVSGGELFDYICKHGRVEEMEARRLF----QQILSAVD------YCHRHM-- 131
Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSL-------------------AAPATND----VMP 487
            +VHRD++  N+ LD+   AKIA+F L                   AAP          P
Sbjct: 132 -VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRDSCGSPNYAAPEVISGRLYAGP 190
Query: 488 KFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEI 523
           + D+++ GV+L  LL G   T   ++     L+K+I
Sbjct: 191 EVDIWSCGVILYALLCG---TLPFDDEHVPTLFKKI 223

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 44/189 (23%)
Query: 344 SVYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV 396
            V+  T +G   +A+K +K      E   +E +++++I H  LV+L  V S+     ++V
Sbjct: 33  EVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKIRHEKLVQLYAVVSEE--PIYIV 90
Query: 397 YEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            EY   GSL  +L              +L   Q + +A  +A+G+ Y+      + VHRD
Sbjct: 91  TEYMSKGSLLDFLKGEMGK--------YLRLPQLVDMAAQIASGMAYVERM---NYVHRD 139
Query: 457 IRTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVF 492
           +R  NI +      K+A+F LA                     AP          K DV+
Sbjct: 140 LRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVW 199
Query: 493 AFGVVLLEL 501
           +FG++L EL
Sbjct: 200 SFGILLTEL 208

>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Nicotinamide Inhibitor Length = 314

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 43/195 (22%)
Query: 349 TIDGKVLAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEY 399
           T   + +AVK +KE  T         EL+IL  I +H N+V L+G  +   G   ++ E+
Sbjct: 45  TATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEF 104
Query: 400 AENGSLDKWLHPXXXXXXXXXXVI------FLTWSQRLRVALDVANGLQYMHEHAQPSIV 453
            + G+L  +L                    FLT    +  +  VA G++++   A    +
Sbjct: 105 CKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFL---ASRKCI 161
Query: 454 HRDIRTNNIQLDSRFKAKIANFSLAAPATNDV---------MP----------------K 488
           HRD+   NI L  +   KI +F LA     D          +P                +
Sbjct: 162 HRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQ 221
Query: 489 FDVFAFGVVLLELLS 503
            DV++FGV+L E+ S
Sbjct: 222 SDVWSFGVLLWEIFS 236

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G + K L          
Sbjct: 56  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPRGEVYKELQ-KLSKFDEQ 113
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 114 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV 161
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 162 HAPSSRRXXLXGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 208

>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy) Quinolin-4-Yloxy)benzofuran-3-Carboxamide) Length = 316

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 79/197 (40%), Gaps = 47/197 (23%)
Query: 349 TIDGKVLAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEY 399
           T   + +AVK +KE  T         EL+IL  I +H N+V L+G  +   G   ++ E+
Sbjct: 54  TATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEF 113
Query: 400 AENGSLDKWLHPXXXXXXXXXXVI------FLTWSQRLRVALDVANGLQYMHEHAQPSIV 453
            + G+L  +L                    FLT    +  +  VA G++++   A    +
Sbjct: 114 CKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFL---ASRKCI 170
Query: 454 HRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKF------------------------ 489
           HRD+   NI L  +   KI +F LA     D  P +                        
Sbjct: 171 HRDLAARNILLSEKNVVKICDFGLARDIYKD--PDYVRKGDARLPLKWMAPETIFDRVYT 228
Query: 490 ---DVFAFGVVLLELLS 503
              DV++FGV+L E+ S
Sbjct: 229 IQSDVWSFGVLLWEIFS 245

>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120 Length = 316

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 41/193 (21%)
Query: 349 TIDGKVLAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEY 399
           T   + +AVK +KE  T         EL+IL  I +H N+V L+G  +   G   ++ E+
Sbjct: 56  TATXRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEF 115
Query: 400 AENGSLDKWLHPXXXX----XXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHR 455
            + G+L  +L                  FLT    +  +  VA G++++   A    +HR
Sbjct: 116 CKFGNLSTYLRSKRNEFVPYKPEDLYKDFLTLEHLIXYSFQVAKGMEFL---ASRKXIHR 172
Query: 456 DIRTNNIQLDSRFKAKIANFSLAAPATNDV---------MP----------------KFD 490
           D+   NI L  +   KI +F LA     D          +P                + D
Sbjct: 173 DLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSD 232
Query: 491 VFAFGVVLLELLS 503
           V++FGV+L E+ S
Sbjct: 233 VWSFGVLLWEIFS 245

>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyrazolone Inhibitor Length = 314

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 79/197 (40%), Gaps = 47/197 (23%)
Query: 349 TIDGKVLAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEY 399
           T   + +AVK +KE  T         EL+IL  I +H N+V L+G  +   G   ++ E+
Sbjct: 45  TATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVITEF 104
Query: 400 AENGSLDKWLHPXXXXXXXXXXVI------FLTWSQRLRVALDVANGLQYMHEHAQPSIV 453
            + G+L  +L                    FLT    +  +  VA G++++   A    +
Sbjct: 105 CKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFL---ASRKCI 161
Query: 454 HRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKF------------------------ 489
           HRD+   NI L  +   KI +F LA     D  P +                        
Sbjct: 162 HRDLAARNILLSEKNVVKICDFGLARDIYKD--PDYVRKGDARLPLKWMAPETIFDRVYT 219
Query: 490 ---DVFAFGVVLLELLS 503
              DV++FGV+L E+ S
Sbjct: 220 IQSDVWSFGVLLWEIFS 236

>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2 With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 318

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 79/197 (40%), Gaps = 47/197 (23%)
Query: 349 TIDGKVLAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEY 399
           T   + +AVK +KE  T         EL+IL  I +H N+V L+G  +   G   ++ E+
Sbjct: 56  TATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEF 115
Query: 400 AENGSLDKWLHPXXXXXXXXXXVI------FLTWSQRLRVALDVANGLQYMHEHAQPSIV 453
            + G+L  +L                    FLT    +  +  VA G++++   A    +
Sbjct: 116 CKFGNLSTYLRSKRNEFVPYKEAPEDLYKDFLTLEHLICYSFQVAKGMEFL---ASRKCI 172
Query: 454 HRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKF------------------------ 489
           HRD+   NI L  +   KI +F LA     D  P +                        
Sbjct: 173 HRDLAARNILLSEKNVVKICDFGLARDIYKD--PDYVRKGDARLPLKWMAPETIFDRVYT 230
Query: 490 ---DVFAFGVVLLELLS 503
              DV++FGV+L E+ S
Sbjct: 231 IQSDVWSFGVLLWEIFS 247

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 54  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 111
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIANF  S+
Sbjct: 112 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIANFGWSV 159
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 160 HAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 206

>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Acyliminobenzimidazole Inhibitor 1 Length = 353

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 83/209 (39%), Gaps = 51/209 (24%)
Query: 338 HYSIGKSVYRATIDGKV-------LAVKKIKEDVTE--------ELRILQRINHANLVKL 382
           H + G+ VY   + G         +AVK + E  +E        E  I+ + NH N+V+ 
Sbjct: 67  HGAFGE-VYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRC 125
Query: 383 MGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQ 442
           +GVS  S   RF++ E    G L  +L            +  L     L VA D+A G Q
Sbjct: 126 IGVSLQSL-PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDL---LHVARDIACGCQ 181
Query: 443 YMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSLA--------------APATNDV 485
           Y+ E+     +HRDI   N  L        AKI +F +A              A      
Sbjct: 182 YLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKW 238
Query: 486 MP-----------KFDVFAFGVVLLELLS 503
           MP           K D ++FGV+L E+ S
Sbjct: 239 MPPEAFMEGIFTSKTDTWSFGVLLWEIFS 267

>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase Domains) In Complex With Axitinib (Ag-013736) (N-Methyl-2-( 3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)- Benzamide) Length = 353

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 47/193 (24%)
Query: 353 KVLAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENG 403
           + +AVK +KE  T         EL+IL  I +H N+V L+G  +   G   ++ E+ + G
Sbjct: 95  RTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFG 154
Query: 404 SLDKWLHPXXXXXXXXXXVI------FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
           +L  +L                    FLT    +  +  VA G++++   A    +HRD+
Sbjct: 155 NLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFL---ASRKCIHRDL 211
Query: 458 RTNNIQLDSRFKAKIANFSLAAPATNDVMPKF---------------------------D 490
              NI L  +   KI +F LA     D  P +                           D
Sbjct: 212 AARNILLSEKNVVKICDFGLARDIYKD--PDYVRKGDARLPLKWMAPETIFDRVYTIQSD 269
Query: 491 VFAFGVVLLELLS 503
           V++FGV+L E+ S
Sbjct: 270 VWSFGVLLWEIFS 282

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 89/209 (42%), Gaps = 49/209 (23%)
Query: 329 MESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE------ELRILQRINH 376
           ME T +++  + +G   Y    +G        +AVK +KED  E      E  +++ I H
Sbjct: 8   MERT-DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH 66
Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALD 436
            NLV+L+GV +  +   +++ E+   G+L  +L            ++++        A  
Sbjct: 67  PNLVQLLGVCT-REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYM--------ATQ 117
Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMP--------- 487
           +++ ++Y+    + + +HRD+   N  +      K+A+F L+   T D            
Sbjct: 118 ISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTFTAHAGAKFPI 174
Query: 488 ---------------KFDVFAFGVVLLEL 501
                          K DV+AFGV+L E+
Sbjct: 175 KWTAPESLAYNKFSIKSDVWAFGVLLWEI 203

>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea Inhibitor Length = 316

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 80/194 (41%), Gaps = 42/194 (21%)
Query: 349 TIDGKVLAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEY 399
           T   + +AVK +KE  T         EL+IL  I +H N+V L+G  +   G   ++ E+
Sbjct: 55  TATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEF 114
Query: 400 AENGSLDKWLHPXX-----XXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
            + G+L  +L                   FLT    +  +  VA G++++   A    +H
Sbjct: 115 CKFGNLSTYLRSKRNEFVPYKTPEDLYKDFLTLEHLICYSFQVAKGMEFL---ASRKCIH 171
Query: 455 RDIRTNNIQLDSRFKAKIANFSLAAPATNDV---------MP----------------KF 489
           RD+   NI L  +   KI +F LA     D          +P                + 
Sbjct: 172 RDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQS 231
Query: 490 DVFAFGVVLLELLS 503
           DV++FGV+L E+ S
Sbjct: 232 DVWSFGVLLWEIFS 245

>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridinyl-Triazine Inhibitor Length = 314

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 43/195 (22%)
Query: 349 TIDGKVLAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEY 399
           T   + +AVK +KE  T         EL+IL  I +H N+V L+G  +   G   ++ E+
Sbjct: 45  TATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVITEF 104
Query: 400 AENGSLDKWLHPXXXXXXXXXXVI------FLTWSQRLRVALDVANGLQYMHEHAQPSIV 453
            + G+L  +L                    FLT    +  +  VA G++++   A    +
Sbjct: 105 CKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFL---ASRKCI 161
Query: 454 HRDIRTNNIQLDSRFKAKIANFSLAAPATND---------VMP----------------K 488
           HRD+   NI L  +   KI +F LA     D          +P                +
Sbjct: 162 HRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQ 221
Query: 489 FDVFAFGVVLLELLS 503
            DV++FGV+L E+ S
Sbjct: 222 SDVWSFGVLLWEIFS 236

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 89/209 (42%), Gaps = 49/209 (23%)
Query: 329 MESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE------ELRILQRINH 376
           ME T +++  + +G   Y    +G        +AVK +KED  E      E  +++ I H
Sbjct: 8   MERT-DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH 66
Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALD 436
            NLV+L+GV +  +   +++ E+   G+L  +L            ++++        A  
Sbjct: 67  PNLVQLLGVCT-REPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYM--------ATQ 117
Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMP--------- 487
           +++ ++Y+    + + +HRD+   N  +      K+A+F L+   T D            
Sbjct: 118 ISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPI 174
Query: 488 ---------------KFDVFAFGVVLLEL 501
                          K DV+AFGV+L E+
Sbjct: 175 KWTAPESLAYNKFSIKSDVWAFGVLLWEI 203

>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 82/209 (39%), Gaps = 51/209 (24%)
Query: 338 HYSIGKSVYRATIDGKV-------LAVKKIKE--------DVTEELRILQRINHANLVKL 382
           H + G+ VY   + G         +AVK + E        D   E  I+ + NH N+V+ 
Sbjct: 55  HGAFGE-VYEGQVSGMPNDPSPLQVAVKTLPEVYSEQDELDFLMEALIISKFNHQNIVRC 113
Query: 383 MGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQ 442
           +GVS  S   RF++ E    G L  +L            +  L     L VA D+A G Q
Sbjct: 114 IGVSLQSL-PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDL---LHVARDIACGCQ 169
Query: 443 YMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSLA--------------APATNDV 485
           Y+ E+     +HRDI   N  L        AKI +F +A              A      
Sbjct: 170 YLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKW 226
Query: 486 MP-----------KFDVFAFGVVLLELLS 503
           MP           K D ++FGV+L E+ S
Sbjct: 227 MPPEAFMEGIFTSKTDTWSFGVLLWEIFS 255

>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr) Kinase Domain Length = 316

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 43/195 (22%)
Query: 349 TIDGKVLAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEY 399
           T   + +AVK +KE  T         EL+IL  I +H N+V L+G  +   G   ++ E+
Sbjct: 54  TATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEF 113
Query: 400 AENGSLDKWLHPXXXXXXXXXXVI------FLTWSQRLRVALDVANGLQYMHEHAQPSIV 453
            + G+L  +L                    FLT    +  +  VA G++++   A    +
Sbjct: 114 CKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFL---ASRKCI 170
Query: 454 HRDIRTNNIQLDSRFKAKIANFSLAAPATNDV---------MP----------------K 488
           HRD+   NI L  +   KI +F LA     D          +P                +
Sbjct: 171 HRDLAARNILLSEKNVVKICDFGLARDIYKDPDXVRKGDARLPLKWMAPETIFDRVYTIQ 230
Query: 489 FDVFAFGVVLLELLS 503
            DV++FGV+L E+ S
Sbjct: 231 SDVWSFGVLLWEIFS 245

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 49/209 (23%)
Query: 329 MESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE------ELRILQRINH 376
           ME T +++  + +G   Y    +G        +AVK +KED  E      E  +++ I H
Sbjct: 10  MERT-DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH 68
Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALD 436
            NLV+L+GV +  +   +++ E+   G+L  +L            ++++        A  
Sbjct: 69  PNLVQLLGVCT-REPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYM--------ATQ 119
Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------------ 478
           +++ ++Y+    + + +HRD+   N  +      K+A+F L+                  
Sbjct: 120 ISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPI 176
Query: 479 ---AP---ATNDVMPKFDVFAFGVVLLEL 501
              AP   A N    K DV+AFGV+L E+
Sbjct: 177 KWTAPESLAYNKFSIKSDVWAFGVLLWEI 205

>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridyl-Pyrimidine Benzimidazole Inhibitor Length = 314

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 79/197 (40%), Gaps = 47/197 (23%)
Query: 349 TIDGKVLAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEY 399
           T   + +AVK +KE  T         EL+IL  I +H N+V L+G  +   G   ++ E+
Sbjct: 45  TATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVITEF 104
Query: 400 AENGSLDKWLHPXXXXXXXXXXVI------FLTWSQRLRVALDVANGLQYMHEHAQPSIV 453
            + G+L  +L                    FLT    +  +  VA G++++   A    +
Sbjct: 105 CKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFL---ASRKCI 161
Query: 454 HRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKF------------------------ 489
           HRD+   NI L  +   KI +F LA     D  P +                        
Sbjct: 162 HRDLAARNILLSEKNVVKICDFGLARDIYKD--PDYVRKGDARLPLKWMAPETIFDRVYT 219
Query: 490 ---DVFAFGVVLLELLS 503
              DV++FGV+L E+ S
Sbjct: 220 IQSDVWSFGVLLWEIFS 236

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 88/205 (42%), Gaps = 59/205 (28%)
Query: 343 KSVYRATIDGKVLAVKKI-------KEDVTEELRILQRINHANLVKLMGVSSDSQGNRFL 395
           K  +R T  G+V+ +K++       +    +E+++++ + H N++K +GV    +   F+
Sbjct: 28  KVTHRET--GEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFI 85
Query: 396 VYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHR 455
             EY + G+L   +                 WSQR+  A D+A+G+ Y+H     +I+HR
Sbjct: 86  T-EYIKGGTLRGIIKSMDSQ---------YPWSQRVSFAKDIASGMAYLHSM---NIIHR 132
Query: 456 DIRTNNIQLDSRFKAKIANFSLAAPATND---------------------------VMP- 487
           D+ ++N  +       +A+F LA    ++                           + P 
Sbjct: 133 DLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPE 192
Query: 488 ---------KFDVFAFGVVLLELLS 503
                    K DVF+FG+VL E++ 
Sbjct: 193 MINGRSYDEKVDVFSFGIVLCEIIG 217

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 49/209 (23%)
Query: 329 MESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE------ELRILQRINH 376
           ME T +++  + +G   Y    +G        +AVK +KED  E      E  +++ I H
Sbjct: 15  MERT-DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH 73
Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALD 436
            NLV+L+GV +  +   +++ E+   G+L  +L            ++++        A  
Sbjct: 74  PNLVQLLGVCT-REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYM--------ATQ 124
Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------------ 478
           +++ ++Y+    + + +HRD+   N  +      K+A+F L+                  
Sbjct: 125 ISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPI 181
Query: 479 ---AP---ATNDVMPKFDVFAFGVVLLEL 501
              AP   A N    K DV+AFGV+L E+
Sbjct: 182 KWTAPESLAYNKFSIKSDVWAFGVLLWEI 210

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 49/209 (23%)
Query: 329 MESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE------ELRILQRINH 376
           ME T +++  + +G   Y    +G        +AVK +KED  E      E  +++ I H
Sbjct: 10  MERT-DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH 68
Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALD 436
            NLV+L+GV +  +   +++ E+   G+L  +L            ++++        A  
Sbjct: 69  PNLVQLLGVCT-REPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYM--------ATQ 119
Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------------ 478
           +++ ++Y+    + + +HRD+   N  +      K+A+F L+                  
Sbjct: 120 ISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPI 176
Query: 479 ---AP---ATNDVMPKFDVFAFGVVLLEL 501
              AP   A N    K DV+AFGV+L E+
Sbjct: 177 KWTAPESLAYNKFSIKSDVWAFGVLLWEI 205

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 49/209 (23%)
Query: 329 MESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE------ELRILQRINH 376
           ME T +++  + +G   Y    +G        +AVK +KED  E      E  +++ I H
Sbjct: 10  MERT-DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH 68
Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALD 436
            NLV+L+GV +  +   +++ E+   G+L  +L            ++++        A  
Sbjct: 69  PNLVQLLGVCT-REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYM--------ATQ 119
Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------------ 478
           +++ ++Y+    + + +HRD+   N  +      K+A+F L+                  
Sbjct: 120 ISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPI 176
Query: 479 ---AP---ATNDVMPKFDVFAFGVVLLEL 501
              AP   A N    K DV+AFGV+L E+
Sbjct: 177 KWTAPESLAYNKFSIKSDVWAFGVLLWEI 205

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 49/209 (23%)
Query: 329 MESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE------ELRILQRINH 376
           ME T +++  + +G   Y    +G        +AVK +KED  E      E  +++ I H
Sbjct: 10  MERT-DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH 68
Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALD 436
            NLV+L+GV +  +   +++ E+   G+L  +L            ++++        A  
Sbjct: 69  PNLVQLLGVCT-REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYM--------ATQ 119
Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------------ 478
           +++ ++Y+    + + +HRD+   N  +      K+A+F L+                  
Sbjct: 120 ISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPI 176
Query: 479 ---AP---ATNDVMPKFDVFAFGVVLLEL 501
              AP   A N    K DV+AFGV+L E+
Sbjct: 177 KWTAPESLAYNKFSIKSDVWAFGVLLWEI 205

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 49/209 (23%)
Query: 329 MESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE------ELRILQRINH 376
           ME T +++  + +G   Y    +G        +AVK +KED  E      E  +++ I H
Sbjct: 11  MERT-DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH 69
Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALD 436
            NLV+L+GV +  +   +++ E+   G+L  +L            ++++        A  
Sbjct: 70  PNLVQLLGVCT-REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYM--------ATQ 120
Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------APAT----- 482
           +++ ++Y+    + + +HRD+   N  +      K+A+F L+         APA      
Sbjct: 121 ISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGAKFPI 177
Query: 483 ----------NDVMPKFDVFAFGVVLLEL 501
                     N    K DV+AFGV+L E+
Sbjct: 178 KWTAPESLAYNKFSIKSDVWAFGVLLWEI 206

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 44/190 (23%)
Query: 345 VYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVY 397
           V+  T +G   +A+K +K      E   +E ++++++ H  LV+L  V S+     ++V 
Sbjct: 283 VWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP--IYIVT 340
Query: 398 EYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
           EY   GSL  +L              +L   Q + +A  +A+G+ Y+      + VHRD+
Sbjct: 341 EYMSKGSLLDFLKGETGK--------YLRLPQLVDMAAQIASGMAYVERM---NYVHRDL 389
Query: 458 RTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVFA 493
           R  NI +      K+A+F LA                     AP          K DV++
Sbjct: 390 RAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 449
Query: 494 FGVVLLELLS 503
           FG++L EL +
Sbjct: 450 FGILLTELTT 459

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 51/197 (25%)
Query: 354 VLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
           ++AVK +KE        D   E  ++   ++ N+VKL+GV +  +    L++EY   G L
Sbjct: 79  MVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGK-PMCLLFEYMAYGDL 137
Query: 406 DKWLH---PXXXXXXXXXXVIF-----------LTWSQRLRVALDVANGLQYMHEHAQPS 451
           +++L    P          +             L+ +++L +A  VA G+ Y+ E     
Sbjct: 138 NEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---K 194
Query: 452 IVHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP--------------- 487
            VHRD+ T N  +      KIA+F L+             ND +P               
Sbjct: 195 FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYT 254
Query: 488 -KFDVFAFGVVLLELLS 503
            + DV+A+GVVL E+ S
Sbjct: 255 TESDVWAYGVVLWEIFS 271

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 49/209 (23%)
Query: 329 MESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE------ELRILQRINH 376
           ME T +++  + +G   Y    +G        +AVK +KED  E      E  +++ I H
Sbjct: 15  MERT-DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH 73
Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALD 436
            NLV+L+GV +  +   +++ E+   G+L  +L            ++++        A  
Sbjct: 74  PNLVQLLGVCT-REPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYM--------ATQ 124
Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------------ 478
           +++ ++Y+    + + +HRD+   N  +      K+A+F L+                  
Sbjct: 125 ISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPI 181
Query: 479 ---AP---ATNDVMPKFDVFAFGVVLLEL 501
              AP   A N    K DV+AFGV+L E+
Sbjct: 182 KWTAPESLAYNKFSIKSDVWAFGVLLWEI 210

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 49/209 (23%)
Query: 329 MESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE------ELRILQRINH 376
           ME T +++  + +G   Y    +G        +AVK +KED  E      E  +++ I H
Sbjct: 11  MERT-DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH 69
Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALD 436
            NLV+L+GV +  +   +++ E+   G+L  +L            ++++        A  
Sbjct: 70  PNLVQLLGVCT-REPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYM--------ATQ 120
Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------------ 478
           +++ ++Y+    + + +HRD+   N  +      K+A+F L+                  
Sbjct: 121 ISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPI 177
Query: 479 ---AP---ATNDVMPKFDVFAFGVVLLEL 501
              AP   A N    K DV+AFGV+L E+
Sbjct: 178 KWTAPESLAYNKFSIKSDVWAFGVLLWEI 206

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 49/209 (23%)
Query: 329 MESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE------ELRILQRINH 376
           ME T +++  + +G   Y    +G        +AVK +KED  E      E  +++ I H
Sbjct: 15  MERT-DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH 73
Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALD 436
            NLV+L+GV +  +   +++ E+   G+L  +L            ++++        A  
Sbjct: 74  PNLVQLLGVCT-REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYM--------ATQ 124
Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------------ 478
           +++ ++Y+    + + +HRD+   N  +      K+A+F L+                  
Sbjct: 125 ISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPI 181
Query: 479 ---AP---ATNDVMPKFDVFAFGVVLLEL 501
              AP   A N    K DV+AFGV+L E+
Sbjct: 182 KWTAPESLAYNKFSIKSDVWAFGVLLWEI 210

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 49/209 (23%)
Query: 329 MESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE------ELRILQRINH 376
           ME T +++  + +G   Y    +G        +AVK +KED  E      E  +++ I H
Sbjct: 15  MERT-DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH 73
Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALD 436
            NLV+L+GV +  +   +++ E+   G+L  +L            ++++        A  
Sbjct: 74  PNLVQLLGVCT-REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYM--------ATQ 124
Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------------ 478
           +++ ++Y+    + + +HRD+   N  +      K+A+F L+                  
Sbjct: 125 ISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPI 181
Query: 479 ---AP---ATNDVMPKFDVFAFGVVLLEL 501
              AP   A N    K DV+AFGV+L E+
Sbjct: 182 KWTAPESLAYNKFSIKSDVWAFGVLLWEI 210

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 49/209 (23%)
Query: 329 MESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE------ELRILQRINH 376
           ME T +++  + +G   Y    +G        +AVK +KED  E      E  +++ I H
Sbjct: 12  MERT-DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH 70
Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALD 436
            NLV+L+GV +  +   +++ E+   G+L  +L            ++++        A  
Sbjct: 71  PNLVQLLGVCT-REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYM--------ATQ 121
Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------APAT----- 482
           +++ ++Y+    + + +HRD+   N  +      K+A+F L+         APA      
Sbjct: 122 ISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGAKFPI 178
Query: 483 ----------NDVMPKFDVFAFGVVLLEL 501
                     N    K DV+AFGV+L E+
Sbjct: 179 KWTAPESLAYNKFSIKSDVWAFGVLLWEI 207

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   DS    +L+ EYA  G++ + L          
Sbjct: 51  VEHQLRREVEIQSHLRHPNILRLYGYFHDST-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 108
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 109 RTATYIT---------ELANALSYCH---SKKVIHRDIKPENLLLGSAGELKIADFGWSV 156
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 157 HAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 49/209 (23%)
Query: 329 MESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE------ELRILQRINH 376
           ME T +++  + +G   Y    +G        +AVK +KED  E      E  +++ I H
Sbjct: 14  MERT-DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH 72
Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALD 436
            NLV+L+GV +  +   +++ E+   G+L  +L            ++++        A  
Sbjct: 73  PNLVQLLGVCT-REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYM--------ATQ 123
Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------------ 478
           +++ ++Y+    + + +HRD+   N  +      K+A+F L+                  
Sbjct: 124 ISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPI 180
Query: 479 ---AP---ATNDVMPKFDVFAFGVVLLEL 501
              AP   A N    K DV+AFGV+L E+
Sbjct: 181 KWTAPESLAYNKFSIKSDVWAFGVLLWEI 209

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 49/209 (23%)
Query: 329 MESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE------ELRILQRINH 376
           ME T +++  + +G   Y    +G        +AVK +KED  E      E  +++ I H
Sbjct: 15  MERT-DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH 73
Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALD 436
            NLV+L+GV +  +   +++ E+   G+L  +L            ++++        A  
Sbjct: 74  PNLVQLLGVCT-REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYM--------ATQ 124
Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------------ 478
           +++ ++Y+    + + +HRD+   N  +      K+A+F L+                  
Sbjct: 125 ISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPI 181
Query: 479 ---AP---ATNDVMPKFDVFAFGVVLLEL 501
              AP   A N    K DV+AFGV+L E+
Sbjct: 182 KWTAPESLAYNKFSIKSDVWAFGVLLWEI 210

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 44/188 (23%)
Query: 345 VYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVY 397
           V+  T +G   +A+K +K      E   +E ++++++ H  LV+L  V S+     ++V 
Sbjct: 200 VWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP--IYIVT 257
Query: 398 EYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
           EY   GSL  +L              +L   Q + +A  +A+G+ Y+      + VHRD+
Sbjct: 258 EYMSKGSLLDFLKGETGK--------YLRLPQLVDMAAQIASGMAYVERM---NYVHRDL 306
Query: 458 RTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVFA 493
           R  NI +      K+A+F LA                     AP          K DV++
Sbjct: 307 RAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 366
Query: 494 FGVVLLEL 501
           FG++L EL
Sbjct: 367 FGILLTEL 374

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 44/188 (23%)
Query: 345 VYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVY 397
           V+  T +G   +A+K +K      E   +E ++++++ H  LV+L  V S+     ++V 
Sbjct: 200 VWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP--IYIVT 257
Query: 398 EYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
           EY   GSL  +L              +L   Q + +A  +A+G+ Y+      + VHRD+
Sbjct: 258 EYMSKGSLLDFLKGETGK--------YLRLPQLVDMAAQIASGMAYVERM---NYVHRDL 306
Query: 458 RTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVFA 493
           R  NI +      K+A+F LA                     AP          K DV++
Sbjct: 307 RAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 366
Query: 494 FGVVLLEL 501
           FG++L EL
Sbjct: 367 FGILLTEL 374

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 44/189 (23%)
Query: 344 SVYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV 396
            V+  T +G   +A+K +K      E   +E ++++++ H  LV+L  V S+     ++V
Sbjct: 33  EVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE--PIYIV 90
Query: 397 YEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            EY   GSL  +L              +L   Q + +A  +A+G+ Y+      + VHRD
Sbjct: 91  IEYMSKGSLLDFLKGEMGK--------YLRLPQLVDMAAQIASGMAYVERM---NYVHRD 139
Query: 457 IRTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVF 492
           +R  NI +      K+A+F LA                     AP          K DV+
Sbjct: 140 LRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVW 199
Query: 493 AFGVVLLEL 501
           +FG++L EL
Sbjct: 200 SFGILLTEL 208

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 44/189 (23%)
Query: 344 SVYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV 396
            V+  T +G   +A+K +K      E   +E ++++++ H  LV+L  V S+     ++V
Sbjct: 33  EVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE--PIYIV 90
Query: 397 YEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            EY   GSL  +L              +L   Q + +A  +A+G+ Y+      + VHRD
Sbjct: 91  IEYMSKGSLLDFLKGEMGK--------YLRLPQLVDMAAQIASGMAYVERM---NYVHRD 139
Query: 457 IRTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVF 492
           +R  NI +      K+A+F LA                     AP          K DV+
Sbjct: 140 LRAANILVGENLVCKVADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIKSDVW 199
Query: 493 AFGVVLLEL 501
           +FG++L EL
Sbjct: 200 SFGILLTEL 208

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 49/209 (23%)
Query: 329 MESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE------ELRILQRINH 376
           ME T +++  + +G   Y    +G        +AVK +KED  E      E  +++ I H
Sbjct: 12  MERT-DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH 70
Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALD 436
            NLV+L+GV +  +   +++ E+   G+L  +L            ++++        A  
Sbjct: 71  PNLVQLLGVCT-REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYM--------ATQ 121
Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------------ 478
           +++ ++Y+    + + +HRD+   N  +      K+A+F L+                  
Sbjct: 122 ISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPI 178
Query: 479 ---AP---ATNDVMPKFDVFAFGVVLLEL 501
              AP   A N    K DV+AFGV+L E+
Sbjct: 179 KWTAPESLAYNKFSIKSDVWAFGVLLWEI 207

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 49/209 (23%)
Query: 329 MESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE------ELRILQRINH 376
           ME T +++  + +G   Y    +G        +AVK +KED  E      E  +++ I H
Sbjct: 10  MERT-DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH 68
Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALD 436
            NLV+L+GV +  +   +++ E+   G+L  +L            ++++        A  
Sbjct: 69  PNLVQLLGVCT-REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYM--------ATQ 119
Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------------ 478
           +++ ++Y+    + + +HRD+   N  +      K+A+F L+                  
Sbjct: 120 ISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPI 176
Query: 479 ---AP---ATNDVMPKFDVFAFGVVLLEL 501
              AP   A N    K DV+AFGV+L E+
Sbjct: 177 KWTAPESLAYNKFSIKSDVWAFGVLLWEI 205

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 49/209 (23%)
Query: 329 MESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE------ELRILQRINH 376
           ME T +++  + +G   Y    +G        +AVK +KED  E      E  +++ I H
Sbjct: 12  MERT-DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH 70
Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALD 436
            NLV+L+GV +  +   +++ E+   G+L  +L            ++++        A  
Sbjct: 71  PNLVQLLGVCT-REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYM--------ATQ 121
Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------------ 478
           +++ ++Y+    + + +HRD+   N  +      K+A+F L+                  
Sbjct: 122 ISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPI 178
Query: 479 ---AP---ATNDVMPKFDVFAFGVVLLEL 501
              AP   A N    K DV+AFGV+L E+
Sbjct: 179 KWTAPESLAYNKFSIKSDVWAFGVLLWEI 207

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 49/209 (23%)
Query: 329 MESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE------ELRILQRINH 376
           ME T +++  + +G   Y    +G        +AVK +KED  E      E  +++ I H
Sbjct: 10  MERT-DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH 68
Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALD 436
            NLV+L+GV +  +   +++ E+   G+L  +L            ++++        A  
Sbjct: 69  PNLVQLLGVCT-REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYM--------ATQ 119
Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------------ 478
           +++ ++Y+    + + +HRD+   N  +      K+A+F L+                  
Sbjct: 120 ISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPI 176
Query: 479 ---AP---ATNDVMPKFDVFAFGVVLLEL 501
              AP   A N    K DV+AFGV+L E+
Sbjct: 177 KWTAPESLAYNKFSIKSDVWAFGVLLWEI 205

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 44/189 (23%)
Query: 344 SVYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV 396
            V+  T +G   +A+K +K      E   +E ++++++ H  LV+L  V S+     ++V
Sbjct: 33  EVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE--PIYIV 90
Query: 397 YEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            EY   GSL  +L              +L   Q + +A  +A+G+ Y+      + VHRD
Sbjct: 91  CEYMSKGSLLDFLKGEMGK--------YLRLPQLVDMAAQIASGMAYVERM---NYVHRD 139
Query: 457 IRTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVF 492
           +R  NI +      K+A+F LA                     AP          K DV+
Sbjct: 140 LRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVW 199
Query: 493 AFGVVLLEL 501
           +FG++L EL
Sbjct: 200 SFGILLTEL 208

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 44/189 (23%)
Query: 344 SVYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV 396
            V+  T +G   +A+K +K      E   +E ++++++ H  LV+L  V S+     ++V
Sbjct: 22  EVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE--PIYIV 79
Query: 397 YEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            EY   GSL  +L              +L   Q + +A  +A+G+ Y+      + VHRD
Sbjct: 80  TEYMSKGSLLDFLKGEMGK--------YLRLPQLVDMAAQIASGMAYVERM---NYVHRD 128
Query: 457 IRTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVF 492
           +R  NI +      K+A+F LA                     AP          K DV+
Sbjct: 129 LRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVW 188
Query: 493 AFGVVLLEL 501
           +FG++L EL
Sbjct: 189 SFGILLTEL 197

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 49/209 (23%)
Query: 329 MESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE------ELRILQRINH 376
           ME T +++  + +G   Y    +G        +AVK +KED  E      E  +++ I H
Sbjct: 23  MERT-DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH 81
Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALD 436
            NLV+L+GV +  +   +++ E+   G+L  +L            ++++        A  
Sbjct: 82  PNLVQLLGVCT-REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYM--------ATQ 132
Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------------ 478
           +++ ++Y+    + + +HRD+   N  +      K+A+F L+                  
Sbjct: 133 ISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPI 189
Query: 479 ---AP---ATNDVMPKFDVFAFGVVLLEL 501
              AP   A N    K DV+AFGV+L E+
Sbjct: 190 KWTAPESLAYNKFSIKSDVWAFGVLLWEI 218

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 40/178 (22%)
Query: 353 KVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPX 412
           ++  +++++  + E L +++ +NH N++ L+G+    +G   ++  Y  +G L +++   
Sbjct: 59  RITEMQQVEAFLREGL-LMRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSP 117
Query: 413 XXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI 472
                    + F          L VA G++Y+   A+   VHRD+   N  LD  F  K+
Sbjct: 118 QRNPTVKDLISF---------GLQVARGMEYL---AEQKFVHRDLAARNCMLDESFTVKV 165
Query: 473 ANFSLA---------------------------APATNDVMPKFDVFAFGVVLLELLS 503
           A+F LA                           +  T     K DV++FGV+L ELL+
Sbjct: 166 ADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLT 223

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 21/132 (15%)
Query: 355 LAVKKIKEDVTEELR--------ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           +A+K +K   TE  R        I+ +  H N+++L GV ++S     L  E+ ENG+LD
Sbjct: 45  VAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIRLEGVVTNSMPVMILT-EFMENGALD 103
Query: 407 KWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS 466
            +L            V  L           +A+G++Y+   A+ S VHRD+   NI ++S
Sbjct: 104 SFLRLNDGQFTVIQLVGMLR---------GIASGMRYL---AEMSYVHRDLAARNILVNS 151
Query: 467 RFKAKIANFSLA 478
               K+++F L+
Sbjct: 152 NLVCKVSDFGLS 163

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 42/177 (23%)
Query: 355 LAVKKIKEDVTE------ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW 408
           +AVK +KED  E      E  +++ I H NLV+L+GV +  +   +++ E+   G+L  +
Sbjct: 39  VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REPPFYIITEFMTYGNLLDY 97
Query: 409 LHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF 468
           L            ++++        A  +++ ++Y+    + + +HRD+   N  +    
Sbjct: 98  LRECNRQEVSAVVLLYM--------ATQISSAMEYLE---KKNFIHRDLAARNCLVGENH 146
Query: 469 KAKIANFSLAAPATNDVMP------------------------KFDVFAFGVVLLEL 501
             K+A+F L+   T D                           K DV+AFGV+L E+
Sbjct: 147 LVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEI 203

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 44/189 (23%)
Query: 344 SVYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV 396
            V+  T +G   +A+K +K      E   +E ++++++ H  LV+L  V S+     ++V
Sbjct: 33  EVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE--PIYIV 90
Query: 397 YEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            EY   GSL  +L              +L   Q + +A  +A+G+ Y+      + VHRD
Sbjct: 91  TEYMSKGSLLDFLKGEMGK--------YLRLPQLVDMAAQIASGMAYVERM---NYVHRD 139
Query: 457 IRTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVF 492
           +R  NI +      K+A+F LA                     AP          K DV+
Sbjct: 140 LRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVW 199
Query: 493 AFGVVLLEL 501
           +FG++L EL
Sbjct: 200 SFGILLTEL 208

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 44/189 (23%)
Query: 344 SVYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV 396
            V+  T +G   +A+K +K      E   +E ++++++ H  LV+L  V S+     ++V
Sbjct: 26  EVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE--PIYIV 83
Query: 397 YEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            EY   GSL  +L              +L   Q + +A  +A+G+ Y+      + VHRD
Sbjct: 84  TEYMSKGSLLDFLKGETGK--------YLRLPQLVDMAAQIASGMAYVERM---NYVHRD 132
Query: 457 IRTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVF 492
           +R  NI +      K+A+F LA                     AP          K DV+
Sbjct: 133 LRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVW 192
Query: 493 AFGVVLLEL 501
           +FG++L EL
Sbjct: 193 SFGILLTEL 201

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 44/189 (23%)
Query: 344 SVYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV 396
            V+  T +G   +A+K +K      E   +E ++++++ H  LV+L  V S+     ++V
Sbjct: 24  EVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE--PIYIV 81
Query: 397 YEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            EY   GSL  +L              +L   Q + +A  +A+G+ Y+      + VHRD
Sbjct: 82  TEYMSKGSLLDFLKGEMGK--------YLRLPQLVDMAAQIASGMAYVERM---NYVHRD 130
Query: 457 IRTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVF 492
           +R  NI +      K+A+F LA                     AP          K DV+
Sbjct: 131 LRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVW 190
Query: 493 AFGVVLLEL 501
           +FG++L EL
Sbjct: 191 SFGILLTEL 199

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 21/132 (15%)
Query: 355 LAVKKIKEDVTEELR--------ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           +A+K +K   TE  R        I+ +  H N+++L GV ++S     L  E+ ENG+LD
Sbjct: 47  VAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIRLEGVVTNSMPVMILT-EFMENGALD 105
Query: 407 KWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS 466
            +L            VI L    R      +A+G++Y+   A+ S VHRD+   NI ++S
Sbjct: 106 SFLR----LNDGQFTVIQLVGMLR-----GIASGMRYL---AEMSYVHRDLAARNILVNS 153
Query: 467 RFKAKIANFSLA 478
               K+++F L+
Sbjct: 154 NLVCKVSDFGLS 165

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 33/168 (19%)
Query: 353 KVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPX 412
           KV   +K + D   E  I+ + +H N+V L GV +  +    +V E+ ENG+LD +L   
Sbjct: 80  KVGYTEKQRRDFLCEASIMGQFDHPNVVHLEGVVTRGK-PVMIVIEFMENGALDAFLRKH 138
Query: 413 XXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI 472
                        T  Q + +   +A G++Y+   A    VHRD+   NI ++S    K+
Sbjct: 139 DGQ---------FTVIQLVGMLRGIAAGMRYL---ADMGYVHRDLAARNILVNSNLVCKV 186
Query: 473 ANFSLAAPATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLW 520
           ++F L+    +D                     +A  TT  GK  V W
Sbjct: 187 SDFGLSRVIEDD--------------------PEAVYTTTGGKIPVRW 214

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 77  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 134
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 135 RTATYIT---------ELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSV 182
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 183 HAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 229

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 44/188 (23%)
Query: 345 VYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVY 397
           V+  T +G   +A+K +K      E   +E ++++++ H  LV+L  V S+     ++V 
Sbjct: 200 VWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP--IYIVG 257
Query: 398 EYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
           EY   GSL  +L              +L   Q + +A  +A+G+ Y+      + VHRD+
Sbjct: 258 EYMSKGSLLDFLKGETGK--------YLRLPQLVDMAAQIASGMAYVERM---NYVHRDL 306
Query: 458 RTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVFA 493
           R  NI +      K+A+F LA                     AP          K DV++
Sbjct: 307 RAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 366
Query: 494 FGVVLLEL 501
           FG++L EL
Sbjct: 367 FGILLTEL 374

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 51  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 108
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 109 RTATYIT---------ELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSV 156
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 157 HAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 77  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 134
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 135 RTATYIT---------ELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSV 182
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 183 HAPSSRRDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 229

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 29/144 (20%)
Query: 352 GKVLAVKK---------IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAEN 402
           G+++A+KK         +K+    E+++L+++ H NLV L+ V    +   +LV+E+ ++
Sbjct: 50  GRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKK-RWYLVFEFVDH 108
Query: 403 GSLDKW-LHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNN 461
             LD   L P           +F            + NG+ + H H   +I+HRDI+  N
Sbjct: 109 TILDDLELFPNGLDYQVVQKYLF-----------QIINGIGFCHSH---NIIHRDIKPEN 154
Query: 462 IQLDSRFKAKIANF----SLAAPA 481
           I +      K+ +F    +LAAP 
Sbjct: 155 ILVSQSGVVKLCDFGFARTLAAPG 178

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 51  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 108
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 109 RTATYIT---------ELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSV 156
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 157 HAPSSRRTELCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 56  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 113
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 114 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV 161
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 162 HAPSSRRTTLCGTLDYLPPEXIEGRXHDEKVDLWSLGVLCYEFLVGK 208

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 56  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 113
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 114 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV 161
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 162 HAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 208

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 54  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 111
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 112 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV 159
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 160 HAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 206

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 68  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 125
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 126 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV 173
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 174 HAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 220

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 54  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 111
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 112 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV 159
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 160 HAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 206

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 106/256 (41%), Gaps = 71/256 (27%)
Query: 306 QNKLLPGVSGY----------------LGKPIVYEI--EVIMESTMNLSEHYSIGKSVYR 347
           Q+ +L GVS Y                LGKP+      +V+M      +E   I K   +
Sbjct: 12  QDPMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGAFGQVVM------AEAVGIDKDKPK 65
Query: 348 ATIDGKVLAVKKIKEDVTE--------ELRILQRIN-HANLVKLMGVSSDSQGNRFLVYE 398
             +    +AVK +K+D TE        E+ +++ I  H N++ L+G  +   G  +++ E
Sbjct: 66  EAV---TVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT-QDGPLYVIVE 121
Query: 399 YAENGSLDKWLHPXXXXXXXXXXVI------FLTWSQRLRVALDVANGLQYMHEHAQPSI 452
           YA  G+L ++L             I       +T+   +     +A G++Y+   A    
Sbjct: 122 YASKGNLREYLRARRPPGMEXSYDINRVPEEQMTFKDLVSCTYQLARGMEYL---ASQKC 178
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP---------------- 487
           +HRD+   N+ +      KIA+F LA            TN  +P                
Sbjct: 179 IHRDLAARNVLVTENNVMKIADFGLARDINNIDXXKKTTNGRLPVKWMAPEALFDRVYTH 238
Query: 488 KFDVFAFGVVLLELLS 503
           + DV++FGV++ E+ +
Sbjct: 239 QSDVWSFGVLMWEIFT 254

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 55  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 112
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 113 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV 160
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 161 HAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 207

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 56  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 113
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 114 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV 161
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 162 HAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 208

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 50  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 107
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 108 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV 155
Query: 478 AAPA--------TNDVMP-----------KFDVFAFGVVLLELLSGK 505
            AP+        T D +P           K D+++ GV+  E L GK
Sbjct: 156 HAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 202

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 28/165 (16%)
Query: 329 MESTMNLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQR 373
           + S  N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ 
Sbjct: 3   LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 62
Query: 374 INHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRV 433
           +NH N+VKL+ V   ++   +LV+E+         LH           +  +        
Sbjct: 63  LNHPNIVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSY 112
Query: 434 ALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
              +  GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 113 LFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 154

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 51  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 108
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 109 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV 156
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 157 HAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 53  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 110
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 111 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV 158
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 159 HAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 205

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 45/201 (22%)
Query: 340 SIGKSVY-RATIDGKVLAVKKI---------KEDVTEELRILQRINHANLVKLMGVSSDS 389
           S GK++  ++T DG+   +K+I         +E+   E+ +L  + H N+V+    S + 
Sbjct: 36  SFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRE-SFEE 94
Query: 390 QGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQ 449
            G+ ++V +Y E G L K ++            +     Q L   + +   L+++H+   
Sbjct: 95  NGSLYIVMDYCEGGDLFKRINAQKG--------VLFQEDQILDWFVQICLALKHVHDR-- 144
Query: 450 PSIVHRDIRTNNIQLDSRFKAKIANFSLA--------------------APATNDVMP-- 487
             I+HRDI++ NI L      ++ +F +A                    +P   +  P  
Sbjct: 145 -KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYN 203
Query: 488 -KFDVFAFGVVLLELLSGKKA 507
            K D++A G VL EL + K A
Sbjct: 204 NKSDIWALGCVLYELCTLKHA 224

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 37/179 (20%)
Query: 315 GYLGKPIVYE----IEVIMESTMNLSEHYSIGKSVYRA--TIDGKVLAVKKIKEDV---- 364
           G LG P   E    +E I E T  +         VY+A   + G+V+A+KKI+ D     
Sbjct: 1   GPLGSPEFMENFQKVEKIGEGTYGV---------VYKARNKLTGEVVALKKIRLDTETEG 51
Query: 365 -----TEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
                  E+ +L+ +NH N+VKL+ V   ++   +LV+E+         LH         
Sbjct: 52  VPSTAIREISLLKELNHPNIVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDA 101
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             +  +           +  GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 102 SALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 157

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 28/163 (17%)
Query: 331 STMNLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRIN 375
           S  N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +N
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N+VKL+ V   ++   +LV+E+         LH           +  +          
Sbjct: 64  HPNIVKLLDVIH-TENKLYLVFEF---------LHQDLKTFMDASALTGIPLPLIKSYLF 113
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            +  GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 114 QLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 153

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 51  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 108
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 109 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV 156
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 157 HAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 28/165 (16%)
Query: 329 MESTMNLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQR 373
           + S  N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ 
Sbjct: 2   LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 61
Query: 374 INHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRV 433
           +NH N+VKL+ V   ++   +LV+E+         LH           +  +        
Sbjct: 62  LNHPNIVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSY 111
Query: 434 ALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
              +  GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 112 LFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 153

>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain Length = 316

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 44/189 (23%)
Query: 355 LAVKKIKEDVTE--------ELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
           +AVK +K+D TE        E+ +++ I  H N++ L+G  +   G  +++ EYA  G+L
Sbjct: 62  VAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT-QDGPLYVIVEYASKGNL 120
Query: 406 DKWLHPXXXXXXXXXXVI------FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
            ++L             I       +T+   +     +A G++Y+   A    +HRD+  
Sbjct: 121 REYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAA 177
Query: 460 NNIQLDSRFKAKIANFSLA---------APATNDVMP----------------KFDVFAF 494
            N+ +      KIA+F LA            TN  +P                + DV++F
Sbjct: 178 RNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSF 237
Query: 495 GVVLLELLS 503
           GV++ E+ +
Sbjct: 238 GVLMWEIFT 246

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 51  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 108
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 109 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV 156
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 157 HAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 52  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 109
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 110 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV 157
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 158 HAPSSRRDTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 204

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 52  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 109
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 110 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV 157
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 158 HAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 204

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 38/196 (19%)
Query: 333 MNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGN 392
           + L+ HY   + V    I  ++L    +   V  E+  L+ + H +++KL  V + +  +
Sbjct: 25  VKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVIT-TPTD 83
Query: 393 RFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSI 452
             +V EYA     D  +               +T  +  R    +   ++Y H H    I
Sbjct: 84  IVMVIEYAGGELFDYIVEKKR-----------MTEDEGRRFFQQIICAIEYCHRH---KI 129
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSL-------------------AAPATND----VMPKF 489
           VHRD++  N+ LD     KIA+F L                   AAP   +      P+ 
Sbjct: 130 VHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGPEV 189
Query: 490 DVFAFGVVLLELLSGK 505
           DV++ G+VL  +L G+
Sbjct: 190 DVWSCGIVLYVMLVGR 205

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 105/256 (41%), Gaps = 71/256 (27%)
Query: 306 QNKLLPGVSGY----------------LGKPIVYEI--EVIMESTMNLSEHYSIGKSVYR 347
           Q+ +L GVS Y                LGKP+      +V+M      +E   I K   +
Sbjct: 12  QDPMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGAFGQVVM------AEAVGIDKDKPK 65
Query: 348 ATIDGKVLAVKKIKEDVTE--------ELRILQRIN-HANLVKLMGVSSDSQGNRFLVYE 398
             +    +AVK +K+D TE        E+ +++ I  H N++ L+G  +   G  +++ E
Sbjct: 66  EAV---TVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT-QDGPLYVIVE 121
Query: 399 YAENGSLDKWLHPXXXXXXXXXXVI------FLTWSQRLRVALDVANGLQYMHEHAQPSI 452
           YA  G+L ++L             I       +T+   +     +A G++Y+   A    
Sbjct: 122 YASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYL---ASQKC 178
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP---------------- 487
           +HRD+   N+ +      KIA+F LA            TN  +P                
Sbjct: 179 IHRDLAARNVLVTENNVMKIADFGLARDINNIDXXKKTTNGRLPVKWMAPEALFDRVYTH 238
Query: 488 KFDVFAFGVVLLELLS 503
           + DV++FGV++ E+ +
Sbjct: 239 QSDVWSFGVLMWEIFT 254

>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase In Complex With Arq 069 Length = 313

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 44/189 (23%)
Query: 355 LAVKKIKEDVTE--------ELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
           +AVK +K+D TE        E+ +++ I  H N++ L+G  +   G  +++ EYA  G+L
Sbjct: 59  VAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT-QDGPLYVIVEYASKGNL 117
Query: 406 DKWLHPXXXXXXXXXXVI------FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
            ++L             I       +T+   +     +A G++Y+   A    +HRD+  
Sbjct: 118 REYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAA 174
Query: 460 NNIQLDSRFKAKIANFSLA---------APATNDVMP----------------KFDVFAF 494
            N+ +      KIA+F LA            TN  +P                + DV++F
Sbjct: 175 RNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSF 234
Query: 495 GVVLLELLS 503
           GV++ E+ +
Sbjct: 235 GVLMWEIFT 243

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 54  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 111
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 112 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV 159
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 160 HAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 206

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 28/163 (17%)
Query: 331 STMNLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRIN 375
           S  N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +N
Sbjct: 3   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N+VKL+ V   ++   +LV+E+         LH           +  +          
Sbjct: 63  HPNIVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLF 112
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            +  GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 113 QLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 152

>pdb|3B2T|A Chain A, Structure Of Phosphotransferase Length = 311

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 44/189 (23%)
Query: 355 LAVKKIKEDVTE--------ELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
           +AVK +K+D TE        E+ +++ I  H N++ L+G  +   G  +++ EYA  G+L
Sbjct: 57  VAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT-QDGPLYVIVEYASKGNL 115
Query: 406 DKWLHPXXXXXXXXXXVI------FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
            ++L             I       +T+   +     +A G++Y+   A    +HRD+  
Sbjct: 116 REYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYL---ASQKCIHRDLTA 172
Query: 460 NNIQLDSRFKAKIANFSLA---------APATNDVMP----------------KFDVFAF 494
            N+ +      KIA+F LA            TN  +P                + DV++F
Sbjct: 173 RNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSF 232
Query: 495 GVVLLELLS 503
           GV++ E+ +
Sbjct: 233 GVLMWEIFT 241

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 28/163 (17%)
Query: 331 STMNLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRIN 375
           S  N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +N
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N+VKL+ V   ++   +LV+E+         LH           +  +          
Sbjct: 64  HPNIVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLF 113
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            +  GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 114 QLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 153

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 28/163 (17%)
Query: 331 STMNLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRIN 375
           S  N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +N
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N+VKL+ V   ++   +LV+E+         LH           +  +          
Sbjct: 61  HPNIVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLF 110
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            +  GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 111 QLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 150

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 28/163 (17%)
Query: 331 STMNLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRIN 375
           S  N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +N
Sbjct: 3   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N+VKL+ V   ++   +LV+E+         LH           +  +          
Sbjct: 63  HPNIVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLF 112
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            +  GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 113 QLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 152

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 28/163 (17%)
Query: 331 STMNLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRIN 375
           S  N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +N
Sbjct: 3   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N+VKL+ V   ++   +LV+E+         LH           +  +          
Sbjct: 63  HPNIVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLF 112
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            +  GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 113 QLLQGLAFCHSH---RVLHRDLKPENLLINTEGAIKLADFGLA 152

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 37/179 (20%)
Query: 315 GYLGKPIVYE----IEVIMESTMNLSEHYSIGKSVYRA--TIDGKVLAVKKIKEDV---- 364
           G LG P   E    +E I E T  +         VY+A   + G+V+A+KKI+ D     
Sbjct: 1   GPLGSPEFMENFQKVEKIGEGTYGV---------VYKARNKLTGEVVALKKIRLDTETEG 51
Query: 365 -----TEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
                  E+ +L+ +NH N+VKL+ V   ++   +LV+E+         LH         
Sbjct: 52  VPSTAIREISLLKELNHPNIVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDA 101
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             +  +           +  GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 102 SALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 157

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 51  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 108
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 109 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV 156
Query: 478 AAPA--------TNDVMP-----------KFDVFAFGVVLLELLSGK 505
            AP+        T D +P           K D+++ GV+  E L GK
Sbjct: 157 HAPSSRRTXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 28/163 (17%)
Query: 331 STMNLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRIN 375
           S  N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +N
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N+VKL+ V   ++   +LV+E+         LH           +  +          
Sbjct: 61  HPNIVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLF 110
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            +  GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 111 QLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 150

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 49/185 (26%)
Query: 355 LAVKKIKEDVTEELR--------ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           +A+K +K   TE+ R        I+ + +H N++ L GV + S     ++ E+ ENGSLD
Sbjct: 64  VAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKST-PVMIITEFMENGSLD 122
Query: 407 KWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS 466
            +L                T  Q + +   +A G++Y+   A  + VHRD+   NI ++S
Sbjct: 123 SFLRQNDGQ---------FTVIQLVGMLRGIAAGMKYL---ADMNYVHRDLAARNILVNS 170
Query: 467 RFKAKIANFSLAAPATNDV------------MP------------KF----DVFAFGVVL 498
               K+++F L+    +D             +P            KF    DV+++G+V+
Sbjct: 171 NLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVM 230
Query: 499 LELLS 503
            E++S
Sbjct: 231 WEVMS 235

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 28/163 (17%)
Query: 331 STMNLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRIN 375
           S  N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +N
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N+VKL+ V   ++   +LV+E+         LH           +  +          
Sbjct: 61  HPNIVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLF 110
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            +  GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 111 QLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 150

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 48  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 105
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 106 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV 153
Query: 478 AAPA--------TNDVMP-----------KFDVFAFGVVLLELLSGK 505
            AP+        T D +P           K D+++ GV+  E L GK
Sbjct: 154 HAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 200

>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild Type Fgf Receptor 2 (Fgfr2) Kinase Domain Length = 370

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 115/273 (42%), Gaps = 61/273 (22%)
Query: 273 VRILNRNGSSLESADLIPMKENSKSDRFEPKLAQNKLLPGVSGYLGKPIVYEI--EVIME 330
           VRI  R  S+ ++  L  + E    +  + +  ++KL       LGKP+      +V+M 
Sbjct: 47  VRITTRLSSTADTPMLAGVSEYELPEDPKWEFPRDKLT------LGKPLGEGCFGQVVM- 99
Query: 331 STMNLSEHYSIGKSVYRATIDGKVLAVKKIKEDVTE--------ELRILQRIN-HANLVK 381
                +E   I K   +  +    +AVK +K+D TE        E+ +++ I  H N++ 
Sbjct: 100 -----AEAVGIDKDKPKEAV---TVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIIN 151
Query: 382 LMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI------FLTWSQRLRVAL 435
           L+G  +   G  +++ EYA  G+L ++L             I       +T+   +    
Sbjct: 152 LLGACT-QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTY 210
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVM 486
            +A G++Y+   A    +HRD+   N+ +      KIA+F LA            TN  +
Sbjct: 211 QLARGMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRL 267
Query: 487 P----------------KFDVFAFGVVLLELLS 503
           P                + DV++FGV++ E+ +
Sbjct: 268 PVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFT 300

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 54  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 111
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 112 RTATYIT---------ELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSV 159
Query: 478 AAPA--------TNDVMP-----------KFDVFAFGVVLLELLSGK 505
            AP+        T D +P           K D+++ GV+  E L GK
Sbjct: 160 HAPSSRRDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 206

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 28/163 (17%)
Query: 331 STMNLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRIN 375
           S  N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +N
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N+VKL+ V   ++   +LV+E+         LH           +  +          
Sbjct: 62  HPNIVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLF 111
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            +  GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 112 QLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 151

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 54/224 (24%)
Query: 319 KPIVYEI-----EVIMESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE- 366
           KP +Y +     +  ME T +++  + +G   Y    +G        +AVK +KED  E 
Sbjct: 202 KPTIYGVSPNYDKWEMERT-DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV 260
Query: 367 -----ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXX 421
                E  +++ I H NLV+L+GV +  +   +++ E+   G+L  +L            
Sbjct: 261 EEFLKEAAVMKEIKHPNLVQLLGVCT-REPPFYIITEFMTYGNLLDYLRECNRQEVSAVV 319
Query: 422 VIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA--- 478
           ++++        A  +++ ++Y+    + + +HR++   N  +      K+A+F L+   
Sbjct: 320 LLYM--------ATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLM 368
Query: 479 ------------------AP---ATNDVMPKFDVFAFGVVLLEL 501
                             AP   A N    K DV+AFGV+L E+
Sbjct: 369 TGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEI 412

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 28/163 (17%)
Query: 331 STMNLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRIN 375
           S  N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +N
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N+VKL+ V   ++   +LV+E+         LH           +  +          
Sbjct: 62  HPNIVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLF 111
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            +  GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 112 QLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 151

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 28/163 (17%)
Query: 331 STMNLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRIN 375
           S  N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +N
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N+VKL+ V   ++   +LV+E+ +   L K++            +             
Sbjct: 64  HPNIVKLLDVIH-TENKLYLVFEHVDQ-DLKKFMDASALTGIPLPLI--------KSYLF 113
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            +  GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 114 QLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 153

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 54  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 111
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 112 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV 159
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 160 HAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 206

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 28/163 (17%)
Query: 331 STMNLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRIN 375
           S  N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +N
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N+VKL+ V   ++   +LV+E+         LH           +  +          
Sbjct: 61  HPNIVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLF 110
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            +  GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 111 QLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 150

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 54/224 (24%)
Query: 319 KPIVYEI-----EVIMESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE- 366
           KP VY +     +  ME T +++  + +G   Y    +G        +AVK +KED  E 
Sbjct: 241 KPTVYGVSPNYDKWEMERT-DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV 299
Query: 367 -----ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXX 421
                E  +++ I H NLV+L+GV +  +   +++ E+   G+L  +L            
Sbjct: 300 EEFLKEAAVMKEIKHPNLVQLLGVCT-REPPFYIITEFMTYGNLLDYLRECNRQEVNAVV 358
Query: 422 VIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA--- 478
           ++++        A  +++ ++Y+    + + +HR++   N  +      K+A+F L+   
Sbjct: 359 LLYM--------ATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLM 407
Query: 479 ------------------AP---ATNDVMPKFDVFAFGVVLLEL 501
                             AP   A N    K DV+AFGV+L E+
Sbjct: 408 TGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEI 451

>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K526e Mutation Responsible For Crouzon Syndrome Length = 324

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 105/256 (41%), Gaps = 71/256 (27%)
Query: 306 QNKLLPGVSGY----------------LGKPIVYEI--EVIMESTMNLSEHYSIGKSVYR 347
           Q+ +L GVS Y                LGKP+      +V+M      +E   I K   +
Sbjct: 12  QDPMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGAFGQVVM------AEAVGIDKDKPK 65
Query: 348 ATIDGKVLAVKKIKEDVTEE--------LRILQRIN-HANLVKLMGVSSDSQGNRFLVYE 398
             +    +AVK +K+D TEE        + +++ I  H N++ L+G  +   G  +++ E
Sbjct: 66  EAV---TVAVKMLKDDATEEDLSDLVSEMEMMKMIGKHKNIINLLGACT-QDGPLYVIVE 121
Query: 399 YAENGSLDKWLHPXXXXXXXXXXVI------FLTWSQRLRVALDVANGLQYMHEHAQPSI 452
           YA  G+L ++L             I       +T+   +     +A G++Y+   A    
Sbjct: 122 YASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYL---ASQKC 178
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP---------------- 487
           +HRD+   N+ +      KIA+F LA            TN  +P                
Sbjct: 179 IHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTH 238
Query: 488 KFDVFAFGVVLLELLS 503
           + DV++FGV++ E+ +
Sbjct: 239 QSDVWSFGVLMWEIFT 254

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 28/163 (17%)
Query: 331 STMNLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRIN 375
           S  N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +N
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N+VKL+ V   ++   +LV+E+         LH           +  +          
Sbjct: 62  HPNIVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLF 111
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            +  GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 112 QLLQGLAFCHSH---RVLHRDLKPENLLINTEGAIKLADFGLA 151

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 51  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 108
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 109 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSV 156
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 157 HAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 105/256 (41%), Gaps = 71/256 (27%)
Query: 306 QNKLLPGVSGY----------------LGKPIVYEI--EVIMESTMNLSEHYSIGKSVYR 347
           Q+ +L GVS Y                LGKP+      +V+M      +E   I K   +
Sbjct: 12  QDPMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGAFGQVVM------AEAVGIDKDKPK 65
Query: 348 ATIDGKVLAVKKIKEDVTE--------ELRILQRIN-HANLVKLMGVSSDSQGNRFLVYE 398
             +    +AVK +K+D TE        E+ +++ I  H N++ L+G  +   G  +++ E
Sbjct: 66  EAV---TVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIITLLGACT-QDGPLYVIVE 121
Query: 399 YAENGSLDKWLHPXXXXXXXXXXVI------FLTWSQRLRVALDVANGLQYMHEHAQPSI 452
           YA  G+L ++L             I       +T+   +     +A G++Y+   A    
Sbjct: 122 YASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYL---ASQKC 178
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP---------------- 487
           +HRD+   N+ +      KIA+F LA            TN  +P                
Sbjct: 179 IHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTH 238
Query: 488 KFDVFAFGVVLLELLS 503
           + DV++FGV++ E+ +
Sbjct: 239 QSDVWSFGVLMWEIFT 254

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 38/172 (22%)
Query: 357 VKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXX 416
           ++K  E++  E+ +L+ ++H N++KL  V  D +   +LV E+ E G L + +       
Sbjct: 86  IEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKK-YFYLVTEFYEGGELFEQIINRHK-- 142
Query: 417 XXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR---FKAKIA 473
                           +   + +G+ Y+H+H   +IVHRDI+  NI L+++      KI 
Sbjct: 143 --------FDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLENKNSLLNIKIV 191
Query: 474 NFSLAAPATND------------VMP---------KFDVFAFGVVLLELLSG 504
           +F L++  + D            + P         K DV++ GV++  LL G
Sbjct: 192 DFGLSSFFSKDYKLRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYILLCG 243

>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549h Mutation Responsible For Crouzon Syndrome. Length = 324

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 105/256 (41%), Gaps = 71/256 (27%)
Query: 306 QNKLLPGVSGY----------------LGKPIVYEI--EVIMESTMNLSEHYSIGKSVYR 347
           Q+ +L GVS Y                LGKP+      +V+M      +E   I K   +
Sbjct: 12  QDPMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGAFGQVVM------AEAVGIDKDKPK 65
Query: 348 ATIDGKVLAVKKIKEDVTE--------ELRILQRIN-HANLVKLMGVSSDSQGNRFLVYE 398
             +    +AVK +K+D TE        E+ +++ I  H N++ L+G  +   G  +++ E
Sbjct: 66  EAV---TVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIIHLLGACT-QDGPLYVIVE 121
Query: 399 YAENGSLDKWLHPXXXXXXXXXXVI------FLTWSQRLRVALDVANGLQYMHEHAQPSI 452
           YA  G+L ++L             I       +T+   +     +A G++Y+   A    
Sbjct: 122 YASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYL---ASQKC 178
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP---------------- 487
           +HRD+   N+ +      KIA+F LA            TN  +P                
Sbjct: 179 IHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTH 238
Query: 488 KFDVFAFGVVLLELLS 503
           + DV++FGV++ E+ +
Sbjct: 239 QSDVWSFGVLMWEIFT 254

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 28/163 (17%)
Query: 331 STMNLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRIN 375
           S  N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +N
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N+VKL+ V   ++   +LV+E+         LH           +  +          
Sbjct: 61  HPNIVKLLDVIH-TENKLYLVFEF---------LHQDLKDFMDASALTGIPLPLIKSYLF 110
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            +  GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 111 QLLQGLAFCHSH---RVLHRDLKPENLLINTEGAIKLADFGLA 150

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 44/189 (23%)
Query: 344 SVYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV 396
            V+  T +G   +A+K +K      E   +E ++++++ H  LV+L  V S+     ++V
Sbjct: 33  EVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE--PIYIV 90
Query: 397 YEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            EY   G L  +L              +L   Q + +A  +A+G+ Y+      + VHRD
Sbjct: 91  MEYMSKGCLLDFLKGEMGK--------YLRLPQLVDMAAQIASGMAYVERM---NYVHRD 139
Query: 457 IRTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVF 492
           +R  NI +      K+A+F LA                     AP          K DV+
Sbjct: 140 LRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVW 199
Query: 493 AFGVVLLEL 501
           +FG++L EL
Sbjct: 200 SFGILLTEL 208

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 28/160 (17%)
Query: 334 NLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRINHAN 378
           N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +NH N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 379 LVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVA 438
           +VKL+ V   ++   +LV+E+         LH           +  +           + 
Sbjct: 64  IVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLFQLL 113
Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 114 QGLSFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 150

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 44/189 (23%)
Query: 344 SVYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV 396
            V+  T +G   +A+K +K      E   +E ++++++ H  LV+L  V S+     ++V
Sbjct: 30  EVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE--PIYIV 87
Query: 397 YEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            EY   GSL  +L              +L   Q + ++  +A+G+ Y+      + VHRD
Sbjct: 88  TEYMNKGSLLDFLKGETGK--------YLRLPQLVDMSAQIASGMAYVERM---NYVHRD 136
Query: 457 IRTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVF 492
           +R  NI +      K+A+F LA                     AP          K DV+
Sbjct: 137 LRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVW 196
Query: 493 AFGVVLLEL 501
           +FG++L EL
Sbjct: 197 SFGILLTEL 205

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 89/195 (45%), Gaps = 45/195 (23%)
Query: 340 SIGKSVYRATIDGKVLAVKKIK-----EDVTEELRILQRINHANLVKLMGVSSDSQGNRF 394
           S+ K++++ T  G+++A+K++      +++ +E+ I+Q+ +  ++VK  G S     + +
Sbjct: 44  SVYKAIHKET--GQIVAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYYG-SYFKNTDLW 100
Query: 395 LVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
           +V EY   GS+   +               LT  +   +      GL+Y+H   +   +H
Sbjct: 101 IVMEYCGAGSVSDIIRLRNKT---------LTEDEIATILQSTLKGLEYLHFMRK---IH 148
Query: 455 RDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPK------------------------FD 490
           RDI+  NI L++   AK+A+F +A   T D M K                         D
Sbjct: 149 RDIKAGNILLNTEGHAKLADFGVAGQLT-DXMAKRNXVIGTPFWMAPEVIQEIGYNCVAD 207
Query: 491 VFAFGVVLLELLSGK 505
           +++ G+  +E+  GK
Sbjct: 208 IWSLGITAIEMAEGK 222

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 44/189 (23%)
Query: 344 SVYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV 396
            V+  T +G   +A+K +K      E   +E ++++++ H  LV+L  V S+     ++V
Sbjct: 30  EVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE--PIYIV 87
Query: 397 YEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            EY   GSL  +L              +L   Q + ++  +A+G+ Y+      + VHRD
Sbjct: 88  TEYMNKGSLLDFLKGETGK--------YLRLPQLVDMSAQIASGMAYVERM---NYVHRD 136
Query: 457 IRTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVF 492
           +R  NI +      K+A+F LA                     AP          K DV+
Sbjct: 137 LRAANILVGENLVCKVADFGLARLIEDNEWTARQGAKFPIKWTAPEAALYGRFTIKSDVW 196
Query: 493 AFGVVLLEL 501
           +FG++L EL
Sbjct: 197 SFGILLTEL 205

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 28/160 (17%)
Query: 334 NLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRINHAN 378
           N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +NH N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62
Query: 379 LVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVA 438
           +VKL+ V   ++   +LV+E+         LH           +  +           + 
Sbjct: 63  IVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLFQLL 112
Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 113 QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 149

>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K659n Mutation Responsible For An Unclassified Craniosynostosis Syndrome. Length = 324

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 105/256 (41%), Gaps = 71/256 (27%)
Query: 306 QNKLLPGVSGY----------------LGKPIVYEI--EVIMESTMNLSEHYSIGKSVYR 347
           Q+ +L GVS Y                LGKP+      +V+M      +E   I K   +
Sbjct: 12  QDPMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGAFGQVVM------AEAVGIDKDKPK 65
Query: 348 ATIDGKVLAVKKIKEDVTE--------ELRILQRIN-HANLVKLMGVSSDSQGNRFLVYE 398
             +    +AVK +K+D TE        E+ +++ I  H N++ L+G  +   G  +++ E
Sbjct: 66  EAV---TVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT-QDGPLYVIVE 121
Query: 399 YAENGSLDKWLHPXXXXXXXXXXVI------FLTWSQRLRVALDVANGLQYMHEHAQPSI 452
           YA  G+L ++L             I       +T+   +     +A G++Y+   A    
Sbjct: 122 YASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYL---ASQKC 178
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLAAP---------ATNDVMP---------------- 487
           +HRD+   N+ +      KIA+F LA            TN  +P                
Sbjct: 179 IHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKNTTNGRLPVKWMAPEALFDRVYTH 238
Query: 488 KFDVFAFGVVLLELLS 503
           + DV++FGV++ E+ +
Sbjct: 239 QSDVWSFGVLMWEIFT 254

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 28/160 (17%)
Query: 334 NLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRINHAN 378
           N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +NH N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 379 LVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVA 438
           +VKL+ V   ++   +LV+E+         LH           +  +           + 
Sbjct: 64  IVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLFQLL 113
Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 114 QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 150

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 35/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 52  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSKFDEQ 109
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S 
Sbjct: 110 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSC 157
Query: 478 AAPATN--------DVMP-----------KFDVFAFGVVLLELLSGK 505
            AP++         D +P           K D+++ GV+  E L GK
Sbjct: 158 HAPSSRRTTLSGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 204

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 44/188 (23%)
Query: 345 VYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVY 397
           V+  T +G   +A+K +K      E   +E ++++++ H  LV+L  V S+     ++V 
Sbjct: 201 VWMGTWNGTTRVAIKTLKPGNMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP--IYIVT 258
Query: 398 EYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
           EY   GSL  +L              +L   Q + +A  +A+G+ Y+      + VHRD+
Sbjct: 259 EYMSKGSLLDFLKGEMGK--------YLRLPQLVDMAAQIASGMAYVERM---NYVHRDL 307
Query: 458 RTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVFA 493
           R  NI +      K+A+F L                      AP          K DV++
Sbjct: 308 RAANILVGENLVCKVADFGLGRLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 367
Query: 494 FGVVLLEL 501
           FG++L EL
Sbjct: 368 FGILLTEL 375

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 28/160 (17%)
Query: 334 NLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRINHAN 378
           N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +NH N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 379 LVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVA 438
           +VKL+ V   ++   +LV+E+         LH           +  +           + 
Sbjct: 64  IVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLFQLL 113
Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 114 QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 150

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 44/191 (23%)
Query: 341 IGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYA 400
           I +  Y   +  K  A  K    +  E+ +L++++H N++KL  +  DS  + ++V E  
Sbjct: 45  ITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDS-SSFYIVGELY 103
Query: 401 ENGSL-DKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
             G L D+ +                +     R+   V +G+ YMH+H   +IVHRD++ 
Sbjct: 104 TGGELFDEIIKRKR-----------FSEHDAARIIKQVFSGITYMHKH---NIVHRDLKP 149
Query: 460 NNIQLDSRFK---AKIANFSLA-------------------AP----ATNDVMPKFDVFA 493
            NI L+S+ K    KI +F L+                   AP     T D   K DV++
Sbjct: 150 ENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGTYD--EKCDVWS 207
Query: 494 FGVVLLELLSG 504
            GV+L  LLSG
Sbjct: 208 AGVILYILLSG 218

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 28/160 (17%)
Query: 334 NLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRINHAN 378
           N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +NH N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62
Query: 379 LVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVA 438
           +VKL+ V   ++   +LV+E+         LH           +  +           + 
Sbjct: 63  IVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLFQLL 112
Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 113 QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 149

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 28/160 (17%)
Query: 334 NLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRINHAN 378
           N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +NH N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62
Query: 379 LVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVA 438
           +VKL+ V   ++   +LV+E+         LH           +  +           + 
Sbjct: 63  IVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLFQLL 112
Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 113 QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 149

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 28/160 (17%)
Query: 334 NLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRINHAN 378
           N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +NH N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62
Query: 379 LVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVA 438
           +VKL+ V   ++   +LV+E+         LH           +  +           + 
Sbjct: 63  IVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLFQLL 112
Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 113 QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 149

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 28/160 (17%)
Query: 334 NLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRINHAN 378
           N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +NH N
Sbjct: 5   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 64
Query: 379 LVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVA 438
           +VKL+ V   ++   +LV+E+         LH           +  +           + 
Sbjct: 65  IVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLFQLL 114
Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 115 QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 151

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 44/191 (23%)
Query: 344 SVYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV 396
            V+  T +G   +A+K +K      E   EE +I++++ H  LV+L  V S+     ++V
Sbjct: 24  EVWMGTWNGNTKVAIKTLKPGTMSPESFLEEAQIMKKLKHDKLVQLYAVVSEEP--IYIV 81
Query: 397 YEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            EY   GSL  +L            ++         +A  VA G+ Y+      + +HRD
Sbjct: 82  TEYMNKGSLLDFLKDGEGRALKLPNLV--------DMAAQVAAGMAYIERM---NYIHRD 130
Query: 457 IRTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVF 492
           +R+ NI + +    KIA+F LA                     AP          K DV+
Sbjct: 131 LRSANILVGNGLICKIADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIKSDVW 190
Query: 493 AFGVVLLELLS 503
           +FG++L EL++
Sbjct: 191 SFGILLTELVT 201

>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Length = 284

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 81/200 (40%), Gaps = 53/200 (26%)
Query: 345 VYRAT--IDGKVLAVKKIK---EDVTEELRILQRINHANLVKLMGV---------SSDSQ 390
           V++A   IDGK   +K++K   E    E++ L +++H N+V   G          +S   
Sbjct: 27  VFKAKHRIDGKTYVIKRVKYNNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKN 86
Query: 391 GNR------FLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYM 444
            +R      F+  E+ + G+L++W+                     L +   +  G+ Y+
Sbjct: 87  SSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLA--------LELFEQITKGVDYI 138
Query: 445 HEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--------------------- 483
           H      +++RD++ +NI L    + KI +F L     N                     
Sbjct: 139 H---SKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRXRSKGTLRYMSPEQISS 195
Query: 484 -DVMPKFDVFAFGVVLLELL 502
            D   + D++A G++L ELL
Sbjct: 196 QDYGKEVDLYALGLILAELL 215

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 44/189 (23%)
Query: 344 SVYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV 396
            V+  T +G   +A+K +K      E   +E ++++++ H  LV+L  V S+     ++V
Sbjct: 33  EVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE--PIYIV 90
Query: 397 YEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            EY   G L  +L              +L   Q + +A  +A+G+ Y+      + VHRD
Sbjct: 91  TEYMSKGCLLDFLKGEMGK--------YLRLPQLVDMAAQIASGMAYVERM---NYVHRD 139
Query: 457 IRTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVF 492
           +R  NI +      K+A+F LA                     AP          K DV+
Sbjct: 140 LRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVW 199
Query: 493 AFGVVLLEL 501
           +FG++L EL
Sbjct: 200 SFGILLTEL 208

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 44/191 (23%)
Query: 341 IGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYA 400
           I +  Y   +  K  A  K    +  E+ +L++++H N++KL  +  DS  + ++V E  
Sbjct: 45  ITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDS-SSFYIVGELY 103
Query: 401 ENGSL-DKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
             G L D+ +                +     R+   V +G+ YMH+H   +IVHRD++ 
Sbjct: 104 TGGELFDEIIKRKR-----------FSEHDAARIIKQVFSGITYMHKH---NIVHRDLKP 149
Query: 460 NNIQLDSRFK---AKIANFSLA-------------------AP----ATNDVMPKFDVFA 493
            NI L+S+ K    KI +F L+                   AP     T D   K DV++
Sbjct: 150 ENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGTYD--EKCDVWS 207
Query: 494 FGVVLLELLSG 504
            GV+L  LLSG
Sbjct: 208 AGVILYILLSG 218

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 44/191 (23%)
Query: 341 IGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYA 400
           I +  Y   +  K  A  K    +  E+ +L++++H N++KL  +  DS  + ++V E  
Sbjct: 45  ITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDS-SSFYIVGELY 103
Query: 401 ENGSL-DKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
             G L D+ +                +     R+   V +G+ YMH+H   +IVHRD++ 
Sbjct: 104 TGGELFDEIIKRKR-----------FSEHDAARIIKQVFSGITYMHKH---NIVHRDLKP 149
Query: 460 NNIQLDSRFK---AKIANFSLA-------------------AP----ATNDVMPKFDVFA 493
            NI L+S+ K    KI +F L+                   AP     T D   K DV++
Sbjct: 150 ENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGTYD--EKCDVWS 207
Query: 494 FGVVLLELLSG 504
            GV+L  LLSG
Sbjct: 208 AGVILYILLSG 218

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 28/160 (17%)
Query: 334 NLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRINHAN 378
           N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +NH N
Sbjct: 8   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 67
Query: 379 LVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVA 438
           +VKL+ V   ++   +LV+E+         LH           +  +           + 
Sbjct: 68  IVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLFQLL 117
Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 118 QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 154

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 28/160 (17%)
Query: 334 NLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRINHAN 378
           N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +NH N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 379 LVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVA 438
           +VKL+ V   ++   +LV+E+         LH           +  +           + 
Sbjct: 64  IVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLFQLL 113
Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 114 QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 150

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 44/189 (23%)
Query: 344 SVYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV 396
            V+  T +G   +A+K +K      E   +E ++++++ H  LV+L  V S+      +V
Sbjct: 23  EVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIX--IV 80
Query: 397 YEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            EY   GSL  +L              +L   Q + +A  +A+G+ Y+      + VHRD
Sbjct: 81  TEYMSKGSLLDFLKGETGK--------YLRLPQLVDMAAQIASGMAYVERM---NYVHRD 129
Query: 457 IRTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVF 492
           +R  NI +      K+A+F LA                     AP          K DV+
Sbjct: 130 LRAANILVGENLVCKVADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIKSDVW 189
Query: 493 AFGVVLLEL 501
           +FG++L EL
Sbjct: 190 SFGILLTEL 198

>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K641r Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 105/256 (41%), Gaps = 71/256 (27%)
Query: 306 QNKLLPGVSGY----------------LGKPIVYEI--EVIMESTMNLSEHYSIGKSVYR 347
           Q+ +L GVS Y                LGKP+      +V+M      +E   I K   +
Sbjct: 12  QDPMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGAFGQVVM------AEAVGIDKDKPK 65
Query: 348 ATIDGKVLAVKKIKEDVTE--------ELRILQRIN-HANLVKLMGVSSDSQGNRFLVYE 398
             +    +AVK +K+D TE        E+ +++ I  H N++ L+G  +   G  +++ E
Sbjct: 66  EAV---TVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT-QDGPLYVIVE 121
Query: 399 YAENGSLDKWLHPXXXXXXXXXXVI------FLTWSQRLRVALDVANGLQYMHEHAQPSI 452
           YA  G+L ++L             I       +T+   +     +A G++Y+   A    
Sbjct: 122 YASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYL---ASQKC 178
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP---------------- 487
           +HRD+   N+ +      +IA+F LA            TN  +P                
Sbjct: 179 IHRDLAARNVLVTENNVMRIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTH 238
Query: 488 KFDVFAFGVVLLELLS 503
           + DV++FGV++ E+ +
Sbjct: 239 QSDVWSFGVLMWEIFT 254

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 329 MESTMNLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQR 373
           + S  N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ 
Sbjct: 2   LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 61
Query: 374 INHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRV 433
           +NH N+VKL+ V   ++   +LV+E+  +  L K++            +           
Sbjct: 62  LNHPNIVKLLDVIH-TENKLYLVFEFL-SMDLKKFMDASALTGIPLPLIK--------SY 111
Query: 434 ALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
              +  GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 112 LFQLLQGLAFCHSH---RVLHRDLKPENLLINTEGAIKLADFGLA 153

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 28/149 (18%)
Query: 344 SVYRATIDG--KVLAVKKIK------------EDVTEELRILQRINHANLVKLMGVSSDS 389
           +VY+A      +++A+KKIK                 E+++LQ ++H N++ L+      
Sbjct: 25  TVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFG-H 83
Query: 390 QGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQ 449
           + N  LV+++ E                     + LT S      L    GL+Y+H+H  
Sbjct: 84  KSNISLVFDFMET----------DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHW- 132
Query: 450 PSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I+HRD++ NN+ LD     K+A+F LA
Sbjct: 133 --ILHRDLKPNNLLLDENGVLKLADFGLA 159

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 46/186 (24%)
Query: 352 GKVLAVKKIKE-------DVTEELRILQRINHANLVKLMGVS-SDSQGNRFLVYEYAENG 403
           G ++AVK+++        D   E++IL+ ++   +VK  GVS    + +  LV EY  +G
Sbjct: 40  GALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSG 99
Query: 404 SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
            L  +L               L  S+ L  +  +  G++Y+        VHRD+   NI 
Sbjct: 100 CLRDFLQRHRAR---------LDASRLLLYSSQICKGMEYL---GSRRCVHRDLAARNIL 147
Query: 464 LDSRFKAKIANFSLAA--PATNDVM--------PKF----------------DVFAFGVV 497
           ++S    KIA+F LA   P   D          P F                DV++FGVV
Sbjct: 148 VESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVV 207
Query: 498 LLELLS 503
           L EL +
Sbjct: 208 LYELFT 213

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 46/186 (24%)
Query: 352 GKVLAVKKIKE-------DVTEELRILQRINHANLVKLMGVS-SDSQGNRFLVYEYAENG 403
           G ++AVK+++        D   E++IL+ ++   +VK  GVS    + +  LV EY  +G
Sbjct: 39  GALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSG 98
Query: 404 SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
            L  +L               L  S+ L  +  +  G++Y+        VHRD+   NI 
Sbjct: 99  CLRDFLQRHRAR---------LDASRLLLYSSQICKGMEYL---GSRRCVHRDLAARNIL 146
Query: 464 LDSRFKAKIANFSLAA--PATNDVM--------PKF----------------DVFAFGVV 497
           ++S    KIA+F LA   P   D          P F                DV++FGVV
Sbjct: 147 VESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVV 206
Query: 498 LLELLS 503
           L EL +
Sbjct: 207 LYELFT 212

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 46/186 (24%)
Query: 352 GKVLAVKKIKE-------DVTEELRILQRINHANLVKLMGVS-SDSQGNRFLVYEYAENG 403
           G ++AVK+++        D   E++IL+ ++   +VK  GVS    + +  LV EY  +G
Sbjct: 52  GALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSG 111
Query: 404 SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
            L  +L               L  S+ L  +  +  G++Y+        VHRD+   NI 
Sbjct: 112 CLRDFLQRHRAR---------LDASRLLLYSSQICKGMEYL---GSRRCVHRDLAARNIL 159
Query: 464 LDSRFKAKIANFSLAA--PATNDVM--------PKF----------------DVFAFGVV 497
           ++S    KIA+F LA   P   D          P F                DV++FGVV
Sbjct: 160 VESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVV 219
Query: 498 LLELLS 503
           L EL +
Sbjct: 220 LYELFT 225

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 28/163 (17%)
Query: 331 STMNLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRIN 375
           S  N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +N
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL 435
           H N+VKL+ V   ++   +LV+E+  +  L K++            +             
Sbjct: 62  HPNIVKLLDVIH-TENKLYLVFEFL-SMDLKKFMDASALTGIPLPLIK--------SYLF 111
Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            +  GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 112 QLLQGLAFCHSH---RVLHRDLKPENLLINTEGAIKLADFGLA 151

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 46/186 (24%)
Query: 352 GKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVS-SDSQGNRFLVYEYAENG 403
           G ++AVK+++        D   E++IL+ ++   +VK  GVS    +    LV EY  +G
Sbjct: 36  GALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRPELRLVMEYLPSG 95
Query: 404 SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQ 463
            L  +L               L  S+ L  +  +  G++Y+        VHRD+   NI 
Sbjct: 96  CLRDFLQRHRAR---------LDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNIL 143
Query: 464 LDSRFKAKIANFSLAA--PATNDVM--------PKF----------------DVFAFGVV 497
           ++S    KIA+F LA   P   D          P F                DV++FGVV
Sbjct: 144 VESEAHVKIADFGLAKLLPLDKDXXVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVV 203
Query: 498 LLELLS 503
           L EL +
Sbjct: 204 LYELFT 209

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 35/166 (21%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 55  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSRFDEQ 112
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 113 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSNGELKIADFGWSV 160
Query: 478 AAPA--------TNDVMP-----------KFDVFAFGVVLLELLSG 504
            AP+        T D +P           K D+++ GV+  E L G
Sbjct: 161 HAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVG 206

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 35/166 (21%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           ++  +  E+ I   + H N+++L G   D+    +L+ EYA  G++ + L          
Sbjct: 55  VEHQLRREVEIQSHLRHPNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQ-KLSRFDEQ 112
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--SL 477
               ++T         ++AN L Y H      ++HRDI+  N+ L S  + KIA+F  S+
Sbjct: 113 RTATYIT---------ELANALSYCH---SKRVIHRDIKPENLLLGSNGELKIADFGWSV 160
Query: 478 AAPA--------TNDVMP-----------KFDVFAFGVVLLELLSG 504
            AP+        T D +P           K D+++ GV+  E L G
Sbjct: 161 HAPSSRRDTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVG 206

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 44/189 (23%)
Query: 344 SVYRATIDGKV-LAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV 396
            V+  T +G   +A+K +K      E   +E ++++++ H  LV+L  V S+     ++V
Sbjct: 33  EVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE--PIYIV 90
Query: 397 YEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            EY   GSL  +L              +L   Q + +A  +A+G+ Y+      + VHRD
Sbjct: 91  TEYMSKGSLLDFLKGEMGK--------YLRLPQLVDMAAQIASGMAYVERM---NYVHRD 139
Query: 457 IRTNNIQLDSRFKAKIANFSLA---------------------APAT---NDVMPKFDVF 492
           +   NI +      K+A+F LA                     AP          K DV+
Sbjct: 140 LAAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVW 199
Query: 493 AFGVVLLEL 501
           +FG++L EL
Sbjct: 200 SFGILLTEL 208

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 28/165 (16%)
Query: 329 MESTMNLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQR 373
           + S  N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ 
Sbjct: 2   LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 61
Query: 374 INHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRV 433
           +NH N+VKL+ V   ++   +LV+E+    S+D  L             + L  S   + 
Sbjct: 62  LNHPNIVKLLDVIH-TENKLYLVFEFL---SMD--LKDFMDASALTGIPLPLIKSYLFQ- 114
Query: 434 ALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
              +  GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 115 ---LLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 153

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 28/165 (16%)
Query: 329 MESTMNLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQR 373
           + S  N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ 
Sbjct: 1   LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 60
Query: 374 INHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRV 433
           +NH N+VKL+ V   ++   +LV+E+    S+D  L             + L  S   + 
Sbjct: 61  LNHPNIVKLLDVIH-TENKLYLVFEFL---SMD--LKDFMDASALTGIPLPLIKSYLFQ- 113
Query: 434 ALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
              +  GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 114 ---LLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 152

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 44/189 (23%)
Query: 355 LAVKKIKEDVTE--------ELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
           +AVK +K D TE        E+ +++ I  H N++ L+G  +   G  +++ EYA  G+L
Sbjct: 104 VAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT-QDGPLYVIVEYASKGNL 162
Query: 406 DKWLHPXXXXXXXXXXVIFLTWSQRLR------VALDVANGLQYMHEHAQPSIVHRDIRT 459
            ++L                   ++L        A  VA G++Y+   A    +HRD+  
Sbjct: 163 REYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL---ASKKCIHRDLAA 219
Query: 460 NNIQLDSRFKAKIANFSLA---------APATNDVMP----------------KFDVFAF 494
            N+ +      KIA+F LA            TN  +P                + DV++F
Sbjct: 220 RNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSF 279
Query: 495 GVVLLELLS 503
           GV+L E+ +
Sbjct: 280 GVLLWEIFT 288

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 56/194 (28%)
Query: 347 RATIDGKVLAVKKIKEDVTEELRILQRIN----------HANLVKLMGVSSDSQGNRFLV 396
           R+  +G+  A+K +K+++   L+ ++  N          H  ++++ G   D+Q   F++
Sbjct: 26  RSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQ-QIFMI 84
Query: 397 YEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLR------VALDVANGLQYMHEHAQP 450
            +Y E G L                   L  SQR         A +V   L+Y+H     
Sbjct: 85  MDYIEGGEL----------------FSLLRKSQRFPNPVAKFYAAEVCLALEYLHSK--- 125
Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSLA-----------------APATNDVMP---KFD 490
            I++RD++  NI LD     KI +F  A                 AP      P     D
Sbjct: 126 DIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYXLCGTPDYIAPEVVSTKPYNKSID 185
Query: 491 VFAFGVVLLELLSG 504
            ++FG+++ E+L+G
Sbjct: 186 WWSFGILIYEMLAG 199

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 19/120 (15%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSD-SQGNRFLVYEYAENGSLDK--WLHPXXXXXXX 418
           E V +E+ IL++++H N+VKL+ V  D ++ + ++V+E    G + +   L P       
Sbjct: 81  EQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKP------- 133
Query: 419 XXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
                 L+  Q      D+  G++Y+H      I+HRDI+ +N+ +      KIA+F ++
Sbjct: 134 ------LSEDQARFYFQDLIKGIEYLHYQ---KIIHRDIKPSNLLVGEDGHIKIADFGVS 184

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 28/160 (17%)
Query: 334 NLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRINHAN 378
           N  +   IG+  Y      R  + G+V+A+KKI+ D            E+ +L+ +NH N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62
Query: 379 LVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVA 438
           +VKL+ V   ++   +LV+E+         +H           +  +           + 
Sbjct: 63  IVKLLDVIH-TENKLYLVFEH---------VHQDLKTFMDASALTGIPLPLIKSYLFQLL 112
Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 113 QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 149

>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565a Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 104/256 (40%), Gaps = 71/256 (27%)
Query: 306 QNKLLPGVSGY----------------LGKPIVYEI--EVIMESTMNLSEHYSIGKSVYR 347
           Q+ +L GVS Y                LGKP+      +V+M      +E   I K   +
Sbjct: 12  QDPMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGAFGQVVM------AEAVGIDKDKPK 65
Query: 348 ATIDGKVLAVKKIKEDVTE--------ELRILQRIN-HANLVKLMGVSSDSQGNRFLVYE 398
             +    +AVK +K+D TE        E+ +++ I  H N++ L+G  +   G  +++  
Sbjct: 66  EAV---TVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT-QDGPLYVIVA 121
Query: 399 YAENGSLDKWLHPXXXXXXXXXXVI------FLTWSQRLRVALDVANGLQYMHEHAQPSI 452
           YA  G+L ++L             I       +T+   +     +A G++Y+   A    
Sbjct: 122 YASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYL---ASQKC 178
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP---------------- 487
           +HRD+   N+ +      KIA+F LA            TN  +P                
Sbjct: 179 IHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTH 238
Query: 488 KFDVFAFGVVLLELLS 503
           + DV++FGV++ E+ +
Sbjct: 239 QSDVWSFGVLMWEIFT 254

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLHPXXXXXXXXX 420
           E++ +E+ I + +NH N+VK  G     +GN ++L  EY   G L   + P         
Sbjct: 49  ENIKKEIXINKMLNHENVVKFYG--HRREGNIQYLFLEYCSGGELFDRIEPD-------- 98
Query: 421 XVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I +      R    +  G+ Y+H      I HRDI+  N+ LD R   KI++F LA
Sbjct: 99  --IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 44/189 (23%)
Query: 355 LAVKKIKEDVTE--------ELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
           +AVK +K D TE        E+ +++ I  H N++ L+G  +   G  +++ EYA  G+L
Sbjct: 63  VAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT-QDGPLYVIVEYASKGNL 121
Query: 406 DKWLHPXXXXXXXXXXVIFLTWSQRLR------VALDVANGLQYMHEHAQPSIVHRDIRT 459
            ++L                   ++L        A  VA G++Y+   A    +HRD+  
Sbjct: 122 REYLQAREPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL---ASKKCIHRDLAA 178
Query: 460 NNIQLDSRFKAKIANFSLA---------APATNDVMP----------------KFDVFAF 494
            N+ +      KIA+F LA            TN  +P                + DV++F
Sbjct: 179 RNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSF 238
Query: 495 GVVLLELLS 503
           GV+L E+ +
Sbjct: 239 GVLLWEIFT 247

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 44/189 (23%)
Query: 355 LAVKKIKEDVTE--------ELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
           +AVK +K D TE        E+ +++ I  H N++ L+G  +   G  +++ EYA  G+L
Sbjct: 55  VAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT-QDGPLYVIVEYASKGNL 113
Query: 406 DKWLHPXXXXXXXXXXVIFLTWSQRLR------VALDVANGLQYMHEHAQPSIVHRDIRT 459
            ++L                   ++L        A  VA G++Y+   A    +HRD+  
Sbjct: 114 REYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL---ASKKCIHRDLAA 170
Query: 460 NNIQLDSRFKAKIANFSLA---------APATNDVMP----------------KFDVFAF 494
            N+ +      KIA+F LA            TN  +P                + DV++F
Sbjct: 171 RNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSF 230
Query: 495 GVVLLELLS 503
           GV+L E+ +
Sbjct: 231 GVLLWEIFT 239

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 34/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           I+  +  EL++L   N   +V   G    S G   +  E+ + GSLD+ L          
Sbjct: 57  IRNQIIRELQVLHECNSPYIVGFYGAFY-SDGEISICMEHMDGGSLDQVLKEAKRIPEEI 115
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                       +V++ V  GL Y+ E  Q  I+HRD++ +NI ++SR + K+ +F ++ 
Sbjct: 116 LG----------KVSIAVLRGLAYLREKHQ--IMHRDVKPSNILVNSRGEIKLCDFGVSG 163
Query: 480 PATNDVMPKF---------------------DVFAFGVVLLELLSGK 505
              + +   F                     D+++ G+ L+EL  G+
Sbjct: 164 QLIDSMANSFVGTRSYMAPERLQGTHYSVQSDIWSMGLSLVELAVGR 210

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLHPXXXXXXXXX 420
           E++ +E+ I + +NH N+VK  G     +GN ++L  EY   G L   + P         
Sbjct: 50  ENIKKEIXINKMLNHENVVKFYG--HRREGNIQYLFLEYCSGGELFDRIEPD-------- 99
Query: 421 XVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I +      R    +  G+ Y+H      I HRDI+  N+ LD R   KI++F LA
Sbjct: 100 --IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 44/189 (23%)
Query: 355 LAVKKIKEDVTE--------ELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
           +AVK +K D TE        E+ +++ I  H N++ L+G  +   G  +++ EYA  G+L
Sbjct: 56  VAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT-QDGPLYVIVEYASKGNL 114
Query: 406 DKWLHPXXXXXXXXXXVIFLTWSQRLR------VALDVANGLQYMHEHAQPSIVHRDIRT 459
            ++L                   ++L        A  VA G++Y+   A    +HRD+  
Sbjct: 115 REYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL---ASKKCIHRDLAA 171
Query: 460 NNIQLDSRFKAKIANFSLA---------APATNDVMP----------------KFDVFAF 494
            N+ +      KIA+F LA            TN  +P                + DV++F
Sbjct: 172 RNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSF 231
Query: 495 GVVLLELLS 503
           GV+L E+ +
Sbjct: 232 GVLLWEIFT 240

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 28/160 (17%)
Query: 334 NLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRINHAN 378
           N  +   IG+  Y      R  + G+V+A+ KI+ D            E+ +L+ +NH N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 379 LVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVA 438
           +VKL+ V   ++   +LV+E+         LH           +  +           + 
Sbjct: 64  IVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLFQLL 113
Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 114 QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 150

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 28/160 (17%)
Query: 334 NLSEHYSIGKSVY------RATIDGKVLAVKKIKEDV---------TEELRILQRINHAN 378
           N  +   IG+  Y      R  + G+V+A+ KI+ D            E+ +L+ +NH N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHPN 62
Query: 379 LVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVA 438
           +VKL+ V   ++   +LV+E+         LH           +  +           + 
Sbjct: 63  IVKLLDVIH-TENKLYLVFEF---------LHQDLKKFMDASALTGIPLPLIKSYLFQLL 112
Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            GL + H H    ++HRD++  N+ +++    K+A+F LA
Sbjct: 113 QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLA 149

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLHPXXXXXXXXX 420
           E++ +E+ I + +NH N+VK  G     +GN ++L  EY   G L   + P         
Sbjct: 49  ENIKKEIXINKMLNHENVVKFYG--HRREGNIQYLFLEYCSGGELFDRIEPD-------- 98
Query: 421 XVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I +      R    +  G+ Y+H      I HRDI+  N+ LD R   KI++F LA
Sbjct: 99  --IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 44/189 (23%)
Query: 355 LAVKKIKEDVTE--------ELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
           +AVK +K D TE        E+ +++ I  H N++ L+G  +   G  +++ EYA  G+L
Sbjct: 52  VAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT-QDGPLYVIVEYASKGNL 110
Query: 406 DKWLHPXXXXXXXXXXVIFLTWSQRLR------VALDVANGLQYMHEHAQPSIVHRDIRT 459
            ++L                   ++L        A  VA G++Y+   A    +HRD+  
Sbjct: 111 REYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL---ASKKCIHRDLAA 167
Query: 460 NNIQLDSRFKAKIANFSLA---------APATNDVMP----------------KFDVFAF 494
            N+ +      KIA+F LA            TN  +P                + DV++F
Sbjct: 168 RNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSF 227
Query: 495 GVVLLELLS 503
           GV+L E+ +
Sbjct: 228 GVLLWEIFT 236

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 36/223 (16%)
Query: 304 LAQNKLLPGVSGYLGKPIVYEIEVIMESTMNLSEHYSIGK--SVYRATIDGKV-LAVKKI 360
           L Q   +P +S    KP   +   I   ++ L +    G+   V+ AT +    +AVK +
Sbjct: 155 LCQKLSVPCMSSKPQKPWEKDAWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTM 214
Query: 361 K------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXX 414
           K      E    E  +++ + H  LVKL  V +      +++ E+   GSL  +L     
Sbjct: 215 KPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEP--IYIITEFMAKGSLLDFLKSDEG 272
Query: 415 XXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIAN 474
                  +I          +  +A G+ ++    Q + +HRD+R  NI + +    KIA+
Sbjct: 273 SKQPLPKLI--------DFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIAD 321
Query: 475 FSLA-----------APAT---NDVMPKFDVFAFGVVLLELLS 503
           F LA           AP          K DV++FG++L+E+++
Sbjct: 322 FGLARVGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVT 364

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 44/189 (23%)
Query: 355 LAVKKIKEDVTE--------ELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
           +AVK +K D TE        E+ +++ I  H N++ L+G  +   G  +++ EYA  G+L
Sbjct: 63  VAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT-QDGPLYVIVEYASKGNL 121
Query: 406 DKWLHPXXXXXXXXXXVIFLTWSQRLR------VALDVANGLQYMHEHAQPSIVHRDIRT 459
            ++L                   ++L        A  VA G++Y+   A    +HRD+  
Sbjct: 122 REYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL---ASKKCIHRDLAA 178
Query: 460 NNIQLDSRFKAKIANFSLA---------APATNDVMP----------------KFDVFAF 494
            N+ +      KIA+F LA            TN  +P                + DV++F
Sbjct: 179 RNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSF 238
Query: 495 GVVLLELLS 503
           GV+L E+ +
Sbjct: 239 GVLLWEIFT 247

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLHPXXXXXXXXX 420
           E++ +E+ I + +NH N+VK  G     +GN ++L  EY   G L   + P         
Sbjct: 50  ENIKKEICINKMLNHENVVKFYG--HRREGNIQYLFLEYCSGGELFDRIEPD-------- 99
Query: 421 XVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I +      R    +  G+ Y+H      I HRDI+  N+ LD R   KI++F LA
Sbjct: 100 --IGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLHPXXXXXXXXX 420
           E++ +E+ I + +NH N+VK  G     +GN ++L  EY   G L   + P         
Sbjct: 49  ENIKKEICINKMLNHENVVKFYG--HRREGNIQYLFLEYCSGGELFDRIEPD-------- 98
Query: 421 XVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I +      R    +  G+ Y+H      I HRDI+  N+ LD R   KI++F LA
Sbjct: 99  --IGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 44/189 (23%)
Query: 355 LAVKKIKEDVTE--------ELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
           +AVK +K D TE        E+ +++ I  H N++ L+G  +   G  +++ EYA  G+L
Sbjct: 48  VAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT-QDGPLYVIVEYASKGNL 106
Query: 406 DKWLHPXXXXXXXXXXVIFLTWSQRLR------VALDVANGLQYMHEHAQPSIVHRDIRT 459
            ++L                   ++L        A  VA G++Y+   A    +HRD+  
Sbjct: 107 REYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSCAYQVARGMEYL---ASKKCIHRDLAA 163
Query: 460 NNIQLDSRFKAKIANFSLA---------APATNDVMP----------------KFDVFAF 494
            N+ +      KIA+F LA            TN  +P                + DV++F
Sbjct: 164 RNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSF 223
Query: 495 GVVLLELLS 503
           GV+L E+ +
Sbjct: 224 GVLLWEIFT 232

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLHPXXXXXXXXX 420
           E++ +E+ I + +NH N+VK  G     +GN ++L  EY   G L   + P         
Sbjct: 50  ENIKKEICINKMLNHENVVKFYG--HRREGNIQYLFLEYCSGGELFDRIEPD-------- 99
Query: 421 XVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I +      R    +  G+ Y+H      I HRDI+  N+ LD R   KI++F LA
Sbjct: 100 --IGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLHPXXXXXXXXX 420
           E++ +E+ I + +NH N+VK  G     +GN ++L  EY   G L   + P         
Sbjct: 50  ENIKKEICINKMLNHENVVKFYG--HRREGNIQYLFLEYCSGGELFDRIEPD-------- 99
Query: 421 XVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I +      R    +  G+ Y+H      I HRDI+  N+ LD R   KI++F LA
Sbjct: 100 --IGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLHPXXXXXXXXX 420
           E++ +E+ I + +NH N+VK  G     +GN ++L  EY   G L   + P         
Sbjct: 50  ENIKKEICINKMLNHENVVKFYG--HRREGNIQYLFLEYCSGGELFDRIEPD-------- 99
Query: 421 XVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I +      R    +  G+ Y+H      I HRDI+  N+ LD R   KI++F LA
Sbjct: 100 --IGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Inhibitor Length = 326

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 38/197 (19%)
Query: 318 GKPIVYEIEVIMESTMNLSEHYSIGKS----VYRATIDGKVLAVK----KIKEDVTEELR 369
           G P++  ++  +  T+ L E  SIGK     V+R    G+ +AVK    + +     E  
Sbjct: 18  GLPLL--VQRTIARTIVLQE--SIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAE 73
Query: 370 ILQRI--NHANLVKLMGVSSDSQG---NRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIF 424
           I Q +   H N++  +   +   G     +LV +Y E+GSL  +L+              
Sbjct: 74  IYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYT----------- 122
Query: 425 LTWSQRLRVALDVANGLQYMH-----EHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA- 478
           +T    +++AL  A+GL ++H        +P+I HRD+++ NI +       IA+  LA 
Sbjct: 123 VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 182
Query: 479 ----APATNDVMPKFDV 491
               A  T D+ P   V
Sbjct: 183 RHDSATDTIDIAPNHRV 199

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 44/189 (23%)
Query: 355 LAVKKIKEDVTE--------ELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
           +AVK +K D TE        E+ +++ I  H N++ L+G  +   G  +++ EYA  G+L
Sbjct: 63  VAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT-QDGPLYVIVEYASKGNL 121
Query: 406 DKWLHPXXXXXXXXXXVIFLTWSQRLR------VALDVANGLQYMHEHAQPSIVHRDIRT 459
            ++L                   ++L        A  VA G++Y+   A    +HRD+  
Sbjct: 122 REYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSCAYQVARGMEYL---ASKKCIHRDLAA 178
Query: 460 NNIQLDSRFKAKIANFSLA---------APATNDVMP----------------KFDVFAF 494
            N+ +      KIA+F LA            TN  +P                + DV++F
Sbjct: 179 RNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSF 238
Query: 495 GVVLLELLS 503
           GV+L E+ +
Sbjct: 239 GVLLWEIFT 247

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 34/146 (23%)
Query: 352 GKVLAVKKIKEDVTEE------------LRILQRINHANLVKLMGVSSDSQGNR----FL 395
           G+ +A+K+++    EE            LR L+   H N+V+L  V + S+ +R     L
Sbjct: 37  GRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTL 96
Query: 396 VYEYAENG---SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSI 452
           V+E+ +      LDK   P          +      Q LR       GL ++H H    +
Sbjct: 97  VFEHVDQDLTTYLDKVPEPGVPTETIKDMMF-----QLLR-------GLDFLHSH---RV 141
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA 478
           VHRD++  NI + S  + K+A+F LA
Sbjct: 142 VHRDLKPQNILVTSSGQIKLADFGLA 167

>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I Tgf-Beta Receptor In Complex With Fkbp12 Length = 342

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 38/197 (19%)
Query: 318 GKPIVYEIEVIMESTMNLSEHYSIGKS----VYRATIDGKVLAVK----KIKEDVTEELR 369
           G P++  ++  +  T+ L E  SIGK     V+R    G+ +AVK    + +     E  
Sbjct: 31  GLPLL--VQRTIARTIVLQE--SIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAE 86
Query: 370 ILQRI--NHANLVKLMGVSSDSQG---NRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIF 424
           I Q +   H N++  +   +   G     +LV +Y E+GSL  +L+              
Sbjct: 87  IYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYT----------- 135
Query: 425 LTWSQRLRVALDVANGLQYMH-----EHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA- 478
           +T    +++AL  A+GL ++H        +P+I HRD+++ NI +       IA+  LA 
Sbjct: 136 VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 195
Query: 479 ----APATNDVMPKFDV 491
               A  T D+ P   V
Sbjct: 196 RHDSATDTIDIAPNHRV 212

>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565g Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 104/256 (40%), Gaps = 71/256 (27%)
Query: 306 QNKLLPGVSGY----------------LGKPIVYEI--EVIMESTMNLSEHYSIGKSVYR 347
           Q+ +L GVS Y                LGKP+      +V+M      +E   I K   +
Sbjct: 12  QDPMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGAFGQVVM------AEAVGIDKDKPK 65
Query: 348 ATIDGKVLAVKKIKEDVTE--------ELRILQRIN-HANLVKLMGVSSDSQGNRFLVYE 398
             +    +AVK +K+D TE        E+ +++ I  H N++ L+G  +   G  +++  
Sbjct: 66  EAV---TVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT-QDGPLYVIVG 121
Query: 399 YAENGSLDKWLHPXXXXXXXXXXVI------FLTWSQRLRVALDVANGLQYMHEHAQPSI 452
           YA  G+L ++L             I       +T+   +     +A G++Y+   A    
Sbjct: 122 YASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYL---ASQKC 178
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP---------------- 487
           +HRD+   N+ +      KIA+F LA            TN  +P                
Sbjct: 179 IHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTH 238
Query: 488 KFDVFAFGVVLLELLS 503
           + DV++FGV++ E+ +
Sbjct: 239 QSDVWSFGVLMWEIFT 254

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 42/170 (24%)
Query: 373 RINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLR 432
           +++H N+V ++ V  +     +LV EY E  +L +++               L+    + 
Sbjct: 67  QLSHQNIVSMIDVDEEDDC-YYLVMEYIEGPTLSEYIESHGP----------LSVDTAIN 115
Query: 433 VALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAP-------ATNDV 485
               + +G+++ H+     IVHRDI+  NI +DS    KI +F +A          TN V
Sbjct: 116 FTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHV 172
Query: 486 MPKF-----------------DVFAFGVVLLELLSGKKATRTTENGKTAV 518
           +                    D+++ G+VL E+L G+       NG+TAV
Sbjct: 173 LGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPF----NGETAV 218

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 34/146 (23%)
Query: 352 GKVLAVKKIKEDVTEE------------LRILQRINHANLVKLMGVSSDSQGNR----FL 395
           G+ +A+K+++    EE            LR L+   H N+V+L  V + S+ +R     L
Sbjct: 37  GRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTL 96
Query: 396 VYEYAENG---SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSI 452
           V+E+ +      LDK   P          +      Q LR       GL ++H H    +
Sbjct: 97  VFEHVDQDLTTYLDKVPEPGVPTETIKDMMF-----QLLR-------GLDFLHSH---RV 141
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA 478
           VHRD++  NI + S  + K+A+F LA
Sbjct: 142 VHRDLKPQNILVTSSGQIKLADFGLA 167

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 34/146 (23%)
Query: 352 GKVLAVKKIKEDVTEE------------LRILQRINHANLVKLMGVSSDSQGNR----FL 395
           G+ +A+K+++    EE            LR L+   H N+V+L  V + S+ +R     L
Sbjct: 37  GRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTL 96
Query: 396 VYEYAENG---SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSI 452
           V+E+ +      LDK   P          +      Q LR       GL ++H H    +
Sbjct: 97  VFEHVDQDLTTYLDKVPEPGVPTETIKDMMF-----QLLR-------GLDFLHSH---RV 141
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA 478
           VHRD++  NI + S  + K+A+F LA
Sbjct: 142 VHRDLKPQNILVTSSGQIKLADFGLA 167

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLHPXXXXXXXXX 420
           E++ +E+ I + +NH N+VK  G     +GN ++L  EY   G L   + P         
Sbjct: 50  ENIKKEICINKMLNHENVVKFYG--HRREGNIQYLFLEYCSGGELFDRIEPD-------- 99
Query: 421 XVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I +      R    +  G+ Y+H      I HRDI+  N+ LD R   KI++F LA
Sbjct: 100 --IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLHPXXXXXXXXX 420
           E++ +E+ I + +NH N+VK  G     +GN ++L  EY   G L   + P         
Sbjct: 49  ENIKKEICINKMLNHENVVKFYG--HRREGNIQYLFLEYCSGGELFDRIEPD-------- 98
Query: 421 XVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I +      R    +  G+ Y+H      I HRDI+  N+ LD R   KI++F LA
Sbjct: 99  --IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLHPXXXXXXXXX 420
           E++ +E+ I + +NH N+VK  G     +GN ++L  EY   G L   + P         
Sbjct: 48  ENIKKEICINKMLNHENVVKFYG--HRREGNIQYLFLEYCSGGELFDRIEPD-------- 97
Query: 421 XVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I +      R    +  G+ Y+H      I HRDI+  N+ LD R   KI++F LA
Sbjct: 98  --IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLA 150

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 44/189 (23%)
Query: 355 LAVKKIKEDVTE--------ELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
           +AVK +K D TE        E+ +++ I  H N++ L+G  +   G  +++ EYA  G+L
Sbjct: 63  VAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT-QDGPLYVIVEYASKGNL 121
Query: 406 DKWLHPXX------XXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
            ++L                     L+    +  A  VA G++Y+   A    +HRD+  
Sbjct: 122 REYLQARRPPGLEFSFNPSHNPEEQLSSKDLVSCAYQVARGMEYL---ASKKCIHRDLAA 178
Query: 460 NNIQLDSRFKAKIANFSLA---------APATNDVMP----------------KFDVFAF 494
            N+ +      KIA+F LA            TN  +P                + DV++F
Sbjct: 179 RNVLVTEDNVMKIADFGLARDIHHIDXXKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSF 238
Query: 495 GVVLLELLS 503
           GV+L E+ +
Sbjct: 239 GVLLWEIFT 247

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLHPXXXXXXXXX 420
           E++ +E+ I + +NH N+VK  G     +GN ++L  EY   G L   + P         
Sbjct: 49  ENIKKEICINKMLNHENVVKFYG--HRREGNIQYLFLEYCSGGELFDRIEPD-------- 98
Query: 421 XVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I +      R    +  G+ Y+H      I HRDI+  N+ LD R   KI++F LA
Sbjct: 99  --IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLHPXXXXXXXXX 420
           E++ +E+ I + +NH N+VK  G     +GN ++L  EY   G L   + P         
Sbjct: 49  ENIKKEICINKMLNHENVVKFYG--HRREGNIQYLFLEYCSGGELFDRIEPD-------- 98
Query: 421 XVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I +      R    +  G+ Y+H      I HRDI+  N+ LD R   KI++F LA
Sbjct: 99  --IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLHPXXXXXXXXX 420
           E++ +E+ I + +NH N+VK  G     +GN ++L  EY   G L   + P         
Sbjct: 49  ENIKKEICINKMLNHENVVKFYG--HRREGNIQYLFLEYCSGGELFDRIEPD-------- 98
Query: 421 XVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I +      R    +  G+ Y+H      I HRDI+  N+ LD R   KI++F LA
Sbjct: 99  --IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLHPXXXXXXXXX 420
           E++ +E+ I + +NH N+VK  G     +GN ++L  EY   G L   + P         
Sbjct: 50  ENIKKEICINKMLNHENVVKFYG--HRREGNIQYLFLEYCSGGELFDRIEPD-------- 99
Query: 421 XVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I +      R    +  G+ Y+H      I HRDI+  N+ LD R   KI++F LA
Sbjct: 100 --IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLHPXXXXXXXXX 420
           E++ +E+ I + +NH N+VK  G     +GN ++L  EY   G L   + P         
Sbjct: 49  ENIKKEICINKMLNHENVVKFYG--HRREGNIQYLFLEYCSGGELFDRIEPD-------- 98
Query: 421 XVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I +      R    +  G+ Y+H      I HRDI+  N+ LD R   KI++F LA
Sbjct: 99  --IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLHPXXXXXXXXX 420
           E++ +E+ I + +NH N+VK  G     +GN ++L  EY   G L   + P         
Sbjct: 49  ENIKKEICINKMLNHENVVKFYG--HRREGNIQYLFLEYCSGGELFDRIEPD-------- 98
Query: 421 XVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I +      R    +  G+ Y+H      I HRDI+  N+ LD R   KI++F LA
Sbjct: 99  --IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 49/185 (26%)
Query: 355 LAVKKIKEDVTEELR--------ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD 406
           +A+K +K   TE+ R        I+ + +H N++ L GV + S     ++ E+ ENGSLD
Sbjct: 38  VAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKST-PVMIITEFMENGSLD 96
Query: 407 KWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS 466
            +L                T  Q + +   +A G++Y+   A  + VHR +   NI ++S
Sbjct: 97  SFLRQNDGQ---------FTVIQLVGMLRGIAAGMKYL---ADMNYVHRALAARNILVNS 144
Query: 467 RFKAKIANFSLAAPATNDV------------MP------------KF----DVFAFGVVL 498
               K+++F L+    +D             +P            KF    DV+++G+V+
Sbjct: 145 NLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVM 204
Query: 499 LELLS 503
            E++S
Sbjct: 205 WEVMS 209

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLHPXXXXXXXXX 420
           E++ +E+ I + +NH N+VK  G     +GN ++L  EY   G L   + P         
Sbjct: 49  ENIKKEICINKMLNHENVVKFYG--HRREGNIQYLFLEYCSGGELFDRIEPD-------- 98
Query: 421 XVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I +      R    +  G+ Y+H      I HRDI+  N+ LD R   KI++F LA
Sbjct: 99  --IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLHPXXXXXXXXX 420
           E++ +E+ I + +NH N+VK  G     +GN ++L  EY   G L   + P         
Sbjct: 49  ENIKKEICINKMLNHENVVKFYG--HRREGNIQYLFLEYCSGGELFDRIEPD-------- 98
Query: 421 XVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I +      R    +  G+ Y+H      I HRDI+  N+ LD R   KI++F LA
Sbjct: 99  --IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 34/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           I+  +  EL++L   N   +V   G    S G   +  E+ + GSLD+ L          
Sbjct: 50  IRNQIIRELQVLHECNSPYIVGFYGAFY-SDGEISICMEHMDGGSLDQVLKKAGRIPEQI 108
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                       +V++ V  GL Y+ E  +  I+HRD++ +NI ++SR + K+ +F ++ 
Sbjct: 109 LG----------KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSG 156
Query: 480 PATNDVMPKF---------------------DVFAFGVVLLELLSGK 505
              +++  +F                     D+++ G+ L+E+  G+
Sbjct: 157 QLIDEMANEFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 203

>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542 Length = 309

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 34/175 (19%)
Query: 340 SIGKS----VYRATIDGKVLAVK----KIKEDVTEELRILQRI--NHANLVKLMGVSSDS 389
           SIGK     V+R    G+ +AVK    + +     E  I Q +   H N++  +   +  
Sbjct: 16  SIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKD 75
Query: 390 QGNR---FLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMH- 445
            G     +LV +Y E+GSL  +L+              +T    +++AL  A+GL ++H 
Sbjct: 76  NGTWTQLWLVSDYHEHGSLFDYLNRYT-----------VTVEGMIKLALSTASGLAHLHM 124
Query: 446 ----EHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA-----APATNDVMPKFDV 491
                  +P+I HRD+++ NI +       IA+  LA     A  T D+ P   V
Sbjct: 125 EIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRV 179

>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp Site Inhibitor Length = 301

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 34/175 (19%)
Query: 340 SIGKS----VYRATIDGKVLAVK----KIKEDVTEELRILQRI--NHANLVKLMGVSSDS 389
           SIGK     V+R    G+ +AVK    + +     E  I Q +   H N++  +   +  
Sbjct: 11  SIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKD 70
Query: 390 QGNR---FLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMH- 445
            G     +LV +Y E+GSL  +L+              +T    +++AL  A+GL ++H 
Sbjct: 71  NGTWTQLWLVSDYHEHGSLFDYLNRYT-----------VTVEGMIKLALSTASGLAHLHM 119
Query: 446 ----EHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA-----APATNDVMPKFDV 491
                  +P+I HRD+++ NI +       IA+  LA     A  T D+ P   V
Sbjct: 120 EIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRV 174

>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3- Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine Length = 306

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 34/175 (19%)
Query: 340 SIGKS----VYRATIDGKVLAVK----KIKEDVTEELRILQRI--NHANLVKLMGVSSDS 389
           SIGK     V+R    G+ +AVK    + +     E  I Q +   H N++  +   +  
Sbjct: 13  SIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKD 72
Query: 390 QGNR---FLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMH- 445
            G     +LV +Y E+GSL  +L+              +T    +++AL  A+GL ++H 
Sbjct: 73  NGTWTQLWLVSDYHEHGSLFDYLNRYT-----------VTVEGMIKLALSTASGLAHLHM 121
Query: 446 ----EHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA-----APATNDVMPKFDV 491
                  +P+I HRD+++ NI +       IA+  LA     A  T D+ P   V
Sbjct: 122 EIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRV 176

>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain Length = 306

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 82/213 (38%), Gaps = 66/213 (30%)
Query: 345 VYRAT--IDGKVLAVKKIK---EDVTEELRILQRINHANLVKLMG----------VSSDS 389
           V++A   IDGK   ++++K   E    E++ L +++H N+V   G           S DS
Sbjct: 28  VFKAKHRIDGKTYVIRRVKYNNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDS 87
Query: 390 ------------QGNR------FLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRL 431
                         +R      F+  E+ + G+L++W+                     L
Sbjct: 88  LESSDYDPENSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLA--------L 139
Query: 432 RVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------- 483
            +   +  G+ Y+H      ++HRD++ +NI L    + KI +F L     N        
Sbjct: 140 ELFEQITKGVDYIH---SKKLIHRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSK 196
Query: 484 --------------DVMPKFDVFAFGVVLLELL 502
                         D   + D++A G++L ELL
Sbjct: 197 GTLRYMSPEQISSQDYGKEVDLYALGLILAELL 229

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 336 SEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFL 395
           +E    G  V    ID K +    + + V  E++I  ++ H ++++L     DS    +L
Sbjct: 30  AESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSN-YVYL 88
Query: 396 VYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHR 455
           V E   NG ++++L            V   + ++       +  G+ Y+H H    I+HR
Sbjct: 89  VLEMCHNGEMNRYL---------KNRVKPFSENEARHFMHQIITGMLYLHSHG---ILHR 136
Query: 456 DIRTNNIQLDSRFKAKIANFSLA 478
           D+  +N+ L      KIA+F LA
Sbjct: 137 DLTLSNLLLTRNMNIKIADFGLA 159

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLHPXXXXXXXXX 420
           E++ +E+ I + +NH N+VK  G     +GN ++L  EY   G L   + P         
Sbjct: 49  ENIKKEICINKMLNHENVVKFYG--HRREGNIQYLFLEYCSGGELFDRIEPD-------- 98
Query: 421 XVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I +      R    +  G+ Y+H      I HRDI+  N+ LD R   KI++F LA
Sbjct: 99  --IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLA 151

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 53/189 (28%)
Query: 352 GKVLAVKK---------IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAEN 402
           G+++A+KK         IK+    E+R+L+++ H NLV L+ V    +    LV+EY ++
Sbjct: 28  GQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKR-RLHLVFEYCDH 86
Query: 403 ---GSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
                LD++             V  +TW             + + H+H   + +HRD++ 
Sbjct: 87  TVLHELDRY-----QRGVPEHLVKSITWQ--------TLQAVNFCHKH---NCIHRDVKP 130
Query: 460 NNIQLDSRFKAKIANFSLAAPATN------------------------DVMPKFDVFAFG 495
            NI +      K+ +F  A   T                            P  DV+A G
Sbjct: 131 ENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIG 190
Query: 496 VVLLELLSG 504
            V  ELLSG
Sbjct: 191 CVFAELLSG 199

>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human Tgf- Beta Type I Receptor Length = 303

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 34/175 (19%)
Query: 340 SIGKS----VYRATIDGKVLAVK----KIKEDVTEELRILQRI--NHANLVKLMGVSSDS 389
           SIGK     V+R    G+ +AVK    + +     E  I Q +   H N++  +   +  
Sbjct: 10  SIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKD 69
Query: 390 QGNR---FLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMH- 445
            G     +LV +Y E+GSL  +L+              +T    +++AL  A+GL ++H 
Sbjct: 70  NGTWTQLWLVSDYHEHGSLFDYLNRYT-----------VTVEGMIKLALSTASGLAHLHM 118
Query: 446 ----EHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA-----APATNDVMPKFDV 491
                  +P+I HRD+++ NI +       IA+  LA     A  T D+ P   V
Sbjct: 119 EIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRV 173

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 48/195 (24%)
Query: 345 VYRAT-IDGKVLAVKKIKEDVTEE---------LRILQRINHANLVKLMGVSSDSQGNRF 394
           VY+A    G+++A+K+I+ D  +E         + +L+ ++H N+V L+ V   S+    
Sbjct: 37  VYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIH-SERCLT 95
Query: 395 LVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
           LV+E+ E   L K L             I+L   Q LR       G+ + H+H    I+H
Sbjct: 96  LVFEFMEK-DLKKVLDENKTGLQDSQIKIYLY--QLLR-------GVAHCHQH---RILH 142
Query: 455 RDIRTNNIQLDSRFKAKIANFSLA--------------------AP----ATNDVMPKFD 490
           RD++  N+ ++S    K+A+F LA                    AP     +       D
Sbjct: 143 RDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVD 202
Query: 491 VFAFGVVLLELLSGK 505
           +++ G +  E+++GK
Sbjct: 203 IWSIGCIFAEMITGK 217

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 48/195 (24%)
Query: 345 VYRAT-IDGKVLAVKKIKEDVTEE---------LRILQRINHANLVKLMGVSSDSQGNRF 394
           VY+A    G+++A+K+I+ D  +E         + +L+ ++H N+V L+ V   S+    
Sbjct: 37  VYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIH-SERCLT 95
Query: 395 LVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
           LV+E+ E   L K L             I+L   Q LR       G+ + H+H    I+H
Sbjct: 96  LVFEFMEK-DLKKVLDENKTGLQDSQIKIYLY--QLLR-------GVAHCHQH---RILH 142
Query: 455 RDIRTNNIQLDSRFKAKIANFSLA--------------------AP----ATNDVMPKFD 490
           RD++  N+ ++S    K+A+F LA                    AP     +       D
Sbjct: 143 RDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVD 202
Query: 491 VFAFGVVLLELLSGK 505
           +++ G +  E+++GK
Sbjct: 203 IWSIGCIFAEMITGK 217

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 96/222 (43%), Gaps = 60/222 (27%)
Query: 328 IMESTMNLSEHYS----IGKSVY------RATIDGKVLAVKKI----------KEDVTEE 367
           +  ST   S+ Y     +GK  +      +  I G+  AVK I          KE +  E
Sbjct: 23  VQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLRE 82
Query: 368 LRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSL-DKWLHPXXXXXXXXXXVIFLT 426
           +++L++++H N++KL     D +G  +LV E    G L D+ +                 
Sbjct: 83  VQLLKQLDHPNIMKLYEFFED-KGYFYLVGEVYTGGELFDEIISRKRFSEVDAA------ 135
Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSL-----A 478
                R+   V +G+ YMH++    IVHRD++  N+ L+S+ K    +I +F L     A
Sbjct: 136 -----RIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEA 187
Query: 479 APATND-------VMP---------KFDVFAFGVVLLELLSG 504
           +    D       + P         K DV++ GV+L  LLSG
Sbjct: 188 SKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSG 229

>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 43/190 (22%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           +K+++  E  ++Q++++  +V+++G+      +  LV E AE G L+K+L          
Sbjct: 55  LKDELLAEANVMQQLDNPYIVRMIGICEAE--SWMLVMEMAELGPLNKYLQQNRHVKDKN 112
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                      + +   V+ G++Y+ E    + VHRD+   N+ L ++  AKI++F L+ 
Sbjct: 113 I----------IELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSK 159
Query: 480 PATND--------------------------VMPKFDVFAFGVVLLELLS-GKKATRTTE 512
               D                             K DV++FGV++ E  S G+K  R  +
Sbjct: 160 ALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK 219
Query: 513 NGK-TAVLWK 521
             + TA+L K
Sbjct: 220 GSEVTAMLEK 229

>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 636

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 43/190 (22%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           +K+++  E  ++Q++++  +V+++G+      +  LV E AE G L+K+L          
Sbjct: 414 LKDELLAEANVMQQLDNPYIVRMIGICEAE--SWMLVMEMAELGPLNKYLQQNRHVKDKN 471
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                      + +   V+ G++Y+ E    + VHRD+   N+ L ++  AKI++F L+ 
Sbjct: 472 I----------IELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSK 518
Query: 480 PATND--------------------------VMPKFDVFAFGVVLLELLS-GKKATRTTE 512
               D                             K DV++FGV++ E  S G+K  R  +
Sbjct: 519 ALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK 578
Query: 513 NGK-TAVLWK 521
             + TA+L K
Sbjct: 579 GSEVTAMLEK 588

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 76/177 (42%), Gaps = 26/177 (14%)
Query: 352 GKVLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNR-----FLVYE 398
           G+ +A+K+ +++++         E++I++++NH N+V    V    Q         L  E
Sbjct: 39  GEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAME 98
Query: 399 YAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIR 458
           Y E G L K+L+            I    S       D+++ L+Y+HE+    I+HRD++
Sbjct: 99  YCEGGDLRKYLNQFENCCGLKEGPIRTLLS-------DISSALRYLHEN---RIIHRDLK 148
Query: 459 TNNIQLD---SRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
             NI L     R   KI +   A       +    V     +  ELL  KK T T +
Sbjct: 149 PENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVD 205

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 76/177 (42%), Gaps = 26/177 (14%)
Query: 352 GKVLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNR-----FLVYE 398
           G+ +A+K+ +++++         E++I++++NH N+V    V    Q         L  E
Sbjct: 40  GEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAME 99
Query: 399 YAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIR 458
           Y E G L K+L+            I    S       D+++ L+Y+HE+    I+HRD++
Sbjct: 100 YCEGGDLRKYLNQFENCCGLKEGPIRTLLS-------DISSALRYLHEN---RIIHRDLK 149
Query: 459 TNNIQLD---SRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
             NI L     R   KI +   A       +    V     +  ELL  KK T T +
Sbjct: 150 PENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVD 206

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGN-RFLVYEYAENGSLDKWLHPXXXXXXXXX 420
           E++ +E+ I   +NH N+VK  G     +GN ++L  EY   G L   + P         
Sbjct: 50  ENIKKEICINAMLNHENVVKFYG--HRREGNIQYLFLEYCSGGELFDRIEPD-------- 99
Query: 421 XVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I +      R    +  G+ Y+H      I HRDI+  N+ LD R   KI++F LA
Sbjct: 100 --IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLA 152

>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 635

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 43/190 (22%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           +K+++  E  ++Q++++  +V+++G+      +  LV E AE G L+K+L          
Sbjct: 413 LKDELLAEANVMQQLDNPYIVRMIGICEAE--SWMLVMEMAELGPLNKYLQQNRHVKDKN 470
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                      + +   V+ G++Y+ E    + VHRD+   N+ L ++  AKI++F L+ 
Sbjct: 471 I----------IELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSK 517
Query: 480 PATND--------------------------VMPKFDVFAFGVVLLELLS-GKKATRTTE 512
               D                             K DV++FGV++ E  S G+K  R  +
Sbjct: 518 ALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK 577
Query: 513 NGK-TAVLWK 521
             + TA+L K
Sbjct: 578 GSEVTAMLEK 587

>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7- Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2- Phenylcyclopropyl)urea Length = 293

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 43/190 (22%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           +K+++  E  ++Q++++  +V+++G+      +  LV E AE G L+K+L          
Sbjct: 71  LKDELLAEANVMQQLDNPYIVRMIGICEAE--SWMLVMEMAELGPLNKYLQQNRHVKDKN 128
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                      + +   V+ G++Y+ E    + VHRD+   N+ L ++  AKI++F L+ 
Sbjct: 129 I----------IELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSK 175
Query: 480 PATND--------------------------VMPKFDVFAFGVVLLELLS-GKKATRTTE 512
               D                             K DV++FGV++ E  S G+K  R  +
Sbjct: 176 ALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK 235
Query: 513 NGK-TAVLWK 521
             + TA+L K
Sbjct: 236 GSEVTAMLEK 245

>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic Domain With Pyrazolylbenzimidazole Inhibitor 416 Length = 299

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 43/190 (22%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           +K+++  E  ++Q++++  +V+++G+      +  LV E AE G L+K+L          
Sbjct: 71  LKDELLAEANVMQQLDNPYIVRMIGICEAE--SWMLVMEMAELGPLNKYLQQNRHVKDKN 128
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                      + +   V+ G++Y+ E    + VHRD+   N+ L ++  AKI++F L+ 
Sbjct: 129 I----------IELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSK 175
Query: 480 PATND--------------------------VMPKFDVFAFGVVLLELLS-GKKATRTTE 512
               D                             K DV++FGV++ E  S G+K  R  +
Sbjct: 176 ALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK 235
Query: 513 NGK-TAVLWK 521
             + TA+L K
Sbjct: 236 GSEVTAMLEK 245

>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 43/190 (22%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           +K+++  E  ++Q++++  +V+++G+      +  LV E AE G L+K+L          
Sbjct: 55  LKDELLAEANVMQQLDNPYIVRMIGICEAE--SWMLVMEMAELGPLNKYLQQNRHVKDKN 112
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                      + +   V+ G++Y+ E    + VHRD+   N+ L ++  AKI++F L+ 
Sbjct: 113 I----------IELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSK 159
Query: 480 PATND--------------------------VMPKFDVFAFGVVLLELLS-GKKATRTTE 512
               D                             K DV++FGV++ E  S G+K  R  +
Sbjct: 160 ALRADENXYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK 219
Query: 513 NGK-TAVLWK 521
             + TA+L K
Sbjct: 220 GSEVTAMLEK 229

>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylaminopyrimidines As Potent Inhibitors Of Spleen Tyrosine Kinase (Syk) Length = 291

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 43/190 (22%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           +K+++  E  ++Q++++  +V+++G+      +  LV E AE G L+K+L          
Sbjct: 69  LKDELLAEANVMQQLDNPYIVRMIGICEAE--SWMLVMEMAELGPLNKYLQQNRHVKDKN 126
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                      + +   V+ G++Y+ E    + VHRD+   N+ L ++  AKI++F L+ 
Sbjct: 127 I----------IELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSK 173
Query: 480 PATND--------------------------VMPKFDVFAFGVVLLELLS-GKKATRTTE 512
               D                             K DV++FGV++ E  S G+K  R  +
Sbjct: 174 ALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK 233
Query: 513 NGK-TAVLWK 521
             + TA+L K
Sbjct: 234 GSEVTAMLEK 243

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 24/144 (16%)
Query: 345 VYRATID-GKVLAVKKI---KED------VTEELRILQRINHANLVKLMGVSSDSQGNRF 394
           VY+A  + G+  A+KKI   KED         E+ IL+ + H+N+VKL  V   ++    
Sbjct: 18  VYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIH-TKKRLV 76
Query: 395 LVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
           LV+E+ +   L K L              FL         L + NG+ Y H+     ++H
Sbjct: 77  LVFEHLDQ-DLKKLLDVCEGGLESVTAKSFL---------LQLLNGIAYCHDR---RVLH 123
Query: 455 RDIRTNNIQLDSRFKAKIANFSLA 478
           RD++  N+ ++   + KIA+F LA
Sbjct: 124 RDLKPQNLLINREGELKIADFGLA 147

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 24/144 (16%)
Query: 345 VYRATID-GKVLAVKKI---KED------VTEELRILQRINHANLVKLMGVSSDSQGNRF 394
           VY+A  + G+  A+KKI   KED         E+ IL+ + H+N+VKL  V   ++    
Sbjct: 18  VYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIH-TKKRLV 76
Query: 395 LVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
           LV+E+ +   L K L              FL         L + NG+ Y H+     ++H
Sbjct: 77  LVFEHLDQ-DLKKLLDVCEGGLESVTAKSFL---------LQLLNGIAYCHDR---RVLH 123
Query: 455 RDIRTNNIQLDSRFKAKIANFSLA 478
           RD++  N+ ++   + KIA+F LA
Sbjct: 124 RDLKPQNLLINREGELKIADFGLA 147

>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain Length = 291

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 43/190 (22%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           +K+++  E  ++Q++++  +V+++G+      +  LV E AE G L+K+L          
Sbjct: 61  LKDELLAEANVMQQLDNPYIVRMIGICEAE--SWMLVMEMAELGPLNKYLQQNRHVKDKN 118
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                      + +   V+ G++Y+ E    + VHRD+   N+ L ++  AKI++F L+ 
Sbjct: 119 I----------IELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSK 165
Query: 480 PATND--------------------------VMPKFDVFAFGVVLLELLS-GKKATRTTE 512
               D                             K DV++FGV++ E  S G+K  R  +
Sbjct: 166 ALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK 225
Query: 513 NGK-TAVLWK 521
             + TA+L K
Sbjct: 226 GSEVTAMLEK 235

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 24/144 (16%)
Query: 345 VYRATID-GKVLAVKKI---KED------VTEELRILQRINHANLVKLMGVSSDSQGNRF 394
           VY+A  + G+  A+KKI   KED         E+ IL+ + H+N+VKL  V   ++    
Sbjct: 18  VYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIH-TKKRLV 76
Query: 395 LVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
           LV+E+ +   L K L              FL         L + NG+ Y H+     ++H
Sbjct: 77  LVFEHLDQ-DLKKLLDVCEGGLESVTAKSFL---------LQLLNGIAYCHDR---RVLH 123
Query: 455 RDIRTNNIQLDSRFKAKIANFSLA 478
           RD++  N+ ++   + KIA+F LA
Sbjct: 124 RDLKPQNLLINREGELKIADFGLA 147

>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With A Sulfonamidopyrazine Piperidine Inhibitor Length = 274

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 43/190 (22%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           +K+++  E  ++Q++++  +V+++G+      +  LV E AE G L+K+L          
Sbjct: 51  LKDELLAEANVMQQLDNPYIVRMIGICEAE--SWMLVMEMAELGPLNKYLQQNRHVKDKN 108
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                      + +   V+ G++Y+ E    + VHRD+   N+ L ++  AKI++F L+ 
Sbjct: 109 I----------IELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSK 155
Query: 480 PATND--------------------------VMPKFDVFAFGVVLLELLS-GKKATRTTE 512
               D                             K DV++FGV++ E  S G+K  R  +
Sbjct: 156 ALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK 215
Query: 513 NGK-TAVLWK 521
             + TA+L K
Sbjct: 216 GSEVTAMLEK 225

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 24/164 (14%)
Query: 339 YSIGKSVY------RATIDGKVLAVKKI---------KEDVTEELRILQRINHANLVKLM 383
           Y+IG   Y      R   DGK+L  K++         K+ +  E+ +L+ + H N+V+  
Sbjct: 12  YTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYY 71
Query: 384 GVSSD-SQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQ 442
               D +    ++V EY E G L   +              +L     LRV   +   L+
Sbjct: 72  DRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQ------YLDEEFVLRVMTQLTLALK 125
Query: 443 YMHEHAQP--SIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND 484
             H  +    +++HRD++  N+ LD +   K+ +F LA    +D
Sbjct: 126 ECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHD 169

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 24/164 (14%)
Query: 339 YSIGKSVY------RATIDGKVLAVKKI---------KEDVTEELRILQRINHANLVKLM 383
           Y+IG   Y      R   DGK+L  K++         K+ +  E+ +L+ + H N+V+  
Sbjct: 12  YTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYY 71
Query: 384 GVSSD-SQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQ 442
               D +    ++V EY E G L   +              +L     LRV   +   L+
Sbjct: 72  DRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQ------YLDEEFVLRVMTQLTLALK 125
Query: 443 YMHEHAQP--SIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND 484
             H  +    +++HRD++  N+ LD +   K+ +F LA    +D
Sbjct: 126 ECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHD 169

>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836 Length = 273

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 43/190 (22%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           +K+++  E  ++Q++++  +V+++G+      +  LV E AE G L+K+L          
Sbjct: 49  LKDELLAEANVMQQLDNPYIVRMIGICEAE--SWMLVMEMAELGPLNKYLQQNRHVKDKN 106
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                      + +   V+ G++Y+ E    + VHRD+   N+ L ++  AKI++F L+ 
Sbjct: 107 I----------IELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSK 153
Query: 480 PATND--------------------------VMPKFDVFAFGVVLLELLS-GKKATRTTE 512
               D                             K DV++FGV++ E  S G+K  R  +
Sbjct: 154 ALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK 213
Query: 513 NGK-TAVLWK 521
             + TA+L K
Sbjct: 214 GSEVTAMLEK 223

>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 34/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           I+  +  EL++L   N   +V   G    S G   +  E+ + GSLD+ L          
Sbjct: 47  IRNQIIRELQVLHECNSPYIVGFYGAFY-SDGEISICMEHMDGGSLDQVLKKAGRIPEQI 105
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                       +V++ V  GL Y+ E  +  I+HRD++ +NI ++SR + K+ +F ++ 
Sbjct: 106 LG----------KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSG 153
Query: 480 PATNDVMPKF---------------------DVFAFGVVLLELLSGK 505
              + +   F                     D+++ G+ L+E+  G+
Sbjct: 154 QLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 341

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 34/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           I+  +  EL++L   N   +V   G    S G   +  E+ + GSLD+ L          
Sbjct: 47  IRNQIIRELQVLHECNSPYIVGFYGAFY-SDGEISICMEHMDGGSLDQVLKKAGRIPEQI 105
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                       +V++ V  GL Y+ E  +  I+HRD++ +NI ++SR + K+ +F ++ 
Sbjct: 106 LG----------KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSG 153
Query: 480 PATNDVMPKF---------------------DVFAFGVVLLELLSGK 505
              + +   F                     D+++ G+ L+E+  G+
Sbjct: 154 QLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 24/164 (14%)
Query: 339 YSIGKSVY------RATIDGKVLAVKKI---------KEDVTEELRILQRINHANLVKLM 383
           Y+IG   Y      R   DGK+L  K++         K+ +  E+ +L+ + H N+V+  
Sbjct: 12  YTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYY 71
Query: 384 GVSSD-SQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQ 442
               D +    ++V EY E G L   +              +L     LRV   +   L+
Sbjct: 72  DRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQ------YLDEEFVLRVMTQLTLALK 125
Query: 443 YMHEHAQP--SIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND 484
             H  +    +++HRD++  N+ LD +   K+ +F LA    +D
Sbjct: 126 ECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHD 169

>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex With Amp-Pnp Length = 344

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 19/127 (14%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT+ +  +  ++HA++V+L+G+   S     LV +Y   GSL   L             +
Sbjct: 80  VTDHMLAIGSLDHAHIVRLLGLCPGSSLQ--LVTQYLPLGSL---LDHVRQHRGALGPQL 134
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN 483
            L W       + +A G+ Y+ EH    +VHR++   N+ L S  + ++A+F +A     
Sbjct: 135 LLNW------GVQIAKGMYYLEEHG---MVHRNLAARNVLLKSPSQVQVADFGVA----- 180
Query: 484 DVMPKFD 490
           D++P  D
Sbjct: 181 DLLPPDD 187

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT E  ++ R++H   VKL     D +   F +  YA+NG L K++              
Sbjct: 84  VTRERDVMSRLDHPFFVKLYFCFQDDEKLYFGL-SYAKNGELLKYIRKIGS--------- 133
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---AP 480
           F     R   A ++ + L+Y+H      I+HRD++  NI L+     +I +F  A   +P
Sbjct: 134 FDETCTRFYTA-EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 189
Query: 481 ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
            +        V     V  ELL+ K A ++++
Sbjct: 190 ESKQARANXFVGTAQYVSPELLTEKSACKSSD 221

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 34/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           I+  +  EL++L   N   +V   G    S G   +  E+ + GSLD+ L          
Sbjct: 109 IRNQIIRELQVLHECNSPYIVGFYGAFY-SDGEISICMEHMDGGSLDQVLKKAGRIPEQI 167
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                       +V++ V  GL Y+ E  +  I+HRD++ +NI ++SR + K+ +F ++ 
Sbjct: 168 LG----------KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSG 215
Query: 480 PATNDVMPKF---------------------DVFAFGVVLLELLSGK 505
              + +   F                     D+++ G+ L+E+  G+
Sbjct: 216 QLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 262

>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp Length = 328

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 34/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           I+  +  EL++L   N   +V   G    S G   +  E+ + GSLD+ L          
Sbjct: 47  IRNQIIRELQVLHECNSPYIVGFYGAFY-SDGEISICMEHMDGGSLDQVLKKAGRIPEQI 105
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                       +V++ V  GL Y+ E  +  I+HRD++ +NI ++SR + K+ +F ++ 
Sbjct: 106 LG----------KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSG 153
Query: 480 PATNDVMPKF---------------------DVFAFGVVLLELLSGK 505
              + +   F                     D+++ G+ L+E+  G+
Sbjct: 154 QLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound Length = 322

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 34/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           I+  +  EL++L   N   +V   G    S G   +  E+ + GSLD+ L          
Sbjct: 47  IRNQIIRELQVLHECNSPYIVGFYGAFY-SDGEISICMEHMDGGSLDQVLKKAGRIPEQI 105
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                       +V++ V  GL Y+ E  +  I+HRD++ +NI ++SR + K+ +F ++ 
Sbjct: 106 LG----------KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSG 153
Query: 480 PATNDVMPKF---------------------DVFAFGVVLLELLSGK 505
              + +   F                     D+++ G+ L+E+  G+
Sbjct: 154 QLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase Domain Of The Human Epidermal Growth Factor Receptor 3 (Her3) Length = 325

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 19/127 (14%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT+ +  +  ++HA++V+L+G+   S     LV +Y   GSL   L             +
Sbjct: 62  VTDHMLAIGSLDHAHIVRLLGLCPGSSLQ--LVTQYLPLGSL---LDHVRQHRGALGPQL 116
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN 483
            L W       + +A G+ Y+ EH    +VHR++   N+ L S  + ++A+F +A     
Sbjct: 117 LLNW------GVQIAKGMYYLEEHG---MVHRNLAARNVLLKSPSQVQVADFGVA----- 162
Query: 484 DVMPKFD 490
           D++P  D
Sbjct: 163 DLLPPDD 169

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT E  ++ R++H   VKL     D +   F +  YA+NG L K++              
Sbjct: 82  VTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL-SYAKNGELLKYIRKIGS--------- 131
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---AP 480
           F     R   A ++ + L+Y+H      I+HRD++  NI L+     +I +F  A   +P
Sbjct: 132 FDETCTRFYTA-EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 187
Query: 481 ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
            +        V     V  ELL+ K A ++++
Sbjct: 188 ESKQARANXFVGTAQYVSPELLTEKSACKSSD 219

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT E  ++ R++H   VKL     D +   F +  YA+NG L K++              
Sbjct: 77  VTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL-SYAKNGELLKYIRKIGS--------- 126
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---AP 480
           F     R   A ++ + L+Y+H      I+HRD++  NI L+     +I +F  A   +P
Sbjct: 127 FDETCTRFYTA-EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 182
Query: 481 ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
            +        V     V  ELL+ K A ++++
Sbjct: 183 ESKQARANXFVGTAQYVSPELLTEKSACKSSD 214

>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 361 KEDVTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           KE +  EL+I+  +  H N+V L+G  +   G   ++ EY   G L  +L          
Sbjct: 85  KEALMSELKIMSHLGQHENIVNLLGACTHG-GPVLVITEYCCYGDLLNFLRRKAEADLDK 143
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                L     L  +  VA G+ ++   A  + +HRD+   N+ L +   AKI +F LA 
Sbjct: 144 EDGRPLELRDLLHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLAR 200
Query: 480 PATND 484
              ND
Sbjct: 201 DIMND 205

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 34/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           I+  +  EL++L   N   +V   G    S G   +  E+ + GSLD+ L          
Sbjct: 47  IRNQIIRELQVLHECNSPYIVGFYGAFY-SDGEISICMEHMDGGSLDQVLKKAGRIPEQI 105
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                       +V++ V  GL Y+ E  +  I+HRD++ +NI ++SR + K+ +F ++ 
Sbjct: 106 LG----------KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSG 153
Query: 480 PATNDVMPKF---------------------DVFAFGVVLLELLSGK 505
              + +   F                     D+++ G+ L+E+  G+
Sbjct: 154 QLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT E  ++ R++H   VKL     D +   F +  YA+NG L K++              
Sbjct: 77  VTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL-SYAKNGELLKYIRKIGS--------- 126
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---AP 480
           F     R   A ++ + L+Y+H      I+HRD++  NI L+     +I +F  A   +P
Sbjct: 127 FDETCTRFYTA-EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 182
Query: 481 ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
            +        V     V  ELL+ K A ++++
Sbjct: 183 ESKQARANXFVGTAQYVSPELLTEKSACKSSD 214

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT E  ++ R++H   VKL     D +   F +  YA+NG L K++              
Sbjct: 57  VTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL-SYAKNGELLKYIRKIGS--------- 106
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---AP 480
           F     R   A ++ + L+Y+H      I+HRD++  NI L+     +I +F  A   +P
Sbjct: 107 FDETCTRFYTA-EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 162
Query: 481 ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
            +        V     V  ELL+ K A ++++
Sbjct: 163 ESKQARANXFVGTAQYVSPELLTEKSACKSSD 194

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT E  ++ R++H   VKL     D +   F +  YA+NG L K++              
Sbjct: 79  VTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL-SYAKNGELLKYIRKIGS--------- 128
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---AP 480
           F     R   A ++ + L+Y+H      I+HRD++  NI L+     +I +F  A   +P
Sbjct: 129 FDETCTRFYTA-EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 184
Query: 481 ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
            +        V     V  ELL+ K A ++++
Sbjct: 185 ESKQARANXFVGTAQYVSPELLTEKSACKSSD 216

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 97/222 (43%), Gaps = 60/222 (27%)
Query: 328 IMESTMNLSEHYS----IGKSVY------RATIDGKVLAVKKI----------KEDVTEE 367
           +  ST   S+ Y     +GK  +      +  I G+  AVK I          KE +  E
Sbjct: 40  VQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLRE 99
Query: 368 LRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSL-DKWLHPXXXXXXXXXXVIFLT 426
           +++L++++H N++KL     D +G  +LV E    G L D+ +                +
Sbjct: 100 VQLLKQLDHPNIMKLYEFFED-KGYFYLVGEVYTGGELFDEIISRKR-----------FS 147
Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSL-----A 478
                R+   V +G+ YMH++    IVHRD++  N+ L+S+ K    +I +F L     A
Sbjct: 148 EVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEA 204
Query: 479 APATND-------VMP---------KFDVFAFGVVLLELLSG 504
           +    D       + P         K DV++ GV+L  LLSG
Sbjct: 205 SKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSG 246

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 97/222 (43%), Gaps = 60/222 (27%)
Query: 328 IMESTMNLSEHYS----IGKSVY------RATIDGKVLAVKKI----------KEDVTEE 367
           +  ST   S+ Y     +GK  +      +  I G+  AVK I          KE +  E
Sbjct: 17  VQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLRE 76
Query: 368 LRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSL-DKWLHPXXXXXXXXXXVIFLT 426
           +++L++++H N++KL     D +G  +LV E    G L D+ +                +
Sbjct: 77  VQLLKQLDHPNIMKLYEFFED-KGYFYLVGEVYTGGELFDEIISRKR-----------FS 124
Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSL-----A 478
                R+   V +G+ YMH++    IVHRD++  N+ L+S+ K    +I +F L     A
Sbjct: 125 EVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEA 181
Query: 479 APATND-------VMP---------KFDVFAFGVVLLELLSG 504
           +    D       + P         K DV++ GV+L  LLSG
Sbjct: 182 SKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSG 223

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT E  ++ R++H   VKL     D +   F +  YA+NG L K++              
Sbjct: 77  VTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL-SYAKNGELLKYIRKIGS--------- 126
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---AP 480
           F     R   A ++ + L+Y+H      I+HRD++  NI L+     +I +F  A   +P
Sbjct: 127 FDETCTRFYTA-EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 182
Query: 481 ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
            +        V     V  ELL+ K A ++++
Sbjct: 183 ESKQARANXFVGTAQYVSPELLTEKSACKSSD 214

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 34/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           I+  +  EL++L   N   +V   G    S G   +  E+ + GSLD+ L          
Sbjct: 66  IRNQIIRELQVLHECNSPYIVGFYGAFY-SDGEISICMEHMDGGSLDQVLKKAGRIPEQI 124
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                       +V++ V  GL Y+ E  +  I+HRD++ +NI ++SR + K+ +F ++ 
Sbjct: 125 LG----------KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSG 172
Query: 480 PATNDVMPKF---------------------DVFAFGVVLLELLSGK 505
              + +   F                     D+++ G+ L+E+  G+
Sbjct: 173 QLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 219

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 17/152 (11%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT E  ++ R++H   VKL     D +   F +  YA+NG L K++              
Sbjct: 79  VTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL-SYAKNGCLLKYIRKIGS--------- 128
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---AP 480
           F     R   A ++ + L+Y+H      I+HRD++  NI L+     +I +F  A   +P
Sbjct: 129 FDETCTRFYTA-EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 184
Query: 481 ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
            +        V     V  ELL+ K A+++++
Sbjct: 185 ESKQARANSFVGTAQYVSPELLTEKSASKSSD 216

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 97/222 (43%), Gaps = 60/222 (27%)
Query: 328 IMESTMNLSEHYS----IGKSVY------RATIDGKVLAVKKI----------KEDVTEE 367
           +  ST   S+ Y     +GK  +      +  I G+  AVK I          KE +  E
Sbjct: 41  VQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLRE 100
Query: 368 LRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSL-DKWLHPXXXXXXXXXXVIFLT 426
           +++L++++H N++KL     D +G  +LV E    G L D+ +                +
Sbjct: 101 VQLLKQLDHPNIMKLYEFFED-KGYFYLVGEVYTGGELFDEIISRKR-----------FS 148
Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSL-----A 478
                R+   V +G+ YMH++    IVHRD++  N+ L+S+ K    +I +F L     A
Sbjct: 149 EVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEA 205
Query: 479 APATND-------VMP---------KFDVFAFGVVLLELLSG 504
           +    D       + P         K DV++ GV+L  LLSG
Sbjct: 206 SKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSG 247

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT E  ++ R++H   VKL     D +   F +  YA+NG L K++              
Sbjct: 79  VTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL-SYAKNGELLKYIRKIGS--------- 128
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---AP 480
           F     R   A ++ + L+Y+H      I+HRD++  NI L+     +I +F  A   +P
Sbjct: 129 FDETCTRFYTA-EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 184
Query: 481 ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
            +        V     V  ELL+ K A ++++
Sbjct: 185 ESKQARANXFVGTAQYVSPELLTEKSACKSSD 216

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT E  ++ R++H   VKL     D +   F +  YA+NG L K++              
Sbjct: 79  VTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL-SYAKNGELLKYIRKIGS--------- 128
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---AP 480
           F     R   A ++ + L+Y+H      I+HRD++  NI L+     +I +F  A   +P
Sbjct: 129 FDETCTRFYTA-EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 184
Query: 481 ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
            +        V     V  ELL+ K A ++++
Sbjct: 185 ESKQARANXFVGTAQYVSPELLTEKSACKSSD 216

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT E  ++ R++H   VKL     D +   F +  YA+NG L K++              
Sbjct: 80  VTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL-SYAKNGELLKYIRKIGS--------- 129
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---AP 480
           F     R   A ++ + L+Y+H      I+HRD++  NI L+     +I +F  A   +P
Sbjct: 130 FDETCTRFYTA-EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 185
Query: 481 ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
            +        V     V  ELL+ K A ++++
Sbjct: 186 ESKQARANXFVGTAQYVSPELLTEKSACKSSD 217

>pdb|3H9R|A Chain A, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 330

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 63/217 (29%)
Query: 345 VYRATIDGKVLAVKKIK-EDVTEELRILQRIN-----HANLVKLMG---VSSDSQGNRFL 395
           V+R +  G+ +AVK     D     R  +  N     H N++  +     S  S    +L
Sbjct: 53  VWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWL 112
Query: 396 VYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMH-----EHAQP 450
           +  Y E GSL  +L            +  L     LR+ L +A+GL ++H        +P
Sbjct: 113 ITHYHEMGSLYDYLQ-----------LTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP 161
Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSLA---APATN------------------------ 483
           +I HRD+++ NI +    +  IA+  LA   + +TN                        
Sbjct: 162 AIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDET 221
Query: 484 ------DVMPKFDVFAFGVVLLELLSGKKATRTTENG 514
                 D   + D++AFG+VL E+     A R   NG
Sbjct: 222 IQVDCFDSYKRVDIWAFGLVLWEV-----ARRMVSNG 253

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT E  ++ R++H   VKL     D +   F +  YA+NG L K++              
Sbjct: 79  VTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL-SYAKNGELLKYIRKIGS--------- 128
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---AP 480
           F     R   A ++ + L+Y+H      I+HRD++  NI L+     +I +F  A   +P
Sbjct: 129 FDETCTRFYTA-EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 184
Query: 481 ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
            +        V     V  ELL+ K A ++++
Sbjct: 185 ESKQARANXFVGTAQYVSPELLTEKSACKSSD 216

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT E  ++ R++H   VKL     D +   F +  YA+NG L K++              
Sbjct: 76  VTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL-SYAKNGELLKYIRKIGS--------- 125
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---AP 480
           F     R   A ++ + L+Y+H      I+HRD++  NI L+     +I +F  A   +P
Sbjct: 126 FDETCTRFYTA-EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 181
Query: 481 ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
            +        V     V  ELL+ K A ++++
Sbjct: 182 ESKQARANXFVGTAQYVSPELLTEKSACKSSD 213

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT E  ++ R++H   VKL     D +   F +  YA+NG L K++              
Sbjct: 56  VTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL-SYAKNGELLKYIRKIGS--------- 105
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---AP 480
           F     R   A ++ + L+Y+H      I+HRD++  NI L+     +I +F  A   +P
Sbjct: 106 FDETCTRFYTA-EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 161
Query: 481 ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
            +        V     V  ELL+ K A ++++
Sbjct: 162 ESKQARANXFVGTAQYVSPELLTEKSACKSSD 193

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 58/196 (29%)
Query: 347 RATIDGKVLAVKKIKEDVT--------EELRILQRINHANLVKLMGVSSDSQGNRFLVYE 398
           R   D  ++AVK  +E +         +E RIL++ +H N+V+L+GV +  Q   ++V E
Sbjct: 134 RLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQ-PIYIVME 192
Query: 399 YAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL------DVANGLQYMHEHAQPSI 452
             + G    +L                T   RLRV        D A G++Y+        
Sbjct: 193 LVQGGDFLTFLR---------------TEGARLRVKTLLQMVGDAAAGMEYLESKC---C 234
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMP------------------------- 487
           +HRD+   N  +  +   KI++F ++    + V                           
Sbjct: 235 IHRDLAARNCLVTEKNVLKISDFGMSREEADGVXAASGGLRQVPVKWTAPEALNYGRYSS 294
Query: 488 KFDVFAFGVVLLELLS 503
           + DV++FG++L E  S
Sbjct: 295 ESDVWSFGILLWETFS 310

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT E  ++ R++H   VKL     D +   F +  YA+NG L K++              
Sbjct: 55  VTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL-SYAKNGELLKYIRKIGS--------- 104
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---AP 480
           F     R   A ++ + L+Y+H      I+HRD++  NI L+     +I +F  A   +P
Sbjct: 105 FDETCTRFYTA-EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 160
Query: 481 ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
            +        V     V  ELL+ K A ++++
Sbjct: 161 ESKQARANXFVGTAQYVSPELLTEKSACKSSD 192

>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 361 KEDVTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           KE +  EL+I+  +  H N+V L+G  +   G   ++ EY   G L  +L          
Sbjct: 93  KEALMSELKIMSHLGQHENIVNLLGACTHG-GPVLVITEYCCYGDLLNFLRRKAEADLDK 151
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                L     L  +  VA G+ ++   A  + +HRD+   N+ L +   AKI +F LA 
Sbjct: 152 EDGRPLELRDLLHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLAR 208
Query: 480 PATND 484
              ND
Sbjct: 209 DIMND 213

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 34/167 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           I+  +  EL++L   N   +V   G    S G   +  E+ + GSLD+ L          
Sbjct: 74  IRNQIIRELQVLHECNSPYIVGFYGAFY-SDGEISICMEHMDGGSLDQVLKKAGRIPEQI 132
Query: 420 XXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                       +V++ V  GL Y+ E  +  I+HRD++ +NI ++SR + K+ +F ++ 
Sbjct: 133 LG----------KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSG 180
Query: 480 PATNDVMPKF---------------------DVFAFGVVLLELLSGK 505
              + +   F                     D+++ G+ L+E+  G+
Sbjct: 181 QLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 227

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT E  ++ R++H   VKL     D +   F +  YA+NG L K++              
Sbjct: 54  VTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL-SYAKNGELLKYIRKIGS--------- 103
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---AP 480
           F     R   A ++ + L+Y+H      I+HRD++  NI L+     +I +F  A   +P
Sbjct: 104 FDETCTRFYTA-EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 159
Query: 481 ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
            +        V     V  ELL+ K A ++++
Sbjct: 160 ESKQARANXFVGTAQYVSPELLTEKSACKSSD 191

>pdb|4DYM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex With The Imidazo[1,2-B]pyridazine Inhibitor K00135 Length = 301

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 63/217 (29%)
Query: 345 VYRATIDGKVLAVKKIK-EDVTEELRILQRIN-----HANLVKLMG---VSSDSQGNRFL 395
           V+R +  G+ +AVK     D     R  +  N     H N++  +     S  S    +L
Sbjct: 24  VWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWL 83
Query: 396 VYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMH-----EHAQP 450
           +  Y E GSL  +L            +  L     LR+ L +A+GL ++H        +P
Sbjct: 84  ITHYHEMGSLYDYLQ-----------LTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP 132
Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSLA---APATN------------------------ 483
           +I HRD+++ NI +    +  IA+  LA   + +TN                        
Sbjct: 133 AIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDET 192
Query: 484 ------DVMPKFDVFAFGVVLLELLSGKKATRTTENG 514
                 D   + D++AFG+VL E+     A R   NG
Sbjct: 193 IQVDCFDSYKRVDIWAFGLVLWEV-----ARRMVSNG 224

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 58/196 (29%)
Query: 347 RATIDGKVLAVKKIKEDVT--------EELRILQRINHANLVKLMGVSSDSQGNRFLVYE 398
           R   D  ++AVK  +E +         +E RIL++ +H N+V+L+GV +  Q   ++V E
Sbjct: 134 RLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQ-PIYIVME 192
Query: 399 YAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVAL------DVANGLQYMHEHAQPSI 452
             + G    +L                T   RLRV        D A G++Y+        
Sbjct: 193 LVQGGDFLTFLR---------------TEGARLRVKTLLQMVGDAAAGMEYLESKC---C 234
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMP------------------------- 487
           +HRD+   N  +  +   KI++F ++    + V                           
Sbjct: 235 IHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSS 294
Query: 488 KFDVFAFGVVLLELLS 503
           + DV++FG++L E  S
Sbjct: 295 ESDVWSFGILLWETFS 310

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT E  ++ R++H   VKL     D +   F +  YA+NG L K++              
Sbjct: 61  VTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL-SYAKNGELLKYIRKIGS--------- 110
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---AP 480
           F     R   A ++ + L+Y+H      I+HRD++  NI L+     +I +F  A   +P
Sbjct: 111 FDETCTRFYTA-EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 166
Query: 481 ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
            +        V     V  ELL+ K A ++++
Sbjct: 167 ESKQARANXFVGTAQYVSPELLTEKSACKSSD 198

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT E  ++ R++H   VKL     D +   F +  YA+NG L K++              
Sbjct: 77  VTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL-SYAKNGELLKYIRKIGS--------- 126
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---AP 480
           F     R   A ++ + L+Y+H      I+HRD++  NI L+     +I +F  A   +P
Sbjct: 127 FDETCTRFYTA-EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 182
Query: 481 ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
            +        V     V  ELL+ K A ++++
Sbjct: 183 ESKQARANAFVGTAQYVSPELLTEKSACKSSD 214

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT E  ++ R++H   VKL     D +   F +  YA+NG L K++              
Sbjct: 79  VTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL-SYAKNGELLKYIRKIGS--------- 128
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---AP 480
           F     R   A ++ + L+Y+H      I+HRD++  NI L+     +I +F  A   +P
Sbjct: 129 FDETCTRFYTA-EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 184
Query: 481 ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
            +        V     V  ELL+ K A ++++
Sbjct: 185 ESKQARANXFVGTAQYVSPELLTEKSAXKSSD 216

>pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2- Aminopyridine Inhibitor Length = 301

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 63/217 (29%)
Query: 345 VYRATIDGKVLAVKKIK-EDVTEELRILQRIN-----HANLVKLMG---VSSDSQGNRFL 395
           V+R +  G+ +AVK     D     R  +  N     H N++  +     S  S    +L
Sbjct: 24  VWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWL 83
Query: 396 VYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMH-----EHAQP 450
           +  Y E GSL  +L            +  L     LR+ L +A+GL ++H        +P
Sbjct: 84  ITHYHEMGSLYDYLQ-----------LTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP 132
Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSLA---APATN------------------------ 483
           +I HRD+++ NI +    +  IA+  LA   + +TN                        
Sbjct: 133 AIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDET 192
Query: 484 ------DVMPKFDVFAFGVVLLELLSGKKATRTTENG 514
                 D   + D++AFG+VL E+     A R   NG
Sbjct: 193 IQVDCFDSYKRVDIWAFGLVLWEV-----ARRMVSNG 224

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT E  ++ R++H   VKL     D +   F +  YA+NG L K++              
Sbjct: 80  VTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL-SYAKNGELLKYIRKIGS--------- 129
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---AP 480
           F     R   A ++ + L+Y+H      I+HRD++  NI L+     +I +F  A   +P
Sbjct: 130 FDETCTRFYTA-EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 185
Query: 481 ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
            +        V     V  ELL+ K A ++++
Sbjct: 186 ESKQARANSFVGTAQYVSPELLTEKSACKSSD 217

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 51/187 (27%)
Query: 352 GKVLAVKKI-------KEDVTEELRILQRINHANLVKLMGVSSDSQGNR-FLVYEYAENG 403
           GK +AVKK+       +E +  E+ I++  +H N+V +   SS   G+  ++V E+ E G
Sbjct: 70  GKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHDNVVDMY--SSYLVGDELWVVMEFLEGG 127
Query: 404 SL-DKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNI 462
           +L D   H              +   Q   V L V   L Y+H      ++HRDI++++I
Sbjct: 128 ALTDIVTHTR------------MNEEQIATVCLSVLRALSYLHNQG---VIHRDIKSDSI 172
Query: 463 QLDSRFKAKIANFSLAAPATNDVMPK------------------------FDVFAFGVVL 498
            L S  + K+++F   A  + +V PK                         D+++ G+++
Sbjct: 173 LLTSDGRIKLSDFGFCAQVSKEV-PKRKXLVGTPYWMAPEVISRLPYGTEVDIWSLGIMV 231
Query: 499 LELLSGK 505
           +E++ G+
Sbjct: 232 IEMIDGE 238

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVI 423
           VT E  ++ R++H   VKL     D +   F +  YA+NG L K++              
Sbjct: 76  VTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL-SYAKNGELLKYIRKIGS--------- 125
Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---AP 480
           F     R   A ++ + L+Y+H      I+HRD++  NI L+     +I +F  A   +P
Sbjct: 126 FDETCTRFYTA-EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSP 181
Query: 481 ATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
            +        V     V  ELL+ K A ++++
Sbjct: 182 ESKQARANSFVGTAQYVSPELLTEKSACKSSD 213

>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain Kinase Loc340156. Length = 373

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 37/170 (21%)
Query: 359 KIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXX 418
           K KE+V  E+ ++ +++HANL++L   + +S+ +  LV EY + G L   +         
Sbjct: 128 KDKEEVKNEISVMNQLDHANLIQLYD-AFESKNDIVLVMEYVDGGELFDRIIDESYNLTE 186
Query: 419 XXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR--FKAKIANFS 476
              ++F+           +  G+++MH   Q  I+H D++  NI   +R   + KI +F 
Sbjct: 187 LDTILFMK---------QICEGIRHMH---QMYILHLDLKPENILCVNRDAKQIKIIDFG 234
Query: 477 LAAP-------ATNDVMPKF---------------DVFAFGVVLLELLSG 504
           LA           N   P+F               D+++ GV+   LLSG
Sbjct: 235 LARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSG 284

>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 Length = 331

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 31/152 (20%)
Query: 343 KSVYRATIDGKVLAVKKI-----KED----VTEELRILQRINHANLVKLMGVS------- 386
           K+ +R T  G+ +A+KK+     KE        E++ILQ + H N+V L+ +        
Sbjct: 36  KARHRKT--GQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPY 93
Query: 387 SDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHE 446
           +  +G+ +LV+++ E+                   ++  T S+  RV   + NGL Y+H 
Sbjct: 94  NRCKGSIYLVFDFCEHD----------LAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHR 143
Query: 447 HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
           +    I+HRD++  N+ +      K+A+F LA
Sbjct: 144 N---KILHRDMKAANVLITRDGVLKLADFGLA 172

>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 31/155 (20%)
Query: 340 SIGKSVYRATIDGKVLAVKKI-----KED----VTEELRILQRINHANLVKLMGVS---- 386
            + K+ +R T  G+ +A+KK+     KE        E++ILQ + H N+V L+ +     
Sbjct: 32  EVFKARHRKT--GQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKA 89
Query: 387 ---SDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQY 443
              +  +G+ +LV+++ E+                   ++  T S+  RV   + NGL Y
Sbjct: 90  SPYNRCKGSIYLVFDFCEHD----------LAGLLSNVLVKFTLSEIKRVMQMLLNGLYY 139
Query: 444 MHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
           +H +    I+HRD++  N+ +      K+A+F LA
Sbjct: 140 IHRN---KILHRDMKAANVLITRDGVLKLADFGLA 171

>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And Drb Length = 373

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 31/154 (20%)
Query: 341 IGKSVYRATIDGKVLAVKKI-----KED----VTEELRILQRINHANLVKLMGVS----- 386
           + K+ +R T  G+ +A+KK+     KE        E++ILQ + H N+V L+ +      
Sbjct: 34  VFKARHRKT--GQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKAS 91
Query: 387 --SDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYM 444
             +  +G+ +LV+++ E+                   ++  T S+  RV   + NGL Y+
Sbjct: 92  PYNRCKGSIYLVFDFCEHD----------LAGLLSNVLVKFTLSEIKRVMQMLLNGLYYI 141
Query: 445 HEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
           H +    I+HRD++  N+ +      K+A+F LA
Sbjct: 142 HRN---KILHRDMKAANVLITRDGVLKLADFGLA 172

>pdb|4EBY|A Chain A, Crystal Structure Of The Ectodomain Of A Receptor Like Kinase Length = 212

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 90  LLVPIICGCTGNQYFA-NITYQIKKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQI 148
           +LVP  C C    +   N +Y +++ D+Y  V+I+++ NLT   ++   NP    N + +
Sbjct: 61  VLVPFPCECQPGDFLGHNFSYSVRQEDTYERVAISNYANLTTMESLQARNPFPATN-IPL 119
Query: 149 GVKVTFPLFCKCPSKTNMED-GIENLITYVWQPGDDVSQVGAKLNASSAAIETENEYRNF 207
              +   + C C  ++  +D G+   +TY  +P D +S +      S+  ++  N   NF
Sbjct: 120 SATLNVLVNCSCGDESVSKDFGL--FVTYPLRPEDSLSSIARSSGVSADILQRYNPGVNF 177
Query: 208 SEA 210
           +  
Sbjct: 178 NSG 180

>pdb|3MY0|A Chain A, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound To Ldn- 193189 Length = 305

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 83/217 (38%), Gaps = 63/217 (29%)
Query: 345 VYRATIDGKVLAVK----KIKEDVTEELRILQRI--NHANLVKLMG---VSSDSQGNRFL 395
           V+R    G+ +AVK    + ++    E  I   +   H N++  +     S +S    +L
Sbjct: 24  VWRGLWHGESVAVKIFSSRDEQSWFRETEIYNTVLLRHDNILGFIASDMTSRNSSTQLWL 83
Query: 396 VYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMH-----EHAQP 450
           +  Y E+GSL  +L                     LR+A+  A GL ++H        +P
Sbjct: 84  ITHYHEHGSLYDFLQRQTLEPHLA-----------LRLAVSAACGLAHLHVEIFGTQGKP 132
Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSLA------------------------APATNDVM 486
           +I HRD ++ N+ + S  +  IA+  LA                        AP   D  
Sbjct: 133 AIAHRDFKSRNVLVKSNLQCCIADLGLAVMHSQGSDYLDIGNNPRVGTKRYMAPEVLDEQ 192
Query: 487 PKFDVF---------AFGVVLLELLSGKKATRTTENG 514
            + D F         AFG+VL E+     A RT  NG
Sbjct: 193 IRTDCFESYKWTDIWAFGLVLWEI-----ARRTIVNG 224

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 91/233 (39%), Gaps = 54/233 (23%)
Query: 312 GVSGYLGKPIVYEIEVIMESTMNLSEHYSIGK----SVY--RATIDGKVLAVKKIK---- 361
           G +G L  P V E+    +     S+   IG     +VY  R   + +V+A+KK+     
Sbjct: 33  GRAGSLKDPDVAELFFKDDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGK 92
Query: 362 ------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW-LHPXXX 414
                 +D+ +E+R LQ++ H N ++  G     +   +LV EY    + D   +H    
Sbjct: 93  QSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYL-REHTAWLVMEYCLGSASDLLEVHKKPL 151
Query: 415 XXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIAN 474
                  V                 GL Y+H H   +++HRD++  NI L      K+ +
Sbjct: 152 QEVEIAAVTH-----------GALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGD 197
Query: 475 F---SLAAPATNDVMP-------------------KFDVFAFGVVLLELLSGK 505
           F   S+ APA   V                     K DV++ G+  +EL   K
Sbjct: 198 FGSASIMAPANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERK 250

>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 22/153 (14%)
Query: 340 SIGKSVYRATIDGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQG 391
           S+ + VYR       +A+K +K        E++  E +I+ ++++  +V+L+GV      
Sbjct: 25  SVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEA- 83
Query: 392 NRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPS 451
              LV E A  G L K+L               L           V+ G++Y+ E    +
Sbjct: 84  -LMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLH---------QVSMGMKYLEEK---N 130
Query: 452 IVHRDIRTNNIQLDSRFKAKIANFSLAAPATND 484
            VHRD+   N+ L +R  AKI++F L+     D
Sbjct: 131 FVHRDLAARNVLLVNRHYAKISDFGLSKALGAD 163

>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 35/171 (20%)
Query: 355 LAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXX 414
           L  + ++  +  E+ I   + H N++++     D +   +L+ E+A  G L K L     
Sbjct: 52  LEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRK-RIYLMLEFAPRGELYKELQ-KHG 109
Query: 415 XXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIAN 474
                    F+          ++A+ L Y HE     ++HRDI+  N+ +  + + KIA+
Sbjct: 110 RFDEQRSATFME---------ELADALHYCHER---KVIHRDIKPENLLMGYKGELKIAD 157
Query: 475 F--SLAAPA--------TNDVMP-----------KFDVFAFGVVLLELLSG 504
           F  S+ AP+        T D +P           K D++  GV+  E L G
Sbjct: 158 FGWSVHAPSLRRRXMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVG 208

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 32/151 (21%)
Query: 347 RATIDGKVLAVKKIKED------VTEELRILQRINHA-------------NLVKLMGVSS 387
           R  +D +  A+KKI+        +  E+ +L  +NH              N VK M  + 
Sbjct: 26  RNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPM-TAV 84
Query: 388 DSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEH 447
             +   F+  EY ENG+L   +H                  +  R+   +   L Y+H  
Sbjct: 85  KKKSTLFIQMEYCENGTLYDLIHSENLNQQR---------DEYWRLFRQILEALSYIHSQ 135
Query: 448 AQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
               I+HRD++  NI +D     KI +F LA
Sbjct: 136 G---IIHRDLKPMNIFIDESRNVKIGDFGLA 163

>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439 Length = 285

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 35/171 (20%)
Query: 355 LAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXX 414
           L  + ++  +  E+ I   + H N++++     D +   +L+ E+A  G L K L     
Sbjct: 53  LEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRK-RIYLMLEFAPRGELYKELQ-KHG 110
Query: 415 XXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIAN 474
                    F+          ++A+ L Y HE     ++HRDI+  N+ +  + + KIA+
Sbjct: 111 RFDEQRSATFME---------ELADALHYCHER---KVIHRDIKPENLLMGYKGELKIAD 158
Query: 475 F--SLAAPA--------TNDVMP-----------KFDVFAFGVVLLELLSG 504
           F  S+ AP+        T D +P           K D++  GV+  E L G
Sbjct: 159 FGWSVHAPSLRRRXMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVG 209

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 95/233 (40%), Gaps = 46/233 (19%)
Query: 304 LAQNKLLPGVSGYLGKPIVYEIEVIMESTMNLSEHYSIGK--SVYRATIDGKV-LAVKKI 360
           L Q   +P +S    KP   +   I   ++ L +    G+   V+ AT +    +AVK +
Sbjct: 161 LCQKLSVPCMSSKPQKPWEKDAWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTM 220
Query: 361 K------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXX 414
           K      E    E  +++ + H  LVKL  V +      +++ E+   GSL  +L     
Sbjct: 221 KPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEP--IYIITEFMAKGSLLDFLKSDEG 278
Query: 415 XXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIAN 474
                  +I  +          +A G+ ++    Q + +HRD+R  NI + +    KIA+
Sbjct: 279 SKQPLPKLIDFS--------AQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIAD 327
Query: 475 FSLA---------------------APAT---NDVMPKFDVFAFGVVLLELLS 503
           F LA                     AP          K DV++FG++L+E+++
Sbjct: 328 FGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVT 380

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 85/200 (42%), Gaps = 51/200 (25%)
Query: 344 SVYRA--TIDGKVLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNR 393
           +VY+      G  +A+K++K D  E        E+ +++ + H N+V+L  V   ++   
Sbjct: 20  TVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIH-TENKL 78
Query: 394 FLVYEYAENGSLDKWLHPXXXXXX----XXXXVIFLTWSQRLRVALDVANGLQYMHEHAQ 449
            LV+E+ +N  L K++                V +  W         +  GL + HE+  
Sbjct: 79  TLVFEFMDN-DLKKYMDSRTVGNTPRGLELNLVKYFQWQ--------LLQGLAFCHEN-- 127
Query: 450 PSIVHRDIRTNNIQLDSRFKAKIANFSLA--------------------AP----ATNDV 485
             I+HRD++  N+ ++ R + K+ +F LA                    AP     +   
Sbjct: 128 -KILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTY 186
Query: 486 MPKFDVFAFGVVLLELLSGK 505
               D+++ G +L E+++GK
Sbjct: 187 STSIDIWSCGCILAEMITGK 206

>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 40/190 (21%)
Query: 353 KVLAVKKI-KEDVTEELR----ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK 407
           KVL   +I KE V  +LR    I   ++H N+++L     D +   +L+ EYA  G L K
Sbjct: 54  KVLFKSQIEKEGVEHQLRREIEIQAHLHHPNILRLYNYFYDRR-RIYLILEYAPRGELYK 112
Query: 408 WLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR 467
            L             I            ++A+ L Y H      ++HRDI+  N+ L  +
Sbjct: 113 ELQKSCTFDEQRTATIME----------ELADALMYCH---GKKVIHRDIKPENLLLGLK 159
Query: 468 FKAKIANF--SLAAPA--------TNDVMP-----------KFDVFAFGVVLLELLSGKK 506
            + KIA+F  S+ AP+        T D +P           K D++  GV+  ELL G  
Sbjct: 160 GELKIADFGWSVHAPSLRRKTMCGTLDYLPPEMIEGRMHNEKVDLWCIGVLCYELLVGNP 219
Query: 507 ATRTTENGKT 516
              +  + +T
Sbjct: 220 PFESASHNET 229

>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a Resolution. Length = 322

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 67/148 (45%), Gaps = 13/148 (8%)
Query: 338 HYSIGKSVYRATIDGKVLAVKKIKEDVTEELRI--------LQRINHANLVKLMGVSSDS 389
           +  + K V +   + +V A+K + E  +   RI        ++  N  ++V+L+GV S  
Sbjct: 42  YEGVAKGVVKDEPETRV-AIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG 100
Query: 390 QGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQ 449
           Q    ++ E    G L  +L            +   + S+ +++A ++A+G+ Y++ +  
Sbjct: 101 QPT-LVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN-- 157
Query: 450 PSIVHRDIRTNNIQLDSRFKAKIANFSL 477
              VHRD+   N  +   F  KI +F +
Sbjct: 158 -KFVHRDLAARNCMVAEDFTVKIGDFGM 184

>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded Form) Length = 325

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXX 421
           ED   E+ IL   +H N+VKL+      + N +++ E+   G++D  +            
Sbjct: 79  EDYMVEIDILASCDHPNIVKLLDAFY-YENNLWILIEFCAGGAVDAVMLELERP------ 131
Query: 422 VIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA 481
              LT SQ   V     + L Y+H++    I+HRD++  NI        K+A+F ++A  
Sbjct: 132 ---LTESQIQVVCKQTLDALNYLHDN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKN 185
Query: 482 TNDV 485
           T  +
Sbjct: 186 TRXI 189

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 38/163 (23%)
Query: 366 EELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFL 425
           +E+ +L++++H N++KL     D + N +LV E    G L   +            VI  
Sbjct: 70  DEVAVLKQLDHPNIMKLYEFFEDKR-NYYLVMEVYRGGELFDEIILRQKFSEVDAAVIMK 128
Query: 426 TWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSLAA--- 479
                      V +G  Y+H+H   +IVHRD++  N+ L+S+ +    KI +F L+A   
Sbjct: 129 Q----------VLSGTTYLHKH---NIVHRDLKPENLLLESKSRDALIKIVDFGLSAHFE 175
Query: 480 ---------PATNDVMP---------KFDVFAFGVVLLELLSG 504
                         + P         K DV++ GV+L  LL G
Sbjct: 176 VGGKMKERLGTAYYIAPEVLRKKYDEKCDVWSCGVILYILLCG 218

>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5- Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXX 421
           ED   E+ IL   +H N+VKL+      + N +++ E+   G++D  +            
Sbjct: 79  EDYMVEIDILASCDHPNIVKLLDAFY-YENNLWILIEFCAGGAVDAVMLELERP------ 131
Query: 422 VIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA 481
              LT SQ   V     + L Y+H++    I+HRD++  NI        K+A+F ++A  
Sbjct: 132 ---LTESQIQVVCKQTLDALNYLHDN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKN 185
Query: 482 TNDV 485
           T  +
Sbjct: 186 TRTI 189

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 31/164 (18%)
Query: 329 MESTMNLSEHYSIGKSVYRATIDGK------VLAVKKIKEDVTE--------ELRILQRI 374
           ME+ + L +   +G+  Y     GK      ++A+K+I+ +  E        E+ +L+ +
Sbjct: 1   METYIKLDK---LGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDL 57
Query: 375 NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVA 434
            HAN+V L  +   ++ +  LV+EY +   L ++L             +FL   Q LR  
Sbjct: 58  KHANIVTLHDIIH-TEKSLTLVFEYLDK-DLKQYLDDCGNIINMHNVKLFLF--QLLR-- 111
Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
                GL Y H   +  ++HRD++  N+ ++ R + K+A+F LA
Sbjct: 112 -----GLAYCH---RQKVLHRDLKPQNLLINERGELKLADFGLA 147

>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase ( Diphosphorylated Form) Bound To 5- Amino-3-((4-( Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXX 421
           ED   E+ IL   +H N+VKL+      + N +++ E+   G++D  +            
Sbjct: 79  EDYMVEIDILASCDHPNIVKLLDAFY-YENNLWILIEFCAGGAVDAVMLELERP------ 131
Query: 422 VIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA 481
              LT SQ   V     + L Y+H++    I+HRD++  NI        K+A+F ++A  
Sbjct: 132 ---LTESQIQVVCKQTLDALNYLHDN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKN 185
Query: 482 TNDV 485
           T  +
Sbjct: 186 TRXI 189

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 25/150 (16%)
Query: 336 SEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNR-- 393
           S H+   KSV R     + L +  ++E     LR L+   H N+V+LM V + S+ +R  
Sbjct: 28  SGHFVALKSV-RVPNGEEGLPISTVRE--VALLRRLEAFEHPNVVRLMDVCATSRTDREI 84
Query: 394 --FLVYEYAENG---SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHA 448
              LV+E+ +      LDK   P          +      Q LR       GL ++H + 
Sbjct: 85  KVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLM-----RQFLR-------GLDFLHANC 132
Query: 449 QPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
              IVHRD++  NI + S    K+A+F LA
Sbjct: 133 ---IVHRDLKPENILVTSGGTVKLADFGLA 159

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 25/150 (16%)
Query: 336 SEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNR-- 393
           S H+   KSV R     + L +  ++E     LR L+   H N+V+LM V + S+ +R  
Sbjct: 28  SGHFVALKSV-RVPNGEEGLPISTVRE--VALLRRLEAFEHPNVVRLMDVCATSRTDREI 84
Query: 394 --FLVYEYAENG---SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHA 448
              LV+E+ +      LDK   P          +      Q LR       GL ++H + 
Sbjct: 85  KVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLM-----RQFLR-------GLDFLHANC 132
Query: 449 QPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
              IVHRD++  NI + S    K+A+F LA
Sbjct: 133 ---IVHRDLKPENILVTSGGTVKLADFGLA 159

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 25/150 (16%)
Query: 336 SEHYSIGKSVYRATIDGKVLAVKKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNR-- 393
           S H+   KSV R     + L +  ++E     LR L+   H N+V+LM V + S+ +R  
Sbjct: 28  SGHFVALKSV-RVPNGEEGLPISTVRE--VALLRRLEAFEHPNVVRLMDVCATSRTDREI 84
Query: 394 --FLVYEYAENG---SLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHA 448
              LV+E+ +      LDK   P          +      Q LR       GL ++H + 
Sbjct: 85  KVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLM-----RQFLR-------GLDFLHANC 132
Query: 449 QPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
              IVHRD++  NI + S    K+A+F LA
Sbjct: 133 ---IVHRDLKPENILVTSGGTVKLADFGLA 159

>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth Factor-1 Receptor Kinase Domain Length = 322

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 67/148 (45%), Gaps = 13/148 (8%)
Query: 338 HYSIGKSVYRATIDGKVLAVKKIKEDVTEELRI--------LQRINHANLVKLMGVSSDS 389
           +  + K V +   + +V A+K + E  +   RI        ++  N  ++V+L+GV S  
Sbjct: 42  YEGVAKGVVKDEPETRV-AIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG 100
Query: 390 QGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQ 449
           Q    ++ E    G L  +L            +   + S+ +++A ++A+G+ Y++ +  
Sbjct: 101 QPT-LVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNAN-- 157
Query: 450 PSIVHRDIRTNNIQLDSRFKAKIANFSL 477
              VHRD+   N  +   F  KI +F +
Sbjct: 158 -KFVHRDLAARNCMVAEDFTVKIGDFGM 184

>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1 Length = 304

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLT 426
           E  +++  N  ++V+L+GV S  Q    ++ E    G L  +L            +   +
Sbjct: 68  EASVMKEFNCHHVVRLLGVVSQGQPT-LVIMELMTRGDLKSYLRSLRPAMANNPVLAPPS 126
Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSL 477
            S+ +++A ++A+G+ Y++ +     VHRD+   N  +   F  KI +F +
Sbjct: 127 LSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGM 174

>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor Kinase Length = 299

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 67/148 (45%), Gaps = 13/148 (8%)
Query: 338 HYSIGKSVYRATIDGKVLAVKKIKEDVTEELRI--------LQRINHANLVKLMGVSSDS 389
           +  + K V +   + +V A+K + E  +   RI        ++  N  ++V+L+GV S  
Sbjct: 27  YEGVAKGVVKDEPETRV-AIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG 85
Query: 390 QGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQ 449
           Q    ++ E    G L  +L            +   + S+ +++A ++A+G+ Y++ +  
Sbjct: 86  QPT-LVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNAN-- 142
Query: 450 PSIVHRDIRTNNIQLDSRFKAKIANFSL 477
              VHRD+   N  +   F  KI +F +
Sbjct: 143 -KFVHRDLAARNCMVAEDFTVKIGDFGM 169

>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A Pyrimidinopyridone Inhibitor Length = 333

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 9/129 (6%)
Query: 361 KEDVTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           KE +  EL+I+  +  H N+V L+G  +   G   ++ EY   G L  +L          
Sbjct: 93  KEALMSELKIMSHLGQHENIVNLLGACTHG-GPVLVITEYCCYGDLLNFLRRKSRVLETD 151
Query: 420 XXVIFL--TWSQR--LRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF 475
                   T S R  L  +  VA G+ ++   A  + +HRD+   N+ L +   AKI +F
Sbjct: 152 PAFAIANSTLSTRDLLHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDF 208
Query: 476 SLAAPATND 484
            LA    ND
Sbjct: 209 GLARDIMND 217

>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 331

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 31/155 (20%)
Query: 340 SIGKSVYRATIDGKVLAVKKI-----KED----VTEELRILQRINHANLVKLMGV--SSD 388
            + K+ +R T  G+ +A+KK+     KE        E++ILQ + H N+V L+ +  +  
Sbjct: 33  EVFKARHRKT--GQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKA 90
Query: 389 SQGNR-----FLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQY 443
           S  NR     +LV+++ E+                   ++  T S+  RV   + NGL Y
Sbjct: 91  SPYNRCKASIYLVFDFCEHD----------LAGLLSNVLVKFTLSEIKRVMQMLLNGLYY 140
Query: 444 MHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
           +H +    I+HRD++  N+ +      K+A+F LA
Sbjct: 141 IHRN---KILHRDMKAANVLITRDGVLKLADFGLA 172

>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor And Isoquinolinedione Inhibitor Length = 308

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLT 426
           E  +++  N  ++V+L+GV S  Q    ++ E    G L  +L            +   +
Sbjct: 72  EASVMKEFNCHHVVRLLGVVSQGQPT-LVIMELMTRGDLKSYLRSLRPEMENNPVLAPPS 130
Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSL 477
            S+ +++A ++A+G+ Y++ +     VHRD+   N  +   F  KI +F +
Sbjct: 131 LSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGM 178

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 22/118 (18%)
Query: 368 LRILQRINHANLVKLMGVSSDSQGNR----FLVYEYAENG---SLDKWLHPXXXXXXXXX 420
           LR L+   H N+V+LM V + S+ +R     LV+E+ +      LDK   P         
Sbjct: 65  LRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKD 124
Query: 421 XVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            +      Q LR       GL ++H +    IVHRD++  NI + S    K+A+F LA
Sbjct: 125 LM-----RQFLR-------GLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLA 167

>pdb|4EUU|A Chain A, Structure Of Bx-795 Complexed With Human Tbk1 Kinase Domain Phosphorylated On Ser172 Length = 319

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 15/123 (12%)
Query: 367 ELRILQRINHANLVKLMGVSSDSQG-NRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFL 425
           E  +L+++NH N+VKL  +  ++   ++ L+ E+   GSL   L               L
Sbjct: 57  EFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYG-------L 109
Query: 426 TWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL----DSRFKAKIANFSLAAPA 481
             S+ L V  DV  G+ ++ E+    IVHR+I+  NI      D +   K+ +F  A   
Sbjct: 110 PESEFLIVLRDVVGGMNHLRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAREL 166
Query: 482 TND 484
            +D
Sbjct: 167 EDD 169

>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70 Length = 613

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 95/224 (42%), Gaps = 31/224 (13%)
Query: 267 HLQRKRVRILNRNGSSLESADLI----PMKENSKSDRFEPKLAQNKLLPGVSGYLGKPIV 322
           H QR R+  LN +G + E A +     P      +  FE   +  + L     +L +  +
Sbjct: 279 HPQR-RIDTLNSDGYTPEPARITSPDKPRPMPMDTSVFESPFSDPEELKDKKLFLKRDNL 337
Query: 323 YEIEVIMESTMNLSEHYSIGKSVYRATIDGKVLAVKKIK--------EDVTEELRILQRI 374
               +I +  +      S+ + VYR       +A+K +K        E++  E +I+ ++
Sbjct: 338 ----LIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQL 393
Query: 375 NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLTWSQRLRVA 434
           ++  +V+L+GV         LV E A  G L K+L               L         
Sbjct: 394 DNPYIVRLIGVCQAEA--LMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLH-------- 443
Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             V+ G++Y+ E    + VHR++   N+ L +R  AKI++F L+
Sbjct: 444 -QVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLS 483

>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor (Igf-1r-Wt) Complex With Bms-754807 [1-(4-((5-Cyclopropyl- 1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2, 4]triazin-2-Yl)-N- (6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide] Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLT 426
           E  +++  N  ++V+L+GV S  Q    ++ E    G L  +L            +   +
Sbjct: 71  EASVMKEFNCHHVVRLLGVVSQGQPT-LVIMELMTRGDLKSYLRSLRPEMENNPVLAPPS 129
Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSL 477
            S+ +++A ++A+G+ Y++ +     VHRD+   N  +   F  KI +F +
Sbjct: 130 LSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGM 177

>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex With An Hydantoin Inhibitor Length = 305

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLT 426
           E  +++  N  ++V+L+GV S  Q    ++ E    G L  +L            +   +
Sbjct: 69  EASVMKEFNCHHVVRLLGVVSQGQPT-LVIMELMTRGDLKSYLRSLRPEMENNPVLAPPS 127
Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSL 477
            S+ +++A ++A+G+ Y++ +     VHRD+   N  +   F  KI +F +
Sbjct: 128 LSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGM 175

>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With Pyrimidine 8 Length = 301

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLT 426
           E  +++  N  ++V+L+GV S  Q    ++ E    G L  +L            +   +
Sbjct: 65  EASVMKEFNCHHVVRLLGVVSQGQPT-LVIMELMTRGDLKSYLRSLRPEMENNPVLAPPS 123
Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSL 477
            S+ +++A ++A+G+ Y++ +     VHRD+   N  +   F  KI +F +
Sbjct: 124 LSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGM 171

>pdb|4EUT|A Chain A, Structure Of Bx-795 Complexed With Unphosphorylated Human Tbk1 Kinase- Uld Domain Length = 396

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 15/123 (12%)
Query: 367 ELRILQRINHANLVKLMGVSSDSQG-NRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFL 425
           E  +L+++NH N+VKL  +  ++   ++ L+ E+   GSL   L               L
Sbjct: 57  EFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYG-------L 109
Query: 426 TWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL----DSRFKAKIANFSLAAPA 481
             S+ L V  DV  G+ ++ E+    IVHR+I+  NI      D +   K+ +F  A   
Sbjct: 110 PESEFLIVLRDVVGGMNHLRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAREL 166
Query: 482 TND 484
            +D
Sbjct: 167 EDD 169

>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A Benzimidazole Inhibitor Length = 307

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLT 426
           E  +++  N  ++V+L+GV S  Q    ++ E    G L  +L            +   +
Sbjct: 71  EASVMKEFNCHHVVRLLGVVSQGQPT-LVIMELMTRGDLKSYLRSLRPEMENNPVLAPPS 129
Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSL 477
            S+ +++A ++A+G+ Y++ +     VHRD+   N  +   F  KI +F +
Sbjct: 130 LSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGM 177

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 51/203 (25%)
Query: 338 HYSIGKSVY--RATIDGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGV 385
           H S G +VY  R   + +V+A+KK+           +D+ +E+R LQ++ H N ++  G 
Sbjct: 25  HGSFG-AVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGC 83
Query: 386 SSDSQGNRFLVYEYAENGSLDKW-LHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYM 444
               +   +LV EY    + D   +H           V                 GL Y+
Sbjct: 84  YL-REHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTH-----------GALQGLAYL 131
Query: 445 HEHAQPSIVHRDIRTNNIQLDSRFKAKIANF---SLAAPATNDVMP-------------- 487
           H H   +++HRD++  NI L      K+ +F   S+ APA   V                
Sbjct: 132 HSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANXFVGTPYWMAPEVILAMDE 188
Query: 488 -----KFDVFAFGVVLLELLSGK 505
                K DV++ G+  +EL   K
Sbjct: 189 GQYDGKVDVWSLGITCIELAERK 211

>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain Length = 308

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLT 426
           E  +++  N  ++V+L+GV S  Q    ++ E    G L  +L            +   +
Sbjct: 72  EASVMKEFNCHHVVRLLGVVSQGQPT-LVIMELMTRGDLKSYLRSLRPEMENNPVLAPPS 130
Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSL 477
            S+ +++A ++A+G+ Y++ +     VHRD+   N  +   F  KI +F +
Sbjct: 131 LSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGM 178

>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An Arylamide Inhibitor Length = 333

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 9/129 (6%)
Query: 361 KEDVTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXX 419
           KE +  EL+I+  +  H N+V L+G  +   G   ++ EY   G L  +L          
Sbjct: 93  KEALMSELKIMSHLGQHENIVNLLGACTHG-GPVLVITEYCCYGDLLNFLRRKSRVLETD 151
Query: 420 XXVIFL--TWSQR--LRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF 475
                   T S R  L  +  VA G+ ++   A  + +HRD+   N+ L +   AKI +F
Sbjct: 152 PAFAIANSTASTRDLLHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDF 208
Query: 476 SLAAPATND 484
            LA    ND
Sbjct: 209 GLARDIMND 217

>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1 Receptor Kinase In Complex With Pqip Length = 301

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLT 426
           E  +++  N  ++V+L+GV S  Q    ++ E    G L  +L            +   +
Sbjct: 65  EASVMKEFNCHHVVRLLGVVSQGQPT-LVIMELMTRGDLKSYLRSLRPEMENNPVLAPPS 123
Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSL 477
            S+ +++A ++A+G+ Y++ +     VHRD+   N  +   F  KI +F +
Sbjct: 124 LSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCXVAEDFTVKIGDFGM 171

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 39/166 (23%)
Query: 363 DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXV 422
           +  +E  I+  ++H +LV+L+GV         LV +   +G L +++H            
Sbjct: 86  EFMDEALIMASMDHPHLVRLLGVCLSPTIQ--LVTQLMPHGCLLEYVHEHKDNIGSQ--- 140
Query: 423 IFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT 482
           + L W       + +A G+ Y+ E     +VHRD+   N+ + S    KI +F LA    
Sbjct: 141 LLLNW------CVQIAKGMMYLEER---RLVHRDLAARNVLVKSPNHVKITDFGLARLLE 191
Query: 483 ND---------VMP------------KF----DVFAFGVVLLELLS 503
            D          MP            KF    DV+++GV + EL++
Sbjct: 192 GDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMT 237

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 366 EELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFL 425
           +E+ +L++++H N++KL     D + N +LV E    G L   +            VI  
Sbjct: 53  DEVAVLKQLDHPNIMKLYEFFEDKR-NYYLVMEVYRGGELFDEIILRQKFSEVDAAVIMK 111
Query: 426 TWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSLAA 479
                      V +G  Y+H+H   +IVHRD++  N+ L+S+ +    KI +F L+A
Sbjct: 112 Q----------VLSGTTYLHKH---NIVHRDLKPENLLLESKSRDALIKIVDFGLSA 155

>pdb|1RJB|A Chain A, Crystal Structure Of Flt3 Length = 344

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 51/196 (26%)
Query: 355 LAVKKIKE--DVTE------ELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
           +AVK +KE  D +E      EL+++ ++ +H N+V L+G  + S G  +L++EY   G L
Sbjct: 78  VAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLS-GPIYLIFEYCCYGDL 136
Query: 406 DKWL-------------HPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSI 452
             +L             +           +  LT+   L  A  VA G++++      S 
Sbjct: 137 LNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSC 193
Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLAAPATNDV---------MP---------------- 487
           VHRD+   N+ +      KI +F LA    +D          +P                
Sbjct: 194 VHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTI 253
Query: 488 KFDVFAFGVVLLELLS 503
           K DV+++G++L E+ S
Sbjct: 254 KSDVWSYGILLWEIFS 269

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 95/222 (42%), Gaps = 60/222 (27%)
Query: 328 IMESTMNLSEHYS----IGKSVY------RATIDGKVLAVKKI----------KEDVTEE 367
           +  ST   S+ Y     +GK  +      +  I G+  AVK I          KE +  E
Sbjct: 17  VQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLRE 76
Query: 368 LRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSL-DKWLHPXXXXXXXXXXVIFLT 426
           +++L++++H N+ KL     D +G  +LV E    G L D+ +                +
Sbjct: 77  VQLLKQLDHPNIXKLYEFFED-KGYFYLVGEVYTGGELFDEIISRKR-----------FS 124
Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA---KIANFSL-----A 478
                R+   V +G+ Y H++    IVHRD++  N+ L+S+ K    +I +F L     A
Sbjct: 125 EVDAARIIRQVLSGITYXHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEA 181
Query: 479 APATND-------VMP---------KFDVFAFGVVLLELLSG 504
           +    D       + P         K DV++ GV+L  LLSG
Sbjct: 182 SKKXKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSG 223

>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase Domain (2p) In Complex With A Bis-Azaindole Inhibitor Length = 336

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPXXXXXXXXXXVIFLT 426
           E  +++  N  ++V+L+GV S  Q    ++ E    G L  +L            +   +
Sbjct: 100 EASVMKEFNCHHVVRLLGVVSQGQPT-LVIMELMTRGDLKSYLRSLRPEMENNPVLAPPS 158
Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSL 477
            S+ +++A ++A+G+ Y++ +     VHRD+   N  +   F  KI +F +
Sbjct: 159 LSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGM 206

>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2 Length = 289

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 35/175 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL-----HPXXX 414
           ++E+   E  +  R+ H N+V L+GV +  Q    +++ Y  +G L ++L     H    
Sbjct: 55  LREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS-MIFSYCSHGDLHEFLVMRSPHSDVG 113
Query: 415 XXXXXXXVI-FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIA 473
                  V   L     + +   +A G++Y+  H    +VH+D+ T N+ +  +   KI+
Sbjct: 114 STDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKLNVKIS 170
Query: 474 NFSLAAPA---------TNDVMP------------KF----DVFAFGVVLLELLS 503
           +  L              N ++P            KF    D++++GVVL E+ S
Sbjct: 171 DLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFS 225

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 84/186 (45%), Gaps = 49/186 (26%)
Query: 352 GKVLAVKKI-------KEDVTEELRILQRINHANLVKLMGVSSDSQGNR-FLVYEYAENG 403
           GK++AVKK+       +E +  E+ I++   H N+V++   +S   G+  ++V E+ E G
Sbjct: 49  GKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMY--NSYLVGDELWVVMEFLEGG 106
Query: 404 SL-DKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNI 462
           +L D   H              +   Q   V L V   L  +H      ++HRDI++++I
Sbjct: 107 ALTDIVTHTR------------MNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSI 151
Query: 463 QLDSRFKAKIANFSLAAPATNDVM-----------------------PKFDVFAFGVVLL 499
            L    + K+++F   A  + +V                        P+ D+++ G++++
Sbjct: 152 LLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVI 211
Query: 500 ELLSGK 505
           E++ G+
Sbjct: 212 EMVDGE 217

>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain Length = 308

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 35/175 (20%)
Query: 360 IKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL-----HPXXX 414
           ++E+   E  +  R+ H N+V L+GV +  Q    +++ Y  +G L ++L     H    
Sbjct: 72  LREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS-MIFSYCSHGDLHEFLVMRSPHSDVG 130
Query: 415 XXXXXXXVI-FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIA 473
                  V   L     + +   +A G++Y+  H    +VH+D+ T N+ +  +   KI+
Sbjct: 131 STDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKLNVKIS 187
Query: 474 NFSLAAPA---------TNDVMP------------KF----DVFAFGVVLLELLS 503
           +  L              N ++P            KF    D++++GVVL E+ S
Sbjct: 188 DLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFS 242

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 27/138 (19%)
Query: 353 KVLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGS 404
           K++A+K I ++  E        E+ +L +I H N+V L  +  +S G+ +L+ +    G 
Sbjct: 44  KLVAIKCIAKEALEGKEGSMENEIAVLHKIKHPNIVALDDI-YESGGHLYLIMQLVSGGE 102
Query: 405 L-DKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNI- 462
           L D+ +              F T     R+   V + ++Y+H+     IVHRD++  N+ 
Sbjct: 103 LFDRIVEKG-----------FYTERDASRLIFQVLDAVKYLHDLG---IVHRDLKPENLL 148
Query: 463 --QLDSRFKAKIANFSLA 478
              LD   K  I++F L+
Sbjct: 149 YYSLDEDSKIMISDFGLS 166

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 84/186 (45%), Gaps = 49/186 (26%)
Query: 352 GKVLAVKKI-------KEDVTEELRILQRINHANLVKLMGVSSDSQGNR-FLVYEYAENG 403
           GK++AVKK+       +E +  E+ I++   H N+V++   +S   G+  ++V E+ E G
Sbjct: 54  GKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMY--NSYLVGDELWVVMEFLEGG 111
Query: 404 SL-DKWLHPXXXXXXXXXXVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNI 462
           +L D   H              +   Q   V L V   L  +H      ++HRDI++++I
Sbjct: 112 ALTDIVTH------------TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSI 156
Query: 463 QLDSRFKAKIANFSLAAPATNDVM-----------------------PKFDVFAFGVVLL 499
            L    + K+++F   A  + +V                        P+ D+++ G++++
Sbjct: 157 LLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVI 216
Query: 500 ELLSGK 505
           E++ G+
Sbjct: 217 EMVDGE 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	615
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	9e-66
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	4e-64
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	3e-61
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-51
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	1e-39
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	7e-39
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	2e-38
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	1e-36
4eby_A	212	Chitin elicitor receptor kinase 1; pathogen-associ	2e-36
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	1e-35
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	2e-35
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	5e-34
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	8e-34
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	4e-33
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	6e-33
3q4u_A	301	Activin receptor type-1; structural genomics conso	1e-32
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	1e-32
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	2e-31
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	4e-30
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	3e-27
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	6e-27
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	1e-24
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	2e-24
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	4e-24
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	2e-23
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	2e-23
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	2e-23
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	4e-23
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	4e-23
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	5e-23
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	7e-23
3pls_A	298	Macrophage-stimulating protein receptor; protein k	7e-23
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	8e-23
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	8e-23
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	8e-23
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	1e-22
4aoj_A	329	High affinity nerve growth factor receptor; transf	2e-22
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	2e-22
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	2e-22
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	2e-22
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-22
2a19_B	284	Interferon-induced, double-stranded RNA-activated	3e-22
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	3e-22
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	3e-22
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	4e-22
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	6e-22
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	6e-22
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	8e-22
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	8e-22
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	1e-21
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	1e-21
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	2e-21
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	2e-21
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	3e-21
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	4e-21
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	5e-21
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	5e-21
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	6e-21
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	9e-21
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	9e-21
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	1e-20
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-20
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	2e-20
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-20
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	2e-20
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	3e-20
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	5e-20
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	6e-20
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	9e-20
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	1e-19
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	1e-19
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	1e-19
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	2e-19
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	2e-19
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	2e-19
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	2e-19
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	3e-19
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	5e-19
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	9e-19
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	1e-18
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	4e-18
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	4e-18
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-17
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	3e-17
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	4e-17
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	4e-17
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	5e-17
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	5e-17
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	6e-17
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	7e-17
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	9e-17
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	1e-16
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	2e-16
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	2e-16
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	2e-16
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	3e-16
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	3e-16
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	4e-16
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	4e-16
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-16
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	6e-16
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	7e-16
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	7e-16
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	8e-16
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	1e-15
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	1e-15
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	1e-15
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	2e-15
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	2e-15
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	2e-15
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	2e-15
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	2e-15
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	3e-15
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	3e-15
3o0g_A	292	Cell division protein kinase 5; kinase activator c	3e-15
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	3e-15
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	3e-15
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	4e-15
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	5e-15
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	5e-15
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	7e-15
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	7e-15
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	7e-15
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	8e-15
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	8e-15
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	1e-14
3ork_A	311	Serine/threonine protein kinase; structural genomi	1e-14
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	1e-14
3niz_A	311	Rhodanese family protein; structural genomics, str	1e-14
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	1e-14
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	2e-14
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	3e-14
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	3e-14
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	3e-14
3bhy_A	283	Death-associated protein kinase 3; death associate	3e-14
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	3e-14
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	4e-14
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	4e-14
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	4e-14
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	5e-14
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	5e-14
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	6e-14
3uqc_A	286	Probable conserved transmembrane protein; structur	1e-13
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	1e-13
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	1e-13
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-13
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-13
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	3e-13
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	3e-13
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	3e-13
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	3e-13
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	4e-13
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	4e-13
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	5e-13
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	5e-13
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	9e-13
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	1e-12
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	2e-12
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	2e-12
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-12
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	2e-12
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	3e-12
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	4e-12
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	4e-12
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	6e-12
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	9e-12
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	9e-12
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	1e-11
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	2e-11
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	2e-11
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	2e-11
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	2e-11
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	2e-11
3rp9_A	458	Mitogen-activated protein kinase; structural genom	2e-11
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	3e-11
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	3e-11
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	4e-11
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	1e-10
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-10
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	1e-10
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	1e-10
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	3e-10
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	3e-10
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	4e-10
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	7e-10
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	7e-10
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	9e-10
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	1e-09
3aln_A	327	Dual specificity mitogen-activated protein kinase;	1e-09
3fme_A	290	Dual specificity mitogen-activated protein kinase;	2e-09
3an0_A	340	Dual specificity mitogen-activated protein kinase;	3e-09
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	4e-09
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	1e-08
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	1e-08
2dyl_A	318	Dual specificity mitogen-activated protein kinase	2e-08
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	2e-08
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	2e-07
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	2e-07
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	4e-07
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	1e-06
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	2e-06
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	3e-06
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	4e-06
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	4e-06
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	6e-06
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	9e-06
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	1e-05
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	1e-05
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	2e-05
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	4e-05
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	4e-05
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	1e-04
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	2e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  217 bits (555), Expect = 9e-66
 Identities = 91/303 (30%), Positives = 146/303 (48%), Gaps = 51/303 (16%)

Query: 316 YLGKPIVYEIEVIMESTMNLSEHYSIGK----SVYRATI-DGKVLAVKKIKEDVTE---- 366
           +LG+   + +  +  ++ N S    +G+     VY+  + DG ++AVK++KE+ T+    
Sbjct: 13  HLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGEL 72

Query: 367 ----ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSV 422
               E+ ++    H NL++L G        R LVY Y  NGS+   L  + +S       
Sbjct: 73  QFQTEVEMISMAVHRNLLRLRGFCMTPT-ERLLVYPYMANGSVASCLRERPESQPP---- 127

Query: 423 IFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA--AP 480
             L W +R R+AL  A GL Y+H+H  P I+HRD++  NI LD  F+A + +F LA    
Sbjct: 128 --LDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMD 185

Query: 481 ATN-----DVM-------P----------KFDVFAFGVVLLELLSGKKATRTT--ENGKT 516
             +      V        P          K DVF +GV+LLEL++G++A       N   
Sbjct: 186 YKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDD 245

Query: 517 AVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMA 576
            +L   ++ +L  +EK+ E L   +D +L+  Y  +    L  +A  CT    + RP M+
Sbjct: 246 VMLLDWVKGLL--KEKKLEAL---VDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMS 300

Query: 577 EVV 579
           EVV
Sbjct: 301 EVV 303

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  212 bits (542), Expect = 4e-64
 Identities = 76/280 (27%), Positives = 130/280 (46%), Gaps = 53/280 (18%)

Query: 344 SVYRATIDGKVLAVKKIKEDVTE-----------ELRILQRINHANLVKLMGVSSDSQGN 392
            VY+  ++   +AVKK+   V             E++++ +  H NLV+L+G SSD   +
Sbjct: 46  VVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGD-D 104

Query: 393 RFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSI 452
             LVY Y  NGSL   L     +         L+W  R ++A   ANG+ ++HE+     
Sbjct: 105 LCLVYVYMPNGSLLDRLSCLDGTPP-------LSWHMRCKIAQGAANGINFLHEN---HH 154

Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA--APA------TNDVM----------------PK 488
           +HRDI++ NI LD  F AKI++F LA  +        T+ ++                PK
Sbjct: 155 IHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPK 214

Query: 489 FDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF 548
            D+++FGVVLLE+++G  A       +  +  K   E+       E+ + +++D  +   
Sbjct: 215 SDIYSFGVVLLEIITGLPAVDEHREPQLLLDIK--EEIE----DEEKTIEDYIDKKMND- 267

Query: 549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS 588
                  ++ ++A  C  +K   RP++ +V   L  +T S
Sbjct: 268 ADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTAS 307

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  205 bits (523), Expect = 3e-61
 Identities = 78/301 (25%), Positives = 129/301 (42%), Gaps = 52/301 (17%)

Query: 328 IMESTMNLSEHYSIGK----SVYRATI-DGKVLAVKKIKED----VTE---ELRILQRIN 375
           + E+T N    + IG      VY+  + DG  +A+K+   +    + E   E+  L    
Sbjct: 34  LEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCR 93

Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVAL 435
           H +LV L+G   + +    L+Y+Y ENG+L + L+     + S      ++W QRL + +
Sbjct: 94  HPHLVSLIGFCDE-RNEMILIYKYMENGNLKRHLYGSDLPTMS------MSWEQRLEICI 146

Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA--APATND------VM- 486
             A GL Y+H     +I+HRD+++ NI LD  F  KI +F ++      +       V  
Sbjct: 147 GAARGLHYLHT---RAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKG 203

Query: 487 ------P----------KFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE 530
                 P          K DV++FGVVL E+L  + A   +   +   L +   E     
Sbjct: 204 TLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHN-- 261

Query: 531 EKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE 590
                +L   +DPNL      +        A  C    S  RP+M +V++ L    +  E
Sbjct: 262 ---NGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQE 318

Query: 591 T 591
           +
Sbjct: 319 S 319

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  178 bits (454), Expect = 2e-51
 Identities = 64/315 (20%), Positives = 120/315 (38%), Gaps = 62/315 (19%)

Query: 326 EVIMESTMNLSEHYSIGK----SVYRATIDGKVLAVKKIKEDVTE------ELRILQRIN 375
           E +   +M L       +     V++A +  + +AVK       +      E+  L  + 
Sbjct: 17  ENLYFQSMPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQSWQNEYEVYSLPGMK 76

Query: 376 HANLVKLMGV---SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLR 432
           H N+++ +G     +    + +L+  + E GSL  +L               ++W++   
Sbjct: 77  HENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANV-----------VSWNELCH 125

Query: 433 VALDVANGLQYMHEHAQ-------PSIVHRDIRTNNIQLDSRFKAKIANFSLA------- 478
           +A  +A GL Y+HE          P+I HRDI++ N+ L +   A IA+F LA       
Sbjct: 126 IAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGK 185

Query: 479 ---------------AP--------ATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGK 515
                          AP           D   + D++A G+VL EL S   A     +  
Sbjct: 186 SAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEY 245

Query: 516 TAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALS-LATLARACTMDKSLSRPN 574
                +EI +   +E+ +E  +     P L  ++     ++ L      C    + +R +
Sbjct: 246 MLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLS 305

Query: 575 MAEVVFNLSVLTQST 589
              V   ++ + + T
Sbjct: 306 AGCVGERITQMQRLT 320

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  147 bits (372), Expect = 1e-39
 Identities = 61/320 (19%), Positives = 110/320 (34%), Gaps = 73/320 (22%)

Query: 334 NLSEHYSIGK----SVYRATIDGKVLAVKKI----KEDVTEELRI--LQRINHANLVKLM 383
           NL     IG+    +VY+ ++D + +AVK      +++   E  I  +  + H N+ + +
Sbjct: 14  NLKLLELIGRGRYGAVYKGSLDERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFI 73

Query: 384 G----VSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVAN 439
                V++D +    LV EY  NGSL K+L   +             W    R+A  V  
Sbjct: 74  VGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHT-----------SDWVSSCRLAHSVTR 122

Query: 440 GLQYMHE------HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA--------------- 478
           GL Y+H       H +P+I HRD+ + N+ + +     I++F L+               
Sbjct: 123 GLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEED 182

Query: 479 -------------AP----------ATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGK 515
                        AP               + + D++A G++  E+          E+  
Sbjct: 183 NAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVP 242

Query: 516 T--AVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGAL--SLATLARACTMDKSLS 571
                   E+      E+ +    R    P     +  +     SL      C    + +
Sbjct: 243 EYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEA 302

Query: 572 RPNMAEVVFNLSVLTQSTET 591
           R         ++ L    E 
Sbjct: 303 RLTAQXAEERMAELMMIWER 322

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  144 bits (365), Expect = 7e-39
 Identities = 65/270 (24%), Positives = 108/270 (40%), Gaps = 55/270 (20%)

Query: 345 VYRATIDGKVLAVKKIK-----EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEY 399
           V +A    K +A+K+I+     +    ELR L R+NH N+VKL G   +      LV EY
Sbjct: 24  VCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACLN---PVCLVMEY 80

Query: 400 AENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
           AE GSL   LH        +  + + T +  +   L  + G+ Y+H     +++HRD++ 
Sbjct: 81  AEGGSLYNVLH-------GAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKP 133

Query: 460 NNIQLDSRFK-AKIANFSLAAPATNDVM--------------------PKFDVFAFGVVL 498
            N+ L +     KI +F  A      +                      K DVF++G++L
Sbjct: 134 PNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIIL 193

Query: 499 LELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLA 558
            E+++ +K           ++W     V           R    P L    P      + 
Sbjct: 194 WEVITRRKPFDEIGGPAFRIMWA----VHN-------GTR----PPLIKNLPKP----IE 234

Query: 559 TLARACTMDKSLSRPNMAEVVFNLSVLTQS 588
           +L   C       RP+M E+V  ++ L + 
Sbjct: 235 SLMTRCWSKDPSQRPSMEEIVKIMTHLMRY 264

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  143 bits (362), Expect = 2e-38
 Identities = 69/284 (24%), Positives = 116/284 (40%), Gaps = 62/284 (21%)

Query: 345 VYRATIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFL 395
           V+RA   G  +AVK +           +   E+ I++R+ H N+V  MG  +    N  +
Sbjct: 53  VHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQ-PPNLSI 111

Query: 396 VYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHR 455
           V EY   GSL + LH        SG+   L   +RL +A DVA G+ Y+H    P IVHR
Sbjct: 112 VTEYLSRGSLYRLLH-------KSGAREQLDERRRLSMAYDVAKGMNYLHNRN-PPIVHR 163

Query: 456 DIRTNNIQLDSRFKAKIANFSLA--------------------AP---ATNDVMPKFDVF 492
           ++++ N+ +D ++  K+ +F L+                    AP          K DV+
Sbjct: 164 NLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVY 223

Query: 493 AFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPID 552
           +FGV+L EL + +              W  +     V     +  R      +    P +
Sbjct: 224 SFGVILWELATLQ------------QPWGNLNPAQVVAAVGFKCKR----LEI----PRN 263

Query: 553 GALSLATLARACTMDKSLSRPNMAEVVFNL-SVLTQSTETLERS 595
               +A +   C  ++   RP+ A ++  L  ++  +     RS
Sbjct: 264 LNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAVPPPNRS 307

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  136 bits (346), Expect = 1e-36
 Identities = 51/269 (18%), Positives = 101/269 (37%), Gaps = 60/269 (22%)

Query: 345 VYRATIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRF- 394
           +++    G  + VK +K          D  EE   L+  +H N++ ++G           
Sbjct: 26  LWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPT 85

Query: 395 LVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
           L+  +   GSL   LH         G+   +  SQ ++ ALD+A G+ ++H   +P I  
Sbjct: 86  LITHWMPYGSLYNVLH--------EGTNFVVDQSQAVKFALDMARGMAFLHTL-EPLIPR 136

Query: 455 RDIRTNNIQLDSRFKAKIANFSLA---------------AP------ATNDVMPKFDVFA 493
             + + ++ +D    A+I+   +                AP        +      D+++
Sbjct: 137 HALNSRSVMIDEDMTARISMADVKFSFQSPGRMYAPAWVAPEALQKKPEDTNRRSADMWS 196

Query: 494 FGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDG 553
           F V+L EL++ +            V + ++  +    +   E LR    P +    P   
Sbjct: 197 FAVLLWELVTRE------------VPFADLSNMEIGMKVALEGLR----PTI----PPGI 236

Query: 554 ALSLATLARACTMDKSLSRPNMAEVVFNL 582
           +  ++ L + C  +    RP    +V  L
Sbjct: 237 SPHVSKLMKICMNEDPAKRPKFDMIVPIL 265

>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A* Length = 212

 Score =  134 bits (339), Expect = 2e-36
 Identities = 39/184 (21%), Positives = 82/184 (44%), Gaps = 4/184 (2%)

Query: 58  SNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPIICGC-TGNQYFANITYQIKKGDS 116
           S+I+    ++   I R ++ + +   +     +LVP  C C  G+    N +Y +++ D+
Sbjct: 29  SSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPFPCECQPGDFLGHNFSYSVRQEDT 88

Query: 117 YYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLITY 176
           Y  V+I+++ NLT   ++   NP      + +   +   + C C  ++ +       +TY
Sbjct: 89  YERVAISNYANLTTMESLQARNP-FPATNIPLSATLNVLVNCSCGDES-VSKDFGLFVTY 146

Query: 177 VWQPGDDVSQVGAKLNASSAAIETENEYRNFSEAVSLPVLIPVSQLPSLSQSYPSTKRNG 236
             +P D +S +      S+  ++  N   NF+    + V +P          + S+K++G
Sbjct: 147 PLRPEDSLSSIARSSGVSADILQRYNPGVNFNSGNGI-VYVPGRDPNGAFPPFKSSKQDG 205

Query: 237 SKHH 240
             HH
Sbjct: 206 VHHH 209

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score =  136 bits (344), Expect = 1e-35
 Identities = 72/364 (19%), Positives = 124/364 (34%), Gaps = 88/364 (24%)

Query: 279 NGSSLESADLIPMKENSKSDRFEPKLAQNKLLPGVSGYLGKPIVYEIEVIMESTMNLSEH 338
            G SL   DLI   ++S S    P L Q                      +   + + + 
Sbjct: 7   PGESLR--DLIEQSQSSGSGSGLPLLVQR--------------------TIAKQIQMVK- 43

Query: 339 YSIGK----SVYRATIDGKVLAVKKIK-----EDVTE-ELRILQRINHANLVKLMGVSSD 388
             IGK     V+     G+ +AVK            E E+     + H N++  +     
Sbjct: 44  -QIGKGRYGEVWMGKWRGEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIK 102

Query: 389 SQGNR---FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMH 445
             G+    +L+ +Y ENGSL  +L   +           L     L++A    +GL ++H
Sbjct: 103 GTGSWTQLYLITDYHENGSLYDYLKSTT-----------LDAKSMLKLAYSSVSGLCHLH 151

Query: 446 E-----HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA-----------APATNDV---- 485
                   +P+I HRD+++ NI +       IA+  LA            P    V    
Sbjct: 152 TEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKR 211

Query: 486 -MP-----------------KFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVL 527
            MP                   D+++FG++L E+     +    E  +       +    
Sbjct: 212 YMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLP-YHDLVPSDP 270

Query: 528 KVEEKREERLRNWMDPNLESFYPIDGAL-SLATLARACTMDKSLSRPNMAEVVFNLSVLT 586
             E+ RE      + P+  + +  D  L  +  L   C      SR     V   L+ ++
Sbjct: 271 SYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMS 330

Query: 587 QSTE 590
           +S +
Sbjct: 331 ESQD 334

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  133 bits (337), Expect = 2e-35
 Identities = 63/278 (22%), Positives = 105/278 (37%), Gaps = 72/278 (25%)

Query: 345 VYRATIDGKVLAVKKIK-----------EDVTEELRILQRINHANLVKLMGVSSDSQGNR 393
           VYRA   G  +AVK  +           E+V +E ++   + H N++ L GV      N 
Sbjct: 23  VYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEP-NL 81

Query: 394 FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIV 453
            LV E+A  G L++ L  K            +     +  A+ +A G+ Y+H+ A   I+
Sbjct: 82  CLVMEFARGGPLNRVLSGKR-----------IPPDILVNWAVQIARGMNYLHDEAIVPII 130

Query: 454 HRDIRTNNIQLDSRFK--------AKIANFSLAAPATNDVM-----------P------- 487
           HRD++++NI +  + +         KI +F LA                   P       
Sbjct: 131 HRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASM 190

Query: 488 ---KFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPN 544
                DV+++GV+L ELL+G+            V ++ I  +         +L       
Sbjct: 191 FSKGSDVWSYGVLLWELLTGE------------VPFRGIDGLAVAYGVAMNKLA----LP 234

Query: 545 LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL 582
           +    P       A L   C      SRP+   ++  L
Sbjct: 235 I----PSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQL 268

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  130 bits (328), Expect = 5e-34
 Identities = 69/283 (24%), Positives = 114/283 (40%), Gaps = 78/283 (27%)

Query: 345 VYRAT--IDGKVLAVKKIK--------------EDVTEELRILQRINHANLVKLMGVSSD 388
           V++     D  V+A+K +               ++   E+ I+  +NH N+VKL G+  +
Sbjct: 35  VHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHN 94

Query: 389 SQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA 448
                 +V E+   G L   L  K+           + WS +LR+ LD+A G++YM    
Sbjct: 95  ---PPRMVMEFVPCGDLYHRLLDKAHP---------IKWSVKLRLMLDIALGIEYMQNQN 142

Query: 449 QPSIVHRDIRTNNIQLDSR-----FKAKIANFSLAAPATNDVM----------P------ 487
            P IVHRD+R+ NI L S        AK+A+F L+  + + V           P      
Sbjct: 143 -PPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAE 201

Query: 488 ------KFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIR--EVLKVEEKREERLRN 539
                 K D ++F ++L  +L+G+              + E    ++  +   REE LR 
Sbjct: 202 EESYTEKADTYSFAMILYTILTGE------------GPFDEYSYGKIKFINMIREEGLR- 248

Query: 540 WMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL 582
              P +    P D    L  +   C       RP+ + +V  L
Sbjct: 249 ---PTI----PEDCPPRLRNVIELCWSGDPKKRPHFSYIVKEL 284

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  127 bits (322), Expect = 4e-33
 Identities = 52/198 (26%), Positives = 82/198 (41%), Gaps = 52/198 (26%)

Query: 345 VYRATIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFL 395
           VY+    G V AVK +          +    E+ +L++  H N++  MG S+       +
Sbjct: 40  VYKGKWHGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST--APQLAI 96

Query: 396 VYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHR 455
           V ++ E  SL   LH                  + + +A   A G+ Y+H     SI+HR
Sbjct: 97  VTQWCEGSSLYHHLHASETK---------FEMKKLIDIARQTARGMDYLH---AKSIIHR 144

Query: 456 DIRTNNIQLDSRFKAKIANFSLA----------------------AP------ATNDVMP 487
           D+++NNI L      KI +F LA                      AP       +N    
Sbjct: 145 DLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSF 204

Query: 488 KFDVFAFGVVLLELLSGK 505
           + DV+AFG+VL EL++G+
Sbjct: 205 QSDVYAFGIVLYELMTGQ 222

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score =  126 bits (319), Expect = 1e-32
 Identities = 65/301 (21%), Positives = 115/301 (38%), Gaps = 72/301 (23%)

Query: 341 IGK----SVYRATIDGKVLAVKKI-----KEDVTE-ELRILQRINHANLVKLMGVSSDSQ 390
           +GK     V+R +  G+ +AVK       K    E EL     + H N++  +     S+
Sbjct: 16  VGKGRYGEVWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSR 75

Query: 391 GNR---FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE- 446
            +    +L+  Y E GSL  +L   +           L     LR+ L +A+GL ++H  
Sbjct: 76  HSSTQLWLITHYHEMGSLYDYLQLTT-----------LDTVSCLRIVLSIASGLAHLHIE 124

Query: 447 ----HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA-----------APATNDV-----M 486
                 +P+I HRD+++ NI +    +  IA+  LA                 V     M
Sbjct: 125 IFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYM 184

Query: 487 P-----------------KFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV 529
                             + D++AFG+VL E+     +    E+ K    +  +      
Sbjct: 185 APEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPP-FYDVVPNDPSF 243

Query: 530 EEKRE----ERLRNWMDPNLESFYPIDGALS-LATLARACTMDKSLSRPNMAEVVFNLSV 584
           E+ R+    ++ R    PN+ + +  D  L+ LA L + C      +R     +   L+ 
Sbjct: 244 EDMRKVVCVDQQR----PNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTK 299

Query: 585 L 585
           +
Sbjct: 300 I 300

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score =  127 bits (321), Expect = 1e-32
 Identities = 69/304 (22%), Positives = 117/304 (38%), Gaps = 72/304 (23%)

Query: 341 IGK----SVYRATIDGKVLAVKKIK-----EDVTE-ELRILQRINHANLVKLMGVSSDSQ 390
           IGK     V+R    G+ +AVK            E E+     + H N++  +   +   
Sbjct: 50  IGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDN 109

Query: 391 GNR---FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH 447
           G     +LV +Y E+GSL  +L+  +           +T    +++AL  A+GL ++H  
Sbjct: 110 GTWTQLWLVSDYHEHGSLFDYLNRYT-----------VTVEGMIKLALSTASGLAHLHME 158

Query: 448 AQ-----PSIVHRDIRTNNIQLDSRFKAKIANFSLA-----APATNDVMP---------- 487
                  P+I HRD+++ NI +       IA+  LA     A  T D+ P          
Sbjct: 159 IVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYM 218

Query: 488 ------------------KFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV 529
                             + D++A G+V  E+          E+ +    +  +     V
Sbjct: 219 APEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLP-YYDLVPSDPSV 277

Query: 530 EEKR----EERLRNWMDPNLESFYPIDGALS-LATLARACTMDKSLSRPNMAEVVFNLSV 584
           EE R    E++LR    PN+ + +    AL  +A + R C      +R     +   LS 
Sbjct: 278 EEMRKVVCEQKLR----PNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQ 333

Query: 585 LTQS 588
           L+Q 
Sbjct: 334 LSQQ 337

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  123 bits (310), Expect = 2e-31
 Identities = 51/292 (17%), Positives = 98/292 (33%), Gaps = 78/292 (26%)

Query: 345 VYRAT--IDGKVLAVKKIKEDVTE-------ELRILQRINHANLVKLMGVSSDSQGNRFL 395
             + T    G+V+ +K++     E       E+++++ + H N++K +GV          
Sbjct: 26  AIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYK-DKRLNF 84

Query: 396 VYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHR 455
           + EY + G+L   +                 WSQR+  A D+A+G+ Y+H     +I+HR
Sbjct: 85  ITEYIKGGTLRGIIKSMDSQ---------YPWSQRVSFAKDIASGMAYLHSM---NIIHR 132

Query: 456 DIRTNNIQLDSRFKAKIANFSLAAPATNDVMP---------------------------- 487
           D+ ++N  +       +A+F LA    ++                               
Sbjct: 133 DLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPE 192

Query: 488 ---------KFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLR 538
                    K DVF+FG+VL E++    A            +        +  +      
Sbjct: 193 MINGRSYDEKVDVFSFGIVLCEIIGRVNADPD---------YLPRTMDFGLNVRGFLDR- 242

Query: 539 NWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE 590
                    + P +   S   +   C       RP+  ++   L  L     
Sbjct: 243 ---------YCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLA 285

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score =  119 bits (301), Expect = 4e-30
 Identities = 38/207 (18%), Positives = 72/207 (34%), Gaps = 61/207 (29%)

Query: 345 VYRATIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFL 395
           VY     G+V A++ I          +    E+   ++  H N+V  MG       +  +
Sbjct: 49  VYHGRWHGEV-AIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMS-PPHLAI 106

Query: 396 VYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHR 455
           +    +  +L   +               L  ++  ++A ++  G+ Y+H      I+H+
Sbjct: 107 ITSLCKGRTLYSVVRDAKIV---------LDVNKTRQIAQEIVKGMGYLH---AKGILHK 154

Query: 456 DIRTNNIQLDSRFKAKIANFSLA-------------------------AP---------A 481
           D+++ N+  D+  K  I +F L                          AP          
Sbjct: 155 DLKSKNVFYDNG-KVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDT 213

Query: 482 TNDVMP---KFDVFAFGVVLLELLSGK 505
             D +P     DVFA G +  EL + +
Sbjct: 214 EEDKLPFSKHSDVFALGTIWYELHARE 240

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score =  113 bits (286), Expect = 3e-27
 Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 36/184 (19%)

Query: 345 VYRATIDGKVLAVKKIKEDVTE-----ELRILQRINHANLVKLMGVSSDSQGNRFLVYEY 399
           V      G  +AVK IK D T      E  ++ ++ H+NLV+L+GV  + +G  ++V EY
Sbjct: 209 VMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 268

Query: 400 AENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
              GSL  +L  + +S         L     L+ +LDV   ++Y+  +   + VHRD+  
Sbjct: 269 MAKGSLVDYLRSRGRSV--------LGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAA 317

Query: 460 NNIQLDSRFKAKIANFSLA----APATNDVMP------------KF----DVFAFGVVLL 499
            N+ +     AK+++F L     +      +P            KF    DV++FG++L 
Sbjct: 318 RNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLW 377

Query: 500 ELLS 503
           E+ S
Sbjct: 378 EIYS 381

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score =  109 bits (275), Expect = 6e-27
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 40/186 (21%)

Query: 345 VYRATIDGKVLAVKKIKEDVTE-----ELRILQRINHANLVKLMGVSSDSQGNRFLVYEY 399
           V      G  +AVK IK D T      E  ++ ++ H+NLV+L+GV  + +G  ++V EY
Sbjct: 37  VMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 96

Query: 400 AENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT 459
              GSL  +L  + +S         L     L+ +LDV   ++Y+  +   + VHRD+  
Sbjct: 97  MAKGSLVDYLRSRGRSV--------LGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAA 145

Query: 460 NNIQLDSRFKAKIANFSLA-----------------AP-ATNDVMPKF----DVFAFGVV 497
            N+ +     AK+++F L                  AP A  +   KF    DV++FG++
Sbjct: 146 RNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALRE--KKFSTKSDVWSFGIL 203

Query: 498 LLELLS 503
           L E+ S
Sbjct: 204 LWEIYS 209

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score =  103 bits (260), Expect = 1e-24
 Identities = 43/200 (21%), Positives = 84/200 (42%), Gaps = 46/200 (23%)

Query: 345 VYRATIDG--------KVLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSD 388
           VY     G        +V A+K + E  +         E  +++  N  ++V+L+GV S 
Sbjct: 41  VYEGVAKGVVKDEPETRV-AIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ 99

Query: 389 SQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA 448
            Q    ++ E    G L  +L     + +++  +   + S+ +++A ++A+G+ Y++ + 
Sbjct: 100 GQ-PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN- 157

Query: 449 QPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP------------ 487
               VHRD+   N  +   F  KI +F +                ++P            
Sbjct: 158 --KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDG 215

Query: 488 KF----DVFAFGVVLLELLS 503
            F    DV++FGVVL E+ +
Sbjct: 216 VFTTYSDVWSFGVVLWEIAT 235

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score =  102 bits (257), Expect = 2e-24
 Identities = 53/232 (22%), Positives = 91/232 (39%), Gaps = 59/232 (25%)

Query: 316 YLGKPIVYEIEVIMESTMNLSEHYSIGK----SVYRATIDGK-----VLAVKKIKEDVTE 366
            +       I       ++ +E   IG+     VY  T+          AVK +      
Sbjct: 11  LVQAVQHVVIG-PSSLIVHFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDI 67

Query: 367 --------ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSS 418
                   E  I++  +H N++ L+G+   S+G+  +V  Y ++G L  ++  ++ +   
Sbjct: 68  GEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN--- 124

Query: 419 SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
                  T    +   L VA G++Y+        VHRD+   N  LD +F  K+A+F LA
Sbjct: 125 ------PTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLA 175

Query: 479 -----------APATNDVMP------------KF----DVFAFGVVLLELLS 503
                         T   +P            KF    DV++FGV+L EL++
Sbjct: 176 RDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 227

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score =  103 bits (259), Expect = 4e-24
 Identities = 41/194 (21%), Positives = 77/194 (39%), Gaps = 48/194 (24%)

Query: 345 VYRATIDGKVL--AVKKIKEDVT--------EELRILQRINHANLVKLMGVSSDSQGNRF 394
           V+   +       AVK  +E +         +E RIL++ +H N+V+L+GV +  Q   +
Sbjct: 130 VFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQ-PIY 188

Query: 395 LVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
           +V E  + G    +L  +            L     L++  D A G++Y+        +H
Sbjct: 189 IVMELVQGGDFLTFLRTEGAR---------LRVKTLLQMVGDAAAGMEYLESK---CCIH 236

Query: 455 RDIRTNNIQLDSRFKAKIANFSLAAPATNDVM-------------------------PKF 489
           RD+   N  +  +   KI++F ++    + V                           + 
Sbjct: 237 RDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSES 296

Query: 490 DVFAFGVVLLELLS 503
           DV++FG++L E  S
Sbjct: 297 DVWSFGILLWETFS 310

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score =   99 bits (250), Expect = 2e-23
 Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 50/205 (24%)

Query: 345 VYRATIDGKVL-------AVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDS 389
           VY+  + G          A+K +K+            E  +  R+ H N+V L+GV +  
Sbjct: 25  VYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKD 84

Query: 390 QGNRFLVYEYAENGSLDKWLH---PKSKSSSSSGSVIF---LTWSQRLRVALDVANGLQY 443
           Q    +++ Y  +G L ++L    P S   S+         L     + +   +A G++Y
Sbjct: 85  Q-PLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEY 143

Query: 444 MHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP------- 487
           +  H    +VH+D+ T N+ +  +   KI++  L              N ++P       
Sbjct: 144 LSSH---HVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPE 200

Query: 488 -----KF----DVFAFGVVLLELLS 503
                KF    D++++GVVL E+ S
Sbjct: 201 AIMYGKFSIDSDIWSYGVVLWEVFS 225

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score =  101 bits (253), Expect = 2e-23
 Identities = 63/294 (21%), Positives = 110/294 (37%), Gaps = 70/294 (23%)

Query: 265 NHHLQRKRVRILNRNGSSLESADLIPMKENSKSDRFEPKLAQNKLLPGVSG--------- 315
           +H  +R  V             D I   E   +  ++   ++N    G +          
Sbjct: 13  HHGRRRASVAAGILVPRGSPGLDGICSIEELSTSLYKKAGSENLYFQGANTVHIDLSALN 72

Query: 316 --YLGKPIVYEIEVIMESTMNLSEHYSIGK----SVYRAT---IDGKVL--AVKKIKEDV 364
              +       I       ++ +E   IG+     VY  T    DGK +  AVK +    
Sbjct: 73  PELVQAVQHVVIG-PSSLIVHFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT 129

Query: 365 TE--------ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSS 416
                     E  I++  +H N++ L+G+   S+G+  +V  Y ++G L  ++  ++ + 
Sbjct: 130 DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHN- 188

Query: 417 SSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFS 476
                    T    +   L VA G++++        VHRD+   N  LD +F  K+A+F 
Sbjct: 189 --------PTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFG 237

Query: 477 LA-----------APATNDVMP------------KF----DVFAFGVVLLELLS 503
           LA              T   +P            KF    DV++FGV+L EL++
Sbjct: 238 LARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 291

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score =  100 bits (251), Expect = 2e-23
 Identities = 52/200 (26%), Positives = 82/200 (41%), Gaps = 52/200 (26%)

Query: 344 SVYRATIDGK------VLAVKKIKEDVTE-------ELRILQRINHANLVKLMGVSSDSQ 390
           SV     D        ++AVK+++    +       E++IL+ ++   +VK  GVS    
Sbjct: 38  SVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPG 97

Query: 391 GN-RFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQ 449
                LV EY  +G L  +L  + ++         L  S+ L  +  +  G++Y+     
Sbjct: 98  RQSLRLVMEYLPSGCLRDFL-QRHRAR--------LDASRLLLYSSQICKGMEYLGSR-- 146

Query: 450 PSIVHRDIRTNNIQLDSRFKAKIANFSLA--APATNDV--------MP------------ 487
              VHRD+   NI ++S    KIA+F LA   P   D          P            
Sbjct: 147 -RCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDN 205

Query: 488 KF----DVFAFGVVLLELLS 503
            F    DV++FGVVL EL +
Sbjct: 206 IFSRQSDVWSFGVVLYELFT 225

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 99.7 bits (249), Expect = 4e-23
 Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 45/200 (22%)

Query: 345 VYRATIDGKVL----AVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSSDSQG 391
           V +A I    L    A+K++KE  ++        EL +L ++ +H N++ L+G      G
Sbjct: 41  VLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHR-G 99

Query: 392 NRFLVYEYAENGSLDKWL------HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMH 445
             +L  EYA +G+L  +L            + ++ +   L+  Q L  A DVA G+ Y+ 
Sbjct: 100 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS 159

Query: 446 EHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------APATNDVMP------------ 487
           +      +HRD+   NI +   + AKIA+F L+         T   +P            
Sbjct: 160 QK---QFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYS 216

Query: 488 KF----DVFAFGVVLLELLS 503
            +    DV+++GV+L E++S
Sbjct: 217 VYTTNSDVWSYGVLLWEIVS 236

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 99.3 bits (248), Expect = 4e-23
 Identities = 53/201 (26%), Positives = 79/201 (39%), Gaps = 55/201 (27%)

Query: 344 SVYRATIDGK------VLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDS 389
            V     D        ++AVK +K D           E+ IL+ + H +++K  G   D+
Sbjct: 46  KVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDA 105

Query: 390 QGN-RFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA 448
                 LV EY   GSL  +L   S           +  +Q L  A  +  G+ Y+H   
Sbjct: 106 GAASLQLVMEYVPLGSLRDYLPRHS-----------IGLAQLLLFAQQICEGMAYLHAQ- 153

Query: 449 QPSIVHRDIRTNNIQLDSRFKAKIANFSLA--APATNDV--------MP----------- 487
               +HRD+   N+ LD+    KI +F LA   P  ++          P           
Sbjct: 154 --HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKE 211

Query: 488 -KF----DVFAFGVVLLELLS 503
            KF    DV++FGV L ELL+
Sbjct: 212 YKFYYASDVWSFGVTLYELLT 232

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 98.9 bits (247), Expect = 5e-23
 Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 53/201 (26%)

Query: 344 SVYRATIDGK------VLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDS 389
            V     D +       +AVK +K +           E+ IL+ + H N+VK  G+ ++ 
Sbjct: 36  KVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTED 95

Query: 390 QGNR-FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA 448
            GN   L+ E+  +GSL ++L PK+K+         +   Q+L+ A+ +  G+ Y+    
Sbjct: 96  GGNGIKLIMEFLPSGSLKEYL-PKNKNK--------INLKQQLKYAVQICKGMDYLGSR- 145

Query: 449 QPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------APATNDVMP----------- 487
               VHRD+   N+ ++S  + KI +F L               +   P           
Sbjct: 146 --QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQ 203

Query: 488 -KF----DVFAFGVVLLELLS 503
            KF    DV++FGV L ELL+
Sbjct: 204 SKFYIASDVWSFGVTLHELLT 224

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 97.6 bits (244), Expect = 7e-23
 Identities = 48/190 (25%), Positives = 75/190 (39%), Gaps = 44/190 (23%)

Query: 345 VYRATIDGKVL-AVKKIKEDVTE------ELRILQRINHANLVKLMGVSSDSQGNRFLVY 397
           V      G+   AVK IKE          E + + +++H  LVK  GV S      ++V 
Sbjct: 24  VKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEY-PIYIVT 82

Query: 398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
           EY  NG L  +L    K          L  SQ L +  DV  G+ ++  H     +HRD+
Sbjct: 83  EYISNGCLLNYLRSHGKG---------LEPSQLLEMCYDVCEGMAFLESH---QFIHRDL 130

Query: 458 RTNNIQLDSRFKAKIANFSLAAPATNDV-------------MP-------KF----DVFA 493
              N  +D     K+++F +     +D                       K+    DV+A
Sbjct: 131 AARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWA 190

Query: 494 FGVVLLELLS 503
           FG+++ E+ S
Sbjct: 191 FGILMWEVFS 200

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 98.5 bits (246), Expect = 7e-23
 Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 52/199 (26%)

Query: 345 VYRATIDGK-----VLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQG 391
           VY      +       A+K +              E  +++ +NH N++ L+G+    +G
Sbjct: 37  VYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEG 96

Query: 392 NRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPS 451
              ++  Y  +G L +++    ++          T    +   L VA G++Y+ E     
Sbjct: 97  LPHVLLPYMCHGDLLQFIRSPQRN---------PTVKDLISFGLQVARGMEYLAEQ---K 144

Query: 452 IVHRDIRTNNIQLDSRFKAKIANFSLA-----------APATNDVMP------------K 488
            VHRD+   N  LD  F  K+A+F LA               +  +P            +
Sbjct: 145 FVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYR 204

Query: 489 F----DVFAFGVVLLELLS 503
           F    DV++FGV+L ELL+
Sbjct: 205 FTTKSDVWSFGVLLWELLT 223

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 98.9 bits (247), Expect = 8e-23
 Identities = 41/203 (20%), Positives = 80/203 (39%), Gaps = 51/203 (25%)

Query: 345 VYRATIDGK-----VLAVKKIKEDVT---------EELRILQRINHANLVKLMGVSSDSQ 390
           V  A +  +      +AVK +K D+           E   ++  +H ++ KL+GVS  S+
Sbjct: 39  VREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSR 98

Query: 391 GNR-----FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMH 445
                    ++  + ++G L  +L     +S    +   L     +R  +D+A G++Y+ 
Sbjct: 99  AKGRLPIPMVILPFMKHGDLHAFL----LASRIGENPFNLPLQTLVRFMVDIACGMEYLS 154

Query: 446 EHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP--------- 487
                + +HRD+   N  L       +A+F L+                +P         
Sbjct: 155 SR---NFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESL 211

Query: 488 ---KF----DVFAFGVVLLELLS 503
               +    DV+AFGV + E+++
Sbjct: 212 ADNLYTVHSDVWAFGVTMWEIMT 234

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 98.1 bits (245), Expect = 8e-23
 Identities = 50/200 (25%), Positives = 78/200 (39%), Gaps = 52/200 (26%)

Query: 344 SVYRATIDGK------VLAVKKIKEDVTE-------ELRILQRINHANLVKLMGVSSDSQ 390
           SV     D        V+AVKK++    E       E+ IL+ + H N+VK  GV   + 
Sbjct: 25  SVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAG 84

Query: 391 GNR-FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQ 449
                L+ EY   GSL  +L    +          +   + L+    +  G++Y+     
Sbjct: 85  RRNLKLIMEYLPYGSLRDYLQKHKER---------IDHIKLLQYTSQICKGMEYLGTK-- 133

Query: 450 PSIVHRDIRTNNIQLDSRFKAKIANFSLA----------APATNDVMP------------ 487
              +HRD+ T NI +++  + KI +F L                   P            
Sbjct: 134 -RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTES 192

Query: 488 KF----DVFAFGVVLLELLS 503
           KF    DV++FGVVL EL +
Sbjct: 193 KFSVASDVWSFGVVLYELFT 212

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 98.1 bits (245), Expect = 8e-23
 Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 49/204 (24%)

Query: 345 VYRATIDGKVL-------AVKKIKE-------DVTEELRILQRINHANLVKLMGVSSDSQ 390
           V+ A              AVK +K+       D   E  +L  + H ++VK  GV  D  
Sbjct: 31  VFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGD 90

Query: 391 GNRFLVYEYAENGSLDKWL------HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYM 444
               +V+EY ++G L+K+L                 +   L  SQ L +A  +A+G+ Y+
Sbjct: 91  -PLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYL 149

Query: 445 HEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP-------- 487
                   VHRD+ T N  + +    KI +F ++             + ++P        
Sbjct: 150 ASQ---HFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPES 206

Query: 488 ----KF----DVFAFGVVLLELLS 503
               KF    DV++FGV+L E+ +
Sbjct: 207 IMYRKFTTESDVWSFGVILWEIFT 230

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 97.3 bits (243), Expect = 1e-22
 Identities = 46/224 (20%), Positives = 80/224 (35%), Gaps = 54/224 (24%)

Query: 329 MESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKI---------KEDVTEELR 369
           M S     E Y +             +     DGK+L  K++         K+ +  E+ 
Sbjct: 1   MPSRA---EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVN 57

Query: 370 ILQRINHANLVKLMGVSSDSQGNRF-LVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWS 428
           +L+ + H N+V+      D       +V EY E G L   +   +K         +L   
Sbjct: 58  LLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQ------YLDEE 111

Query: 429 QRLRVALDVANGLQYMHE--HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM 486
             LRV   +   L+  H       +++HRD++  N+ LD +   K+ +F LA    +D  
Sbjct: 112 FVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTS 171

Query: 487 -----------------------PKFDVFAFGVVLLELLSGKKA 507
                                   K D+++ G +L EL +    
Sbjct: 172 FAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPP 215

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 98.1 bits (245), Expect = 2e-22
 Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 48/203 (23%)

Query: 345 VYRATIDGKVL-------AVKKIKE-------DVTEELRILQRINHANLVKLMGVSSDSQ 390
           V+ A     +        AVK +KE       D   E  +L  + H ++V+  GV ++ +
Sbjct: 57  VFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGR 116

Query: 391 GNRFLVYEYAENGSLDKWL-----HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMH 445
               +V+EY  +G L+++L       K  +     +   L   Q L VA  VA G+ Y+ 
Sbjct: 117 -PLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA 175

Query: 446 EHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP--------- 487
                  VHRD+ T N  +      KI +F ++               ++P         
Sbjct: 176 GL---HFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESI 232

Query: 488 ---KF----DVFAFGVVLLELLS 503
              KF    DV++FGVVL E+ +
Sbjct: 233 LYRKFTTESDVWSFGVVLWEIFT 255

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 97.8 bits (244), Expect = 2e-22
 Identities = 50/200 (25%), Positives = 78/200 (39%), Gaps = 52/200 (26%)

Query: 344 SVYRATIDGK------VLAVKKIKEDVTE-------ELRILQRINHANLVKLMGVSSDSQ 390
           SV     D        V+AVKK++    E       E+ IL+ + H N+VK  GV   + 
Sbjct: 56  SVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAG 115

Query: 391 GNR-FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQ 449
                L+ EY   GSL  +L    +          +   + L+    +  G++Y+     
Sbjct: 116 RRNLKLIMEYLPYGSLRDYLQKHKER---------IDHIKLLQYTSQICKGMEYLGTK-- 164

Query: 450 PSIVHRDIRTNNIQLDSRFKAKIANFSLA----------APATNDVMP------------ 487
              +HRD+ T NI +++  + KI +F L                   P            
Sbjct: 165 -RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTES 223

Query: 488 KF----DVFAFGVVLLELLS 503
           KF    DV++FGVVL EL +
Sbjct: 224 KFSVASDVWSFGVVLYELFT 243

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 96.5 bits (241), Expect = 2e-22
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 44/190 (23%)

Query: 345 VYRATIDGKVL-AVKKIKEDVTE------ELRILQRINHANLVKLMGVSSDSQGNRFLVY 397
           V+      K   A+K I+E          E  ++ +++H  LV+L GV  +      LV 
Sbjct: 24  VHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA-PICLVT 82

Query: 398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
           E+ E+G L  +L  +                  L + LDV  G+ Y+ E     ++HRD+
Sbjct: 83  EFMEHGCLSDYLRTQRGL---------FAAETLLGMCLDVCEGMAYLEEA---CVIHRDL 130

Query: 458 RTNNIQLDSRFKAKIANFSLAAPATNDV-------------MP-------KF----DVFA 493
              N  +      K+++F +     +D                       ++    DV++
Sbjct: 131 AARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWS 190

Query: 494 FGVVLLELLS 503
           FGV++ E+ S
Sbjct: 191 FGVLMWEVFS 200

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 97.3 bits (243), Expect = 2e-22
 Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 52/207 (25%)

Query: 345 VYRATIDG--------KVLAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSS 387
           V  A   G         V AVK +KE  T         EL+IL  I +H N+V L+G  +
Sbjct: 43  VIEADAFGIDKTATCRTV-AVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACT 101

Query: 388 DSQGNRFLVYEYAENGSLDKWL------HPKSKSSSSSGSVIFLTWSQRLRVALDVANGL 441
              G   ++ E+ + G+L  +L          K +       FLT    +  +  VA G+
Sbjct: 102 KPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGM 161

Query: 442 QYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP----- 487
           +++   A    +HRD+   NI L  +   KI +F LA             +  +P     
Sbjct: 162 EFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMA 218

Query: 488 -------KF----DVFAFGVVLLELLS 503
                   +    DV++FGV+L E+ S
Sbjct: 219 PETIFDRVYTIQSDVWSFGVLLWEIFS 245

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 99.8 bits (249), Expect = 2e-22
 Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 44/191 (23%)

Query: 345 VYRATIDGKVL--AVKKIKEDVTE------ELRILQRINHANLVKLMGVSSDSQGNRFLV 396
           VY        L  AVK +KED  E      E  +++ I H NLV+L+GV +      +++
Sbjct: 236 VYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP-PFYII 294

Query: 397 YEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            E+   G+L  +L   ++          ++    L +A  +++ ++Y+ +    + +HR+
Sbjct: 295 TEFMTYGNLLDYLRECNRQE--------VSAVVLLYMATQISSAMEYLEKK---NFIHRN 343

Query: 457 IRTNNIQLDSRFKAKIANFSLA--------APATNDVMP----------------KFDVF 492
           +   N  +      K+A+F L+                P                K DV+
Sbjct: 344 LAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVW 403

Query: 493 AFGVVLLELLS 503
           AFGV+L E+ +
Sbjct: 404 AFGVLLWEIAT 414

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 96.2 bits (240), Expect = 3e-22
 Identities = 44/212 (20%), Positives = 80/212 (37%), Gaps = 57/212 (26%)

Query: 341 IGK----SVYRAT--IDGKVLAVKKI---KEDVTEELRILQRINHANLVKL--------- 382
           IG      V++A   IDGK   +K++    E    E++ L +++H N+V           
Sbjct: 19  IGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAEREVKALAKLDHVNIVHYNGCWDGFDY 78

Query: 383 ------MGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALD 436
                    S       F+  E+ + G+L++W+  +            L     L +   
Sbjct: 79  DPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGE--------KLDKVLALELFEQ 130

Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM---------- 486
           +  G+ Y+H      +++RD++ +NI L    + KI +F L     ND            
Sbjct: 131 ITKGVDYIHSK---KLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRY 187

Query: 487 ------------PKFDVFAFGVVLLELLSGKK 506
                        + D++A G++L ELL    
Sbjct: 188 MSPEQISSQDYGKEVDLYALGLILAELLHVCD 219

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 97.0 bits (242), Expect = 3e-22
 Identities = 38/202 (18%), Positives = 74/202 (36%), Gaps = 50/202 (24%)

Query: 345 VYRATIDGK-----VLAVKKIKEDVT---------EELRILQRINHANLVKLMGVSSDSQ 390
           V    +  +      +AVK +K D +          E   ++  +H N+++L+GV  +  
Sbjct: 50  VMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMS 109

Query: 391 ----GNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE 446
                   ++  + + G L  +L      S        +     L+  +D+A G++Y+  
Sbjct: 110 SQGIPKPMVILPFMKYGDLHTYL----LYSRLETGPKHIPLQTLLKFMVDIALGMEYLSN 165

Query: 447 HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP---------- 487
               + +HRD+   N  L       +A+F L+                MP          
Sbjct: 166 R---NFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLA 222

Query: 488 --KF----DVFAFGVVLLELLS 503
              +    DV+AFGV + E+ +
Sbjct: 223 DRVYTSKSDVWAFGVTMWEIAT 244

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 96.1 bits (240), Expect = 3e-22
 Identities = 44/190 (23%), Positives = 76/190 (40%), Gaps = 44/190 (23%)

Query: 345 VYRATIDGKVL-AVKKIKEDVTE------ELRILQRINHANLVKLMGVSSDSQGNRFLVY 397
           V      G+   A+K IKE          E +++  ++H  LV+L GV +  +   F++ 
Sbjct: 40  VKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQR-PIFIIT 98

Query: 398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
           EY  NG L  +L                   Q L +  DV   ++Y+        +HRD+
Sbjct: 99  EYMANGCLLNYLREMRHR---------FQTQQLLEMCKDVCEAMEYLESK---QFLHRDL 146

Query: 458 RTNNIQLDSRFKAKIANFSLAAPATNDV-------------MP-------KF----DVFA 493
              N  ++ +   K+++F L+    +D               P       KF    D++A
Sbjct: 147 AARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWA 206

Query: 494 FGVVLLELLS 503
           FGV++ E+ S
Sbjct: 207 FGVLMWEIYS 216

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 95.8 bits (239), Expect = 4e-22
 Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 44/191 (23%)

Query: 345 VYRATIDGKVL--AVKKIKEDVTE------ELRILQRINHANLVKLMGVSSDSQGNRFLV 396
           VY        L  AVK +KED  E      E  +++ I H NLV+L+GV +      +++
Sbjct: 29  VYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPF-YII 87

Query: 397 YEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            E+   G+L  +L   ++          ++    L +A  +++ ++Y+ +    + +HRD
Sbjct: 88  TEFMTYGNLLDYLRECNRQE--------VSAVVLLYMATQISSAMEYLEKK---NFIHRD 136

Query: 457 IRTNNIQLDSRFKAKIANFSLAAPATNDV--------MP------------KF----DVF 492
           +   N  +      K+A+F L+   T D          P            KF    DV+
Sbjct: 137 LAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVW 196

Query: 493 AFGVVLLELLS 503
           AFGV+L E+ +
Sbjct: 197 AFGVLLWEIAT 207

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 95.8 bits (239), Expect = 6e-22
 Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 60/214 (28%)

Query: 345 VYRATIDG--------KVLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSD 388
           V +AT            V AVK +KE+ +         E  +L+++NH +++KL G  S 
Sbjct: 39  VVKATAFHLKGRAGYTTV-AVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQ 97

Query: 389 SQGNRFLVYEYAENGSLDKWL--------------HPKSKSSSSSGSVIFLTWSQRLRVA 434
             G   L+ EYA+ GSL  +L                ++ SS        LT    +  A
Sbjct: 98  -DGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFA 156

Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDV 485
             ++ G+QY+   A+  +VHRD+   NI +    K KI++F L+            +   
Sbjct: 157 WQISQGMQYL---AEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGR 213

Query: 486 MP------------KF----DVFAFGVVLLELLS 503
           +P             +    DV++FGV+L E+++
Sbjct: 214 IPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVT 247

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 96.2 bits (240), Expect = 6e-22
 Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 51/205 (24%)

Query: 345 VYRATIDG--------KVLAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSS 387
           V  AT  G        KV AVK +K             EL+I+  +  H N+V L+G  +
Sbjct: 62  VVEATAFGLGKEDAVLKV-AVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACT 120

Query: 388 DSQGNRFLVYEYAENGSLDKWLHPKSKS----SSSSGSVIFLTWSQRLRVALDVANGLQY 443
              G   ++ EY   G L  +L  KS+      + + +    +    L  +  VA G+ +
Sbjct: 121 H-GGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAF 179

Query: 444 MHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP------- 487
           +   A  + +HRD+   N+ L +   AKI +F LA             N  +P       
Sbjct: 180 L---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPE 236

Query: 488 -----KF----DVFAFGVVLLELLS 503
                 +    DV+++G++L E+ S
Sbjct: 237 SIFDCVYTVQSDVWSYGILLWEIFS 261

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 96.2 bits (240), Expect = 8e-22
 Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 60/214 (28%)

Query: 345 VYRATIDG--------KVLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSD 388
           V++A   G         V AVK +KE+ +         E  ++   ++ N+VKL+GV + 
Sbjct: 63  VFQARAPGLLPYEPFTMV-AVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAV 121

Query: 389 SQGNRFLVYEYAENGSLDKWL--------------HPKSKSSSSSGSVIFLTWSQRLRVA 434
            +    L++EY   G L+++L                 +++  SS     L+ +++L +A
Sbjct: 122 GK-PMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIA 180

Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDV 485
             VA G+ Y+ E      VHRD+ T N  +      KIA+F L+             ND 
Sbjct: 181 RQVAAGMAYLSER---KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDA 237

Query: 486 MP------------KF----DVFAFGVVLLELLS 503
           +P            ++    DV+A+GVVL E+ S
Sbjct: 238 IPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFS 271

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 95.8 bits (239), Expect = 8e-22
 Identities = 56/203 (27%), Positives = 80/203 (39%), Gaps = 52/203 (25%)

Query: 345 VYRATIDG--------KVLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSD 388
           VY   + G        +V AVK + E  +E        E  I+ + NH N+V+ +GVS  
Sbjct: 46  VYEGQVSGMPNDPSPLQV-AVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQ 104

Query: 389 SQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA 448
           S   RF++ E    G L  +L       S   S   L     L VA D+A G QY+ E+ 
Sbjct: 105 SL-PRFILMELMAGGDLKSFLRETRPRPSQPSS---LAMLDLLHVARDIACGCQYLEEN- 159

Query: 449 QPSIVHRDIRTNNI---QLDSRFKAKIANFSLA---------APATNDVMP--------- 487
               +HRDI   N           AKI +F +A               ++P         
Sbjct: 160 --HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAF 217

Query: 488 ---KF----DVFAFGVVLLELLS 503
               F    D ++FGV+L E+ S
Sbjct: 218 MEGIFTSKTDTWSFGVLLWEIFS 240

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 95.4 bits (238), Expect = 1e-21
 Identities = 34/185 (18%), Positives = 74/185 (40%), Gaps = 48/185 (25%)

Query: 356 AVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK 407
           A+K+++E  +         E  ++  +++ ++ +L+G+   S     L+ +    G L  
Sbjct: 48  AIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST--VQLITQLMPFGCLLD 105

Query: 408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR 467
           ++     +         +     L   + +A G+ Y+ +     +VHRD+   N+ + + 
Sbjct: 106 YVREHKDN---------IGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTP 153

Query: 468 FKAKIANFSLA---------APATNDVMP------------KF----DVFAFGVVLLELL 502
              KI +F LA           A    +P             +    DV+++GV + EL+
Sbjct: 154 QHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELM 213

Query: 503 S-GKK 506
           + G K
Sbjct: 214 TFGSK 218

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 94.6 bits (236), Expect = 1e-21
 Identities = 51/209 (24%), Positives = 78/209 (37%), Gaps = 55/209 (26%)

Query: 345 VYRATIDG--------KVLAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSS 387
           V  AT  G         V AVK +K             EL++L  + NH N+V L+G  +
Sbjct: 39  VVEATAYGLIKSDAAMTV-AVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT 97

Query: 388 DSQGNRFLVYEYAENGSLDKWL--------HPKSKSSSSSGSVIFLTWSQRLRVALDVAN 439
              G   ++ EY   G L  +L          K+  +      + L     L  +  VA 
Sbjct: 98  I-GGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAK 156

Query: 440 GLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP--- 487
           G+ ++   A  + +HRD+   NI L      KI +F LA             N  +P   
Sbjct: 157 GMAFL---ASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKW 213

Query: 488 ---------KF----DVFAFGVVLLELLS 503
                     +    DV+++G+ L EL S
Sbjct: 214 MAPESIFNCVYTFESDVWSYGIFLWELFS 242

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 95.1 bits (237), Expect = 2e-21
 Identities = 51/214 (23%), Positives = 85/214 (39%), Gaps = 60/214 (28%)

Query: 345 VYRATIDG--------KVLAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGVSS 387
           V  AT  G        +V AVK +KE            EL+++ ++ +H N+V L+G  +
Sbjct: 61  VMNATAYGISKTGVSIQV-AVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACT 119

Query: 388 DSQGNRFLVYEYAENGSLDKWL-------------HPKSKSSSSSGSVIFLTWSQRLRVA 434
              G  +L++EY   G L  +L             +   K       +  LT+   L  A
Sbjct: 120 L-SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFA 178

Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDV 485
             VA G++++      S VHRD+   N+ +      KI +F LA             N  
Sbjct: 179 YQVAKGMEFL---EFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNAR 235

Query: 486 MP------------KF----DVFAFGVVLLELLS 503
           +P             +    DV+++G++L E+ S
Sbjct: 236 LPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFS 269

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 95.5 bits (238), Expect = 2e-21
 Identities = 55/202 (27%), Positives = 79/202 (39%), Gaps = 50/202 (24%)

Query: 345 VYRATIDGKV-------LAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDS 389
           VY   + G         +AVK + E  +E        E  I+ + NH N+V+ +GVS  S
Sbjct: 87  VYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQS 146

Query: 390 QGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQ 449
              RF++ E    G L  +L       S   S   L     L VA D+A G QY+ E+  
Sbjct: 147 L-PRFILLELMAGGDLKSFLRETRPRPSQPSS---LAMLDLLHVARDIACGCQYLEEN-- 200

Query: 450 PSIVHRDIRTNNI---QLDSRFKAKIANFSLA---------APATNDVMP---------- 487
              +HRDI   N           AKI +F +A               ++P          
Sbjct: 201 -HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFM 259

Query: 488 --KF----DVFAFGVVLLELLS 503
              F    D ++FGV+L E+ S
Sbjct: 260 EGIFTSKTDTWSFGVLLWEIFS 281

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 96.0 bits (239), Expect = 3e-21
 Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 44/190 (23%)

Query: 345 VYRATIDGKVL-AVKKIKEDVTE------ELRILQRINHANLVKLMGVSSDSQGNRFLVY 397
           V+  T +G    A+K +K           E ++++++ H  LV+L  V S+     ++V 
Sbjct: 200 VWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP--IYIVT 257

Query: 398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
           EY   GSL  +L  ++          +L   Q + +A  +A+G+ Y+      + VHRD+
Sbjct: 258 EYMSKGSLLDFLKGETGK--------YLRLPQLVDMAAQIASGMAYVERM---NYVHRDL 306

Query: 458 RTNNIQLDSRFKAKIANFSLA--------APATNDVMP----------------KFDVFA 493
           R  NI +      K+A+F LA                P                K DV++
Sbjct: 307 RAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 366

Query: 494 FGVVLLELLS 503
           FG++L EL +
Sbjct: 367 FGILLTELTT 376

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 92.7 bits (231), Expect = 4e-21
 Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 48/192 (25%)

Query: 345 VYRATIDGKVL-AVKKIKEDVTE------ELRILQRINHANLVKLMGVSSDSQGNRFLVY 397
           V+    +G    AVK +K+          E  +++++ H  LV+L  V +      +++ 
Sbjct: 29  VWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEP--IYIIT 86

Query: 398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
           EY ENGSL  +L   S           LT ++ L +A  +A G+ ++ E    + +HRD+
Sbjct: 87  EYMENGSLVDFLKTPSGIK--------LTINKLLDMAAQIAEGMAFIEER---NYIHRDL 135

Query: 458 RTNNIQLDSRFKAKIANFSLA---------------------AP-ATNDVMPKF----DV 491
           R  NI +      KIA+F LA                     AP A N     F    DV
Sbjct: 136 RAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINY--GTFTIKSDV 193

Query: 492 FAFGVVLLELLS 503
           ++FG++L E+++
Sbjct: 194 WSFGILLTEIVT 205

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 95.5 bits (238), Expect = 5e-21
 Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 48/192 (25%)

Query: 345 VYRATIDGKVL-AVKKIKEDVTE------ELRILQRINHANLVKLMGVSSDSQGNRFLVY 397
           V+ AT +     AVK +K           E  +++ + H  LVKL  V +      +++ 
Sbjct: 204 VWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEP--IYIIT 261

Query: 398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
           E+   GSL  +L     S             + +  +  +A G+ ++ +    + +HRD+
Sbjct: 262 EFMAKGSLLDFLKSDEGS--------KQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDL 310

Query: 458 RTNNIQLDSRFKAKIANFSLA---------------------AP-ATNDVMPKF----DV 491
           R  NI + +    KIA+F LA                     AP A N     F    DV
Sbjct: 311 RAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFG--SFTIKSDV 368

Query: 492 FAFGVVLLELLS 503
           ++FG++L+E+++
Sbjct: 369 WSFGILLMEIVT 380

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 93.5 bits (233), Expect = 5e-21
 Identities = 69/287 (24%), Positives = 113/287 (39%), Gaps = 72/287 (25%)

Query: 345 VYRATIDGKVL-AVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNRFL 395
             R      V  A+K +K   TE        E  I+ + +H N+++L GV +  +    +
Sbjct: 69  RLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLA-MI 127

Query: 396 VYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHR 455
           V EY ENGSLD +L                T  Q + +   V  G++Y+ +      VHR
Sbjct: 128 VTEYMENGSLDTFLRTHDGQ---------FTIMQLVGMLRGVGAGMRYLSDL---GYVHR 175

Query: 456 DIRTNNIQLDSRFKAKIANFSLAAPATNDV----------MP------------KF---- 489
           D+   N+ +DS    K+++F L+    +D           +P             F    
Sbjct: 176 DLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSAS 235

Query: 490 DVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLK-VEEKREERLRNWMDPNLES 547
           DV++FGVV+ E+L+ G++      N          R+V+  VE     R    +      
Sbjct: 236 DVWSFGVVMWEVLAYGERPYWNMTN----------RDVISSVE--EGYR----LPA---- 275

Query: 548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTETLER 594
             P+    +L  L   C       RP  +++V  L  L +S E+L  
Sbjct: 276 --PMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPESLRA 320

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 95.7 bits (238), Expect = 6e-21
 Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 44/190 (23%)

Query: 345 VYRATIDGKVL-AVKKIKEDVTE------ELRILQRINHANLVKLMGVSSDSQGNRFLVY 397
           V+  T +G    A+K +K           E ++++++ H  LV+L  V S+     ++V 
Sbjct: 283 VWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEP--IYIVT 340

Query: 398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
           EY   GSL  +L         +G   +L   Q + +A  +A+G+ Y+      + VHRD+
Sbjct: 341 EYMSKGSLLDFLK------GETGK--YLRLPQLVDMAAQIASGMAYVERM---NYVHRDL 389

Query: 458 RTNNIQLDSRFKAKIANFSLA--------APATNDVMP----------------KFDVFA 493
           R  NI +      K+A+F LA                P                K DV++
Sbjct: 390 RAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 449

Query: 494 FGVVLLELLS 503
           FG++L EL +
Sbjct: 450 FGILLTELTT 459

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 92.4 bits (230), Expect = 9e-21
 Identities = 41/225 (18%), Positives = 78/225 (34%), Gaps = 64/225 (28%)

Query: 336 SEHYSIGK--------SVYRA--TIDGKVLAVKKI-------KEDVTEELRILQRINHAN 378
           ++HY   +         V       DG   A+K+I       +E+   E  + +  NH N
Sbjct: 28  NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPN 87

Query: 379 LVKLMGVSSDSQGNR---FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVAL 435
           +++L+      +G +   +L+  + + G+L   +       +      FLT  Q L + L
Sbjct: 88  ILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGN------FLTEDQILWLLL 141

Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM--------- 486
            +  GL+ +H        HRD++  NI L    +  + +      A   V          
Sbjct: 142 GICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQ 198

Query: 487 --------------------------PKFDVFAFGVVLLELLSGK 505
                                      + DV++ G VL  ++ G+
Sbjct: 199 DWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGE 243

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 93.6 bits (233), Expect = 9e-21
 Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 55/209 (26%)

Query: 345 VYRATIDG----------KVLAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGV 385
           V  A   G           V AVK +K+D TE        E+ +++ I  H N++ L+G 
Sbjct: 97  VVMAEAVGIDKDKPKEAVTV-AVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGA 155

Query: 386 SSDSQGNRFLVYEYAENGSLDKWL------HPKSKSSSSSGSVIFLTWSQRLRVALDVAN 439
            +   G  +++ EYA  G+L ++L        +     +      +T+   +     +A 
Sbjct: 156 CTQ-DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLAR 214

Query: 440 GLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP--- 487
           G++Y+   A    +HRD+   N+ +      KIA+F LA            TN  +P   
Sbjct: 215 GMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKW 271

Query: 488 ---------KF----DVFAFGVVLLELLS 503
                     +    DV++FGV++ E+ +
Sbjct: 272 MAPEALFDRVYTHQSDVWSFGVLMWEIFT 300

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 92.7 bits (231), Expect = 1e-20
 Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 55/209 (26%)

Query: 345 VYRATIDG----------KVLAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGV 385
           V  A   G           V AVK +K+D TE        E+ +++ I  H N++ L+G 
Sbjct: 51  VVMAEAVGIDKDKPKEAVTV-AVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGA 109

Query: 386 SSDSQGNRFLVYEYAENGSLDKWL------HPKSKSSSSSGSVIFLTWSQRLRVALDVAN 439
            +   G  +++ EYA  G+L ++L        +     +      +T+   +     +A 
Sbjct: 110 CTQ-DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLAR 168

Query: 440 GLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP--- 487
           G++Y+   A    +HRD+   N+ +      KIA+F LA            TN  +P   
Sbjct: 169 GMEYL---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKW 225

Query: 488 ---------KF----DVFAFGVVLLELLS 503
                     +    DV++FGV++ E+ +
Sbjct: 226 MAPEALFDRVYTHQSDVWSFGVLMWEIFT 254

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 91.6 bits (228), Expect = 1e-20
 Identities = 38/198 (19%), Positives = 73/198 (36%), Gaps = 46/198 (23%)

Query: 343 KSVYRA--TIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQG 391
           K+VY+   T     +A  +++         +   EE  +L+ + H N+V+       +  
Sbjct: 40  KTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVK 99

Query: 392 NRFLVY---EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA 448
            +  +    E   +G+L  +L  + K          +           +  GLQ++H   
Sbjct: 100 GKKCIVLVTELMTSGTLKTYLK-RFKV---------MKIKVLRSWCRQILKGLQFLHTR- 148

Query: 449 QPSIVHRDIRTNNIQLDSRF-KAKIANFSLAAPATNDVM--------------------P 487
            P I+HRD++ +NI +       KI +  LA                             
Sbjct: 149 TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEEKYDE 208

Query: 488 KFDVFAFGVVLLELLSGK 505
             DV+AFG+ +LE+ + +
Sbjct: 209 SVDVYAFGMCMLEMATSE 226

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 92.0 bits (229), Expect = 2e-20
 Identities = 64/275 (23%), Positives = 118/275 (42%), Gaps = 71/275 (25%)

Query: 356 AVKKIKEDVTEELR--------ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK 407
           A+K +K   TE+ R        I+ + +H N+++L GV S  +    ++ EY ENG+LDK
Sbjct: 77  AIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPM-MIITEYMENGALDK 135

Query: 408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR 467
           +L  K             +  Q + +   +A G++Y+      + VHRD+   NI ++S 
Sbjct: 136 FLREKDGE---------FSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSN 183

Query: 468 FKAKIANFSLAAPATNDV----------MP------------KF----DVFAFGVVLLEL 501
              K+++F L+    +D           +P            KF    DV++FG+V+ E+
Sbjct: 184 LVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEV 243

Query: 502 LS-GKKATRTTENGKTAVLWKEIREVLK-VEEKREERLRNWMDPNLESFYPIDGALSLAT 559
           ++ G++      N           EV+K +      R    +        P+D   ++  
Sbjct: 244 MTYGERPYWELSN----------HEVMKAIN--DGFR----LPT------PMDCPSAIYQ 281

Query: 560 LARACTMDKSLSRPNMAEVVFNLSVLTQSTETLER 594
           L   C   +   RP  A++V  L  L ++ ++L+ 
Sbjct: 282 LMMQCWQQERARRPKFADIVSILDKLIRAPDSLKT 316

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 91.4 bits (227), Expect = 2e-20
 Identities = 45/230 (19%), Positives = 80/230 (34%), Gaps = 63/230 (27%)

Query: 329 MESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK--------EDVTEELRI 370
           M S    +  + +          +V+R      G + A+K           +    E  +
Sbjct: 1   MGSQSTSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEV 60

Query: 371 LQRINHANLVKLMGV-SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQ 429
           L+++NH N+VKL  +    +  ++ L+ E+   GSL   L           +   L  S+
Sbjct: 61  LKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEP-------SNAYGLPESE 113

Query: 430 RLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL----DSRFKAKIANFSLAAPATNDV 485
            L V  DV  G+ ++ E+    IVHR+I+  NI      D +   K+ +F  A    +D 
Sbjct: 114 FLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDE 170

Query: 486 M------------------------------PKFDVFAFGVVLLELLSGK 505
                                             D+++ GV      +G 
Sbjct: 171 QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGS 220

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 52/184 (28%)

Query: 356 AVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK 407
           A+K +K+   +        E +I+ ++++  +V+L+GV         LV E A  G L K
Sbjct: 41  AIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEA--LMLVMEMAGGGPLHK 98

Query: 408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR 467
           +L  K +          +  S    +   V+ G++Y+ E    + VHRD+   N+ L +R
Sbjct: 99  FLVGKREE---------IPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNR 146

Query: 468 FKAKIANFSLA-----------------------AP-ATNDVMPKF----DVFAFGVVLL 499
             AKI++F L+                       AP   N    KF    DV+++GV + 
Sbjct: 147 HYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINF--RKFSSRSDVWSYGVTMW 204

Query: 500 ELLS 503
           E LS
Sbjct: 205 EALS 208

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 92.0 bits (229), Expect = 3e-20
 Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 55/209 (26%)

Query: 345 VYRATIDG----------KVLAVKKIKEDVTE--------ELRILQRI-NHANLVKLMGV 385
           V  A   G          KV AVK +K D TE        E+ +++ I  H N++ L+G 
Sbjct: 85  VVLAEAIGLDKDKPNRVTKV-AVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGA 143

Query: 386 SSDSQGNRFLVYEYAENGSLDKWL------HPKSKSSSSSGSVIFLTWSQRLRVALDVAN 439
            +   G  +++ EYA  G+L ++L        +   + S      L+    +  A  VA 
Sbjct: 144 CTQ-DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVAR 202

Query: 440 GLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP--- 487
           G++Y+   A    +HRD+   N+ +      KIA+F LA            TN  +P   
Sbjct: 203 GMEYL---ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKW 259

Query: 488 ---------KF----DVFAFGVVLLELLS 503
                     +    DV++FGV+L E+ +
Sbjct: 260 MAPEALFDRIYTHQSDVWSFGVLLWEIFT 288

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 90.5 bits (225), Expect = 5e-20
 Identities = 32/181 (17%), Positives = 72/181 (39%), Gaps = 47/181 (25%)

Query: 356 AVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK 407
           A+K+++E  +         E  ++  +++ ++ +L+G+   S     L+ +    G L  
Sbjct: 48  AIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST--VQLITQLMPFGCLLD 105

Query: 408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR 467
           ++     +         +     L   + +A G+ Y+ +     +VHRD+   N+ + + 
Sbjct: 106 YVREHKDN---------IGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTP 153

Query: 468 FKAKIANFSLA---------APATNDVMP------------KF----DVFAFGVVLLELL 502
              KI +F LA           A    +P             +    DV+++GV + EL+
Sbjct: 154 QHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELM 213

Query: 503 S 503
           +
Sbjct: 214 T 214

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 89.2 bits (222), Expect = 6e-20
 Identities = 40/182 (21%), Positives = 73/182 (40%), Gaps = 50/182 (27%)

Query: 356 AVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK 407
           A+K  K   ++        E   +++ +H ++VKL+GV +++    +++ E    G L  
Sbjct: 47  AIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENP--VWIIMELCTLGELRS 104

Query: 408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR 467
           +L  +  S         L  +  +  A  ++  L Y+        VHRDI   N+ + S 
Sbjct: 105 FLQVRKYS---------LDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSN 152

Query: 468 FKAKIANFSLA---------------------AP-ATNDVMPKF----DVFAFGVVLLEL 501
              K+ +F L+                     AP + N    +F    DV+ FGV + E+
Sbjct: 153 DCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINF--RRFTSASDVWMFGVCMWEI 210

Query: 502 LS 503
           L 
Sbjct: 211 LM 212

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 90.2 bits (224), Expect = 9e-20
 Identities = 46/205 (22%), Positives = 82/205 (40%), Gaps = 50/205 (24%)

Query: 341 IGK----SVYRA--TIDGKVLAVKKI---------KEDVTEELRILQRINHANLVKLMGV 385
           IG+           T DG+   +K+I         +E+   E+ +L  + H N+V+    
Sbjct: 32  IGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRE- 90

Query: 386 SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMH 445
           S +  G+ ++V +Y E G L K ++ +                Q L   + +   L+++H
Sbjct: 91  SFEENGSLYIVMDYCEGGDLFKRINAQKGV--------LFQEDQILDWFVQICLALKHVH 142

Query: 446 EHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM------------------- 486
           +     I+HRDI++ NI L      ++ +F +A    + V                    
Sbjct: 143 DR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICEN 199

Query: 487 ----PKFDVFAFGVVLLELLSGKKA 507
                K D++A G VL EL + K A
Sbjct: 200 KPYNNKSDIWALGCVLYELCTLKHA 224

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 88.8 bits (221), Expect = 1e-19
 Identities = 42/182 (23%), Positives = 72/182 (39%), Gaps = 50/182 (27%)

Query: 356 AVKKIKEDVT--------EELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK 407
           AVK  K+D T         E  I++ ++H ++VKL+G+  +     +++ E    G L  
Sbjct: 44  AVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEP--TWIIMELYPYGELGH 101

Query: 408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR 467
           +L     S         L     +  +L +   + Y+      + VHRDI   NI + S 
Sbjct: 102 YLERNKNS---------LKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASP 149

Query: 468 FKAKIANFSLA---------------------AP-ATNDVMPKF----DVFAFGVVLLEL 501
              K+ +F L+                     +P + N    +F    DV+ F V + E+
Sbjct: 150 ECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINF--RRFTTASDVWMFAVCMWEI 207

Query: 502 LS 503
           LS
Sbjct: 208 LS 209

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 38/181 (20%), Positives = 75/181 (41%), Gaps = 47/181 (25%)

Query: 356 AVKKIKEDVT--------EELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK 407
            +K I++           + +  +  ++HA++V+L+G+   S     LV +Y   GSL  
Sbjct: 46  CIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSS--LQLVTQYLPLGSLLD 103

Query: 408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR 467
            +     +         L     L   + +A G+ Y+ EH    +VHR++   N+ L S 
Sbjct: 104 HVRQHRGA---------LGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSP 151

Query: 468 FKAKIANFSLA---------APATNDVMP------------KF----DVFAFGVVLLELL 502
            + ++A+F +A            +    P            K+    DV+++GV + EL+
Sbjct: 152 SQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELM 211

Query: 503 S 503
           +
Sbjct: 212 T 212

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 88.5 bits (220), Expect = 1e-19
 Identities = 52/219 (23%), Positives = 78/219 (35%), Gaps = 61/219 (27%)

Query: 356 AVKKIKEDVT----------EELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSL 405
           AVK +K DV            E+  +  ++H NL++L GV         +V E A  GSL
Sbjct: 50  AVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP--MKMVTELAPLGSL 107

Query: 406 DKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD 465
              L                      R A+ VA G+ Y+        +HRD+   N+ L 
Sbjct: 108 LDRLRKHQGH---------FLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLA 155

Query: 466 SRFKAKIANFSLA--APATNDV--------MP------------KF----DVFAFGVVLL 499
           +R   KI +F L    P  +D         +P             F    D + FGV L 
Sbjct: 156 TRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLW 215

Query: 500 ELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERL 537
           E+ + G++                  ++L   +K  ERL
Sbjct: 216 EMFTYGQEPWIGLNG----------SQILHKIDKEGERL 244

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 88.6 bits (220), Expect = 2e-19
 Identities = 38/222 (17%), Positives = 76/222 (34%), Gaps = 70/222 (31%)

Query: 341 IGK----SVYRAT--IDGKVLAVKKI--------KEDVTEELRILQRINHANLVKLMGVS 386
           +G+     V+ A   +D    A+K+I        +E V  E++ L ++ H  +V+     
Sbjct: 13  LGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAW 72

Query: 387 SDSQGNR-----------FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVAL 435
            +                ++  +     +L  W++ +        SV        L + L
Sbjct: 73  LEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVC-------LHIFL 125

Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM--------- 486
            +A  ++++H      ++HRD++ +NI        K+ +F L      D           
Sbjct: 126 QIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMP 182

Query: 487 --------------------------PKFDVFAFGVVLLELL 502
                                      K D+F+ G++L ELL
Sbjct: 183 AYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELL 224

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 45/199 (22%), Positives = 83/199 (41%), Gaps = 54/199 (27%)

Query: 344 SVYRATIDGKVL----AVKKIKEDVTE---------ELRILQRINHANLVKLMGVSSDSQ 390
           +V +     K +    AVK +K +  +         E  ++Q++++  +V+++G+     
Sbjct: 32  TVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAES 91

Query: 391 GNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
               LV E AE G L+K+L               +     + +   V+ G++Y+ E    
Sbjct: 92  --WMLVMEMAELGPLNKYLQQNRH----------VKDKNIIELVHQVSMGMKYLEES--- 136

Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDV----------MP------------K 488
           + VHRD+   N+ L ++  AKI++F L+     D            P            K
Sbjct: 137 NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYK 196

Query: 489 F----DVFAFGVVLLELLS 503
           F    DV++FGV++ E  S
Sbjct: 197 FSSKSDVWSFGVLMWEAFS 215

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 51/184 (27%)

Query: 356 AVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK 407
           A+K +K   TE        E  I+ + +H N+++L GV + S+    +V EY ENGSLD 
Sbjct: 77  AIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPV-MIVTEYMENGSLDS 135

Query: 408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR 467
           +L                T  Q + +   +A+G++Y+ +      VHRD+   NI ++S 
Sbjct: 136 FLRKHDAQ---------FTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSN 183

Query: 468 FKAKIANFSLA-----------------------AP-ATNDVMPKF----DVFAFGVVLL 499
              K+++F L                        +P A      KF    DV+++G+VL 
Sbjct: 184 LVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAY--RKFTSASDVWSYGIVLW 241

Query: 500 ELLS 503
           E++S
Sbjct: 242 EVMS 245

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 87.7 bits (218), Expect = 2e-19
 Identities = 32/183 (17%), Positives = 66/183 (36%), Gaps = 48/183 (26%)

Query: 356 AVKKIKEDVT-------EELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW 408
            +K + +          E   ++ +++H +LV   GV      N  LV E+ + GSLD +
Sbjct: 44  LLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDEN-ILVQEFVKFGSLDTY 102

Query: 409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF 468
           L               +    +L VA  +A  + ++ E+   +++H ++   NI L    
Sbjct: 103 LKKNKNC---------INILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREE 150

Query: 469 K--------AKIANFSLAAPATNDVMPKF--------------------DVFAFGVVLLE 500
                     K+++  ++       + +                     D ++FG  L E
Sbjct: 151 DRKTGNPPFIKLSDPGISITVLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWE 210

Query: 501 LLS 503
           + S
Sbjct: 211 ICS 213

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 89.1 bits (221), Expect = 3e-19
 Identities = 45/230 (19%), Positives = 80/230 (34%), Gaps = 63/230 (27%)

Query: 329 MESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK--------EDVTEELRI 370
           M S    +  + +          +V+R      G + A+K           +    E  +
Sbjct: 1   MGSQSTSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEV 60

Query: 371 LQRINHANLVKLMGV-SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQ 429
           L+++NH N+VKL  +    +  ++ L+ E+   GSL   L           +   L  S+
Sbjct: 61  LKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEP-------SNAYGLPESE 113

Query: 430 RLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL----DSRFKAKIANFSLAAPATNDV 485
            L V  DV  G+ ++ E+    IVHR+I+  NI      D +   K+ +F  A    +D 
Sbjct: 114 FLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDE 170

Query: 486 M------------------------------PKFDVFAFGVVLLELLSGK 505
                                             D+++ GV      +G 
Sbjct: 171 QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGS 220

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 87.4 bits (217), Expect = 5e-19
 Identities = 40/206 (19%), Positives = 81/206 (39%), Gaps = 49/206 (23%)

Query: 341 IGK----SVYRA--TIDGKVLAVKKI----------KEDVTEELRILQRINHANLVKLMG 384
           IG+     VYRA   +DG  +A+KK+          + D  +E+ +L+++NH N++K   
Sbjct: 40  IGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYA 99

Query: 385 VSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYM 444
            S        +V E A+ G L + +    K          +      +  + + + L++M
Sbjct: 100 -SFIEDNELNIVLELADAGDLSRMIKHFKKQK------RLIPERTVWKYFVQLCSALEHM 152

Query: 445 HEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA--PATNDVM---------------- 486
           H      ++HRDI+  N+ + +    K+ +  L     +                     
Sbjct: 153 HSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIH 209

Query: 487 -----PKFDVFAFGVVLLELLSGKKA 507
                 K D+++ G +L E+ + +  
Sbjct: 210 ENGYNFKSDIWSLGCLLYEMAALQSP 235

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 89.2 bits (221), Expect = 9e-19
 Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 52/198 (26%)

Query: 344 SVYRAT--IDGKVL--AVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQG 391
           SV +    +  K +  A+K +K+   +        E +I+ ++++  +V+L+GV      
Sbjct: 351 SVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEA- 409

Query: 392 NRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPS 451
              LV E A  G L K+L  K +          +  S    +   V+ G++Y+ E    +
Sbjct: 410 -LMLVMEMAGGGPLHKFLVGKREE---------IPVSNVAELLHQVSMGMKYLEEK---N 456

Query: 452 IVHRDIRTNNIQLDSRFKAKIANFSLAAPATND----------VMP------------KF 489
            VHR++   N+ L +R  AKI++F L+     D            P            KF
Sbjct: 457 FVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKF 516

Query: 490 ----DVFAFGVVLLELLS 503
               DV+++GV + E LS
Sbjct: 517 SSRSDVWSYGVTMWEALS 534

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 86.7 bits (215), Expect = 1e-18
 Identities = 38/224 (16%), Positives = 77/224 (34%), Gaps = 60/224 (26%)

Query: 337 EHYSIGKS--------VYRATIDGKVLAVKKIK------------------------EDV 364
             Y I ++        +     D K  A+KK +                        +D 
Sbjct: 31  NDYRIIRTLNQGKFNKIILCEKDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDF 90

Query: 365 TEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIF 424
             EL+I+  I +   +   G+ ++     +++YEY EN S+ K+         +     F
Sbjct: 91  KNELQIITDIKNEYCLTCEGIITNYD-EVYIIYEYMENDSILKFDEYFFVLDKNYTC--F 147

Query: 425 LTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND 484
           +       +   V N   Y+H     +I HRD++ +NI +D   + K+++F  +    + 
Sbjct: 148 IPIQVIKCIIKSVLNSFSYIHNEK--NICHRDVKPSNILMDKNGRVKLSDFGESEYMVDK 205

Query: 485 VM-----------------------PKFDVFAFGVVLLELLSGK 505
            +                        K D+++ G+ L  +    
Sbjct: 206 KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNV 249

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 84.1 bits (209), Expect = 4e-18
 Identities = 48/212 (22%), Positives = 84/212 (39%), Gaps = 56/212 (26%)

Query: 337 EHYSIGK--------SVYRAT--IDGKVLAVK----------KIKEDVTEELRILQRINH 376
           E + +G          VYRA     G  +A+K           + + V  E++I  ++ H
Sbjct: 11  EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKH 70

Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALD 436
            ++++L     DS    +LV E   NG ++++L  + K  S + +  F+   Q       
Sbjct: 71  PSILELYNYFEDSN-YVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMH--Q------- 120

Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM---------- 486
           +  G+ Y+H H    I+HRD+  +N+ L      KIA+F LA                  
Sbjct: 121 IITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPN 177

Query: 487 -------------PKFDVFAFGVVLLELLSGK 505
                         + DV++ G +   LL G+
Sbjct: 178 YISPEIATRSAHGLESDVWSLGCMFYTLLIGR 209

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 87.2 bits (216), Expect = 4e-18
 Identities = 41/198 (20%), Positives = 78/198 (39%), Gaps = 55/198 (27%)

Query: 345 VYRAT---IDGKVL--AVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQG 391
           V++      +   +  A+K  K   ++        E   +++ +H ++VKL+GV +++  
Sbjct: 406 VHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENP- 464

Query: 392 NRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPS 451
             +++ E    G L  +L  +  S         L  +  +  A  ++  L Y+       
Sbjct: 465 -VWIIMELCTLGELRSFLQVRKFS---------LDLASLILYAYQLSTALAYLESK---R 511

Query: 452 IVHRDIRTNNIQLDSRFKAKIANFSLA---------------------AP-ATNDVMPKF 489
            VHRDI   N+ + S    K+ +F L+                     AP + N    +F
Sbjct: 512 FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINF--RRF 569

Query: 490 ----DVFAFGVVLLELLS 503
               DV+ FGV + E+L 
Sbjct: 570 TSASDVWMFGVCMWEILM 587

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 55/210 (26%)

Query: 337 EHYSIGK--------SVYRA--TIDGKVLAVKKI-KEDVTE---------ELRILQRINH 376
           E + IG+        +VY A       +LA+K + K  + +         E+ I   + H
Sbjct: 9   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 68

Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALD 436
            N+++L G   D+    +L+ EYA  G++ + L   SK      +      ++       
Sbjct: 69  PNILRLYGYFHDAT-RVYLILEYAPLGTVYRELQKLSKFDEQRTATYI---TE------- 117

Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM---------- 486
           +AN L Y H      ++HRDI+  N+ L S  + KIA+F  +  A +             
Sbjct: 118 LANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYL 174

Query: 487 -----------PKFDVFAFGVVLLELLSGK 505
                       K D+++ GV+  E L GK
Sbjct: 175 PPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 204

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 41/226 (18%), Positives = 79/226 (34%), Gaps = 74/226 (32%)

Query: 341 IGK----SVYRAT--IDGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSD 388
           +G+     V +A   +D +  A+KKI+        +  E+ +L  +NH  +V+      +
Sbjct: 14  LGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLE 73

Query: 389 SQGNR------------FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALD 436
            +               F+  EY ENG+L   +H ++ +             +  R+   
Sbjct: 74  RRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRD---------EYWRLFRQ 124

Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM---------- 486
           +   L Y+H      I+HRD++  NI +D     KI +F LA      +           
Sbjct: 125 ILEALSYIHSQ---GIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLP 181

Query: 487 ----------------------------PKFDVFAFGVVLLELLSG 504
                                        K D+++ G++  E++  
Sbjct: 182 GSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYP 227

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 83.6 bits (207), Expect = 4e-17
 Identities = 53/222 (23%), Positives = 88/222 (39%), Gaps = 58/222 (26%)

Query: 327 VIMESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK----------EDVTE 366
            +  ST   S+ Y   +         V      I G+  AVK I           E +  
Sbjct: 16  FVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLR 75

Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLT 426
           E+++L++++H N++KL     D     +LV E    G L   +  + + S    + I   
Sbjct: 76  EVQLLKQLDHPNIMKLYEFFEDKG-YFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQ 134

Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR---FKAKIANFSLAAP-AT 482
                     V +G+ YMH++    IVHRD++  N+ L+S+      +I +F L+     
Sbjct: 135 ----------VLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEA 181

Query: 483 NDVM--------------------PKFDVFAFGVVLLELLSG 504
           +  M                     K DV++ GV+L  LLSG
Sbjct: 182 SKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSG 223

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 82.9 bits (205), Expect = 4e-17
 Identities = 38/202 (18%), Positives = 75/202 (37%), Gaps = 53/202 (26%)

Query: 342 GKSVYRATIDGKVLAVKKIK----EDVTEELRILQRIN-HANLVKLMGVSSDSQGNRFLV 396
           G  VYR   D + +AVK+I          E+++L+  + H N+++      D Q  +++ 
Sbjct: 38  GTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNVIRYFCTEKDRQ-FQYIA 96

Query: 397 YEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            E     +L +++  K  +             + + +     +GL ++H     +IVHRD
Sbjct: 97  IELCA-ATLQEYVEQKDFAHLG---------LEPITLLQQTTSGLAHLHSL---NIVHRD 143

Query: 457 IRTNNIQL-----DSRFKAKIANFSLAAPATNDVM------------------------- 486
           ++ +NI +       + KA I++F L                                  
Sbjct: 144 LKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCK 203

Query: 487 ----PKFDVFAFGVVLLELLSG 504
                  D+F+ G V   ++S 
Sbjct: 204 ENPTYTVDIFSAGCVFYYVISE 225

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 81.1 bits (201), Expect = 5e-17
 Identities = 40/212 (18%), Positives = 73/212 (34%), Gaps = 57/212 (26%)

Query: 337 EHYSIGK--------SVYRAT--IDGKVLAVK----------KIKEDVTEELRILQRINH 376
             Y  G+          +  +     +V A K            +E ++ E+ I + + H
Sbjct: 15  RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAH 74

Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALD 436
            ++V   G   D+    F+V E     SL +    +   +            Q       
Sbjct: 75  QHVVGFHGFFEDND-FVFVVLELCRRRSLLELHKRRKALTEPEARYYL---RQ------- 123

Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM---------- 486
           +  G QY+H +    ++HRD++  N+ L+   + KI +F LA     D            
Sbjct: 124 IVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPN 180

Query: 487 -------------PKFDVFAFGVVLLELLSGK 505
                         + DV++ G ++  LL GK
Sbjct: 181 YIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGK 212

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 83.2 bits (206), Expect = 5e-17
 Identities = 55/222 (24%), Positives = 90/222 (40%), Gaps = 57/222 (25%)

Query: 327 VIMESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK---------EDVTEE 367
            I     +LSE Y   K         V      +     A+K I+           + EE
Sbjct: 27  FITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEE 86

Query: 368 LRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTW 427
           + +L+ ++H N++KL     D + N +LV E  + G L   +  + K +    +VI    
Sbjct: 87  VAVLKLLDHPNIMKLYDFFEDKR-NYYLVMECYKGGELFDEIIHRMKFNEVDAAVIIKQ- 144

Query: 428 SQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR---FKAKIANFSLAAP-ATN 483
                    V +G+ Y+H+H   +IVHRD++  N+ L+S+      KI +F L+A     
Sbjct: 145 ---------VLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQ 192

Query: 484 DVM--------------------PKFDVFAFGVVLLELLSGK 505
             M                     K DV++ GV+L  LL+G 
Sbjct: 193 KKMKERLGTAYYIAPEVLRKKYDEKCDVWSIGVILFILLAGY 234

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 83.6 bits (206), Expect = 6e-17
 Identities = 42/216 (19%), Positives = 78/216 (36%), Gaps = 58/216 (26%)

Query: 338 HYSIGK--------SVYRAT--IDGKVLAVKKIK--------EDVTEELRILQRINHANL 379
            + + +         V R      G+ +A+K+ +        E    E++I++++NH N+
Sbjct: 15  PWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNV 74

Query: 380 VKLMGV-----SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVA 434
           V    V              L  EY E G L K+L+          +   L       + 
Sbjct: 75  VSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQF-------ENCCGLKEGPIRTLL 127

Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA---KIANFSLAAPATNDVM----- 486
            D+++ L+Y+HE+    I+HRD++  NI L    +    KI +   A       +     
Sbjct: 128 SDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFV 184

Query: 487 -----------------PKFDVFAFGVVLLELLSGK 505
                               D ++FG +  E ++G 
Sbjct: 185 GTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGF 220

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 81.2 bits (201), Expect = 7e-17
 Identities = 40/212 (18%), Positives = 73/212 (34%), Gaps = 57/212 (26%)

Query: 337 EHYSIGK--------SVYRAT--IDGKVLAVK----------KIKEDVTEELRILQRINH 376
             Y  G+          +  +     +V A K            +E ++ E+ I + + H
Sbjct: 41  RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAH 100

Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALD 436
            ++V   G   D+    F+V E     SL +    +   +            Q       
Sbjct: 101 QHVVGFHGFFEDND-FVFVVLELCRRRSLLELHKRRKALTEPEARYYLR---Q------- 149

Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM---------- 486
           +  G QY+H +    ++HRD++  N+ L+   + KI +F LA     D            
Sbjct: 150 IVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPN 206

Query: 487 -------------PKFDVFAFGVVLLELLSGK 505
                         + DV++ G ++  LL GK
Sbjct: 207 YIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGK 238

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 80.4 bits (199), Expect = 9e-17
 Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 50/198 (25%)

Query: 344 SVYRA--TIDGKVLAVKKIKEDVTEELRILQR----------INHANLVKLMGVSSDSQG 391
           +VY A  TI    +A+K I     E+   L+R          ++H N+V ++ V  +   
Sbjct: 26  TVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEE-DD 84

Query: 392 NRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPS 451
             +LV EY E  +L +++               L+    +     + +G+++ H+     
Sbjct: 85  CYYLVMEYIEGPTLSEYIESHGP----------LSVDTAINFTNQILDGIKHAHDM---R 131

Query: 452 IVHRDIRTNNIQLDSRFKAKIANFSLAAPA-------TNDVM-----------------P 487
           IVHRDI+  NI +DS    KI +F +A          TN V+                  
Sbjct: 132 IVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDE 191

Query: 488 KFDVFAFGVVLLELLSGK 505
             D+++ G+VL E+L G+
Sbjct: 192 CTDIYSIGIVLYEMLVGE 209

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 80.1 bits (198), Expect = 1e-16
 Identities = 40/223 (17%), Positives = 73/223 (32%), Gaps = 59/223 (26%)

Query: 341 IGK----SVYRAT--IDGKVLAVKKIK---------EDVTEELRILQRI-NHANLVKLMG 384
           +G      V++     DG++ AVK+                E+   +++  H   V+L  
Sbjct: 65  LGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQ 124

Query: 385 VSSDSQGNR-FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQY 443
             +  +G   +L  E     SL +                 L  +Q      D    L +
Sbjct: 125 --AWEEGGILYLQTELCG-PSLQQHCEAWGA---------SLPEAQVWGYLRDTLLALAH 172

Query: 444 MHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM----------------- 486
           +H      +VH D++  NI L  R + K+ +F L                          
Sbjct: 173 LHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQ 229

Query: 487 ----PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIRE 525
                  DVF+ G+ +LE+    +     E       W+++R+
Sbjct: 230 GSYGTAADVFSLGLTILEVACNMELPHGGEG------WQQLRQ 266

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 79.2 bits (196), Expect = 2e-16
 Identities = 42/219 (19%), Positives = 81/219 (36%), Gaps = 54/219 (24%)

Query: 329 MESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKI--------KEDVTEELRI 370
           +     + + +   +         V+       G    +K I         E +  E+ +
Sbjct: 14  LYFQGTIDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEV 73

Query: 371 LQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSL-DKWLHPKSKSSSSSGSVIFLTWSQ 429
           L+ ++H N++K+  V  D   N ++V E  E G L ++ +  +++  +       L+   
Sbjct: 74  LKSLDHPNIIKIFEVFEDYH-NMYIVMETCEGGELLERIVSAQARGKA-------LSEGY 125

Query: 430 RLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA---KIANFSLAAPATNDVM 486
              +   + N L Y H      +VH+D++  NI           KI +F LA    +D  
Sbjct: 126 VAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEH 182

Query: 487 ---------------------PKFDVFAFGVVLLELLSG 504
                                 K D+++ GVV+  LL+G
Sbjct: 183 STNAAGTALYMAPEVFKRDVTFKCDIWSAGVVMYFLLTG 221

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 79.2 bits (196), Expect = 2e-16
 Identities = 44/214 (20%), Positives = 83/214 (38%), Gaps = 55/214 (25%)

Query: 332 TMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK-------EDVTEELRILQRI 374
           T N+ + +   +         V+     + GK+ A+K IK         +  E+ +L++I
Sbjct: 4   TTNIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKI 63

Query: 375 NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVA 434
            H N+V L  +  +S  + +LV +    G L   +  +   +    S++           
Sbjct: 64  KHENIVTLEDI-YESTTHYYLVMQLVSGGELFDRILERGVYTEKDASLVIQQ-------- 114

Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF---KAKIANFSLAAPATNDVM----- 486
             V + ++Y+HE+    IVHRD++  N+   +     K  I +F L+    N +M     
Sbjct: 115 --VLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACG 169

Query: 487 ----------------PKFDVFAFGVVLLELLSG 504
                              D ++ GV+   LL G
Sbjct: 170 TPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCG 203

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 78.8 bits (195), Expect = 2e-16
 Identities = 53/219 (24%), Positives = 89/219 (40%), Gaps = 57/219 (26%)

Query: 329 MESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK---------EDVTEELR 369
           +      +E Y+I           V +    I  +  AVK I            +  E+ 
Sbjct: 14  LYFQGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVE 73

Query: 370 ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQ 429
           +L++++H N++KL  +  DS  + ++V E    G L   +  + + S    + I      
Sbjct: 74  LLKKLDHPNIMKLFEILEDSS-SFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQ--- 129

Query: 430 RLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA---KIANFSLAAPATNDVM 486
                  V +G+ YMH+H   +IVHRD++  NI L+S+ K    KI +F L+     +  
Sbjct: 130 -------VFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTK 179

Query: 487 ---------------------PKFDVFAFGVVLLELLSG 504
                                 K DV++ GV+L  LLSG
Sbjct: 180 MKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSG 218

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 78.5 bits (194), Expect = 3e-16
 Identities = 45/241 (18%), Positives = 88/241 (36%), Gaps = 73/241 (30%)

Query: 341 IGK----SVYRA--TIDGKVLAVKKIK---------EDVTEELRILQRI-NHANLVKLMG 384
           IG     SV++    +DG + A+K+ K         ++   E+     +  H+++V+   
Sbjct: 19  IGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFS 78

Query: 385 VSSDSQGNRFLVY-EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQY 443
             + ++ +  L+  EY   GSL   +    +  S      +   ++   + L V  GL+Y
Sbjct: 79  --AWAEDDHMLIQNEYCNGGSLADAISENYRIMS------YFKEAELKDLLLQVGRGLRY 130

Query: 444 MHEHAQPSIVHRDIRTNNIQLD-------------------SRFKAKIANFSLAAPATN- 483
           +H     S+VH DI+ +NI +                    ++   KI +       ++ 
Sbjct: 131 IHSM---SLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSP 187

Query: 484 -----DVM--------------PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIR 524
                D                PK D+FA  + ++     +   R  +       W EIR
Sbjct: 188 QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGD------QWHEIR 241

Query: 525 E 525
           +
Sbjct: 242 Q 242

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 78.4 bits (194), Expect = 3e-16
 Identities = 44/210 (20%), Positives = 81/210 (38%), Gaps = 55/210 (26%)

Query: 337 EHYSIGK--------SVYRA--TIDGKVLAVKKI------KEDVTE----ELRILQRINH 376
           + + IG+        +VY A    +  ++A+K +      KE V      E+ I   + H
Sbjct: 14  DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRH 73

Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALD 436
            N++++     D +   +L+ E+A  G L K L    +      +       +       
Sbjct: 74  PNILRMYNYFHDRK-RIYLMLEFAPRGELYKELQKHGRFDEQRSATFM---EE------- 122

Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM---------- 486
           +A+ L Y HE     ++HRDI+  N+ +  + + KIA+F  +  A +             
Sbjct: 123 LADALHYCHER---KVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRTMCGTLDYL 179

Query: 487 -----------PKFDVFAFGVVLLELLSGK 505
                       K D++  GV+  E L G 
Sbjct: 180 PPEMIEGKTHDEKVDLWCAGVLCYEFLVGM 209

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 78.0 bits (193), Expect = 4e-16
 Identities = 41/215 (19%), Positives = 80/215 (37%), Gaps = 55/215 (25%)

Query: 331 STMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKI-------KEDVTEELRILQR 373
           +  +++++Y++           V  A         A KKI        +   +E+ I++ 
Sbjct: 3   TKGDINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKS 62

Query: 374 INHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRV 433
           ++H N+++L     D+  + +LV E    G L + +  K     S  + I          
Sbjct: 63  LDHPNIIRLYETFEDNT-DIYLVMELCTGGELFERVVHKRVFRESDAARIMKD------- 114

Query: 434 ALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA---KIANFSLAAPATNDVM---- 486
              V + + Y H+    ++ HRD++  N    +       K+ +F LAA      M    
Sbjct: 115 ---VLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTK 168

Query: 487 -----------------PKFDVFAFGVVLLELLSG 504
                            P+ D ++ GV++  LL G
Sbjct: 169 VGTPYYVSPQVLEGLYGPECDEWSAGVMMYVLLCG 203

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 78.1 bits (193), Expect = 4e-16
 Identities = 45/205 (21%), Positives = 83/205 (40%), Gaps = 52/205 (25%)

Query: 341 IGK----SVYRA--TIDGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSS 387
           +GK     VY      +   +A+K+I        + + EE+ + + + H N+V+ +G  S
Sbjct: 30  LGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLG--S 87

Query: 388 DSQGNRFLVY-EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE 446
            S+     ++ E    GSL   L  K      +   I     Q L        GL+Y+H+
Sbjct: 88  FSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILE-------GLKYLHD 140

Query: 447 HAQPSIVHRDIRTNNIQLDSRF-KAKIANFSLA--------------------AP----- 480
           +    IVHRDI+ +N+ +++     KI++F  +                    AP     
Sbjct: 141 N---QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDK 197

Query: 481 ATNDVMPKFDVFAFGVVLLELLSGK 505
                    D+++ G  ++E+ +GK
Sbjct: 198 GPRGYGKAADIWSLGCTIIEMATGK 222

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 80.3 bits (198), Expect = 5e-16
 Identities = 55/286 (19%), Positives = 101/286 (35%), Gaps = 67/286 (23%)

Query: 272 RVRILNRNGSS--LESADLIPMKENSKSDRFEPKLAQNKLLPGVSG---------YLGKP 320
           R+   N++G S   E    + +  + +  R    + +   +    G              
Sbjct: 81  RIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGTVSSNYDNYVFDIW 140

Query: 321 IVYEIEVIMESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKI-------KED 363
             Y  + +     ++ +HY I +         V+R T    G   A K +       KE 
Sbjct: 141 KQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKET 200

Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSL-DKWLHPKSKSSSSSGSV 422
           V +E++ +  + H  LV L     +      ++YE+   G L +K     +K        
Sbjct: 201 VRKEIQTMSVLRHPTLVNLHDA-FEDDNEMVMIYEFMSGGELFEKVADEHNK-------- 251

Query: 423 IFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA--KIANFSLA-- 478
             ++  + +     V  GL +MHE+   + VH D++  NI   ++     K+ +F L   
Sbjct: 252 --MSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAH 306

Query: 479 -----------------AP---ATNDVMPKFDVFAFGVVLLELLSG 504
                            AP       V    D+++ GV+   LLSG
Sbjct: 307 LDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSG 352

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 79.1 bits (195), Expect = 6e-16
 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 33/155 (21%)

Query: 345 VYRA----TIDGKVLAVKKIKEDVTE-----ELRILQRINHANLVKLMGVSSDSQGNR-F 394
           VY+A      D K  A+K+I+          E+ +L+ + H N++ L  V       + +
Sbjct: 37  VYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVW 96

Query: 395 LVYEYAENGSLDKWLHPKSKSSSSSGSVIF-------LTWSQRLRVALDVANGLQYMHEH 447
           L+++YAE+  L   +     S ++   V         L + Q L       +G+ Y+H +
Sbjct: 97  LLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLY-QIL-------DGIHYLHAN 147

Query: 448 AQPSIVHRDIRTNNI----QLDSRFKAKIANFSLA 478
               ++HRD++  NI    +   R + KIA+   A
Sbjct: 148 ---WVLHRDLKPANILVMGEGPERGRVKIADMGFA 179

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 79.1 bits (195), Expect = 7e-16
 Identities = 39/242 (16%), Positives = 84/242 (34%), Gaps = 69/242 (28%)

Query: 324 EIEVIMESTMNLSEHYSIGKS---------VYRATIDGKVLAVKKIK----EDVTEELRI 370
            I  I     +L       K          V++ +  G+ +AVK++     +    E+++
Sbjct: 2   RIANIPNFEQSLKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKL 61

Query: 371 LQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQ 429
           L    +H N+++     +  +   ++  E     +L   +  K+ S  +           
Sbjct: 62  LTESDDHPNVIRYYCSETTDR-FLYIALELCN-LNLQDLVESKNVSDENLKL---QKEYN 116

Query: 430 RLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS-------------RFKAKIANFS 476
            + +   +A+G+ ++H      I+HRD++  NI + +               +  I++F 
Sbjct: 117 PISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFG 173

Query: 477 LA------------------------AP----ATNDVMPKF------DVFAFGVVLLELL 502
           L                         AP     +N++  K       D+F+ G V   +L
Sbjct: 174 LCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYIL 233

Query: 503 SG 504
           S 
Sbjct: 234 SK 235

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 78.0 bits (193), Expect = 7e-16
 Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 53/202 (26%)

Query: 345 VYRAT---IDGKVLAVKKIKEDVTEE------------LRILQRINHANLVKL----MGV 385
           V++A      G+ +A+K+++    EE            LR L+   H N+V+L       
Sbjct: 27  VFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS 86

Query: 386 SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMH 445
            +D +    LV+E+ +   L  +L    +    + ++  + + Q LR       GL ++H
Sbjct: 87  RTDRETKLTLVFEHVDQ-DLTTYLDKVPEPGVPTETIKDMMF-QLLR-------GLDFLH 137

Query: 446 EHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------APATNDVM------------- 486
            H    +VHRD++  NI + S  + K+A+F LA         T+ V+             
Sbjct: 138 SH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQS 194

Query: 487 ---PKFDVFAFGVVLLELLSGK 505
                 D+++ G +  E+   K
Sbjct: 195 SYATPVDLWSVGCIFAEMFRRK 216

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 77.6 bits (192), Expect = 8e-16
 Identities = 45/204 (22%), Positives = 76/204 (37%), Gaps = 55/204 (26%)

Query: 345 VYRA--TIDGKVLAVKKIKEDVTEE---------------LRILQRINHANLVKL----M 383
           VY+A     G  +A+K ++                     LR L+   H N+V+L     
Sbjct: 25  VYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCA 84

Query: 384 GVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQY 443
              +D +    LV+E+ +   L  +L         + ++  L   Q LR       GL +
Sbjct: 85  TSRTDREIKVTLVFEHVDQ-DLRTYLDKAPPPGLPAETIKDLMR-QFLR-------GLDF 135

Query: 444 MHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------APATNDVM----------- 486
           +H +    IVHRD++  NI + S    K+A+F LA         T  V+           
Sbjct: 136 LHAN---CIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLL 192

Query: 487 -----PKFDVFAFGVVLLELLSGK 505
                   D+++ G +  E+   K
Sbjct: 193 QSTYATPVDMWSVGCIFAEMFRRK 216

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 78.0 bits (193), Expect = 1e-15
 Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 32/150 (21%)

Query: 345 VYRA--TIDGKVLAVKKIKEDVTEE---------LR---ILQRINHANLVKLMGVSSDSQ 390
           VY+A      +++A+KKIK     E         LR   +LQ ++H N++ L+      +
Sbjct: 26  VYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFG-HK 84

Query: 391 GNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVI--FLTWSQRLRVALDVANGLQYMHEHA 448
            N  LV+++ E   L+  +  K  S   + S I  ++     L+       GL+Y+H+H 
Sbjct: 85  SNISLVFDFMET-DLEVII--KDNSLVLTPSHIKAYM--LMTLQ-------GLEYLHQH- 131

Query: 449 QPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
              I+HRD++ NN+ LD     K+A+F LA
Sbjct: 132 --WILHRDLKPNNLLLDENGVLKLADFGLA 159

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 76.8 bits (190), Expect = 1e-15
 Identities = 40/145 (27%), Positives = 75/145 (51%), Gaps = 24/145 (16%)

Query: 345 VYRA--TIDGKVLAVKKIKEDVTEE------LR---ILQRINHANLVKLMGVSSDSQGNR 393
           VY+A   + G+V+A+KKI+ D   E      +R   +L+ +NH N+VKL+ V   ++   
Sbjct: 19  VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIH-TENKL 77

Query: 394 FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIV 453
           +LV+E+     L K++   + +      +    + Q L+       GL + H H    ++
Sbjct: 78  YLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLF-QLLQ-------GLAFCHSH---RVL 125

Query: 454 HRDIRTNNIQLDSRFKAKIANFSLA 478
           HRD++  N+ +++    K+A+F LA
Sbjct: 126 HRDLKPQNLLINTEGAIKLADFGLA 150

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 77.2 bits (191), Expect = 1e-15
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 25/147 (17%)

Query: 345 VYRA--TIDGKVLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNRF 394
           VY+      G  +A+K++K D  E        E+ +++ + H N+V+L  V   ++    
Sbjct: 21  VYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIH-TENKLT 79

Query: 395 LVYEYAEN---GSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPS 451
           LV+E+ +N     +D      +        V +  W Q L+       GL + HE+    
Sbjct: 80  LVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQW-QLLQ-------GLAFCHEN---K 128

Query: 452 IVHRDIRTNNIQLDSRFKAKIANFSLA 478
           I+HRD++  N+ ++ R + K+ +F LA
Sbjct: 129 ILHRDLKPQNLLINKRGQLKLGDFGLA 155

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 77.8 bits (191), Expect = 2e-15
 Identities = 18/220 (8%), Positives = 43/220 (19%), Gaps = 66/220 (30%)

Query: 345 VYRAT--IDGKVLAVKKIK----------EDVTEELRILQRINHANLVKLM--------- 383
           V+        +  A+K             E + E      R+   +  +           
Sbjct: 78  VFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPS 137

Query: 384 ----------------GVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTW 427
                           G    +  N  L+   A    L+             G       
Sbjct: 138 DAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGD---EGI 193

Query: 428 SQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA------ 481
                +   +      +       +VH     +N+ +    +  + + S           
Sbjct: 194 LALHILTAQLIRLAANLQSK---GLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGPA 250

Query: 482 ---TNDVMP-------------KFDVFAFGVVLLELLSGK 505
                   P               + +  G+ +  +    
Sbjct: 251 SSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLF 290

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 77.4 bits (191), Expect = 2e-15
 Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 58/231 (25%)

Query: 318 GKPIVYEIEVIMESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK------ 361
           G+ +    E +M ++   S++Y + +         V R      G   A K I       
Sbjct: 10  GQQMGRGSEFMMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSA 69

Query: 362 ---EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSS 418
              + +  E RI +++ H N+V+L     +     +LV++    G L + +  +   S +
Sbjct: 70  RDFQKLEREARICRKLQHPNIVRLHDSIQEE-SFHYLVFDLVTGGELFEDIVAREFYSEA 128

Query: 419 SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA---KIANF 475
             S               +   + Y H +    IVHR+++  N+ L S+ K    K+A+F
Sbjct: 129 DASHCIQQ----------ILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADF 175

Query: 476 SLA-------------------AP---ATNDVMPKFDVFAFGVVLLELLSG 504
            LA                   +P     +      D++A GV+L  LL G
Sbjct: 176 GLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVG 226

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 77.4 bits (191), Expect = 2e-15
 Identities = 58/294 (19%), Positives = 110/294 (37%), Gaps = 67/294 (22%)

Query: 264 YNHHLQRKRVRILNRNGSSLESADLIP-------MKENSKSDRFEPKLAQNKLLPGVSGY 316
           ++HH     +   N    S++++            KE   +     ++            
Sbjct: 5   HHHHSSGVDLGTENLYFQSMKNSGDQDSRSGHNEAKEVWSNADLTERMPVKSKRTSALAV 64

Query: 317 --LGKPIVYEIEVIMESTMNLSEHYSIGKS----------VYRAT--IDGKVLAVKKI-- 360
                P  ++  ++      ++  Y++ K+          V++      G  LA K I  
Sbjct: 65  DIPAPPAPFDHRIVTAKQGAVNSFYTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKT 124

Query: 361 -----KEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSL-DKWLHPKSK 414
                KE+V  E+ ++ +++HANL++L     +S+ +  LV EY + G L D+ +     
Sbjct: 125 RGMKDKEEVKNEISVMNQLDHANLIQLYDA-FESKNDIVLVMEYVDGGELFDRIIDESYN 183

Query: 415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA--KI 472
                     LT    +     +  G+++MH+     I+H D++  NI   +R     KI
Sbjct: 184 ----------LTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKI 230

Query: 473 ANFSLA-------------------AP---ATNDVMPKFDVFAFGVVLLELLSG 504
            +F LA                   AP     + V    D+++ GV+   LLSG
Sbjct: 231 IDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSG 284

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 68/232 (29%)

Query: 327 VIMESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK--------------- 361
            + +    + E Y   +         V            A+K IK               
Sbjct: 26  YVRKKEGKIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKN 85

Query: 362 -----EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSS 416
                E++  E+ +L+ ++H N++KL  V  D +   +LV E+ E G L + +  + K  
Sbjct: 86  IEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKK-YFYLVTEFYEGGELFEQIINRHKFD 144

Query: 417 SSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR---FKAKIA 473
               + I             + +G+ Y+H+H   +IVHRDI+  NI L+++      KI 
Sbjct: 145 ECDAANIMKQ----------ILSGICYLHKH---NIVHRDIKPENILLENKNSLLNIKIV 191

Query: 474 NFSLAAP-ATNDVM--------------------PKFDVFAFGVVLLELLSG 504
           +F L++  + +  +                     K DV++ GV++  LL G
Sbjct: 192 DFGLSSFFSKDYKLRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYILLCG 243

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 54/219 (24%), Positives = 89/219 (40%), Gaps = 57/219 (26%)

Query: 329 MESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK---------EDVTEELR 369
           +      +E Y+I           V +    I  +  AVK I            +  E+ 
Sbjct: 14  LYFQGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVE 73

Query: 370 ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQ 429
           +L++++H N++KL  +  DS  + ++V E    G L   +  + + S    + I      
Sbjct: 74  LLKKLDHPNIMKLFEILEDSS-SFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQ--- 129

Query: 430 RLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR---FKAKIANFSLAAP-ATNDV 485
                  V +G+ YMH+H   +IVHRD++  NI L+S+      KI +F L+     N  
Sbjct: 130 -------VFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTK 179

Query: 486 M--------------------PKFDVFAFGVVLLELLSG 504
           M                     K DV++ GV+L  LLSG
Sbjct: 180 MKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSG 218

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 75.7 bits (187), Expect = 3e-15
 Identities = 45/217 (20%), Positives = 80/217 (36%), Gaps = 58/217 (26%)

Query: 332 TMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK---------EDVTEELRILQ 372
           +   S++Y + +         V R      G   A K I          + +  E RI +
Sbjct: 1   STKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICR 60

Query: 373 RINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLR 432
           ++ H N+V+L     +     +LV++    G L + +  +   S +  S           
Sbjct: 61  KLQHPNIVRLHDSIQEE-SFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQ------ 113

Query: 433 VALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA---KIANFSLA----------- 478
               +   + Y H +    IVHR+++  N+ L S+ K    K+A+F LA           
Sbjct: 114 ----ILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHG 166

Query: 479 --------AP---ATNDVMPKFDVFAFGVVLLELLSG 504
                   +P     +      D++A GV+L  LL G
Sbjct: 167 FAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVG 203

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 77.1 bits (190), Expect = 3e-15
 Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 54/223 (24%)

Query: 323 YEIEVIMESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKI-------KEDVT 365
           Y  + +     ++ ++Y I +         V+R      G+V   K I       K  V 
Sbjct: 37  YVPQPVEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVK 96

Query: 366 EELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFL 425
            E+ I+ +++H  L+ L     + +    L+ E+   G L   +  +            +
Sbjct: 97  NEISIMNQLHHPKLINLHDA-FEDKYEMVLILEFLSGGELFDRIAAEDYK---------M 146

Query: 426 TWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA--KIANFSLA----- 478
           + ++ +        GL++MHEH   SIVH DI+  NI  +++  +  KI +F LA     
Sbjct: 147 SEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNP 203

Query: 479 --------------AP---ATNDVMPKFDVFAFGVVLLELLSG 504
                         AP       V    D++A GV+   LLSG
Sbjct: 204 DEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSG 246

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 75.6 bits (187), Expect = 3e-15
 Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 25/145 (17%)

Query: 345 VYRA--TIDGKVLAVKKIKEDVTEE------LR---ILQRINHANLVKLMGVSSDSQGNR 393
           V++A      +++A+K+++ D  +E      LR   +L+ + H N+V+L  V   S    
Sbjct: 18  VFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLH-SDKKL 76

Query: 394 FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIV 453
            LV+E+ +   L K+    +          FL   Q L+       GL + H     +++
Sbjct: 77  TLVFEFCDQ-DLKKYFDSCNGDLDPEIVKSFL--FQLLK-------GLGFCHSR---NVL 123

Query: 454 HRDIRTNNIQLDSRFKAKIANFSLA 478
           HRD++  N+ ++   + K+ANF LA
Sbjct: 124 HRDLKPQNLLINRNGELKLANFGLA 148

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 75.7 bits (187), Expect = 3e-15
 Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 53/198 (26%)

Query: 345 VYRA--TIDGKVLAVKKIKEDVTE---------ELRILQRINHANLVKLMGVSSDSQGNR 393
           V++      G+++A+KK  E   +         E+R+L+++ H NLV L+ V    +   
Sbjct: 19  VFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFR-RKRRL 77

Query: 394 FLVYEYAENGSLDKWL--HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPS 451
            LV+EY ++ ++   L  + +        S+ +    Q L+        + + H+H   +
Sbjct: 78  HLVFEYCDH-TVLHELDRYQRGVPEHLVKSITW----QTLQ-------AVNFCHKH---N 122

Query: 452 IVHRDIRTNNIQLDSRFKAKIANFSLA-------APATNDVM-----------------P 487
            +HRD++  NI +      K+ +F  A           ++V                  P
Sbjct: 123 CIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGP 182

Query: 488 KFDVFAFGVVLLELLSGK 505
             DV+A G V  ELLSG 
Sbjct: 183 PVDVWAIGCVFAELLSGV 200

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 45/221 (20%), Positives = 83/221 (37%), Gaps = 55/221 (24%)

Query: 325 IEVIMESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKI---KEDVTEELRIL 371
           ++ +  +++  ++ Y + +           R          AVK I   K D TEE+ IL
Sbjct: 10  VQQLHRNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEIL 69

Query: 372 QR-INHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQR 430
            R   H N++ L  V  D +   ++V E  + G L   +  +   S    S +  T    
Sbjct: 70  LRYGQHPNIITLKDVYDDGK-YVYVVTELMKGGELLDKILRQKFFSEREASAVLFT---- 124

Query: 431 LRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA----KIANFSLAA--PATND 484
                 +   ++Y+H      +VHRD++ +NI            +I +F  A    A N 
Sbjct: 125 ------ITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENG 175

Query: 485 VM---------------------PKFDVFAFGVVLLELLSG 504
           ++                        D+++ GV+L  +L+G
Sbjct: 176 LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTG 216

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 42/219 (19%), Positives = 80/219 (36%), Gaps = 59/219 (26%)

Query: 331 STMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK---------EDVTEELRIL 371
           +    +E Y + +         V R    + G+  A   I          + +  E RI 
Sbjct: 5   TCTRFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARIC 64

Query: 372 QRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRL 431
           + + H N+V+L    S+ +G+ +L+++    G L + +  +   S +  S          
Sbjct: 65  RLLKHPNIVRLHDSISE-EGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQ----- 118

Query: 432 RVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA---KIANFSLAA--PATNDVM 486
                +   + + H+     +VHR+++  N+ L S+ K    K+A+F LA          
Sbjct: 119 -----ILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAW 170

Query: 487 ---------------------PKFDVFAFGVVLLELLSG 504
                                   D++A GV+L  LL G
Sbjct: 171 FGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVG 209

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 75.6 bits (186), Expect = 5e-15
 Identities = 33/198 (16%), Positives = 75/198 (37%), Gaps = 36/198 (18%)

Query: 336 SEHYSIGK--------SVYRAT--IDGKVLAVKKI-------KEDVTEELRILQRI-NHA 377
                + +         VY A     G+  A+K++          + +E+  ++++  H 
Sbjct: 27  ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHP 86

Query: 378 NLVKLMGVS----SDSQGNRFLVY---EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQR 430
           N+V+    +     +S   +       E  +   ++     +S+          L+    
Sbjct: 87  NIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGP--------LSCDTV 138

Query: 431 LRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFD 490
           L++       +Q+MH   +P I+HRD++  N+ L ++   K+ +F  A   ++   P + 
Sbjct: 139 LKIFYQTCRAVQHMHRQ-KPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHY--PDYS 195

Query: 491 VFAFGVVLLELLSGKKAT 508
             A    L+E    +  T
Sbjct: 196 WSAQRRALVEEEITRNTT 213

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 76.3 bits (188), Expect = 5e-15
 Identities = 45/224 (20%), Positives = 80/224 (35%), Gaps = 68/224 (30%)

Query: 334 NLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK---------------EDVTEEL 368
            L + Y + K         V  A      K +A++ I                 +V  E+
Sbjct: 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEI 191

Query: 369 RILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWS 428
            IL+++NH  ++K+         + ++V E  E G L   +    +   ++  + F    
Sbjct: 192 EILKKLNHPCIIKIKNFFDAE--DYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQ-- 247

Query: 429 QRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR---FKAKIANFSLA------- 478
                   +   +QY+HE+    I+HRD++  N+ L S+      KI +F  +       
Sbjct: 248 --------MLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETS 296

Query: 479 ------------AP------ATNDVMPKFDVFAFGVVLLELLSG 504
                       AP       T       D ++ GV+L   LSG
Sbjct: 297 LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSG 340

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 74.9 bits (185), Expect = 7e-15
 Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 24/144 (16%)

Query: 345 VYRAT--IDGKVLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNRF 394
           VY+    +   ++A+K+I+ +  E        E+ +L+ + HAN+V L  +   ++ +  
Sbjct: 18  VYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIH-TEKSLT 76

Query: 395 LVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
           LV+EY +   L ++L       +     +FL   Q LR       GL Y H      ++H
Sbjct: 77  LVFEYLDK-DLKQYLDDCGNIINMHNVKLFL--FQLLR-------GLAYCHRQ---KVLH 123

Query: 455 RDIRTNNIQLDSRFKAKIANFSLA 478
           RD++  N+ ++ R + K+A+F LA
Sbjct: 124 RDLKPQNLLINERGELKLADFGLA 147

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 75.1 bits (185), Expect = 7e-15
 Identities = 52/230 (22%), Positives = 87/230 (37%), Gaps = 63/230 (27%)

Query: 324 EIEVIMESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVK-----KIKED----- 363
           E+E +       S+ YS            V+ A      K + VK     K+ ED     
Sbjct: 11  ELEGLAACEGEYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIED 70

Query: 364 -----VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGS-LDKWLHPKSKSSS 417
                VT E+ IL R+ HAN++K++ +  ++QG   LV E   +G  L  ++    +   
Sbjct: 71  PKLGKVTLEIAILSRVEHANIIKVLDIF-ENQGFFQLVMEKHGSGLDLFAFIDRHPRLDE 129

Query: 418 SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSL 477
              S IF    Q       + + + Y+       I+HRDI+  NI +   F  K+ +F  
Sbjct: 130 PLASYIF---RQ-------LVSAVGYLRLK---DIIHRDIKDENIVIAEDFTIKLIDFGS 176

Query: 478 AAPATNDVM-----------------------PKFDVFAFGVVLLELLSG 504
           AA      +                       P+ ++++ GV L  L+  
Sbjct: 177 AAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFE 226

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 75.3 bits (185), Expect = 7e-15
 Identities = 45/265 (16%), Positives = 79/265 (29%), Gaps = 87/265 (32%)

Query: 324 EIEVIMESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK------------ 361
            +     S + L + Y +           V  A       + A+K +             
Sbjct: 13  NLYFQGGSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDV 72

Query: 362 EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGS 421
           E +  E+R++++++H N+ +L  V  D Q    LV E    G L   L+     S+   +
Sbjct: 73  ERIKTEVRLMKKLHHPNIARLYEVYEDEQ-YICLVMELCHGGHLLDKLNVFIDDSTGKCA 131

Query: 422 VIFLTWSQRL------------------------------RVALDVANGLQYMHEHAQPS 451
           +  +                                     +   + + L Y+H      
Sbjct: 132 MDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQ---G 188

Query: 452 IVHRDIRTNNIQLDSRFKA--KIANFSLAA------PATNDVM----------------- 486
           I HRDI+  N    +      K+ +F L+             M                 
Sbjct: 189 ICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNT 248

Query: 487 ------PKFDVFAFGVVLLELLSGK 505
                 PK D ++ GV+L  LL G 
Sbjct: 249 TNESYGPKCDAWSAGVLLHLLLMGA 273

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 74.6 bits (184), Expect = 8e-15
 Identities = 44/212 (20%), Positives = 72/212 (33%), Gaps = 55/212 (25%)

Query: 334 NLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK------EDVTEELRILQRINHA 377
            L E Y I +         V+R       K    K +K        V +E+ IL    H 
Sbjct: 2   ELYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHR 61

Query: 378 NLVKLMGVSSDSQGNRFLVYEYAENGSL-DKWLHPKSKSSSSSGSVIFLTWSQRLRVALD 436
           N++ L     +S     +++E+     + ++      + +                    
Sbjct: 62  NILHLHES-FESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQ---------- 110

Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA--KIANFSLA---------------- 478
           V   LQ++H H   +I H DIR  NI   +R  +  KI  F  A                
Sbjct: 111 VCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAP 167

Query: 479 ---AP---ATNDVMPKFDVFAFGVVLLELLSG 504
              AP     + V    D+++ G ++  LLSG
Sbjct: 168 EYYAPEVHQHDVVSTATDMWSLGTLVYVLLSG 199

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 75.0 bits (185), Expect = 8e-15
 Identities = 49/210 (23%), Positives = 88/210 (41%), Gaps = 65/210 (30%)

Query: 345 VYRA--TIDGKVLAVKKIKEDVTEE------LR---ILQRINHANLVKLMGV-------S 386
           V++A     G+ +A+KK+  +  +E      LR   ILQ + H N+V L+ +        
Sbjct: 33  VFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPY 92

Query: 387 SDSQGNRFLVYEYAEN---GSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQY 443
           +  +G+ +LV+++ E+   G L    +   K           T S+  RV   + NGL Y
Sbjct: 93  NRCKGSIYLVFDFCEHDLAGLLS---NVLVK----------FTLSEIKRVMQMLLNGLYY 139

Query: 444 MHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA-----------APATNDVM------ 486
           +H +    I+HRD++  N+ +      K+A+F LA              TN V+      
Sbjct: 140 IHRN---KILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRP 196

Query: 487 -----------PKFDVFAFGVVLLELLSGK 505
                      P  D++  G ++ E+ +  
Sbjct: 197 PELLLGERDYGPPIDLWGAGCIMAEMWTRS 226

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 74.6 bits (184), Expect = 1e-14
 Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 53/198 (26%)

Query: 345 VYRA--TIDGKVLAVKKIKEDVTE---------ELRILQRINHANLVKLMGVSSDSQGNR 393
           V +      G+++A+KK  E   +         E+++L+++ H NLV L+ V    +   
Sbjct: 41  VMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCK-KKKRW 99

Query: 394 FLVYEYAENGSLDKWL--HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPS 451
           +LV+E+ ++ ++   L   P           +F    Q +        G+ + H H   +
Sbjct: 100 YLVFEFVDH-TILDDLELFPNGLDYQVVQKYLF----QIIN-------GIGFCHSH---N 144

Query: 452 IVHRDIRTNNIQLDSRFKAKIANFSLA----APA---TNDVM-----------------P 487
           I+HRDI+  NI +      K+ +F  A    AP     ++V                   
Sbjct: 145 IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGK 204

Query: 488 KFDVFAFGVVLLELLSGK 505
             DV+A G ++ E+  G+
Sbjct: 205 AVDVWAIGCLVTEMFMGE 222

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 74.2 bits (183), Expect = 1e-14
 Identities = 42/202 (20%), Positives = 80/202 (39%), Gaps = 54/202 (26%)

Query: 345 VYRA--TIDGKVLAVKKIKEDVTEELRILQR----------INHANLVKL--MGVSSDSQ 390
           V+ A    D + +AVK ++ D+  +     R          +NH  +V +   G +    
Sbjct: 28  VHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPA 87

Query: 391 GN-RFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQ 449
           G   ++V EY +  +L   +H +            +T  + + V  D    L + H++  
Sbjct: 88  GPLPYIVMEYVDGVTLRDIVHTEGP----------MTPKRAIEVIADACQALNFSHQN-- 135

Query: 450 PSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA---------TNDVM-------------- 486
             I+HRD++  NI + +    K+ +F +A            T  V+              
Sbjct: 136 -GIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGD 194

Query: 487 ---PKFDVFAFGVVLLELLSGK 505
               + DV++ G VL E+L+G+
Sbjct: 195 SVDARSDVYSLGCVLYEVLTGE 216

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 56/210 (26%)

Query: 338 HYSIGKS--------VYRAT--IDGKVLAVK-----KIKED----VTEELRILQRINHAN 378
           +Y + K+        V  A   + G+ +A+K     ++       +  E+RI++ +NH N
Sbjct: 16  NYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPN 75

Query: 379 LVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVA 438
           +VKL  V  +++   +L+ EYA  G +  +L    +         F    Q       + 
Sbjct: 76  IVKLFEVI-ETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARSKF---RQ-------IV 124

Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM------------ 486
           + +QY H+     IVHRD++  N+ LD+    KIA+F  +   T                
Sbjct: 125 SAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPPYAA 181

Query: 487 -----------PKFDVFAFGVVLLELLSGK 505
                      P+ DV++ GV+L  L+SG 
Sbjct: 182 PELFQGKKYDGPEVDVWSLGVILYTLVSGS 211

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 73.7 bits (182), Expect = 1e-14
 Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 24/144 (16%)

Query: 345 VYRAT-IDGKVLAVKKIKEDVTEE------LR---ILQRINHANLVKLMGVSSDSQGNRF 394
           VY+A    G+++A+K+I+ D  +E      +R   +L+ ++H N+V L+ V   S+    
Sbjct: 37  VYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIH-SERCLT 95

Query: 395 LVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
           LV+E+ E   L K L         S   I+L   Q LR       G+ + H+H    I+H
Sbjct: 96  LVFEFMEK-DLKKVLDENKTGLQDSQIKIYL--YQLLR-------GVAHCHQH---RILH 142

Query: 455 RDIRTNNIQLDSRFKAKIANFSLA 478
           RD++  N+ ++S    K+A+F LA
Sbjct: 143 RDLKPQNLLINSDGALKLADFGLA 166

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 74.6 bits (183), Expect = 1e-14
 Identities = 49/350 (14%), Positives = 97/350 (27%), Gaps = 93/350 (26%)

Query: 280 GSSLESADLIPMKENSKSDRFEPKLAQNKLLPGVSGYLGK-PIVYE-------IEVIMES 331
              + S   +        + ++ KL   KLL G+S  +   P  +E       I+   E 
Sbjct: 2   SPQMSSLGTVDAPNFIVGNPWDDKL-IFKLLSGLSKPVSSYPNTFEWQCKLPAIKPKTEF 60

Query: 332 TMNLSEHYSIGK--------SVYRAT-------IDGKVLAVKKIKED-------VTEELR 369
            +  S+   +           VY AT        + +   +K  K          T+ + 
Sbjct: 61  QLG-SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLME 119

Query: 370 ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQ 429
            L+       +K        Q    LV E    G+L   ++    +         +    
Sbjct: 120 RLKPSMQHMFMKFYSAHLF-QNGSVLVGELYSYGTLLNAINLYKNTPEKV-----MPQGL 173

Query: 430 RLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA-----------KIANFSLA 478
            +  A+ +   ++ +H+     I+H DI+ +N  L + F              + +   +
Sbjct: 174 VISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQS 230

Query: 479 ----APATNDVMPKF---------------------DVFAFGVVLLELLSGKKATRTTEN 513
                     +                         D F     +  +L G       E 
Sbjct: 231 IDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEG 290

Query: 514 GKTAV-----------LWKEIREV-LKVEEK----REERLRNWMDPNLES 547
           G+              +W E   V L + +       + LR  +    + 
Sbjct: 291 GECKPEGLFRRLPHLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQ 340

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 75.3 bits (185), Expect = 2e-14
 Identities = 33/194 (17%), Positives = 66/194 (34%), Gaps = 49/194 (25%)

Query: 345 VYRAT---IDGKVLAVKKIKEDVTE--------ELRILQRINHANLVKL--MGVSSDSQG 391
           +Y A    ++G+ + +K +              E + L  + H ++V++      +D  G
Sbjct: 96  IYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHG 155

Query: 392 NR--FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQ 449
           +   ++V EY    SL +    K            L  ++ +   L++   L Y+H    
Sbjct: 156 DPVGYIVMEYVGGQSLKRSKGQK------------LPVAEAIAYLLEILPALSYLHSI-- 201

Query: 450 PSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------AP--ATNDVMPKFDV 491
             +V+ D++  NI L    + K+ +                    AP           D+
Sbjct: 202 -GLVYNDLKPENIMLTEE-QLKLIDLGAVSRINSFGYLYGTPGFQAPEIVRTGPTVATDI 259

Query: 492 FAFGVVLLELLSGK 505
           +  G  L  L    
Sbjct: 260 YTVGRTLAALTLDL 273

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 43/227 (18%), Positives = 81/227 (35%), Gaps = 66/227 (29%)

Query: 330 ESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK------------EDVTEE 367
           +  +   + Y + +         V R      G+  AVK +             ED+  E
Sbjct: 17  DDDVLFEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKRE 76

Query: 368 LRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSL-DKWL---HPKSKSSSSSGSVI 423
             I   + H ++V+L+   S   G  ++V+E+ +   L  + +         S +  S  
Sbjct: 77  ASICHMLKHPHIVELLETYSSD-GMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHY 135

Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA---KIANFSLAA- 479
                        +   L+Y H++   +I+HRD++ + + L S+  +   K+  F +A  
Sbjct: 136 MRQ----------ILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQ 182

Query: 480 -PATNDVM---------------------PKFDVFAFGVVLLELLSG 504
              +  V                         DV+  GV+L  LLSG
Sbjct: 183 LGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSG 229

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 41/201 (20%), Positives = 83/201 (41%), Gaps = 51/201 (25%)

Query: 341 IGK----SVYRATI--DGKVLAVKKI-------KEDVTEELRILQRINHANLVKLMGVSS 387
           IG+    +VY A     G+ +A++++       KE +  E+ +++   + N+V  +  S 
Sbjct: 28  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLD-SY 86

Query: 388 DSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH 447
                 ++V EY   GSL   +               +   Q   V  +    L+++H +
Sbjct: 87  LVGDELWVVMEYLAGGSLTDVVTETC-----------MDEGQIAAVCRECLQALEFLHSN 135

Query: 448 AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDV------------M--------- 486
               ++HRDI+++NI L      K+ +F   A  T +             M         
Sbjct: 136 ---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKA 192

Query: 487 --PKFDVFAFGVVLLELLSGK 505
             PK D+++ G++ +E++ G+
Sbjct: 193 YGPKVDIWSLGIMAIEMIEGE 213

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 46/223 (20%), Positives = 78/223 (34%), Gaps = 63/223 (28%)

Query: 331 STMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK-------------EDVTEE 367
               + + Y IG+         V +      G   A K IK             E++  E
Sbjct: 6   KQQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIERE 65

Query: 368 LRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTW 427
           + IL+++ H N++ L  V  +   +  L+ E    G L  +L  K   S    +      
Sbjct: 66  VSILRQVLHHNVITLHDVYENRT-DVVLILELVSGGELFDFLAQKESLSEEEATSFIKQ- 123

Query: 428 SQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA----KIANFSLA----- 478
                    + +G+ Y+H      I H D++  NI L  +       K+ +F LA     
Sbjct: 124 ---------ILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED 171

Query: 479 --------------AP---ATNDVMPKFDVFAFGVVLLELLSG 504
                         AP       +  + D+++ GV+   LLSG
Sbjct: 172 GVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 214

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 72.6 bits (179), Expect = 3e-14
 Identities = 45/220 (20%), Positives = 79/220 (35%), Gaps = 63/220 (28%)

Query: 334 NLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK-------------EDVTEELRI 370
            + +HY +G+         V +      GK  A K IK             E++  E+ I
Sbjct: 2   MVEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNI 61

Query: 371 LQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQR 430
           L+ I H N++ L  +  +   +  L+ E    G L  +L  K   +    +         
Sbjct: 62  LREIRHPNIITLHDIFENKT-DVVLILELVSGGELFDFLAEKESLTEDEATQFLKQ---- 116

Query: 431 LRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA----KIANFSLA-------- 478
                 + +G+ Y+H      I H D++  NI L  +       K+ +F +A        
Sbjct: 117 ------ILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNE 167

Query: 479 -----------AP---ATNDVMPKFDVFAFGVVLLELLSG 504
                      AP       +  + D+++ GV+   LLSG
Sbjct: 168 FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 207

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 34/238 (14%), Positives = 78/238 (32%), Gaps = 56/238 (23%)

Query: 310 LPGVSGYLGKPIVYEIEVIMESTMNLSEHYSIGK---------SVYRAT--IDGKVLAVK 358
           +     +    +    +        +++ Y + K          V        G+  A+K
Sbjct: 1   MAHHHHHHSSGLEVLFQGPEPKKYAVTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALK 60

Query: 359 KI--KEDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVY---EYAENGSL-DKWLHP 411
            +       +E+    +     ++V ++ V  +    +  +    E  E G L  +    
Sbjct: 61  LLYDSPKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQER 120

Query: 412 KSKS-SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA 470
             ++ +    + I             +   +Q++H H   +I HRD++  N+   S+ K 
Sbjct: 121 GDQAFTEREAAEIMRD----------IGTAIQFLHSH---NIAHRDVKPENLLYTSKEKD 167

Query: 471 ---KIANFSLAAPATNDVM---------------------PKFDVFAFGVVLLELLSG 504
              K+ +F  A   T + +                        D+++ GV++  LL G
Sbjct: 168 AVLKLTDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 225

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 72.2 bits (178), Expect = 4e-14
 Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 26/145 (17%)

Query: 345 VYRATID--GKVLAVKKIKEDVTEE------LR---ILQRINHANLVKLMGVSSDSQGNR 393
           VY+A  +  G+  A+KKI+ +  +E      +R   IL+ + H+N+VKL  V   ++   
Sbjct: 18  VYKA-QNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIH-TKKRL 75

Query: 394 FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIV 453
            LV+E+ +   L K L                   Q L        G+ Y H+     ++
Sbjct: 76  VLVFEHLDQ-DLKKLL--DVCEGGLESVTAKSFLLQLLN-------GIAYCHDR---RVL 122

Query: 454 HRDIRTNNIQLDSRFKAKIANFSLA 478
           HRD++  N+ ++   + KIA+F LA
Sbjct: 123 HRDLKPQNLLINREGELKIADFGLA 147

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 45/218 (20%), Positives = 82/218 (37%), Gaps = 54/218 (24%)

Query: 327 VIMESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK-----EDVTEELRIL 371
           +   +   LS+ + +           VYR       K  A+K +K     + V  E+ +L
Sbjct: 43  IDGSNRDALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVL 102

Query: 372 QRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRL 431
            R++H N++KL  +  ++     LV E    G L   +  K   S    +          
Sbjct: 103 LRLSHPNIIKLKEI-FETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQ----- 156

Query: 432 RVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA---KIANFSLAAPATNDVM-- 486
                +   + Y+HE+    IVHRD++  N+   +       KIA+F L+    + V+  
Sbjct: 157 -----ILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMK 208

Query: 487 --------------------PKFDVFAFGVVLLELLSG 504
                               P+ D+++ G++   LL G
Sbjct: 209 TVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCG 246

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 46/224 (20%), Positives = 80/224 (35%), Gaps = 68/224 (30%)

Query: 334 NLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK---------------EDVTEEL 368
            L + Y + K         V  A      K +A+K I                 +V  E+
Sbjct: 7   ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEI 66

Query: 369 RILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWS 428
            IL+++NH  ++K+         + ++V E  E G L   +    +   ++  + F    
Sbjct: 67  EILKKLNHPCIIKIKNFFDAE--DYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQ-- 122

Query: 429 QRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR---FKAKIANFSLA------- 478
                   +   +QY+HE+    I+HRD++  N+ L S+      KI +F  +       
Sbjct: 123 --------MLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETS 171

Query: 479 ------------AP------ATNDVMPKFDVFAFGVVLLELLSG 504
                       AP       T       D ++ GV+L   LSG
Sbjct: 172 LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSG 215

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 73.2 bits (180), Expect = 5e-14
 Identities = 48/227 (21%), Positives = 84/227 (37%), Gaps = 65/227 (28%)

Query: 329 MES--TMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK-------------ED 363
           ME+     + + Y IG+         V +      G   A K IK             E+
Sbjct: 2   METFKQQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREE 61

Query: 364 VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVI 423
           +  E+ IL+++ H N++ L  V  +++ +  L+ E    G L  +L  K           
Sbjct: 62  IEREVSILRQVLHPNIITLHDV-YENRTDVVLILELVSGGELFDFLAQKE---------- 110

Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR----FKAKIANFSLA- 478
            L+  +       + +G+ Y+H      I H D++  NI L  +       K+ +F LA 
Sbjct: 111 SLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAH 167

Query: 479 ------------------AP---ATNDVMPKFDVFAFGVVLLELLSG 504
                             AP       +  + D+++ GV+   LLSG
Sbjct: 168 EIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 214

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 72.5 bits (178), Expect = 5e-14
 Identities = 42/203 (20%), Positives = 76/203 (37%), Gaps = 53/203 (26%)

Query: 341 IGK----SVYRA--TIDGKVLAVKKIKEDVT--EELRILQRINHANLVKLMGVSSDSQGN 392
           +G+     V+R      G   AVKK++ +V   EEL     ++   +V L G  +  +G 
Sbjct: 66  VGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVEELVACAGLSSPRIVPLYG--AVREGP 123

Query: 393 RFLVY-EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPS 451
              ++ E  E GSL + +               L   + L        GL+Y+H      
Sbjct: 124 WVNIFMELLEGGSLGQLIKQMGC----------LPEDRALYYLGQALEGLEYLHTR---R 170

Query: 452 IVHRDIRTNNIQLDSR-FKAKIANFSLAAPATNDVM------------------------ 486
           I+H D++ +N+ L S   +A + +F  A     D +                        
Sbjct: 171 ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMG 230

Query: 487 ----PKFDVFAFGVVLLELLSGK 505
                K D+++   ++L +L+G 
Sbjct: 231 KPCDAKVDIWSSCCMMLHMLNGC 253

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 71.9 bits (177), Expect = 6e-14
 Identities = 49/230 (21%), Positives = 84/230 (36%), Gaps = 69/230 (30%)

Query: 330 ESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKI----------------KED 363
            ST    E+Y   +         V R       K  AVK I                +E 
Sbjct: 10  HSTHGFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREA 69

Query: 364 VTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSV 422
             +E+ IL++++ H N+++L      +    FLV++  + G L  +L  K   S      
Sbjct: 70  TLKEVDILRKVSGHPNIIQLKDTYETNT-FFFLVFDLMKKGELFDYLTEKVTLSEKETRK 128

Query: 423 IFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---- 478
           I             +   +  +H+    +IVHRD++  NI LD     K+ +F  +    
Sbjct: 129 IMRA----------LLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDFGFSCQLD 175

Query: 479 ---------------AP-----ATNDVM----PKFDVFAFGVVLLELLSG 504
                          AP     + ND       + D+++ GV++  LL+G
Sbjct: 176 PGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAG 225

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 23/175 (13%), Positives = 51/175 (29%), Gaps = 34/175 (19%)

Query: 344 SVYRATID---GKVLAVKKIKEDVTE----------ELRILQRINHANLVKLMGVSSDSQ 390
             ++A  D    + +A+  +                    L RI+   + +++ V    +
Sbjct: 46  QFWQAL-DTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHT-R 103

Query: 391 GNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQP 450
               +V E+   GSL +                  +    +R    +A      H     
Sbjct: 104 AGGLVVAEWIRGGSLQEVADTS------------PSPVGAIRAMQSLAAAADAAHRAG-- 149

Query: 451 SIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELLSGK 505
            +       + +++       +A  +    A     P+ D+   G  L  LL  +
Sbjct: 150 -VALSIDHPSRVRVSIDGDVVLAYPATMPDAN----PQDDIRGIGASLYALLVNR 199

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 41/201 (20%), Positives = 83/201 (41%), Gaps = 51/201 (25%)

Query: 341 IGK----SVYRATI--DGKVLAVKKI-------KEDVTEELRILQRINHANLVKLMGVSS 387
           IG+     V  A     G+ +AVK +       +E +  E+ I++   H N+V++   S 
Sbjct: 53  IGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYK-SY 111

Query: 388 DSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH 447
                 +++ E+ + G+L   +               L   Q   V   V   L Y+H  
Sbjct: 112 LVGEELWVLMEFLQGGALTDIVSQVR-----------LNEEQIATVCEAVLQALAYLHAQ 160

Query: 448 AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDV------------M--------- 486
               ++HRDI++++I L    + K+++F   A  + DV            M         
Sbjct: 161 ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSL 217

Query: 487 --PKFDVFAFGVVLLELLSGK 505
              + D+++ G++++E++ G+
Sbjct: 218 YATEVDIWSLGIMVIEMVDGE 238

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 71.7 bits (176), Expect = 1e-13
 Identities = 45/238 (18%), Positives = 83/238 (34%), Gaps = 47/238 (19%)

Query: 267 HLQRKRVRILNRNGSSLESADLIPMKENSKSDRFEPKLAQNKLLPGVSGYLGKPIVYEIE 326
           +L R++ R   R+     S     + E  K +  +PK  +N        Y       +  
Sbjct: 31  NLNREQRRAFIRSLRDDPSQSANLLAEAKKLNDAQPKGTENL-------YFQSMGPEDEL 83

Query: 327 VIMESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKI---------------K 361
               +     + Y             V R      G   AVK +               +
Sbjct: 84  PDWAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVR 143

Query: 362 EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSG 420
           E    E  IL+++  H +++ L+     S    FLV++    G L  +L  K   S    
Sbjct: 144 EATRRETHILRQVAGHPHIITLIDSYESSS-FMFLVFDLMRKGELFDYLTEKVALSEKET 202

Query: 421 SVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
             I  +          +   + ++H +   +IVHRD++  NI LD   + ++++F  +
Sbjct: 203 RSIMRS----------LLEAVSFLHAN---NIVHRDLKPENILLDDNMQIRLSDFGFS 247

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 36/168 (21%)

Query: 337 EHYSIGK--------SVYRAT-IDGKVLAVKKIK---------EDVTEELRILQRINHAN 378
             YSI K         V++      ++ A+K +          +    E+  L ++   +
Sbjct: 9   RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 68

Query: 379 L--VKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALD 436
              ++L       Q   ++V E   N  L+ WL  K              W         
Sbjct: 69  DKIIRLYDYEITDQ-YIYMVMECG-NIDLNSWLKKKKSIDPW---ERKSYWKN------- 116

Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND 484
           +   +  +H+H    IVH D++  N  +      K+ +F +A     D
Sbjct: 117 MLEAVHTIHQH---GIVHSDLKPANFLIVDG-MLKLIDFGIANQMQPD 160

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 70.7 bits (174), Expect = 2e-13
 Identities = 50/223 (22%), Positives = 78/223 (34%), Gaps = 63/223 (28%)

Query: 331 STMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK-------------EDVTEE 367
              N+ ++Y  G+         V +      G   A K IK             ED+  E
Sbjct: 5   RQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIERE 64

Query: 368 LRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTW 427
           + IL+ I H N++ L  V  +   +  L+ E    G L  +L  K   +    +      
Sbjct: 65  VSILKEIQHPNVITLHEVYENKT-DVILILELVAGGELFDFLAEKESLTEEEATEFLKQ- 122

Query: 428 SQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA----KIANFSLA----- 478
                    + NG+ Y+H      I H D++  NI L  R       KI +F LA     
Sbjct: 123 ---------ILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF 170

Query: 479 --------------AP---ATNDVMPKFDVFAFGVVLLELLSG 504
                         AP       +  + D+++ GV+   LLSG
Sbjct: 171 GNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 31/150 (20%)

Query: 345 VYRA--TIDGKVLAVKKIKEDVTEE------LR---ILQRINHANLVKLMGVSSDSQGNR 393
           VY+A  T+  + +A+K+I+ +  EE      +R   +L+ + H N+++L  V        
Sbjct: 50  VYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIH-HNHRL 108

Query: 394 FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIV 453
            L++EYAEN  L K++        S   +    + Q +        G+ + H       +
Sbjct: 109 HLIFEYAEN-DLKKYMD--KNPDVSMRVIKSFLY-QLIN-------GVNFCHSR---RCL 154

Query: 454 HRDIRTNNIQLDSRFKA-----KIANFSLA 478
           HRD++  N+ L     +     KI +F LA
Sbjct: 155 HRDLKPQNLLLSVSDASETPVLKIGDFGLA 184

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 40/225 (17%), Positives = 71/225 (31%), Gaps = 72/225 (32%)

Query: 337 EHYSIGK--------SVYRAT-IDGKVLAVKKIK---------EDVTEELRILQRINHAN 378
             YSI K         V++      ++ A+K +          +    E+  L ++   +
Sbjct: 28  RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 87

Query: 379 L--VKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALD 436
              ++L       Q   ++V E   N  L+ WL  K              W         
Sbjct: 88  DKIIRLYDYEITDQ-YIYMVMECG-NIDLNSWLKKKKSIDPW---ERKSYWKN------- 135

Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---APATNDVM------- 486
           +   +  +H+H    IVH D++  N  +      K+ +F +A    P T  V+       
Sbjct: 136 MLEAVHTIHQH---GIVHSDLKPANFLIVDG-MLKLIDFGIANQMQPDTTSVVKDSQVGT 191

Query: 487 --------------------------PKFDVFAFGVVLLELLSGK 505
                                     PK DV++ G +L  +  GK
Sbjct: 192 VNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGK 236

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 42/225 (18%), Positives = 82/225 (36%), Gaps = 58/225 (25%)

Query: 326 EVIMESTMNLSEHYSIGK---------SVYRAT--IDGKVLAVKKIK---------EDVT 365
            +  +S  N +  Y +            V +      G+  A K +K          ++ 
Sbjct: 17  NLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEIL 76

Query: 366 EELRILQRINHA-NLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIF 424
            E+ +L+       ++ L  V  ++     L+ EYA  G +     P+     S   VI 
Sbjct: 77  HEIAVLELAKSCPRVINLHEVYENTS-EIILILEYAAGGEIFSLCLPELAEMVSENDVIR 135

Query: 425 LTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA---KIANFSLA--- 478
           L     ++    +  G+ Y+H++   +IVH D++  NI L S +     KI +F ++   
Sbjct: 136 L-----IK---QILEGVYYLHQN---NIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKI 184

Query: 479 ----------------AP---ATNDVMPKFDVFAFGVVLLELLSG 504
                           AP     + +    D++  G++   LL+ 
Sbjct: 185 GHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTH 229

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 69.2 bits (170), Expect = 3e-13
 Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 57/211 (27%)

Query: 338 HYSIGKS--------VYRAT--IDGKVLAVKKI------KEDVTE----ELRILQRINHA 377
           HY +G +        V      + G  +AVK +        DV      E++ L+   H 
Sbjct: 12  HYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHP 71

Query: 378 NLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDV 437
           +++KL  V S +  + F+V EY   G L  ++    +        +F    Q++      
Sbjct: 72  HIIKLYQVIS-TPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLF----QQI------ 120

Query: 438 ANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM----------- 486
            + + Y H H    +VHRD++  N+ LD+   AKIA+F L+   ++              
Sbjct: 121 LSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYA 177

Query: 487 ------------PKFDVFAFGVVLLELLSGK 505
                       P+ D+++ GV+L  LL G 
Sbjct: 178 APEVISGRLYAGPEVDIWSCGVILYALLCGT 208

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 70.6 bits (173), Expect = 4e-13
 Identities = 41/225 (18%), Positives = 72/225 (32%), Gaps = 72/225 (32%)

Query: 337 EHYSIGK--------SVYRAT-IDGKVLAVKKI-KEDVTE--------ELRILQRINHAN 378
             YSI K         V++      ++ A+K +  E+           E+  L ++   +
Sbjct: 56  RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 115

Query: 379 L--VKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALD 436
              ++L       Q   ++V E   N  L+ WL  K              W         
Sbjct: 116 DKIIRLYDYEITDQ-YIYMVMECG-NIDLNSWLKKKKSIDPW---ERKSYWKN------- 163

Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---APATNDVM------- 486
           +   +  +H+H    IVH D++  N  +      K+ +F +A    P T  V+       
Sbjct: 164 MLEAVHTIHQH---GIVHSDLKPANFLIVDG-MLKLIDFGIANQMQPDTTSVVKDSQVGA 219

Query: 487 --------------------------PKFDVFAFGVVLLELLSGK 505
                                     PK DV++ G +L  +  GK
Sbjct: 220 VNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGK 264

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 26/152 (17%)

Query: 341 IGK----SVYRAT--IDGKVLAVKKI-------KEDVTEELRILQRINHANLVKLMGVSS 387
           +G      VY+A     G + A K I        ED   E+ IL   +H  +VKL+G + 
Sbjct: 27  LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLG-AY 85

Query: 388 DSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH 447
              G  +++ E+   G++D  +    +          LT  Q   V   +   L ++H  
Sbjct: 86  YHDGKLWIMIEFCPGGAVDAIMLELDRG---------LTEPQIQVVCRQMLEALNFLHSK 136

Query: 448 AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
               I+HRD++  N+ +      ++A+F ++A
Sbjct: 137 ---RIIHRDLKAGNVLMTLEGDIRLADFGVSA 165

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 69.2 bits (170), Expect = 5e-13
 Identities = 32/204 (15%), Positives = 74/204 (36%), Gaps = 43/204 (21%)

Query: 327 VIMESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKI--KEDVTEELRILQRI 374
           + ++    + ++    +         V +       +  A+K +        E+ +  R 
Sbjct: 8   LQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRA 67

Query: 375 -NHANLVKLMGVSSDSQGNR---FLVYEYAENGSL-DKWLHPKSKS-SSSSGSVIFLTWS 428
               ++V+++ V  +    R    +V E  + G L  +      ++ +    S I  +  
Sbjct: 68  SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKS-- 125

Query: 429 QRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA---KIANFSLAAPATNDV 485
                   +   +QY+H     +I HRD++  N+   S+      K+ +F   A    + 
Sbjct: 126 --------IGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGF-AK---ET 170

Query: 486 M-----PKFDVFAFGVVLLELLSG 504
                    D+++ GV++  LL G
Sbjct: 171 TGEKYDKSCDMWSLGVIMYILLCG 194

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 69.3 bits (170), Expect = 5e-13
 Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 33/179 (18%)

Query: 319 KPIVYEIEVIMESTMNLSEHYS----IGK----SVYRA--TIDGKVLAVKKI-------- 360
            P+   +  +     +  E ++    IGK     V++       KV+A+K I        
Sbjct: 4   SPVQSGLPGMQNLKADPEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDE 63

Query: 361 KEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSG 420
            ED+ +E+ +L + +   + K  G S       +++ EY   GS    L P         
Sbjct: 64  IEDIQQEITVLSQCDSPYVTKYYG-SYLKDTKLWIIMEYLGGGSALDLLEPGP------- 115

Query: 421 SVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
               L  +Q   +  ++  GL Y+H       +HRDI+  N+ L    + K+A+F +A 
Sbjct: 116 ----LDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAG 167

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 69.1 bits (169), Expect = 9e-13
 Identities = 42/200 (21%), Positives = 83/200 (41%), Gaps = 48/200 (24%)

Query: 341 IGK----SVYRA--TIDGKVLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVS 386
           +G      V++      G V+A K I  ++          EL++L   N   +V   G +
Sbjct: 41  LGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYG-A 99

Query: 387 SDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE 446
             S G   +  E+ + GSLD+ L    +        +          ++ V  GL Y+ E
Sbjct: 100 FYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKV----------SIAVIKGLTYLRE 149

Query: 447 HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDV----------MP--------- 487
             +  I+HRD++ +NI ++SR + K+ +F ++    + +          M          
Sbjct: 150 --KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHY 207

Query: 488 --KFDVFAFGVVLLELLSGK 505
             + D+++ G+ L+E+  G+
Sbjct: 208 SVQSDIWSMGLSLVEMAVGR 227

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 68.0 bits (167), Expect = 1e-12
 Identities = 32/197 (16%), Positives = 66/197 (33%), Gaps = 50/197 (25%)

Query: 345 VYRA--TIDGKVLAVKKIKEDVTE----------ELRILQRINHANLVKLMGVSSDSQGN 392
           VY A  T+  +++A+K + E ++           E R   R+   ++V +        G 
Sbjct: 50  VYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEI-DGQ 108

Query: 393 RFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSI 452
            ++         L   L  +            L   + + +   + + L   H       
Sbjct: 109 LYVDMRLINGVDLAAMLRRQGP----------LAPPRAVAIVRQIGSALDAAHAAG---A 155

Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLAAPA-------TNDVM-----------------PK 488
            HRD++  NI + +   A + +F +A+           + +                  +
Sbjct: 156 THRDVKPENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHATYR 215

Query: 489 FDVFAFGVVLLELLSGK 505
            D++A   VL E L+G 
Sbjct: 216 ADIYALTCVLYECLTGS 232

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 32/176 (18%), Positives = 74/176 (42%), Gaps = 33/176 (18%)

Query: 326 EVIMESTMNLSEHYS----IGK----SVYRA--TIDGKVLAVKKIK------EDVTEELR 369
           E+ + +  + +  +     +G      VY+      G++ A+K +       E++ +E+ 
Sbjct: 13  EIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEIN 72

Query: 370 ILQRI-NHANLVKLMG-----VSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVI 423
           +L++  +H N+    G              +LV E+   GS+   +     ++       
Sbjct: 73  MLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNT------- 125

Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
            L       +  ++  GL ++H+H    ++HRDI+  N+ L    + K+ +F ++A
Sbjct: 126 -LKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGVSA 177

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 43/218 (19%), Positives = 76/218 (34%), Gaps = 60/218 (27%)

Query: 332 TMNLSEHYSIGKS-----------VYRAT--IDGKVLAVKKI----KEDVTEELRILQRI 374
                +HY +                +       +  AVK I    + +  +E+  L+  
Sbjct: 3   DSPFYQHYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKEITALKLC 62

Query: 375 -NHANLVKLMGVSSDSQGNRFLVYEYAENGSL-DKWLHPKSKSSSSSGSVIFLTWSQRLR 432
             H N+VKL  V  D   + FLV E    G L ++    K  S + +  ++         
Sbjct: 63  EGHPNIVKLHEVFHDQL-HTFLVMELLNGGELFERIKKKKHFSETEASYIM--------- 112

Query: 433 VALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA---KIANFSLAA--PATNDVM- 486
               + + + +MH+     +VHRD++  N+           KI +F  A   P  N  + 
Sbjct: 113 --RKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLK 167

Query: 487 --------------------PKFDVFAFGVVLLELLSG 504
                                  D+++ GV+L  +LSG
Sbjct: 168 TPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSG 205

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 38/143 (26%), Positives = 74/143 (51%), Gaps = 20/143 (13%)

Query: 344 SVYRAT--IDGKVLAVKKIK-----EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV 396
           SVY+A     G+++A+K++      +++ +E+ I+Q+ +  ++VK  G S     + ++V
Sbjct: 44  SVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYYG-SYFKNTDLWIV 102

Query: 397 YEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
            EY   GS+   +  ++K+         LT  +   +      GL+Y+H       +HRD
Sbjct: 103 MEYCGAGSVSDIIRLRNKT---------LTEDEIATILQSTLKGLEYLHFM---RKIHRD 150

Query: 457 IRTNNIQLDSRFKAKIANFSLAA 479
           I+  NI L++   AK+A+F +A 
Sbjct: 151 IKAGNILLNTEGHAKLADFGVAG 173

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 43/172 (25%)

Query: 362 EDVTEELRILQRINHANLVKLMGVSSD-SQGNRFLVYEYAENGSL-DKWLHPKSKSSSSS 419
           E V +E+ IL++++H N+VKL+ V  D ++ + ++V+E    G + +             
Sbjct: 81  EQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKP------- 133

Query: 420 GSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                L+  Q      D+  G++Y+H      I+HRDI+ +N+ +      KIA+F ++ 
Sbjct: 134 -----LSEDQARFYFQDLIKGIEYLHYQ---KIIHRDIKPSNLLVGEDGHIKIADFGVSN 185

Query: 480 -PATNDVM-------------------------PKFDVFAFGVVLLELLSGK 505
               +D +                            DV+A GV L   + G+
Sbjct: 186 EFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQ 237

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 67.3 bits (164), Expect = 3e-12
 Identities = 55/256 (21%), Positives = 88/256 (34%), Gaps = 100/256 (39%)

Query: 345 VYRATIDG-------KVLAVKKIKEDVT--------EELRILQRI-NHANLVKLMGVSSD 388
           V  A   G       + +AVK +KE  T         EL+IL  I +H N+V L+G  + 
Sbjct: 38  VIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTK 97

Query: 389 SQGNRFLVYEYAENGSLDKW-------------------------------LHPKSKSSS 417
             G   ++ E+ + G+L  +                               L  +  S +
Sbjct: 98  PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSIT 157

Query: 418 SSGSVI-------------------------FLTWSQRLRVALDVANGLQYMHEHAQPSI 452
           SS S                           FLT    +  +  VA G++++   A    
Sbjct: 158 SSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFL---ASRKC 214

Query: 453 VHRDIRTNNIQLDSRFKAKIANFSLA---------APATNDVMP---------------- 487
           +HRD+   NI L  +   KI +F LA             +  +P                
Sbjct: 215 IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTI 274

Query: 488 KFDVFAFGVVLLELLS 503
           + DV++FGV+L E+ S
Sbjct: 275 QSDVWSFGVLLWEIFS 290

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 67.4 bits (165), Expect = 4e-12
 Identities = 46/204 (22%), Positives = 86/204 (42%), Gaps = 62/204 (30%)

Query: 345 VYRATI--DGKVLAVKKIKEDVTEELR---ILQRINHANLVKLMGV---SSDSQGNRFL- 395
           VY+A +   G+++A+KK+ +D   + R   I+++++H N+V+L      S + +   +L 
Sbjct: 70  VYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN 129

Query: 396 -VYEYAENGSLDKWLHPKSKSSSSSGSVI------FLTWSQRLRVALDVANGLQYMHEHA 448
            V +Y     + + ++  ++  S +   +         + Q  R        L Y+H   
Sbjct: 130 LVLDY-----VPETVYRVARHYSRAKQTLPVIYVKLYMY-QLFR-------SLAYIHSF- 175

Query: 449 QPSIVHRDIRTNNIQLDSR-FKAKIANFSLA-------------------APATNDVM-- 486
              I HRDI+  N+ LD      K+ +F  A                   AP   +++  
Sbjct: 176 --GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAP---ELIFG 230

Query: 487 -----PKFDVFAFGVVLLELLSGK 505
                   DV++ G VL ELL G+
Sbjct: 231 ATDYTSSIDVWSAGCVLAELLLGQ 254

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 66.5 bits (163), Expect = 4e-12
 Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 38/168 (22%)

Query: 334 NLSEHYSIGK---------SVYRAT--IDGKVLAVKKI-------KEDVTEELRILQRI- 374
              + Y + +          V      I  +  AVK I       +  V  E+ +L +  
Sbjct: 9   RFEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQ 68

Query: 375 NHANLVKLMGVSSDSQGNRFLVYEYAENGSL-DKWLHPKSKSSSSSGSVIFLTWSQRLRV 433
            H N+++L+    +     +LV+E    GS+    +H +   +    SV+          
Sbjct: 69  GHRNVLELIEFFEEED-RFYLVFEKMRGGSILSH-IHKRRHFNELEASVVVQ-------- 118

Query: 434 ALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA---KIANFSLA 478
             DVA+ L ++H      I HRD++  NI  +   +    KI +F L 
Sbjct: 119 --DVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICDFDLG 161

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 66.9 bits (163), Expect = 6e-12
 Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 33/172 (19%)

Query: 329 MESTMNLSEHYS----IGK------SVYRA--TIDGKVLAVKKIK---------EDVTEE 367
           M S +     Y     IGK      +V  A     G+ + V++I            +  E
Sbjct: 17  MSSFLPEGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGE 76

Query: 368 LRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTW 427
           L + +  NH N+V     +  +    ++V  +   GS    +        +  ++ +   
Sbjct: 77  LHVSKLFNHPNIVPYRA-TFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAY--- 132

Query: 428 SQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
                +   V   L Y+H       VHR ++ ++I +    K  ++      
Sbjct: 133 -----ILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNL 176

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 66.2 bits (162), Expect = 9e-12
 Identities = 44/204 (21%), Positives = 81/204 (39%), Gaps = 63/204 (30%)

Query: 345 VYRATI--DGKVLAVKKIKEDVTEELR---ILQRINHANLVKLMGV--SSDSQGNR---F 394
           V++A +    +V A+KK+ +D   + R   I++ + H N+V L     S+  + +     
Sbjct: 56  VFQAKLVESDEV-AIKKVLQDKRFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN 114

Query: 395 LVYEYAENGSLDKWLHPKSKSSSSSGSVI------FLTWSQRLRVALDVANGLQYMHEHA 448
           LV EY     + + ++  S+  +     +         + Q LR        L Y+H   
Sbjct: 115 LVLEY-----VPETVYRASRHYAKLKQTMPMLLIKLYMY-QLLR-------SLAYIHSI- 160

Query: 449 QPSIVHRDIRTNNIQLDSR-FKAKIANFSLA-------------------APATNDVM-- 486
              I HRDI+  N+ LD      K+ +F  A                   AP   +++  
Sbjct: 161 --GICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSYICSRYYRAP---ELIFG 215

Query: 487 -----PKFDVFAFGVVLLELLSGK 505
                   D+++ G V+ EL+ G+
Sbjct: 216 ATNYTTNIDIWSTGCVMAELMQGQ 239

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 66.7 bits (163), Expect = 9e-12
 Identities = 49/211 (23%), Positives = 84/211 (39%), Gaps = 57/211 (27%)

Query: 338 HYSIGKS--------VYRAT--IDGKVLAVKKI------KEDVTE----ELRILQRINHA 377
           HY +G +        V      + G  +AVK +        DV      E++ L+   H 
Sbjct: 17  HYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHP 76

Query: 378 NLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDV 437
           +++KL  V   +  + F+V EY   G L  ++    +        +F    Q       +
Sbjct: 77  HIIKLYQV-ISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLF---QQ-------I 125

Query: 438 ANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM----------- 486
            +G+ Y H H    +VHRD++  N+ LD+   AKIA+F L+   ++              
Sbjct: 126 LSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYA 182

Query: 487 ------------PKFDVFAFGVVLLELLSGK 505
                       P+ D+++ GV+L  LL G 
Sbjct: 183 APEVISGRLYAGPEVDIWSSGVILYALLCGT 213

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 47/212 (22%), Positives = 78/212 (36%), Gaps = 58/212 (27%)

Query: 337 EHYSIGKS--------VYRAT--IDGKVLAVK--------KIKEDVTEELRILQRINHAN 378
           E + + ++        V  A   +  + +AVK           E++ +E+ I + +NH N
Sbjct: 7   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 66

Query: 379 LVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVA 438
           +VK  G        ++L  EY   G L   + P            F     +L       
Sbjct: 67  VVKFYGHRR-EGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF----HQL------M 115

Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKF--------- 489
            G+ Y+H      I HRDI+  N+ LD R   KI++F LA     +   +          
Sbjct: 116 AGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLP 172

Query: 490 -----------------DVFAFGVVLLELLSG 504
                            DV++ G+VL  +L+G
Sbjct: 173 YVAPELLKRREFHAEPVDVWSCGIVLTAMLAG 204

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 62/224 (27%)

Query: 328 IMESTMNLSEHYS----IGKSVY---RATID---GKVLAVKKIK---EDVTE------EL 368
           I +ST  + + Y     IG        A  D    + +A+KK+    ++ T       EL
Sbjct: 16  IGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYREL 75

Query: 369 RILQRINHANLVKLMGV-----SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVI 423
            +++ +NH N++ L+ V     S +   + ++V E  +    +  L    +       + 
Sbjct: 76  VLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDA---N--LCQVIQMELDHERMS 130

Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN 483
           +L + Q L        G++++H      I+HRD++ +NI + S    KI +F LA  A  
Sbjct: 131 YLLY-QMLC-------GIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT 179

Query: 484 DVM----------------------PKFDVFAFGVVLLELLSGK 505
             M                         D+++ G ++ E++ G 
Sbjct: 180 SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGG 223

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 46/220 (20%), Positives = 81/220 (36%), Gaps = 67/220 (30%)

Query: 338 HYSIGKS--------VYRAT--IDGKVLAVKKIK-----------EDVTEELRILQRINH 376
            Y +G          V            AVK +K            +V +E+++L+R+ H
Sbjct: 6   KYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRH 65

Query: 377 ANLVKLMGV-SSDSQGNRFLVYEYAENGS---LDKWLHPKSKSSSSSGSVIFLTWSQRLR 432
            N+++L+ V  ++ +   ++V EY   G    LD     +     + G   F     +L 
Sbjct: 66  KNVIQLVDVLYNEEKQKMYMVMEYCVCGMQEMLDSVPEKRFPVCQAHG--YF----CQL- 118

Query: 433 VALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA---PATNDVM--- 486
                 +GL+Y+H      IVH+DI+  N+ L +    KI+   +A    P   D     
Sbjct: 119 -----IDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRT 170

Query: 487 ---------------------PKFDVFAFGVVLLELLSGK 505
                                 K D+++ GV L  + +G 
Sbjct: 171 SQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGL 210

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 65.0 bits (158), Expect = 2e-11
 Identities = 35/231 (15%), Positives = 64/231 (27%), Gaps = 79/231 (34%)

Query: 345 VYRAT--IDGKVLAVK----------KIKEDVTEELRILQRI------------------ 374
              AT    G+   V              + + EE+  L+ +                  
Sbjct: 89  YLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFP 148

Query: 375 -------NHANLVKLMGVSSD-SQGNRFLVYEYAE--NGSLDKWLHPKSKSSSSSGSVIF 424
                      ++++     D    +RF +Y   +    +  + L   S +  S      
Sbjct: 149 FDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKS------ 202

Query: 425 LTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA--- 481
           L    RL++ L V   L  +H +    +VH  +R  +I LD R    +  F         
Sbjct: 203 LVHHARLQLTLQVIRLLASLHHY---GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAR 259

Query: 482 -----TNDVMP----------------------KFDVFAFGVVLLELLSGK 505
                +    P                       FD +A G+V+  +    
Sbjct: 260 VVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCAD 310

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 46/223 (20%), Positives = 91/223 (40%), Gaps = 61/223 (27%)

Query: 328 IMESTMNLSEHYS----IGKSVYRA------TIDGKVLAVKKIK---EDVTE------EL 368
           + ++   L + Y     +G   Y +         G+ +A+KK+    +          EL
Sbjct: 15  VNKTAWELPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYREL 74

Query: 369 RILQRINHANLVKLMGV-----SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVI 423
            +L+ + H N++ L+ V     S  +  + +LV  + +    D  L        S   + 
Sbjct: 75  LLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQT---D--LQKIMGLKFSEEKIQ 129

Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN 483
           +L + Q L+       GL+Y+H      +VHRD++  N+ ++   + KI +F LA  A  
Sbjct: 130 YLVY-QMLK-------GLKYIHS---AGVVHRDLKPGNLAVNEDCELKILDFGLARHADA 178

Query: 484 D--------------VM-------PKFDVFAFGVVLLELLSGK 505
           +              V+          D+++ G ++ E+L+GK
Sbjct: 179 EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGK 221

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 51/220 (23%), Positives = 87/220 (39%), Gaps = 58/220 (26%)

Query: 329 MESTMNLSEHYSIGKS--------VYRAT--IDGKVLAVK-----KIKED-----VTEEL 368
           M  +      Y I ++        V  AT     + +A+K      +K+      V  E+
Sbjct: 1   MAISKRHIGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREI 60

Query: 369 RILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWS 428
             L+ + H +++KL  V   +  +  +V EYA  G L  ++  K + +   G   F    
Sbjct: 61  SYLKLLRHPHIIKLYDV-ITTPTDIVMVIEYA-GGELFDYIVEKKRMTEDEGRRFF---Q 115

Query: 429 QRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM-- 486
           Q       +   ++Y H H    IVHRD++  N+ LD     KIA+F L+   T+     
Sbjct: 116 Q-------IICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLK 165

Query: 487 ---------------------PKFDVFAFGVVLLELLSGK 505
                                P+ DV++ G+VL  +L G+
Sbjct: 166 TSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGR 205

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 40/178 (22%), Positives = 74/178 (41%), Gaps = 41/178 (23%)

Query: 326 EVIMESTMNLSEHYS----IGK----SVYRA--TIDGKVLAVKKIK---EDVTE------ 366
                S   + + Y     IG      V  A   ++ +V+A+KKI    ED+ +      
Sbjct: 42  MPRPHSDWQIPDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILR 101

Query: 367 ELRILQRINHANLVKLMGVSSDSQGNRF----LVYEYAENGSLDKWLHP--KSKSSSSSG 420
           E+ IL R+NH ++VK++ +       +F    +V E A+    D       ++    +  
Sbjct: 102 EIAILNRLNHDHVVKVLDIVIPKDVEKFDELYVVLEIAD---SD--FKKLFRTPVYLTEL 156

Query: 421 SVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            +  L +   L        G++Y+H      I+HRD++  N  ++     K+ +F LA
Sbjct: 157 HIKTLLY-NLLV-------GVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFGLA 203

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 47/212 (22%), Positives = 78/212 (36%), Gaps = 58/212 (27%)

Query: 337 EHYSIGKS--------VYRAT--IDGKVLAVK--------KIKEDVTEELRILQRINHAN 378
           E + + ++        V  A   +  + +AVK           E++ +E+ I + +NH N
Sbjct: 7   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 66

Query: 379 LVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVA 438
           +VK  G        ++L  EY   G L   + P            F     +L       
Sbjct: 67  VVKFYGHRR-EGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFF----HQL------M 115

Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKF--------- 489
            G+ Y+H      I HRDI+  N+ LD R   KI++F LA     +   +          
Sbjct: 116 AGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLP 172

Query: 490 -----------------DVFAFGVVLLELLSG 504
                            DV++ G+VL  +L+G
Sbjct: 173 YVAPELLKRREFHAEPVDVWSCGIVLTAMLAG 204

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 34/153 (22%), Positives = 67/153 (43%), Gaps = 20/153 (13%)

Query: 341 IGK----SVYRATI--DGKVLAVKKI--------KEDVTEELRILQRINHANLVKLMGVS 386
           IG      V  A      + +A+K+I         +++ +E++ + + +H N+V     S
Sbjct: 23  IGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYT-S 81

Query: 387 SDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE 446
              +   +LV +    GS+   +  K   +        L  S    +  +V  GL+Y+H+
Sbjct: 82  FVVKDELWLVMKLLSGGSVLDII--KHIVAKGEHKSGVLDESTIATILREVLEGLEYLHK 139

Query: 447 HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
           +     +HRD++  NI L      +IA+F ++A
Sbjct: 140 N---GQIHRDVKAGNILLGEDGSVQIADFGVSA 169

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 63.2 bits (153), Expect = 1e-10
 Identities = 35/228 (15%), Positives = 63/228 (27%), Gaps = 74/228 (32%)

Query: 345 VYRAT--IDGKVLAVKKIK----------EDVTEELRILQR------------------- 373
              AT    G+   V              + + EE+  L+                    
Sbjct: 94  YLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFP 153

Query: 374 ---INHANLVKLMGVSSDSQG----NRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLT 426
              +      K++ V  D +     +RF +Y   +  +L  +       SS+  S   L 
Sbjct: 154 FDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQ-SNLQTFGEVLLSHSSTHKS---LV 209

Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA----- 481
              RL++ L V   L  +H +    +VH  +R  +I LD R    +  F           
Sbjct: 210 HHARLQLTLQVIRLLASLHHY---GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGASAV 266

Query: 482 ------------------------TNDVMPKFDVFAFGVVLLELLSGK 505
                                      +   FD +  G+ +  +    
Sbjct: 267 SPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCAD 314

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 29/203 (14%), Positives = 68/203 (33%), Gaps = 51/203 (25%)

Query: 358 KKIKEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSS 417
               +  + ++R +   +  N V  +   S  +   ++  +     +L  W++ +     
Sbjct: 102 PSPMDAPSVKIRRMDPFSTKNTVGQL-QPSSPKVYLYIQMQLCRKENLKDWMNRRCSLED 160

Query: 418 SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSL 477
               V        L + + +A  ++++H      ++HRD++ +NI        K+ +F L
Sbjct: 161 REHGVC-------LHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGL 210

Query: 478 AAPATNDVMP-----------------------------------KFDVFAFGVVLLELL 502
                 D                                      K D+F+ G++L ELL
Sbjct: 211 VTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELL 270

Query: 503 SGKKATRTTENGKTAVLWKEIRE 525
                   T+  +  ++  ++R 
Sbjct: 271 YSFS----TQMERVRII-TDVRN 288

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 44/213 (20%), Positives = 74/213 (34%), Gaps = 55/213 (25%)

Query: 333 MNLSEHYSIGKS--------VYRAT--IDGKVLAVK------KIKEDVTEELRILQRINH 376
           M+ S+ Y   K                +  +++AVK       I E+V  E+   + + H
Sbjct: 16  MHDSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRH 75

Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALD 436
            N+V+   V   +  +  ++ EYA  G L + +    + S       F    Q+L     
Sbjct: 76  PNIVRFKEVI-LTPTHLAIIMEYASGGELYERICNAGRFSEDEARFFF----QQL----- 125

Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA--KIANFSLAAPATNDVM-------- 486
             +G+ Y H      I HRD++  N  LD       KI +F  +  +             
Sbjct: 126 -LSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTP 181

Query: 487 ---------------PKFDVFAFGVVLLELLSG 504
                             DV++ GV L  +L G
Sbjct: 182 AYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVG 214

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 30/155 (19%)

Query: 341 IGK----SVYRA--TIDGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMG 384
           IG     +VY A    + +V+A+KK+           +D+ +E+R LQ++ H N ++  G
Sbjct: 62  IGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRG 121

Query: 385 VSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYM 444
                +   +LV EY    + D     K        + +          AL    GL Y+
Sbjct: 122 -CYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAV-------THGAL---QGLAYL 170

Query: 445 HEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
           H H   +++HRD++  NI L      K+ +F  A+
Sbjct: 171 HSH---NMIHRDVKAGNILLSEPGLVKLGDFGSAS 202

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 62/224 (27%)

Query: 328 IMESTMNLSEHYS----IGKSVY------RATIDGKVLAVKKIK---EDVTE------EL 368
           + +ST  + + Y     IG             +  + +A+KK+    ++ T       EL
Sbjct: 53  VGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYREL 112

Query: 369 RILQRINHANLVKLMGV-----SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVI 423
            +++ +NH N++ L+ V     + +   + +LV E  +    +  L    +       + 
Sbjct: 113 VLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDA---N--LCQVIQMELDHERMS 167

Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN 483
           +L + Q L        G++++H      I+HRD++ +NI + S    KI +F LA  A  
Sbjct: 168 YLLY-QMLC-------GIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT 216

Query: 484 DVM----------------------PKFDVFAFGVVLLELLSGK 505
             M                         D+++ G ++ E++  K
Sbjct: 217 SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 260

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 40/220 (18%), Positives = 78/220 (35%), Gaps = 44/220 (20%)

Query: 318 GKPIVYEIEVIMESTMNLSEHYS----IGK----SVYRA--TIDGKVLAVKKIK---EDV 364
           G+  +Y         +++ ++Y     IG+     VY A      K +A+KK+    ED+
Sbjct: 10  GRENLYFQG---IKNVHVPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDL 66

Query: 365 TE------ELRILQRINHANLVKLMGVSSDSQGNRF----LVYEYAENGSLDKWLHP--K 412
            +      E+ IL R+    +++L  +       +F    +V E       D  L    K
Sbjct: 67  IDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDELYIVLEI-----ADSDLKKLFK 121

Query: 413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI 472
           +    +   +  + +   L        G  ++HE     I+HRD++  N  L+     K+
Sbjct: 122 TPIFLTEEHIKTILY-NLLL-------GENFIHE---SGIIHRDLKPANCLLNQDCSVKV 170

Query: 473 ANFSLAAPATNDVMPKFDVFAFGVVLLELLSGKKATRTTE 512
            +F LA    ++                  +     + T 
Sbjct: 171 CDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTS 210

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 62/224 (27%)

Query: 328 IMESTMNLSEHYS----IGKSVY---RATID---GKVLAVKKIK---EDVTE------EL 368
           + ++   +   Y     +G   Y    + +D   G  +A+KK+    +          EL
Sbjct: 16  VTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYREL 75

Query: 369 RILQRINHANLVKLMGV-----SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSS-SSGSV 422
           R+L+ + H N++ L+ V     + D   + +LV  +      D  L    K        +
Sbjct: 76  RLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGT---D--LGKLMKHEKLGEDRI 130

Query: 423 IFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT 482
            FL + Q L+       GL+Y+H      I+HRD++  N+ ++   + KI +F LA  A 
Sbjct: 131 QFLVY-QMLK-------GLRYIHA---AGIIHRDLKPGNLAVNEDCELKILDFGLARQAD 179

Query: 483 ND--------------VM-------PKFDVFAFGVVLLELLSGK 505
           ++              V+          D+++ G ++ E+++GK
Sbjct: 180 SEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGK 223

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 40/182 (21%), Positives = 79/182 (43%), Gaps = 39/182 (21%)

Query: 326 EVIMESTMNLSEHYS----IGKSVYRA------TIDGKVLAVKKIK--EDVTE------E 367
           E++     ++   Y+    IG+  Y         ++   +A+KKI   E  T       E
Sbjct: 16  EMVRGQVFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLRE 75

Query: 368 LRILQRINHANLVKLMGVSSDSQGNRF----LVYEYAENGSLDKWLHPKSKSSS-SSGSV 422
           ++IL R  H N++ +  +       +     +V +      ++  L+   K+   S+  +
Sbjct: 76  IKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDL-----METDLYKLLKTQHLSNDHI 130

Query: 423 IFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT 482
            +  + Q LR       GL+Y+H     +++HRD++ +N+ L++    KI +F LA  A 
Sbjct: 131 CYFLY-QILR-------GLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVAD 179

Query: 483 ND 484
            D
Sbjct: 180 PD 181

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 4e-10
 Identities = 76/545 (13%), Positives = 155/545 (28%), Gaps = 144/545 (26%)

Query: 12  FLLMTIHITAQSPAANGTDFSCSADSLPSCKTYVAYFAQSPEFLDLSNISDLFGVSRLS- 70
           FL+  I    + P+     +    D L         +  +  F   +       VSRL  
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRL---------YNDNQVFAKYN-------VSRLQP 136

Query: 71  IARASNLVSEDTPLVPKQLLLVPIICGCTGNQYFANITYQIKK------GDSYYLVSITS 124
             +    + E   L P + +L+  + G  G  + A       K         ++L    +
Sbjct: 137 YLKLRQALLE---LRPAKNVLIDGVLGS-GKTWVALDVCLSYKVQCKMDFKIFWL----N 188

Query: 125 FENLTNWHAVLEMNPGINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLITYVWQPG--- 181
            +N  +   VLEM   +   L QI    T         K  +      L   +       
Sbjct: 189 LKNCNSPETVLEM---LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 182 -----DDV---------------------SQVGAKLNASSAA-IETENEYRNFSEAVSLP 214
                 +V                      QV   L+A++   I  ++     +      
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 215 VL-----IPVSQLPSLSQSYPSTKRNGSKHHLTLIIPISAGGALLILLVAALVI------ 263
           +L          LP    +                 P        + ++A  +       
Sbjct: 306 LLLKYLDCRPQDLPREVLT---------------TNP------RRLSIIAESIRDGLATW 344

Query: 264 --YNHHLQRKRVRILNRNGSSLESADLIPMKENSKSDRFEPKLA---QNKLLP-GVSGYL 317
             + H    K   I+  + + LE A+            F+ +L+    +  +P  +   +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEY--------RKMFD-RLSVFPPSAHIPTILLSLI 395

Query: 318 -GKPIVYEIEVIMESTMNLSEHYSIGKSVYRATI---DGKVLAVKKIKEDVTEELRILQR 373
               I  ++ V++      S    + K    +TI      +    K++ +      I+  
Sbjct: 396 WFDVIKSDVMVVVNKLHKYS---LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

Query: 374 INHANLVKLMGVSSDSQGN---RFLVY-----EYAENGS------LD-KWLHPKSKSSSS 418
            N         +            + +     E+ E  +      LD ++L  K +  S+
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512

Query: 419 SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
           +       W+    + L+    L++   +   +    +   N I     F  KI    + 
Sbjct: 513 A-------WNASGSI-LNTLQQLKFYKPYICDNDPKYERLVNAIL---DFLPKIEENLIC 561

Query: 479 APATN 483
           +  T+
Sbjct: 562 SKYTD 566

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 64/374 (17%), Positives = 112/374 (29%), Gaps = 94/374 (25%)

Query: 287 DLIPMKENSKSDRF-EPKLAQNKLLPGVSGYLGKPIVYEIEVIMESTMNLSEHYSIGKSV 345
             +  K+     +F E  L  N        +L  PI  E     + +M    +      +
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRIN------YKFLMSPIKTEQR---QPSMMTRMYIEQRDRL 119

Query: 346 YRATIDGKVLAVKKIKEDVT-----EELRI-LQRINHANLVKL--MGVSSDSQGNRFLVY 397
           Y    D +V A    K +V+      +LR  L  +  A  V +  +  S    G  ++  
Sbjct: 120 YN---DNQVFA----KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS----GKTWVAL 168

Query: 398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI 457
           +   +  +   +            + +L           +   LQ +     P+   R  
Sbjct: 169 DVCLSYKVQCKM---------DFKIFWLNLKNCNSPETVLEM-LQKLLYQIDPNWTSRSD 218

Query: 458 RTNNIQLDSR-FKAKIANFSLAAPATN------DVMPK--FDVFAFGV-VLL-------- 499
            ++NI+L     +A++     + P  N      +V     ++ F     +LL        
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278

Query: 500 ELLSGKKATR----------TTENGKT---AVLWKEI----REVLKV---------EEKR 533
           + LS    T           T +  K+     L        REVL           E  R
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338

Query: 534 EERLR--NWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAE-VVFNLSVLTQSTE 590
           +      NW   N +    I    SL  L      + +  R       VF  S     T 
Sbjct: 339 DGLATWDNWKHVNCDKLTTII-ESSLNVL------EPAEYRKMFDRLSVFPPSAHI-PTI 390

Query: 591 TLERSWTSGLEAEE 604
            L   W   ++++ 
Sbjct: 391 LLSLIWFDVIKSDV 404

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 8e-07
 Identities = 68/433 (15%), Positives = 134/433 (30%), Gaps = 112/433 (25%)

Query: 8   LQALFLLMTIHITAQSPAANGTDFSCSA-DSLPSCKTYVAYFAQSPEF----LDLSNISD 62
           LQ L   +  + T++S      D S +    + S +  +    +S  +    L L N+ +
Sbjct: 202 LQKLLYQIDPNWTSRS------DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 63  L-----FGVS-R-LSIARASNLVSEDTPLVPKQLLLVPIICGCTGNQ---YFANIT---- 108
                 F +S + L   R   +    +      + L       T ++             
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 109 ----YQIKKGDSYYLVSI--TSFEN----LTNW--------HAVLEMN-PGINPNLLQ-- 147
                ++    +   +SI   S  +      NW          ++E +   + P   +  
Sbjct: 316 QDLPREVLTT-NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 148 ---IGVKVTFPLFCKCPSKTNMEDGIENLITYVWQ--PGDDVSQVGAKLNASSAAIETEN 202
              + V   FP     P+           ++ +W      DV  V  KL+  S   +   
Sbjct: 375 FDRLSV---FPPSAHIPTIL---------LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 203 EYRNFSEAVSLPVLIPVSQLPSLSQSYPSTKRNGSKHHLTLI----IPISAGGALLILLV 258
           E                  +PS+         N    H +++    IP +     LI   
Sbjct: 423 EST--------------ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 259 AALVIYNH---HLQRKRVRILNRNGSSLESADLIPMKENSKSD-RF-EPKLAQNKLLPGV 313
                Y+H   HL             ++E  + + +      D RF E K+  +      
Sbjct: 469 LDQYFYSHIGHHL------------KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516

Query: 314 SGYLG---------KPIVYEIEVIMESTMNLSEHY--SIGKSVYRATIDGKV-LAVKKIK 361
           SG +          KP + + +   E  +N    +   I +++  +     + +A+    
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576

Query: 362 EDVTEE-LRILQR 373
           E + EE  + +QR
Sbjct: 577 EAIFEEAHKQVQR 589

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 60.5 bits (147), Expect = 7e-10
 Identities = 33/221 (14%), Positives = 77/221 (34%), Gaps = 56/221 (25%)

Query: 327 VIMESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKI--KEDVTEELRILQRI 374
           + ++    + ++    +         V +       +  A+K +        E+ +  R 
Sbjct: 52  LQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRA 111

Query: 375 -NHANLVKLMGVSSDSQGNR---FLVYEYAENGSL-DKWLHPKSKS-SSSSGSVIFLTWS 428
               ++V+++ V  +    R    +V E  + G L  +      ++ +    S I  +  
Sbjct: 112 SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKS-- 169

Query: 429 QRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKA---KIANFSLAAPAT-ND 484
                   +   +QY+H     +I HRD++  N+   S+      K+ +F  A   T ++
Sbjct: 170 --------IGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHN 218

Query: 485 VM---------------------PKFDVFAFGVVLLELLSG 504
            +                        D+++ GV++  LL G
Sbjct: 219 SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 259

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 60.0 bits (146), Expect = 7e-10
 Identities = 33/208 (15%), Positives = 73/208 (35%), Gaps = 64/208 (30%)

Query: 345 VYRATI--DGKVLAVKKIKEDVT------EELRILQRINHANLVKLMGVSSDSQGNRF-- 394
           V        G  +A+KK+ +D        + ++ L  ++H N+V+L              
Sbjct: 39  VQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRD 98

Query: 395 ----LVYEYAENGSLDKWLHPKSKSSSSSGSVI------FLTWSQRLRVALDVANGLQYM 444
               +V EY     +   LH   ++                 + Q +R        +  +
Sbjct: 99  IYLNVVMEY-----VPDTLHRCCRNYYRRQVAPPPILIKVFLF-QLIR-------SIGCL 145

Query: 445 HEHAQPSIVHRDIRTNNIQLD-SRFKAKIANFSLA-------------------APATND 484
           H  +  ++ HRDI+ +N+ ++ +    K+ +F  A                   AP   +
Sbjct: 146 HLPSV-NVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPNVAYICSRYYRAP---E 201

Query: 485 VM-------PKFDVFAFGVVLLELLSGK 505
           ++          D+++ G +  E++ G+
Sbjct: 202 LIFGNQHYTTAVDIWSVGCIFAEMMLGE 229

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 59.7 bits (145), Expect = 9e-10
 Identities = 51/229 (22%), Positives = 95/229 (41%), Gaps = 62/229 (27%)

Query: 323 YEIEVIMESTMNLSEHYS----IGKSVY------RATIDGKVLAVKKIK---EDVTE--- 366
           +  + + ++   + E Y     +G   Y        T  G  +AVKK+    + +     
Sbjct: 15  FYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKR 74

Query: 367 ---ELRILQRINHANLVKLMGV-----SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSS- 417
              ELR+L+ + H N++ L+ V     S +   + +LV         D  L+   K    
Sbjct: 75  TYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGA---D--LNNIVKCQKL 129

Query: 418 SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSL 477
           +   V FL + Q LR       GL+Y+H      I+HRD++ +N+ ++   + KI +F L
Sbjct: 130 TDDHVQFLIY-QILR-------GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGL 178

Query: 478 AAPATND--------------VM-------PKFDVFAFGVVLLELLSGK 505
           A    ++              +M          D+++ G ++ ELL+G+
Sbjct: 179 ARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 227

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 37/221 (16%), Positives = 79/221 (35%), Gaps = 63/221 (28%)

Query: 334 NLSEHYSIGK--------SVYRAT--IDGKVLAVKKI-KEDVTE------------ELRI 370
            L   Y +G         SVY      D   +A+K + K+ +++            E+ +
Sbjct: 40  PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVL 99

Query: 371 LQRINHA--NLVKLMGVSSDSQGNRFLVYEYAEN-GSLDKWLHPKSKSSSSSGSVIFLTW 427
           L++++     +++L+    +   +  L+ E  E    L  ++  +           F   
Sbjct: 100 LKKVSSGFSGVIRLLDWF-ERPDSFVLILERPEPVQDLFDFITERGALQEELARSFF--- 155

Query: 428 SQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS-RFKAKIANFSLAAPATNDVM 486
            Q       V   +++ H      ++HRDI+  NI +D  R + K+ +F   A   + V 
Sbjct: 156 WQ-------VLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVY 205

Query: 487 ----------------------PKFDVFAFGVVLLELLSGK 505
                                     V++ G++L +++ G 
Sbjct: 206 TDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGD 246

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 48/208 (23%), Positives = 84/208 (40%), Gaps = 54/208 (25%)

Query: 341 IGK----SVYRA--TIDGKVLAVKKIKEDVTE--------ELRILQR-INHANLVKLMGV 385
           IG+    SV +      G+++AVK+I+  V E        +L ++ R  +   +V+  G 
Sbjct: 30  IGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYG- 88

Query: 386 SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMH 445
           +   +G+ ++  E   + S DK+                L      ++ L     L ++ 
Sbjct: 89  ALFREGDCWICMELM-STSFDKFYKYVYSVLDDVIPEEILG-----KITLATVKALNHLK 142

Query: 446 EHAQPSIVHRDIRTNNIQLDSRFKAKIANF--------SLAAPATNDV-----M-P---- 487
           E     I+HRDI+ +NI LD     K+ +F        S+A   T D      M P    
Sbjct: 143 E--NLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIA--KTRDAGCRPYMAPERID 198

Query: 488 ----------KFDVFAFGVVLLELLSGK 505
                     + DV++ G+ L EL +G+
Sbjct: 199 PSASRQGYDVRSDVWSLGITLYELATGR 226

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 42/211 (19%), Positives = 88/211 (41%), Gaps = 61/211 (28%)

Query: 341 IGK----SVYRA--TIDGKVLAVKKIKEDVTE--------ELRILQR-INHANLVKLMGV 385
           +G+     V +      G+++AVK+I+  V          +L I  R ++    V   G 
Sbjct: 15  LGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYG- 73

Query: 386 SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVI---FLTWSQRLRVALDVANGLQ 442
           +   +G+ ++  E   + SLDK+     K     G  I    L      ++A+ +   L+
Sbjct: 74  ALFREGDVWICMELM-DTSLDKFY----KQVIDKGQTIPEDILG-----KIAVSIVKALE 123

Query: 443 YMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF--------SLA-----------AP--- 480
           ++H   + S++HRD++ +N+ +++  + K+ +F         +A           AP   
Sbjct: 124 HLHS--KLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDIDAGCKPYMAPERI 181

Query: 481 ------ATNDVMPKFDVFAFGVVLLELLSGK 505
                     V  K D+++ G+ ++EL   +
Sbjct: 182 NPELNQKGYSV--KSDIWSLGITMIELAILR 210

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 40/235 (17%), Positives = 74/235 (31%), Gaps = 73/235 (31%)

Query: 328 IMESTMNLSEHYS----IGK----SVYRAT-IDGKVLAVKKIKEDVTE------------ 366
           ++     +   Y+    I      +V      +G  +A+K++   V++            
Sbjct: 13  LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFL 72

Query: 367 ------ELRILQRINHANLVKLMGVSSDSQGNRF----LVYEYAENGSLDKWLHPKSKSS 416
                 E+R+L   +H N++ L  +    +        LV E       D  L       
Sbjct: 73  CKRVLREIRLLNHFHHPNILGLRDIFVHFEEPAMHKLYLVTELMRT---D--LAQVIHDQ 127

Query: 417 SSSGS---VIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIA 473
               S   + +  +   L        GL  +HE     +VHRD+   NI L       I 
Sbjct: 128 RIVISPQHIQYFMY-HILL-------GLHVLHE---AGVVHRDLHPGNILLADNNDITIC 176

Query: 474 NFSLA-APATNDVM----------------------PKFDVFAFGVVLLELLSGK 505
           +F+LA     +                            D+++ G V+ E+ + K
Sbjct: 177 DFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRK 231

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 40/218 (18%), Positives = 74/218 (33%), Gaps = 65/218 (29%)

Query: 338 HYSIGK--------SVYRAT--IDGKVLAVKKI-KEDVTE------------ELRILQRI 374
            Y +G         +V+      D   +A+K I +  V              E+ +L ++
Sbjct: 32  EYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKV 91

Query: 375 N----HANLVKLMGVSSDSQGNRFLVYEYAENGS-LDKWLHPKSKSSSSSGSVIFLTWSQ 429
                H  +++L+    ++Q    LV E       L  ++  K           F    Q
Sbjct: 92  GAGGGHPGVIRLLDWF-ETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFF---GQ 147

Query: 430 RLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS-RFKAKIANFSLAAPATNDVM-- 486
                  V   +Q+ H      +VHRDI+  NI +D  R  AK+ +F   A   ++    
Sbjct: 148 -------VVAAIQHCHSR---GVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTD 197

Query: 487 --------------------PKFDVFAFGVVLLELLSG 504
                                   V++ G++L +++ G
Sbjct: 198 FDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCG 235

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 27/143 (18%), Positives = 59/143 (41%), Gaps = 25/143 (17%)

Query: 345 VYRA--TIDGKVLAVKKIKEDVTE----ELRILQRI-NHANLVKLMGV-SSDSQGNRFLV 396
           V+ A    + + + VK +K    +    E++IL+ +    N++ L  +          LV
Sbjct: 52  VFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV 111

Query: 397 YEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD 456
           +E+  N    +     +        + F  + + L+        L Y H      I+HRD
Sbjct: 112 FEHVNNTDFKQLYQTLTDYD-----IRFYMY-EILK-------ALDYCHSM---GIMHRD 155

Query: 457 IRTNNIQLDSRFKA-KIANFSLA 478
           ++ +N+ +D   +  ++ ++ LA
Sbjct: 156 VKPHNVMIDHEHRKLRLIDWGLA 178

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 37/209 (17%), Positives = 80/209 (38%), Gaps = 59/209 (28%)

Query: 341 IGK----SVYRA--TIDGKVLAVKKIKEDVTE--------ELRILQR-INHANLVKLMGV 385
           +G      V++      G V+AVK+++    +        +L ++ +  +   +V+  G 
Sbjct: 33  MGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFG- 91

Query: 386 SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMH 445
           +  +  + F+  E       +K                 +      ++ + +   L Y+ 
Sbjct: 92  TFITNTDVFIAMELM-GTCAEKLKKRMQGP---------IPERILGKMTVAIVKALYYLK 141

Query: 446 EHAQPSIVHRDIRTNNIQLDSRFKAKIANF--------SLA-----------AP------ 480
           E  +  ++HRD++ +NI LD R + K+ +F          A           AP      
Sbjct: 142 E--KHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPP 199

Query: 481 ----ATNDVMPKFDVFAFGVVLLELLSGK 505
                  D+  + DV++ G+ L+EL +G+
Sbjct: 200 DPTKPDYDI--RADVWSLGISLVELATGQ 226

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 34/168 (20%), Positives = 72/168 (42%), Gaps = 39/168 (23%)

Query: 334 NLSEHYS----IGK----SVYRA--TIDGKVLAVKKIK--EDVTE------ELRILQRIN 375
           N+S  +     +G+     V  A     G+++A+KKI+  +          E++IL+   
Sbjct: 8   NISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFK 67

Query: 376 HANLVKLMGVSSDSQGNRF----LVYEYAENGSLDKWLHPKSKSSS-SSGSVIFLTWSQR 430
           H N++ +  +        F    ++ E  +    D  LH    +   S   + +  + Q 
Sbjct: 68  HENIITIFNIQRPDSFENFNEVYIIQELMQT---D--LHRVISTQMLSDDHIQYFIY-QT 121

Query: 431 LRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
           LR        ++ +H     +++HRD++ +N+ ++S    K+ +F LA
Sbjct: 122 LR-------AVKVLHG---SNVIHRDLKPSNLLINSNCDLKVCDFGLA 159

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 27/151 (17%)

Query: 340 SIGKSVYRAT--IDGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSS 387
           S    V  A      +  A+K ++            VT E  ++ R++H   VKL     
Sbjct: 42  SFST-VVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQ 100

Query: 388 DSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH 447
           D +   +    YA+NG L K++  K  S        F     R   A ++ + L+Y+H  
Sbjct: 101 DDE-KLYFGLSYAKNGELLKYIR-KIGS--------FDETCTRFYTA-EIVSALEYLHGK 149

Query: 448 AQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
               I+HRD++  NI L+     +I +F  A
Sbjct: 150 ---GIIHRDLKPENILLNEDMHIQITDFGTA 177

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 46/192 (23%)

Query: 346 YRATIDGKVLAVKKIKEDV----------TEELRILQRINHANLVKLMGVSSDSQGNRFL 395
            RAT  GK+ A KK+++              E +IL+++N   +V L   + +++    L
Sbjct: 205 VRAT--GKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAY-AYETKDALCL 261

Query: 396 VYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHR 455
           V      G L   ++   ++       +F         A ++  GL+ +H      IV+R
Sbjct: 262 VLTLMNGGDLKFHIYHMGQAGFPEARAVFY--------AAEICCGLEDLHRE---RIVYR 310

Query: 456 DIRTNNIQLDSRFKAKIANFSLAAPATNDVM-------PKF---------------DVFA 493
           D++  NI LD     +I++  LA                 +               D +A
Sbjct: 311 DLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWA 370

Query: 494 FGVVLLELLSGK 505
            G +L E+++G+
Sbjct: 371 LGCLLYEMIAGQ 382

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 24/138 (17%)

Query: 351 DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYA 400
             K+ A+K +            +V +EL+I+Q + H  LV L   S   + + F+V +  
Sbjct: 39  TKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWY-SFQDEEDMFMVVDLL 97

Query: 401 ENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTN 460
             G L   L           +V F   + +L +  ++   L Y+       I+HRD++ +
Sbjct: 98  LGGDLRYHL---------QQNVHFKEETVKLFIC-ELVMALDYLQNQ---RIIHRDMKPD 144

Query: 461 NIQLDSRFKAKIANFSLA 478
           NI LD      I +F++A
Sbjct: 145 NILLDEHGHVHITDFNIA 162

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 37/194 (19%), Positives = 76/194 (39%), Gaps = 47/194 (24%)

Query: 346 YRATIDGKVLAVKKIKEDV----------TEELRILQRINHANLVKLMGVSSDSQGNRFL 395
            +AT  GK+ A KK+ +              E +IL +++   +V L   + +++ +  L
Sbjct: 206 MKAT--GKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAY-AFETKTDLCL 262

Query: 396 VYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRV-ALDVANGLQYMHEHAQPSIVH 454
           V      G +   ++   + +       F     R       + +GL+++H+    +I++
Sbjct: 263 VMTIMNGGDIRYHIYNVDEDNP-----GFQE--PRAIFYTAQIVSGLEHLHQR---NIIY 312

Query: 455 RDIRTNNIQLDSRFKAKIANFSLA--APATNDVMPKF---------------------DV 491
           RD++  N+ LD     +I++  LA    A       +                     D 
Sbjct: 313 RDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDY 372

Query: 492 FAFGVVLLELLSGK 505
           FA GV L E+++ +
Sbjct: 373 FALGVTLYEMIAAR 386

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 41/171 (23%), Positives = 84/171 (49%), Gaps = 38/171 (22%)

Query: 330 ESTMNLSEHYS----IGK----SVYRA--TIDGKVLAVKKIK---EDVTE------ELRI 370
               ++   Y     +GK     V+++     G+V+AVKKI    ++ T+      E+ I
Sbjct: 2   RVDRHVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMI 61

Query: 371 LQRIN-HANLVKLMGV-SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSS-SSGSVIFLTW 427
           L  ++ H N+V L+ V  +D+  + +LV++Y E    D  LH   +++        ++ +
Sbjct: 62  LTELSGHENIVNLLNVLRADNDRDVYLVFDYMET---D--LHAVIRANILEPVHKQYVVY 116

Query: 428 SQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
            Q ++        ++Y+H      ++HRD++ +NI L++    K+A+F L+
Sbjct: 117 -QLIK-------VIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLS 156

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 36/193 (18%), Positives = 61/193 (31%), Gaps = 52/193 (26%)

Query: 351 DGKVLAVKKIKEDVT----------EELRILQRINHANLVKLMGVSSDSQGNRFLVYEYA 400
             KV A+K + +             EE  +L   +   +  L   +     N +LV +Y 
Sbjct: 98  ADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHY-AFQDDNNLYLVMDYY 156

Query: 401 ENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTN 460
             G L   L        S           R  +A ++   +  +H+      VHRDI+ +
Sbjct: 157 VGGDLLTLL--------SKFEDRLPEEMARFYLA-EMVIAIDSVHQL---HYVHRDIKPD 204

Query: 461 NIQLDSRFKAKIANFSLAAPATNDVMPKFDVF---------------------------- 492
           NI +D     ++A+F        D   +  V                             
Sbjct: 205 NILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDW 264

Query: 493 -AFGVVLLELLSG 504
            + GV + E+L G
Sbjct: 265 WSLGVCMYEMLYG 277

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 40/177 (22%), Positives = 69/177 (38%), Gaps = 48/177 (27%)

Query: 334 NLSEHYS----IGK----SVYRA--TIDGKVLAVKKIK-EDVTE------ELRILQRINH 376
           +L   Y     +G      V+ A      K +A+KKI   D         E++I++R++H
Sbjct: 8   DLGSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDH 67

Query: 377 ANLVKLMGV---------SSDSQGNRF----LVYEYAENGSLDKWLHPKSKSSS-SSGSV 422
            N+VK+  +                      +V EY E    D  L    +         
Sbjct: 68  DNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYMET---D--LANVLEQGPLLEEHA 122

Query: 423 IFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF-KAKIANFSLA 478
               + Q LR       GL+Y+H     +++HRD++  N+ +++     KI +F LA
Sbjct: 123 RLFMY-QLLR-------GLKYIH---SANVLHRDLKPANLFINTEDLVLKIGDFGLA 168

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 38/220 (17%), Positives = 73/220 (33%), Gaps = 62/220 (28%)

Query: 345 VYRA--TIDGKVLAVKKIKEDVTE---ELRILQRINHANLVKLMGV-----SSDSQGNRF 394
           V        GK  A+KK+ +D      EL I++ ++H N++KL+         + +  + 
Sbjct: 23  VCEVFDIESGKRFALKKVLQDPRYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQP 82

Query: 395 LVYEYAENGSLDKWLHPKSKSSSSSGSVIFL---------TWSQRLRVALDVAN------ 439
                   G  +   +       +     +L         T  + L+  +          
Sbjct: 83  PDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNL 142

Query: 440 ----------GLQYMHEHAQPSIVHRDIRTNNIQLDSR-FKAKIANFSLAAPATND---- 484
                      + ++H      I HRDI+  N+ ++S+    K+ +F  A          
Sbjct: 143 ISIYIYQLFRAVGFIHSL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSV 199

Query: 485 ------------VM-------PKFDVFAFGVVLLELLSGK 505
                       +M       P  D+++ G V  EL+ GK
Sbjct: 200 AYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGK 239

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 23/138 (16%)

Query: 351 DGKVLAVKKIKEDVT----------EELRILQRINHANLVKLMGVSSDSQGNRFLVYEYA 400
            G+  A+K +K++V            E R+LQ   H  L  L   S  +      V EYA
Sbjct: 172 TGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKY-SFQTHDRLCFVMEYA 230

Query: 401 ENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTN 460
             G L   L  +           F     R   A ++ + L Y+H  ++ ++V+RD++  
Sbjct: 231 NGGELFFHLSRERV---------FSEDRARFYGA-EIVSALDYLH--SEKNVVYRDLKLE 278

Query: 461 NIQLDSRFKAKIANFSLA 478
           N+ LD     KI +F L 
Sbjct: 279 NLMLDKDGHIKITDFGLC 296

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 48.0 bits (114), Expect = 9e-06
 Identities = 41/226 (18%), Positives = 73/226 (32%), Gaps = 51/226 (22%)

Query: 353 KVLAVKKIKEDVTEEL-----RILQRINHAN---LVKLMGVSSDSQGNRFLVYEYAENGS 404
           K L  K+IK    E L      +L  ++  +   +V +   +  +      + +    G 
Sbjct: 220 KCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSY-AFHTPDKLSFILDLMNGGD 278

Query: 405 LDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL 464
           L    H       S   + F         A ++  GL++MH      +V+RD++  NI L
Sbjct: 279 L--HYHLSQHGVFSEADMRFY--------AAEIILGLEHMHNR---FVVYRDLKPANILL 325

Query: 465 DSRFKAKIANFSLAAPATNDVMPKF----------------------DVFAFGVVLLELL 502
           D     +I++  LA   +                             D F+ G +L +LL
Sbjct: 326 DEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLL 385

Query: 503 SGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF 548
            G    R  +      + +    +          L +   P L S 
Sbjct: 386 RGHSPFRQHKTKDKHEIDRMTLTM-------AVELPDSFSPELRSL 424

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 28/145 (19%), Positives = 45/145 (31%), Gaps = 41/145 (28%)

Query: 352 GKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAE 401
            KV A+K +               EE  I+   N   +V+L   +       ++V EY  
Sbjct: 94  RKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFY-AFQDDRYLYMVMEYMP 152

Query: 402 NGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVAN--------GLQYMHEHAQPSIV 453
            G L                   +       V    A          L  +H       +
Sbjct: 153 GGDL-------------------VNLMSNYDVPEKWARFYTAEVVLALDAIHSM---GFI 190

Query: 454 HRDIRTNNIQLDSRFKAKIANFSLA 478
           HRD++ +N+ LD     K+A+F   
Sbjct: 191 HRDVKPDNMLLDKSGHLKLADFGTC 215

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 22/182 (12%), Positives = 43/182 (23%), Gaps = 66/182 (36%)

Query: 345 VYRATIDGKVLAVKKI---------------KEDVTEELRILQRI---------NHANLV 380
           V++   D   +A+K I                E++  E+ I + +              +
Sbjct: 36  VFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFI 95

Query: 381 KLMGV-----------------------------SSDSQGNRFLVYEYAENGSLDKWLHP 411
            L  V                                     F+V E+   G   + +  
Sbjct: 96  GLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT 155

Query: 412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAK 471
           K             + +    +   +   L            HRD+   N+ L      K
Sbjct: 156 K-----------LSSLATAKSILHQLTASLAVAEA--SLRFEHRDLHWGNVLLKKTSLKK 202

Query: 472 IA 473
           + 
Sbjct: 203 LH 204

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 24/138 (17%)

Query: 351 DGKVLAVKKI-KEDVTE---------ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYA 400
            G   A+K + K+ V +         E RILQ +N   LVKL     D+  N ++V EY 
Sbjct: 65  SGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNS-NLYMVMEYV 123

Query: 401 ENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTN 460
             G +  + H +     S     F         A  +    +Y+H      +++RD++  
Sbjct: 124 AGGEM--FSHLRRIGRFSEPHARF--------YAAQIVLTFEYLHSL---DLIYRDLKPE 170

Query: 461 NIQLDSRFKAKIANFSLA 478
           N+ +D +   ++ +F  A
Sbjct: 171 NLLIDQQGYIQVTDFGFA 188

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 34/152 (22%), Positives = 57/152 (37%), Gaps = 23/152 (15%)

Query: 351 DGKVLAVKKIKEDVT----------EELRILQRINHANLVKLMGVSSDSQGNRFLVYEYA 400
            G+V A+K + +             EE  +L   +   + +L   +   +   +LV EY 
Sbjct: 85  TGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHF-AFQDENYLYLVMEYY 143

Query: 401 ENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTN 460
             G L   L       S  G  I    + R  +A ++   +  +H       VHRDI+ +
Sbjct: 144 VGGDLLTLL-------SKFGERIPAEMA-RFYLA-EIVMAIDSVHRL---GYVHRDIKPD 191

Query: 461 NIQLDSRFKAKIANFSLAAPATNDVMPKFDVF 492
           NI LD     ++A+F        D   +  V 
Sbjct: 192 NILLDRCGHIRLADFGSCLKLRADGTVRSLVA 223

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 45.4 bits (107), Expect = 4e-05
 Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 25/138 (18%)

Query: 352 GKVLAVKKIKEDV----------TEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYA 400
            ++ AVK +K+DV            E R+L        L +L      +    + V EY 
Sbjct: 366 DELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHS-CFQTMDRLYFVMEYV 424

Query: 401 ENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTN 460
             G L    H +          +F         A ++A GL ++       I++RD++ +
Sbjct: 425 NGGDL--MYHIQQVGRFKEPHAVFY--------AAEIAIGLFFLQSK---GIIYRDLKLD 471

Query: 461 NIQLDSRFKAKIANFSLA 478
           N+ LDS    KIA+F + 
Sbjct: 472 NVMLDSEGHIKIADFGMC 489

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 24/138 (17%)

Query: 351 DGKVLAVKKI-KEDVTE---------ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYA 400
            G+  A+K + KE +           E R+LQ   H  L  L   +  +      V EYA
Sbjct: 29  TGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKY-AFQTHDRLCFVMEYA 87

Query: 401 ENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTN 460
             G L  + H   +   +     F           ++ + L+Y+H      +V+RDI+  
Sbjct: 88  NGGEL--FFHLSRERVFTEERARFY--------GAEIVSALEYLHSR---DVVYRDIKLE 134

Query: 461 NIQLDSRFKAKIANFSLA 478
           N+ LD     KI +F L 
Sbjct: 135 NLMLDKDGHIKITDFGLC 152

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 24/138 (17%)

Query: 351 DGKVLAVKKI-KEDVTE---------ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYA 400
           +G+  A+K + KE V           E  +L  + H  ++++ G   D+Q   F++ +Y 
Sbjct: 30  NGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQ-QIFMIMDYI 88

Query: 401 ENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTN 460
           E G L   L           S  F     +   A +V   L+Y+H      I++RD++  
Sbjct: 89  EGGELFSLL---------RKSQRFPNPVAKFYAA-EVCLALEYLHSK---DIIYRDLKPE 135

Query: 461 NIQLDSRFKAKIANFSLA 478
           NI LD     KI +F  A
Sbjct: 136 NILLDKNGHIKITDFGFA 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	615
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.98
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.98
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.98
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.98
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.98
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.98
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.98
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.98
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.98
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.98
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.98
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.98
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.98
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.98
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.98
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.98
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.98
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.98
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.98
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.98
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.98
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.98
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.98
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.98
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.98
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.98
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.98
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.98
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.98
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.98
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.98
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.98
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.98
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.98
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.98
3bhy_A	283	Death-associated protein kinase 3; death associate	99.98
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.98
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.97
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.97
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.97
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.97
3uqc_A	286	Probable conserved transmembrane protein; structur	99.97
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.97
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.97
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.97
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.97
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.97
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.97
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.97
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.97
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.97
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.97
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.97
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.97
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.97
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.97
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.97
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.97
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.97
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.97
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.97
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.97
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.97
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.97
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.97
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.97
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.97
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.97
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.97
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.97
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.97
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.97
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.97
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.97
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.97
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.97
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.97
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.97
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.97
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.97
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.97
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.97
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.97
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.97
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.97
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.97
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.97
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.97
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.97
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.97
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.97
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.97
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.97
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.97
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.97
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.97
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.97
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.97
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.97
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.97
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.97
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.97
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.97
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.97
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.97
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.97
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.97
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.96
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.96
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.96
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.96
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.96
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.96
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.95
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.95
4eby_A	212	Chitin elicitor receptor kinase 1; pathogen-associ	99.95
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.94
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.89
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.79
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.73
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.6
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.27
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.94
4eby_A	212	Chitin elicitor receptor kinase 1; pathogen-associ	98.85
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.75
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.71
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.28
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.02
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	97.98
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	97.98
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	97.83
2l9y_A	167	CVNH-LYSM lectin; carbohydrate, sugar binding prot	97.47
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.46
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.45
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.15
2l9y_A	167	CVNH-LYSM lectin; carbohydrate, sugar binding prot	97.03
1e0g_A	48	Membrane-bound lytic murein transglycosylase D; ce	96.87
2djp_A	77	Hypothetical protein SB145; LYSM, structural genom	96.86
2djp_A	77	Hypothetical protein SB145; LYSM, structural genom	96.75
1e0g_A	48	Membrane-bound lytic murein transglycosylase D; ce	96.72
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	95.99
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	95.97
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	95.81
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	95.72
2gu1_A	361	Zinc peptidase; alpha/beta, beta barrel, structura	95.49
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	94.59
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	94.5
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	94.5
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	94.41
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	94.3
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	94.19
2gu1_A	361	Zinc peptidase; alpha/beta, beta barrel, structura	94.08
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	93.67
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	93.21
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	93.19
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	93.1
4a1k_A	165	Putative L, D-transpeptidase YKUD; transferase, pe	92.29
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	90.89
4a1k_A	165	Putative L, D-transpeptidase YKUD; transferase, pe	90.86
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	90.46
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	90.2
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	86.49
4ann_A	215	ESSB; membrane protein, membrane secretion, ESS ty	83.48

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.6e-46  Score=388.44  Aligned_cols=232  Identities=23%  Similarity=0.375  Sum_probs=182.5

Q ss_pred             HHHccccccccccc--ceEEEEEE-------CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCC
Q 047629          329 MESTMNLSEHYSIG--KSVYRATI-------DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQG  391 (615)
Q Consensus       329 ~~at~~~~~~~~iG--~~Vy~~~~-------~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~  391 (615)
                      ..++..|.+..+-|  |.||+|.+       +++.||||+++        ++|.+|+.+|++++|||||+++|+|.+. +
T Consensus        24 ~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~-~  102 (308)
T 4gt4_A           24 SLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKD-Q  102 (308)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSS-S
T ss_pred             CHHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEEC-C
Confidence            33455666666666  69999997       35789999985        4689999999999999999999999754 4


Q ss_pred             cEEEEEeecCCCCHHHhhccCCCCCCC------CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeC
Q 047629          392 NRFLVYEYAENGSLDKWLHPKSKSSSS------SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD  465 (615)
Q Consensus       392 ~~~lV~E~~~~GsL~~~L~~~~~~~~~------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld  465 (615)
                      ..+||||||++|+|.++|+........      ......|+|.++++|+.|||.||+|||+++   ||||||||+||||+
T Consensus       103 ~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~  179 (308)
T 4gt4_A          103 PLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVY  179 (308)
T ss_dssp             SCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEC
T ss_pred             EEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC---CCCCCccccceEEC
Confidence            789999999999999999764321100      001134999999999999999999999998   99999999999999


Q ss_pred             CCCcEEEeecCCCCCCC-------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHH
Q 047629          466 SRFKAKIANFSLAAPAT-------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVL  519 (615)
Q Consensus       466 ~~~~~kl~DFGla~~~~-------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l  519 (615)
                      +++.+||+|||+|+...                         ..++.++|||||||+||||+| |+.||......+   +
T Consensus       180 ~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~---~  256 (308)
T 4gt4_A          180 DKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQD---V  256 (308)
T ss_dssp             GGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHH---H
T ss_pred             CCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHH---H
Confidence            99999999999987431                         125678999999999999999 899997644211   1


Q ss_pred             HHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          520 WKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      .    .          .+..    ......|.+++..+.+|+.+||+.||++||||+||++.|+..
T Consensus       257 ~----~----------~i~~----~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~  304 (308)
T 4gt4_A          257 V----E----------MIRN----RQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW  304 (308)
T ss_dssp             H----H----------HHHT----TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred             H----H----------HHHc----CCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence            1    0          1111    111123556667789999999999999999999999999754

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=2.3e-45  Score=378.73  Aligned_cols=216  Identities=27%  Similarity=0.461  Sum_probs=175.9

Q ss_pred             ceEEEEEECCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||+|.+.+ .||||+++         +.|.+|+++|++++|||||+++|+|.+  +.++||||||++|+|.++|+...
T Consensus        50 G~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~--~~~~iVmEy~~gGsL~~~l~~~~  126 (307)
T 3omv_A           50 GTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK--DNLAIVTQWCEGSSLYKHLHVQE  126 (307)
T ss_dssp             SEEEEEESSS-EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS--SSCEEEEECCSSCBHHHHHHTSC
T ss_pred             cEEEEEEECC-cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC--CeEEEEEEcCCCCCHHHHHhhcC
Confidence            5899999866 48999985         358899999999999999999999853  46899999999999999997654


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                      .         .++|.+++.|+.|||.||+|||+++   ||||||||+||||++++.+||+|||+|+...           
T Consensus       127 ~---------~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~  194 (307)
T 3omv_A          127 T---------KFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQP  194 (307)
T ss_dssp             C---------CCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC------------C
T ss_pred             C---------CCCHHHHHHHHHHHHHHHHHHHHCC---ccCCccCHHHEEECCCCcEEEeeccCceecccCCcceeeccc
Confidence            3         3999999999999999999999987   9999999999999999999999999996431           


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                       ..++.|+|||||||+||||+||+.||.........      ...         .......|.+
T Consensus       195 ~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~------~~~---------~~~~~~~p~~  259 (307)
T 3omv_A          195 TGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQI------IFM---------VGRGYASPDL  259 (307)
T ss_dssp             CCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHH------HHH---------HHTTCCCCCS
T ss_pred             ccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHH------HHH---------HhcCCCCCCc
Confidence                             11456899999999999999999999764432111      100         1122233433


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      . ..+.+++..+.+|+.+||+.||++||||.||++.|+.+..+.
T Consensus       260 ~-~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~l  302 (307)
T 3omv_A          260 S-KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSL  302 (307)
T ss_dssp             T-TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTC
T ss_pred             c-cccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccC
Confidence            2 334456667899999999999999999999999998876553

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=2.5e-45  Score=382.91  Aligned_cols=222  Identities=26%  Similarity=0.404  Sum_probs=173.7

Q ss_pred             ceEEEEEE-------CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI-------DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~-------~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||+|.+       +|+.||||+++       ++|.+|+++|++++|||||+++|+|.+. +..+||||||++|+|.++
T Consensus        55 G~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~-~~~~lV~Ey~~~G~L~~~  133 (329)
T 4aoj_A           55 GKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEG-RPLLMVFEYMRHGDLNRF  133 (329)
T ss_dssp             EEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS-SSEEEEEECCTTCBHHHH
T ss_pred             cEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC-CEEEEEEEcCCCCcHHHH
Confidence            58999986       36889999986       4588999999999999999999999764 479999999999999999


Q ss_pred             hccCCCCCCC-----CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-
Q 047629          409 LHPKSKSSSS-----SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-  482 (615)
Q Consensus       409 L~~~~~~~~~-----~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-  482 (615)
                      |+........     ......|+|.+++.|+.|||.||+|||+++   |+||||||+||||++++.+||+|||+|+... 
T Consensus       134 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~~Ki~DFGla~~~~~  210 (329)
T 4aoj_A          134 LRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVVKIGDFGMSRDIYS  210 (329)
T ss_dssp             HHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEEEECCCC-------
T ss_pred             HHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCC---eecccccHhhEEECCCCcEEEcccccceeccC
Confidence            9865431100     001124999999999999999999999987   9999999999999999999999999997531 


Q ss_pred             ------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHH
Q 047629          483 ------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERL  537 (615)
Q Consensus       483 ------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  537 (615)
                                              ..++.++|||||||+||||+| |+.||......+   ...              .+
T Consensus       211 ~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~---~~~--------------~i  273 (329)
T 4aoj_A          211 TDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE---AID--------------CI  273 (329)
T ss_dssp             ---------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHH---HHH--------------HH
T ss_pred             CCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHH---HHH--------------HH
Confidence                                    125678999999999999999 899997644211   111              01


Q ss_pred             hhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          538 RNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       538 ~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      .+-..+    ..|..++..+.+|+.+||+.||++||||+||++.|+.+.+..
T Consensus       274 ~~g~~~----~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~p  321 (329)
T 4aoj_A          274 TQGREL----ERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAP  321 (329)
T ss_dssp             HHTCCC----CCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSC
T ss_pred             HcCCCC----CCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhCC
Confidence            111112    234455567899999999999999999999999999887654

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=8.6e-46  Score=381.35  Aligned_cols=221  Identities=26%  Similarity=0.411  Sum_probs=175.4

Q ss_pred             ceEEEEEE-------CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI-------DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~-------~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||+|.+       +|+.||||+++       ++|.+|+++|++++|||||+++|+|.+. +..+||||||++|+|.++
T Consensus        27 G~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~-~~~~lV~Ey~~~G~L~~~  105 (299)
T 4asz_A           27 GKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEG-DPLIMVFEYMKHGDLNKF  105 (299)
T ss_dssp             CCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS-SSEEEEEECCTTCBHHHH
T ss_pred             cEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeC-CEEEEEEEcCCCCcHHHH
Confidence            58999986       36889999985       4588999999999999999999999764 479999999999999999


Q ss_pred             hccCCCCC---CCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---
Q 047629          409 LHPKSKSS---SSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---  482 (615)
Q Consensus       409 L~~~~~~~---~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---  482 (615)
                      |+......   ........|+|.++++|+.|||.||+|||+++   |+||||||+|||+++++.+||+|||+|+...   
T Consensus       106 l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~  182 (299)
T 4asz_A          106 LRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTD  182 (299)
T ss_dssp             HHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGG
T ss_pred             HHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCccCHhhEEECCCCcEEECCcccceecCCCC
Confidence            97643100   00001124999999999999999999999998   9999999999999999999999999986321   


Q ss_pred             ----------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhh
Q 047629          483 ----------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRN  539 (615)
Q Consensus       483 ----------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  539 (615)
                                            ..++.|+|||||||+||||+| |+.||......+   +..    .          +.+
T Consensus       183 ~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~---~~~----~----------i~~  245 (299)
T 4asz_A          183 YYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE---VIE----C----------ITQ  245 (299)
T ss_dssp             CEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH---HHH----H----------HHH
T ss_pred             ceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHH---HHH----H----------HHc
Confidence                                  225679999999999999999 899997644211   111    0          111


Q ss_pred             hcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          540 WMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       540 ~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      -..    ...|..++..+.+|+.+||+.||++||||+||++.|+.+.+.
T Consensus       246 ~~~----~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~  290 (299)
T 4asz_A          246 GRV----LQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA  290 (299)
T ss_dssp             TCC----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCC----CCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence            011    123445566789999999999999999999999999887654

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=1.3e-44  Score=374.06  Aligned_cols=234  Identities=24%  Similarity=0.375  Sum_probs=174.5

Q ss_pred             ceEEEEEECCeEEEEEEccH----HHH--HHHHHHHhcCCCCcccEEEEEEcCCC---cEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATIDGKVLAVKKIKE----DVT--EELRILQRINHANLVKLMGVSSDSQG---NRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~~----~~~--~Ei~~l~~l~H~niv~l~g~~~~~~~---~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||+|.++|+.||||+++.    ++.  .|+..+.+++|||||+++|+|.+.++   .++||||||++|+|.++|+.. 
T Consensus        17 G~Vy~~~~~g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~gsL~~~l~~~-   95 (303)
T 3hmm_A           17 GEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY-   95 (303)
T ss_dssp             SEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHC-
T ss_pred             eEEEEEEECCEEEEEEEECccchhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEecCCCCCcHHHHHHhC-
Confidence            58999999999999999963    233  45556678899999999999976442   479999999999999999754 


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhC-----CCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-----
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH-----AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-----  483 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-----~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-----  483 (615)
                                .++|.++++++.|+|.||+|||++     ..++|+||||||+|||||.++++||+|||+|+....     
T Consensus        96 ----------~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~  165 (303)
T 3hmm_A           96 ----------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTI  165 (303)
T ss_dssp             ----------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEE
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccCCCCce
Confidence                      289999999999999999999987     244699999999999999999999999999854210     


Q ss_pred             ----------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHH
Q 047629          484 ----------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREE  535 (615)
Q Consensus       484 ----------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~  535 (615)
                                                  .+++|+|||||||+||||+||+.|+......+... ..........+.....
T Consensus       166 ~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~  244 (303)
T 3hmm_A          166 DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPY-YDLVPSDPSVEEMRKV  244 (303)
T ss_dssp             SCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTT-TTTSCSSCCHHHHHHH
T ss_pred             eeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccc-hhcccccchHHHHHHH
Confidence                                        02347999999999999999988765432211000 0000000000001111


Q ss_pred             HHhhhcCCcCCCCC-ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          536 RLRNWMDPNLESFY-PIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       536 ~~~~~~dp~l~~~~-~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      ...+..+|.+.... +.+....+.+|+.+||+.||++||||.||++.|+.+.+.
T Consensus       245 ~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~  298 (303)
T 3hmm_A          245 VCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             HTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence            22334455553332 235667889999999999999999999999999988654

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=1.2e-43  Score=373.40  Aligned_cols=224  Identities=26%  Similarity=0.384  Sum_probs=176.0

Q ss_pred             ceEEEEEEC-------CeEEEEEEcc--------HHHHHHHHHHHhcCC-CCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATID-------GKVLAVKKIK--------EDVTEELRILQRINH-ANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~~-------g~~vAvK~~~--------~~~~~Ei~~l~~l~H-~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      |.||+|.+.       ++.||||+++        +.+.+|+++|.+++| ||||+++|+|.+.++.++||||||++|+|.
T Consensus        78 G~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~~~~iV~Ey~~~G~L~  157 (353)
T 4ase_A           78 GQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLS  157 (353)
T ss_dssp             EEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEEEECCTTEEHH
T ss_pred             eEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCCEEEEEEEcCCCCCHH
Confidence            589999873       3689999985        347889999999955 899999999976555689999999999999


Q ss_pred             HhhccCCCCCC------CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCC
Q 047629          407 KWLHPKSKSSS------SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAP  480 (615)
Q Consensus       407 ~~L~~~~~~~~------~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  480 (615)
                      ++|+.......      .......|+|.+++.++.|||.||+|||+++   ||||||||+|||+++++.+||+|||+|+.
T Consensus       158 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~~vKi~DFGlar~  234 (353)
T 4ase_A          158 TYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILLSEKNVVKICDFGLARD  234 (353)
T ss_dssp             HHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCGGGSC
T ss_pred             HHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCC---eecCccCccceeeCCCCCEEECcchhhhh
Confidence            99976432100      0001124999999999999999999999998   99999999999999999999999999975


Q ss_pred             CCC-------------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHH
Q 047629          481 ATN-------------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKRE  534 (615)
Q Consensus       481 ~~~-------------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~  534 (615)
                      ...                         .++.++|||||||+||||+| |+.||......+.  +.    .         
T Consensus       235 ~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~--~~----~---------  299 (353)
T 4ase_A          235 IYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE--FC----R---------  299 (353)
T ss_dssp             TTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH--HH----H---------
T ss_pred             cccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHH--HH----H---------
Confidence            421                         25678999999999999998 9999976543221  11    1         


Q ss_pred             HHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          535 ERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       535 ~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                       .+.+-..+    ..|..+..++.+++..||+.||++||||.||+++|+.+.++.
T Consensus       300 -~i~~g~~~----~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~  349 (353)
T 4ase_A          300 -RLKEGTRM----RAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN  349 (353)
T ss_dssp             -HHHHTCCC----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred             -HHHcCCCC----CCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHHh
Confidence             11111122    233444556899999999999999999999999999887543

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=1.4e-42  Score=361.52  Aligned_cols=232  Identities=22%  Similarity=0.286  Sum_probs=186.5

Q ss_pred             cccccccc----ceEEEEEE--CCeEEEEEEccHH--HHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          335 LSEHYSIG----KSVYRATI--DGKVLAVKKIKED--VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       335 ~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~~--~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      |....+||    |.||+|..  +|+.||||+++.+  ..+|+.+|++++|||||++++++.+. +.+|||||||++|+|.
T Consensus        60 ~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~~~E~~il~~l~HpnIV~l~~~~~~~-~~~~ivmEy~~gg~L~  138 (336)
T 4g3f_A           60 MTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVEELVACAGLSSPRIVPLYGAVREG-PWVNIFMELLEGGSLG  138 (336)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCTHHHHTTTTCCCTTBCCEEEEEEET-TEEEEEECCCTTCBHH
T ss_pred             eEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHhHHHHHHHHHhCCCCCCCcEEEEEEEC-CEEEEEEeccCCCcHH
Confidence            33344455    58999997  6899999999754  35799999999999999999998764 4799999999999999


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC-cEEEeecCCCCCCC---
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF-KAKIANFSLAAPAT---  482 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-~~kl~DFGla~~~~---  482 (615)
                      ++|+...          .|++.+...++.||+.||+|||+++   |+||||||+||||+.++ .+||+|||+|+...   
T Consensus       139 ~~l~~~~----------~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~  205 (336)
T 4g3f_A          139 QLIKQMG----------CLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG  205 (336)
T ss_dssp             HHHHHHS----------SCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred             HHHHHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---ceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCC
Confidence            9997654          3999999999999999999999998   99999999999999987 69999999996431   


Q ss_pred             -------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHH
Q 047629          483 -------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERL  537 (615)
Q Consensus       483 -------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  537 (615)
                                               ..++.++|||||||+||||++|+.||......+....   +.             
T Consensus       206 ~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~---i~-------------  269 (336)
T 4g3f_A          206 LGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLK---IA-------------  269 (336)
T ss_dssp             --------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHH---HH-------------
T ss_pred             cccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHH---HH-------------
Confidence                                     1256789999999999999999999976543322110   00             


Q ss_pred             hhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchhhhhhccccc
Q 047629          538 RNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTETLERSWTSG  599 (615)
Q Consensus       538 ~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~~~~~~~~~~  599 (615)
                      .+  .+.+ ...+.+....+.+++.+||+.||++|||+.|+++.|....+....+.+.|-.+
T Consensus       270 ~~--~~~~-~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~~~  328 (336)
T 4g3f_A          270 SE--PPPI-REIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKGE  328 (336)
T ss_dssp             HS--CCGG-GGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSSSS
T ss_pred             cC--CCCc-hhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhhhhccCCCcCC
Confidence            00  0111 12334445568899999999999999999999999988877766677778654

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=5.5e-42  Score=350.89  Aligned_cols=209  Identities=21%  Similarity=0.373  Sum_probs=166.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcC---CCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDS---QGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~---~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||+|..  +|+.||||++.         +.|.+|+++|++++|||||++++++.+.   +..++||||||++|+|.++
T Consensus        40 g~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmEy~~gg~L~~~  119 (290)
T 3fpq_A           40 KTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTY  119 (290)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEECCCSCBHHHH
T ss_pred             cEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEeCCCCCCHHHH
Confidence            58999998  68999999985         2478999999999999999999987542   2347999999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC-CCcEEEeecCCCCCCC-----
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS-RFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-~~~~kl~DFGla~~~~-----  482 (615)
                      |....          .+++..+..|+.||+.||+|||+++ ++|+||||||+||||+. ++.+||+|||+|+...     
T Consensus       120 l~~~~----------~l~~~~~~~~~~qi~~aL~ylH~~~-~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~~~~  188 (290)
T 3fpq_A          120 LKRFK----------VMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAK  188 (290)
T ss_dssp             HHHHS----------SCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBE
T ss_pred             HHhcC----------CCCHHHHHHHHHHHHHHHHHHHHCC-CCEEecccChhheeEECCCCCEEEEeCcCCEeCCCCccC
Confidence            97643          3899999999999999999999985 45999999999999985 7999999999996532     


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ..++.++|||||||+||||+||+.||....+..  .+..              .+..-..|.   
T Consensus       189 ~~~GTp~YmAPE~~~~~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~--~~~~--------------~i~~~~~~~---  249 (290)
T 3fpq_A          189 AVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAA--QIYR--------------RVTSGVKPA---  249 (290)
T ss_dssp             ESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHH--HHHH--------------HHTTTCCCG---
T ss_pred             CcccCccccCHHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHH--HHHH--------------HHHcCCCCC---
Confidence                           125678999999999999999999997543211  1110              111111111   


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .++......+.+|+.+||+.||++|||++|++++
T Consensus       250 ~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~H  283 (290)
T 3fpq_A          250 SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNH  283 (290)
T ss_dssp             GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             CCCccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            1122223457899999999999999999999864

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=4.7e-41  Score=351.13  Aligned_cols=205  Identities=24%  Similarity=0.376  Sum_probs=169.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||+|..  +|+.||||+++       +.+.+|+++|++++|||||++++++.+. +.+|||||||++|+|.+++... 
T Consensus        88 G~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~-~~~~ivmEy~~gg~L~~~l~~~-  165 (346)
T 4fih_A           88 GIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVG-DELWVVMEFLEGGALTDIVTHT-  165 (346)
T ss_dssp             CEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEET-TEEEEEECCCTTEEHHHHHHHS-
T ss_pred             eEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC-CEEEEEEeCCCCCcHHHHHHcC-
Confidence            58999998  69999999985       3478999999999999999999998764 4899999999999999999753 


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                                .+++.++..++.||+.||+|||+++   |+||||||+||||+.++.+||+|||+|+...           
T Consensus       166 ----------~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~G  232 (346)
T 4fih_A          166 ----------RMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVG  232 (346)
T ss_dssp             ----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCS
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHHCC---cccccCCHHHEEECCCCCEEEecCcCceecCCCCCccccccc
Confidence                      2899999999999999999999998   9999999999999999999999999996532           


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  ..++.++|||||||++|||++|+.||.....   .....              .+.+...+.+.  .+
T Consensus       233 Tp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~---~~~~~--------------~i~~~~~~~~~--~~  293 (346)
T 4fih_A          233 TPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP---LKAMK--------------MIRDNLPPRLK--NL  293 (346)
T ss_dssp             CGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH---HHHHH--------------HHHHSSCCCCS--CG
T ss_pred             CcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH---HHHHH--------------HHHcCCCCCCC--cc
Confidence                        1256799999999999999999999975432   11111              11222222221  22


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ......+.+|+.+||+.||++|||+.|++++
T Consensus       294 ~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H  324 (346)
T 4fih_A          294 HKVSPSLKGFLDRLLVRDPAQRATAAELLKH  324 (346)
T ss_dssp             GGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             ccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            3344568899999999999999999999875

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=3.7e-41  Score=352.47  Aligned_cols=206  Identities=23%  Similarity=0.380  Sum_probs=168.3

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.||++..  +|+.||||+++         +.+.+|+++|++++|||||++++++.+. +.+|||||||++|+|.++|..
T Consensus        38 g~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~-~~~yiVmEy~~gg~L~~~i~~  116 (350)
T 4b9d_A           38 GKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEEN-GSLYIVMDYCEGGDLFKRINA  116 (350)
T ss_dssp             -CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-TEEEEEEECCTTCBHHHHHHH
T ss_pred             eEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEEC-CEEEEEEeCCCCCcHHHHHHH
Confidence            58999997  69999999985         3478999999999999999999998764 589999999999999999976


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------  482 (615)
                      ....        .+++.+.+.|+.||+.||+|||+++   |+||||||+||||+.++.+||+|||+|+...         
T Consensus       117 ~~~~--------~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~  185 (350)
T 4b9d_A          117 QKGV--------LFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARAC  185 (350)
T ss_dssp             TTTC--------CCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHHHHHHHHH
T ss_pred             cCCC--------CCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCCHHHEEECCCCCEEEcccccceeecCCccccccc
Confidence            4431        3789999999999999999999998   9999999999999999999999999997642         


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                    ..++.++|||||||+||||++|+.||......   .+   +...          +.... |.+   
T Consensus       186 ~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~---~~---~~~i----------~~~~~-~~~---  245 (350)
T 4b9d_A          186 IGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMK---NL---VLKI----------ISGSF-PPV---  245 (350)
T ss_dssp             HSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH---HH---HHHH----------HHTCC-CCC---
T ss_pred             CCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH---HH---HHHH----------HcCCC-CCC---
Confidence                          23567999999999999999999999754321   11   1111          11111 122   


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       +......+.+|+.+||+.||++|||+.|++++
T Consensus       246 -~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h  277 (350)
T 4b9d_A          246 -SLHYSYDLRSLVSQLFKRNPRDRPSVNSILEK  277 (350)
T ss_dssp             -CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             -CccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence             22334567899999999999999999999874

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=4.5e-40  Score=352.04  Aligned_cols=205  Identities=23%  Similarity=0.373  Sum_probs=169.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||+|..  +|+.||||+++       +.+.+|+++|++++|||||++++++.+. +.+|||||||++|+|.+++... 
T Consensus       165 G~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~-~~~~iVmEy~~gG~L~~~i~~~-  242 (423)
T 4fie_A          165 GIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVG-DELWVVMEFLEGGALTDIVTHT-  242 (423)
T ss_dssp             CEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEET-TEEEEEEECCTTEEHHHHHHHS-
T ss_pred             cEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEEC-CEEEEEEeCCCCCcHHHHHhcc-
Confidence            58999998  69999999985       3588999999999999999999998864 4899999999999999999753 


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                                .+++.++..|+.||+.||+|||+++   |+||||||+||||+.++.+||+|||+|+...           
T Consensus       243 ----------~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~G  309 (423)
T 4fie_A          243 ----------RMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVG  309 (423)
T ss_dssp             ----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCCCEE
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHHCC---eecccCCHHHEEEcCCCCEEEecCccceECCCCCcccccccc
Confidence                      2899999999999999999999998   9999999999999999999999999996532           


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  ..++.++|||||||++|||++|+.||.....   ....              ..+.....+.+.  .+
T Consensus       310 Tp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~---~~~~--------------~~i~~~~~~~~~--~~  370 (423)
T 4fie_A          310 TPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP---LKAM--------------KMIRDNLPPRLK--NL  370 (423)
T ss_dssp             CTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH---HHHH--------------HHHHHSCCCCCS--CT
T ss_pred             CcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH---HHHH--------------HHHHcCCCCCCc--cc
Confidence                        1256799999999999999999999975432   1111              112222223332  12


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ......+.+|+.+||+.||++|||+.|++++
T Consensus       371 ~~~s~~~~dli~~~L~~dP~~R~ta~ell~H  401 (423)
T 4fie_A          371 HKVSPSLKGFLDRLLVRDPAQRATAAELLKH  401 (423)
T ss_dssp             TSSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             ccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            2334567899999999999999999999875

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=9.4e-40  Score=331.58  Aligned_cols=202  Identities=26%  Similarity=0.390  Sum_probs=162.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||||+++          ..+.+|+++|++++|||||++++++.+. +..|+||||+ +|+|.+++.
T Consensus        27 g~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~-~~~~ivmEy~-~g~L~~~l~  104 (275)
T 3hyh_A           27 GKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSK-DEIIMVIEYA-GNELFDYIV  104 (275)
T ss_dssp             CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEEEEECC-CEEHHHHHH
T ss_pred             eEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEEC-CEEEEEEeCC-CCCHHHHHH
Confidence            58999987  69999999884          2477899999999999999999998754 4899999999 689999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------  483 (615)
                      ...          .+++.+...++.||+.||+|||+++   |+||||||+|||+++++++||+|||+|+....       
T Consensus       105 ~~~----------~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~~~~  171 (275)
T 3hyh_A          105 QRD----------KMSEQEARRFFQQIISAVEYCHRHK---IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTS  171 (275)
T ss_dssp             HSC----------SCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCTTTEEECTTCCEEECCSSCC------------
T ss_pred             HcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---cccccCChHHeEECCCCCEEEeecCCCeecCCCCccCCe
Confidence            654          3999999999999999999999998   99999999999999999999999999975321       


Q ss_pred             ---------------C-CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          484 ---------------D-VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       484 ---------------~-~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     . .+.++||||+||++|||++|+.||.....   ..+...              +.. -.+.   
T Consensus       172 ~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~---~~~~~~--------------i~~-~~~~---  230 (275)
T 3hyh_A          172 CGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI---PVLFKN--------------ISN-GVYT---  230 (275)
T ss_dssp             ---CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHH--------------HHH-TCCC---
T ss_pred             eECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCH---HHHHHH--------------HHc-CCCC---
Confidence                           1 24689999999999999999999975331   111110              100 0112   


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       +|......+.+|+.+|++.||++|||++|++++
T Consensus       231 -~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  263 (275)
T 3hyh_A          231 -LPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQD  263 (275)
T ss_dssp             -CCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHC
T ss_pred             -CCCCCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence             223334557899999999999999999999874

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=3e-40  Score=340.11  Aligned_cols=202  Identities=21%  Similarity=0.355  Sum_probs=165.9

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||||++++          .+.+|+++|++++|||||++++++.+. +.+||||||+++|+|.++|.
T Consensus        46 g~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-~~~yivmEy~~gG~L~~~i~  124 (311)
T 4aw0_A           46 STVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDD-EKLYFGLSYAKNGELLKYIR  124 (311)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECS-SEEEEEECCCTTEEHHHHHH
T ss_pred             eEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeC-CEEEEEEecCCCCCHHHHHH
Confidence            58999997  799999999863          367899999999999999999998754 48999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------  483 (615)
                      ...          .+++.+...++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+|+....       
T Consensus       125 ~~~----------~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~  191 (311)
T 4aw0_A          125 KIG----------SFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARA  191 (311)
T ss_dssp             HHS----------SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCB
T ss_pred             HcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccc
Confidence            654          3899999999999999999999998   99999999999999999999999999975421       


Q ss_pred             ------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          484 ------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       484 ------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                        .++.++||||+||+||||++|+.||.....   ..+..   ..          ..  .++. 
T Consensus       192 ~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~---~~~~~---~i----------~~--~~~~-  252 (311)
T 4aw0_A          192 NSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE---GLIFA---KI----------IK--LEYD-  252 (311)
T ss_dssp             CCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHH---HH----------HH--TCCC-
T ss_pred             cCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH---HHHHH---HH----------Hc--CCCC-
Confidence                              145689999999999999999999975431   11111   11          01  1122 


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                         +|......+.+|+.+|++.||++|||++|++.
T Consensus       253 ---~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~  284 (311)
T 4aw0_A          253 ---FPEKFFPKARDLVEKLLVLDATKRLGCEEMEG  284 (311)
T ss_dssp             ---CCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTC
T ss_pred             ---CCcccCHHHHHHHHHHccCCHhHCcChHHHcC
Confidence               23333446789999999999999999998754

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=8.5e-40  Score=336.43  Aligned_cols=202  Identities=22%  Similarity=0.291  Sum_probs=158.9

Q ss_pred             ceEEEEEE-----CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI-----DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~-----~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||++..     .++.||||++++         .+.+|+++|++++|||||++++++.+. +..|+|||||++|+|.++
T Consensus        38 g~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-~~~~ivmEy~~gg~L~~~  116 (304)
T 3ubd_A           38 GKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTE-GKLYLILDFLRGGDLFTR  116 (304)
T ss_dssp             CEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEET-TEEEEEECCCTTCEEHHH
T ss_pred             eEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEEC-CEEEEEEEcCCCCCHHHH
Confidence            58999975     468999999852         478899999999999999999998764 589999999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      |....          .+++.+...++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+|+...      
T Consensus       117 l~~~~----------~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~  183 (304)
T 3ubd_A          117 LSKEV----------MFTEEDVKFYLAELALALDHLHSLG---IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKA  183 (304)
T ss_dssp             HHHHC----------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECTTSCEEEESSEEEEC-----CCC
T ss_pred             HHhcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHeEEcCCCCEEecccccceeccCCCccc
Confidence            97654          3899999999999999999999998   9999999999999999999999999996431      


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                       ..++.++||||+||+||||++|+.||......+   +.   ...          ...  .+  
T Consensus       184 ~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~---~~---~~i----------~~~--~~--  243 (304)
T 3ubd_A          184 YSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKE---TM---TMI----------LKA--KL--  243 (304)
T ss_dssp             CSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH---HHH----------HHC--CC--
T ss_pred             cccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHH---HH---HHH----------HcC--CC--
Confidence                             125678999999999999999999997543211   11   100          111  11  


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCH-----HHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNM-----AEVVF  580 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm-----~ev~~  580 (615)
                        .+|......+.+|+.+||+.||++|||+     +|+++
T Consensus       244 --~~p~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~  281 (304)
T 3ubd_A          244 --GMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKR  281 (304)
T ss_dssp             --CCCTTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHT
T ss_pred             --CCCCcCCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHc
Confidence              2233344567899999999999999984     55554

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=6.2e-38  Score=323.03  Aligned_cols=203  Identities=21%  Similarity=0.397  Sum_probs=156.5

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCC-----------cEEEEEeecC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQG-----------NRFLVYEYAE  401 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~-----------~~~lV~E~~~  401 (615)
                      |.||+|..  +|+.||||+++        +.+.+|+++|++++|||||++++++.+.+.           .+|+|||||+
T Consensus        19 g~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~~~~~l~ivmE~~~   98 (299)
T 4g31_A           19 GVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCR   98 (299)
T ss_dssp             -EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC----------CEEEEEEEECCC
T ss_pred             eEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccccCCCcEEEEEEecCC
Confidence            58999997  69999999985        347789999999999999999998864332           3689999999


Q ss_pred             CCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC
Q 047629          402 NGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA  481 (615)
Q Consensus       402 ~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  481 (615)
                      +|+|.+++......       ...++..++.|+.||+.||+|||+++   |+||||||+|||++.++.+||+|||+|+..
T Consensus        99 gg~L~~~l~~~~~~-------~~~~~~~~~~i~~qi~~al~ylH~~~---IiHRDlKp~NILl~~~~~vKl~DFGla~~~  168 (299)
T 4g31_A           99 KENLKDWMNGRCTI-------EERERSVCLHIFLQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAM  168 (299)
T ss_dssp             SCCHHHHHHTCCSG-------GGSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECCCCCC---
T ss_pred             CCcHHHHHHhcCCC-------ChhHHHHHHHHHHHHHHHHHHHHHCc---CccccCcHHHeEECCCCcEEEccCccceec
Confidence            99999999865431       13677888999999999999999998   999999999999999999999999998643


Q ss_pred             C-----------------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHH
Q 047629          482 T-----------------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREV  526 (615)
Q Consensus       482 ~-----------------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~  526 (615)
                      .                                   ..++.++|||||||++|||++   ||....  +.   ...+.  
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~--~~---~~~~~--  238 (299)
T 4g31_A          169 DQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQM--ER---VRTLT--  238 (299)
T ss_dssp             -----------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHH--HH---HHHHH--
T ss_pred             CCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCcc--HH---HHHHH--
Confidence            1                                   125678999999999999997   654211  00   00000  


Q ss_pred             HhHHHHHHHHHhhhcCCcCCCCCCh---HHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          527 LKVEEKREERLRNWMDPNLESFYPI---DGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       527 ~~~~~~~~~~~~~~~dp~l~~~~~~---~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                               .+..       ..+|.   +......+|+.+||+.||++|||+.|++++
T Consensus       239 ---------~~~~-------~~~p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h  280 (299)
T 4g31_A          239 ---------DVRN-------LKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIEN  280 (299)
T ss_dssp             ---------HHHT-------TCCCHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             ---------HHhc-------CCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence                     0111       11221   222346789999999999999999999873

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=1.3e-37  Score=323.75  Aligned_cols=249  Identities=31%  Similarity=0.529  Sum_probs=201.0

Q ss_pred             HHHHHHccccccccccc----ceEEEEEE-CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcE
Q 047629          326 EVIMESTMNLSEHYSIG----KSVYRATI-DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNR  393 (615)
Q Consensus       326 ~~l~~at~~~~~~~~iG----~~Vy~~~~-~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~  393 (615)
                      .++...+++|.....+|    |.||+|.. +|+.||||++.       +.+.+|++++++++||||+++++++.+ ++..
T Consensus        32 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~  110 (321)
T 2qkw_B           32 VDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDE-RNEM  110 (321)
T ss_dssp             SCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCC-TTCC
T ss_pred             HHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CCeE
Confidence            34455667777776776    58999998 68999999875       457899999999999999999999865 4478


Q ss_pred             EEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEe
Q 047629          394 FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIA  473 (615)
Q Consensus       394 ~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~  473 (615)
                      ++||||+++|+|.+++.......      ..++|.+++.++.|++.||.|||+++   |+||||||+|||++.++.+||+
T Consensus       111 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~~~~~~~i~~~i~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~  181 (321)
T 2qkw_B          111 ILIYKYMENGNLKRHLYGSDLPT------MSMSWEQRLEICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVPKIT  181 (321)
T ss_dssp             EEEEECCTTCBTGGGSSSSCCCS------CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCSTTEEECTTCCEEEC
T ss_pred             EEEEEcCCCCcHHHHHhccCCCc------cccCHHHHHHHHHHHHHHHHHhcCCC---eecCCCCHHHEEECCCCCEEEe
Confidence            99999999999999997654221      24899999999999999999999998   9999999999999999999999


Q ss_pred             ecCCCCCCC-------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHh
Q 047629          474 NFSLAAPAT-------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLK  528 (615)
Q Consensus       474 DFGla~~~~-------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~  528 (615)
                      |||+++...                         ..++.++||||||+++|||++|+.|+......+......+....  
T Consensus       182 Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~--  259 (321)
T 2qkw_B          182 DFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVES--  259 (321)
T ss_dssp             CCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHH--
T ss_pred             ecccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhc--
Confidence            999986421                         12456899999999999999999999765433322222221111  


Q ss_pred             HHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          529 VEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       529 ~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                         .....+...+++.+....+.+....+.+++.+||+.||++|||+.|+++.|+.+....
T Consensus       260 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~~  317 (321)
T 2qkw_B          260 ---HNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQ  317 (321)
T ss_dssp             ---HTTTCCCSSSSSSCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred             ---cccccHHHhcChhhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhcc
Confidence               1123455667787777788889999999999999999999999999999999776543

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=2.6e-36  Score=311.36  Aligned_cols=250  Identities=30%  Similarity=0.527  Sum_probs=201.7

Q ss_pred             ceeeeHHHHHHHccccccc------cccc----ceEEEEEECCeEEEEEEcc-----------HHHHHHHHHHHhcCCCC
Q 047629          320 PIVYEIEVIMESTMNLSEH------YSIG----KSVYRATIDGKVLAVKKIK-----------EDVTEELRILQRINHAN  378 (615)
Q Consensus       320 ~~~~~~~~l~~at~~~~~~------~~iG----~~Vy~~~~~g~~vAvK~~~-----------~~~~~Ei~~l~~l~H~n  378 (615)
                      ...|+++++.+++.+|.+.      ..+|    |.||+|..+++.||||++.           +.+.+|+.++++++|||
T Consensus        12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~   91 (307)
T 2nru_A           12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN   91 (307)
T ss_dssp             CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEESSSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred             CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEECCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence            3678999999999999987      5565    5899999999999999874           34778999999999999


Q ss_pred             cccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCC
Q 047629          379 LVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIR  458 (615)
Q Consensus       379 iv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk  458 (615)
                      |+++++++.+. +..++||||+++|+|.+++......       ..++|..++.++.|++.||.|||+++   ++|||||
T Consensus        92 i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~~~-------~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dlk  160 (307)
T 2nru_A           92 LVELLGFSSDG-DDLCLVYVYMPNGSLLDRLSCLDGT-------PPLSWHMRCKIAQGAANGINFLHENH---HIHRDIK  160 (307)
T ss_dssp             BCCEEEEECSS-SSCEEEEECCTTCBHHHHHHTGGGC-------CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCC
T ss_pred             eEEEEEEEecC-CceEEEEEecCCCcHHHHHHhccCC-------CCCCHHHHHHHHHHHHHHHHHHhcCC---eecCCCC
Confidence            99999998754 4789999999999999999753321       14899999999999999999999998   9999999


Q ss_pred             CCceeeCCCCcEEEeecCCCCCCCC------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCC
Q 047629          459 TNNIQLDSRFKAKIANFSLAAPATN------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENG  514 (615)
Q Consensus       459 ~~NILld~~~~~kl~DFGla~~~~~------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~  514 (615)
                      |+||+++.++.+||+|||+++....                        .++.++||||||+++|||++|+.|+......
T Consensus       161 p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~  240 (307)
T 2nru_A          161 SANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREP  240 (307)
T ss_dssp             GGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTTEECTHHHHHHHHHHHHHHHHCCCSBCTTBSS
T ss_pred             HHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcCCCCccchhHHHHHHHHHHHHCCCCcccCcch
Confidence            9999999999999999999854321                        1356899999999999999999999765433


Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhccc
Q 047629          515 KTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       515 ~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~  587 (615)
                      .....+  ......    ....+.+++++.+ ...+......+.+++..||+.||.+|||++||++.|+.+..
T Consensus       241 ~~~~~~--~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~  306 (307)
T 2nru_A          241 QLLLDI--KEEIED----EEKTIEDYIDKKM-NDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA  306 (307)
T ss_dssp             SBTTHH--HHHHHT----TSCCHHHHSCSSC-SCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred             HHHHHH--HHHhhh----hhhhhhhhccccc-cccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence            221111  111100    0122445566555 34567778889999999999999999999999999998764

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=2.7e-37  Score=321.68  Aligned_cols=256  Identities=34%  Similarity=0.580  Sum_probs=206.7

Q ss_pred             CceeeeHHHHHHHccccccccccc----ceEEEEEE-CCeEEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEE
Q 047629          319 KPIVYEIEVIMESTMNLSEHYSIG----KSVYRATI-DGKVLAVKKIKE--------DVTEELRILQRINHANLVKLMGV  385 (615)
Q Consensus       319 ~~~~~~~~~l~~at~~~~~~~~iG----~~Vy~~~~-~g~~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~  385 (615)
                      ....|+++++...+++|.....+|    |.||+|.. +|+.||||+++.        .+.+|++++++++|+||++++++
T Consensus        16 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~   95 (326)
T 3uim_A           16 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF   95 (326)
T ss_dssp             CCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEE
T ss_pred             ccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEE
Confidence            356788999999999999888887    58999987 689999999862        47899999999999999999999


Q ss_pred             EEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeC
Q 047629          386 SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD  465 (615)
Q Consensus       386 ~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld  465 (615)
                      +.+. +..++||||+++|+|.+++.......      ..++|..+..++.|++.||.|||++..++|+||||||+|||++
T Consensus        96 ~~~~-~~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~  168 (326)
T 3uim_A           96 CMTP-TERLLVYPYMANGSVASCLRERPESQ------PPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLD  168 (326)
T ss_dssp             ECCS-SCCEEEEECCTTCBHHHHHHCCSTTC------CCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEEC
T ss_pred             EecC-CceEEEEEeccCCCHHHHHHhccccC------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEEC
Confidence            8754 47899999999999999998754321      2489999999999999999999999333499999999999999


Q ss_pred             CCCcEEEeecCCCCCCCC------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCC--CChhHHH
Q 047629          466 SRFKAKIANFSLAAPATN------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTE--NGKTAVL  519 (615)
Q Consensus       466 ~~~~~kl~DFGla~~~~~------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~--~~~~~~l  519 (615)
                      .++.+||+|||+++....                        .++.++||||||+++|||++|+.||....  .......
T Consensus       169 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~  248 (326)
T 3uim_A          169 EEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVML  248 (326)
T ss_dssp             TTCCEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBH
T ss_pred             CCCCEEeccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhH
Confidence            999999999999964321                        13458999999999999999999996311  1111111


Q ss_pred             HHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcc
Q 047629          520 WKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLT  586 (615)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~  586 (615)
                      ..++.....     ...+....++.+...++.+....+.+++.+||+.||.+|||++||+++|+...
T Consensus       249 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~  310 (326)
T 3uim_A          249 LDWVKGLLK-----EKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDG  310 (326)
T ss_dssp             HHHHTTTTS-----SCCSTTSSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSS
T ss_pred             HHHHHHHhh-----chhhhhhcChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcc
Confidence            222221111     22345666777777888899999999999999999999999999999998643

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=324.02  Aligned_cols=222  Identities=19%  Similarity=0.282  Sum_probs=164.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcC-----CCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDS-----QGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~-----~~~~~lV~E~~~~GsL~  406 (615)
                      |.||+|..  +|+.||||+++         +.+.+|+++|++++|||||++++++...     .+.+|||||||+ |+|.
T Consensus        68 G~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~~~ivmE~~~-g~L~  146 (398)
T 4b99_A           68 GVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYVVLDLME-SDLH  146 (398)
T ss_dssp             CEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCCEEEEEECCS-EEHH
T ss_pred             eEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCEEEEEEeCCC-CCHH
Confidence            58999997  69999999985         2367899999999999999999986532     246899999996 7899


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----  482 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----  482 (615)
                      +++....          .+++.++..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+|+...    
T Consensus       147 ~~i~~~~----------~l~~~~~~~~~~qil~al~ylH~~~---iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~  213 (398)
T 4b99_A          147 QIIHSSQ----------PLTLEHVRYFLYQLLRGLKYMHSAQ---VIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPA  213 (398)
T ss_dssp             HHHTSSS----------CCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTCCEEECCCTTCBCC-----
T ss_pred             HHHHhcC----------CCCHHHHHHHHHHHHHHHHHHHHCc---CcCCCcCccccccCCCCCEEEeecceeeecccCcc
Confidence            9997654          3999999999999999999999998   9999999999999999999999999996431    


Q ss_pred             ------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhH---H---HH
Q 047629          483 ------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV---E---EK  532 (615)
Q Consensus       483 ------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~---~---~~  532 (615)
                                              ..++.++||||+||++|||++|+.||......+..   ..+......   .   ..
T Consensus       214 ~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l---~~I~~~~g~p~~~~~~~~  290 (398)
T 4b99_A          214 EHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQL---QLIMMVLGTPSPAVIQAV  290 (398)
T ss_dssp             --CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHH---HHHHHHHCCCCGGGTC--
T ss_pred             ccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHH---HHHHHhcCCCChHHhhhh
Confidence                                    11456899999999999999999999765432211   111111100   0   00


Q ss_pred             HH---HHHhhhcCCcCCCC---CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          533 RE---ERLRNWMDPNLESF---YPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       533 ~~---~~~~~~~dp~l~~~---~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..   ......+.+.....   ........+.+|+.+||..||++|||+.|++++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  345 (398)
T 4b99_A          291 GAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRH  345 (398)
T ss_dssp             ---CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             hhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence            00   00000011100000   001123457899999999999999999999875

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=1.2e-36  Score=316.83  Aligned_cols=232  Identities=25%  Similarity=0.406  Sum_probs=174.9

Q ss_pred             ceEEEEEECCeEEEEEEccH------HHHHHHHHHHhcCCCCcccEEEEEEcCCC---cEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATIDGKVLAVKKIKE------DVTEELRILQRINHANLVKLMGVSSDSQG---NRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~~------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~---~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||+|...|+.||||+++.      ....|+.++.+++||||+++++++.+...   ..++||||+++|+|.+++... 
T Consensus        38 g~Vy~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~-  116 (322)
T 3soc_A           38 GCVWKAQLLNEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKAN-  116 (322)
T ss_dssp             CEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHC-
T ss_pred             eEEEEEEECCCEEEEEEeecCchHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEEecCCCCCHHHHHHhc-
Confidence            58999999999999999862      34568888999999999999999876432   379999999999999999753 


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhC----------CCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH----------AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN  483 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~----------~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~  483 (615)
                                .++|..+..++.|++.||.|||+.          +   |+||||||+|||++.++.+||+|||+++....
T Consensus       117 ----------~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~---ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~~~  183 (322)
T 3soc_A          117 ----------VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPA---ISHRDIKSKNVLLKNNLTACIADFGLALKFEA  183 (322)
T ss_dssp             ----------CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECE---EECSCCSGGGEEECTTCCEEECCCTTCEEECT
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCC---EEeCCCChHhEEECCCCeEEEccCCccccccc
Confidence                      289999999999999999999998          6   99999999999999999999999999953211


Q ss_pred             ------------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHH
Q 047629          484 ------------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKR  533 (615)
Q Consensus       484 ------------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~  533 (615)
                                                    .++.++|||||||++|||++|+.||.........................
T Consensus       184 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  263 (322)
T 3soc_A          184 GKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQ  263 (322)
T ss_dssp             TSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHH
T ss_pred             ccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhh
Confidence                                          01235699999999999999999997654322111111000000001111


Q ss_pred             HHHHhhhcCCcCCCCC-ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          534 EERLRNWMDPNLESFY-PIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       534 ~~~~~~~~dp~l~~~~-~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      .........|.+...+ .......+.+|+.+||+.||++|||+.||++.|+.+.+.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~  319 (322)
T 3soc_A          264 EVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL  319 (322)
T ss_dssp             HHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             hhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence            1112222333332222 124556799999999999999999999999999988653

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=1.3e-35  Score=313.68  Aligned_cols=162  Identities=25%  Similarity=0.377  Sum_probs=137.0

Q ss_pred             ccccccccc----ceEEEEEE-----CCeEEEEEEcc-----HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEe
Q 047629          334 NLSEHYSIG----KSVYRATI-----DGKVLAVKKIK-----EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYE  398 (615)
Q Consensus       334 ~~~~~~~iG----~~Vy~~~~-----~g~~vAvK~~~-----~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E  398 (615)
                      .|.-...+|    |.||+|..     .++.||||++.     ..+.+|+++|.++ +|||||++++++.+. +..++|||
T Consensus        22 ~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~-~~~~lvmE  100 (361)
T 4f9c_A           22 VFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGVKYCFRKN-DHVVIAMP  100 (361)
T ss_dssp             TCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSCHHHHHHHHHHHHHTCSBTTBCCCSEEEEET-TEEEEEEE
T ss_pred             cEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccCHHHHHHHHHHHHHhcCCCCCceEEEEEEEC-CEEEEEEe
Confidence            344444455    58999975     36889999885     3477899999998 699999999988754 48999999


Q ss_pred             ecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC-CcEEEeecCC
Q 047629          399 YAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR-FKAKIANFSL  477 (615)
Q Consensus       399 ~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-~~~kl~DFGl  477 (615)
                      |+++|+|.+++..             +++.+...++.|++.||+|||+++   |+||||||+|||++.+ +.+||+|||+
T Consensus       101 ~~~g~~L~~~~~~-------------l~~~~~~~~~~qll~al~ylH~~g---IiHRDiKPeNiLl~~~~~~~kl~DFGl  164 (361)
T 4f9c_A          101 YLEHESFLDILNS-------------LSFQEVREYMLNLFKALKRIHQFG---IVHRDVKPSNFLYNRRLKKYALVDFGL  164 (361)
T ss_dssp             CCCCCCHHHHHTT-------------CCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred             CCCcccHHHHHcC-------------CCHHHHHHHHHHHHHHHHHHHHCC---eEeCcCCHHHeEEeCCCCeEEECcCCC
Confidence            9999999999841             889999999999999999999998   9999999999999887 7999999999


Q ss_pred             CCCCC----------------------------------------------------CCCCCcccchhHHHHHHHHHcCC
Q 047629          478 AAPAT----------------------------------------------------NDVMPKFDVFAFGVVLLELLSGK  505 (615)
Q Consensus       478 a~~~~----------------------------------------------------~~~~~k~DV~SfGvvl~ElltG~  505 (615)
                      |+...                                                    ..++.++||||+||++|||++|+
T Consensus       165 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~  244 (361)
T 4f9c_A          165 AQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGR  244 (361)
T ss_dssp             CEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTC
T ss_pred             CcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCC
Confidence            95210                                                    11456889999999999999999


Q ss_pred             CCCCCCC
Q 047629          506 KATRTTE  512 (615)
Q Consensus       506 ~p~~~~~  512 (615)
                      .||....
T Consensus       245 ~Pf~~~~  251 (361)
T 4f9c_A          245 YPFYKAS  251 (361)
T ss_dssp             SSSSCCS
T ss_pred             CCCCCCC
Confidence            9997544

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=1.1e-35  Score=324.24  Aligned_cols=214  Identities=26%  Similarity=0.426  Sum_probs=178.3

Q ss_pred             ceEEEEEECCeEEEEEEcc-----HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCC
Q 047629          343 KSVYRATIDGKVLAVKKIK-----EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSS  417 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~-----~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~  417 (615)
                      |.||+|.+.|+.||||.++     +.+.+|+.+|++++||||+++++++.+.++..++||||+++|+|.+++......  
T Consensus       207 g~V~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~--  284 (450)
T 1k9a_A          207 GDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRS--  284 (450)
T ss_dssp             EEEEEEEETTEEEEEEEESSCTTSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECCTTCBHHHHHHHHCTT--
T ss_pred             eeEEEEEecCCeEEEEEeCCchHHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEecCCCcHHHHHHhcCCC--
Confidence            5899999999999999986     468899999999999999999999887665799999999999999999865421  


Q ss_pred             CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------------
Q 047629          418 SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------------  482 (615)
Q Consensus       418 ~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------------  482 (615)
                            .+++..++.++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...               
T Consensus       285 ------~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~y~aP  355 (450)
T 1k9a_A          285 ------VLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAP  355 (450)
T ss_dssp             ------TCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTSCEEECCCTTCEECC------CCCTTTSCH
T ss_pred             ------CCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCHhhEEECCCCCEEEeeCCCcccccccccCCCCCcceeCH
Confidence                  3789999999999999999999998   9999999999999999999999999986431               


Q ss_pred             -----CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHH
Q 047629          483 -----NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALS  556 (615)
Q Consensus       483 -----~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~  556 (615)
                           ..++.++|||||||++|||++ |+.|+......+...                 .+..-..    ...+..+...
T Consensus       356 E~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~-----------------~i~~~~~----~~~p~~~~~~  414 (450)
T 1k9a_A          356 EALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVP-----------------RVEKGYK----MDAPDGCPPA  414 (450)
T ss_dssp             HHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHH-----------------HHHTTCC----CCCCTTCCHH
T ss_pred             HHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHH-----------------HHHcCCC----CCCCCcCCHH
Confidence                 124668999999999999999 999997654322110                 1111111    1234445567


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          557 LATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       557 l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      +.+|+..||+.||.+|||+.|+++.|+.+...
T Consensus       415 l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~  446 (450)
T 1k9a_A          415 VYDVMKNCWHLDAATRPTFLQLREQLEHIRTH  446 (450)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence            89999999999999999999999999987654

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=1.9e-35  Score=308.35  Aligned_cols=216  Identities=27%  Similarity=0.450  Sum_probs=174.1

Q ss_pred             ceEEEEEE-----CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI-----DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~-----~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|..     .+..||||+++        +.+.+|++++++++|+||+++++++.+. +..++||||+++|+|.+++
T Consensus        63 g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l  141 (325)
T 3kul_A           63 GEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRG-RLAMIVTEYMENGSLDTFL  141 (325)
T ss_dssp             EEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGG-GCCEEEEECCTTCBHHHHH
T ss_pred             cEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeC-CccEEEeeCCCCCcHHHHH
Confidence            58999997     24569999986        2478899999999999999999998654 4789999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------  483 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------  483 (615)
                      .....         .+++.+++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++....      
T Consensus       142 ~~~~~---------~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  209 (325)
T 3kul_A          142 RTHDG---------QFTIMQLVGMLRGVGAGMRYLSDLG---YVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAY  209 (325)
T ss_dssp             HTTTT---------CSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCSSCEECC----CCE
T ss_pred             Hhccc---------CCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCcceEEECCCCCEEECCCCcccccccCcccee
Confidence            75433         3899999999999999999999998   99999999999999999999999999965421      


Q ss_pred             --------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          484 --------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       484 --------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                          .++.++||||||+++|||++ |+.||......+   ..              ..+.....
T Consensus       210 ~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~---~~--------------~~~~~~~~  272 (325)
T 3kul_A          210 TTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRD---VI--------------SSVEEGYR  272 (325)
T ss_dssp             ECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHH---HH--------------HHHHTTCC
T ss_pred             eccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHH---HH--------------HHHHcCCC
Confidence                                13457899999999999999 999987544211   00              01111111


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchhhh
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTETL  592 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~~~  592 (615)
                          ...+......+.+++..||+.||.+|||+.||++.|+.+....+..
T Consensus       273 ----~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~~~  318 (325)
T 3kul_A          273 ----LPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPESL  318 (325)
T ss_dssp             ----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC--
T ss_pred             ----CCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCcccc
Confidence                1223344566899999999999999999999999999988765543

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=6.1e-36  Score=318.69  Aligned_cols=211  Identities=24%  Similarity=0.403  Sum_probs=172.3

Q ss_pred             ceEEEEEE--CCeEEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||+|..  +|+.||||.++.        .+.+|+++|++++||||++++|++.+. +..++||||+++|+|.+++...
T Consensus       128 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~-~~~~lv~e~~~~g~L~~~l~~~  206 (377)
T 3cbl_A          128 GEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQK-QPIYIVMELVQGGDFLTFLRTE  206 (377)
T ss_dssp             EEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSS-SSCEEEEECCTTCBHHHHHHHH
T ss_pred             CeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecC-CCcEEEEEcCCCCCHHHHHHhc
Confidence            58999998  689999999862        367899999999999999999998754 4789999999999999999754


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC---------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN---------  483 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~---------  483 (615)
                      ..         .+++.+++.++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++....         
T Consensus       207 ~~---------~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~  274 (377)
T 3cbl_A          207 GA---------RLRVKTLLQMVGDAAAGMEYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGL  274 (377)
T ss_dssp             GG---------GCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECCSSC
T ss_pred             CC---------CCCHHHHHHHHHHHHHHHHHHHHCC---cCCcccCHHHEEEcCCCcEEECcCCCceecCCCceeecCCC
Confidence            32         3899999999999999999999998   99999999999999999999999999864321         


Q ss_pred             ----------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          484 ----------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       484 ----------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                      .++.++|||||||++|||++ |+.|+......+       +..          .+....    .
T Consensus       275 ~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~-------~~~----------~~~~~~----~  333 (377)
T 3cbl_A          275 RQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQ-------TRE----------FVEKGG----R  333 (377)
T ss_dssp             CEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHH-------HHH----------HHHTTC----C
T ss_pred             CCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH-------HHH----------HHHcCC----C
Confidence                            13458999999999999999 999987544211       010          111111    1


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhccc
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~  587 (615)
                      ...+..++..+.+|+..||+.||++|||+.|+++.|+.+..
T Consensus       334 ~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~  374 (377)
T 3cbl_A          334 LPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRK  374 (377)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHh
Confidence            12233445568899999999999999999999999988754

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=1.2e-35  Score=316.09  Aligned_cols=214  Identities=27%  Similarity=0.450  Sum_probs=167.5

Q ss_pred             ceEEEEEE-----CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI-----DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~-----~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|..     ++..||||+++        +++.+|+.+|++++||||+++++++.+. +..++||||+++|+|.+++
T Consensus        59 g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-~~~~lv~e~~~~~sL~~~l  137 (373)
T 2qol_A           59 GEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKS-KPVMIVTEYMENGSLDSFL  137 (373)
T ss_dssp             SEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS-SSCEEEEECCTTCBHHHHH
T ss_pred             eEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeC-CceEEEEeCCCCCcHHHHH
Confidence            58999986     36789999985        3578999999999999999999998754 4789999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------  483 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------  483 (615)
                      .....         .+++.+++.++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++....      
T Consensus       138 ~~~~~---------~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  205 (373)
T 2qol_A          138 RKHDA---------QFTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAY  205 (373)
T ss_dssp             HTTTT---------CSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCC--------------
T ss_pred             HhCCC---------CCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCcceEEEcCCCCEEECcCccccccccCCccce
Confidence            76542         3899999999999999999999998   99999999999999999999999999865321      


Q ss_pred             --------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          484 --------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       484 --------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                          .++.++||||||+++|||++ |+.|+......+   ..    .          .+.    
T Consensus       206 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~---~~----~----------~i~----  264 (373)
T 2qol_A          206 TTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQD---VI----K----------AVD----  264 (373)
T ss_dssp             --------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHH---HH----H----------HHH----
T ss_pred             eccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH---HH----H----------HHH----
Confidence                                13568999999999999998 999987543211   00    0          011    


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchh
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE  590 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~  590 (615)
                      .......+.+....+.+++..||+.||.+||+|.||++.|+.+.....
T Consensus       265 ~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~~~  312 (373)
T 2qol_A          265 EGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNPG  312 (373)
T ss_dssp             TTEECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCGG
T ss_pred             cCCCCCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhCcc
Confidence            111112233455678999999999999999999999999998876543

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=5.6e-35  Score=302.74  Aligned_cols=218  Identities=28%  Similarity=0.440  Sum_probs=171.6

Q ss_pred             ceEEEEEECCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||++..+|+.||||++.         +.+.+|++++++++|+||+++++++.+. +..++||||+++|+|.+++....
T Consensus        51 g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~  129 (309)
T 3p86_A           51 GTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQP-PNLSIVTEYLSRGSLYRLLHKSG  129 (309)
T ss_dssp             EEEEEEEETTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECST-TCCEEEEECCTTCBHHHHHHSTT
T ss_pred             eEEEEEEECCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC-CceEEEEecCCCCcHHHHHhhcC
Confidence            5899999999999999984         2477899999999999999999998754 47899999999999999997643


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                      ..       ..+++..++.++.|++.||+|||+++ ++|+||||||+|||++.++.+||+|||+++...           
T Consensus       130 ~~-------~~~~~~~~~~i~~qi~~aL~~LH~~~-~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~g  201 (309)
T 3p86_A          130 AR-------EQLDERRRLSMAYDVAKGMNYLHNRN-PPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAG  201 (309)
T ss_dssp             HH-------HHSCHHHHHHHHHHHHHHHHHHHTSS-SCCCCTTCCGGGEEECTTCCEEECCCC-----------------
T ss_pred             CC-------CCCCHHHHHHHHHHHHHHHHHHHcCC-CCEECCCCChhhEEEeCCCcEEECCCCCCccccccccccccCCC
Confidence            21       13899999999999999999999985 459999999999999999999999999985421           


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  ...+.++||||||+++|||++|+.||......+.   .   .          ........    ...+
T Consensus       202 t~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~---~---~----------~~~~~~~~----~~~~  261 (309)
T 3p86_A          202 TPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQV---V---A----------AVGFKCKR----LEIP  261 (309)
T ss_dssp             CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHH---H---H----------HHHHSCCC----CCCC
T ss_pred             CccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH---H---H----------HHHhcCCC----CCCC
Confidence                        1245789999999999999999999975432110   0   0          00001111    1233


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      ......+.+++.+||+.||.+|||+.|+++.|+.+.++.
T Consensus       262 ~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~  300 (309)
T 3p86_A          262 RNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSA  300 (309)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC--
T ss_pred             ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhC
Confidence            344456899999999999999999999999999887653

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=3.2e-35  Score=324.32  Aligned_cols=213  Identities=24%  Similarity=0.398  Sum_probs=175.7

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      |.||+|.+  +++.||||.++      +++.+|+.+|++++||||++++|+|.+. +..++||||+++|+|.+++.....
T Consensus       234 g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~-~~~~lv~E~~~~g~L~~~l~~~~~  312 (495)
T 1opk_A          234 GEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE-PPFYIITEFMTYGNLLDYLRECNR  312 (495)
T ss_dssp             SSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSS-SSCEEEEECCTTCBHHHHHHHSCT
T ss_pred             eEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhcCCCCEeeEEEEEecC-CcEEEEEEccCCCCHHHHHHhcCc
Confidence            58999998  48999999986      4688999999999999999999998754 478999999999999999976432


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-----------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-----------  483 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-----------  483 (615)
                      .        .+++..++.++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++....           
T Consensus       313 ~--------~~~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~  381 (495)
T 1opk_A          313 Q--------EVSAVVLLYMATQISSAMEYLEKKN---FIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF  381 (495)
T ss_dssp             T--------TSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECGGGCEEECCTTCEECCTTCCEECCTTCCC
T ss_pred             C--------CCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChhhEEECCCCcEEEeecccceeccCCceeecCCCcC
Confidence            1        3899999999999999999999998   99999999999999999999999999875421           


Q ss_pred             -------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          484 -------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       484 -------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                   .++.++|||||||+||||++ |+.|+......+.   ..              .+..    ......
T Consensus       382 ~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~---~~--------------~~~~----~~~~~~  440 (495)
T 1opk_A          382 PIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQV---YE--------------LLEK----DYRMER  440 (495)
T ss_dssp             CGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGH---HH--------------HHHT----TCCCCC
T ss_pred             CcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHH---HH--------------HHHc----CCCCCC
Confidence                         13458999999999999999 9999876543211   10              1111    111223


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      +..+...+.+|+.+||+.||++||||.||++.|+.+.+.
T Consensus       441 ~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~~  479 (495)
T 1opk_A          441 PEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE  479 (495)
T ss_dssp             CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCSS
T ss_pred             CCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHhc
Confidence            444556789999999999999999999999999988654

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=5.8e-35  Score=310.41  Aligned_cols=222  Identities=23%  Similarity=0.398  Sum_probs=173.7

Q ss_pred             ceEEEEEE---------CCeEEEEEEcc--------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCC
Q 047629          343 KSVYRATI---------DGKVLAVKKIK--------EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGS  404 (615)
Q Consensus       343 ~~Vy~~~~---------~g~~vAvK~~~--------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~Gs  404 (615)
                      |.||+|..         ++..||||+++        +.+.+|+++|+++ +||||+++++++.+. +..++||||+++|+
T Consensus        95 g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~-~~~~lv~e~~~~g~  173 (370)
T 2psq_A           95 GQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD-GPLYVIVEYASKGN  173 (370)
T ss_dssp             SEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS-SSCEEEEECCTTCB
T ss_pred             eeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC-CCEEEEEEcCCCCC
Confidence            58999985         24679999986        2477899999999 899999999998754 47999999999999


Q ss_pred             HHHhhccCCCCCCC------CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCC
Q 047629          405 LDKWLHPKSKSSSS------SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA  478 (615)
Q Consensus       405 L~~~L~~~~~~~~~------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  478 (615)
                      |.+++.........      ......+++.+++.++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++
T Consensus       174 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a  250 (370)
T 2psq_A          174 LREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLVTENNVMKIADFGLA  250 (370)
T ss_dssp             HHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCSSC
T ss_pred             HHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---eeccccchhhEEECCCCCEEEccccCC
Confidence            99999865421000      000123899999999999999999999998   999999999999999999999999998


Q ss_pred             CCCC-------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHH
Q 047629          479 APAT-------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEK  532 (615)
Q Consensus       479 ~~~~-------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~  532 (615)
                      +...                         ..++.++|||||||++|||++ |+.||......+..   .           
T Consensus       251 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~~~---~-----------  316 (370)
T 2psq_A          251 RDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELF---K-----------  316 (370)
T ss_dssp             EETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHH---H-----------
T ss_pred             cccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHH---H-----------
Confidence            6431                         114568999999999999999 99998764422111   0           


Q ss_pred             HHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          533 REERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       533 ~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                         .+.....    ...+......+.+++..||+.||.+||++.|+++.|+.+....
T Consensus       317 ---~~~~~~~----~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~~  366 (370)
T 2psq_A          317 ---LLKEGHR----MDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLT  366 (370)
T ss_dssp             ---HHHTTCC----CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             ---HHhcCCC----CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence               1111111    1233444556899999999999999999999999999886543

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=5.6e-35  Score=326.94  Aligned_cols=208  Identities=23%  Similarity=0.305  Sum_probs=166.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||++..  +|+.||||.++       +.+.+|+++|++++|||||++++++.+. +.++||||||++|+|.++|....
T Consensus       171 g~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~-~~~~iv~E~~~gg~L~~~i~~~~  249 (573)
T 3uto_A          171 GVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDD-NEMVMIYEFMSGGELFEKVADEH  249 (573)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECS-SEEEEEEECCCCCBHHHHHTCTT
T ss_pred             eEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEEC-CEEEEEEeecCCCcHHHHHHHhC
Confidence            58999997  79999999885       3477899999999999999999998754 58999999999999999997543


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC--CcEEEeecCCCCCCC---------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR--FKAKIANFSLAAPAT---------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~--~~~kl~DFGla~~~~---------  482 (615)
                      .         .|++.++..++.||+.||+|||+++   |+||||||+|||++.+  +.+||+|||+|+...         
T Consensus       250 ~---------~l~e~~~~~~~~qi~~al~ylH~~~---iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~~~~~  317 (573)
T 3uto_A          250 N---------KMSEDEAVEYMRQVCKGLCHMHENN---YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTT  317 (573)
T ss_dssp             S---------CEEHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSEEEEEC
T ss_pred             C---------CCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCChhhccccCCCCCCEEEeeccceeEccCCCceeeeE
Confidence            3         3899999999999999999999998   9999999999999864  899999999997542         


Q ss_pred             -------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          483 -------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       483 -------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                   ..++.++||||+||++|||++|+.||......+.   .   ..           +.. .+..+....
T Consensus       318 GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~---~---~~-----------i~~-~~~~~~~~~  379 (573)
T 3uto_A          318 GTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDET---L---RN-----------VKS-CDWNMDDSA  379 (573)
T ss_dssp             SSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHH---H---HH-----------HHT-TCCCCCSGG
T ss_pred             ECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHH---H---HH-----------HHh-CCCCCCccc
Confidence                         1245689999999999999999999975442111   1   10           110 111111111


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .......+.+|+.+||+.||.+|||+.|++++
T Consensus       380 ~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~H  411 (573)
T 3uto_A          380 FSGISEDGKDFIRKLLLADPNTRMTIHQALEH  411 (573)
T ss_dssp             GTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             ccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            12233457899999999999999999999874

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=7.4e-35  Score=294.80  Aligned_cols=212  Identities=25%  Similarity=0.448  Sum_probs=173.7

Q ss_pred             ceEEEEEE-CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      |.||++.. +++.||||+++      +++.+|++++++++||||+++++++.+. +..++||||+++|+|.+++..... 
T Consensus        24 g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~~-  101 (269)
T 4hcu_A           24 GLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQ-APICLVFEFMEHGCLSDYLRTQRG-  101 (269)
T ss_dssp             CEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSS-SSEEEEEECCTTCBHHHHHHTTTT-
T ss_pred             cEEEEEEecCCCeEEEEEecccccCHHHHHHHHHHHHhCCCCCEeeEEEEEecC-CceEEEEEeCCCCcHHHHHHhcCc-
Confidence            58999998 78899999986      4588999999999999999999998754 479999999999999999976443 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------------  482 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------------  482 (615)
                              .+++..++.++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++...             
T Consensus       102 --------~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~  170 (269)
T 4hcu_A          102 --------LFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFP  170 (269)
T ss_dssp             --------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCC
T ss_pred             --------ccCHHHHHHHHHHHHHHHHHHHhCC---eecCCcchheEEEcCCCCEEeccccccccccccccccccCcccc
Confidence                    3899999999999999999999998   9999999999999999999999999986431             


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                 ..++.++||||||+++|||++ |+.|+......+   ..              ..+.....+    ..+
T Consensus       171 ~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~---~~--------------~~~~~~~~~----~~~  229 (269)
T 4hcu_A          171 VKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE---VV--------------EDISTGFRL----YKP  229 (269)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH---HH--------------HHHHTTCCC----CCC
T ss_pred             cccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHH---HH--------------HHHhcCccC----CCC
Confidence                       124568999999999999999 899987543211   00              011111111    122


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      ......+.+++..||+.||++||++.|+++.|+.+.++
T Consensus       230 ~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~  267 (269)
T 4hcu_A          230 RLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES  267 (269)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             CcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence            23345688999999999999999999999999988654

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=1e-34  Score=293.72  Aligned_cols=211  Identities=29%  Similarity=0.419  Sum_probs=167.0

Q ss_pred             ceEEEEEECCeEEEEEEcc-----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATIDGKVLAVKKIK-----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~-----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||+|...|+.||||.++           +.+.+|++++++++||||+++++++.+. +..++||||+++|+|.+++..
T Consensus        21 g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~   99 (271)
T 3dtc_A           21 GKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKE-PNLCLVMEFARGGPLNRVLSG   99 (271)
T ss_dssp             EEEEEEEETTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC---CEEEEECCTTEEHHHHHTS
T ss_pred             eEEEEEEEcCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecC-CceEEEEEcCCCCCHHHHhhc
Confidence            5899999999999999885           3467899999999999999999998754 478999999999999999964


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC--------CCcEEEeecCCCCCCCC
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS--------RFKAKIANFSLAAPATN  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~--------~~~~kl~DFGla~~~~~  483 (615)
                      .           .+++..+..++.|++.||.|||+++..+|+||||||+|||++.        ++.+||+|||+++....
T Consensus       100 ~-----------~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~  168 (271)
T 3dtc_A          100 K-----------RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHR  168 (271)
T ss_dssp             S-----------CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC------
T ss_pred             C-----------CCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCccccccc
Confidence            3           2899999999999999999999997666999999999999986        67899999999864321


Q ss_pred             ---------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          484 ---------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       484 ---------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                           .++.++||||||+++|||++|+.||........                    ......
T Consensus       169 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~--------------------~~~~~~  228 (271)
T 3dtc_A          169 TTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAV--------------------AYGVAM  228 (271)
T ss_dssp             -------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHH--------------------HHHHHT
T ss_pred             ccccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH--------------------HHhhhc
Confidence                                 245689999999999999999999975442110                    000111


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      .......+......+.+++.+||+.||.+|||+.|+++.|+.+
T Consensus       229 ~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l  271 (271)
T 3dtc_A          229 NKLALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI  271 (271)
T ss_dssp             SCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred             CCCCCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence            1122223444456789999999999999999999999999764

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=3.9e-35  Score=327.80  Aligned_cols=215  Identities=22%  Similarity=0.264  Sum_probs=168.3

Q ss_pred             ccccccccc----ceEEEEEE--CCeEEEEEEccHH----------HHHH---HHHHHhcCCCCcccEEEEEEcCCCcEE
Q 047629          334 NLSEHYSIG----KSVYRATI--DGKVLAVKKIKED----------VTEE---LRILQRINHANLVKLMGVSSDSQGNRF  394 (615)
Q Consensus       334 ~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~~----------~~~E---i~~l~~l~H~niv~l~g~~~~~~~~~~  394 (615)
                      +|.-...||    |.||++..  +|+.||||++++.          +.+|   +.+++.++|||||++++++.+. ..+|
T Consensus       190 df~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~-~~ly  268 (689)
T 3v5w_A          190 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTP-DKLS  268 (689)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECS-SEEE
T ss_pred             HeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEEC-CEEE
Confidence            444444555    58999998  7999999999632          2333   5666778999999999998764 4899


Q ss_pred             EEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEee
Q 047629          395 LVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIAN  474 (615)
Q Consensus       395 lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  474 (615)
                      |||||+++|+|.++|....          .+++.....++.||+.||+|||+++   ||||||||+|||||.++.+||+|
T Consensus       269 lVmEy~~GGdL~~~l~~~~----------~l~E~~a~~y~~qIl~aL~yLH~~g---IiHRDLKPeNILld~~G~vKL~D  335 (689)
T 3v5w_A          269 FILDLMNGGDLHYHLSQHG----------VFSEADMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISD  335 (689)
T ss_dssp             EEECCCCSCBHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECTTSCEEECC
T ss_pred             EEEecCCCCcHHHHHHhcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCchHHeEEeCCCCEEecc
Confidence            9999999999999997654          3899999999999999999999998   99999999999999999999999


Q ss_pred             cCCCCCCC----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHH
Q 047629          475 FSLAAPAT----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEK  532 (615)
Q Consensus       475 FGla~~~~----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~  532 (615)
                      ||+|+...                      ..++.++||||+||+||||++|+.||..........+..   .       
T Consensus       336 FGlA~~~~~~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~---~-------  405 (689)
T 3v5w_A          336 LGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDR---M-------  405 (689)
T ss_dssp             CTTCEECSSCCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHH---H-------
T ss_pred             cceeeecCCCCCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHH---h-------
Confidence            99996432                      125678999999999999999999997644322211110   0       


Q ss_pred             HHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCC-----HHHHHHH
Q 047629          533 REERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPN-----MAEVVFN  581 (615)
Q Consensus       533 ~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPs-----m~ev~~~  581 (615)
                         ...  ..+    .+|......+.+|+..|++.||.+|++     +.||.++
T Consensus       406 ---i~~--~~~----~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~H  450 (689)
T 3v5w_A          406 ---TLT--MAV----ELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKES  450 (689)
T ss_dssp             ---HHH--CCC----CCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTS
T ss_pred             ---hcC--CCC----CCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhcC
Confidence               001  111    233334456789999999999999998     6887764

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=3.1e-34  Score=298.68  Aligned_cols=228  Identities=21%  Similarity=0.298  Sum_probs=180.8

Q ss_pred             eeeeHHHHHHHccc----------cccccccc----ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCC
Q 047629          321 IVYEIEVIMESTMN----------LSEHYSIG----KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHA  377 (615)
Q Consensus       321 ~~~~~~~l~~at~~----------~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~  377 (615)
                      ..++++++..++..          |.....+|    |.||+|..  +|+.||||+++       +.+.+|+.++++++|+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~  102 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF  102 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence            45788888888865          33333455    58999997  69999999985       3478999999999999


Q ss_pred             CcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCC
Q 047629          378 NLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDI  457 (615)
Q Consensus       378 niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDl  457 (615)
                      ||+++++++... +..++||||+++|+|.+++...           .++|..+..++.|++.||.|||+++   |+||||
T Consensus       103 niv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~-----------~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dl  167 (321)
T 2c30_A          103 NVVEMYKSYLVG-EELWVLMEFLQGGALTDIVSQV-----------RLNEEQIATVCEAVLQALAYLHAQG---VIHRDI  167 (321)
T ss_dssp             TBCCEEEEEEET-TEEEEEECCCCSCBHHHHHTTC-----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCC
T ss_pred             CcceEEEEEEEC-CEEEEEEecCCCCCHHHHHHhc-----------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCC
Confidence            999999998764 4799999999999999998743           2899999999999999999999998   999999


Q ss_pred             CCCceeeCCCCcEEEeecCCCCCCC-----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCC
Q 047629          458 RTNNIQLDSRFKAKIANFSLAAPAT-----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENG  514 (615)
Q Consensus       458 k~~NILld~~~~~kl~DFGla~~~~-----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~  514 (615)
                      ||+|||++.++.+||+|||+++...                       ..++.++||||||+++|||++|+.||......
T Consensus       168 kp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~  247 (321)
T 2c30_A          168 KSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPV  247 (321)
T ss_dssp             SGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH
T ss_pred             CHHHEEECCCCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            9999999999999999999985432                       12456899999999999999999999754311


Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          515 KTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       515 ~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                         ...              ..+.....+.+.  .+......+.+++.+||+.||++|||+.|+++.-
T Consensus       248 ---~~~--------------~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp  296 (321)
T 2c30_A          248 ---QAM--------------KRLRDSPPPKLK--NSHKVSPVLRDFLERMLVRDPQERATAQELLDHP  296 (321)
T ss_dssp             ---HHH--------------HHHHHSSCCCCT--TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTSG
T ss_pred             ---HHH--------------HHHhcCCCCCcC--ccccCCHHHHHHHHHHccCChhhCcCHHHHhcCh
Confidence               111              112222222221  1223345688999999999999999999999864

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=2.8e-35  Score=321.30  Aligned_cols=214  Identities=24%  Similarity=0.398  Sum_probs=174.5

Q ss_pred             ceEEEEEE-CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      |.||+|.+ +++.||||+++      +.+.+|+++|++++||||+++++++.  +...++||||+++|+|.+++..... 
T Consensus       202 g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~--~~~~~lv~e~~~~g~L~~~l~~~~~-  278 (454)
T 1qcf_A          202 GEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVT--KEPIYIITEFMAKGSLLDFLKSDEG-  278 (454)
T ss_dssp             EEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHTTCCCTTBCCEEEEEC--SSSCEEEECCCTTCBHHHHHHSHHH-
T ss_pred             eEEEEEEECCccEEEEEEecCCCccHHHHHHHHHHHhhCCCCCEeeEEEEEe--CCccEEEEeecCCCcHHHHHHhccC-
Confidence            58999999 57899999986      45889999999999999999999985  3468999999999999999975431 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------------  482 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------------  482 (615)
                             ..+++..++.++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...             
T Consensus       279 -------~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~  348 (454)
T 1qcf_A          279 -------SKQPLPKLIDFSAQIAEGMAFIEQRN---YIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFP  348 (454)
T ss_dssp             -------HTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHHTTCSSSSC
T ss_pred             -------CCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCceeccCCCccc
Confidence                   13889999999999999999999998   9999999999999999999999999997532             


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                 ..++.++|||||||+||||++ |+.||......+   ...              .+..-..    ...+
T Consensus       349 ~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~---~~~--------------~i~~~~~----~~~~  407 (454)
T 1qcf_A          349 IKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPE---VIR--------------ALERGYR----MPRP  407 (454)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH---HHH--------------HHHHTCC----CCCC
T ss_pred             ccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHH---HHH--------------HHHcCCC----CCCC
Confidence                       124568999999999999999 999997543211   110              0111111    1123


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchh
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE  590 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~  590 (615)
                      ...+..+.+|+..||+.||++||||++|++.|+.+....+
T Consensus       408 ~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~~~  447 (454)
T 1qcf_A          408 ENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTATE  447 (454)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSSSC
T ss_pred             CCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhccc
Confidence            3445678999999999999999999999999998876543

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=2.1e-34  Score=291.19  Aligned_cols=213  Identities=25%  Similarity=0.406  Sum_probs=171.7

Q ss_pred             ceEEEEEE-CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      |.||++.. ++..||||.++      .++.+|++++.+++||||+++++++.+ ++..++||||+++|+|.+++..... 
T Consensus        22 g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~-   99 (268)
T 3sxs_A           22 GVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSK-EYPIYIVTEYISNGCLLNYLRSHGK-   99 (268)
T ss_dssp             EEEEEEEETTTEEEEEEEECBTTBCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSSEEEEEECCTTCBHHHHHHHHGG-
T ss_pred             ceEEEEEecCceeEEEEEeccCCCcHHHHHHHHHHHHhCCCCCEeeEEEEEcc-CCceEEEEEccCCCcHHHHHHHcCC-
Confidence            58999988 56789999985      458899999999999999999999865 4479999999999999999976432 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------------  483 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------------  483 (615)
                              .+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++....            
T Consensus       100 --------~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~  168 (268)
T 3sxs_A          100 --------GLEPSQLLEMCYDVCEGMAFLESHQ---FIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFP  168 (268)
T ss_dssp             --------GCCHHHHHHHHHHHHHHHHHHHHTT---EEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEECCSCCCC
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCcCcceEEECCCCCEEEccCccceecchhhhhcccCCCcC
Confidence                    3899999999999999999999998   99999999999999999999999999864321            


Q ss_pred             ------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          484 ------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       484 ------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  .++.++||||||+++|||++ |+.|+......+..                 ..+.....+    ..+
T Consensus       169 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~-----------------~~~~~~~~~----~~~  227 (268)
T 3sxs_A          169 VKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVV-----------------LKVSQGHRL----YRP  227 (268)
T ss_dssp             GGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHH-----------------HHHHTTCCC----CCC
T ss_pred             cccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHH-----------------HHHHcCCCC----CCC
Confidence                        13568999999999999999 99998754421100                 011111111    112


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      ......+.+++..||+.||.+|||+.|+++.|+.+.+..
T Consensus       228 ~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~~  266 (268)
T 3sxs_A          228 HLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREKD  266 (268)
T ss_dssp             TTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC--
T ss_pred             CcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhcc
Confidence            223346889999999999999999999999999887653

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=299.08  Aligned_cols=214  Identities=24%  Similarity=0.411  Sum_probs=172.3

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||++..  +|+.||+|++.       +.+.+|++++++++||||+++++++.+. +..++||||+++|+|.+++....
T Consensus        24 g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~  102 (310)
T 3s95_A           24 GQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKD-KRLNFITEYIKGGTLRGIIKSMD  102 (310)
T ss_dssp             EEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEET-TEEEEEEECCTTCBHHHHHHHCC
T ss_pred             EEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecC-CeeEEEEEecCCCcHHHHHHhcc
Confidence            58999998  58999999874       3578999999999999999999998764 47999999999999999998744


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                      .         .++|.++..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...           
T Consensus       103 ~---------~~~~~~~~~i~~qi~~al~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  170 (310)
T 3s95_A          103 S---------QYPWSQRVSFAKDIASGMAYLHSMN---IIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRS  170 (310)
T ss_dssp             T---------TSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEECTTSCEEECCCTTCEECC-----------
T ss_pred             C---------CCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCcCeEEECCCCCEEEeecccceeccccccccccccc
Confidence            3         3899999999999999999999998   9999999999999999999999999985421           


Q ss_pred             --------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHH
Q 047629          483 --------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREER  536 (615)
Q Consensus       483 --------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  536 (615)
                                                ..++.++||||||+++|||++|+.|+............ ..          ...
T Consensus       171 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~-~~----------~~~  239 (310)
T 3s95_A          171 LKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGL-NV----------RGF  239 (310)
T ss_dssp             ---------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSB-CH----------HHH
T ss_pred             ccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhh-hh----------hcc
Confidence                                      12467899999999999999999988654322110000 00          001


Q ss_pred             HhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          537 LRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       537 ~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      .....        +......+.+++.+||+.||++|||+.|+++.|+.+...
T Consensus       240 ~~~~~--------~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~  283 (310)
T 3s95_A          240 LDRYC--------PPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMH  283 (310)
T ss_dssp             HHHTC--------CTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ccccC--------CCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence            11111        122223478999999999999999999999999988755

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=3.9e-35  Score=300.90  Aligned_cols=229  Identities=24%  Similarity=0.373  Sum_probs=173.5

Q ss_pred             ceEEEEEE------CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCC-CcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI------DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQ-GNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~------~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~-~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||++.+      +|+.||||+++       +.+.+|++++++++||||+++++++...+ ...++||||+++|+|.++
T Consensus        24 g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~  103 (295)
T 3ugc_A           24 GSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDY  103 (295)
T ss_dssp             EEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCEEEEECCTTCBHHHH
T ss_pred             EEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceEEEEEeCCCCCHHHH
Confidence            58999985      58999999985       35788999999999999999999986432 358999999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-----
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-----  483 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-----  483 (615)
                      +.....         .+++.+++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++....     
T Consensus       104 l~~~~~---------~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  171 (295)
T 3ugc_A          104 LQKHKE---------RIDHIKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFF  171 (295)
T ss_dssp             HHHCGG---------GCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCCSCC---------
T ss_pred             HHhccc---------ccCHHHHHHHHHHHHHHHHHHhcCC---cccCCCCHhhEEEcCCCeEEEccCcccccccCCccee
Confidence            976542         3899999999999999999999998   99999999999999999999999999965321     


Q ss_pred             ---------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          484 ---------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       484 ---------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                           .++.++||||||+++|||++|+.|+......    ......... ........+.+.+.
T Consensus       172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~  246 (295)
T 3ugc_A          172 KVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAE----FMRMIGNDK-QGQMIVFHLIELLK  246 (295)
T ss_dssp             ----CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHH----HHHHHCTTC-CTHHHHHHHHHHHH
T ss_pred             eeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHH----HHhhhcCcc-ccchhHHHHHHHHh
Confidence                                 1356899999999999999999987642210    000000000 00000011111111


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      .......+......+.+++..||+.||++|||++|+++.|+.+.+.
T Consensus       247 ~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~  292 (295)
T 3ugc_A          247 NNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDN  292 (295)
T ss_dssp             TTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             ccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHh
Confidence            1222233445556789999999999999999999999999988654

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=4e-35  Score=309.22  Aligned_cols=235  Identities=26%  Similarity=0.387  Sum_probs=180.7

Q ss_pred             Hccccccccccc----ceEEEEEE-------CCeEEEEEEccH--------HHHHHHHHHHhc-CCCCcccEEEEEEcCC
Q 047629          331 STMNLSEHYSIG----KSVYRATI-------DGKVLAVKKIKE--------DVTEELRILQRI-NHANLVKLMGVSSDSQ  390 (615)
Q Consensus       331 at~~~~~~~~iG----~~Vy~~~~-------~g~~vAvK~~~~--------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~  390 (615)
                      ..++|.....+|    |.||+|.+       +++.||||+++.        .+.+|++++.++ +||||+++++++.+.+
T Consensus        20 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~   99 (359)
T 3vhe_A           20 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG   99 (359)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTT
T ss_pred             cccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecCC
Confidence            344555555555    58999984       358999999852        478899999999 8999999999988766


Q ss_pred             CcEEEEEeecCCCCHHHhhccCCCCCCC----------------------------------------------------
Q 047629          391 GNRFLVYEYAENGSLDKWLHPKSKSSSS----------------------------------------------------  418 (615)
Q Consensus       391 ~~~~lV~E~~~~GsL~~~L~~~~~~~~~----------------------------------------------------  418 (615)
                      +..++||||+++|+|.+++.........                                                    
T Consensus       100 ~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (359)
T 3vhe_A          100 GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEE  179 (359)
T ss_dssp             SCCEEEEECCTTEEHHHHHHTTTTSBCSCC--------------------------------------------------
T ss_pred             CceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhhhc
Confidence            5689999999999999999865421000                                                    


Q ss_pred             ----CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-----------
Q 047629          419 ----SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-----------  483 (615)
Q Consensus       419 ----~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-----------  483 (615)
                          ......+++..++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++....           
T Consensus       180 ~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~  256 (359)
T 3vhe_A          180 EAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDAR  256 (359)
T ss_dssp             ----CTTTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CE
T ss_pred             ccccchhccccCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccC
Confidence                000112899999999999999999999998   99999999999999999999999999875311           


Q ss_pred             --------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          484 --------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       484 --------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                    .++.++||||||+++|||++ |+.||......+..  ..              .+.....+.    
T Consensus       257 ~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~--~~--------------~~~~~~~~~----  316 (359)
T 3vhe_A          257 LPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEF--CR--------------RLKEGTRMR----  316 (359)
T ss_dssp             ECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHH--HH--------------HHHHTCCCC----
T ss_pred             CCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHH--HH--------------HHHcCCCCC----
Confidence                          13568999999999999999 99999765432211  10              111111122    


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      .+......+.+++..||+.||.+|||+.|++++|+.+.+.
T Consensus       317 ~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~  356 (359)
T 3vhe_A          317 APDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  356 (359)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHH
Confidence            2233344688999999999999999999999999988754

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=2.6e-34  Score=295.10  Aligned_cols=218  Identities=25%  Similarity=0.400  Sum_probs=167.9

Q ss_pred             ceEEEEEECCeEEEEEEccH----HHHHHHHHHHh--cCCCCcccEEEEEEcC---CCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATIDGKVLAVKKIKE----DVTEELRILQR--INHANLVKLMGVSSDS---QGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~~----~~~~Ei~~l~~--l~H~niv~l~g~~~~~---~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||+|..+|+.||||+++.    .+..|.+++..  ++||||+++++++...   ....++||||+++|+|.+++... 
T Consensus        22 g~V~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~-  100 (301)
T 3q4u_A           22 GEVWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLT-  100 (301)
T ss_dssp             EEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEEECCCTTCBHHHHHTTC-
T ss_pred             cEEEEEEECCEEEEEEEeccccchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEehhhccCCCHHHHHhhc-
Confidence            58999999999999999863    45667888777  7999999999987542   22479999999999999999643 


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHH--------hCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMH--------EHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--  483 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH--------~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--  483 (615)
                                .+++..++.++.|++.||+|||        +++   |+||||||+|||++.++.+||+|||+++....  
T Consensus       101 ----------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~  167 (301)
T 3q4u_A          101 ----------TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPA---IAHRDLKSKNILVKKNGQCCIADLGLAVMHSQST  167 (301)
T ss_dssp             ----------CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCE---EECSCCCGGGEEECTTSCEEECCCTTCEEEETTT
T ss_pred             ----------ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCC---eecCCCChHhEEEcCCCCEEEeeCCCeeeccccc
Confidence                      2899999999999999999999        665   99999999999999999999999999843210  


Q ss_pred             -------------------------------CCCCcccchhHHHHHHHHHcC----------CCCCCCCCCChhHHHHHH
Q 047629          484 -------------------------------DVMPKFDVFAFGVVLLELLSG----------KKATRTTENGKTAVLWKE  522 (615)
Q Consensus       484 -------------------------------~~~~k~DV~SfGvvl~ElltG----------~~p~~~~~~~~~~~l~~~  522 (615)
                                                     .+++++|||||||++|||++|          +.||..........  ..
T Consensus       168 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~--~~  245 (301)
T 3q4u_A          168 NQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSF--ED  245 (301)
T ss_dssp             TEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCH--HH
T ss_pred             ccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcch--hh
Confidence                                           112478999999999999999          77776543221110  00


Q ss_pred             HHHHHhHHHHHHHHHhhhcCCcCCC-CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          523 IREVLKVEEKREERLRNWMDPNLES-FYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~dp~l~~-~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      +..         ........+.+.. .++......+.+++.+||+.||++|||+.||++.|+.+
T Consensus       246 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          246 MRK---------VVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI  300 (301)
T ss_dssp             HHH---------HHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred             hhH---------HHhccCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence            110         1111112222221 12335677899999999999999999999999999875

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=6.9e-35  Score=304.25  Aligned_cols=212  Identities=20%  Similarity=0.390  Sum_probs=169.7

Q ss_pred             ceEEEEEE--CCe----EEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGK----VLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~----~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||+|..  +|+    .||+|.++        +.+.+|+.++++++||||++++++|.+.  ..++|+||+++|+|.++
T Consensus        29 g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--~~~~v~e~~~~g~L~~~  106 (327)
T 3poz_A           29 GTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS--TVQLITQLMPFGCLLDY  106 (327)
T ss_dssp             EEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESS--SEEEEEECCTTCBHHHH
T ss_pred             eEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecC--CeEEEEEecCCCcHHHH
Confidence            58999997  444    36888874        3578899999999999999999999753  58899999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      +.....         .+++..++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...      
T Consensus       107 l~~~~~---------~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  174 (327)
T 3poz_A          107 VREHKD---------NIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY  174 (327)
T ss_dssp             HHHSTT---------SCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTCC--
T ss_pred             HHhcCC---------CCCHHHHHHHHHHHHHHHHHHhhCC---eeCCCCChheEEECCCCCEEEccCcceeEccCCcccc
Confidence            987543         3899999999999999999999998   9999999999999999999999999985321      


Q ss_pred             -------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          483 -------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       483 -------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                         ..++.++|||||||++|||++ |+.||......+..       .          .+..   
T Consensus       175 ~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~-------~----------~~~~---  234 (327)
T 3poz_A          175 HAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEIS-------S----------ILEK---  234 (327)
T ss_dssp             -----CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHH-------H----------HHHT---
T ss_pred             cccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHH-------H----------HHHc---
Confidence                               124568999999999999999 99999765432211       0          0111   


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                       ......+......+.+++.+||+.||.+||+|+|+++.|+.+....
T Consensus       235 -~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~~  280 (327)
T 3poz_A          235 -GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDP  280 (327)
T ss_dssp             -TCCCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTSH
T ss_pred             -CCCCCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhhh
Confidence             1111233445567899999999999999999999999999886553

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=9.6e-35  Score=308.32  Aligned_cols=223  Identities=28%  Similarity=0.384  Sum_probs=174.0

Q ss_pred             ceEEEEEE-------CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI-------DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~-------~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||+|.+       +++.||||+++        ..+.+|+.++++++|+||+++++++.+. +..++||||+++|+|.+
T Consensus        85 g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~-~~~~lv~e~~~~g~L~~  163 (367)
T 3l9p_A           85 GEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQS-LPRFILLELMAGGDLKS  163 (367)
T ss_dssp             SCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS-SSCEEEEECCTTEEHHH
T ss_pred             EEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecC-CCCEEEEEeCCCCCHHH
Confidence            58999985       35689999985        2477899999999999999999998754 47899999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC---cEEEeecCCCCCC---
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF---KAKIANFSLAAPA---  481 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~---~~kl~DFGla~~~---  481 (615)
                      ++........   ....+++.+++.++.|++.||+|||+++   |+||||||+|||++.++   .+||+|||+++..   
T Consensus       164 ~l~~~~~~~~---~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~  237 (367)
T 3l9p_A          164 FLRETRPRPS---QPSSLAMLDLLHVARDIACGCQYLEENH---FIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRA  237 (367)
T ss_dssp             HHHHHSCCSS---SCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHH
T ss_pred             HHHhhccccC---ccccccHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChhhEEEecCCCCceEEECCCccccccccc
Confidence            9976542111   1124899999999999999999999998   99999999999999554   5999999998521   


Q ss_pred             ----------------------CCCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHh
Q 047629          482 ----------------------TNDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLR  538 (615)
Q Consensus       482 ----------------------~~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  538 (615)
                                            ...++.++|||||||++|||++ |+.||......+   ..              ..+.
T Consensus       238 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~---~~--------------~~i~  300 (367)
T 3l9p_A          238 GYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQE---VL--------------EFVT  300 (367)
T ss_dssp             SSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH---HH--------------HHHH
T ss_pred             cccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH---HH--------------HHHH
Confidence                                  1124668999999999999998 999987543211   00              0111


Q ss_pred             hhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchhhhh
Q 047629          539 NWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTETLE  593 (615)
Q Consensus       539 ~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~~~~  593 (615)
                      ....    ...+......+.+|+..||+.||.+||++.||++.|+.+.+......
T Consensus       301 ~~~~----~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~~~~~  351 (367)
T 3l9p_A          301 SGGR----MDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDPDVIN  351 (367)
T ss_dssp             TTCC----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCHHHHT
T ss_pred             cCCC----CCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhChhhcc
Confidence            1111    12233444568999999999999999999999999998887765443

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=2.6e-34  Score=292.78  Aligned_cols=211  Identities=25%  Similarity=0.408  Sum_probs=172.3

Q ss_pred             ceEEEEEE-CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      |.||++.. ++..||||+++      +++.+|++++.+++|+||+++++++.+ ++..++||||+++|+|.+++..... 
T Consensus        38 g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~-  115 (283)
T 3gen_A           38 GVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK-QRPIFIITEYMANGCLLNYLREMRH-  115 (283)
T ss_dssp             EEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECS-SSSEEEEECCCTTCBHHHHHHCGGG-
T ss_pred             ceEEEEEEcCCCeEEEEEecCCCCCHHHHHHHHHHHhcCCCCCEeeEEEEEec-CCCeEEEEeccCCCcHHHHHHHhcc-
Confidence            58999998 56789999986      458899999999999999999999865 4479999999999999999976432 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------------  482 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------------  482 (615)
                              .+++.+++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...             
T Consensus       116 --------~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~  184 (283)
T 3gen_A          116 --------RFQTQQLLEMCKDVCEAMEYLESKQ---FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFP  184 (283)
T ss_dssp             --------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHSTTSTTSC
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCccceEEEcCCCCEEEccccccccccccccccccCCccC
Confidence                    3899999999999999999999998   9999999999999999999999999986431             


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                 ..++.++||||||+++|||++ |+.||......+.                 ...+.....+    ..+
T Consensus       185 ~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~-----------------~~~~~~~~~~----~~~  243 (283)
T 3gen_A          185 VRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSET-----------------AEHIAQGLRL----YRP  243 (283)
T ss_dssp             GGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHH-----------------HHHHHTTCCC----CCC
T ss_pred             cccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHH-----------------HHHHhcccCC----CCC
Confidence                       124568999999999999998 9999875442110                 0111111111    122


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhccc
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~  587 (615)
                      ......+.+++.+||+.||.+|||++|+++.|..+..
T Consensus       244 ~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~  280 (283)
T 3gen_A          244 HLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMD  280 (283)
T ss_dssp             TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhh
Confidence            2334568899999999999999999999999987764

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=1.6e-34  Score=315.28  Aligned_cols=214  Identities=28%  Similarity=0.424  Sum_probs=173.0

Q ss_pred             ceEEEEEEC-CeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATID-GKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~~-g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      |.||+|.+. +..||||+++      +++.+|+++|++++||||+++++++.+  +..++||||+++|+|.+++..... 
T Consensus       198 g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~~iv~e~~~~gsL~~~l~~~~~-  274 (452)
T 1fmk_A          198 GEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE--EPIYIVTEYMSKGSLLDFLKGETG-  274 (452)
T ss_dssp             CEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS--SSCEEEECCCTTCBHHHHHSHHHH-
T ss_pred             eEEEEEEECCCceEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEcC--CceEEEehhhcCCCHHHHHHhcCC-
Confidence            589999994 5789999986      468899999999999999999999864  468999999999999999975321 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------------  483 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------------  483 (615)
                             ..+++.+++.++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++....            
T Consensus       275 -------~~~~~~~~~~i~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~  344 (452)
T 1fmk_A          275 -------KYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP  344 (452)
T ss_dssp             -------TTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCCTTC--------------CC
T ss_pred             -------CCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChhhEEECCCCCEEECCCccceecCCCceecccCCccc
Confidence                   13899999999999999999999998   99999999999999999999999999975421            


Q ss_pred             ------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          484 ------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       484 ------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  .++.++|||||||++|||++ |+.|+......+   ..    .          .+..-.    ....+
T Consensus       345 ~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~---~~----~----------~i~~~~----~~~~~  403 (452)
T 1fmk_A          345 IKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE---VL----D----------QVERGY----RMPCP  403 (452)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH---HH----H----------HHHTTC----CCCCC
T ss_pred             ccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHH---HH----H----------HHHcCC----CCCCC
Confidence                        24568999999999999999 999987543211   00    0          111111    11233


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchh
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE  590 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~  590 (615)
                      ......+.+++..||+.||++|||++++++.|+.+..+.+
T Consensus       404 ~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~  443 (452)
T 1fmk_A          404 PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE  443 (452)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSC
T ss_pred             CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccCC
Confidence            4455678999999999999999999999999998876543

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=1.8e-34  Score=291.28  Aligned_cols=216  Identities=21%  Similarity=0.343  Sum_probs=173.3

Q ss_pred             ceEEEEEECCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCC-CcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQ-GNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~-~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||+|..+|+.||||+++         +.+.+|+.++++++||||+++++++.+.+ +..++||||+++|+|.+++...
T Consensus        24 g~V~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~  103 (271)
T 3kmu_A           24 GELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEG  103 (271)
T ss_dssp             EEEEEEEETTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEEECCTTCBHHHHHHSC
T ss_pred             ceEEEEEECCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeeecccCCCcHHHHHhhc
Confidence            5899999999999999985         24788999999999999999999987542 4689999999999999999865


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC--------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND--------  484 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~--------  484 (615)
                      ...        .+++.+++.++.|++.||.|||+++ ++++||||||+|||++.++.+|++|||++......        
T Consensus       104 ~~~--------~~~~~~~~~i~~qi~~~l~~lH~~~-~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~t~~y  174 (271)
T 3kmu_A          104 TNF--------VVDQSQAVKFALDMARGMAFLHTLE-PLIPRHALNSRSVMIDEDMTARISMADVKFSFQSPGRMYAPAW  174 (271)
T ss_dssp             SSC--------CCCHHHHHHHHHHHHHHHHHHTTSS-SCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTSCTTCBSCGGG
T ss_pred             ccC--------CCCHHHHHHHHHHHHHHHHHHhcCC-CceecCCCccceEEEcCCcceeEEeccceeeecccCccCCccc
Confidence            431        3899999999999999999999874 45999999999999999999999998886443111        


Q ss_pred             ----------C---CCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCCh
Q 047629          485 ----------V---MPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPI  551 (615)
Q Consensus       485 ----------~---~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~  551 (615)
                                .   +.++||||||+++|||++|+.||......+.      .          .........+.+    +.
T Consensus       175 ~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~------~----------~~~~~~~~~~~~----~~  234 (271)
T 3kmu_A          175 VAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEI------G----------MKVALEGLRPTI----PP  234 (271)
T ss_dssp             SCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHH------H----------HHHHHSCCCCCC----CT
T ss_pred             cChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHH------H----------HHHHhcCCCCCC----CC
Confidence                      1   1269999999999999999999975432110      0          011112222322    33


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhccc
Q 047629          552 DGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       552 ~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~  587 (615)
                      .....+.+++..||+.||++|||++|+++.|+.+.+
T Consensus       235 ~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~  270 (271)
T 3kmu_A          235 GISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD  270 (271)
T ss_dssp             TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence            444568999999999999999999999999998764

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=6.9e-34  Score=292.69  Aligned_cols=205  Identities=20%  Similarity=0.361  Sum_probs=167.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||++..  +|+.||||++.       +.+.+|+.++++++||||+++++++... +..++||||+++|+|.+++... 
T Consensus        34 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~~-  111 (297)
T 3fxz_A           34 GTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVG-DELWVVMEYLAGGSLTDVVTET-  111 (297)
T ss_dssp             EEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEET-TEEEEEEECCTTCBHHHHHHHS-
T ss_pred             eEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEEC-CEEEEEEECCCCCCHHHHHhhc-
Confidence            58999986  78999999985       3478899999999999999999998764 4799999999999999999754 


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                                .+++.++..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...           
T Consensus       112 ----------~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g  178 (297)
T 3fxz_A          112 ----------CMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVG  178 (297)
T ss_dssp             ----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCS
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHhCC---ceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccccCCccC
Confidence                      2889999999999999999999998   9999999999999999999999999985432           


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  ..++.++|||||||++|||++|+.||........      ...           +.....+.+  ..+
T Consensus       179 t~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~------~~~-----------~~~~~~~~~--~~~  239 (297)
T 3fxz_A          179 TPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRA------LYL-----------IATNGTPEL--QNP  239 (297)
T ss_dssp             CGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH------HHH-----------HHHHCSCCC--SCG
T ss_pred             CcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH------HHH-----------HHhCCCCCC--CCc
Confidence                        1246789999999999999999999975432111      000           000111111  223


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ......+.+++.+||+.||++|||+.|+++.
T Consensus       240 ~~~~~~~~~li~~~l~~dp~~Rps~~ell~h  270 (297)
T 3fxz_A          240 EKLSAIFRDFLNRCLEMDVEKRGSAKELLQH  270 (297)
T ss_dssp             GGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             cccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence            3445568999999999999999999999885

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=2.8e-34  Score=300.64  Aligned_cols=233  Identities=30%  Similarity=0.448  Sum_probs=176.6

Q ss_pred             cccccccccc----ceEEEEEECC-------eEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcE
Q 047629          333 MNLSEHYSIG----KSVYRATIDG-------KVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNR  393 (615)
Q Consensus       333 ~~~~~~~~iG----~~Vy~~~~~g-------~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~  393 (615)
                      ++|.....+|    |.||+|...+       +.||||.++        +.+.+|++++++++||||+++++++.+. +..
T Consensus        47 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~  125 (343)
T 1luf_A           47 NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVG-KPM  125 (343)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS-SSC
T ss_pred             HHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccC-Cce
Confidence            3444444454    5899999743       889999985        2477899999999999999999998754 478


Q ss_pred             EEEEeecCCCCHHHhhccCCCCCC--------------CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCC
Q 047629          394 FLVYEYAENGSLDKWLHPKSKSSS--------------SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT  459 (615)
Q Consensus       394 ~lV~E~~~~GsL~~~L~~~~~~~~--------------~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~  459 (615)
                      ++||||+++|+|.+++........              .......+++.+++.++.|++.||.|||+++   |+||||||
T Consensus       126 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp  202 (343)
T 1luf_A          126 CLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK---FVHRDLAT  202 (343)
T ss_dssp             EEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSG
T ss_pred             EEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCc
Confidence            999999999999999976432100              0000124899999999999999999999998   99999999


Q ss_pred             CceeeCCCCcEEEeecCCCCCCC-------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCC
Q 047629          460 NNIQLDSRFKAKIANFSLAAPAT-------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTEN  513 (615)
Q Consensus       460 ~NILld~~~~~kl~DFGla~~~~-------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~  513 (615)
                      +|||++.++.+||+|||+++...                         ..++.++||||||+++|||++ |+.|+.....
T Consensus       203 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~  282 (343)
T 1luf_A          203 RNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAH  282 (343)
T ss_dssp             GGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH
T ss_pred             ceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCCh
Confidence            99999999999999999874321                         124568999999999999999 9999875432


Q ss_pred             ChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchh
Q 047629          514 GKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE  590 (615)
Q Consensus       514 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~  590 (615)
                      .+   .    ..          .+.+   ... ...+......+.+++..||+.||.+||++.|+++.|+.+.+..+
T Consensus       283 ~~---~----~~----------~~~~---~~~-~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~  338 (343)
T 1luf_A          283 EE---V----IY----------YVRD---GNI-LACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERAE  338 (343)
T ss_dssp             HH---H----HH----------HHHT---TCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC---
T ss_pred             HH---H----HH----------HHhC---CCc-CCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhh
Confidence            11   0    00          0111   111 12233444568999999999999999999999999998876543

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=1.1e-33  Score=288.85  Aligned_cols=212  Identities=31%  Similarity=0.498  Sum_probs=169.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      |.||+|..  +++.||||++.              +.+.+|++++++++|+||+++++++.+   ..++||||+++|+|.
T Consensus        33 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~lv~e~~~~~~L~  109 (287)
T 4f0f_A           33 GLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHN---PPRMVMEFVPCGDLY  109 (287)
T ss_dssp             SCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETT---TTEEEEECCTTCBHH
T ss_pred             eeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecC---CCeEEEEecCCCCHH
Confidence            58999998  78999999884              457889999999999999999998753   237999999999999


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCc-----EEEeecCCCCCC
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK-----AKIANFSLAAPA  481 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~-----~kl~DFGla~~~  481 (615)
                      +++.....         .+++..++.++.|++.||+|||+++ ++|+||||||+|||++.++.     +||+|||+++..
T Consensus       110 ~~l~~~~~---------~~~~~~~~~~~~~l~~~l~~lH~~~-~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~  179 (287)
T 4f0f_A          110 HRLLDKAH---------PIKWSVKLRLMLDIALGIEYMQNQN-PPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQS  179 (287)
T ss_dssp             HHHHCTTS---------CCCHHHHHHHHHHHHHHHHHHHTSS-SCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCBCC
T ss_pred             HHHhcccC---------CccHHHHHHHHHHHHHHHHHHHhCC-CCeecCCCCcceEEEeccCCCCceeEEeCCCCccccc
Confidence            99876543         3899999999999999999999985 34999999999999988776     999999998643


Q ss_pred             CC----------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhh
Q 047629          482 TN----------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRN  539 (615)
Q Consensus       482 ~~----------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  539 (615)
                      ..                      .++.++||||||+++|||++|+.||.......... ..             .....
T Consensus       180 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~-~~-------------~~~~~  245 (287)
T 4f0f_A          180 VHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKF-IN-------------MIREE  245 (287)
T ss_dssp             SSCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHH-HH-------------HHHHS
T ss_pred             cccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHH-HH-------------HHhcc
Confidence            21                      13457899999999999999999997654332211 00             01111


Q ss_pred             hcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          540 WMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       540 ~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      ...+    ..+......+.+++..||+.||.+|||+.|+++.|+.+
T Consensus       246 ~~~~----~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l  287 (287)
T 4f0f_A          246 GLRP----TIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL  287 (287)
T ss_dssp             CCCC----CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred             CCCC----CCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence            1222    23344455689999999999999999999999999864

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=6.5e-34  Score=303.51  Aligned_cols=223  Identities=25%  Similarity=0.384  Sum_probs=174.2

Q ss_pred             ceEEEEEEC---------CeEEEEEEcc--------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCC
Q 047629          343 KSVYRATID---------GKVLAVKKIK--------EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGS  404 (615)
Q Consensus       343 ~~Vy~~~~~---------g~~vAvK~~~--------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~Gs  404 (615)
                      |.||+|...         ++.||||+++        ..+.+|+++++++ +||||+++++++.+ ++..++||||+++|+
T Consensus        83 g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~-~~~~~lv~e~~~~g~  161 (382)
T 3tt0_A           83 GQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ-DGPLYVIVEYASKGN  161 (382)
T ss_dssp             EEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSSCEEEEECCTTCB
T ss_pred             eEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeecc-CCceEEEEEecCCCc
Confidence            589999852         3679999985        3477899999999 99999999999875 447899999999999


Q ss_pred             HHHhhccCCCCCC------CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCC
Q 047629          405 LDKWLHPKSKSSS------SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA  478 (615)
Q Consensus       405 L~~~L~~~~~~~~------~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  478 (615)
                      |.+++........      .......+++.+++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++
T Consensus       162 L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~DFG~a  238 (382)
T 3tt0_A          162 LREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKK---CIHRDLAARNVLVTEDNVMKIADFGLA  238 (382)
T ss_dssp             HHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECSCSCC
T ss_pred             HHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCcceEEEcCCCcEEEcccCcc
Confidence            9999976542110      0001124899999999999999999999998   999999999999999999999999998


Q ss_pred             CCCCC-------------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHH
Q 047629          479 APATN-------------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEK  532 (615)
Q Consensus       479 ~~~~~-------------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~  532 (615)
                      +....                         .++.++|||||||++|||++ |+.|+......+       +.        
T Consensus       239 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~-------~~--------  303 (382)
T 3tt0_A          239 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE-------LF--------  303 (382)
T ss_dssp             CCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH-------HH--------
T ss_pred             cccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHH-------HH--------
Confidence            74321                         13558999999999999999 999987543111       11        


Q ss_pred             HHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchh
Q 047629          533 REERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE  590 (615)
Q Consensus       533 ~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~  590 (615)
                        ..+.....+    ..+......+.+++.+||+.||++|||++||++.|+.+.....
T Consensus       304 --~~~~~~~~~----~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~  355 (382)
T 3tt0_A          304 --KLLKEGHRM----DKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTS  355 (382)
T ss_dssp             --HHHHTTCCC----CCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred             --HHHHcCCCC----CCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHh
Confidence              111111111    2233444568999999999999999999999999998875543

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=8.5e-34  Score=291.48  Aligned_cols=217  Identities=24%  Similarity=0.350  Sum_probs=173.4

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||+|.+.          +.+.+|+.++.+++||||+++++++.+. +..++||||+++|+|.+++.
T Consensus        25 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~-~~~~lv~e~~~g~~L~~~l~  103 (294)
T 4eqm_A           25 STVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEED-DCYYLVMEYIEGPTLSEYIE  103 (294)
T ss_dssp             EEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECS-SEEEEEEECCCSCBHHHHHH
T ss_pred             EEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeC-CeEEEEEeCCCCCCHHHHHH
Confidence            58999986  68999999873          3577899999999999999999998754 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------  483 (615)
                      ...          .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++....       
T Consensus       104 ~~~----------~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~  170 (294)
T 4eqm_A          104 SHG----------PLSVDTAINFTNQILDGIKHAHDMR---IVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTN  170 (294)
T ss_dssp             HHC----------SCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCSSSTTC---------
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEEeCCCccccccccccccC
Confidence            653          3899999999999999999999998   99999999999999999999999999864321       


Q ss_pred             -----------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          484 -----------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       484 -----------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                       ..+.++||||||+++|||++|+.||........      ..          ..+.+. .+.+.
T Consensus       171 ~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~------~~----------~~~~~~-~~~~~  233 (294)
T 4eqm_A          171 HVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSI------AI----------KHIQDS-VPNVT  233 (294)
T ss_dssp             ----CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHH------HH----------HHHSSC-CCCHH
T ss_pred             ccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHH------HH----------HHhhcc-CCCcc
Confidence                             245689999999999999999999975432110      00          001110 11111


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHhcccchh
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRP-NMAEVVFNLSVLTQSTE  590 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RP-sm~ev~~~L~~l~~~~~  590 (615)
                      ...+.+.+..+.+++.+|++.||.+|| +++++.+.|+.+.....
T Consensus       234 ~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~~~  278 (294)
T 4eqm_A          234 TDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHENR  278 (294)
T ss_dssp             HHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSSSS
T ss_pred             hhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhhcc
Confidence            112233445689999999999999999 89999999998876544

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=2.8e-34  Score=319.81  Aligned_cols=214  Identities=28%  Similarity=0.423  Sum_probs=174.3

Q ss_pred             ceEEEEEEC-CeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATID-GKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~~-g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      |.||+|.+. +..||||+++      +++.+|+++|++++|+||+++++++.+  +..++||||+++|+|.++|..... 
T Consensus       281 g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~--~~~~lv~e~~~~gsL~~~l~~~~~-  357 (535)
T 2h8h_A          281 GEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE--EPIYIVTEYMSKGSLLDFLKGETG-  357 (535)
T ss_dssp             EEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS--SSCEEEECCCTTEEHHHHHSHHHH-
T ss_pred             eEEEEEEECCCceEEEEEeCCCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEee--ccceEeeehhcCCcHHHHHhhcCC-
Confidence            589999994 5789999986      468899999999999999999999864  468999999999999999975321 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------------  483 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------------  483 (615)
                             ..+++.+++.|+.||+.||+|||+++   |+||||||+|||++.++.+||+|||+++....            
T Consensus       358 -------~~l~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~  427 (535)
T 2h8h_A          358 -------KYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP  427 (535)
T ss_dssp             -------TTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHHTTCSTTSC
T ss_pred             -------CCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCHhhEEEcCCCcEEEcccccceecCCCceecccCCcCc
Confidence                   13899999999999999999999998   99999999999999999999999999975421            


Q ss_pred             ------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          484 ------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       484 ------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  .++.++|||||||+||||++ |+.||......+   ..    .          .+.....    ...+
T Consensus       428 ~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~---~~----~----------~i~~~~~----~~~~  486 (535)
T 2h8h_A          428 IKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE---VL----D----------QVERGYR----MPCP  486 (535)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHH---HH----H----------HHHTTCC----CCCC
T ss_pred             ccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH---HH----H----------HHHcCCC----CCCC
Confidence                        24568999999999999999 899987543211   00    0          1111111    1223


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchh
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE  590 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~  590 (615)
                      ..+...+.+|+..||+.||++|||+++|++.|+.+..+.+
T Consensus       487 ~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~~  526 (535)
T 2h8h_A          487 PECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE  526 (535)
T ss_dssp             TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCCS
T ss_pred             CCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhccC
Confidence            3455678999999999999999999999999998876543

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=7.7e-34  Score=295.03  Aligned_cols=228  Identities=25%  Similarity=0.374  Sum_probs=176.1

Q ss_pred             ceEEEEEE------CCeEEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEEEEcCC-CcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI------DGKVLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQ-GNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~------~g~~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~~~~~~-~~~~lV~E~~~~GsL~~  407 (615)
                      |.||++.+      +|+.||||+++.        .+.+|++++++++|+||+++++++.+.+ ...++||||+++|+|.+
T Consensus        45 g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~  124 (318)
T 3lxp_A           45 GKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRD  124 (318)
T ss_dssp             EEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEEEECCCTTCBHHH
T ss_pred             eEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEEEEecccCCcHHH
Confidence            58988875      578999999863        3788999999999999999999987643 35799999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC---
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND---  484 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~---  484 (615)
                      ++....           +++.+++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++.....   
T Consensus       125 ~l~~~~-----------~~~~~~~~i~~~l~~~l~~LH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~  190 (318)
T 3lxp_A          125 YLPRHS-----------IGLAQLLLFAQQICEGMAYLHAQH---YIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEY  190 (318)
T ss_dssp             HGGGSC-----------CCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCGGGCEECCTTCSE
T ss_pred             HHhhCC-----------CCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCchheEEEcCCCCEEECCccccccccccccc
Confidence            997542           889999999999999999999998   999999999999999999999999998654211   


Q ss_pred             -----------------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          485 -----------------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       485 -----------------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                             ++.++||||||+++|||++|+.|+........ ....     ..........+.+.+
T Consensus       191 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~  264 (318)
T 3lxp_A          191 YRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFL-ELIG-----IAQGQMTVLRLTELL  264 (318)
T ss_dssp             EEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHH-HHHC-----SCCHHHHHHHHHHHH
T ss_pred             cccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhh-hhhc-----ccccchhHHHHHHHH
Confidence                                   23478999999999999999999864321100 0000     000000111222222


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchh
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE  590 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~  590 (615)
                      +.......+......+.+|+++||+.||++|||+.|+++.|+.+.+...
T Consensus       265 ~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~  313 (318)
T 3lxp_A          265 ERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQ  313 (318)
T ss_dssp             HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             hcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhc
Confidence            2233333444555678999999999999999999999999998876543

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=6.7e-34  Score=297.23  Aligned_cols=203  Identities=27%  Similarity=0.413  Sum_probs=165.6

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.||+|..  +|+.||||++..         .+.+|+++|++++||||+++++++... +..++||||+++|+|.+++..
T Consensus        29 g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~-~~~~lv~e~~~~~~L~~~l~~  107 (328)
T 3fe3_A           29 AKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETE-KTLYLIMEYASGGEVFDYLVA  107 (328)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEEEECCCTTCBHHHHHHH
T ss_pred             EEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC-CEEEEEEECCCCCcHHHHHHH
Confidence            48999997  799999999852         367899999999999999999998754 479999999999999999976


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--------  483 (615)
                      ..          .+++.++..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++....        
T Consensus       108 ~~----------~l~~~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~  174 (328)
T 3fe3_A          108 HG----------RMKEKEARSKFRQIVSAVQYCHQKR---IVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFC  174 (328)
T ss_dssp             HC----------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSCGGGTTS
T ss_pred             cC----------CCCHHHHHHHHHHHHHHHHHHHHCC---EeccCCCHHHEEEcCCCCEEEeeccCceecCCCCcccccc
Confidence            54          2899999999999999999999998   99999999999999999999999999864321        


Q ss_pred             --------------C-CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          484 --------------D-VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       484 --------------~-~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                    . .++++|||||||++|||++|+.||......   .+    ...         ....  ..    .
T Consensus       175 gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~---~~----~~~---------i~~~--~~----~  232 (328)
T 3fe3_A          175 GAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLK---EL----RER---------VLRG--KY----R  232 (328)
T ss_dssp             SSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHH---HH----HHH---------HHHC--CC----C
T ss_pred             CCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHH---HH----HHH---------HHhC--CC----C
Confidence                          1 135899999999999999999999754311   10    000         0010  11    1


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .|......+.+|+.+||+.||.+|||+.|++++
T Consensus       233 ~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~h  265 (328)
T 3fe3_A          233 IPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKD  265 (328)
T ss_dssp             CCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            233334557899999999999999999999875

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=7.5e-34  Score=286.51  Aligned_cols=212  Identities=25%  Similarity=0.438  Sum_probs=172.8

Q ss_pred             ceEEEEEE-CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      +.||++.. +++.||+|.++      +.+.+|++++++++||||+++++++.+. +..++||||+++|+|.+++..... 
T Consensus        22 g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~~~~-   99 (267)
T 3t9t_A           22 GLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQ-APICLVTEFMEHGCLSDYLRTQRG-   99 (267)
T ss_dssp             EEEEEEEETTTEEEEEEEECTTTBCHHHHHHHHHHHHTCCCTTBCCEEEEECSS-SSCEEEECCCTTCBHHHHHHHTTT-
T ss_pred             eeEEEEEecCCCeEEEEEccccCCCHHHHHHHHHHHHhCCCCCEeeEEEEEccC-CCeEEEEeCCCCCcHHHHHhhCcc-
Confidence            58999998 78899999986      4588999999999999999999998754 478999999999999999976543 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------------  482 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------------  482 (615)
                              .+++..+..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++...             
T Consensus       100 --------~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~  168 (267)
T 3t9t_A          100 --------LFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFP  168 (267)
T ss_dssp             --------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCC
T ss_pred             --------cCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCchheEEECCCCCEEEccccccccccccccccccccccc
Confidence                    3899999999999999999999998   9999999999999999999999999986431             


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                 ..++.++||||||+++|||++ |+.|+......+   ..              ..+.....+    ..+
T Consensus       169 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~---~~--------------~~i~~~~~~----~~~  227 (267)
T 3t9t_A          169 VKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE---VV--------------EDISTGFRL----YKP  227 (267)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH---HH--------------HHHHTTCCC----CCC
T ss_pred             ccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHH---HH--------------HHHhcCCcC----CCC
Confidence                       124568999999999999999 898987543211   00              011111111    112


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      ......+.+++.+||+.||++||++.|+++.|+.+.++
T Consensus       228 ~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (267)
T 3t9t_A          228 RLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES  265 (267)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             ccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence            23345688999999999999999999999999988653

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.3e-33  Score=295.43  Aligned_cols=217  Identities=26%  Similarity=0.462  Sum_probs=171.6

Q ss_pred             ceEEEEEEC------CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATID------GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~~------g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||+|...      +..||||.++        ..+.+|++++++++|+||+++++++.+ .+..++||||+++|+|.++
T Consensus        58 g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e~~~~~~L~~~  136 (333)
T 1mqb_A           58 GEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISK-YKPMMIITEYMENGALDKF  136 (333)
T ss_dssp             SEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS-SSSEEEEEECCTTEEHHHH
T ss_pred             eEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEec-CCCcEEEEeCCCCCcHHHH
Confidence            589999872      2469999985        247789999999999999999999865 4479999999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      +.....         .+++.+++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...      
T Consensus       137 l~~~~~---------~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~  204 (333)
T 1mqb_A          137 LREKDG---------EFSVLQLVGMLRGIAAGMKYLANMN---YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAT  204 (333)
T ss_dssp             HHHTTT---------CSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCCCC-----------
T ss_pred             HHhCCC---------CCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChheEEECCCCcEEECCCCcchhhccccccc
Confidence            976533         3899999999999999999999998   9999999999999999999999999986431      


Q ss_pred             --------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 --------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 --------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                          ..++.++||||||+++|||++ |+.||......+   ..              ..+.+..
T Consensus       205 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~---~~--------------~~~~~~~  267 (333)
T 1mqb_A          205 YTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHE---VM--------------KAINDGF  267 (333)
T ss_dssp             ------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH---HH--------------HHHHTTC
T ss_pred             cccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHH---HH--------------HHHHCCC
Confidence                                123557999999999999999 999986543211   00              0111111


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchhhhh
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTETLE  593 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~~~~  593 (615)
                      .+    ..+......+.+++.+||+.||.+||++.|+++.|+.+........
T Consensus       268 ~~----~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~~~~  315 (333)
T 1mqb_A          268 RL----PTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPDSLK  315 (333)
T ss_dssp             CC----CCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGGGGG
T ss_pred             cC----CCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcchhhh
Confidence            11    1233445568999999999999999999999999998877655443

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=2.3e-34  Score=292.57  Aligned_cols=214  Identities=25%  Similarity=0.413  Sum_probs=171.6

Q ss_pred             ceEEEEEECCeEEEEEEcc-----HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCC
Q 047629          343 KSVYRATIDGKVLAVKKIK-----EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSS  417 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~-----~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~  417 (615)
                      +.||++..+|+.||||.++     +.+.+|++++++++|+||+++++++.+.++..++||||+++|+|.+++.....   
T Consensus        35 g~V~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~---  111 (278)
T 1byg_A           35 GDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGR---  111 (278)
T ss_dssp             CEEEEEEETTEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHH---
T ss_pred             ceEEEEEEcCCEEEEEEecchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecCCCCCHHHHHHhccc---
Confidence            5899999999999999986     45789999999999999999999987655578999999999999999975432   


Q ss_pred             CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------------
Q 047629          418 SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------------  482 (615)
Q Consensus       418 ~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------------  482 (615)
                           ..+++..+..++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++...               
T Consensus       112 -----~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~y~aP  183 (278)
T 1byg_A          112 -----SVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAP  183 (278)
T ss_dssp             -----HHCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTSCEEECCCCC------------CCTTTSCH
T ss_pred             -----ccCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCCcceEEEeCCCcEEEeeccccccccccccCCCccccccCH
Confidence                 13789999999999999999999998   9999999999999999999999999986432               


Q ss_pred             -----CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHH
Q 047629          483 -----NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALS  556 (615)
Q Consensus       483 -----~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~  556 (615)
                           ..++.++||||||+++|||++ |+.|+......+.   .              ..+.....+    ..+......
T Consensus       184 E~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~---~--------------~~~~~~~~~----~~~~~~~~~  242 (278)
T 1byg_A          184 EALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDV---V--------------PRVEKGYKM----DAPDGCPPA  242 (278)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGH---H--------------HHHTTTCCC----CCCTTCCHH
T ss_pred             HHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHH---H--------------HHHhcCCCC----CCcccCCHH
Confidence                 124568999999999999998 9999875442111   0              011111122    223344456


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          557 LATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       557 l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      +.+++..||+.||.+||++.|+++.|+.+...
T Consensus       243 l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~  274 (278)
T 1byg_A          243 VYEVMKNCWHLDAAMRPSFLQLREQLEHIKTH  274 (278)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCChhhCCCHHHHHHHHHHHHhh
Confidence            89999999999999999999999999987643

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.8e-33  Score=292.13  Aligned_cols=225  Identities=23%  Similarity=0.354  Sum_probs=169.9

Q ss_pred             ceEEEEEECCeEEEEEEccH----HHHHHHHHHHhc--CCCCcccEEEEEEcCC---CcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATIDGKVLAVKKIKE----DVTEELRILQRI--NHANLVKLMGVSSDSQ---GNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~~----~~~~Ei~~l~~l--~H~niv~l~g~~~~~~---~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||+|..+|+.||||++..    .+..|.+++..+  +|+||+++++++....   ...++||||+++|+|.+++... 
T Consensus        51 g~V~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~-  129 (337)
T 3mdy_A           51 GEVWMGKWRGEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKST-  129 (337)
T ss_dssp             EEEEEEEETTEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEEEECCCTTCBHHHHHHHC-
T ss_pred             eEEEEEEECCceEEEEEEeccccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEEEEeccCCCcHHHHhhcc-
Confidence            58999999999999999853    345666666655  9999999999987653   3689999999999999999653 


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCC-----CCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC----
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA-----QPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND----  484 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~----  484 (615)
                                .+++..++.++.|++.||.|||++.     .++|+||||||+|||++.++.+||+|||+++.....    
T Consensus       130 ----------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~  199 (337)
T 3mdy_A          130 ----------TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEV  199 (337)
T ss_dssp             ----------CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEECC------
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCceeeccccccc
Confidence                      2899999999999999999999881     123999999999999999999999999998532110    


Q ss_pred             -----------------------CCC------cccchhHHHHHHHHHcC----------CCCCCCCCCChhHHHHHHHHH
Q 047629          485 -----------------------VMP------KFDVFAFGVVLLELLSG----------KKATRTTENGKTAVLWKEIRE  525 (615)
Q Consensus       485 -----------------------~~~------k~DV~SfGvvl~ElltG----------~~p~~~~~~~~~~~l~~~~~~  525 (615)
                                             ...      ++|||||||++|||++|          +.|+.........  ..... 
T Consensus       200 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~--~~~~~-  276 (337)
T 3mdy_A          200 DIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPS--YEDMR-  276 (337)
T ss_dssp             ---CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCC--HHHHH-
T ss_pred             cCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCc--hhhhH-
Confidence                                   112      38999999999999999          5555443221111  00011 


Q ss_pred             HHhHHHHHHHHHhhhcCCcCCCCC-ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          526 VLKVEEKREERLRNWMDPNLESFY-PIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       526 ~~~~~~~~~~~~~~~~dp~l~~~~-~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                              .........+.+...+ +.++...+.+++.+||+.||.+|||+.||++.|+.+.++.
T Consensus       277 --------~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~  333 (337)
T 3mdy_A          277 --------EIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQ  333 (337)
T ss_dssp             --------HHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred             --------HHHhhhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhc
Confidence                    1111122233322221 1266778999999999999999999999999999887764

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=7.1e-34  Score=321.26  Aligned_cols=212  Identities=26%  Similarity=0.382  Sum_probs=174.5

Q ss_pred             ceEEEEEE----CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI----DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~----~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||+|.+    ++..||||+++        +++.+|+++|++++|+|||+++++|.+  +..++||||+++|+|.+++.
T Consensus       350 G~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~--~~~~lv~E~~~~g~L~~~l~  427 (613)
T 2ozo_A          350 GSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA--EALMLVMEMAGGGPLHKFLV  427 (613)
T ss_dssp             SEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES--SSEEEEEECCTTCBHHHHHT
T ss_pred             cEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc--CCeEEEEEeCCCCcHHHHHh
Confidence            58999987    35679999985        358899999999999999999999874  36999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ....         .+++.++..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+++...        
T Consensus       428 ~~~~---------~l~~~~~~~i~~qi~~~L~~LH~~~---iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~  495 (613)
T 2ozo_A          428 GKRE---------EIPVSNVAELLHQVSMGMKYLEEKN---FVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTA  495 (613)
T ss_dssp             TCTT---------TSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCSTTTTCC--------
T ss_pred             hccC---------CCCHHHHHHHHHHHHHHHHHHHHCC---EEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeee
Confidence            6533         3899999999999999999999998   9999999999999999999999999997542        


Q ss_pred             ------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCC
Q 047629          483 ------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDP  543 (615)
Q Consensus       483 ------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp  543 (615)
                                        ..++.++|||||||+||||++ |+.||......+.   ..              .+..-   
T Consensus       496 ~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~---~~--------------~i~~~---  555 (613)
T 2ozo_A          496 RSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEV---MA--------------FIEQG---  555 (613)
T ss_dssp             ------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHH---HH--------------HHHTT---
T ss_pred             ccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH---HH--------------HHHcC---
Confidence                              124568999999999999998 9999976543211   10              11111   


Q ss_pred             cCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          544 NLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       544 ~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                       .....+..+...+.+|+..||+.||++||++.+|++.|+.+..+.
T Consensus       556 -~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~  600 (613)
T 2ozo_A          556 -KRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSL  600 (613)
T ss_dssp             -CCCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred             -CCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHh
Confidence             112234455567899999999999999999999999998876543

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9e-34  Score=297.27  Aligned_cols=223  Identities=26%  Similarity=0.390  Sum_probs=172.4

Q ss_pred             ceEEEEEE-------CCeEEEEEEcc--------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI-------DGKVLAVKKIK--------EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~-------~g~~vAvK~~~--------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      |.||+|..       +++.||||.++        +.+.+|+.++.++ +||||+++++++... +..++||||+++|+|.
T Consensus        59 g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~-~~~~lv~e~~~~g~L~  137 (344)
T 1rjb_A           59 GKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLS-GPIYLIFEYCCYGDLL  137 (344)
T ss_dssp             EEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS-SSCEEEEECCTTCBHH
T ss_pred             ceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeC-CccEEEEecCCCCcHH
Confidence            58999986       35689999985        3477999999999 999999999998754 4799999999999999


Q ss_pred             HhhccCCCCCC-------------CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEe
Q 047629          407 KWLHPKSKSSS-------------SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIA  473 (615)
Q Consensus       407 ~~L~~~~~~~~-------------~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~  473 (615)
                      +++........             .......+++..++.++.|++.||+|||+++   |+||||||+|||++.++.+||+
T Consensus       138 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kL~  214 (344)
T 1rjb_A          138 NYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKS---CVHRDLAARNVLVTHGKVVKIC  214 (344)
T ss_dssp             HHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTT---EEETTCSGGGEEEETTTEEEEC
T ss_pred             HHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChhhEEEcCCCcEEeC
Confidence            99976542100             0001123899999999999999999999998   9999999999999999999999


Q ss_pred             ecCCCCCCC-------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHH
Q 047629          474 NFSLAAPAT-------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVL  527 (615)
Q Consensus       474 DFGla~~~~-------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~  527 (615)
                      |||+++...                         ..++.++||||||+++|||++ |+.||.........  .    .  
T Consensus       215 Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~--~----~--  286 (344)
T 1rjb_A          215 DFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANF--Y----K--  286 (344)
T ss_dssp             CCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHH--H----H--
T ss_pred             CCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCcHHHH--H----H--
Confidence            999986431                         124568999999999999998 99999765432211  0    0  


Q ss_pred             hHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          528 KVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       528 ~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                              .+.....+    ..+......+.+|+..||+.||.+|||+.|+++.|+.+....
T Consensus       287 --------~~~~~~~~----~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~  336 (344)
T 1rjb_A          287 --------LIQNGFKM----DQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADA  336 (344)
T ss_dssp             --------HHHTTCCC----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC---
T ss_pred             --------HHhcCCCC----CCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHH
Confidence                    11111122    223334556899999999999999999999999999877653

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=7.5e-34  Score=289.96  Aligned_cols=214  Identities=25%  Similarity=0.384  Sum_probs=175.5

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      |.||+|..  +++.||||.++      +.+.+|++++++++|+||+++++++.+ ++..++||||+++|+|.+++.....
T Consensus        27 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~~v~e~~~~~~L~~~~~~~~~  105 (288)
T 3kfa_A           27 GEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR-EPPFYIITEFMTYGNLLDYLRECNR  105 (288)
T ss_dssp             CSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSSEEEEEECCTTEEHHHHHHHCCT
T ss_pred             eeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEcc-CCCEEEEEEcCCCCcHHHHHHhccc
Confidence            58999998  48999999986      457899999999999999999999865 4479999999999999999976443


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-----------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-----------  483 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-----------  483 (615)
                      .        .+++..++.++.|++.||.|||+++   |+||||||+||+++.++.+||+|||+++....           
T Consensus       106 ~--------~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~  174 (288)
T 3kfa_A          106 Q--------EVSAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF  174 (288)
T ss_dssp             T--------TSCHHHHHHHHHHHHHHHHHHHHHT---CCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSSEEETTEEE
T ss_pred             C--------CccHhHHHHHHHHHHHHHHHHHHCC---ccCCCCCcceEEEcCCCCEEEccCccceeccCCccccccCCcc
Confidence            2        3899999999999999999999998   99999999999999999999999999865421           


Q ss_pred             -------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          484 -------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       484 -------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                   .++.++||||||+++|||++ |+.|+.........                 ..+.....+    ..
T Consensus       175 ~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~-----------------~~~~~~~~~----~~  233 (288)
T 3kfa_A          175 PIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVY-----------------ELLEKDYRM----ER  233 (288)
T ss_dssp             CGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHH-----------------HHHHTTCCC----CC
T ss_pred             ccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHH-----------------HHHhccCCC----CC
Confidence                         23558999999999999999 99998765422111                 011111122    22


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      +......+.+++..|++.||.+|||+.|+++.|+.+.+..
T Consensus       234 ~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~~  273 (288)
T 3kfa_A          234 PEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQES  273 (288)
T ss_dssp             CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHhc
Confidence            3344456899999999999999999999999999887653

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-33  Score=289.88  Aligned_cols=218  Identities=29%  Similarity=0.452  Sum_probs=170.6

Q ss_pred             ceEEEEEECCeEEEEEEcc-----HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCC
Q 047629          343 KSVYRATIDGKVLAVKKIK-----EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSS  417 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~-----~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~  417 (615)
                      |.||++...++.||||+++     +.+.+|++++++++||||+++++++.   +..++||||+++|+|.+++......  
T Consensus        22 g~V~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~---~~~~lv~e~~~~~~L~~~l~~~~~~--   96 (307)
T 2eva_A           22 GVVCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACL---NPVCLVMEYAEGGSLYNVLHGAEPL--   96 (307)
T ss_dssp             SEEEEEEETTEEEEEEECSSTTHHHHHHHHHHHHHHCCCTTBCCEEEBCT---TTTEEEEECCTTCBHHHHHHCSSSE--
T ss_pred             ceEEEEEECCeeEEEEEecChhHHHHHHHHHHHHhcCCCCCcCeEEEEEc---CCcEEEEEcCCCCCHHHHHhccCCC--
Confidence            5899999999999999985     35789999999999999999999874   2479999999999999999865421  


Q ss_pred             CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCc-EEEeecCCCCCCC--------------
Q 047629          418 SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK-AKIANFSLAAPAT--------------  482 (615)
Q Consensus       418 ~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~-~kl~DFGla~~~~--------------  482 (615)
                           ..+++..++.++.|++.||+|||+.+..+|+||||||+|||++.++. +||+|||+++...              
T Consensus        97 -----~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~a  171 (307)
T 2eva_A           97 -----PYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMA  171 (307)
T ss_dssp             -----ECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC------------CCTTSSC
T ss_pred             -----CccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccccccCCCCCceEC
Confidence                 13789999999999999999999943234999999999999998876 7999999985431              


Q ss_pred             ------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHH
Q 047629          483 ------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALS  556 (615)
Q Consensus       483 ------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~  556 (615)
                            ..++.++||||||+++|||++|+.||...........+               .......+.+..    .....
T Consensus       172 PE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~---------------~~~~~~~~~~~~----~~~~~  232 (307)
T 2eva_A          172 PEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMW---------------AVHNGTRPPLIK----NLPKP  232 (307)
T ss_dssp             HHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHH---------------HHHTTCCCCCBT----TCCHH
T ss_pred             hhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHH---------------HHhcCCCCCccc----ccCHH
Confidence                  23567899999999999999999999754432211111               011111222222    33445


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          557 LATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       557 l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      +.+++.+||+.||.+|||++|+++.|+.+.+..
T Consensus       233 l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~  265 (307)
T 2eva_A          233 IESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYF  265 (307)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhc
Confidence            789999999999999999999999999887653

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=9.5e-34  Score=292.70  Aligned_cols=220  Identities=27%  Similarity=0.406  Sum_probs=172.2

Q ss_pred             ceEEEEEE-------CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI-------DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~-------~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||++..       +++.||||.++        +.+.+|++++++++||||+++++++.+. +..++||||+++|+|.+
T Consensus        37 g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~  115 (314)
T 2ivs_A           37 GKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQD-GPLLLIVEYAKYGSLRG  115 (314)
T ss_dssp             SEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS-SSCEEEEECCTTCBHHH
T ss_pred             eeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecC-CceEEEEeecCCCCHHH
Confidence            58999975       34889999985        3467899999999999999999998754 47899999999999999


Q ss_pred             hhccCCCCCC--------------CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEe
Q 047629          408 WLHPKSKSSS--------------SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIA  473 (615)
Q Consensus       408 ~L~~~~~~~~--------------~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~  473 (615)
                      ++........              .......+++.+++.++.|++.||.|||+++   |+||||||+|||++.++.+||+
T Consensus       116 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dikp~NIli~~~~~~kl~  192 (314)
T 2ivs_A          116 FLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMK---LVHRDLAARNILVAEGRKMKIS  192 (314)
T ss_dssp             HHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTEEEEC
T ss_pred             HHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCC---CcccccchheEEEcCCCCEEEc
Confidence            9986542100              0001124899999999999999999999998   9999999999999999999999


Q ss_pred             ecCCCCCCCC-------------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHH
Q 047629          474 NFSLAAPATN-------------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVL  527 (615)
Q Consensus       474 DFGla~~~~~-------------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~  527 (615)
                      |||+++....                         .++.++||||||+++|||++ |+.|+.........   .      
T Consensus       193 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~---~------  263 (314)
T 2ivs_A          193 DFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLF---N------  263 (314)
T ss_dssp             CCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHH---H------
T ss_pred             cccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHH---H------
Confidence            9999864311                         13458999999999999999 99998765432111   0      


Q ss_pred             hHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhccc
Q 047629          528 KVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       528 ~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~  587 (615)
                              .+.....+    ..+......+.+++.+||+.||.+||++.|+++.|+.+..
T Consensus       264 --------~~~~~~~~----~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~  311 (314)
T 2ivs_A          264 --------LLKTGHRM----ERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMV  311 (314)
T ss_dssp             --------HHHTTCCC----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             --------HhhcCCcC----CCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence                    11111111    2233444568999999999999999999999999988754

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=5.2e-33  Score=290.91  Aligned_cols=222  Identities=25%  Similarity=0.400  Sum_probs=173.5

Q ss_pred             ceEEEEEECCeEEEEEEcc----HHHHHHHHHHHh--cCCCCcccEEEEEEcCCC---cEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATIDGKVLAVKKIK----EDVTEELRILQR--INHANLVKLMGVSSDSQG---NRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~----~~~~~Ei~~l~~--l~H~niv~l~g~~~~~~~---~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||+|..+|+.||||.++    ..+.+|.+++..  ++||||+++++++...++   ..++||||+++|+|.+++... 
T Consensus        56 g~Vy~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~-  134 (342)
T 1b6c_B           56 GEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY-  134 (342)
T ss_dssp             EEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEEEECCCTTCBHHHHHHHC-
T ss_pred             cEEEEEEEcCccEEEEEeCchhHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEEEEeecCCCcHHHHHhcc-
Confidence            5899999999999999986    346789999988  799999999999876542   689999999999999999753 


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHH--------hCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC-
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMH--------EHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND-  484 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH--------~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~-  484 (615)
                                .+++.+++.++.|++.||.|||        +++   |+||||||+|||++.++.+||+|||+++..... 
T Consensus       135 ----------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~  201 (342)
T 1b6c_B          135 ----------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPA---IAHRDLKSKNILVKKNGTCCIADLGLAVRHDSAT  201 (342)
T ss_dssp             ----------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCE---EECSCCSGGGEEECTTSCEEECCCTTCEEEETTT
T ss_pred             ----------CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCC---eeeCCCCHHHEEECCCCCEEEEECCCceeccccc
Confidence                      2899999999999999999999        666   999999999999999999999999998432110 


Q ss_pred             --------------------------------CCCcccchhHHHHHHHHHcC----------CCCCCCCCCChhHHHHHH
Q 047629          485 --------------------------------VMPKFDVFAFGVVLLELLSG----------KKATRTTENGKTAVLWKE  522 (615)
Q Consensus       485 --------------------------------~~~k~DV~SfGvvl~ElltG----------~~p~~~~~~~~~~~l~~~  522 (615)
                                                      .+.++||||||+++|||++|          +.||..........  ..
T Consensus       202 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~--~~  279 (342)
T 1b6c_B          202 DTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSV--EE  279 (342)
T ss_dssp             TEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCH--HH
T ss_pred             cccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccH--HH
Confidence                                            11479999999999999999          66775543211100  00


Q ss_pred             HHHHHhHHHHHHHHHhhhcCCcCCCCC-ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          523 IREVLKVEEKREERLRNWMDPNLESFY-PIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~dp~l~~~~-~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      +.         .........+.+...+ ..+....+.+|+.+||+.||++|||+.||++.|+.+.+..
T Consensus       280 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~~  338 (342)
T 1b6c_B          280 MR---------KVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE  338 (342)
T ss_dssp             HH---------HHHTTSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred             HH---------HHHHHHHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHHh
Confidence            00         1111222333333222 2356678999999999999999999999999999887653

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=9e-34  Score=288.84  Aligned_cols=211  Identities=24%  Similarity=0.375  Sum_probs=164.9

Q ss_pred             ceEEEEEEC-----CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATID-----GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~~-----g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|...     +..||+|.++        +.+.+|+.++++++||||+++++++.  ++..++||||+++|+|.+++
T Consensus        29 g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~--~~~~~lv~e~~~~~~L~~~l  106 (281)
T 1mp8_A           29 GDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT--ENPVWIIMELCTLGELRSFL  106 (281)
T ss_dssp             SEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC--SSSCEEEEECCTTEEHHHHH
T ss_pred             eeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc--cCccEEEEecCCCCCHHHHH
Confidence            589999872     4679999975        34778999999999999999999974  34689999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------  483 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------  483 (615)
                      .....         .+++..++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++....      
T Consensus       107 ~~~~~---------~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  174 (281)
T 1mp8_A          107 QVRKY---------SLDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKA  174 (281)
T ss_dssp             HHTTT---------TSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECC---------------
T ss_pred             HhcCC---------CCCHHHHHHHHHHHHHHHHHHHhCC---eecccccHHHEEECCCCCEEECccccccccCccccccc
Confidence            76542         3899999999999999999999998   99999999999999999999999999865321      


Q ss_pred             ------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCc
Q 047629          484 ------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPN  544 (615)
Q Consensus       484 ------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~  544 (615)
                                        .++.++||||||+++|||++ |+.||......+..   .              .+.....+ 
T Consensus       175 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~---~--------------~i~~~~~~-  236 (281)
T 1mp8_A          175 SKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVI---G--------------RIENGERL-  236 (281)
T ss_dssp             ----CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHH---H--------------HHHTTCCC-
T ss_pred             ccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHH---H--------------HHHcCCCC-
Confidence                              23557999999999999997 99998765432211   0              11111111 


Q ss_pred             CCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          545 LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       545 l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                         ..+......+.+++..||+.||++|||+.|+++.|+.+.+.
T Consensus       237 ---~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  277 (281)
T 1mp8_A          237 ---PMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE  277 (281)
T ss_dssp             ---CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ---CCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence               12334445688999999999999999999999999988654

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=7.9e-34  Score=294.76  Aligned_cols=221  Identities=22%  Similarity=0.379  Sum_probs=170.9

Q ss_pred             ceEEEEEEC-------CeEEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATID-------GKVLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~~-------g~~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||+|...       ++.||||.++.        .+.+|++++++++|+||+++++++.+. +..++||||+++|+|.+
T Consensus        39 g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~  117 (322)
T 1p4o_A           39 GMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG-QPTLVIMELMTRGDLKS  117 (322)
T ss_dssp             SEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSS-SSCEEEEECCTTCBHHH
T ss_pred             eEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccC-CccEEEEEeCCCCcHHH
Confidence            589999763       67899999852        477899999999999999999998654 47899999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++...............+++..++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...     
T Consensus       118 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~  194 (322)
T 1p4o_A          118 YLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANK---FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYY  194 (322)
T ss_dssp             HHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCE
T ss_pred             HHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCC---CccCCCccceEEEcCCCeEEECcCcccccccccccc
Confidence            99753210000000013789999999999999999999998   9999999999999999999999999986431     


Q ss_pred             --------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 --------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 --------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                          ..++.++||||||+++|||++ |+.|+......+   ..    .          .+   .
T Consensus       195 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~---~~----~----------~~---~  254 (322)
T 1p4o_A          195 RKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ---VL----R----------FV---M  254 (322)
T ss_dssp             EGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHH---HH----H----------HH---H
T ss_pred             ccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHH---HH----H----------HH---H
Confidence                                124568999999999999999 888886543211   00    0          01   1


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      .... ...+......+.+++.+||+.||.+|||+.|+++.|+.+...
T Consensus       255 ~~~~-~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~~  300 (322)
T 1p4o_A          255 EGGL-LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEP  300 (322)
T ss_dssp             TTCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCT
T ss_pred             cCCc-CCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhcc
Confidence            1111 112334445689999999999999999999999999987665

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=5.7e-33  Score=289.89  Aligned_cols=217  Identities=14%  Similarity=0.194  Sum_probs=171.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-----HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-----EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-----~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      |.||+|..  +|+.||||.+.     ..+.+|+++++++ +|+||+++++++... ...++||||+ +|+|.+++.....
T Consensus        23 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~-~~~~lv~e~~-~~~L~~~~~~~~~  100 (330)
T 2izr_A           23 GELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCG-KYNAMVLELL-GPSLEDLFDLCDR  100 (330)
T ss_dssp             TSEEEEEETTTTEEEEEEEEETTCSSCCHHHHHHHHHHHCSCTTSCCEEEEEEET-TEEEEEEECC-CCBHHHHHHHTTT
T ss_pred             ceEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHhhCCCCCCEEEEEEecC-CccEEEEEeC-CCCHHHHHHHcCC
Confidence            58999996  79999999886     3488999999999 999999999998764 4789999999 8999999986432


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCc-----EEEeecCCCCCCCC------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK-----AKIANFSLAAPATN------  483 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~-----~kl~DFGla~~~~~------  483 (615)
                               .+++..++.++.|++.||+|||+++   |+||||||+|||++.++.     +||+|||+++....      
T Consensus       101 ---------~~~~~~~~~i~~qi~~~l~~LH~~~---iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~  168 (330)
T 2izr_A          101 ---------TFSLKTVLMIAIQLISRMEYVHSKN---LIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKH  168 (330)
T ss_dssp             ---------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCB
T ss_pred             ---------CCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCcc
Confidence                     3899999999999999999999998   999999999999999887     99999999864211      


Q ss_pred             ------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhh
Q 047629          484 ------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRN  539 (615)
Q Consensus       484 ------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  539 (615)
                                              .++.++|||||||++|||++|+.||..............+...      ......+
T Consensus       169 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~------~~~~~~~  242 (330)
T 2izr_A          169 IPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDT------KRATPIE  242 (330)
T ss_dssp             CCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHH------HHHSCHH
T ss_pred             ccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhh------hccCCHH
Confidence                                    1345889999999999999999999875433322222111110      0000000


Q ss_pred             hcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          540 WMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       540 ~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      .    +..    ..+ .+.+++..||+.||.+||++++|.+.|+.+...
T Consensus       243 ~----~~~----~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~  282 (330)
T 2izr_A          243 V----LCE----NFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR  282 (330)
T ss_dssp             H----HTT----TCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             H----Hhc----cCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence            0    001    122 689999999999999999999999999877654

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=8.2e-34  Score=321.77  Aligned_cols=209  Identities=26%  Similarity=0.412  Sum_probs=171.6

Q ss_pred             ceEEEEEE----CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI----DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~----~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|.+    .++.||||+++         +++.+|+++|++++|+|||+++++|.+  +..++||||+++|+|.+++
T Consensus       383 G~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~--~~~~lv~E~~~~g~L~~~l  460 (635)
T 4fl3_A          383 GTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA--ESWMLVMEMAELGPLNKYL  460 (635)
T ss_dssp             EEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES--SSEEEEEECCTTEEHHHHH
T ss_pred             EEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec--CCEEEEEEccCCCCHHHHH
Confidence            58999976    45889999986         357899999999999999999999863  3689999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------  483 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------  483 (615)
                      ....          .+++.+++.|+.||+.||+|||+++   |+||||||+|||++.++.+||+|||+++....      
T Consensus       461 ~~~~----------~l~~~~~~~i~~qi~~~L~yLH~~~---iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~  527 (635)
T 4fl3_A          461 QQNR----------HVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK  527 (635)
T ss_dssp             HHCT----------TCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCTTHHHHTTC------
T ss_pred             hhCC----------CCCHHHHHHHHHHHHHHHHHHHHCC---EeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccc
Confidence            7643          3899999999999999999999998   99999999999999999999999999854311      


Q ss_pred             --------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          484 --------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       484 --------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                          .++.++|||||||++|||++ |+.||......+       +.          ..+.....
T Consensus       528 ~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~-------~~----------~~i~~~~~  590 (635)
T 4fl3_A          528 AQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE-------VT----------AMLEKGER  590 (635)
T ss_dssp             -------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH-------HH----------HHHHTTCC
T ss_pred             cccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH-------HH----------HHHHcCCC
Confidence                                24568999999999999999 999997654211       11          01111111


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhccc
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~  587 (615)
                          ...+..+...+.+|+..||+.||++||++.+|++.|+.+..
T Consensus       591 ----~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~  631 (635)
T 4fl3_A          591 ----MGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYY  631 (635)
T ss_dssp             ----CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             ----CCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence                22344455678999999999999999999999999987653

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=1e-32  Score=286.45  Aligned_cols=229  Identities=21%  Similarity=0.298  Sum_probs=175.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCC-cEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQG-NRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~-~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.||+|..  +|+.||||+++        +.+.+|++++++++||||+++++++...+. ..++||||+++|+|.+++..
T Consensus        23 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~  102 (319)
T 4euu_A           23 ANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEE  102 (319)
T ss_dssp             EEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEEECCTTCBHHHHHHS
T ss_pred             eEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEEeCCCCCCHHHHHHH
Confidence            58999998  48999999986        346789999999999999999999875443 57999999999999999986


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceee----CCCCcEEEeecCCCCCCC-----
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL----DSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl----d~~~~~kl~DFGla~~~~-----  482 (615)
                      ....       ..+++.+++.++.|++.||+|||+++   |+||||||+|||+    +.++.+||+|||+++...     
T Consensus       103 ~~~~-------~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~~  172 (319)
T 4euu_A          103 PSNA-------YGLPESEFLIVLRDVVGGMNHLRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQF  172 (319)
T ss_dssp             GGGT-------TCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCTTCCB
T ss_pred             hccc-------cCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEEeccCCCCceEEEccCCCceecCCCCce
Confidence            4321       13899999999999999999999998   9999999999999    888899999999985431     


Q ss_pred             -------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHH
Q 047629          483 -------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERL  537 (615)
Q Consensus       483 -------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  537 (615)
                                               ..++.++|||||||++|||++|+.||..........  ..+.......  ....+
T Consensus       173 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~--~~~~~~~~~~--p~~~~  248 (319)
T 4euu_A          173 VSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNK--EVMYKIITGK--PSGAI  248 (319)
T ss_dssp             CCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCH--HHHHHHHHHC--CTTCC
T ss_pred             eecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhH--HHHHHHhcCC--Ccccc
Confidence                                     234568999999999999999999997544322211  1111111000  00000


Q ss_pred             hhh---c--------CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          538 RNW---M--------DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       538 ~~~---~--------dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      ..+   .        +.......+......+.+++..||+.||++|||++|+++..+.-
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~  307 (319)
T 4euu_A          249 SGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDI  307 (319)
T ss_dssp             EEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred             hhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHH
Confidence            000   0        00111244567778899999999999999999999999988744

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.1e-34  Score=304.16  Aligned_cols=214  Identities=28%  Similarity=0.439  Sum_probs=166.9

Q ss_pred             ceEEEEEE---CC--eEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI---DG--KVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~---~g--~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|..   ++  ..||||.++        +.+.+|+.++++++||||++++++|.+.++..++||||+++|+|.+++
T Consensus       103 g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~e~~~~g~L~~~l  182 (373)
T 3c1x_A          103 GCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFI  182 (373)
T ss_dssp             SEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEEECCTTCBHHHHH
T ss_pred             eEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEEECCCCCCHHHHH
Confidence            58999987   22  468999885        357889999999999999999999876666789999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      .....         .+++.+++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...       
T Consensus       183 ~~~~~---------~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~  250 (373)
T 3c1x_A          183 RNETH---------NPTVKDLIGFGLQVAKGMKFLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSV  250 (373)
T ss_dssp             HCTTC---------CCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCC--------------
T ss_pred             hhccc---------CCCHHHHHHHHHHHHHHHHHHHHCC---EecCccchheEEECCCCCEEEeeccccccccccccccc
Confidence            76543         3889999999999999999999998   9999999999999999999999999986431       


Q ss_pred             --------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 --------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 --------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                          ..++.++||||||+++|||++ |..|+......+...                 .+....
T Consensus       251 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~-----------------~~~~~~  313 (373)
T 3c1x_A          251 HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITV-----------------YLLQGR  313 (373)
T ss_dssp             -------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHH-----------------HHHTTC
T ss_pred             cccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHH-----------------HHHcCC
Confidence                                124568999999999999999 566776544322111                 001101


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      .+    ..+......+.+++..||+.||++||++.|+++.|+.+....
T Consensus       314 ~~----~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~  357 (373)
T 3c1x_A          314 RL----LQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTF  357 (373)
T ss_dssp             CC----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTC
T ss_pred             CC----CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence            11    112334456899999999999999999999999999887553

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=289.40  Aligned_cols=205  Identities=25%  Similarity=0.310  Sum_probs=161.5

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------------------------------HHHHHHHHHHHhcCCCCcccEEEEEE
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------------------------------EDVTEELRILQRINHANLVKLMGVSS  387 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------------------------------~~~~~Ei~~l~~l~H~niv~l~g~~~  387 (615)
                      |.||++..  +|+.||||+++                                 +.+.+|+++|++++||||+++++++.
T Consensus        27 g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~  106 (298)
T 2zv2_A           27 GVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPNVVKLVEVLD  106 (298)
T ss_dssp             CEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHTCCCTTBCCEEEEEE
T ss_pred             EEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhCCCCCCCeEEEEEE
Confidence            58999987  68999999874                                 23678999999999999999999987


Q ss_pred             cC-CCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC
Q 047629          388 DS-QGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS  466 (615)
Q Consensus       388 ~~-~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~  466 (615)
                      +. ++..++||||+++|+|.+++...           .+++.++..++.|++.||+|||+++   |+||||||+|||++.
T Consensus       107 ~~~~~~~~lv~e~~~~~~l~~~~~~~-----------~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~  172 (298)
T 2zv2_A          107 DPNEDHLYMVFELVNQGPVMEVPTLK-----------PLSEDQARFYFQDLIKGIEYLHYQK---IIHRDIKPSNLLVGE  172 (298)
T ss_dssp             CSSSSEEEEEEECCTTCBSCCSSCSS-----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECT
T ss_pred             cCCCCEEEEEEecCCCCcHHHHhhcC-----------CCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEECC
Confidence            53 34689999999999998875432           3899999999999999999999998   999999999999999


Q ss_pred             CCcEEEeecCCCCCCCCC--------------------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHH
Q 047629          467 RFKAKIANFSLAAPATND--------------------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLW  520 (615)
Q Consensus       467 ~~~~kl~DFGla~~~~~~--------------------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~  520 (615)
                      ++.+||+|||+++.....                          .+.++|||||||++|||++|+.||.....   ..+.
T Consensus       173 ~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~---~~~~  249 (298)
T 2zv2_A          173 DGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERI---MCLH  249 (298)
T ss_dssp             TSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHH
T ss_pred             CCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCccH---HHHH
Confidence            999999999998643210                          13467999999999999999999975331   1110


Q ss_pred             HHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          521 KEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .    .         ..........    ..+....+.+++.+||+.||++|||+.|++++
T Consensus       250 ~----~---------~~~~~~~~~~----~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~h  293 (298)
T 2zv2_A          250 S----K---------IKSQALEFPD----QPDIAEDLKDLITRMLDKNPESRIVVPEIKLH  293 (298)
T ss_dssp             H----H---------HHHCCCCCCS----SSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTC
T ss_pred             H----H---------HhcccCCCCC----ccccCHHHHHHHHHHhhcChhhCCCHHHHhcC
Confidence            0    0         0011111111    11233458899999999999999999998763

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=2.6e-33  Score=286.73  Aligned_cols=214  Identities=28%  Similarity=0.471  Sum_probs=166.6

Q ss_pred             ceEEEEEECCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||+|...+ .||||.++         +.+.+|++++++++|+||+++++++.  ....++||||+++|+|.+++....
T Consensus        38 g~Vy~~~~~~-~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~--~~~~~lv~e~~~~~~L~~~l~~~~  114 (289)
T 3og7_A           38 GTVYKGKWHG-DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST--APQLAIVTQWCEGSSLYHHLHASE  114 (289)
T ss_dssp             EEEEEEESSS-EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC--SSSCEEEEECCCEEEHHHHHTTC-
T ss_pred             eEEEEEEEcC-ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeecc--CCccEEEEEecCCCcHHHHHhhcc
Confidence            5899998765 49999885         34788999999999999999999764  346899999999999999997654


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                      .         .+++.+++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...           
T Consensus       115 ~---------~~~~~~~~~i~~qi~~~L~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  182 (289)
T 3og7_A          115 T---------KFEMKKLIDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQL  182 (289)
T ss_dssp             -----------CCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEEEECCCC-----------------
T ss_pred             C---------CCCHHHHHHHHHHHHHHHHHHHhCC---cccccCccceEEECCCCCEEEccceecccccccccccccccc
Confidence            3         3899999999999999999999998   9999999999999999999999999985321           


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                       ..++.++||||||+++|||++|+.||......+..      ...         .......+.+
T Consensus       183 ~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~------~~~---------~~~~~~~~~~  247 (289)
T 3og7_A          183 SGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQI------IEM---------VGRGSLSPDL  247 (289)
T ss_dssp             -CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHH------HHH---------HHHTSCCCCT
T ss_pred             CCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHH------HHH---------hcccccCcch
Confidence                             12345899999999999999999999765432111      110         0111122222


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhccc
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~  587 (615)
                       ..........+.+++..||+.||.+|||+.|+++.|+.+.+
T Consensus       248 -~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~  288 (289)
T 3og7_A          248 -SKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR  288 (289)
T ss_dssp             -TSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             -hhccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence             12233445678999999999999999999999999998764

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.3e-33  Score=286.67  Aligned_cols=213  Identities=26%  Similarity=0.384  Sum_probs=173.6

Q ss_pred             ceEEEEEE----CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI----DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~----~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||+|.+    +++.||||.++        +.+.+|++++++++||||+++++++. . +..++||||+++|+|.+++.
T Consensus        24 g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~-~~~~lv~e~~~~~~L~~~l~  101 (287)
T 1u59_A           24 GSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ-A-EALMLVMEMAGGGPLHKFLV  101 (287)
T ss_dssp             EEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-S-SSEEEEEECCTTEEHHHHHT
T ss_pred             eeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEec-C-CCcEEEEEeCCCCCHHHHHH
Confidence            58999986    57889999985        24778999999999999999999984 3 36899999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------  483 (615)
                      ....         .+++.++..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++....       
T Consensus       102 ~~~~---------~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~  169 (287)
T 1u59_A          102 GKRE---------EIPVSNVAELLHQVSMGMKYLEEKN---FVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTA  169 (287)
T ss_dssp             TCTT---------TSCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECC
T ss_pred             hCCc---------cCCHHHHHHHHHHHHHHHHHHHHCC---EeeCCCchheEEEcCCCCEEECcccceeeeccCcceeec
Confidence            5432         3899999999999999999999998   99999999999999999999999999864311       


Q ss_pred             -------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCC
Q 047629          484 -------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDP  543 (615)
Q Consensus       484 -------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp  543 (615)
                                         .++.++||||||+++|||++ |+.||......+.   ..              .+.....+
T Consensus       170 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~---~~--------------~i~~~~~~  232 (287)
T 1u59_A          170 RSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEV---MA--------------FIEQGKRM  232 (287)
T ss_dssp             CCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHH---HH--------------HHHTTCCC
T ss_pred             cccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHH---HH--------------HHhcCCcC
Confidence                               13457999999999999999 9999976543111   00              11111111


Q ss_pred             cCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchh
Q 047629          544 NLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE  590 (615)
Q Consensus       544 ~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~  590 (615)
                          ..+......+.+++..||+.||++||++.|+++.|+.+..+..
T Consensus       233 ----~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~  275 (287)
T 1u59_A          233 ----ECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLA  275 (287)
T ss_dssp             ----CCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             ----CCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcC
Confidence                2334445678999999999999999999999999998877654

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=2.9e-33  Score=284.43  Aligned_cols=212  Identities=27%  Similarity=0.435  Sum_probs=170.7

Q ss_pred             ceEEEEEE-CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      |.||+|.. +++.||||.++      +.+.+|++++++++|+||+++++++.+  +..++||||+++|+|.+++..... 
T Consensus        27 g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~--~~~~~v~e~~~~~~L~~~l~~~~~-  103 (279)
T 1qpc_A           27 GEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ--EPIYIITEYMENGSLVDFLKTPSG-  103 (279)
T ss_dssp             EEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS--SSCEEEEECCTTCBHHHHTTSHHH-
T ss_pred             eEEEEEEEcCCcEEEEEEecCCcccHHHHHHHHHHHHhCCCcCcceEEEEEcC--CCcEEEEecCCCCCHHHHHhcCCC-
Confidence            58999998 56789999886      357899999999999999999998753  368999999999999999975321 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------------  483 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------------  483 (615)
                             ..+++.++..++.|++.||+|||+++   ++||||||+||++++++.+||+|||+++....            
T Consensus       104 -------~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~  173 (279)
T 1qpc_A          104 -------IKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFP  173 (279)
T ss_dssp             -------HTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCC
T ss_pred             -------CCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHhhEEEcCCCCEEECCCcccccccCcccccccCCCCc
Confidence                   13899999999999999999999998   99999999999999999999999999864321            


Q ss_pred             ------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          484 ------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       484 ------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  .++.++||||||+++|||++ |+.|+......+   ..              ..+.....+    ..+
T Consensus       174 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~---~~--------------~~~~~~~~~----~~~  232 (279)
T 1qpc_A          174 IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE---VI--------------QNLERGYRM----VRP  232 (279)
T ss_dssp             TTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH---HH--------------HHHHTTCCC----CCC
T ss_pred             cCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHH---HH--------------HHHhcccCC----CCc
Confidence                        13457899999999999999 898987543211   00              011111111    122


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      ......+.+++..|++.||++|||+.++++.|+.+...
T Consensus       233 ~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  270 (279)
T 1qpc_A          233 DNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTA  270 (279)
T ss_dssp             TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHh
Confidence            33445689999999999999999999999999987654

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=6e-34  Score=296.79  Aligned_cols=212  Identities=22%  Similarity=0.362  Sum_probs=169.1

Q ss_pred             ceEEEEEE--CCeE----EEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGKV----LAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~~----vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||+|..  +|+.    ||+|.+.        ..+.+|+.++++++|+||+++++++.+  +..++|+||+++|+|.++
T Consensus        27 g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~~v~e~~~~~~L~~~  104 (325)
T 3kex_A           27 GTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPG--SSLQLVTQYLPLGSLLDH  104 (325)
T ss_dssp             CEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECB--SSEEEEEECCTTCBSHHH
T ss_pred             ceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CccEEEEEeCCCCCHHHH
Confidence            58999997  4543    8888774        236689999999999999999999853  468999999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-----
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-----  483 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-----  483 (615)
                      +.....         .+++..++.++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++....     
T Consensus       105 l~~~~~---------~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~  172 (325)
T 3kex_A          105 VRQHRG---------ALGPQLLLNWGVQIAKGMYYLEEHG---MVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQL  172 (325)
T ss_dssp             HHSSGG---------GSCTTHHHHHHHHHHHHHHHHHHTT---CCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCTTCC
T ss_pred             HHHccc---------cCCHHHHHHHHHHHHHHHHHHHhCC---CCCCccchheEEECCCCeEEECCCCcccccCcccccc
Confidence            976532         3889999999999999999999998   99999999999999999999999999865311     


Q ss_pred             --------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          484 --------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       484 --------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                          .++.++||||||+++|||++ |+.||......+...                 .+.....
T Consensus       173 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~-----------------~~~~~~~  235 (325)
T 3kex_A          173 LYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPD-----------------LLEKGER  235 (325)
T ss_dssp             C-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHH-----------------HHHTTCB
T ss_pred             cccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHH-----------------HHHcCCC
Confidence                                13568999999999999999 999997654322110                 0111111


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      +    ..+......+.+++..||+.||.+||+++|+++.|+.+....
T Consensus       236 ~----~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~~  278 (325)
T 3kex_A          236 L----AQPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMARDP  278 (325)
T ss_dssp             C----CCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTSH
T ss_pred             C----CCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcc
Confidence            1    112223334789999999999999999999999999887654

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.9e-34  Score=295.67  Aligned_cols=211  Identities=20%  Similarity=0.288  Sum_probs=163.0

Q ss_pred             ccccccccc----ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEE
Q 047629          334 NLSEHYSIG----KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVY  397 (615)
Q Consensus       334 ~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~  397 (615)
                      +|.....+|    |.||+|..  +|+.||||++..         ....|+..+.++ +|+||++++++|.+. +..++||
T Consensus        58 ~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~-~~~~lv~  136 (311)
T 3p1a_A           58 SFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEG-GILYLQT  136 (311)
T ss_dssp             HEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-TEEEEEE
T ss_pred             heeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeC-CEEEEEE
Confidence            455555555    58999998  689999998742         244566666655 999999999998754 4799999


Q ss_pred             eecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCC
Q 047629          398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSL  477 (615)
Q Consensus       398 E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  477 (615)
                      ||+ +|+|.+++.....         .++|..++.++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+
T Consensus       137 e~~-~~~L~~~~~~~~~---------~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kl~DFG~  203 (311)
T 3p1a_A          137 ELC-GPSLQQHCEAWGA---------SLPEAQVWGYLRDTLLALAHLHSQG---LVHLDVKPANIFLGPRGRCKLGDFGL  203 (311)
T ss_dssp             ECC-CCBHHHHHHHHCS---------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECGGGCEEECCCTT
T ss_pred             ecc-CCCHHHHHHhcCC---------CCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEECCCCCEEEcccee
Confidence            999 6799999876543         3999999999999999999999998   99999999999999999999999999


Q ss_pred             CCCCC---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHH
Q 047629          478 AAPAT---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREER  536 (615)
Q Consensus       478 a~~~~---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  536 (615)
                      ++...                     ..++.++|||||||++|||++|+.++....      .+..+             
T Consensus       204 a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~------~~~~~-------------  264 (311)
T 3p1a_A          204 LVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVACNMELPHGGE------GWQQL-------------  264 (311)
T ss_dssp             CEECC------CCCCCGGGCCGGGGGTCCSTHHHHHHHHHHHHHHHHTCCCCSSHH------HHHHH-------------
T ss_pred             eeecccCCCCcccCCCccccCHhHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcc------HHHHH-------------
Confidence            85431                     125678999999999999999987764311      01100             


Q ss_pred             HhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          537 LRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       537 ~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ......+    .++......+.+++.+||+.||++|||+.|+++.
T Consensus       265 ~~~~~~~----~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h  305 (311)
T 3p1a_A          265 RQGYLPP----EFTAGLSSELRSVLVMMLEPDPKLRATAEALLAL  305 (311)
T ss_dssp             TTTCCCH----HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             hccCCCc----ccccCCCHHHHHHHHHHcCCChhhCcCHHHHHhC
Confidence            0001111    1112234568999999999999999999999864

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=1.1e-33  Score=292.10  Aligned_cols=222  Identities=25%  Similarity=0.387  Sum_probs=173.2

Q ss_pred             ceEEEEEE-------CCeEEEEEEcc--------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI-------DGKVLAVKKIK--------EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~-------~g~~vAvK~~~--------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      |.||+|..       +++.||||.++        +.+.+|+.+++++ +||||+++++++.+. +..++||||+++|+|.
T Consensus        37 g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~  115 (313)
T 1t46_A           37 GKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIG-GPTLVITEYCCYGDLL  115 (313)
T ss_dssp             EEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS-SSCEEEEECCTTEEHH
T ss_pred             cceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecC-CCcEEEEecCCCCCHH
Confidence            58999985       46899999985        3477899999999 999999999998754 4789999999999999


Q ss_pred             HhhccCCCCCC--------CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCC
Q 047629          407 KWLHPKSKSSS--------SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA  478 (615)
Q Consensus       407 ~~L~~~~~~~~--------~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  478 (615)
                      +++........        .......+++.+++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++
T Consensus       116 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~  192 (313)
T 1t46_A          116 NFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNILLTHGRITKICDFGLA  192 (313)
T ss_dssp             HHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEETTTEEEECCCGGG
T ss_pred             HHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCccceEEEcCCCCEEEcccccc
Confidence            99976542100        0000123899999999999999999999998   999999999999999999999999998


Q ss_pred             CCCCC-------------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHH
Q 047629          479 APATN-------------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEK  532 (615)
Q Consensus       479 ~~~~~-------------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~  532 (615)
                      +....                         .++.++||||||+++|||++ |+.|+.........  .    .       
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~--~----~-------  259 (313)
T 1t46_A          193 RDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKF--Y----K-------  259 (313)
T ss_dssp             SCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHH--H----H-------
T ss_pred             ccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhHH--H----H-------
Confidence            65421                         13457999999999999999 99998765432211  1    0       


Q ss_pred             HHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          533 REERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       533 ~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                         .+.+...+.    .+......+.+++.+||+.||.+|||+.|+++.|+.+.+.
T Consensus       260 ---~~~~~~~~~----~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  308 (313)
T 1t46_A          260 ---MIKEGFRML----SPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE  308 (313)
T ss_dssp             ---HHHHTCCCC----CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ---HhccCCCCC----CcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence               111111111    1223345689999999999999999999999999877654

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=6.2e-33  Score=284.36  Aligned_cols=218  Identities=15%  Similarity=0.166  Sum_probs=172.1

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-----HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-----EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-----~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      |.||+|..  +|+.||||.+.     ..+.+|+.++.++ +|+|++++++++.+. ...++||||+ +|+|.+++.....
T Consensus        24 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~-~~~~lv~e~~-~~~L~~~l~~~~~  101 (298)
T 1csn_A           24 GVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEG-LHNVLVIDLL-GPSLEDLLDLCGR  101 (298)
T ss_dssp             CEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEET-TEEEEEEECC-CCBHHHHHHHTTT
T ss_pred             EEEEEEEECCCCcEEEEEEeccCCccHHHHHHHHHHHHHhcCCCCCeEEeecCCC-ceeEEEEEec-CCCHHHHHHHhcc
Confidence            58999995  79999999885     3588999999999 899999999998754 4789999999 9999999986542


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCc-----EEEeecCCCCCCC-------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK-----AKIANFSLAAPAT-------  482 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~-----~kl~DFGla~~~~-------  482 (615)
                               .+++.++..++.|++.||+|||+++   |+||||||+|||++.++.     +||+|||+++...       
T Consensus       102 ---------~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~  169 (298)
T 1csn_A          102 ---------KFSVKTVAMAAKQMLARVQSIHEKS---LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQH  169 (298)
T ss_dssp             ---------CCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCB
T ss_pred             ---------CCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEeccCCCCCCCeEEEEECcccccccccccccc
Confidence                     3899999999999999999999998   999999999999987766     9999999985421       


Q ss_pred             -----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhh
Q 047629          483 -----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRN  539 (615)
Q Consensus       483 -----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  539 (615)
                                             ..++.++||||||+++|||++|+.||..............+....     ......+
T Consensus       170 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~-----~~~~~~~  244 (298)
T 1csn_A          170 IPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKK-----QSTPLRE  244 (298)
T ss_dssp             CCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHH-----HHSCHHH
T ss_pred             ccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhc-----cCccHHH
Confidence                                   113568999999999999999999998755433322222111110     0000000


Q ss_pred             hcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          540 WMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       540 ~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                           +..    .....+.+++..||+.||++||++++|++.|+.+.+.
T Consensus       245 -----~~~----~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~  284 (298)
T 1csn_A          245 -----LCA----GFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLER  284 (298)
T ss_dssp             -----HTT----TSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             -----HHh----hCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHh
Confidence                 111    2234578999999999999999999999999988755

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.8e-33  Score=288.38  Aligned_cols=215  Identities=25%  Similarity=0.353  Sum_probs=170.3

Q ss_pred             ceEEEEEE--CC---eEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DG---KVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g---~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|..  ++   ..+|+|.++        +.+.+|+.++++++||||+++++++.+.++..++|+||+.+|+|.+++
T Consensus        35 g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~~  114 (298)
T 3pls_A           35 GVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFI  114 (298)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEECCCTTCBHHHHH
T ss_pred             ceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEEecccCCCHHHHH
Confidence            58999986  33   379999885        347789999999999999999999876655569999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------  483 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------  483 (615)
                      .....         .+++.++..++.|++.||+|||+++   ++||||||+|||++.++.+||+|||+++....      
T Consensus       115 ~~~~~---------~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~  182 (298)
T 3pls_A          115 RSPQR---------NPTVKDLISFGLQVARGMEYLAEQK---FVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSV  182 (298)
T ss_dssp             HCTTC---------CCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGGGCS
T ss_pred             hcccc---------CCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCcceEEEcCCCcEEeCcCCCcccccCCccccc
Confidence            76433         3899999999999999999999998   99999999999999999999999999864311      


Q ss_pred             ---------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          484 ---------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       484 ---------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                           .++.++||||||+++|||++|+.|+....+....  .              ..+.....
T Consensus       183 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~--~--------------~~~~~~~~  246 (298)
T 3pls_A          183 QQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDL--T--------------HFLAQGRR  246 (298)
T ss_dssp             CCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGH--H--------------HHHHTTCC
T ss_pred             ccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHH--H--------------HHhhcCCC
Confidence                                 2356899999999999999976665443322111  0              01111111


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      +    ..+......+.+++..||+.||.+|||++|+++.|+.+....
T Consensus       247 ~----~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l  289 (298)
T 3pls_A          247 L----PQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSAL  289 (298)
T ss_dssp             C----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             C----CCCccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHH
Confidence            1    122333456899999999999999999999999999886553

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=1.5e-33  Score=289.83  Aligned_cols=226  Identities=25%  Similarity=0.397  Sum_probs=170.9

Q ss_pred             ceEEEEEE------CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCC-CcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI------DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQ-GNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~------~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~-~~~~lV~E~~~~GsL~~  407 (615)
                      |.||++.+      +|+.||||+++        ..+.+|++++++++|+||+++++++.+.+ ...++||||+++|+|.+
T Consensus        35 g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~  114 (302)
T 4e5w_A           35 GKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKE  114 (302)
T ss_dssp             EEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCEEEEEECCTTCBHHH
T ss_pred             eEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceEEEEEEeCCCCcHHH
Confidence            58999984      68999999986        34788999999999999999999987643 35899999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC---
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND---  484 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~---  484 (615)
                      ++.....         .+++.+++.++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++.....   
T Consensus       115 ~l~~~~~---------~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  182 (302)
T 4e5w_A          115 YLPKNKN---------KINLKQQLKYAVQICKGMDYLGSRQ---YVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEY  182 (302)
T ss_dssp             HHHHHTT---------TCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCEECCTTCCE
T ss_pred             HHHhccc---------cCCHHHHHHHHHHHHHHHHHhhcCC---cccCCCchheEEEcCCCCEEECcccccccccCCCcc
Confidence            9965432         3899999999999999999999998   999999999999999999999999998643211   


Q ss_pred             -----------------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          485 -----------------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       485 -----------------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                             ++.++||||||+++|||++|+.|+.....    .... ........ .....+...+
T Consensus       183 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~-~~~~~~~~-~~~~~~~~~~  256 (302)
T 4e5w_A          183 YTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMA----LFLK-MIGPTHGQ-MTVTRLVNTL  256 (302)
T ss_dssp             EECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHH----HHHH-HHCSCCGG-GHHHHHHHHH
T ss_pred             eeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhh----HHhh-ccCCcccc-cCHHHHHHHH
Confidence                                   23478999999999999999988643210    0000 00000000 0011111111


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcc
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLT  586 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~  586 (615)
                      ........+......+.+++..||+.||.+|||+.|+++.|+.+.
T Consensus       257 ~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll  301 (302)
T 4e5w_A          257 KEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL  301 (302)
T ss_dssp             HTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             hccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence            111222234445567899999999999999999999999998764

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=1.1e-33  Score=293.90  Aligned_cols=220  Identities=22%  Similarity=0.349  Sum_probs=165.9

Q ss_pred             ceEEEEEEC--Ce---EEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCCCc-----EEEEEeecCCC
Q 047629          343 KSVYRATID--GK---VLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQGN-----RFLVYEYAENG  403 (615)
Q Consensus       343 ~~Vy~~~~~--g~---~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~-----~~lV~E~~~~G  403 (615)
                      |.||+|...  ++   .||||.++.         .+.+|++++++++||||+++++++...+..     .++||||+++|
T Consensus        37 g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~  116 (323)
T 3qup_A           37 GSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHG  116 (323)
T ss_dssp             EEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-------CEEEEEECCTTC
T ss_pred             eEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccccCCCccEEEEEeccCC
Confidence            589999872  32   799999863         477899999999999999999998754321     38999999999


Q ss_pred             CHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC
Q 047629          404 SLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN  483 (615)
Q Consensus       404 sL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~  483 (615)
                      +|.+++.......    ....+++.+++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++....
T Consensus       117 ~L~~~l~~~~~~~----~~~~~~~~~~~~i~~qi~~al~~LH~~~---ivH~Dikp~NIli~~~~~~kl~Dfg~a~~~~~  189 (323)
T 3qup_A          117 DLHAFLLASRIGE----NPFNLPLQTLVRFMVDIACGMEYLSSRN---FIHRDLAARNCMLAEDMTVCVADFGLSRKIYS  189 (323)
T ss_dssp             BHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTSCEEECCCCC------
T ss_pred             cHHHHHHhhhccc----cccccCHHHHHHHHHHHHHHHHHHHcCC---cccCCCCcceEEEcCCCCEEEeeccccccccc
Confidence            9999996543211    0113899999999999999999999998   99999999999999999999999999865311


Q ss_pred             -------------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHH
Q 047629          484 -------------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERL  537 (615)
Q Consensus       484 -------------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  537 (615)
                                               .++.++||||||+++|||++ |+.|+......+..   .              .+
T Consensus       190 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~---~--------------~~  252 (323)
T 3qup_A          190 GDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIY---N--------------YL  252 (323)
T ss_dssp             -----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHH---H--------------HH
T ss_pred             cccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHHH---H--------------HH
Confidence                                     14568999999999999999 89998765432211   0              01


Q ss_pred             hhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchh
Q 047629          538 RNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE  590 (615)
Q Consensus       538 ~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~  590 (615)
                      .....    ...+......+.+++.+||+.||++|||+.|+++.|+.+.....
T Consensus       253 ~~~~~----~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~  301 (323)
T 3qup_A          253 IGGNR----LKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLS  301 (323)
T ss_dssp             HTTCC----CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC--
T ss_pred             hcCCC----CCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhh
Confidence            11111    12233444568999999999999999999999999998876653

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=9.9e-34  Score=295.12  Aligned_cols=231  Identities=26%  Similarity=0.348  Sum_probs=173.4

Q ss_pred             ceEEEEEE------CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcC-CCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI------DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDS-QGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~------~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~-~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||++.+      +|+.||||+++       +.+.+|++++++++|+||+++++++... +...++||||+++|+|.++
T Consensus        37 g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~  116 (327)
T 3lxl_A           37 GSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDF  116 (327)
T ss_dssp             EEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEEEEEECCTTCBHHHH
T ss_pred             eEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEEEEEeecCCCCHHHH
Confidence            58999984      57899999985       3478999999999999999999998743 3358899999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC----
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND----  484 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~----  484 (615)
                      +.....         .+++.+++.++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++.....    
T Consensus       117 l~~~~~---------~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~  184 (327)
T 3lxl_A          117 LQRHRA---------RLDASRLLLYSSQICKGMEYLGSRR---CVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYY  184 (327)
T ss_dssp             HHHHGG---------GCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCGGGCEECCTTCSEE
T ss_pred             HHhccc---------CCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCChhhEEECCCCCEEEcccccceecccCCccc
Confidence            976432         3899999999999999999999998   999999999999999999999999998643211    


Q ss_pred             ----------------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          485 ----------------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       485 ----------------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                            ++.++||||||+++|||++|+.|+.......    ........  .......+.+.+.
T Consensus       185 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~  258 (327)
T 3lxl_A          185 VVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEF----LRMMGCER--DVPALSRLLELLE  258 (327)
T ss_dssp             ECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHH----HHHCC------CCHHHHHHHHHH
T ss_pred             eeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchh----hhhccccc--ccccHHHHHHHhh
Confidence                                  2458999999999999999999986432100    00000000  0000011222222


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchhh
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTET  591 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~~  591 (615)
                      .......+......+.+++..||+.||++|||++|+++.|+.+......
T Consensus       259 ~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~  307 (327)
T 3lxl_A          259 EGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSRG  307 (327)
T ss_dssp             TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC------
T ss_pred             cccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhcC
Confidence            2222334455566789999999999999999999999999988766543

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=3.2e-33  Score=286.26  Aligned_cols=211  Identities=26%  Similarity=0.408  Sum_probs=171.5

Q ss_pred             ceEEEEEE----CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI----DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~----~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|.+    .++.||||.++         +.+.+|++++++++||||+++++++.  ++..++||||+++|+|.+++
T Consensus        31 g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~--~~~~~lv~e~~~~~~L~~~l  108 (291)
T 1xbb_A           31 GTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE--AESWMLVMEMAELGPLNKYL  108 (291)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEE--SSSEEEEEECCTTEEHHHHH
T ss_pred             eeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEC--CCCcEEEEEeCCCCCHHHHH
Confidence            58999965    46889999985         24778999999999999999999984  34789999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------  483 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------  483 (615)
                      ....          .+++.+++.++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++....      
T Consensus       109 ~~~~----------~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  175 (291)
T 1xbb_A          109 QQNR----------HVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK  175 (291)
T ss_dssp             HHCT----------TCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEE
T ss_pred             HhCc----------CCCHHHHHHHHHHHHHHHHHHHhCC---eEcCCCCcceEEEeCCCcEEEccCCcceeeccCCCccc
Confidence            8653          2899999999999999999999998   99999999999999999999999999864321      


Q ss_pred             --------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          484 --------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       484 --------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                          .++.++||||||+++|||++ |+.|+......+       +.          ..+.....
T Consensus       176 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~-------~~----------~~~~~~~~  238 (291)
T 1xbb_A          176 AQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE-------VT----------AMLEKGER  238 (291)
T ss_dssp             C----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH-------HH----------HHHHTTCC
T ss_pred             ccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHH-------HH----------HHHHcCCC
Confidence                                12347999999999999999 999987543211       01          01111111


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      +    ..+......+.+++..||+.||.+||++.|+++.|+.+....
T Consensus       239 ~----~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~  281 (291)
T 1xbb_A          239 M----GCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDV  281 (291)
T ss_dssp             C----CCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred             C----CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHH
Confidence            2    223344556899999999999999999999999999887654

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=2.4e-33  Score=292.32  Aligned_cols=207  Identities=23%  Similarity=0.333  Sum_probs=165.7

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||++..  +|+.||||.+.        +.+.+|+.++++++|+||+++++++.+. +..++||||+++|+|.+++...
T Consensus        21 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~   99 (323)
T 3tki_A           21 GEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREG-NIQYLFLEYCSGGELFDRIEPD   99 (323)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEEEEECCTTEEGGGGSBTT
T ss_pred             EEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecC-CeEEEEEEcCCCCcHHHHHhhc
Confidence            58999987  68999999874        3477899999999999999999998754 4789999999999999999764


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                      .          .+++.++..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...          
T Consensus       100 ~----------~~~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  166 (323)
T 3tki_A          100 I----------GMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK  166 (323)
T ss_dssp             T----------BCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCS
T ss_pred             C----------CCCHHHHHHHHHHHHHHHHHHHHCC---ccccccchHHEEEeCCCCEEEEEeeccceeccCCcccccCC
Confidence            3          3899999999999999999999998   9999999999999999999999999986421          


Q ss_pred             ---------------CC-CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          483 ---------------ND-VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ---------------~~-~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                     .. .+.++|||||||++|||++|+.||.......... ..                  +......
T Consensus       167 ~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~-~~------------------~~~~~~~  227 (323)
T 3tki_A          167 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY-SD------------------WKEKKTY  227 (323)
T ss_dssp             CCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHH-HH------------------HHTTCTT
T ss_pred             CccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHH-HH------------------Hhccccc
Confidence                           01 2457999999999999999999997654322110 00                  0000000


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      ..........+.+|+.+||+.||++|||+.|+++.-
T Consensus       228 ~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h~  263 (323)
T 3tki_A          228 LNPWKKIDSAPLALLHKILVENPSARITIPDIKKDR  263 (323)
T ss_dssp             STTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCT
T ss_pred             CCccccCCHHHHHHHHHHccCChhhCcCHHHHhhCh
Confidence            011123344578999999999999999999998863

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=9.7e-34  Score=292.89  Aligned_cols=235  Identities=26%  Similarity=0.388  Sum_probs=179.0

Q ss_pred             ccccccccccc----ceEEEEEE-------CCeEEEEEEccH--------HHHHHHHHHHhc-CCCCcccEEEEEEcCCC
Q 047629          332 TMNLSEHYSIG----KSVYRATI-------DGKVLAVKKIKE--------DVTEELRILQRI-NHANLVKLMGVSSDSQG  391 (615)
Q Consensus       332 t~~~~~~~~iG----~~Vy~~~~-------~g~~vAvK~~~~--------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~  391 (615)
                      ..+|.-...+|    |.||++..       +++.||||.++.        .+.+|+.++.++ +||||+++++++...++
T Consensus        26 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~  105 (316)
T 2xir_A           26 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG  105 (316)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTS
T ss_pred             hhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCCC
Confidence            34444444554    58999984       458999999852        477899999999 79999999999876555


Q ss_pred             cEEEEEeecCCCCHHHhhccCCCCCCC------CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeC
Q 047629          392 NRFLVYEYAENGSLDKWLHPKSKSSSS------SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD  465 (615)
Q Consensus       392 ~~~lV~E~~~~GsL~~~L~~~~~~~~~------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld  465 (615)
                      ..++||||+++|+|.+++.........      ......+++..++.++.|++.||.|||+++   |+||||||+||+++
T Consensus       106 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---i~H~dikp~Nil~~  182 (316)
T 2xir_A          106 PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILLS  182 (316)
T ss_dssp             CCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEC
T ss_pred             ceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCC---cccccCccceEEEC
Confidence            689999999999999999865431000      000112889999999999999999999998   99999999999999


Q ss_pred             CCCcEEEeecCCCCCCCC-------------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHH
Q 047629          466 SRFKAKIANFSLAAPATN-------------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVL  519 (615)
Q Consensus       466 ~~~~~kl~DFGla~~~~~-------------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l  519 (615)
                      .++.+||+|||+++....                         .++.++||||||+++|||++ |+.|+.........  
T Consensus       183 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~--  260 (316)
T 2xir_A          183 EKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEF--  260 (316)
T ss_dssp             GGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHH--
T ss_pred             CCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHHH--
Confidence            999999999999865321                         13568999999999999998 99998765432211  


Q ss_pred             HHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          520 WKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      ..              .+.....+..    +......+.+++..||+.||.+|||+.|+++.|+.+.+..
T Consensus       261 ~~--------------~~~~~~~~~~----~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~  312 (316)
T 2xir_A          261 CR--------------RLKEGTRMRA----PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN  312 (316)
T ss_dssp             HH--------------HHHHTCCCCC----CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HH--------------HhccCccCCC----CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhh
Confidence            10              1111111112    2223446889999999999999999999999999887543

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=1.6e-33  Score=286.90  Aligned_cols=213  Identities=26%  Similarity=0.342  Sum_probs=170.3

Q ss_pred             ceEEEEEEC-----CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATID-----GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~~-----g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|...     +..||||.++        +.+.+|+.++++++||||+++++++.+  +..++||||+++|+|.+++
T Consensus        26 g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~--~~~~~v~e~~~~~~L~~~l  103 (281)
T 3cc6_A           26 GEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE--EPTWIIMELYPYGELGHYL  103 (281)
T ss_dssp             SEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS--SSCEEEEECCTTCBHHHHH
T ss_pred             eeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC--CCCEEEEecCCCCCHHHHH
Confidence            589999862     2469999985        347789999999999999999999753  3579999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------  483 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------  483 (615)
                      .....         .+++..+..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++....      
T Consensus       104 ~~~~~---------~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  171 (281)
T 3cc6_A          104 ERNKN---------SLKVLTLVLYSLQICKAMAYLESIN---CVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKA  171 (281)
T ss_dssp             HHHTT---------TCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEEEETTEEEECCCCGGGCC--------
T ss_pred             Hhccc---------cCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCccceEEECCCCcEEeCccCCCccccccccccc
Confidence            76432         3899999999999999999999998   99999999999999999999999999864321      


Q ss_pred             ------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCc
Q 047629          484 ------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPN  544 (615)
Q Consensus       484 ------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~  544 (615)
                                        .++.++||||||+++|||++ |+.||......+..   .              .+.....+.
T Consensus       172 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~---~--------------~~~~~~~~~  234 (281)
T 3cc6_A          172 SVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVI---G--------------VLEKGDRLP  234 (281)
T ss_dssp             -CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHH---H--------------HHHHTCCCC
T ss_pred             ccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHH---H--------------HHhcCCCCC
Confidence                              23557999999999999998 99999754432211   0              011111111


Q ss_pred             CCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchh
Q 047629          545 LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE  590 (615)
Q Consensus       545 l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~  590 (615)
                          .+......+.+++.+||+.||++||++.|+++.|+.+.+...
T Consensus       235 ----~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~  276 (281)
T 3cc6_A          235 ----KPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQMEK  276 (281)
T ss_dssp             ----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             ----CCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHhhh
Confidence                122334568899999999999999999999999998876544

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=2.9e-33  Score=287.19  Aligned_cols=213  Identities=27%  Similarity=0.413  Sum_probs=169.0

Q ss_pred             ceEEEEEEC-----CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATID-----GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~~-----g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|...     +..+|+|.++        +.+.+|+.++++++||||+++++++.+.++..++||||+++|+|.+++
T Consensus        39 g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~l  118 (298)
T 3f66_A           39 GCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFI  118 (298)
T ss_dssp             EEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEEECCTTCBHHHHH
T ss_pred             ceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEEEEeCCCCCCHHHHH
Confidence            589999862     2368999875        347789999999999999999999876666789999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------  483 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------  483 (615)
                      .....         .+++..++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++....      
T Consensus       119 ~~~~~---------~~~~~~~~~i~~ql~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~  186 (298)
T 3f66_A          119 RNETH---------NPTVKDLIGFGLQVAKGMKYLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSV  186 (298)
T ss_dssp             HCTTC---------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGGCBC
T ss_pred             Hhccc---------CCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCchheEEECCCCCEEECcccccccccccchhcc
Confidence            76443         3899999999999999999999998   99999999999999999999999999864311      


Q ss_pred             ---------------------CCCCcccchhHHHHHHHHHcCC-CCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          484 ---------------------DVMPKFDVFAFGVVLLELLSGK-KATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       484 ---------------------~~~~k~DV~SfGvvl~ElltG~-~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                           .++.++||||||+++|||++|. .|+......+...                 .+....
T Consensus       187 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~  249 (298)
T 3f66_A          187 HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITV-----------------YLLQGR  249 (298)
T ss_dssp             -----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHH-----------------HHHTTC
T ss_pred             ccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHH-----------------HHhcCC
Confidence                                 2356899999999999999955 4554433221110                 011111


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      .+    ..+......+.+++..||+.||++|||++|+++.|+.+...
T Consensus       250 ~~----~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~  292 (298)
T 3f66_A          250 RL----LQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFST  292 (298)
T ss_dssp             CC----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             CC----CCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            11    11222344689999999999999999999999999988754

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=295.09  Aligned_cols=235  Identities=22%  Similarity=0.351  Sum_probs=167.0

Q ss_pred             ceEEEEEECCeEEEEEEcc----HHHHHHHHHH--HhcCCCCcccEEEEEEc----CCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATIDGKVLAVKKIK----EDVTEELRIL--QRINHANLVKLMGVSSD----SQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~----~~~~~Ei~~l--~~l~H~niv~l~g~~~~----~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||+|..+|+.||||+++    ..+..|.+++  ..++|+||+++++.+..    .....++||||+++|+|.+++...
T Consensus        27 g~Vy~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~  106 (336)
T 3g2f_A           27 GAVYKGSLDERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLH  106 (336)
T ss_dssp             EEEEEEEETTEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEEECCCTTCBHHHHHHHC
T ss_pred             eEEEEEEECCeEEEEEEeeccchhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEEEecCCCCcHHHHHhhc
Confidence            5899999999999999986    3345555554  45899999999986532    122468999999999999999754


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCC------CCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC---
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA------QPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN---  483 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~------~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~---  483 (615)
                      .           ++|..+..++.|++.||.|||++.      .++|+||||||+|||++.++.+||+|||+++....   
T Consensus       107 ~-----------~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~  175 (336)
T 3g2f_A          107 T-----------SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRL  175 (336)
T ss_dssp             C-----------BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEECSSSSC
T ss_pred             c-----------cchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeeccceeecccccc
Confidence            3           689999999999999999999981      11299999999999999999999999999964311   


Q ss_pred             -----------------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChh--HHHHHHHHHH
Q 047629          484 -----------------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKT--AVLWKEIREV  526 (615)
Q Consensus       484 -----------------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~--~~l~~~~~~~  526 (615)
                                                         .++.++|||||||++|||++|+.|+........  ..........
T Consensus       176 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~  255 (336)
T 3g2f_A          176 VRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNH  255 (336)
T ss_dssp             C---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSS
T ss_pred             cCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCC
Confidence                                               012368999999999999999877654332111  0000000000


Q ss_pred             HhHHHHHHHHHhhhcCCcCCCCCC--hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          527 LKVEEKREERLRNWMDPNLESFYP--IDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       527 ~~~~~~~~~~~~~~~dp~l~~~~~--~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      ................+.+...++  ......+.+|+.+||+.||++|||++|+++.|+.+...
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~  319 (336)
T 3g2f_A          256 PTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMI  319 (336)
T ss_dssp             CCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             chHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHH
Confidence            000000011111222233322222  23566799999999999999999999999999988754

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.3e-33  Score=290.18  Aligned_cols=209  Identities=20%  Similarity=0.233  Sum_probs=166.5

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      |.||++..  +|+.+|+|.++      ..+.+|+.+|++++||||+++++++.+. +..++||||+++|+|.+++.....
T Consensus        19 g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~-~~~~lv~e~~~g~~L~~~l~~~~~   97 (321)
T 1tki_A           19 GIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESM-EELVMIFEFISGLDIFERINTSAF   97 (321)
T ss_dssp             EEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEET-TEEEEEECCCCCCBHHHHHTSSSC
T ss_pred             eEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhCCCCCCCeEeEEEecC-CEEEEEEEeCCCCCHHHHHHhcCC
Confidence            58999998  68999999885      3477899999999999999999998764 479999999999999999976432


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC--CCcEEEeecCCCCCCCC---------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS--RFKAKIANFSLAAPATN---------  483 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~--~~~~kl~DFGla~~~~~---------  483 (615)
                               .+++.++..++.|++.||.|||+++   |+||||||+|||++.  ++.+||+|||+++....         
T Consensus        98 ---------~~~~~~~~~i~~qi~~al~~lH~~g---ivH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~g  165 (321)
T 1tki_A           98 ---------ELNEREIVSYVHQVCEALQFLHSHN---IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFT  165 (321)
T ss_dssp             ---------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEES
T ss_pred             ---------CCCHHHHHHHHHHHHHHHHHHHHCC---CCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCccccccC
Confidence                     3899999999999999999999998   999999999999997  78999999999965421         


Q ss_pred             -------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          484 -------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       484 -------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                   .++.++|||||||++|||++|+.||......+   ..   ...          .....+  ......
T Consensus       166 t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~---~~---~~i----------~~~~~~--~~~~~~  227 (321)
T 1tki_A          166 APEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQ---II---ENI----------MNAEYT--FDEEAF  227 (321)
T ss_dssp             CGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHH---HH---HHH----------HHTCCC--CCHHHH
T ss_pred             ChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHH---HH---HHH----------HcCCCC--CChhhh
Confidence                         13568999999999999999999997643211   11   110          000000  000000


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      .+....+.+++.+|++.||.+|||+.|++++-
T Consensus       228 ~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~hp  259 (321)
T 1tki_A          228 KEISIEAMDFVDRLLVKERKSRMTASEALQHP  259 (321)
T ss_dssp             TTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSH
T ss_pred             ccCCHHHHHHHHHHcCCChhHCcCHHHHhcCh
Confidence            12234578999999999999999999999853

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=2.2e-33  Score=286.60  Aligned_cols=213  Identities=21%  Similarity=0.348  Sum_probs=166.5

Q ss_pred             ceEEEEEE--CC-------eEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI--DG-------KVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~--~g-------~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      |.||+|..  +|       +.||+|.++       +.+.+|++++++++||||+++++++.+. +..++||||+++|+|.
T Consensus        22 g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~  100 (289)
T 4fvq_A           22 TKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCG-DENILVQEFVKFGSLD  100 (289)
T ss_dssp             EEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCT-TCCEEEEECCTTCBHH
T ss_pred             ceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeC-CCCEEEEECCCCCCHH
Confidence            58999987  33       579999985       3578899999999999999999998754 4789999999999999


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCc--------EEEeecCCC
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK--------AKIANFSLA  478 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~--------~kl~DFGla  478 (615)
                      +++.....         .+++..++.++.|++.||.|||+++   |+||||||+|||++.++.        +||+|||++
T Consensus       101 ~~l~~~~~---------~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~  168 (289)
T 4fvq_A          101 TYLKKNKN---------CINILWKLEVAKQLAAAMHFLEENT---LIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGIS  168 (289)
T ss_dssp             HHHHHTGG---------GCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSC
T ss_pred             HHHHhCCC---------CCCHHHHHHHHHHHHHHHHHHhhCC---eECCCcCcceEEEecCCcccccccceeeeccCccc
Confidence            99986542         3899999999999999999999998   999999999999998887        999999998


Q ss_pred             CCCC--------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHh
Q 047629          479 APAT--------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLR  538 (615)
Q Consensus       479 ~~~~--------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  538 (615)
                      +...                    ..++.++||||||+++|||++|..|+.........      ..          ...
T Consensus       169 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~------~~----------~~~  232 (289)
T 4fvq_A          169 ITVLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRK------LQ----------FYE  232 (289)
T ss_dssp             TTTSCHHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHH------HH----------HHH
T ss_pred             ccccCccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHH------HH----------Hhh
Confidence            6542                    22567899999999999999966554433221110      00          000


Q ss_pred             hhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchh
Q 047629          539 NWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE  590 (615)
Q Consensus       539 ~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~  590 (615)
                        ..+.+    +......+.+++..||+.||++|||+.|+++.|+.+..+..
T Consensus       233 --~~~~~----~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p~~  278 (289)
T 4fvq_A          233 --DRHQL----PAPKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTPDL  278 (289)
T ss_dssp             --TTCCC----CCCSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC----
T ss_pred             --ccCCC----CCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCC
Confidence              01111    11122347899999999999999999999999999987654

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=1.4e-32  Score=284.78  Aligned_cols=222  Identities=22%  Similarity=0.311  Sum_probs=166.4

Q ss_pred             ceEEEEEE-CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI-DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||++.. +|+.||||+++         ..+.+|++++++++||||+++++++.+. ...++||||++ |+|.+++...
T Consensus        35 g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~~lv~e~~~-~~l~~~~~~~  112 (311)
T 3niz_A           35 GVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSE-RCLTLVFEFME-KDLKKVLDEN  112 (311)
T ss_dssp             CEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCS-SCEEEEEECCS-EEHHHHHHTC
T ss_pred             eEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccC-CEEEEEEcCCC-CCHHHHHHhc
Confidence            58999998 78999999986         2467899999999999999999998654 47999999998 5888888765


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                      ..         .+++.++..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...          
T Consensus       113 ~~---------~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  180 (311)
T 3niz_A          113 KT---------GLQDSQIKIYLYQLLRGVAHCHQHR---ILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEV  180 (311)
T ss_dssp             TT---------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC---CCC
T ss_pred             cC---------CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCchHhEEECCCCCEEEccCcCceecCCCcccccCCc
Confidence            43         3899999999999999999999998   9999999999999999999999999985421          


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHH----HHHHHhhhcCCc
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEK----REERLRNWMDPN  544 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~dp~  544 (615)
                                    ..++.++|||||||++|||++|+.||......+....   +...+.....    ....+..+.+..
T Consensus       181 ~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~  257 (311)
T 3niz_A          181 VTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPK---IFSILGTPNPREWPQVQELPLWKQRT  257 (311)
T ss_dssp             CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHH---HHHHHCCCCTTTSGGGTTSHHHHSCC
T ss_pred             ccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHH---HHHHHCCCChHHhhhhhccchhhhcc
Confidence                          1246789999999999999999999986654332211   1111100000    000000000000


Q ss_pred             C--CCCC-----ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          545 L--ESFY-----PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       545 l--~~~~-----~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .  ....     .......+.+|+.+|++.||++|||++|++++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  301 (311)
T 3niz_A          258 FQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNH  301 (311)
T ss_dssp             CCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             cccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence            0  0000     11123467899999999999999999999874

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-33  Score=293.77  Aligned_cols=212  Identities=21%  Similarity=0.393  Sum_probs=168.8

Q ss_pred             ceEEEEEE--CCeE----EEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGKV----LAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~~----vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||+|..  +|+.    ||+|.++        ..+.+|+.++++++||||+++++++...  ..++|+||+++|+|.++
T Consensus        29 g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--~~~~v~~~~~~g~L~~~  106 (327)
T 3lzb_A           29 GTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS--TVQLITQLMPFGCLLDY  106 (327)
T ss_dssp             EEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESS--SEEEEECCCSSCBHHHH
T ss_pred             eEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecC--CceEEEEecCCCcHHHH
Confidence            58999997  4543    5778763        4588999999999999999999998753  58899999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-----
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-----  483 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-----  483 (615)
                      +.....         .+++..++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++....     
T Consensus       107 l~~~~~---------~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~~~~  174 (327)
T 3lzb_A          107 VREHKD---------NIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY  174 (327)
T ss_dssp             HHHTTT---------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEETTEEEECCTTC-----------
T ss_pred             HHhcCC---------CCCHHHHHHHHHHHHHHHHHHhhCC---CcCCCCCHHHEEEcCCCCEEEccCcceeEccCccccc
Confidence            987543         3899999999999999999999998   99999999999999999999999999965311     


Q ss_pred             --------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          484 --------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       484 --------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                          .++.++||||||+++|||++ |+.||......+...                 .+.... 
T Consensus       175 ~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~-----------------~~~~~~-  236 (327)
T 3lzb_A          175 HAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISS-----------------ILEKGE-  236 (327)
T ss_dssp             -----CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHH-----------------HHHTTC-
T ss_pred             cccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH-----------------HHHcCC-
Confidence                                14568999999999999999 999997654322110                 111111 


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                         ....+......+.+++..||+.||.+||++.|+++.|+.+....
T Consensus       237 ---~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~  280 (327)
T 3lzb_A          237 ---RLPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARDP  280 (327)
T ss_dssp             ---CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTSH
T ss_pred             ---CCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhCc
Confidence               11223334556899999999999999999999999999887654

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=7.9e-33  Score=288.70  Aligned_cols=207  Identities=25%  Similarity=0.344  Sum_probs=165.5

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||++..  +|+.||||.++             +.+.+|+.+|++++||||+++++++.+. ...++||||+++|+|.+
T Consensus        25 g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~  103 (326)
T 2y0a_A           25 AVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENK-TDVILILELVAGGELFD  103 (326)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEEEEECCCSCBHHH
T ss_pred             eEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeC-CEEEEEEEcCCCCCHHH
Confidence            58999998  68999999874             3478999999999999999999998754 47999999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC----cEEEeecCCCCCCC-
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF----KAKIANFSLAAPAT-  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~----~~kl~DFGla~~~~-  482 (615)
                      ++....          .+++.++..++.|++.||.|||+++   |+||||||+|||++.++    .+||+|||+++... 
T Consensus       104 ~l~~~~----------~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~  170 (326)
T 2y0a_A          104 FLAEKE----------SLTEEEATEFLKQILNGVYYLHSLQ---IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF  170 (326)
T ss_dssp             HHTTSS----------CCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCT
T ss_pred             HHHhcC----------CcCHHHHHHHHHHHHHHHHHHHHCC---eEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCC
Confidence            997543          3899999999999999999999998   99999999999999887    89999999986432 


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                           ..++.++|||||||++|||++|+.||......+.   ..   .           +.. .
T Consensus       171 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~---~~---~-----------~~~-~  232 (326)
T 2y0a_A          171 GNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQET---LA---N-----------VSA-V  232 (326)
T ss_dssp             TSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHH---HH---H-----------HHH-T
T ss_pred             CCccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHH---HH---H-----------HHh-c
Confidence                                 1245689999999999999999999975432111   10   0           000 0


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .......+.......+.+++.+||+.||++|||+.|++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  272 (326)
T 2y0a_A          233 NYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH  272 (326)
T ss_dssp             CCCCCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             CCCcCccccccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            1111111111223457899999999999999999999985

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=6e-33  Score=290.20  Aligned_cols=222  Identities=24%  Similarity=0.427  Sum_probs=171.7

Q ss_pred             ceEEEEEE---------CCeEEEEEEccH--------HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCC
Q 047629          343 KSVYRATI---------DGKVLAVKKIKE--------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGS  404 (615)
Q Consensus       343 ~~Vy~~~~---------~g~~vAvK~~~~--------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~Gs  404 (615)
                      |.||+|..         +++.||||+++.        .+.+|+++++++ +||||+++++++.+. +..++||||+++|+
T Consensus        49 g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~-~~~~lv~e~~~~~~  127 (334)
T 2pvf_A           49 GQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD-GPLYVIVEYASKGN  127 (334)
T ss_dssp             CEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS-SCCEEEEECCTTCB
T ss_pred             eeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC-CceEEEEECCCCCc
Confidence            58999986         357899999862        477899999999 999999999998754 47899999999999


Q ss_pred             HHHhhccCCCCCCCC------CcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCC
Q 047629          405 LDKWLHPKSKSSSSS------GSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA  478 (615)
Q Consensus       405 L~~~L~~~~~~~~~~------~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  478 (615)
                      |.+++..........      .....+++.+++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++
T Consensus       128 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~Dfg~~  204 (334)
T 2pvf_A          128 LREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLVTENNVMKIADFGLA  204 (334)
T ss_dssp             HHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred             HHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCccceEEEcCCCCEEEcccccc
Confidence            999998654211000      00123899999999999999999999998   999999999999999999999999998


Q ss_pred             CCCCC-------------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHH
Q 047629          479 APATN-------------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEK  532 (615)
Q Consensus       479 ~~~~~-------------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~  532 (615)
                      +....                         .++.++||||||+++|||++ |+.|+......+   +.    .       
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~---~~----~-------  270 (334)
T 2pvf_A          205 RDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE---LF----K-------  270 (334)
T ss_dssp             EECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH---HH----H-------
T ss_pred             ccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHH---HH----H-------
Confidence            64321                         13457999999999999999 999987543111   11    0       


Q ss_pred             HHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          533 REERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       533 ~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                         .+.....+.    .+......+.+++.+||+.||.+||++.|+++.|+.+....
T Consensus       271 ---~~~~~~~~~----~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~  320 (334)
T 2pvf_A          271 ---LLKEGHRMD----KPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLT  320 (334)
T ss_dssp             ---HHHHTCCCC----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             ---HHhcCCCCC----CCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhcc
Confidence               111111111    23334456899999999999999999999999999887653

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=4.6e-33  Score=290.11  Aligned_cols=222  Identities=29%  Similarity=0.497  Sum_probs=172.5

Q ss_pred             ceEEEEEE--CCeEE--EEEEccH--------HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVL--AVKKIKE--------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~v--AvK~~~~--------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||++..  +|+.+  |||.++.        .+.+|++++.++ +||||+++++++.+. +..++||||+++|+|.+++
T Consensus        39 g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l  117 (327)
T 1fvr_A           39 GQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHR-GYLYLAIEYAPHGNLLDFL  117 (327)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEET-TEEEEEECCCTTCBHHHHH
T ss_pred             ceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeC-CceEEEEecCCCCCHHHHH
Confidence            58999987  66654  9998852        477899999999 999999999998764 4799999999999999999


Q ss_pred             ccCCCCCCC------CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-
Q 047629          410 HPKSKSSSS------SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-  482 (615)
Q Consensus       410 ~~~~~~~~~------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-  482 (615)
                      .........      ......+++.+++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++... 
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~~~~~~kL~Dfg~~~~~~~  194 (327)
T 1fvr_A          118 RKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVGENYVAKIADFGLSRGQEV  194 (327)
T ss_dssp             HTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECGGGCEEECCTTCEESSCE
T ss_pred             HhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCccceEEEcCCCeEEEcccCcCccccc
Confidence            765300000      000014899999999999999999999998   9999999999999999999999999985321 


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhh
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNW  540 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  540 (615)
                                           ..++.++||||||+++|||++ |+.||......+       +.          ..+...
T Consensus       195 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~-------~~----------~~~~~~  257 (327)
T 1fvr_A          195 YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE-------LY----------EKLPQG  257 (327)
T ss_dssp             ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH-------HH----------HHGGGT
T ss_pred             cccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHH-------HH----------HHhhcC
Confidence                                 113568999999999999998 999997543110       00          111111


Q ss_pred             cCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          541 MDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       541 ~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      ..+    ..+......+.+++.+||+.||.+|||+.|+++.|..+.+..
T Consensus       258 ~~~----~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~  302 (327)
T 1fvr_A          258 YRL----EKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEER  302 (327)
T ss_dssp             CCC----CCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred             CCC----CCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhh
Confidence            111    223344456899999999999999999999999999876654

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=4.4e-33  Score=294.96  Aligned_cols=222  Identities=17%  Similarity=0.216  Sum_probs=167.9

Q ss_pred             ceEEEEEEC-------CeEEEEEEccH---HHH---------------HHHHHHHhcCCCCcccEEEEEEcCC---CcEE
Q 047629          343 KSVYRATID-------GKVLAVKKIKE---DVT---------------EELRILQRINHANLVKLMGVSSDSQ---GNRF  394 (615)
Q Consensus       343 ~~Vy~~~~~-------g~~vAvK~~~~---~~~---------------~Ei~~l~~l~H~niv~l~g~~~~~~---~~~~  394 (615)
                      |.||+|...       ++.||||.+..   .+.               .|+..+.+++|+||+++++++....   ...+
T Consensus        49 g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~~  128 (364)
T 3op5_A           49 GCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRF  128 (364)
T ss_dssp             CEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEEEEEEEEETTEEEEE
T ss_pred             eEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEEeeeeeccCCcceEE
Confidence            589999872       47899999752   222               3455566678999999999986532   2379


Q ss_pred             EEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeC--CCCcEEE
Q 047629          395 LVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD--SRFKAKI  472 (615)
Q Consensus       395 lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld--~~~~~kl  472 (615)
                      +||||+ +|+|.+++.....         .+++.+++.|+.|++.||+|||+++   |+||||||+|||++  .++.+||
T Consensus       129 lv~e~~-g~~L~~~~~~~~~---------~l~~~~~~~i~~qi~~~l~~lH~~~---iiHrDlkp~Nill~~~~~~~~kl  195 (364)
T 3op5_A          129 MIMDRF-GSDLQKIYEANAK---------RFSRKTVLQLSLRILDILEYIHEHE---YVHGDIKASNLLLNYKNPDQVYL  195 (364)
T ss_dssp             EEEECE-EEEHHHHHHHTTS---------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEESSCTTCEEE
T ss_pred             EEEeCC-CCCHHHHHHhccC---------CCCHHHHHHHHHHHHHHHHHHHHCC---eEEecCCHHHEEEecCCCCeEEE
Confidence            999999 9999999976532         3999999999999999999999998   99999999999999  8899999


Q ss_pred             eecCCCCCCC------------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHH
Q 047629          473 ANFSLAAPAT------------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKE  522 (615)
Q Consensus       473 ~DFGla~~~~------------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~  522 (615)
                      +|||+++...                              ..++.++|||||||++|||++|+.||............  
T Consensus       196 ~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~~~~~--  273 (364)
T 3op5_A          196 VDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRD--  273 (364)
T ss_dssp             CCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHH--
T ss_pred             EECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCHHHHHH--
Confidence            9999995321                              11456889999999999999999999864433221111  


Q ss_pred             HHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          523 IREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      ....      ....+.+++++.+..   ...+..+.+++..||+.||.+||++++|++.|+.+...
T Consensus       274 ~~~~------~~~~~~~~~~~~~~~---~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~  330 (364)
T 3op5_A          274 SKIR------YRENIASLMDKCFPA---ANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKA  330 (364)
T ss_dssp             HHHH------HHHCHHHHHHHHSCT---TCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHH------hhhhHHHHHHHhccc---ccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence            1111      112233333333321   12234578999999999999999999999999877654

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=3.2e-33  Score=294.48  Aligned_cols=216  Identities=25%  Similarity=0.379  Sum_probs=170.1

Q ss_pred             cccccccc----ceEEEEEE--CCeEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEe
Q 047629          335 LSEHYSIG----KSVYRATI--DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYE  398 (615)
Q Consensus       335 ~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E  398 (615)
                      |.....+|    |.||+|..  +|+.||||++.          +.+.+|++++++++||||+++++++.+. +..++|||
T Consensus        56 y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~-~~~~lv~e  134 (348)
T 1u5q_A           56 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLRE-HTAWLVME  134 (348)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-TEEEEEEE
T ss_pred             eeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC-CeEEEEEe
Confidence            44444454    58999996  78999999884          2477899999999999999999998764 47999999


Q ss_pred             ecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCC
Q 047629          399 YAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA  478 (615)
Q Consensus       399 ~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  478 (615)
                      |++ |+|.+++.....         .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++
T Consensus       135 ~~~-g~l~~~l~~~~~---------~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~DfG~a  201 (348)
T 1u5q_A          135 YCL-GSASDLLEVHKK---------PLQEVEIAAVTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSA  201 (348)
T ss_dssp             CCS-EEHHHHHHHHTS---------CCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEEETTTEEEECCCTTC
T ss_pred             cCC-CCHHHHHHHhcC---------CCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEECCCCCEEEeeccCc
Confidence            997 788888864332         3899999999999999999999998   999999999999999999999999998


Q ss_pred             CCCC----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHH
Q 047629          479 APAT----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREER  536 (615)
Q Consensus       479 ~~~~----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  536 (615)
                      +...                      ..++.++|||||||++|||++|+.|+.......  .    +..           
T Consensus       202 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~--~----~~~-----------  264 (348)
T 1u5q_A          202 SIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS--A----LYH-----------  264 (348)
T ss_dssp             BSSSSBCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH--H----HHH-----------
T ss_pred             eecCCCCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH--H----HHH-----------
Confidence            6532                      235678999999999999999999986543211  0    110           


Q ss_pred             HhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHh
Q 047629          537 LRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSV  584 (615)
Q Consensus       537 ~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~  584 (615)
                      +.....+.+.   +......+.+++..||+.||++|||+.|+++...-
T Consensus       265 ~~~~~~~~~~---~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h~~~  309 (348)
T 1u5q_A          265 IAQNESPALQ---SGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFV  309 (348)
T ss_dssp             HHHSCCCCCC---CTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTCHHH
T ss_pred             HHhcCCCCCC---CCCCCHHHHHHHHHHcccChhhCcCHHHHhhChhh
Confidence            1111122221   12233457899999999999999999999986543

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=8.1e-33  Score=290.11  Aligned_cols=203  Identities=24%  Similarity=0.315  Sum_probs=166.1

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||+|.+++          .+.+|+.+|++++||||+++++++.+. +..++||||+++|+|.+++.
T Consensus        19 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~-~~~~lv~E~~~gg~L~~~l~   97 (337)
T 1o6l_A           19 GKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTH-DRLCFVMEYANGGELFFHLS   97 (337)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECS-SEEEEEEECCTTCBHHHHHH
T ss_pred             eEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeC-CEEEEEEeCCCCCcHHHHHH
Confidence            58999987  689999999864          356899999999999999999998754 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ...          .+++.++..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+++...        
T Consensus        98 ~~~----------~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~  164 (337)
T 1o6l_A           98 RER----------VFTEERARFYGAEIVSALEYLHSRD---VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKT  164 (337)
T ss_dssp             HHS----------CCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCC
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCcCCHHHEEECCCCCEEEeeccchhhcccCCCcccc
Confidence            643          3899999999999999999999998   9999999999999999999999999986421        


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ..++.++|||||||++|||++|+.||......   .+..   .          ....  ..    
T Consensus       165 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~---~~~~---~----------i~~~--~~----  222 (337)
T 1o6l_A          165 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE---RLFE---L----------ILME--EI----  222 (337)
T ss_dssp             CEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHH---H----------HHHC--CC----
T ss_pred             cccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHH---HHHH---H----------HHcC--CC----
Confidence                           12467899999999999999999999754311   1110   0          0111  11    


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRP-----NMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~~  581 (615)
                      .++......+.+++..||+.||++||     +++|++++
T Consensus       223 ~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h  261 (337)
T 1o6l_A          223 RFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  261 (337)
T ss_dssp             CCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             CCCCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcC
Confidence            13333445678999999999999999     89999875

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=5.9e-33  Score=287.15  Aligned_cols=219  Identities=23%  Similarity=0.367  Sum_probs=168.1

Q ss_pred             ceEEEEEE-----CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCC----cEEEEEeecCCCC
Q 047629          343 KSVYRATI-----DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQG----NRFLVYEYAENGS  404 (615)
Q Consensus       343 ~~Vy~~~~-----~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~----~~~lV~E~~~~Gs  404 (615)
                      |.||+|..     .++.||||.++         +.+.+|+.++++++||||+++++++.+.+.    ..++||||+++|+
T Consensus        48 g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~v~e~~~~~~  127 (313)
T 3brb_A           48 GSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGD  127 (313)
T ss_dssp             CCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-------CEEEEEECCTTCB
T ss_pred             eEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccccCCcccEEEEecccCCC
Confidence            58999986     24589999986         247789999999999999999999875432    3599999999999


Q ss_pred             HHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--
Q 047629          405 LDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--  482 (615)
Q Consensus       405 L~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--  482 (615)
                      |.+++........    ...+++.+++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...  
T Consensus       128 L~~~l~~~~~~~~----~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~  200 (313)
T 3brb_A          128 LHTYLLYSRLETG----PKHIPLQTLLKFMVDIALGMEYLSNRN---FLHRDLAARNCMLRDDMTVCVADFGLSKKIYSG  200 (313)
T ss_dssp             HHHHHHHTTBTTS----CCCCCHHHHHHHHHHHHHHHHHHHTTT---CCCCCCSGGGEEECTTSCEEECSCSCC------
T ss_pred             HHHHHHHhhhhcC----CccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCcceEEEcCCCcEEEeecCcceecccc
Confidence            9999954321100    124899999999999999999999998   9999999999999999999999999986431  


Q ss_pred             -----------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHh
Q 047629          483 -----------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLR  538 (615)
Q Consensus       483 -----------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  538 (615)
                                             ..++.++||||||+++|||++ |+.|+......+..   .              .+.
T Consensus       201 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~---~--------------~~~  263 (313)
T 3brb_A          201 DYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMY---D--------------YLL  263 (313)
T ss_dssp             ----------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHH---H--------------HHH
T ss_pred             cccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHH---H--------------HHH
Confidence                                   113568899999999999999 88888754432111   0              011


Q ss_pred             hhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          539 NWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       539 ~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      ....+    ..+......+.+++..||+.||.+||++.|+++.|+.+.+..
T Consensus       264 ~~~~~----~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~l  310 (313)
T 3brb_A          264 HGHRL----KQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESL  310 (313)
T ss_dssp             TTCCC----CCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             cCCCC----CCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence            11111    223334456899999999999999999999999999887654

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=2.4e-33  Score=301.59  Aligned_cols=225  Identities=21%  Similarity=0.244  Sum_probs=175.5

Q ss_pred             HHHHHHHccccccccccc----ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEc
Q 047629          325 IEVIMESTMNLSEHYSIG----KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSD  388 (615)
Q Consensus       325 ~~~l~~at~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~  388 (615)
                      ++++.....+|.....+|    |.||++..  +|+.||+|++++          .+.+|+.++..++||||+++++++.+
T Consensus        61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~  140 (410)
T 3v8s_A           61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  140 (410)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence            344555566677666676    58999998  689999999864          26689999999999999999999876


Q ss_pred             CCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC
Q 047629          389 SQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF  468 (615)
Q Consensus       389 ~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~  468 (615)
                      . ...++||||+++|+|.+++....           +++..+..++.|++.||+|||+++   |+||||||+|||++.++
T Consensus       141 ~-~~~~lV~E~~~gg~L~~~l~~~~-----------~~e~~~~~~~~qi~~aL~~LH~~g---ivHrDLKp~NILl~~~g  205 (410)
T 3v8s_A          141 D-RYLYMVMEYMPGGDLVNLMSNYD-----------VPEKWARFYTAEVVLALDAIHSMG---FIHRDVKPDNMLLDKSG  205 (410)
T ss_dssp             S-SEEEEEECCCTTEEHHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTS
T ss_pred             C-CEEEEEEeCCCCCcHHHHHHcCC-----------CCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeeECCCC
Confidence            4 47999999999999999997532           889999999999999999999998   99999999999999999


Q ss_pred             cEEEeecCCCCCCCCC----------------------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHH
Q 047629          469 KAKIANFSLAAPATND----------------------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLW  520 (615)
Q Consensus       469 ~~kl~DFGla~~~~~~----------------------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~  520 (615)
                      .+||+|||+++.....                            ++.++|||||||++|||++|+.||......+   ..
T Consensus       206 ~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~---~~  282 (410)
T 3v8s_A          206 HLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVG---TY  282 (410)
T ss_dssp             CEEECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHH---HH
T ss_pred             CEEEeccceeEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhh---HH
Confidence            9999999998543210                            3468999999999999999999997543211   11


Q ss_pred             HHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCC--CCCHHHHHHHH
Q 047629          521 KEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLS--RPNMAEVVFNL  582 (615)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~--RPsm~ev~~~L  582 (615)
                         ......    ..   ...-|.     .......+.+|+.+|+..+|.+  ||++.||+++-
T Consensus       283 ---~~i~~~----~~---~~~~p~-----~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~Hp  331 (410)
T 3v8s_A          283 ---SKIMNH----KN---SLTFPD-----DNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHL  331 (410)
T ss_dssp             ---HHHHTH----HH---HCCCCT-----TCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTSG
T ss_pred             ---HHHHhc----cc---cccCCC-----cccccHHHHHHHHHHccChhhhCCCCCHHHHhcCc
Confidence               111100    00   000010     1122345789999999999998  99999999863

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=5.6e-33  Score=293.18  Aligned_cols=212  Identities=23%  Similarity=0.354  Sum_probs=169.3

Q ss_pred             ccccccccc----ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEE
Q 047629          334 NLSEHYSIG----KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRI-NHANLVKLMGVSSDSQGNRFLV  396 (615)
Q Consensus       334 ~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV  396 (615)
                      +|.....+|    |.||++..  +|+.||||+++++          +.+|..++.++ +||||+++++++.+. +..++|
T Consensus        24 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~-~~~~lv  102 (353)
T 3txo_A           24 NFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTP-DRLFFV  102 (353)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-SEEEEE
T ss_pred             heEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeC-CEEEEE
Confidence            444444555    58999997  6899999998743          55799999988 799999999998754 479999


Q ss_pred             EeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecC
Q 047629          397 YEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFS  476 (615)
Q Consensus       397 ~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  476 (615)
                      |||+++|+|.+++....          .+++.++..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||
T Consensus       103 ~E~~~gg~L~~~l~~~~----------~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NILl~~~g~ikL~DFG  169 (353)
T 3txo_A          103 MEFVNGGDLMFHIQKSR----------RFDEARARFYAAEIISALMFLHDKG---IIYRDLKLDNVLLDHEGHCKLADFG  169 (353)
T ss_dssp             EECCCSCBHHHHHHHHS----------SCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCT
T ss_pred             EeCCCCCcHHHHHHHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---CcccCCCHHHEEECCCCCEEEcccc
Confidence            99999999999997654          2899999999999999999999998   9999999999999999999999999


Q ss_pred             CCCCCCC-----------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHH
Q 047629          477 LAAPATN-----------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKR  533 (615)
Q Consensus       477 la~~~~~-----------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~  533 (615)
                      +++....                       .++.++|||||||++|||++|+.||......+   +..   ..       
T Consensus       170 ~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~---~~~---~i-------  236 (353)
T 3txo_A          170 MCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDD---LFE---AI-------  236 (353)
T ss_dssp             TCBCSCC---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHH---HH-------
T ss_pred             ceeecccCCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHH---HHH---HH-------
Confidence            9875311                       14578999999999999999999997543211   111   00       


Q ss_pred             HHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCH------HHHHHH
Q 047629          534 EERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNM------AEVVFN  581 (615)
Q Consensus       534 ~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm------~ev~~~  581 (615)
                         ..    ..  ..++......+.+++..|++.||.+||++      .|++++
T Consensus       237 ---~~----~~--~~~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~h  281 (353)
T 3txo_A          237 ---LN----DE--VVYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRH  281 (353)
T ss_dssp             ---HH----CC--CCCCTTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHTS
T ss_pred             ---Hc----CC--CCCCCCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhhC
Confidence               01    11  12333344567899999999999999998      777663

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=9.3e-33  Score=282.57  Aligned_cols=220  Identities=17%  Similarity=0.213  Sum_probs=171.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-----HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-----EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-----~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      |.||+|..  +|+.||||.+.     ..+.+|++++.+++|+|++..++++...+...++||||+ +|+|.+++..... 
T Consensus        23 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~-  100 (296)
T 4hgt_A           23 GDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSR-  100 (296)
T ss_dssp             SEEEEEEETTTTEEEEEEEEEC---CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTS-
T ss_pred             eEEEEEEEcCCCceEEEEeecccccchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEcc-CCCHHHHHHHhcC-
Confidence            58999996  78999999764     357899999999999998888887765565789999999 8999999975432 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceee---CCCCcEEEeecCCCCCCCC---------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL---DSRFKAKIANFSLAAPATN---------  483 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl---d~~~~~kl~DFGla~~~~~---------  483 (615)
                              .+++.++..++.|++.||.|||+++   |+||||||+|||+   +.++.+||+|||+++....         
T Consensus       101 --------~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~  169 (296)
T 4hgt_A          101 --------KFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPY  169 (296)
T ss_dssp             --------CCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCC
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccCccCCC
Confidence                    3899999999999999999999998   9999999999999   7889999999999864211         


Q ss_pred             ---------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          484 ---------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       484 ---------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                           .++.++|||||||++|||++|+.||..............+...         ...... 
T Consensus       170 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~---------~~~~~~-  239 (296)
T 4hgt_A          170 RENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEK---------KMSTPI-  239 (296)
T ss_dssp             CCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHH---------HHHSCH-
T ss_pred             CcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcc---------cccchh-
Confidence                                 1345789999999999999999999865432221111111100         000000 


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      +.+...+    ...+.+++..||+.||++||++.|+++.|+.+.+..
T Consensus       240 ~~~~~~~----~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~  282 (296)
T 4hgt_A          240 EVLCKGY----PSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ  282 (296)
T ss_dssp             HHHTTTS----CHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHH
T ss_pred             hhhhccC----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Confidence            0011112    245889999999999999999999999999887654

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.4e-32  Score=283.82  Aligned_cols=222  Identities=23%  Similarity=0.366  Sum_probs=167.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.||++..  +|+.||||++.         +.+.+|++++++++|+||+++++++.+. +..++||||+++++|.+++..
T Consensus        17 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~l~~~~~~   95 (311)
T 4agu_A           17 GVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRK-RRLHLVFEYCDHTVLHELDRY   95 (311)
T ss_dssp             EEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-TEEEEEEECCSEEHHHHHHHT
T ss_pred             eEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecC-CeEEEEEEeCCCchHHHHHhh
Confidence            58999998  58999999873         3467899999999999999999998764 478999999999999998875


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------  482 (615)
                      ..          .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...         
T Consensus        96 ~~----------~~~~~~~~~i~~~l~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~  162 (311)
T 4agu_A           96 QR----------GVPEHLVKSITWQTLQAVNFCHKHN---CIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDE  162 (311)
T ss_dssp             SS----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECC---------
T ss_pred             hc----------CCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCCChhhEEEcCCCCEEEeeCCCchhccCcccccCCC
Confidence            43          2899999999999999999999998   9999999999999999999999999985432         


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH-HHHHHH--Hhhhc---
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE-EKREER--LRNWM---  541 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~--~~~~~---  541 (615)
                                     ..++.++||||||+++|||++|+.||......+....   +...+... ......  .....   
T Consensus       163 ~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  239 (311)
T 4agu_A          163 VATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYL---IRKTLGDLIPRHQQVFSTNQYFSGV  239 (311)
T ss_dssp             ---GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHH---HHHHHCSCCHHHHHHHHTCGGGTTC
T ss_pred             cCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHH---HHHHhcccccccccccccccccccC
Confidence                           2246789999999999999999999976543222111   11111000 000000  00000   


Q ss_pred             -CCcCCCCCC-----hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 -DPNLESFYP-----IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 -dp~l~~~~~-----~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       -+......+     ......+.+++..||+.||.+|||++|++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  285 (311)
T 4agu_A          240 KIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHH  285 (311)
T ss_dssp             CCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTS
T ss_pred             cCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence             011100001     1233457899999999999999999999975

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=1.4e-32  Score=291.07  Aligned_cols=207  Identities=21%  Similarity=0.318  Sum_probs=164.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||++..  +|+.||+|.++             +.+.+|+.+|++++||||+++++++.+. ...++||||+++|+|.+
T Consensus        26 g~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~-~~~~lv~e~~~gg~L~~  104 (361)
T 2yab_A           26 AIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENR-TDVVLILELVSGGELFD  104 (361)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECS-SEEEEEEECCCSCBHHH
T ss_pred             EEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeC-CEEEEEEEcCCCCcHHH
Confidence            58999998  68999999875             3478999999999999999999998754 47999999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC----cEEEeecCCCCCCC-
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF----KAKIANFSLAAPAT-  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~----~~kl~DFGla~~~~-  482 (615)
                      ++....          .+++..+..++.||+.||.|||+++   |+||||||+|||++.++    .+||+|||+++... 
T Consensus       105 ~l~~~~----------~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~  171 (361)
T 2yab_A          105 FLAQKE----------SLSEEEATSFIKQILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED  171 (361)
T ss_dssp             HHTTCS----------CCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCTTSSSCCEEECCCSSCEECCT
T ss_pred             HHHhcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEeCCCCCccCEEEEecCCceEcCC
Confidence            997643          3899999999999999999999998   99999999999998876    79999999986432 


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                           ..++.++|||||||++|||++|+.||......+   ..   ..           +.. .
T Consensus       172 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~---~~---~~-----------i~~-~  233 (361)
T 2yab_A          172 GVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE---TL---AN-----------ITA-V  233 (361)
T ss_dssp             TCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH---HH---HH-----------HHT-T
T ss_pred             CCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHH---HH---HH-----------HHh-c
Confidence                                 125668999999999999999999997543211   11   00           000 0


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .......+.......+.+++..|+..||.+|||+.|++++
T Consensus       234 ~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~h  273 (361)
T 2yab_A          234 SYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRH  273 (361)
T ss_dssp             CCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             CCCCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            0000000011223457899999999999999999999864

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=6.7e-33  Score=288.21  Aligned_cols=206  Identities=19%  Similarity=0.361  Sum_probs=161.7

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCC---------------------
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQG---------------------  391 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~---------------------  391 (615)
                      |.||+|..  +|+.||||+++        +.+.+|+++|++++||||+++++++.+.+.                     
T Consensus        20 g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (332)
T 3qd2_B           20 GVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPL   99 (332)
T ss_dssp             SEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHHHHC------------
T ss_pred             eEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhhhhhhhhccccccccc
Confidence            58999998  68999999985        457899999999999999999998864321                     


Q ss_pred             -----------------------------------cEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHH
Q 047629          392 -----------------------------------NRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALD  436 (615)
Q Consensus       392 -----------------------------------~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~  436 (615)
                                                         ..++||||+++|+|.+++......       ...++..++.++.|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~-------~~~~~~~~~~i~~q  172 (332)
T 3qd2_B          100 SSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSL-------EDREHGVCLHIFIQ  172 (332)
T ss_dssp             --------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSG-------GGSCHHHHHHHHHH
T ss_pred             cCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCc-------cchhhHHHHHHHHH
Confidence                                               279999999999999999875431       23678889999999


Q ss_pred             HHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------------------------------
Q 047629          437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------------------------------  482 (615)
Q Consensus       437 ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------------------------------  482 (615)
                      ++.||+|||+++   |+||||||+|||++.++.+||+|||+++...                                  
T Consensus       173 i~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  249 (332)
T 3qd2_B          173 IAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIH  249 (332)
T ss_dssp             HHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGGSCHHHHH
T ss_pred             HHHHHHHHHhCC---eeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCccChHHhc
Confidence            999999999998   9999999999999999999999999986432                                  


Q ss_pred             -CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHH
Q 047629          483 -NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLA  561 (615)
Q Consensus       483 -~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~  561 (615)
                       ..++.++||||||+++|||++|..|+...     ....              ........|.    ........+.+++
T Consensus       250 ~~~~~~~~Di~slG~il~el~~~~~~~~~~-----~~~~--------------~~~~~~~~~~----~~~~~~~~~~~li  306 (332)
T 3qd2_B          250 GNNYSHKVDIFSLGLILFELLYSFSTQMER-----VRII--------------TDVRNLKFPL----LFTQKYPQEHMMV  306 (332)
T ss_dssp             CCCCCTHHHHHHHHHHHHHHHSCCCCHHHH-----HHHH--------------HHHHTTCCCH----HHHHHCHHHHHHH
T ss_pred             CCCCcchhhHHHHHHHHHHHHHcCCChhHH-----HHHH--------------HHhhccCCCc----ccccCChhHHHHH
Confidence             12467899999999999999987663210     0000              0011110010    0122334568999


Q ss_pred             HHhhhcCCCCCCCHHHHHHH
Q 047629          562 RACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       562 ~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+||+.||++|||+.|++++
T Consensus       307 ~~~l~~~p~~Rps~~~~l~~  326 (332)
T 3qd2_B          307 QDMLSPSPTERPEATDIIEN  326 (332)
T ss_dssp             HHHHCSSGGGSCCHHHHHHS
T ss_pred             HHHccCCCCcCCCHHHHhhc
Confidence            99999999999999999874

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=7e-33  Score=293.34  Aligned_cols=209  Identities=20%  Similarity=0.246  Sum_probs=161.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      |.||++..  +|+.||||+++      +.+.+|+.++++++||||+++++++.+. +..++||||+++|+|.+++.... 
T Consensus        34 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~-  111 (361)
T 3uc3_A           34 GVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILTP-THLAIIMEYASGGELYERICNAG-  111 (361)
T ss_dssp             SSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEEEEECCCSCBHHHHHHHHS-
T ss_pred             EEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhCCCCCCCcEEEEEeeC-CEEEEEEEeCCCCCHHHHHHhcC-
Confidence            58999998  68999999985      4578999999999999999999998764 47999999999999999997643 


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCc--EEEeecCCCCCCCC---------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK--AKIANFSLAAPATN---------  483 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~--~kl~DFGla~~~~~---------  483 (615)
                               .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.  +||+|||+++....         
T Consensus       112 ---------~~~~~~~~~i~~ql~~~L~~LH~~~---ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~g  179 (361)
T 3uc3_A          112 ---------RFSEDEARFFFQQLLSGVSYCHSMQ---ICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVG  179 (361)
T ss_dssp             ---------SCCHHHHHHHHHHHHHHHHHHHHTT---CCSCCCCGGGEEECSSSSCCEEECCCCCC--------------
T ss_pred             ---------CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEcCCCCceEEEeecCccccccccCCCCCCcC
Confidence                     2899999999999999999999998   999999999999987765  99999999863211         


Q ss_pred             -------------CCC-CcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          484 -------------DVM-PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       484 -------------~~~-~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                   .+. .++|||||||++|||++|+.||..........  ..              +..+.........
T Consensus       180 t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~--~~--------------~~~~~~~~~~~~~  243 (361)
T 3uc3_A          180 TPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYR--KT--------------IQRILSVKYSIPD  243 (361)
T ss_dssp             -CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHH--HH--------------HHHHHTTCCCCCT
T ss_pred             CCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHH--HH--------------HHHHhcCCCCCCC
Confidence                         122 24899999999999999999997654322211  00              1111111111111


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .......+.+|+.+||+.||++|||+.|++++
T Consensus       244 ~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h  275 (361)
T 3uc3_A          244 DIRISPECCHLISRIFVADPATRISIPEIKTH  275 (361)
T ss_dssp             TSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             cCCCCHHHHHHHHHHccCChhHCcCHHHHHhC
Confidence            11223457899999999999999999999986

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=1.2e-32  Score=281.94  Aligned_cols=220  Identities=17%  Similarity=0.203  Sum_probs=170.4

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-----HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-----EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-----~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      |.||+|..  +|+.||||++.     ..+.+|+.++.+++|++++..++++...+...++||||+ +|+|.+++..... 
T Consensus        23 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~-  100 (296)
T 3uzp_A           23 GDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSR-  100 (296)
T ss_dssp             EEEEEEEETTTTEEEEEEEEESCSSCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTT-
T ss_pred             eEEEEEEEcCCCcEEEEEEecCCcchhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEec-CCCHHHHHHhhcc-
Confidence            58999996  79999999875     468899999999999998877777765555789999999 8999999975432 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceee---CCCCcEEEeecCCCCCCCC---------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL---DSRFKAKIANFSLAAPATN---------  483 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl---d~~~~~kl~DFGla~~~~~---------  483 (615)
                              .+++.+++.++.|++.||+|||+++   |+||||||+|||+   +.++.+||+|||+++....         
T Consensus       101 --------~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  169 (296)
T 3uzp_A          101 --------KFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPY  169 (296)
T ss_dssp             --------CCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCC
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccccccccccc
Confidence                    3899999999999999999999998   9999999999999   4889999999999854211         


Q ss_pred             ---------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          484 ---------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       484 ---------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                           .++.++|||||||++|||++|+.||..............+...         ..... .
T Consensus       170 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~---------~~~~~-~  239 (296)
T 3uzp_A          170 RENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEK---------KMSTP-I  239 (296)
T ss_dssp             CCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHH---------HHHSC-H
T ss_pred             ccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhccc---------ccCCc-h
Confidence                                 1345889999999999999999999864422211111111110         00000 0


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      +.+...+    ...+.+++..||+.||.+||++.||++.|+.+....
T Consensus       240 ~~~~~~~----~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~  282 (296)
T 3uzp_A          240 EVLCKGY----PSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ  282 (296)
T ss_dssp             HHHTTTS----CHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHhhC----CHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhc
Confidence            0011122    245789999999999999999999999999886553

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=1.3e-32  Score=279.73  Aligned_cols=212  Identities=26%  Similarity=0.469  Sum_probs=168.7

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---HHHHHHHHHHHhcCCCCcccEEEEEEc---------------CCCcEEEEEeecCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK---EDVTEELRILQRINHANLVKLMGVSSD---------------SQGNRFLVYEYAEN  402 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---~~~~~Ei~~l~~l~H~niv~l~g~~~~---------------~~~~~~lV~E~~~~  402 (615)
                      |.||++..  +|+.||+|+++   ..+.+|++++++++||||+++++++..               .....++||||+++
T Consensus        25 g~V~~~~~~~~~~~vavK~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~  104 (284)
T 2a19_B           25 GQVFKAKHRIDGKTYVIKRVKYNNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDK  104 (284)
T ss_dssp             CCEEEEEETTTCCEEEEEEEECCSGGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------CCEEEEEEEEECCCCS
T ss_pred             eEEEEEEEcCCCeEEEEEEeccccHHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccccccccCcceEEEEEeccCC
Confidence            58999998  58999999986   468899999999999999999998753               12247999999999


Q ss_pred             CCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC
Q 047629          403 GSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT  482 (615)
Q Consensus       403 GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~  482 (615)
                      |+|.+++......        .+++..++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...
T Consensus       105 ~~L~~~l~~~~~~--------~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  173 (284)
T 2a19_B          105 GTLEQWIEKRRGE--------KLDKVLALELFEQITKGVDYIHSKK---LINRDLKPSNIFLVDTKQVKIGDFGLVTSLK  173 (284)
T ss_dssp             CBHHHHHHHGGGS--------CCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCEESS
T ss_pred             CCHHHHHhhccCC--------CCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCCHHHEEEcCCCCEEECcchhheecc
Confidence            9999999754321        3899999999999999999999998   9999999999999999999999999985432


Q ss_pred             C----------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhh
Q 047629          483 N----------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNW  540 (615)
Q Consensus       483 ~----------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  540 (615)
                      .                      .++.++||||||+++|||++|+.|+....     ..                 ....
T Consensus       174 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~-----~~-----------------~~~~  231 (284)
T 2a19_B          174 NDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETS-----KF-----------------FTDL  231 (284)
T ss_dssp             CCSCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHH-----HH-----------------HHHH
T ss_pred             ccccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHH-----HH-----------------HHHh
Confidence            1                      24678999999999999999998863110     00                 0111


Q ss_pred             cCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchhh
Q 047629          541 MDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTET  591 (615)
Q Consensus       541 ~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~~  591 (615)
                      .+..+...++    ..+.+++..||+.||.+||++.|+++.|..+..+.+.
T Consensus       232 ~~~~~~~~~~----~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~~  278 (284)
T 2a19_B          232 RDGIISDIFD----KKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPEK  278 (284)
T ss_dssp             HTTCCCTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC----
T ss_pred             hcccccccCC----HHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCCc
Confidence            1122222233    3478999999999999999999999999988776543

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=290.14  Aligned_cols=208  Identities=23%  Similarity=0.330  Sum_probs=159.6

Q ss_pred             ceEEEEEE--CCeEEEEEEccH-----HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE-----DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~-----~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      |.||+|..  +++.||||+++.     .+.+|++++++++|+||+++++++.+. +..++||||+++|+|.+++....  
T Consensus        67 g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~--  143 (349)
T 2w4o_A           67 SIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFETP-TEISLVLELVTGGELFDRIVEKG--  143 (349)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEC----------CHHHHHCCCTTBCCEEEEEECS-SEEEEEECCCCSCBHHHHHTTCS--
T ss_pred             EEEEEEEECCCCcEEEEEEeccchhHHHHHHHHHHHHhCCCCCCcceeeeEecC-CeEEEEEEeCCCCCHHHHHHhcC--
Confidence            58999998  578999999863     467899999999999999999998764 47999999999999999997643  


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC---CCcEEEeecCCCCCCC----------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS---RFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~---~~~~kl~DFGla~~~~----------  482 (615)
                              .+++.++..++.|++.||.|||+++   |+||||||+|||++.   ++.+||+|||+++...          
T Consensus       144 --------~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~g  212 (349)
T 2w4o_A          144 --------YYSERDAADAVKQILEAVAYLHENG---IVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCG  212 (349)
T ss_dssp             --------SCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEESSSSTTCCEEECCCC----------------
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCcccEEEecCCCCCCEEEccCccccccCcccccccccC
Confidence                    3899999999999999999999998   999999999999975   8899999999986432          


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  ..++.++|||||||++|||++|+.||........  ...   .           +... .........
T Consensus       213 t~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~--~~~---~-----------i~~~-~~~~~~~~~  275 (349)
T 2w4o_A          213 TPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQF--MFR---R-----------ILNC-EYYFISPWW  275 (349)
T ss_dssp             CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHH--HHH---H-----------HHTT-CCCCCTTTT
T ss_pred             CCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHH--HHH---H-----------HHhC-CCccCCchh
Confidence                        1256789999999999999999999975442111  110   0           1000 001111112


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+....+.+|+.+||+.||++|||+.|+++.
T Consensus       276 ~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  306 (349)
T 2w4o_A          276 DEVSLNAKDLVRKLIVLDPKKRLTTFQALQH  306 (349)
T ss_dssp             TTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             hhCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            2344568899999999999999999999885

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=4.6e-33  Score=301.79  Aligned_cols=229  Identities=18%  Similarity=0.225  Sum_probs=178.5

Q ss_pred             eeHHHHHHHccccccccccc----ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhcCCCCcccEEEEE
Q 047629          323 YEIEVIMESTMNLSEHYSIG----KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRINHANLVKLMGVS  386 (615)
Q Consensus       323 ~~~~~l~~at~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l~H~niv~l~g~~  386 (615)
                      +.++++...+++|.....+|    |.||++..  +|+.||||++++.          +.+|+.++.+++|+||+++++++
T Consensus        64 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~  143 (437)
T 4aw2_A           64 SKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAF  143 (437)
T ss_dssp             HHHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred             chhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence            34556666677787777777    58999998  5799999998641          67899999999999999999998


Q ss_pred             EcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC
Q 047629          387 SDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS  466 (615)
Q Consensus       387 ~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~  466 (615)
                      .+. +..++||||+++|+|.+++.....         .+++..+..++.|++.||+|||+++   |+||||||+|||++.
T Consensus       144 ~~~-~~~~lV~Ey~~gg~L~~~l~~~~~---------~l~e~~~~~~~~qi~~aL~~LH~~g---iiHrDLKp~NILl~~  210 (437)
T 4aw2_A          144 QDD-NNLYLVMDYYVGGDLLTLLSKFED---------RLPEEMARFYLAEMVIAIDSVHQLH---YVHRDIKPDNILMDM  210 (437)
T ss_dssp             ECS-SEEEEEECCCTTCBHHHHHHTTTT---------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECT
T ss_pred             eeC-CEEEEEEecCCCCcHHHHHHHccC---------CCCHHHHHHHHHHHHHHHHHHHhCC---eEecccCHHHeeEcC
Confidence            764 479999999999999999976432         3899999999999999999999998   999999999999999


Q ss_pred             CCcEEEeecCCCCCCC-----------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhH
Q 047629          467 RFKAKIANFSLAAPAT-----------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTA  517 (615)
Q Consensus       467 ~~~~kl~DFGla~~~~-----------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~  517 (615)
                      ++.+||+|||+++...                             ..++.++|||||||++|||++|+.||......+  
T Consensus       211 ~g~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~--  288 (437)
T 4aw2_A          211 NGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVE--  288 (437)
T ss_dssp             TSCEEECCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHH--
T ss_pred             CCCEEEcchhhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhH--
Confidence            9999999999985321                             124568999999999999999999997543211  


Q ss_pred             HHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCC--CCCHHHHHHH
Q 047629          518 VLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLS--RPNMAEVVFN  581 (615)
Q Consensus       518 ~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~--RPsm~ev~~~  581 (615)
                       ..   ...+..    .   ....-|....    +....+.+|+++|+..+|++  ||++.|++++
T Consensus       289 -~~---~~i~~~----~---~~~~~p~~~~----~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~H  339 (437)
T 4aw2_A          289 -TY---GKIMNH----K---ERFQFPTQVT----DVSENAKDLIRRLICSREHRLGQNGIEDFKKH  339 (437)
T ss_dssp             -HH---HHHHTH----H---HHCCCCSSCC----CSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTS
T ss_pred             -HH---Hhhhhc----c---ccccCCcccc----cCCHHHHHHHHHHhcccccccCCCCHHHHhCC
Confidence             11   111100    0   0111111111    23345789999999888888  9999999885

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=5e-33  Score=289.80  Aligned_cols=229  Identities=25%  Similarity=0.384  Sum_probs=172.1

Q ss_pred             ceEEEEEE------CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCC-CcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI------DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQ-GNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~------~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~-~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||++.+      +|+.||||+++       +.+.+|++++++++|+||+++++++...+ ...++||||+++|+|.++
T Consensus        55 g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~  134 (326)
T 2w1i_A           55 GSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDY  134 (326)
T ss_dssp             EEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCEEEECCCTTCBHHHH
T ss_pred             eEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceEEEEECCCCCCHHHH
Confidence            58999985      58999999985       35789999999999999999999986533 257999999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC----
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND----  484 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~----  484 (615)
                      +.....         .+++.+++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++.....    
T Consensus       135 l~~~~~---------~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~~~~  202 (326)
T 2w1i_A          135 LQKHKE---------RIDHIKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYY  202 (326)
T ss_dssp             HHHSTT---------SSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEEETTEEEECCCTTCEECCSSCSEE
T ss_pred             HHhccc---------CCCHHHHHHHHHHHHHHHHHHHhCC---EeccCCCcceEEEcCCCcEEEecCcchhhcccccccc
Confidence            986543         3899999999999999999999998   999999999999999999999999998653211    


Q ss_pred             ----------------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          485 ----------------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       485 ----------------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                            ++.++||||||+++|||++|+.|+.....    ......... .........+.+.+.
T Consensus       203 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~  277 (326)
T 2w1i_A          203 KVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA----EFMRMIGND-KQGQMIVFHLIELLK  277 (326)
T ss_dssp             ECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHH----HHHHHHCTT-CCTHHHHHHHHHHHH
T ss_pred             ccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHH----HHHHhhccc-cchhhhHHHHHHHhh
Confidence                                  24579999999999999999988753210    000000000 000000011111111


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      .......+......+.+++..||+.||++|||+.|+++.|+.+.+.
T Consensus       278 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~  323 (326)
T 2w1i_A          278 NNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQ  323 (326)
T ss_dssp             TTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence            1111122344556789999999999999999999999999988654

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=1.4e-32  Score=286.08  Aligned_cols=203  Identities=21%  Similarity=0.324  Sum_probs=165.6

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||+|.+++.          +.+|+.++++++||||+++++++.+. ...++||||+++|+|.+++.
T Consensus        20 g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~-~~~~lv~e~~~gg~L~~~l~   98 (318)
T 1fot_A           20 GRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDA-QQIFMIMDYIEGGELFSLLR   98 (318)
T ss_dssp             CEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECS-SEEEEEECCCCSCBHHHHHH
T ss_pred             EEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeC-CEEEEEEeCCCCCCHHHHHH
Confidence            58999987  6899999998642          55799999999999999999998754 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ...          .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...        
T Consensus        99 ~~~----------~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~~~~~~g  165 (318)
T 1fot_A           99 KSQ----------RFPNPVAKFYAAEVCLALEYLHSKD---IIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCG  165 (318)
T ss_dssp             HTS----------SCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECTTSCEEECCCSSCEECSSCBCCCCS
T ss_pred             HcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChheEEEcCCCCEEEeecCcceecCCccccccC
Confidence            654          2899999999999999999999998   9999999999999999999999999986432        


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  ..++.++|||||||++|||++|+.||......   ...   ...          +..  ..    .++
T Consensus       166 t~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~---~~~---~~i----------~~~--~~----~~p  223 (318)
T 1fot_A          166 TPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTM---KTY---EKI----------LNA--EL----RFP  223 (318)
T ss_dssp             CTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH---HHH---HHH----------HHC--CC----CCC
T ss_pred             CccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHH---HHH---HHH----------HhC--CC----CCC
Confidence                        12467899999999999999999999754311   111   110          111  11    123


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRP-----NMAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~~  581 (615)
                      ......+.+++.+|++.||.+||     ++.|++++
T Consensus       224 ~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~h  259 (318)
T 1fot_A          224 PFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNH  259 (318)
T ss_dssp             TTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTS
T ss_pred             CCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhcC
Confidence            33345678999999999999999     88888864

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=1.7e-32  Score=292.42  Aligned_cols=205  Identities=22%  Similarity=0.309  Sum_probs=166.2

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||+|.++.          .+.+|+++|++++||||+++++++.+. +..++||||+++|+|.+++.
T Consensus        29 G~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~-~~~~lv~e~~~gg~L~~~l~  107 (384)
T 4fr4_A           29 GKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDE-EDMFMVVDLLLGGDLRYHLQ  107 (384)
T ss_dssp             CCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECS-SEEEEEECCCTTEEHHHHHH
T ss_pred             eEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeC-CEEEEEEecCCCCcHHHHHH
Confidence            58999987  689999999863          356899999999999999999998764 47999999999999999998


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ...          .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...        
T Consensus       108 ~~~----------~l~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~  174 (384)
T 4fr4_A          108 QNV----------HFKEETVKLFICELVMALDYLQNQR---IIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITTM  174 (384)
T ss_dssp             TTC----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECCTTCCBCCC
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCcHHHeEECCCCCEEEeccceeeeccCCCceecc
Confidence            643          3899999999999999999999998   9999999999999999999999999986431        


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                       ..++.++|||||||++|||++|+.||..............              +.. ..   
T Consensus       175 ~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~--------------~~~-~~---  236 (384)
T 4fr4_A          175 AGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHT--------------FET-TV---  236 (384)
T ss_dssp             CSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHH--------------HHH-CC---
T ss_pred             CCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHH--------------Hhh-cc---
Confidence                             1246689999999999999999999975443322211110              000 01   


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPN-MAEVVF  580 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPs-m~ev~~  580 (615)
                       ..++......+.+|+..||+.||.+||+ +.++..
T Consensus       237 -~~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~  271 (384)
T 4fr4_A          237 -VTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN  271 (384)
T ss_dssp             -CCCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred             -cCCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence             1234444556899999999999999999 777654

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=1.6e-32  Score=290.65  Aligned_cols=207  Identities=22%  Similarity=0.314  Sum_probs=164.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.||++..  +|+.||+|.++         +.+.+|+.++++++||||+++++++.+. +..++||||+++|+|.+++..
T Consensus        43 g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~-~~~~lv~e~~~gg~L~~~l~~  121 (362)
T 2bdw_A           43 SVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEE-SFHYLVFDLVTGGELFEDIVA  121 (362)
T ss_dssp             EEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEEEECCCCSCBHHHHHTT
T ss_pred             eEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeC-CEEEEEEecCCCCCHHHHHHH
Confidence            58999997  68999999985         2467899999999999999999998754 478999999999999999976


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC---CcEEEeecCCCCCCCC-----
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR---FKAKIANFSLAAPATN-----  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~---~~~kl~DFGla~~~~~-----  483 (615)
                      ..          .+++..+..++.|++.||.|||+++   |+||||||+|||++.+   +.+||+|||+++....     
T Consensus       122 ~~----------~~~~~~~~~~~~qi~~al~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~~~  188 (362)
T 2bdw_A          122 RE----------FYSEADASHCIQQILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWH  188 (362)
T ss_dssp             CS----------CCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCSCC
T ss_pred             cC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCchHHEEEecCCCCCCEEEeecCcceEecCCcccc
Confidence            43          3899999999999999999999998   9999999999999865   4599999999865321     


Q ss_pred             -----------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          484 -----------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       484 -----------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                       .++.++|||||||++|||++|+.||.....   ..++..+             .....+  ..
T Consensus       189 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~---~~~~~~i-------------~~~~~~--~~  250 (362)
T 2bdw_A          189 GFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ---HRLYAQI-------------KAGAYD--YP  250 (362)
T ss_dssp             CSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHH-------------HHTCCC--CC
T ss_pred             cCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH---HHHHHHH-------------HhCCCC--CC
Confidence                             256789999999999999999999975432   1111110             001111  00


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..........+.+|+.+||+.||++||++.|++++
T Consensus       251 ~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  285 (362)
T 2bdw_A          251 SPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV  285 (362)
T ss_dssp             TTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             cccccCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            01111234567899999999999999999999875

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=1.6e-32  Score=293.25  Aligned_cols=224  Identities=16%  Similarity=0.242  Sum_probs=165.1

Q ss_pred             eEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          344 SVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       344 ~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      .||++..  +|+.||||+++         ..+.+|+.++++++|||||++++++.+. +..++||||+++|+|.+++...
T Consensus        42 ~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~  120 (389)
T 3gni_B           42 TVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIAD-NELWVVTSFMAYGSAKDLICTH  120 (389)
T ss_dssp             EEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-TEEEEEEECCTTCBHHHHHHHT
T ss_pred             EEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEEC-CEEEEEEEccCCCCHHHHHhhh
Confidence            6999998  68999999985         2366799999999999999999998764 4799999999999999999765


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC-----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA-----------  481 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~-----------  481 (615)
                      ...        .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||++...           
T Consensus       121 ~~~--------~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~  189 (389)
T 3gni_B          121 FMD--------GMNELAIAYILQGVLKALDYIHHMG---YVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVH  189 (389)
T ss_dssp             CTT--------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCGGGCEECEETTEECSCBC
T ss_pred             ccc--------CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEcccccceeeccccccccccc
Confidence            321        3899999999999999999999998   999999999999999999999999986321           


Q ss_pred             -------------------C--CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHH----hHHHHHH--
Q 047629          482 -------------------T--NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVL----KVEEKRE--  534 (615)
Q Consensus       482 -------------------~--~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~----~~~~~~~--  534 (615)
                                         .  ..++.++|||||||++|||++|+.||..........  ..+....    .......  
T Consensus       190 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  267 (389)
T 3gni_B          190 DFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLL--EKLNGTVPCLLDTSTIPAEE  267 (389)
T ss_dssp             CCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHH--HC------------------
T ss_pred             cccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHH--HHhcCCCCcccccccccccc
Confidence                               0  235678999999999999999999997654332211  0000000    0000000  


Q ss_pred             -----------HHHhhhcC---Cc------CCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          535 -----------ERLRNWMD---PN------LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       535 -----------~~~~~~~d---p~------l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                                 ..+.+.+.   +.      ....++......+.+|+.+||+.||++|||+.|++++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~h  334 (389)
T 3gni_B          268 LTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNH  334 (389)
T ss_dssp             --------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             ccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcC
Confidence                       00000000   00      0011223344568999999999999999999999875

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=1.7e-32  Score=289.12  Aligned_cols=203  Identities=20%  Similarity=0.282  Sum_probs=166.1

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||||.++.          .+.+|+++|++++||||+++++++.+. ...++||||+++|+|.+++.
T Consensus        55 g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~~lv~e~~~gg~L~~~l~  133 (350)
T 1rdq_E           55 GRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDN-SNLYMVMEYVAGGEMFSHLR  133 (350)
T ss_dssp             CEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECS-SEEEEEEECCTTCBHHHHHH
T ss_pred             cEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcC-CEEEEEEcCCCCCcHHHHHH
Confidence            58999998  689999999853          356799999999999999999998754 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ...          .+++.++..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...        
T Consensus       134 ~~~----------~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~~~~~g  200 (350)
T 1rdq_E          134 RIG----------RFSEPHARFYAAQIVLTFEYLHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCG  200 (350)
T ss_dssp             HHC----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECSSCBCCCEE
T ss_pred             HcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---cccccCccceEEECCCCCEEEcccccceeccCCcccccC
Confidence            643          2899999999999999999999998   9999999999999999999999999986432        


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  ..++.++|||||||++|||++|+.||......   ...   ...          ...  ..    .++
T Consensus       201 t~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~---~~~---~~i----------~~~--~~----~~p  258 (350)
T 1rdq_E          201 TPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPI---QIY---EKI----------VSG--KV----RFP  258 (350)
T ss_dssp             CGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHH---HHH----------HHC--CC----CCC
T ss_pred             CccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHH---HHH---HHH----------HcC--CC----CCC
Confidence                        22567899999999999999999999754311   111   000          010  11    223


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCC-----HHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPN-----MAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPs-----m~ev~~~  581 (615)
                      ......+.+++.+||+.||.+||+     ++||+++
T Consensus       259 ~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h  294 (350)
T 1rdq_E          259 SHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNH  294 (350)
T ss_dssp             TTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTS
T ss_pred             CCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHhC
Confidence            334456889999999999999998     8888764

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=2.9e-32  Score=279.26  Aligned_cols=223  Identities=18%  Similarity=0.267  Sum_probs=163.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.||++..  +|+.||||+++         ..+.+|+.++++++|+||+++++++.+. +..++||||+++ +|.+++..
T Consensus        16 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~-~l~~~~~~   93 (292)
T 3o0g_A           16 GTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSD-KKLTLVFEFCDQ-DLKKYFDS   93 (292)
T ss_dssp             SEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEET-TEEEEEEECCSE-EHHHHHHH
T ss_pred             eEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeC-CEEEEEEecCCC-CHHHHHHh
Confidence            58999998  68999999985         4577899999999999999999998764 479999999975 66666654


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------  482 (615)
                      ...         .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...         
T Consensus        94 ~~~---------~l~~~~~~~~~~ql~~~l~~lH~~~---ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~  161 (292)
T 3o0g_A           94 CNG---------DLDPEIVKSFLFQLLKGLGFCHSRN---VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAE  161 (292)
T ss_dssp             TTT---------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECCSCCSCCCSC
T ss_pred             CCC---------CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEeecccceecCCccccccCC
Confidence            332         3899999999999999999999998   9999999999999999999999999985421         


Q ss_pred             --------------C-CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHH-HHHHHhhhcCCc--
Q 047629          483 --------------N-DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEK-REERLRNWMDPN--  544 (615)
Q Consensus       483 --------------~-~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~dp~--  544 (615)
                                    . .++.++|||||||++|||++|+.|+........  ....+......... .-....+..+..  
T Consensus       162 ~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  239 (292)
T 3o0g_A          162 VVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDD--QLKRIFRLLGTPTEEQWPSMTKLPDYKPY  239 (292)
T ss_dssp             CSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHH--HHHHHHHHHCCCCTTTCTTGGGSTTCCCC
T ss_pred             ccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHH--HHHHHHHHhCCCChhhhhhhccccccccc
Confidence                          1 146789999999999999999988654432111  11111111100000 000000000000  


Q ss_pred             -------CCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          545 -------LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       545 -------l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                             ............+.+|+.+|++.||++|||++|++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  283 (292)
T 3o0g_A          240 PMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQH  283 (292)
T ss_dssp             CCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             ccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcC
Confidence                   0011112344567899999999999999999999864

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=288.17  Aligned_cols=205  Identities=21%  Similarity=0.369  Sum_probs=167.0

Q ss_pred             ceEEEEEE-CCeEEEEEEcc---------HHHHHHHHHHHhcCC--CCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI-DGKVLAVKKIK---------EDVTEELRILQRINH--ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~---------~~~~~Ei~~l~~l~H--~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++.. +++.||||+++         ..+.+|+++|.+++|  +||+++++++.+. ...++||| +.+|+|.+++.
T Consensus        23 g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~-~~~~lv~e-~~~~~L~~~l~  100 (343)
T 3dbq_A           23 SKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITD-QYIYMVME-CGNIDLNSWLK  100 (343)
T ss_dssp             EEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-SEEEEEEC-CCSEEHHHHHH
T ss_pred             eEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeC-CEEEEEEe-CCCCCHHHHHH
Confidence            58999987 78999999885         347789999999976  9999999998754 47999999 56889999998


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ...          .+++.++..++.|++.||.|||+++   |+||||||+|||++ ++.+||+|||+++...        
T Consensus       101 ~~~----------~~~~~~~~~i~~qi~~al~~lH~~~---iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~  166 (343)
T 3dbq_A          101 KKK----------SIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVK  166 (343)
T ss_dssp             HSC----------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEE-TTEEEECCCSSSCCC---------
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCcceEEEE-CCcEEEeecccccccCcccccccC
Confidence            654          3899999999999999999999998   99999999999997 5789999999986431        


Q ss_pred             ----------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHH
Q 047629          483 ----------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKRE  534 (615)
Q Consensus       483 ----------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~  534 (615)
                                                  ..++.++|||||||++|||++|+.||....+.                   .
T Consensus       167 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-------------------~  227 (343)
T 3dbq_A          167 DSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ-------------------I  227 (343)
T ss_dssp             ---CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSH-------------------H
T ss_pred             CCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhH-------------------H
Confidence                                        12345789999999999999999999754321                   0


Q ss_pred             HHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          535 ERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       535 ~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      ..+...+++.....++......+.+|+..||+.||.+|||+.|++++.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~hp  275 (343)
T 3dbq_A          228 SKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHP  275 (343)
T ss_dssp             HHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred             HHHHHHhcCCcccCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhCc
Confidence            112333444444455555556789999999999999999999999864

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=4.2e-33  Score=290.79  Aligned_cols=222  Identities=24%  Similarity=0.367  Sum_probs=170.7

Q ss_pred             ceEEEEEEC--C-----eEEEEEEcc--------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATID--G-----KVLAVKKIK--------EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~~--g-----~~vAvK~~~--------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      |.||+|...  |     +.||+|.++        +.+.+|+.+++++ +||||+++++++.+. +..++||||+++|+|.
T Consensus        60 g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~-~~~~lv~e~~~~g~L~  138 (333)
T 2i1m_A           60 GKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHG-GPVLVITEYCCYGDLL  138 (333)
T ss_dssp             EEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS-SSCEEEEECCTTEEHH
T ss_pred             cceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecC-CceEEEEecCCCCcHH
Confidence            589999972  2     479999985        2477899999999 899999999998754 4799999999999999


Q ss_pred             HhhccCCCCCCC----CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC
Q 047629          407 KWLHPKSKSSSS----SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT  482 (615)
Q Consensus       407 ~~L~~~~~~~~~----~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~  482 (615)
                      +++.........    ......+++..++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...
T Consensus       139 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~  215 (333)
T 2i1m_A          139 NFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKN---CIHRDVAARNVLLTNGHVAKIGDFGLARDIM  215 (333)
T ss_dssp             HHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGCEEEGGGEEEBCCCGGGCCGG
T ss_pred             HHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCC---cccCCcccceEEECCCCeEEECccccccccc
Confidence            999753210000    000013899999999999999999999998   9999999999999999999999999986431


Q ss_pred             -------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHH
Q 047629          483 -------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREER  536 (615)
Q Consensus       483 -------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  536 (615)
                                               ..++.++||||||+++|||++ |+.|+.........  .    .          .
T Consensus       216 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~--~----~----------~  279 (333)
T 2i1m_A          216 NDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKF--Y----K----------L  279 (333)
T ss_dssp             GCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHH--H----H----------H
T ss_pred             cccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHHH--H----H----------H
Confidence                                     124568999999999999999 88998765432211  1    0          0


Q ss_pred             HhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          537 LRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       537 ~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      +.....+.    .+......+.+++..||+.||.+|||+.|+++.|+.+.+.
T Consensus       280 ~~~~~~~~----~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~  327 (333)
T 2i1m_A          280 VKDGYQMA----QPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQE  327 (333)
T ss_dssp             HHHTCCCC----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HhcCCCCC----CCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHHh
Confidence            11111111    1223345688999999999999999999999999877654

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=9.3e-33  Score=293.74  Aligned_cols=208  Identities=25%  Similarity=0.306  Sum_probs=165.1

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||+|..  +|+.||+|+++       +.+.+|+++|++++||||+++++++.+. +..++||||+++|+|.+++....
T Consensus       103 g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~-~~~~lv~E~~~~~~L~~~l~~~~  181 (373)
T 2x4f_A          103 GQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESK-NDIVLVMEYVDGGELFDRIIDES  181 (373)
T ss_dssp             -CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECS-SEEEEEEECCTTCEEHHHHHHTG
T ss_pred             EEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEEC-CEEEEEEeCCCCCcHHHHHHhcC
Confidence            58999987  68999999885       3578999999999999999999998764 47999999999999999997543


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceee--CCCCcEEEeecCCCCCCCC--------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL--DSRFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl--d~~~~~kl~DFGla~~~~~--------  483 (615)
                      .         .+++..+..++.|++.||+|||+++   |+||||||+|||+  +.++.+||+|||+++....        
T Consensus       182 ~---------~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~~~~~  249 (373)
T 2x4f_A          182 Y---------NLTELDTILFMKQICEGIRHMHQMY---ILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLKVNF  249 (373)
T ss_dssp             G---------GCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBCCCCC
T ss_pred             C---------CCCHHHHHHHHHHHHHHHHHHHHCC---cccccCCHHHEEEecCCCCcEEEEeCCCceecCCcccccccc
Confidence            2         3899999999999999999999998   9999999999999  6778999999999865321        


Q ss_pred             --------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          484 --------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       484 --------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                    .++.++|||||||++|||++|+.||......+   .   +...          +....+  +....
T Consensus       250 gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~---~---~~~i----------~~~~~~--~~~~~  311 (373)
T 2x4f_A          250 GTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAE---T---LNNI----------LACRWD--LEDEE  311 (373)
T ss_dssp             SSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHH---H---HHHH----------HHTCCC--SCSGG
T ss_pred             CCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHH---H---HHHH----------HhccCC--CChhh
Confidence                          13458999999999999999999997544211   0   1111          111111  11111


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .......+.+|+..|++.||.+||++.|+++.
T Consensus       312 ~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~h  343 (373)
T 2x4f_A          312 FQDISEEAKEFISKLLIKEKSWRISASEALKH  343 (373)
T ss_dssp             GTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             hccCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            11233467899999999999999999999984

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=1.8e-32  Score=284.66  Aligned_cols=227  Identities=20%  Similarity=0.347  Sum_probs=165.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||+|..  +|+.||||+++        ..+.+|++++++++||||+++++++.+ ++..++||||++ |+|.+++...
T Consensus        19 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~~lv~e~~~-~~L~~~l~~~   96 (317)
T 2pmi_A           19 ATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHT-ENKLTLVFEFMD-NDLKKYMDSR   96 (317)
T ss_dssp             CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECC-TTEEEEEEECCC-CBHHHHHHHH
T ss_pred             EEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEE-CCeEEEEEEecC-CCHHHHHHhc
Confidence            58999987  68999999885        357899999999999999999999865 447999999998 6999998654


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                      .....    ...+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...          
T Consensus        97 ~~~~~----~~~~~~~~~~~~~~qi~~aL~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  169 (317)
T 2pmi_A           97 TVGNT----PRGLELNLVKYFQWQLLQGLAFCHENK---ILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEV  169 (317)
T ss_dssp             HSSSC----CCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCSSCEETTSCCCCCCCCC
T ss_pred             ccccc----ccCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCChHHeEEcCCCCEEECcCccceecCCCcccCCCCc
Confidence            32110    113899999999999999999999998   9999999999999999999999999985421          


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHH-HHHHHhh--hcCCcC
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEK-REERLRN--WMDPNL  545 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~--~~dp~l  545 (615)
                                    ..++.++|||||||++|||++|+.||......+.   ...+......... .-.....  ..++.+
T Consensus       170 ~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  246 (317)
T 2pmi_A          170 VTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQ---LKLIFDIMGTPNESLWPSVTKLPKYNPNI  246 (317)
T ss_dssp             SCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH---HHHHHHHHCSCCTTTCGGGGGCTTCCTTC
T ss_pred             ccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHH---HHHHHHHhCCCChhHhhhhhhhhhccccc
Confidence                          1246789999999999999999999976543211   1111111100000 0000000  000111


Q ss_pred             CC------------CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          546 ES------------FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       546 ~~------------~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..            ..+......+.+++.+||+.||++|||+.|+++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h  294 (317)
T 2pmi_A          247 QQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHH  294 (317)
T ss_dssp             CCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             ccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCC
Confidence            00            0011223468899999999999999999999874

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=1.6e-32  Score=283.54  Aligned_cols=218  Identities=22%  Similarity=0.325  Sum_probs=166.7

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||+|..  +|+.||||+++          ..+.+|+.++++++|+||+++++++.+. +..++||||+++|+|.+++.
T Consensus        46 g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~  124 (310)
T 2wqm_A           46 SEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIED-NELNIVLELADAGDLSRMIK  124 (310)
T ss_dssp             CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEET-TEEEEEEECCCSCBHHHHHH
T ss_pred             ceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcC-CcEEEEEecCCCCCHHHHHH
Confidence            58999996  78999999875          2477899999999999999999998764 47999999999999999996


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ......      ..+++..++.++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++...        
T Consensus       125 ~~~~~~------~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~  195 (310)
T 2wqm_A          125 HFKKQK------RLIPERTVWKYFVQLCSALEHMHSRR---VMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHS  195 (310)
T ss_dssp             HHHHTT------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCC---------------
T ss_pred             Hhcccc------cCCCHHHHHHHHHHHHHHHHHHhhCC---eeCCCCcHHHEEEcCCCCEEEEeccceeeecCCCccccc
Confidence            521110      13899999999999999999999998   9999999999999999999999999985431        


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ..++.++||||||+++|||++|+.||........ .+.              ..+.....+.+. 
T Consensus       196 ~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~-~~~--------------~~~~~~~~~~~~-  259 (310)
T 2wqm_A          196 LVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLY-SLC--------------KKIEQCDYPPLP-  259 (310)
T ss_dssp             ---CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHH-HHH--------------HHHHTTCSCCCC-
T ss_pred             cCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHH-HHH--------------HHhhcccCCCCc-
Confidence                           1245689999999999999999999865332111 000              011111111111 


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                        .......+.+++.+||+.||.+|||+.||++.|+.+...
T Consensus       260 --~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~  298 (310)
T 2wqm_A          260 --SDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHAC  298 (310)
T ss_dssp             --TTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             --ccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHh
Confidence              122334688999999999999999999999999988755

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=5.7e-32  Score=279.22  Aligned_cols=222  Identities=22%  Similarity=0.308  Sum_probs=164.3

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------------HHHHHHHHHHHhcC---CCCcccEEEEEEcCCC----cEEEEEeecC
Q 047629          343 KSVYRATI--DGKVLAVKKIK------------EDVTEELRILQRIN---HANLVKLMGVSSDSQG----NRFLVYEYAE  401 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------------~~~~~Ei~~l~~l~---H~niv~l~g~~~~~~~----~~~lV~E~~~  401 (615)
                      |.||++..  +|+.||||+++            ..+.+|++++++++   ||||+++++++.....    ..++||||++
T Consensus        23 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~  102 (308)
T 3g33_A           23 GTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVD  102 (308)
T ss_dssp             CCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECCSSSEEEEEEEEECCC
T ss_pred             eEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccCCCCceeEEEEehhhh
Confidence            58999995  78999999985            35778888888774   9999999999875442    3789999997


Q ss_pred             CCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC
Q 047629          402 NGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA  481 (615)
Q Consensus       402 ~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  481 (615)
                       |+|.+++......        .+++.++..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++..
T Consensus       103 -~~L~~~~~~~~~~--------~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~  170 (308)
T 3g33_A          103 -QDLRTYLDKAPPP--------GLPAETIKDLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIY  170 (308)
T ss_dssp             -CBHHHHHHTCCTT--------CSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCTTTEEECTTSCEEECSCSCTTTS
T ss_pred             -cCHHHHHhhccCC--------CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEcCCCCEEEeeCcccccc
Confidence             6999999865432        3899999999999999999999998   999999999999999999999999998653


Q ss_pred             C----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhh
Q 047629          482 T----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRN  539 (615)
Q Consensus       482 ~----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  539 (615)
                      .                      ..++.++|||||||++|||++|+.||......+.   ...+........  ......
T Consensus       171 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~---~~~i~~~~~~~~--~~~~~~  245 (308)
T 3g33_A          171 SYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQ---LGKIFDLIGLPP--EDDWPR  245 (308)
T ss_dssp             TTCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHH---HHHHHHHHCCCC--TTTSCS
T ss_pred             CCCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHHHhCCCC--hhhccc
Confidence            2                      1246789999999999999999999976442111   111111100000  000000


Q ss_pred             -------hcCCcCC---CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          540 -------WMDPNLE---SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       540 -------~~dp~l~---~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                             ...+...   .....+....+.+|+.+|++.||++|||+.|++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  297 (308)
T 3g33_A          246 DVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQH  297 (308)
T ss_dssp             SCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             hhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcC
Confidence                   0000000   00011234567899999999999999999999874

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=3.3e-32  Score=295.82  Aligned_cols=207  Identities=21%  Similarity=0.289  Sum_probs=165.5

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.||++..  +|+.+|+|.+.         ..+.+|++++++++||||+++++++.+. +..++||||+++|+|.+++..
T Consensus        25 g~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~-~~~~lv~E~~~gg~L~~~i~~  103 (444)
T 3soa_A           25 SVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEE-GHHYLIFDLVTGGELFEDIVA  103 (444)
T ss_dssp             CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECS-SEEEEEECCCBCCBHHHHHHH
T ss_pred             eEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEEC-CEEEEEEEeCCCCCHHHHHHH
Confidence            58999987  79999999874         2477899999999999999999998754 479999999999999999976


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeC---CCCcEEEeecCCCCCCCC-----
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD---SRFKAKIANFSLAAPATN-----  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld---~~~~~kl~DFGla~~~~~-----  483 (615)
                      ..          .+++..+..++.|++.||.|||+++   |+||||||+|||++   .++.+||+|||+++....     
T Consensus       104 ~~----------~~~e~~~~~i~~qil~aL~~lH~~g---ivHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~~  170 (444)
T 3soa_A          104 RE----------YYSEADASHCIQQILEAVLHCHQMG---VVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAW  170 (444)
T ss_dssp             CS----------CCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCBC
T ss_pred             cC----------CCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCcee
Confidence            54          3899999999999999999999998   99999999999998   457899999999964321     


Q ss_pred             ------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          484 ------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       484 ------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                        .++.++||||+||++|||++|+.||......   .....+             .....+  .
T Consensus       171 ~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~---~~~~~i-------------~~~~~~--~  232 (444)
T 3soa_A          171 FGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQH---RLYQQI-------------KAGAYD--F  232 (444)
T ss_dssp             CCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHH---HHHHHH-------------HHTCCC--C
T ss_pred             ecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHH---HHHHHH-------------HhCCCC--C
Confidence                              2567899999999999999999999754321   111100             011111  1


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ...........+.+|+..||+.||.+|||+.|++++
T Consensus       233 ~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~h  268 (444)
T 3soa_A          233 PSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKH  268 (444)
T ss_dssp             CTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             CccccccCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence            111111234467899999999999999999999875

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=4.3e-32  Score=289.93  Aligned_cols=208  Identities=22%  Similarity=0.291  Sum_probs=166.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||+|..  +|+.||+|.+.       ..+.+|+++|++++|+||+++++++.+. ...++||||+++|+|.+++....
T Consensus        65 g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~-~~~~lv~E~~~gg~L~~~l~~~~  143 (387)
T 1kob_A           65 GVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDK-YEMVLILEFLSGGELFDRIAAED  143 (387)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECS-SEEEEEEECCCCCBHHHHTTCTT
T ss_pred             EEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeC-CEEEEEEEcCCCCcHHHHHHhhc
Confidence            58999998  68999999885       2477899999999999999999998754 47999999999999999997654


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC--CCcEEEeecCCCCCCCC--------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS--RFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~--~~~~kl~DFGla~~~~~--------  483 (615)
                      .         .+++.++..++.|++.||+|||+++   |+||||||+|||++.  ++.+||+|||+++....        
T Consensus       144 ~---------~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~  211 (387)
T 1kob_A          144 Y---------KMSEAEVINYMRQACEGLKHMHEHS---IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTT  211 (387)
T ss_dssp             C---------CBCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEEC
T ss_pred             C---------CCCHHHHHHHHHHHHHHHHHHHhCC---eeecccchHHeEEecCCCCceEEEecccceecCCCcceeeec
Confidence            2         3899999999999999999999998   999999999999974  47899999999965421        


Q ss_pred             --------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          484 --------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       484 --------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                    .++.++|||||||++|||++|+.||......+   ..   ..           +.. .+.......
T Consensus       212 gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~---~~---~~-----------i~~-~~~~~~~~~  273 (387)
T 1kob_A          212 ATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLE---TL---QN-----------VKR-CDWEFDEDA  273 (387)
T ss_dssp             SSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH---HH---HH-----------HHH-CCCCCCSST
T ss_pred             cCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHH---HH---HH-----------HHh-CCCCCCccc
Confidence                          24568999999999999999999997543211   00   00           000 011111112


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .......+.+++..||+.||.+|||+.|+++.
T Consensus       274 ~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h  305 (387)
T 1kob_A          274 FSSVSPEAKDFIKNLLQKEPRKRLTVHDALEH  305 (387)
T ss_dssp             TTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             cccCCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence            22334567899999999999999999999985

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=2.4e-32  Score=277.53  Aligned_cols=204  Identities=25%  Similarity=0.391  Sum_probs=164.2

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||+|..  +|+.||||.+..          .+.+|++++++++||||+++++++.+. +..++||||+++|+|.+++.
T Consensus        25 g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~  103 (278)
T 3cok_A           25 AGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDS-NYVYLVLEMCHNGEMNRYLK  103 (278)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECS-SEEEEEEECCTTEEHHHHHH
T ss_pred             eEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccC-CeEEEEEecCCCCcHHHHHh
Confidence            48999997  789999999852          367899999999999999999998754 47899999999999999998


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ....         .+++.++..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||++....        
T Consensus       104 ~~~~---------~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~  171 (278)
T 3cok_A          104 NRVK---------PFSENEARHFMHQIITGMLYLHSHG---ILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYT  171 (278)
T ss_dssp             TCSS---------CCCHHHHHHHHHHHHHHHHHHHHTT---EECSSCCGGGEEECTTCCEEECCCTTCEECC--------
T ss_pred             hccC---------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCCEEEEeecceeeccCCCCccee
Confidence            6532         3899999999999999999999998   9999999999999999999999999986432        


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ...+.++||||||+++|||++|+.|+......+.                    +.......  .
T Consensus       172 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~--------------------~~~~~~~~--~  229 (278)
T 3cok_A          172 LCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNT--------------------LNKVVLAD--Y  229 (278)
T ss_dssp             --------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-------------------------CCSSC--C
T ss_pred             ccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHH--------------------HHHHhhcc--c
Confidence                           1135689999999999999999999976442211                    00111111  1


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..+......+.+++.+||+.||++|||++|+++.
T Consensus       230 ~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h  263 (278)
T 3cok_A          230 EMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLDH  263 (278)
T ss_dssp             CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             CCccccCHHHHHHHHHHcccCHhhCCCHHHHhcC
Confidence            1223334567899999999999999999999874

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=1.3e-32  Score=286.77  Aligned_cols=221  Identities=29%  Similarity=0.383  Sum_probs=171.7

Q ss_pred             ceEEEEEE-------CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI-------DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~-------~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||+|..       +++.||||.+.        ..+.+|+.++++++||||+++++++.+. +..++||||+++|+|.+
T Consensus        44 g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~  122 (327)
T 2yfx_A           44 GEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQS-LPRFILMELMAGGDLKS  122 (327)
T ss_dssp             SCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS-SSCEEEEECCTTEEHHH
T ss_pred             eeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCC-CCcEEEEecCCCCcHHH
Confidence            58999984       46789999984        3477899999999999999999998754 47899999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC---CCcEEEeecCCCCCC---
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS---RFKAKIANFSLAAPA---  481 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~---~~~~kl~DFGla~~~---  481 (615)
                      ++........   ....+++.+++.++.|++.||.|||+++   |+||||||+|||++.   +..+||+|||+++..   
T Consensus       123 ~l~~~~~~~~---~~~~~~~~~~~~i~~qi~~al~~LH~~~---i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~  196 (327)
T 2yfx_A          123 FLRETRPRPS---QPSSLAMLDLLHVARDIACGCQYLEENH---FIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRA  196 (327)
T ss_dssp             HHHHTSCCSS---STTSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC-
T ss_pred             HHHhhccccc---ccccccHHHHHHHHHHHHHHHHHHhhCC---eecCcCCHhHEEEecCCCcceEEECccccccccccc
Confidence            9987543211   1124899999999999999999999998   999999999999994   456999999987421   


Q ss_pred             ----------------------CCCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHh
Q 047629          482 ----------------------TNDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLR  538 (615)
Q Consensus       482 ----------------------~~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  538 (615)
                                            ...++.++||||||+++|||++ |+.|+......+   ..              ..+.
T Consensus       197 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~---~~--------------~~~~  259 (327)
T 2yfx_A          197 SYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQE---VL--------------EFVT  259 (327)
T ss_dssp             -----CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH---HH--------------HHHH
T ss_pred             cccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHH---HH--------------HHHh
Confidence                                  1124568999999999999998 888986543211   00              0111


Q ss_pred             hhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchhh
Q 047629          539 NWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTET  591 (615)
Q Consensus       539 ~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~~  591 (615)
                      ....+    ..+......+.+++..||+.||.+||++.|+++.|+.+.+....
T Consensus       260 ~~~~~----~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~~~~  308 (327)
T 2yfx_A          260 SGGRM----DPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDPDV  308 (327)
T ss_dssp             TTCCC----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCHHH
T ss_pred             cCCCC----CCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcCHHH
Confidence            11111    12233445688999999999999999999999999988776544

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=5e-33  Score=284.50  Aligned_cols=222  Identities=23%  Similarity=0.333  Sum_probs=165.8

Q ss_pred             ceEEEEEE-CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI-DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||++.. +|+.||||+++         ..+.+|++++++++||||+++++++.+. +..++||||+++ +|.+++...
T Consensus        16 g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~-~l~~~~~~~   93 (288)
T 1ob3_A           16 GVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTK-KRLVLVFEHLDQ-DLKKLLDVC   93 (288)
T ss_dssp             EEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECS-SCEEEEEECCSE-EHHHHHHTS
T ss_pred             EEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccC-CeEEEEEEecCC-CHHHHHHhc
Confidence            58999998 68999999884         3577999999999999999999998754 479999999985 999998764


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC-----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA-----------  481 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~-----------  481 (615)
                      ..         .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++..           
T Consensus        94 ~~---------~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  161 (288)
T 1ob3_A           94 EG---------GLESVTAKSFLLQLLNGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEI  161 (288)
T ss_dssp             TT---------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------
T ss_pred             cc---------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCCEEEeECccccccCcccccccccc
Confidence            33         3899999999999999999999998   999999999999999999999999987421           


Q ss_pred             -------------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHH-HHHHHh--hhcCCcC
Q 047629          482 -------------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEK-REERLR--NWMDPNL  545 (615)
Q Consensus       482 -------------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~--~~~dp~l  545 (615)
                                   ...++.++|||||||++|||++|+.||......+.  +. .+......... .-....  ...++..
T Consensus       162 ~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (288)
T 1ob3_A          162 VTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQ--LM-RIFRILGTPNSKNWPNVTELPKYDPNF  238 (288)
T ss_dssp             CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH--HH-HHHHHHCCCCTTTSTTGGGSTTCCTTC
T ss_pred             ccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH--HH-HHHHHHCCCChhhchhhhccccccccc
Confidence                         11256789999999999999999999976442111  11 11111000000 000000  0111111


Q ss_pred             C-------CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          546 E-------SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       546 ~-------~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .       ..+.......+.+|+.+||+.||++|||+.|++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  281 (288)
T 1ob3_A          239 TVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEH  281 (288)
T ss_dssp             CCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence            1       01112234567899999999999999999999864

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=3.5e-32  Score=297.88  Aligned_cols=203  Identities=26%  Similarity=0.438  Sum_probs=165.9

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||+|..  +|+.||||+++.          .+.+|+.+|++++||||+++++++... +..++||||+++|+|.+++.
T Consensus        30 g~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~-~~~~lv~E~~~gg~L~~~l~  108 (476)
T 2y94_A           30 GKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTP-SDIFMVMEYVSGGELFDYIC  108 (476)
T ss_dssp             SCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECS-SEEEEEEECCSSEEHHHHTT
T ss_pred             eEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC-CEEEEEEeCCCCCcHHHHHH
Confidence            58999997  699999999853          367899999999999999999998764 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND------  484 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~------  484 (615)
                      ...          .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++.....      
T Consensus       109 ~~~----------~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~  175 (476)
T 2y94_A          109 KNG----------RLDEKESRRLFQQILSGVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTS  175 (476)
T ss_dssp             SSS----------SCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCSGGGEEECTTCCEEECCCSSCEECCTTCCBCCC
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---CCcccccHHHEEEecCCCeEEEeccchhhcccccccccc
Confidence            643          3899999999999999999999998   999999999999999999999999998653211      


Q ss_pred             -----------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          485 -----------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       485 -----------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                       .+.++|||||||++|||++|+.||.......   +..              .+   .+...  
T Consensus       176 ~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~---~~~--------------~i---~~~~~--  233 (476)
T 2y94_A          176 CGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPT---LFK--------------KI---CDGIF--  233 (476)
T ss_dssp             CSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHH---HHH--------------HH---HTTCC--
T ss_pred             CCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHH---HHH--------------HH---hcCCc--
Confidence                             2458999999999999999999997543211   110              01   11111  


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..+......+.+|+.+||+.||.+|||+.|++++
T Consensus       234 ~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~h  267 (476)
T 2y94_A          234 YTPQYLNPSVISLLKHMLQVDPMKRATIKDIREH  267 (476)
T ss_dssp             CCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred             CCCccCCHHHHHHHHHHcCCCchhCcCHHHHHhC
Confidence            1122233457899999999999999999999984

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.7e-33  Score=290.13  Aligned_cols=203  Identities=26%  Similarity=0.356  Sum_probs=165.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||+|..  +|+.||||.+..          .+.+|++++++++||||+++++++... +..++||||+ +|+|.+++.
T Consensus        23 g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~-~~~~lv~E~~-~g~l~~~l~  100 (336)
T 3h4j_B           23 GKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTP-TDIVMVIEYA-GGELFDYIV  100 (336)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECS-SEEEEEECCC-CEEHHHHHH
T ss_pred             eEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeC-CEEEEEEECC-CCcHHHHHH
Confidence            58999997  789999999853          467899999999999999999998764 4799999999 789999987


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND------  484 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~------  484 (615)
                      ...          .+++.++..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++.....      
T Consensus       101 ~~~----------~l~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~~~~~  167 (336)
T 3h4j_B          101 EKK----------RMTEDEGRRFFQQIICAIEYCHRHK---IVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTS  167 (336)
T ss_dssp             HHC----------SCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBTTCCC
T ss_pred             HcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCchhhEEEcCCCCEEEEEeccceeccCCcccccc
Confidence            643          2899999999999999999999998   999999999999999999999999998653211      


Q ss_pred             -----------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          485 -----------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       485 -----------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                       .++++|||||||++|||++|+.||........                     .+.+... ..
T Consensus       168 ~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~---------------------~~~i~~~-~~  225 (336)
T 3h4j_B          168 CGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL---------------------FKKVNSC-VY  225 (336)
T ss_dssp             TTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC---------------------BCCCCSS-CC
T ss_pred             cCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHH---------------------HHHHHcC-CC
Confidence                             14579999999999999999999975432110                     0111110 11


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      ..+......+.+|+.+||+.||.+|||+.|+++.-
T Consensus       226 ~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp  260 (336)
T 3h4j_B          226 VMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRDP  260 (336)
T ss_dssp             CCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTTCH
T ss_pred             CCcccCCHHHHHHHHHHcCCChhHCcCHHHHHhCh
Confidence            22333445678999999999999999999998853

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=1.7e-32  Score=279.01  Aligned_cols=204  Identities=26%  Similarity=0.371  Sum_probs=165.8

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +++.||||++..          .+.+|+.++++++||||+++++++.+. +..++||||+++|+|.+++.
T Consensus        23 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~l~~~l~  101 (279)
T 3fdn_A           23 GNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDA-TRVYLILEYAPLGTVYRELQ  101 (279)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECS-SEEEEEECCCTTEEHHHHHH
T ss_pred             eEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecC-CEEEEEEecCCCCcHHHHHH
Confidence            58999988  578999999852          367899999999999999999998754 47899999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ...          .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||++....        
T Consensus       102 ~~~----------~~~~~~~~~~~~qi~~~l~~LH~~~---i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~  168 (279)
T 3fdn_A          102 KLS----------KFDEQRTATYITELANALSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLC  168 (279)
T ss_dssp             HHS----------SCCHHHHHHHHHHHHHHHHHHHTTT---CEECCCCGGGEEECTTSCEEECSCCEESCC--------C
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---EecccCChHhEEEcCCCCEEEEeccccccCCcccccccC
Confidence            643          2899999999999999999999998   9999999999999999999999999875431        


Q ss_pred             -------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          483 -------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       483 -------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                   ...+.++||||||+++|||++|+.||......+   ...              .+.. ...    .+
T Consensus       169 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~---~~~--------------~~~~-~~~----~~  226 (279)
T 3fdn_A          169 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE---TYK--------------RISR-VEF----TF  226 (279)
T ss_dssp             CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH---HHH--------------HHHH-TCC----CC
T ss_pred             CCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHH---HHH--------------HHHh-CCC----CC
Confidence                         124568999999999999999999997543111   110              0111 111    22


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      +......+.+++..||+.||.+||+++|++++-
T Consensus       227 ~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h~  259 (279)
T 3fdn_A          227 PDFVTEGARDLISRLLKHNPSQRPMLREVLEHP  259 (279)
T ss_dssp             CTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHCH
T ss_pred             CCcCCHHHHHHHHHHhccChhhCCCHHHHhhCc
Confidence            333345678999999999999999999999864

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=1.6e-32  Score=289.39  Aligned_cols=210  Identities=23%  Similarity=0.327  Sum_probs=162.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGKVLAVKKIK------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||++..  +|+.||||.++            +.+.+|+.++++++||||+++++++.+. +..++||||+++|+|.++
T Consensus        38 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~-~~~~lv~e~~~g~~L~~~  116 (351)
T 3c0i_A           38 SVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSD-GMLYMVFEFMDGADLCFE  116 (351)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEET-TEEEEEEECCSSCBHHHH
T ss_pred             EEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeC-CEEEEEEeCCCCCCHHHH
Confidence            58999987  68999999874            3477899999999999999999998764 479999999999999988


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCc---EEEeecCCCCCCC---
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSLAAPAT---  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~---~kl~DFGla~~~~---  482 (615)
                      +.......      ..+++..+..++.|++.||+|||+++   |+||||||+|||++.++.   +||+|||+++...   
T Consensus       117 l~~~~~~~------~~~~~~~~~~i~~qi~~al~~lH~~~---ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~  187 (351)
T 3c0i_A          117 IVKRADAG------FVYSEAVASHYMRQILEALRYCHDNN---IIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESG  187 (351)
T ss_dssp             HHHHHHTT------CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECSSSTTCCEEECCCTTCEECCTTS
T ss_pred             HHHhcccC------CCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCChHHeEEecCCCCCcEEEecCcceeEecCCC
Confidence            86532110      13899999999999999999999998   999999999999987654   9999999985432   


Q ss_pred             --------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          483 --------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       483 --------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                          ..++.++|||||||++|||++|+.||....    ..+...+             ......
T Consensus       188 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~----~~~~~~i-------------~~~~~~  250 (351)
T 3c0i_A          188 LVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK----ERLFEGI-------------IKGKYK  250 (351)
T ss_dssp             CBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH----HHHHHHH-------------HHTCCC
T ss_pred             eeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH----HHHHHHH-------------HcCCCC
Confidence                                124678999999999999999999997532    1111100             000000


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                        ............+.+|+.+||+.||++|||+.|++++
T Consensus       251 --~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h  287 (351)
T 3c0i_A          251 --MNPRQWSHISESAKDLVRRMLMLDPAERITVYEALNH  287 (351)
T ss_dssp             --CCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             --CCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence              0000001123457899999999999999999999874

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.98  E-value=3e-32  Score=278.70  Aligned_cols=209  Identities=21%  Similarity=0.368  Sum_probs=164.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcC---CCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDS---QGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~---~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||+|..  ++..||+|.+.         ..+.+|+.++++++||||+++++++...   +...++||||+++|+|.++
T Consensus        40 g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~  119 (290)
T 1t4h_A           40 KTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTY  119 (290)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHH
T ss_pred             eEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEEEEecCCCCHHHH
Confidence            58999988  67899999875         2367899999999999999999987642   2347999999999999999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeC-CCCcEEEeecCCCCCCC-----
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD-SRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld-~~~~~kl~DFGla~~~~-----  482 (615)
                      +....          .+++..+..++.|++.||.|||+++ ++|+||||||+|||++ .++.+||+|||++....     
T Consensus       120 l~~~~----------~~~~~~~~~~~~qi~~~l~~lH~~~-~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~  188 (290)
T 1t4h_A          120 LKRFK----------VMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAK  188 (290)
T ss_dssp             HHHHS----------SCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBE
T ss_pred             HHHcc----------CCCHHHHHHHHHHHHHHHHHHHcCC-CCEEECCCCHHHEEEECCCCCEEEeeCCCcccccccccc
Confidence            97643          3899999999999999999999984 3599999999999998 78999999999985432     


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ..++.++||||||+++|||++|+.||.........  .              ..+.....+   .
T Consensus       189 ~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~--~--------------~~~~~~~~~---~  249 (290)
T 1t4h_A          189 AVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQI--Y--------------RRVTSGVKP---A  249 (290)
T ss_dssp             ESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHH--H--------------HHHTTTCCC---G
T ss_pred             cccCCcCcCCHHHHhccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHH--H--------------HHHhccCCc---c
Confidence                           12467899999999999999999999754431110  0              011111111   1


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .++......+.+++..||+.||.+|||+.|++++
T Consensus       250 ~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h  283 (290)
T 1t4h_A          250 SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNH  283 (290)
T ss_dssp             GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             ccCCCCCHHHHHHHHHHccCChhhCCCHHHHhhC
Confidence            1122223458999999999999999999999864

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.98  E-value=1.8e-32  Score=279.88  Aligned_cols=212  Identities=25%  Similarity=0.336  Sum_probs=166.1

Q ss_pred             ceEEEEEE---CC--eEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI---DG--KVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~---~g--~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      +.||+|.+   ++  ..||||.++          +.+.+|++++++++|+||+++++++.+.  ..++|+||+++|+|.+
T Consensus        32 g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--~~~~v~e~~~~~~L~~  109 (291)
T 1u46_A           32 GVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP--PMKMVTELAPLGSLLD  109 (291)
T ss_dssp             CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS--SCEEEEECCTTCBHHH
T ss_pred             eeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccC--CceeeEecccCCCHHH
Confidence            58999986   23  368999885          2467899999999999999999998643  5899999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN----  483 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~----  483 (615)
                      ++.....         .+++.++..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++....    
T Consensus       110 ~l~~~~~---------~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~  177 (291)
T 1u46_A          110 RLRKHQG---------HFLLGTLSRYAVQVAEGMGYLESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDH  177 (291)
T ss_dssp             HHHHHGG---------GSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCE
T ss_pred             HHHhccC---------CcCHHHHHHHHHHHHHHHHHHHhCC---cccCCCchheEEEcCCCCEEEccccccccccccccc
Confidence            9976432         3899999999999999999999998   99999999999999999999999999865421    


Q ss_pred             ----------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhh
Q 047629          484 ----------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNW  540 (615)
Q Consensus       484 ----------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  540 (615)
                                            .++.++||||||+++|||++ |+.||......+   ..   .          ......
T Consensus       178 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~---~~---~----------~~~~~~  241 (291)
T 1u46_A          178 YVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQ---IL---H----------KIDKEG  241 (291)
T ss_dssp             EEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH---HH---H----------HHHTSC
T ss_pred             hhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHH---HH---H----------HHHccC
Confidence                                  12457999999999999999 999987543211   00   0          000111


Q ss_pred             cCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          541 MDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       541 ~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      ..+    ..+......+.+++.+||+.||.+||++.|+++.|+.+...
T Consensus       242 ~~~----~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  285 (291)
T 1u46_A          242 ERL----PRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT  285 (291)
T ss_dssp             CCC----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred             CCC----CCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence            111    12233445689999999999999999999999999877654

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.98  E-value=7.5e-33  Score=286.70  Aligned_cols=220  Identities=20%  Similarity=0.284  Sum_probs=170.4

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcC---CCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDS---QGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~---~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||||++.       +.+.+|++++++++||||+++++++...   ....++|+||+++|+|.+++.
T Consensus        43 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~  122 (317)
T 2buj_A           43 SYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIE  122 (317)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEEEECCTTCBHHHHHH
T ss_pred             eEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEEEEeCCCCcHHHHHH
Confidence            48999996  78999999873       3577899999999999999999998632   235799999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ......      ..+++.+++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...        
T Consensus       123 ~~~~~~------~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~  193 (317)
T 2buj_A          123 RLKDKG------NFLTEDQILWLLLGICRGLEAIHAKG---YAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQ  193 (317)
T ss_dssp             HHHTTT------CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCSSCEESCEEEESHHH
T ss_pred             HHHhcC------CCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEcCCCCEEEEecCcchhcccccccccc
Confidence            632110      13899999999999999999999998   9999999999999999999999999864321        


Q ss_pred             ------------------------C---CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHH
Q 047629          483 ------------------------N---DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREE  535 (615)
Q Consensus       483 ------------------------~---~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~  535 (615)
                                              .   .++.++||||||+++|||++|+.||..........     .          .
T Consensus       194 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~-----~----------~  258 (317)
T 2buj_A          194 ALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSV-----A----------L  258 (317)
T ss_dssp             HHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCH-----H----------H
T ss_pred             cccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchh-----h----------H
Confidence                                    0   13668999999999999999999985321100000     0          0


Q ss_pred             HHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchh
Q 047629          536 RLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE  590 (615)
Q Consensus       536 ~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~  590 (615)
                      .+.....    ...+......+.+++.+||+.||.+||++.|+++.|+.+.....
T Consensus       259 ~~~~~~~----~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~  309 (317)
T 2buj_A          259 AVQNQLS----IPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAP  309 (317)
T ss_dssp             HHHCC------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCC
T ss_pred             HhhccCC----CCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCC
Confidence            0111111    11112334568999999999999999999999999998876543

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.98  E-value=3.8e-32  Score=290.85  Aligned_cols=219  Identities=19%  Similarity=0.289  Sum_probs=168.3

Q ss_pred             ccccccccc----ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEE
Q 047629          334 NLSEHYSIG----KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLV  396 (615)
Q Consensus       334 ~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV  396 (615)
                      +|.....+|    |.||++..  +|+.||||++++          .+..|..++.++ +||||+++++++.+. +..++|
T Consensus        53 ~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~-~~~~lV  131 (396)
T 4dc2_A           53 DFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTE-SRLFFV  131 (396)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECS-SEEEEE
T ss_pred             HcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEEC-CEEEEE
Confidence            344444555    58999998  689999999863          267899999887 899999999998754 479999


Q ss_pred             EeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecC
Q 047629          397 YEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFS  476 (615)
Q Consensus       397 ~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  476 (615)
                      |||+++|+|.+++....          .+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||
T Consensus       132 ~E~~~gg~L~~~l~~~~----------~l~~~~~~~~~~qi~~aL~~LH~~g---ivHrDLKp~NILl~~~g~ikL~DFG  198 (396)
T 4dc2_A          132 IEYVNGGDLMFHMQRQR----------KLPEEHARFYSAEISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYG  198 (396)
T ss_dssp             EECCTTCBHHHHHHHHS----------SCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCT
T ss_pred             EEcCCCCcHHHHHHHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---EEeccCCHHHEEECCCCCEEEeecc
Confidence            99999999999997643          2899999999999999999999998   9999999999999999999999999


Q ss_pred             CCCCCC-----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHH--HHHHHHHHHhHHH
Q 047629          477 LAAPAT-----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAV--LWKEIREVLKVEE  531 (615)
Q Consensus       477 la~~~~-----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~--l~~~~~~~~~~~~  531 (615)
                      +++...                       ..++.++|||||||++|||++|+.||......+...  ....+.       
T Consensus       199 la~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~-------  271 (396)
T 4dc2_A          199 MCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLF-------  271 (396)
T ss_dssp             TCBCCCCTTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHH-------
T ss_pred             eeeecccCCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHH-------
Confidence            997521                       124568999999999999999999997533211100  000000       


Q ss_pred             HHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCH------HHHHHH
Q 047629          532 KREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNM------AEVVFN  581 (615)
Q Consensus       532 ~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm------~ev~~~  581 (615)
                         ..+.. ...    .+|......+.+|+..||+.||.+||++      .||+++
T Consensus       272 ---~~i~~-~~~----~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~H  319 (396)
T 4dc2_A          272 ---QVILE-KQI----RIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH  319 (396)
T ss_dssp             ---HHHHH-CCC----CCCTTSCHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHS
T ss_pred             ---HHHhc-ccc----CCCCcCCHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcC
Confidence               00110 111    2333444567899999999999999995      566653

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.98  E-value=9.4e-33  Score=288.05  Aligned_cols=212  Identities=22%  Similarity=0.306  Sum_probs=162.2

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----HHHHHHHHHHhcC-CCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----DVTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----~~~~Ei~~l~~l~-H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      |.||++..  +|+.||||++..    .+.+|+.++.++. ||||+++++++.+. ...++||||+++|+|.+++....  
T Consensus        25 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~--  101 (325)
T 3kn6_A           25 SICRKCVHKKSNQAFAVKIISKRMEANTQKEITALKLCEGHPNIVKLHEVFHDQ-LHTFLVMELLNGGELFERIKKKK--  101 (325)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEGGGHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-SEEEEEECCCCSCBHHHHHHHCS--
T ss_pred             eEEEEEEECCCCCEEEEEEEChhhhhhHHHHHHHHHHhcCCCCeeEEEEEEEcC-CEEEEEEEccCCCcHHHHHHhcC--
Confidence            58999998  589999999863    4678999999997 99999999998754 47899999999999999998654  


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC---cEEEeecCCCCCCC----------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF---KAKIANFSLAAPAT----------  482 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~---~~kl~DFGla~~~~----------  482 (615)
                              .+++.++..++.|++.||+|||+++   |+||||||+|||++.++   .+||+|||+++...          
T Consensus       102 --------~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  170 (325)
T 3kn6_A          102 --------HFSETEASYIMRKLVSAVSHMHDVG---VVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPC  170 (325)
T ss_dssp             --------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEC----CEEEECCCTTCEECCC---------
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHCC---CeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCcccccC
Confidence                    3899999999999999999999998   99999999999997665   89999999986431          


Q ss_pred             -------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC--CC
Q 047629          483 -------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL--ES  547 (615)
Q Consensus       483 -------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l--~~  547 (615)
                                   ..++.++|||||||++|||++|+.||.............             +.+..+.....  ..
T Consensus       171 ~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~  237 (325)
T 3kn6_A          171 FTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAV-------------EIMKKIKKGDFSFEG  237 (325)
T ss_dssp             -------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHH-------------HHHHHHTTTCCCCCS
T ss_pred             CCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHH-------------HHHHHHHcCCCCCCc
Confidence                         124568899999999999999999997643211000000             01111111111  11


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .........+.+|+..||+.||.+|||++|++++
T Consensus       238 ~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h  271 (325)
T 3kn6_A          238 EAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYN  271 (325)
T ss_dssp             HHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTTC
T ss_pred             ccccCCCHHHHHHHHHHCCCChhHCCCHHHHhcC
Confidence            1111234568999999999999999999999865

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.98  E-value=4.2e-32  Score=279.34  Aligned_cols=211  Identities=17%  Similarity=0.280  Sum_probs=166.3

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--HHHHHHHHHH-HhcCCCCcccEEEEEEc---CCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--EDVTEELRIL-QRINHANLVKLMGVSSD---SQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--~~~~~Ei~~l-~~l~H~niv~l~g~~~~---~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      |.||++..  +|+.||||+++  ..+.+|++++ +..+|+||+++++++..   .+...++||||+++|+|.+++.....
T Consensus        32 g~V~~~~~~~~~~~vaiK~~~~~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~  111 (299)
T 3m2w_A           32 GKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGD  111 (299)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEECCCCSCBHHHHHHHCTT
T ss_pred             eEEEEEEEcCCCcEEEEEEecccHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEeecCCCcHHHHHHhccC
Confidence            58999987  78999999986  5678899998 55699999999998764   23358999999999999999987543


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC---CCcEEEeecCCCCCCC-CCCCCccc
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS---RFKAKIANFSLAAPAT-NDVMPKFD  490 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~---~~~~kl~DFGla~~~~-~~~~~k~D  490 (615)
                      .        .+++.++..++.|++.||.|||+++   |+||||||+|||++.   ++.+||+|||+++... ..++.++|
T Consensus       112 ~--------~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~D  180 (299)
T 3m2w_A          112 Q--------AFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTGEKYDKSCD  180 (299)
T ss_dssp             C--------CCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSTTCCEEECCCTTCEECTTCGGGGHHH
T ss_pred             C--------CCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEecCCCCCcEEEeccccccccccccCCchhh
Confidence            1        3899999999999999999999998   999999999999998   7899999999997654 45788999


Q ss_pred             chhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC----hHHHHHHHHHHHHhhh
Q 047629          491 VFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP----IDGALSLATLARACTM  566 (615)
Q Consensus       491 V~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~----~~~~~~l~~l~~~C~~  566 (615)
                      ||||||++|||++|+.||........                 ...+...+... ...++    ......+.+++.+||+
T Consensus       181 iwslG~il~el~tg~~pf~~~~~~~~-----------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~  242 (299)
T 3m2w_A          181 MWSLGVIMYILLCGYPPFYSNHGLAI-----------------SPGMKTRIRMG-QYEFPNPEWSEVSEEVKMLIRNLLK  242 (299)
T ss_dssp             HHHHHHHHHHHHHSSCSCCC------------------------CCSCCSSCTT-CCSSCHHHHTTSCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHCCCCCCCCcchhh-----------------hHHHHHHHhhc-cccCCchhcccCCHHHHHHHHHHcc
Confidence            99999999999999999965432100                 00000000000 01111    1234568999999999


Q ss_pred             cCCCCCCCHHHHHHHH
Q 047629          567 DKSLSRPNMAEVVFNL  582 (615)
Q Consensus       567 ~dP~~RPsm~ev~~~L  582 (615)
                      .||.+|||+.|++++-
T Consensus       243 ~dP~~Rps~~e~l~hp  258 (299)
T 3m2w_A          243 TEPTQRMTITEFMNHP  258 (299)
T ss_dssp             SSTTTSCCHHHHHTSH
T ss_pred             cChhhCCCHHHHhcCh
Confidence            9999999999999853

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.98  E-value=4.6e-32  Score=290.62  Aligned_cols=232  Identities=22%  Similarity=0.328  Sum_probs=175.7

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCC-cEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQG-NRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~-~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.||+|..  +|+.||||+++        +.+.+|++++++++|+||+++++++.+.++ ..++||||+++|+|.+++..
T Consensus        23 g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~  102 (396)
T 4eut_A           23 ANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEE  102 (396)
T ss_dssp             EEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEECCCTTEEHHHHTTS
T ss_pred             eEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEEecCCCCCHHHHHHh
Confidence            58999998  58999999986        346789999999999999999999875443 57999999999999999976


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceee----CCCCcEEEeecCCCCCCCCC---
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL----DSRFKAKIANFSLAAPATND---  484 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl----d~~~~~kl~DFGla~~~~~~---  484 (615)
                      ....       ..+++..++.++.|++.||+|||+++   |+||||||+|||+    +.++.+||+|||+++.....   
T Consensus       103 ~~~~-------~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~~~  172 (396)
T 4eut_A          103 PSNA-------YGLPESEFLIVLRDVVGGMNHLRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQF  172 (396)
T ss_dssp             GGGT-------TCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCGGGS
T ss_pred             hhcc-------cCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCcCHHHEEEeecCCCceeEEEecCCCceEccCCCcc
Confidence            4321       13899999999999999999999998   9999999999999    88888999999999653211   


Q ss_pred             ---------------------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHH
Q 047629          485 ---------------------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERL  537 (615)
Q Consensus       485 ---------------------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  537 (615)
                                                 ++.++|||||||++|||++|+.||..........  ..+.......  ....+
T Consensus       173 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~--~~~~~~~~~~--p~~~~  248 (396)
T 4eut_A          173 VSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNK--EVMYKIITGK--PSGAI  248 (396)
T ss_dssp             SCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCH--HHHHHHHHSC--CTTCC
T ss_pred             ccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchH--HHHHHHhcCC--Ccccc
Confidence                                       1247899999999999999999997544322111  0011111000  00000


Q ss_pred             h---h-------hc-CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          538 R---N-------WM-DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       538 ~---~-------~~-dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      .   .       +. +.......+......+.+++..||+.||++||+++|+++.+..+...
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~  310 (396)
T 4eut_A          249 SGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR  310 (396)
T ss_dssp             EEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred             hhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence            0   0       00 00111234466777899999999999999999999999999877553

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.98  E-value=3.7e-32  Score=285.67  Aligned_cols=211  Identities=22%  Similarity=0.299  Sum_probs=165.2

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSS  416 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~  416 (615)
                      |.||++..  +|+.||||.++.   +..+|++++.++ +||||+++++++.+. ...++||||+++|+|.+++....   
T Consensus        36 g~V~~~~~~~~~~~~avK~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~-~~~~lv~E~~~gg~L~~~i~~~~---  111 (342)
T 2qr7_A           36 SVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDDG-KYVYVVTELMKGGELLDKILRQK---  111 (342)
T ss_dssp             EEEEEEEETTTTEEEEEEEEETTTCCCHHHHHHHHHHTTSTTBCCEEEEEECS-SEEEEEECCCCSCBHHHHHHTCT---
T ss_pred             EEEEEEEECCCCCEEEEEEEEcccCChHHHHHHHHHhcCCCCcCeEEEEEEcC-CEEEEEEeCCCCCcHHHHHHHcC---
Confidence            58999998  689999999964   357899999998 799999999998754 47899999999999999997653   


Q ss_pred             CCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC----CcEEEeecCCCCCCCCC--------
Q 047629          417 SSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR----FKAKIANFSLAAPATND--------  484 (615)
Q Consensus       417 ~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~----~~~kl~DFGla~~~~~~--------  484 (615)
                             .+++..+..++.|++.||+|||+++   |+||||||+|||+.++    +.+||+|||+++.....        
T Consensus       112 -------~~~~~~~~~~~~qi~~al~~lH~~g---ivHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  181 (342)
T 2qr7_A          112 -------FFSEREASAVLFTITKTVEYLHAQG---VVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPC  181 (342)
T ss_dssp             -------TCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCCBCCSS
T ss_pred             -------CCCHHHHHHHHHHHHHHHHHHHHCC---cEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCceeccC
Confidence                   3899999999999999999999998   9999999999998543    35999999998643211        


Q ss_pred             ---------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          485 ---------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       485 ---------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                     ++.++|||||||++|||++|+.||..........+...+             ...  ...+...+
T Consensus       182 gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i-------------~~~--~~~~~~~~  246 (342)
T 2qr7_A          182 YTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARI-------------GSG--KFSLSGGY  246 (342)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHH-------------HHC--CCCCCSTT
T ss_pred             CCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHH-------------ccC--CcccCccc
Confidence                           234789999999999999999999764322221111110             000  11122222


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      .......+.+|+..||+.||++||++.|++++-
T Consensus       247 ~~~~s~~~~~li~~~L~~dP~~R~t~~~il~hp  279 (342)
T 2qr7_A          247 WNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHP  279 (342)
T ss_dssp             TTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSH
T ss_pred             cccCCHHHHHHHHHHCCCChhHCcCHHHHhcCC
Confidence            333445688999999999999999999998853

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.98  E-value=4.8e-32  Score=284.03  Aligned_cols=227  Identities=21%  Similarity=0.245  Sum_probs=167.6

Q ss_pred             cccccccccc----ceEEEEEE--CCeEEEEEEccH------------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEE
Q 047629          333 MNLSEHYSIG----KSVYRATI--DGKVLAVKKIKE------------DVTEELRILQRINHANLVKLMGVSSDSQGNRF  394 (615)
Q Consensus       333 ~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~------------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~  394 (615)
                      +.|.....+|    |.||++..  +++.||+|+++.            .+.+|++++++++||||+++++++.+. +..+
T Consensus        26 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~-~~~~  104 (345)
T 3hko_A           26 KKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE-QYIC  104 (345)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS-SEEE
T ss_pred             hheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC-CeEE
Confidence            3444444454    58999987  688999998852            367899999999999999999998754 4799


Q ss_pred             EEEeecCCCCHHHhhccCCCCCC------------------------------CCCcccccCHHHHHHHHHHHHHHHHHH
Q 047629          395 LVYEYAENGSLDKWLHPKSKSSS------------------------------SSGSVIFLTWSQRLRVALDVANGLQYM  444 (615)
Q Consensus       395 lV~E~~~~GsL~~~L~~~~~~~~------------------------------~~~~~~~l~~~~~~~i~~~ia~gL~yL  444 (615)
                      +||||+++|+|.+++........                              .......+++..+..++.|++.||+||
T Consensus       105 lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~L  184 (345)
T 3hko_A          105 LVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYL  184 (345)
T ss_dssp             EEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999963110000                              000011256778899999999999999


Q ss_pred             HhCCCCCeEecCCCCCceeeCCCC--cEEEeecCCCCCCC-----------------------------CCCCCcccchh
Q 047629          445 HEHAQPSIVHRDIRTNNIQLDSRF--KAKIANFSLAAPAT-----------------------------NDVMPKFDVFA  493 (615)
Q Consensus       445 H~~~~~~ivHrDlk~~NILld~~~--~~kl~DFGla~~~~-----------------------------~~~~~k~DV~S  493 (615)
                      |+++   |+||||||+|||++.++  .+||+|||+++...                             ..++.++||||
T Consensus       185 H~~~---ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~Diws  261 (345)
T 3hko_A          185 HNQG---ICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWS  261 (345)
T ss_dssp             HHTT---EECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHH
T ss_pred             HHCC---ccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHH
Confidence            9998   99999999999998766  89999999985320                             22456899999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCC
Q 047629          494 FGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRP  573 (615)
Q Consensus       494 fGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RP  573 (615)
                      ||+++|||++|+.||......+.      +...          +....  .............+.+++..||+.||.+||
T Consensus       262 lG~il~el~~g~~pf~~~~~~~~------~~~~----------~~~~~--~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  323 (345)
T 3hko_A          262 AGVLLHLLLMGAVPFPGVNDADT------ISQV----------LNKKL--CFENPNYNVLSPLARDLLSNLLNRNVDERF  323 (345)
T ss_dssp             HHHHHHHHHHSSCSSCCSSHHHH------HHHH----------HHCCC--CTTSGGGGGSCHHHHHHHHHHSCSCTTTSC
T ss_pred             HHHHHHHHHHCCCCCCCCChHHH------HHHH----------Hhccc--ccCCcccccCCHHHHHHHHHHcCCChhHCC
Confidence            99999999999999975442111      1111          11100  010111112345688999999999999999


Q ss_pred             CHHHHHHH
Q 047629          574 NMAEVVFN  581 (615)
Q Consensus       574 sm~ev~~~  581 (615)
                      ++.|+++.
T Consensus       324 s~~~~l~h  331 (345)
T 3hko_A          324 DAMRALQH  331 (345)
T ss_dssp             CHHHHHHS
T ss_pred             CHHHHhcC
Confidence            99999885

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.98  E-value=1e-32  Score=296.94  Aligned_cols=229  Identities=18%  Similarity=0.221  Sum_probs=176.8

Q ss_pred             eeeHHHHHHHccccccccccc----ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEE
Q 047629          322 VYEIEVIMESTMNLSEHYSIG----KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGV  385 (615)
Q Consensus       322 ~~~~~~l~~at~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~  385 (615)
                      .+.++++....++|.....+|    |.||++..  +|+.||||++++          .+.+|..++.+++|+||++++++
T Consensus        50 ~~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~  129 (412)
T 2vd5_A           50 VVRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFA  129 (412)
T ss_dssp             HHHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEE
T ss_pred             hhhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEE
Confidence            345556666667777777776    58999998  689999999863          26789999999999999999999


Q ss_pred             EEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeC
Q 047629          386 SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD  465 (615)
Q Consensus       386 ~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld  465 (615)
                      +.+. +..++||||+++|+|.+++.....         .+++..+..++.||+.||+|||+++   |+||||||+|||++
T Consensus       130 ~~~~-~~~~lVmE~~~gg~L~~~l~~~~~---------~l~~~~~~~~~~qi~~aL~~LH~~g---iiHrDLKp~NILld  196 (412)
T 2vd5_A          130 FQDE-NYLYLVMEYYVGGDLLTLLSKFGE---------RIPAEMARFYLAEIVMAIDSVHRLG---YVHRDIKPDNILLD  196 (412)
T ss_dssp             EECS-SEEEEEECCCCSCBHHHHHHHHSS---------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEC
T ss_pred             EeeC-CEEEEEEcCCCCCcHHHHHHhcCC---------CCCHHHHHHHHHHHHHHHHHHHHCC---eeecccCHHHeeec
Confidence            8764 479999999999999999976432         3899999999999999999999998   99999999999999


Q ss_pred             CCCcEEEeecCCCCCCC-------------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCC
Q 047629          466 SRFKAKIANFSLAAPAT-------------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENG  514 (615)
Q Consensus       466 ~~~~~kl~DFGla~~~~-------------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~  514 (615)
                      .++.+||+|||+++...                               ..++.++|||||||++|||++|+.||......
T Consensus       197 ~~g~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~  276 (412)
T 2vd5_A          197 RCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTA  276 (412)
T ss_dssp             TTSCEEECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHH
T ss_pred             CCCCEEEeechhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHH
Confidence            99999999999985431                               11456899999999999999999999764321


Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCC---CCHHHHHHH
Q 047629          515 KTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSR---PNMAEVVFN  581 (615)
Q Consensus       515 ~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~R---Psm~ev~~~  581 (615)
                      +   ..   ......    ..   ...-|...    ......+.+|+.+|+. +|.+|   |++.|++++
T Consensus       277 ~---~~---~~i~~~----~~---~~~~p~~~----~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~H  328 (412)
T 2vd5_A          277 E---TY---GKIVHY----KE---HLSLPLVD----EGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTH  328 (412)
T ss_dssp             H---HH---HHHHTH----HH---HCCCC--------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTS
T ss_pred             H---HH---HHHHhc----cc---CcCCCccc----cCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcC
Confidence            1   11   111100    00   01112111    2233457899999999 99998   689998875

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.98  E-value=4.2e-32  Score=290.45  Aligned_cols=205  Identities=21%  Similarity=0.364  Sum_probs=165.0

Q ss_pred             ceEEEEEE-CCeEEEEEEcc---------HHHHHHHHHHHhcC--CCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI-DGKVLAVKKIK---------EDVTEELRILQRIN--HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~---------~~~~~Ei~~l~~l~--H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++.. +|+.||||+++         ..+.+|+++|.+++  |+||+++++++... ...++||| +.+|+|.+++.
T Consensus        70 g~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~-~~~~lv~E-~~~~~L~~~l~  147 (390)
T 2zmd_A           70 SKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITD-QYIYMVME-CGNIDLNSWLK  147 (390)
T ss_dssp             EEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-SEEEEEEE-CCSEEHHHHHH
T ss_pred             eEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecC-CEEEEEEe-cCCCCHHHHHH
Confidence            58999987 68999999884         34788999999996  59999999998764 47999999 56889999998


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------  483 (615)
                      ...          .+++.++..++.||+.||.|||+++   |+||||||+|||++ ++.+||+|||+++....       
T Consensus       148 ~~~----------~~~~~~~~~i~~qi~~aL~~lH~~~---ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~  213 (390)
T 2zmd_A          148 KKK----------SIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVK  213 (390)
T ss_dssp             HCS----------SCCHHHHHHHHHHHHHHHHHHHTTT---CCCCCCCGGGEEES-SSCEEECCCSSSCCC---------
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHEEEE-CCeEEEEecCccccccCCCccccC
Confidence            654          2889999999999999999999998   99999999999996 57899999999864311       


Q ss_pred             -----------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHH
Q 047629          484 -----------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKRE  534 (615)
Q Consensus       484 -----------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~  534 (615)
                                                   .++.++|||||||++|||++|+.||....+..                   
T Consensus       214 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~-------------------  274 (390)
T 2zmd_A          214 DSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI-------------------  274 (390)
T ss_dssp             CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH-------------------
T ss_pred             CCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHH-------------------
Confidence                                         24457899999999999999999997543210                   


Q ss_pred             HHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          535 ERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       535 ~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      ..+..++++.....++......+.+|+.+||+.||.+||++.|+++.-
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~hp  322 (390)
T 2zmd_A          275 SKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHP  322 (390)
T ss_dssp             HHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred             HHHHHHhCccccCCCCccchHHHHHHHHHHcccChhhCCCHHHHhhCc
Confidence            112233444443334444455688999999999999999999999763

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.98  E-value=1.1e-31  Score=273.27  Aligned_cols=207  Identities=23%  Similarity=0.326  Sum_probs=163.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.||++..  +|+.||+|++.         ..+.+|++++++++|+||+++++++.+. +..++||||+++|+|.+++..
T Consensus        20 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~~v~e~~~~~~l~~~~~~   98 (284)
T 3kk8_A           20 SVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEE-SFHYLVFDLVTGGELFEDIVA   98 (284)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEEEECCCCSCBHHHHHHH
T ss_pred             eEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcC-CEEEEEEecCCCCCHHHHHHh
Confidence            58999987  68999999985         2367899999999999999999998754 478999999999999999876


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCc---EEEeecCCCCCCC------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSLAAPAT------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~---~kl~DFGla~~~~------  482 (615)
                      ..          .+++..+..++.|++.||.|||+++   |+||||||+||+++.++.   +||+|||++....      
T Consensus        99 ~~----------~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~  165 (284)
T 3kk8_A           99 RE----------FYSEADASHCIQQILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWH  165 (284)
T ss_dssp             HS----------SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCBCC
T ss_pred             cC----------CCCHHHHHHHHHHHHHHHHHHHHCC---cCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCcccc
Confidence            53          3899999999999999999999998   999999999999987655   9999999985432      


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                      ..++.++||||||+++|||++|+.||.......   ....+             .....+  ..
T Consensus       166 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~---~~~~~-------------~~~~~~--~~  227 (284)
T 3kk8_A          166 GFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR---LYAQI-------------KAGAYD--YP  227 (284)
T ss_dssp             CSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHHHH-------------HHTCCC--CC
T ss_pred             CCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhH---HHHHH-------------Hhcccc--CC
Confidence                            124678999999999999999999997543211   11000             001111  00


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..........+.+++..|++.||++|||+.|+++.
T Consensus       228 ~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h  262 (284)
T 3kk8_A          228 SPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV  262 (284)
T ss_dssp             TTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             chhhcccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence            11112233457899999999999999999999985

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.98  E-value=1.9e-32  Score=288.19  Aligned_cols=212  Identities=25%  Similarity=0.362  Sum_probs=168.2

Q ss_pred             cccccccccc----ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEE
Q 047629          333 MNLSEHYSIG----KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRI-NHANLVKLMGVSSDSQGNRFL  395 (615)
Q Consensus       333 ~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~l  395 (615)
                      .+|.....+|    |.||++..  +|+.||||++++.          +..|..++.++ +||||+++++++.+. ...++
T Consensus        17 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~-~~~~l   95 (345)
T 1xjd_A           17 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTK-ENLFF   95 (345)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECS-SEEEE
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeC-CEEEE
Confidence            3444444454    58999998  6899999998743          45789999887 999999999998764 47999


Q ss_pred             EEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeec
Q 047629          396 VYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF  475 (615)
Q Consensus       396 V~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  475 (615)
                      ||||+++|+|.+++....          .+++.++..++.|++.||+|||+++   |+||||||+|||++.++.+||+||
T Consensus        96 v~E~~~gg~L~~~l~~~~----------~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~vkL~DF  162 (345)
T 1xjd_A           96 VMEYLNGGDLMYHIQSCH----------KFDLSRATFYAAEIILGLQFLHSKG---IVYRDLKLDNILLDKDGHIKIADF  162 (345)
T ss_dssp             EEECCTTCBHHHHHHHHS----------SCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCC
T ss_pred             EEeCCCCCcHHHHHHHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCChhhEEECCCCCEEEeEC
Confidence            999999999999997643          2899999999999999999999998   999999999999999999999999


Q ss_pred             CCCCCCC-----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHH
Q 047629          476 SLAAPAT-----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEK  532 (615)
Q Consensus       476 Gla~~~~-----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~  532 (615)
                      |+++...                       ..++.++|||||||++|||++|+.||......   .+...          
T Consensus       163 G~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~---~~~~~----------  229 (345)
T 1xjd_A          163 GMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEE---ELFHS----------  229 (345)
T ss_dssp             TTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHH----------
T ss_pred             hhhhhcccCCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHH---HHHHH----------
Confidence            9987431                       12467899999999999999999999754321   11110          


Q ss_pred             HHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHH-HHHH
Q 047629          533 REERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMA-EVVF  580 (615)
Q Consensus       533 ~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~-ev~~  580 (615)
                          +.. ..+.    ++......+.+++.+||+.||.+||++. |+.+
T Consensus       230 ----i~~-~~~~----~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~~  269 (345)
T 1xjd_A          230 ----IRM-DNPF----YPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQ  269 (345)
T ss_dssp             ----HHH-CCCC----CCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred             ----HHh-CCCC----CCcccCHHHHHHHHHHhcCCHhHcCCChHHHHc
Confidence                100 1122    2333345678999999999999999997 6654

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.98  E-value=4.8e-32  Score=275.14  Aligned_cols=203  Identities=22%  Similarity=0.312  Sum_probs=164.7

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||+|..  +++.+|+|++.       +.+.+|++++++++||||+++++++.+. +..++||||+++|+|.+++....
T Consensus        23 g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~~~  101 (277)
T 3f3z_A           23 GEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDN-TDIYLVMELCTGGELFERVVHKR  101 (277)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECS-SEEEEEEECCCSCBHHHHHHHHC
T ss_pred             EEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecC-CeEEEEEeccCCCcHHHHHHHcC
Confidence            58999998  56799999985       3578999999999999999999998754 47899999999999999987643


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceee---CCCCcEEEeecCCCCCCC--------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL---DSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl---d~~~~~kl~DFGla~~~~--------  482 (615)
                                .+++..+..++.|++.||.|||+++   |+||||||+|||+   +.++.+||+|||++....        
T Consensus       102 ----------~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~~~~~  168 (277)
T 3f3z_A          102 ----------VFRESDAARIMKDVLSAVAYCHKLN---VAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTK  168 (277)
T ss_dssp             ----------SCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSCBCCC
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccchhcc
Confidence                      3899999999999999999999998   9999999999999   788999999999985431        


Q ss_pred             -------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          483 -------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       483 -------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                   ..++.++||||||+++|||++|+.||......+.   ...              +.+. .    ..+
T Consensus       169 ~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~---~~~--------------~~~~-~----~~~  226 (277)
T 3f3z_A          169 VGTPYYVSPQVLEGLYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEV---MLK--------------IREG-T----FTF  226 (277)
T ss_dssp             CSCTTTCCHHHHTTCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHH---HHH--------------HHHC-C----CCC
T ss_pred             CCCCCccChHHhcccCCchhhehhHHHHHHHHHHCCCCCCCCCHHHH---HHH--------------HHhC-C----CCC
Confidence                         1246789999999999999999999976442111   100              0000 0    011


Q ss_pred             Ch----HHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          550 PI----DGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       550 ~~----~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +.    .....+.+++..|++.||++|||+.|+++.
T Consensus       227 ~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h  262 (277)
T 3f3z_A          227 PEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALEH  262 (277)
T ss_dssp             CHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             CchhhhcCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            11    223468899999999999999999999874

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.98  E-value=4e-32  Score=285.76  Aligned_cols=210  Identities=20%  Similarity=0.290  Sum_probs=163.8

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||++..  +|+.||||++++          .+.+|..++.++ +||||+++++++.+. +..++||||+++|+|.+++
T Consensus        23 g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~-~~~~lv~e~~~gg~L~~~l  101 (345)
T 3a8x_A           23 AKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTE-SRLFFVIEYVNGGDLMFHM  101 (345)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-SEEEEEECCCCSCBHHHHH
T ss_pred             eEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeC-CEEEEEEeCCCCCcHHHHH
Confidence            58999998  589999999863          256899999988 899999999998754 4799999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      ....          .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...       
T Consensus       102 ~~~~----------~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~~~~~  168 (345)
T 3a8x_A          102 QRQR----------KLPEEHARFYSAEISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTS  168 (345)
T ss_dssp             HHHS----------SCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTTCCBC
T ss_pred             HHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEECCCCCEEEEeccccccccCCCCccc
Confidence            7643          2899999999999999999999998   9999999999999999999999999987421       


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHH--HHHHHHHHHhHHHHHHHHHhhhcCCc
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAV--LWKEIREVLKVEEKREERLRNWMDPN  544 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~dp~  544 (615)
                                      ..++.++|||||||++|||++|+.||..........  ....+..          .+.. -.. 
T Consensus       169 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~----------~i~~-~~~-  236 (345)
T 3a8x_A          169 TFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQ----------VILE-KQI-  236 (345)
T ss_dssp             CCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHH----------HHHH-CCC-
T ss_pred             ccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHH----------HHHc-CCC-
Confidence                            124568999999999999999999997532211100  0000000          1111 011 


Q ss_pred             CCCCCChHHHHHHHHHHHHhhhcCCCCCCCH------HHHHHH
Q 047629          545 LESFYPIDGALSLATLARACTMDKSLSRPNM------AEVVFN  581 (615)
Q Consensus       545 l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm------~ev~~~  581 (615)
                         .+|......+.+|+.+||+.||.+||++      .|++++
T Consensus       237 ---~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~h  276 (345)
T 3a8x_A          237 ---RIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH  276 (345)
T ss_dssp             ---CCCTTSCHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTS
T ss_pred             ---CCCCCCCHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcC
Confidence               2333444568899999999999999995      566653

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.98  E-value=3.7e-32  Score=283.72  Aligned_cols=203  Identities=21%  Similarity=0.322  Sum_probs=160.3

Q ss_pred             ceEEEEEE-----CCeEEEEEEccH-----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI-----DGKVLAVKKIKE-----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~-----~g~~vAvK~~~~-----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      |.||++..     +|+.||+|++++           .+.+|+++|++++||||+++++++.+. +..++||||+++|+|.
T Consensus        31 g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~~lv~e~~~~~~L~  109 (327)
T 3a62_A           31 GKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTG-GKLYLILEYLSGGELF  109 (327)
T ss_dssp             EEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECS-SCEEEEEECCTTEEHH
T ss_pred             EEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcC-CEEEEEEeCCCCCcHH
Confidence            58999986     689999998852           256799999999999999999998754 4799999999999999


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----  482 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----  482 (615)
                      +++....          .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...    
T Consensus       110 ~~l~~~~----------~~~~~~~~~~~~qi~~al~~lH~~~---ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~  176 (327)
T 3a62_A          110 MQLEREG----------IFMEDTACFYLAEISMALGHLHQKG---IIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGT  176 (327)
T ss_dssp             HHHHHHS----------SCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCTTTEEECTTSCEEECCCSCC--------
T ss_pred             HHHHhCC----------CCCHHHHHHHHHHHHHHHHHHHhCC---EEcccCCHHHeEECCCCcEEEEeCCcccccccCCc
Confidence            9997643          2889999999999999999999998   9999999999999999999999999986421    


Q ss_pred             -------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCC
Q 047629          483 -------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDP  543 (615)
Q Consensus       483 -------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp  543 (615)
                                         ..++.++||||||+++|||++|+.||......+   ..   ...          ...  ..
T Consensus       177 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~---~~---~~i----------~~~--~~  238 (327)
T 3a62_A          177 VTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKK---TI---DKI----------LKC--KL  238 (327)
T ss_dssp             --CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH---HH---HHH----------HHT--CC
T ss_pred             cccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHH---HH---HHH----------HhC--CC
Confidence                               124568999999999999999999997543211   11   100          010  11


Q ss_pred             cCCCCCChHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHHH
Q 047629          544 NLESFYPIDGALSLATLARACTMDKSLSRP-----NMAEVVFN  581 (615)
Q Consensus       544 ~l~~~~~~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~~  581 (615)
                          .++......+.+++.+||+.||.+||     ++.|++++
T Consensus       239 ----~~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~h  277 (327)
T 3a62_A          239 ----NLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAH  277 (327)
T ss_dssp             ----CCCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHS
T ss_pred             ----CCCCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcC
Confidence                12333445688999999999999999     77788774

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.98  E-value=4.1e-32  Score=280.82  Aligned_cols=214  Identities=15%  Similarity=0.229  Sum_probs=167.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      +.||++..  +|+.||||.++          +.+.+|+.++++++||||+++++++... +..++|+||+++|+|.+++.
T Consensus        48 g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~  126 (309)
T 2h34_A           48 GDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEID-GQLYVDMRLINGVDLAAMLR  126 (309)
T ss_dssp             SEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEET-TEEEEEEECCCCEEHHHHHH
T ss_pred             eeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeC-CeEEEEEEecCCCCHHHHHH
Confidence            58999997  68999999985          3467899999999999999999998764 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ...          .+++.+++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...        
T Consensus       127 ~~~----------~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~  193 (309)
T 2h34_A          127 RQG----------PLAPPRAVAIVRQIGSALDAAHAAG---ATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQLG  193 (309)
T ss_dssp             HHC----------SCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECSCCC-------------
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHHCc---CCcCCCChHHEEEcCCCCEEEecCccCcccccccccccc
Confidence            643          3899999999999999999999998   9999999999999999999999999975431        


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                      ..++.++||||||+++|||++|+.||.....   .    .+..          .+..... . .
T Consensus       194 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~---~----~~~~----------~~~~~~~-~-~  254 (309)
T 2h34_A          194 NTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQL---S----VMGA----------HINQAIP-R-P  254 (309)
T ss_dssp             ---CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHH---H----HHHH----------HHHSCCC-C-G
T ss_pred             ccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchH---H----HHHH----------HhccCCC-C-c
Confidence                            1235689999999999999999999975321   0    0111          1111110 0 0


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHhcccch
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRP-NMAEVVFNLSVLTQST  589 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RP-sm~ev~~~L~~l~~~~  589 (615)
                      ...+......+.+++.+||+.||++|| +++++++.|+.+....
T Consensus       255 ~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~  298 (309)
T 2h34_A          255 STVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATA  298 (309)
T ss_dssp             GGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC--
T ss_pred             cccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhh
Confidence            112223334578999999999999999 9999999998776553

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.98  E-value=8.8e-33  Score=280.68  Aligned_cols=214  Identities=23%  Similarity=0.334  Sum_probs=166.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcC-CCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDS-QGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~-~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||+|.+.         +.+.+|++++++++||||+++++++.+. ++..++||||+++|+|.+++.
T Consensus        20 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~   99 (279)
T 2w5a_A           20 GRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVIT   99 (279)
T ss_dssp             SEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEEEECCTTEEHHHHHH
T ss_pred             cEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEEEeCCCCCCHHHHHH
Confidence            58999998  68999999985         2477899999999999999999987542 346899999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCC--CCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA--QPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~--~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      ......      ..+++..++.++.|++.||+|||+++  ..+++||||||+||+++.++.+||+|||+++...      
T Consensus       100 ~~~~~~------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~  173 (279)
T 2w5a_A          100 KGTKER------QYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFA  173 (279)
T ss_dssp             HHHHTT------CCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHHHC---CHHH
T ss_pred             hhcccC------CCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchheeeccccccc
Confidence            533211      13899999999999999999999975  2349999999999999999999999999875432      


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                       ..++.++||||||+++|||++|+.|+......   ....              .+....-+.+
T Consensus       174 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~---~~~~--------------~i~~~~~~~~  236 (279)
T 2w5a_A          174 KTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK---ELAG--------------KIREGKFRRI  236 (279)
T ss_dssp             HHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHH--------------HHHHTCCCCC
T ss_pred             cccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHH---HHHH--------------HHhhcccccC
Confidence                             12456899999999999999999998754321   1110              1111111122


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                          +......+.+++.+||+.||.+||++.|+++.+.
T Consensus       237 ----~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~  270 (279)
T 2w5a_A          237 ----PYRYSDELNEIITRMLNLKDYHRPSVEEILENPL  270 (279)
T ss_dssp             ----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTT
T ss_pred             ----CcccCHHHHHHHHHHcCCCcccCCCHHHHHhChh
Confidence                2333456899999999999999999999998764

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.98  E-value=1.7e-32  Score=298.70  Aligned_cols=212  Identities=23%  Similarity=0.313  Sum_probs=165.5

Q ss_pred             ccccccccc----ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEE
Q 047629          334 NLSEHYSIG----KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRINHANLVKLMGVSSDSQGNRFLVY  397 (615)
Q Consensus       334 ~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~  397 (615)
                      +|.....+|    |.||++..  +|+.||||+++.+          +.+|+.++++++||||+++++++.+. +..++||
T Consensus       149 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~-~~~~lv~  227 (446)
T 4ejn_A          149 EFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTH-DRLCFVM  227 (446)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEET-TEEEEEE
T ss_pred             HcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeC-CEEEEEE
Confidence            344444555    58999987  6899999998743          45789999999999999999998764 4799999


Q ss_pred             eecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHh-CCCCCeEecCCCCCceeeCCCCcEEEeecC
Q 047629          398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE-HAQPSIVHRDIRTNNIQLDSRFKAKIANFS  476 (615)
Q Consensus       398 E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~ivHrDlk~~NILld~~~~~kl~DFG  476 (615)
                      ||+++|+|.+++....          .+++..+..++.|++.||+|||+ ++   |+||||||+|||++.++.+||+|||
T Consensus       228 e~~~~~~L~~~l~~~~----------~~~~~~~~~~~~qi~~aL~~LH~~~g---iiHrDlkp~NIll~~~~~~kl~DFG  294 (446)
T 4ejn_A          228 EYANGGELFFHLSRER----------VFSEDRARFYGAEIVSALDYLHSEKN---VVYRDLKLENLMLDKDGHIKITDFG  294 (446)
T ss_dssp             CCCSSCBHHHHHHHHS----------CCCHHHHHHHHHHHHHHHHHHHHHTC---CCCCCCCGGGEEECSSSCEEECCCC
T ss_pred             eeCCCCcHHHHHHhcC----------CCCHHHHHHHHHHHHHHHHHHhhcCC---EEECCCCHHHEEECCCCCEEEccCC
Confidence            9999999999997643          38999999999999999999998 77   9999999999999999999999999


Q ss_pred             CCCCCC-----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHH
Q 047629          477 LAAPAT-----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKR  533 (615)
Q Consensus       477 la~~~~-----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~  533 (615)
                      +++...                       ..++.++|||||||++|||++|+.||.......   +..    .       
T Consensus       295 ~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~---~~~----~-------  360 (446)
T 4ejn_A          295 LCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK---LFE----L-------  360 (446)
T ss_dssp             CCCTTCC-----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHH----H-------
T ss_pred             CceeccCCCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHH---HHH----H-------
Confidence            987531                       125678999999999999999999997543211   110    0       


Q ss_pred             HHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHHH
Q 047629          534 EERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRP-----NMAEVVFN  581 (615)
Q Consensus       534 ~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~~  581 (615)
                        ...  -..    .++......+.+|+..||+.||.+||     +++|++++
T Consensus       361 --i~~--~~~----~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~h  405 (446)
T 4ejn_A          361 --ILM--EEI----RFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQH  405 (446)
T ss_dssp             --HHH--CCC----CCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             --HHh--CCC----CCCccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHhC
Confidence              001  011    12333445688999999999999999     99999875

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.98  E-value=1.1e-32  Score=290.39  Aligned_cols=224  Identities=21%  Similarity=0.231  Sum_probs=171.3

Q ss_pred             ceEEEEEEC----------CeEEEEEEccH--HHHHHHHHHHhcCCCCccc---------------EEEEEEcCCCcEEE
Q 047629          343 KSVYRATID----------GKVLAVKKIKE--DVTEELRILQRINHANLVK---------------LMGVSSDSQGNRFL  395 (615)
Q Consensus       343 ~~Vy~~~~~----------g~~vAvK~~~~--~~~~Ei~~l~~l~H~niv~---------------l~g~~~~~~~~~~l  395 (615)
                      |.||+|...          ++.||||.++.  .+.+|++++++++|+||++               +++++...++..++
T Consensus        56 g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l  135 (352)
T 2jii_A           56 GILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFL  135 (352)
T ss_dssp             EEEEEEEECC-----------CEEEEEEETTSTHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCCCCEEEEETTTEEEE
T ss_pred             eEEEEEeecCCccccccccCceEEEEEecccchHHHHHHHHHHhcccchhhhhhhhccCCccCccchhhccccCCcEEEE
Confidence            589999872          78999999975  4899999999999999998               67777654557899


Q ss_pred             EEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC--cEEEe
Q 047629          396 VYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF--KAKIA  473 (615)
Q Consensus       396 V~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~--~~kl~  473 (615)
                      ||||+ +|+|.+++.....        ..+++.+++.++.|++.||.|||+++   |+||||||+|||++.++  .+||+
T Consensus       136 v~e~~-~~~L~~~l~~~~~--------~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dikp~NIl~~~~~~~~~kl~  203 (352)
T 2jii_A          136 VLPSL-GRSLQSALDVSPK--------HVLSERSVLQVACRLLDALEFLHENE---YVHGNVTAENIFVDPEDQSQVTLA  203 (352)
T ss_dssp             EEECC-CEEHHHHHHHSGG--------GCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCGGGEEEETTEEEEEEEC
T ss_pred             EecCC-CcCHHHHHHhCCc--------CCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCHHHEEEcCCCCceEEEe
Confidence            99999 9999999986521        13899999999999999999999998   99999999999999998  99999


Q ss_pred             ecCCCCCCC------------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHH
Q 047629          474 NFSLAAPAT------------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEI  523 (615)
Q Consensus       474 DFGla~~~~------------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~  523 (615)
                      |||+++...                              ..++.++||||||+++|||++|+.||.......... ..  
T Consensus       204 Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~-~~--  280 (352)
T 2jii_A          204 GYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDI-MK--  280 (352)
T ss_dssp             CGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHH-HH--
T ss_pred             cCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCHHHH-HH--
Confidence            999995421                              123568999999999999999999998654222111 10  


Q ss_pred             HHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          524 REVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                        ..   .........+.++...   .......+.+++..||+.||++||++.|+++.|+.+.+..
T Consensus       281 --~~---~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~  338 (352)
T 2jii_A          281 --QK---QKFVDKPGPFVGPCGH---WIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDL  338 (352)
T ss_dssp             --HH---HHHHHSCCCEECTTSC---EECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             --HH---HhccCChhhhhhhccc---cCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhc
Confidence              00   0001111112211111   0122356899999999999999999999999999887553

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.98  E-value=2.1e-32  Score=286.67  Aligned_cols=197  Identities=24%  Similarity=0.336  Sum_probs=163.1

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCC-C
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENG-S  404 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~G-s  404 (615)
                      |.||++..  +|+.||||.++.               .+.+|++++++++|+||+++++++.+. +..++||||+.+| +
T Consensus        38 g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~-~~~~lv~e~~~~g~~  116 (335)
T 3dls_A           38 GFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ-GFFQLVMEKHGSGLD  116 (335)
T ss_dssp             CSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS-SEEEEEEECCTTSCB
T ss_pred             EEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC-CEEEEEEEeCCCCcc
Confidence            58999986  789999998863               245799999999999999999998754 4789999999877 9


Q ss_pred             HHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-
Q 047629          405 LDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-  483 (615)
Q Consensus       405 L~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-  483 (615)
                      |.+++....          .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++.... 
T Consensus       117 l~~~~~~~~----------~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~  183 (335)
T 3dls_A          117 LFAFIDRHP----------RLDEPLASYIFRQLVSAVGYLRLKD---IIHRDIKDENIVIAEDFTIKLIDFGSAAYLERG  183 (335)
T ss_dssp             HHHHHHTCC----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred             HHHHHHhcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---eEEeccCHHHEEEcCCCcEEEeecccceECCCC
Confidence            999997654          2899999999999999999999998   99999999999999999999999999864321 


Q ss_pred             ---------------------C-CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          484 ---------------------D-VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       484 ---------------------~-~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                           . .+.++||||||+++|||++|+.||.....                      ......
T Consensus       184 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~----------------------~~~~~~  241 (335)
T 3dls_A          184 KLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEE----------------------TVEAAI  241 (335)
T ss_dssp             CCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG----------------------GTTTCC
T ss_pred             CceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHH----------------------HHhhcc
Confidence                                 1 25678999999999999999999964221                      001111


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .      .+......+.+|+..||+.||++|||+.|+++.
T Consensus       242 ~------~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~h  275 (335)
T 3dls_A          242 H------PPYLVSKELMSLVSGLLQPVPERRTTLEKLVTD  275 (335)
T ss_dssp             C------CSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred             C------CCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            1      112233457899999999999999999999986

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.98  E-value=5.4e-32  Score=278.62  Aligned_cols=205  Identities=25%  Similarity=0.402  Sum_probs=167.4

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||+|..  +|+.||||.++        +.+.+|+.++++++|+||+++++++.+. +..++||||+++|+|.+++...
T Consensus        36 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~~  114 (303)
T 3a7i_A           36 GEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKD-TKLWIIMEYLGGGSALDLLEPG  114 (303)
T ss_dssp             SEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEET-TEEEEEEECCTTEEHHHHHTTS
T ss_pred             eEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecC-CeEEEEEEeCCCCcHHHHHhcC
Confidence            58999987  68999999985        4578999999999999999999998764 4789999999999999999642


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                                 .+++..+..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||++....          
T Consensus       115 -----------~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  180 (303)
T 3a7i_A          115 -----------PLDETQIATILREILKGLDYLHSEK---KIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFV  180 (303)
T ss_dssp             -----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECBTTBCCBCCCC
T ss_pred             -----------CCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCChheEEECCCCCEEEeecccceecCccccccCccC
Confidence                       2899999999999999999999998   9999999999999999999999999985421          


Q ss_pred             -------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          483 -------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       483 -------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                   ..++.++||||||+++|||++|+.|+.......   ..              ..+.....+.+...+
T Consensus       181 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~---~~--------------~~~~~~~~~~~~~~~  243 (303)
T 3a7i_A          181 GTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMK---VL--------------FLIPKNNPPTLEGNY  243 (303)
T ss_dssp             SCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH---HH--------------HHHHHSCCCCCCSSC
T ss_pred             CCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHH---HH--------------HHhhcCCCCCCcccc
Confidence                         124568999999999999999999987543211   00              011111223333333


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                          ...+.+++..||+.||.+|||+.|+++...
T Consensus       244 ----~~~l~~li~~~l~~dp~~Rps~~~ll~~~~  273 (303)
T 3a7i_A          244 ----SKPLKEFVEACLNKEPSFRPTAKELLKHKF  273 (303)
T ss_dssp             ----CHHHHHHHHHHCCSSGGGSCCHHHHTTCHH
T ss_pred             ----CHHHHHHHHHHcCCChhhCcCHHHHhhChh
Confidence                345789999999999999999999998643

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.98  E-value=6.3e-32  Score=275.44  Aligned_cols=203  Identities=23%  Similarity=0.332  Sum_probs=166.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +++.||||.+.          ..+.+|++++++++|+||+++++++.+. +..++||||+++|+|.+++.
T Consensus        28 g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~  106 (284)
T 2vgo_A           28 GNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDR-KRIYLMLEFAPRGELYKELQ  106 (284)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECS-SEEEEEECCCTTEEHHHHHH
T ss_pred             eEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcC-CEEEEEEEeCCCCcHHHHHH
Confidence            58999998  57899999985          2467899999999999999999998754 47899999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ...          .+++..+..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||++....        
T Consensus       107 ~~~----------~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~  173 (284)
T 2vgo_A          107 KHG----------RFDEQRSATFMEELADALHYCHERK---VIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRTMC  173 (284)
T ss_dssp             HHS----------SCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECTTCCEEECCCTTCEECSSSCBCCCC
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEEcCCCCEEEecccccccCccccccccc
Confidence            643          2899999999999999999999998   9999999999999999999999999885321        


Q ss_pred             -------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          483 -------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       483 -------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                   ..++.++||||||+++|||++|+.||......+   ..   .           .+.. .+.    .+
T Consensus       174 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---~~---~-----------~~~~-~~~----~~  231 (284)
T 2vgo_A          174 GTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTE---TH---R-----------RIVN-VDL----KF  231 (284)
T ss_dssp             SCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH---HH---H-----------HHHT-TCC----CC
T ss_pred             CCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhH---HH---H-----------HHhc-ccc----CC
Confidence                         124678999999999999999999997543211   00   0           0110 111    22


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +......+.+++..|++.||.+||++.|++++
T Consensus       232 ~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~h  263 (284)
T 2vgo_A          232 PPFLSDGSKDLISKLLRYHPPQRLPLKGVMEH  263 (284)
T ss_dssp             CTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTC
T ss_pred             CCcCCHHHHHHHHHHhhcCHhhCCCHHHHhhC
Confidence            33334567899999999999999999999875

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.98  E-value=4.5e-32  Score=286.27  Aligned_cols=233  Identities=20%  Similarity=0.245  Sum_probs=170.4

Q ss_pred             cccccccccc----ceEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhcC-----CCCcccEEEEEEcCCCcEEE
Q 047629          333 MNLSEHYSIG----KSVYRATI--DGKVLAVKKIK------EDVTEELRILQRIN-----HANLVKLMGVSSDSQGNRFL  395 (615)
Q Consensus       333 ~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l~-----H~niv~l~g~~~~~~~~~~l  395 (615)
                      ++|.....+|    |.||++..  +|+.||||+++      ..+..|++++.+++     |+||+++++++... +..++
T Consensus        35 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~-~~~~l  113 (360)
T 3llt_A           35 NAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYY-DHMCL  113 (360)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEET-TEEEE
T ss_pred             CEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeEC-CeeEE
Confidence            3444444555    58999998  78999999986      34677999999996     99999999998764 47999


Q ss_pred             EEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC---------
Q 047629          396 VYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS---------  466 (615)
Q Consensus       396 V~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~---------  466 (615)
                      ||||+ +|+|.+++......        .+++..+..++.|++.||+|||+++   |+||||||+|||++.         
T Consensus       114 v~e~~-~~~L~~~~~~~~~~--------~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~~~~~~  181 (360)
T 3llt_A          114 IFEPL-GPSLYEIITRNNYN--------GFHIEDIKLYCIEILKALNYLRKMS---LTHTDLKPENILLDDPYFEKSLIT  181 (360)
T ss_dssp             EECCC-CCBHHHHHHHTTTC--------CCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCTTCCEEEEE
T ss_pred             EEcCC-CCCHHHHHHhcCCC--------CCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCcccEEEccccccccccc
Confidence            99999 89999999865432        3899999999999999999999998   999999999999986         


Q ss_pred             ----------------CCcEEEeecCCCCCCC--------------------CCCCCcccchhHHHHHHHHHcCCCCCCC
Q 047629          467 ----------------RFKAKIANFSLAAPAT--------------------NDVMPKFDVFAFGVVLLELLSGKKATRT  510 (615)
Q Consensus       467 ----------------~~~~kl~DFGla~~~~--------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~  510 (615)
                                      ++.+||+|||+++...                    ..++.++|||||||++|||++|+.||..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~  261 (360)
T 3llt_A          182 VRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRT  261 (360)
T ss_dssp             EECTTTCCEEEEEEESCCCEEECCCTTCEETTSCCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             hhcccccccccccccCCCCEEEEeccCceecCCCCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCC
Confidence                            7899999999986432                    2356799999999999999999999976


Q ss_pred             CCCChhHHHHHHHHHHHhH--HHHHHHH----HhhhcC-CcCCCCCCh--------------------HHHHHHHHHHHH
Q 047629          511 TENGKTAVLWKEIREVLKV--EEKREER----LRNWMD-PNLESFYPI--------------------DGALSLATLARA  563 (615)
Q Consensus       511 ~~~~~~~~l~~~~~~~~~~--~~~~~~~----~~~~~d-p~l~~~~~~--------------------~~~~~l~~l~~~  563 (615)
                      ....+...   .+......  .......    ....++ ..+...++.                    .....+.+|+.+
T Consensus       262 ~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  338 (360)
T 3llt_A          262 HEHMEHLA---MMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYS  338 (360)
T ss_dssp             SSHHHHHH---HHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHH
T ss_pred             CcHHHHHH---HHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHHH
Confidence            54322111   11111100  0000000    000000 000001110                    011457799999


Q ss_pred             hhhcCCCCCCCHHHHHHH
Q 047629          564 CTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       564 C~~~dP~~RPsm~ev~~~  581 (615)
                      ||+.||++|||++|+++.
T Consensus       339 ~L~~dP~~Rpta~elL~h  356 (360)
T 3llt_A          339 ILQIDPTLRPSPAELLKH  356 (360)
T ss_dssp             HCCSSGGGSCCHHHHTTS
T ss_pred             HhcCChhhCCCHHHHhcC
Confidence            999999999999999753

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.98  E-value=4.5e-32  Score=285.08  Aligned_cols=221  Identities=19%  Similarity=0.205  Sum_probs=166.9

Q ss_pred             ceEEEEEE-----CCeEEEEEEccH------------------HHHHHHHHHHhcCCCCcccEEEEEEcC---CCcEEEE
Q 047629          343 KSVYRATI-----DGKVLAVKKIKE------------------DVTEELRILQRINHANLVKLMGVSSDS---QGNRFLV  396 (615)
Q Consensus       343 ~~Vy~~~~-----~g~~vAvK~~~~------------------~~~~Ei~~l~~l~H~niv~l~g~~~~~---~~~~~lV  396 (615)
                      |.||+|..     ++..+|||++..                  .+.+|+..+..++|+||+++++++...   +...++|
T Consensus        51 g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv  130 (345)
T 2v62_A           51 GLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTEFKGRSYRFMV  130 (345)
T ss_dssp             -CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEEEEEESSSCEEEEEE
T ss_pred             eEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecccccccCCCcEEEEE
Confidence            58999998     468899998742                  245677888889999999999998752   3468999


Q ss_pred             EeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC--cEEEee
Q 047629          397 YEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF--KAKIAN  474 (615)
Q Consensus       397 ~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~--~~kl~D  474 (615)
                      |||+ +|+|.+++....          .+++.+++.++.|++.||+|||+++   |+||||||+|||++.++  .+||+|
T Consensus       131 ~e~~-~~~L~~~l~~~~----------~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~~~kL~D  196 (345)
T 2v62_A          131 MERL-GIDLQKISGQNG----------TFKKSTVLQLGIRMLDVLEYIHENE---YVHGDIKAANLLLGYKNPDQVYLAD  196 (345)
T ss_dssp             EECE-EEEHHHHCBGGG----------BCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEESSSTTSEEECC
T ss_pred             Eecc-CCCHHHHHHhcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCcCHHHEEEccCCCCcEEEEe
Confidence            9999 999999997643          3899999999999999999999998   99999999999999887  999999


Q ss_pred             cCCCCCCC------------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHH
Q 047629          475 FSLAAPAT------------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIR  524 (615)
Q Consensus       475 FGla~~~~------------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~  524 (615)
                      ||+++...                              ..++.++|||||||++|||++|+.||............  ..
T Consensus       197 fg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~--~~  274 (345)
T 2v62_A          197 YGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQT--AK  274 (345)
T ss_dssp             CTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHH--HH
T ss_pred             CCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHH--HH
Confidence            99995321                              11456899999999999999999999653322211111  11


Q ss_pred             HHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          525 EVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       525 ~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      ....  ......+.+...       .......+.+++..||+.||++||++.||++.|+.+...
T Consensus       275 ~~~~--~~~~~~~~~~~~-------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~  329 (345)
T 2v62_A          275 TNLL--DELPQSVLKWAP-------SGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGIP  329 (345)
T ss_dssp             HHHH--HTTTHHHHHHSC-------TTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCCC
T ss_pred             Hhhc--ccccHHHHhhcc-------ccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCCc
Confidence            0000  000011111111       012334689999999999999999999999999876543

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.98  E-value=9.1e-32  Score=274.84  Aligned_cols=210  Identities=24%  Similarity=0.354  Sum_probs=162.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||++..  +|+.+|+|++.        +.+.+|++++++++||||+++++++.+. ...++||||+++|+|.+++...
T Consensus        36 g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~  114 (285)
T 3is5_A           36 GDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDY-HNMYIVMETCEGGELLERIVSA  114 (285)
T ss_dssp             CEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECS-SEEEEEECCCSCCBHHHHHHHH
T ss_pred             eEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecC-CeEEEEEEeCCCCcHHHHHHhh
Confidence            58999997  68999999885        3478999999999999999999998754 4789999999999999998643


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceee---CCCCcEEEeecCCCCCCC-------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL---DSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl---d~~~~~kl~DFGla~~~~-------  482 (615)
                      ....      ..+++..+..++.|++.||+|||+++   |+||||||+|||+   +.++.+||+|||+++...       
T Consensus       115 ~~~~------~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~  185 (285)
T 3is5_A          115 QARG------KALSEGYVAELMKQMMNALAYFHSQH---VVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTN  185 (285)
T ss_dssp             HHHT------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEESSSSTTCCEEECCCCCCCC---------
T ss_pred             hhcc------cCCCHHHHHHHHHHHHHHHHHHHhCC---EEECCCCHHHEEEecCCCCCCEEEEeeecceecCCcccCcC
Confidence            2100      13899999999999999999999998   9999999999999   456889999999996532       


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                    ..++.++||||||+++|||++|+.||......+       +..          .. ....+.....
T Consensus       186 ~~~t~~y~aPE~~~~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~-------~~~----------~~-~~~~~~~~~~  247 (285)
T 3is5_A          186 AAGTALYMAPEVFKRDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEE-------VQQ----------KA-TYKEPNYAVE  247 (285)
T ss_dssp             -CTTGGGCCHHHHTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-------HHH----------HH-HHCCCCCCC-
T ss_pred             cccccCcCChHHhccCCCcccCeehHHHHHHHHHhCCCCCCCCCHHH-------HHh----------hh-ccCCcccccc
Confidence                          124568999999999999999999997543111       000          00 0111111111


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       .......+.+++..||+.||++|||+.|+++.
T Consensus       248 -~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h  279 (285)
T 3is5_A          248 -CRPLTPQAVDLLKQMLTKDPERRPSAAQVLHH  279 (285)
T ss_dssp             --CCCCHHHHHHHHHHTCSCTTTSCCHHHHHTS
T ss_pred             -cCcCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence             01123457899999999999999999999863

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.98  E-value=5.7e-32  Score=274.06  Aligned_cols=206  Identities=23%  Similarity=0.331  Sum_probs=164.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||++..  +|+.||||.++        +.+.+|+.++++++|+||+++++++.+. +..++|+||+++|+|.+++...
T Consensus        21 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~   99 (276)
T 2yex_A           21 GEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREG-NIQYLFLEYCSGGELFDRIEPD   99 (276)
T ss_dssp             SEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEET-TEEEEEEECCTTEEGGGGSBTT
T ss_pred             cEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcC-CEEEEEEEecCCCcHHHHHhhc
Confidence            58999998  68999999985        3477899999999999999999998754 4789999999999999999754


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                      .          .+++..+..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||++....          
T Consensus       100 ~----------~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  166 (276)
T 2yex_A          100 I----------GMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK  166 (276)
T ss_dssp             T----------BCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCC
T ss_pred             c----------CCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCChHHEEEccCCCEEEeeCCCccccCCCcchhcccC
Confidence            3          3899999999999999999999998   9999999999999999999999999985321          


Q ss_pred             ---------------CC-CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          483 ---------------ND-VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ---------------~~-~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                     .. .+.++||||||+++|||++|+.||.........  ..   .           +   ......
T Consensus       167 ~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~--~~---~-----------~---~~~~~~  227 (276)
T 2yex_A          167 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQE--YS---D-----------W---KEKKTY  227 (276)
T ss_dssp             CCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHH--HH---H-----------H---HTTCTT
T ss_pred             CccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHH--HH---H-----------h---hhcccc
Confidence                           01 135799999999999999999999765432211  00   0           0   000000


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..........+.+++..||+.||.+|||+.|+++.
T Consensus       228 ~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  262 (276)
T 2yex_A          228 LNPWKKIDSAPLALLHKILVENPSARITIPDIKKD  262 (276)
T ss_dssp             STTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             cCchhhcCHHHHHHHHHHCCCCchhCCCHHHHhcC
Confidence            01112234467899999999999999999999874

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.98  E-value=8e-32  Score=275.71  Aligned_cols=209  Identities=21%  Similarity=0.324  Sum_probs=166.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||+|..  +++.||||.++       +.+.+|+.++++++|+||+++++++.+. +..++||||+++|+|.+++....
T Consensus        36 g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~  114 (295)
T 2clq_A           36 GIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSEN-GFIKIFMEQVPGGSLSALLRSKW  114 (295)
T ss_dssp             SEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEET-TEEEEEEECCSEEEHHHHHHHTT
T ss_pred             EEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeC-CcEEEEEEeCCCCCHHHHHHhhc
Confidence            58999997  68899999874       4578999999999999999999998754 47899999999999999997653


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC-CCcEEEeecCCCCCCCC---------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS-RFKAKIANFSLAAPATN---------  483 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-~~~~kl~DFGla~~~~~---------  483 (615)
                      ..       ..+++..+..++.|++.||.|||+++   ++||||||+||+++. ++.+||+|||+++....         
T Consensus       115 ~~-------~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  184 (295)
T 2clq_A          115 GP-------LKDNEQTIGFYTKQILEGLKYLHDNQ---IVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFT  184 (295)
T ss_dssp             CC-------CTTCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTCCEEECCTTTCEESCC-----CCCC
T ss_pred             cC-------CCccHHHHHHHHHHHHHHHHHHHhCC---EEccCCChhhEEEECCCCCEEEeecccccccCCCCCcccccC
Confidence            21       13779999999999999999999998   999999999999987 89999999999864321         


Q ss_pred             ----------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          484 ----------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       484 ----------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                      .++.++||||||+++|||++|+.||......... ..             . .......+.+  
T Consensus       185 ~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~-~~-------------~-~~~~~~~~~~--  247 (295)
T 2clq_A          185 GTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAA-MF-------------K-VGMFKVHPEI--  247 (295)
T ss_dssp             CCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHH-HH-------------H-HHHHCCCCCC--
T ss_pred             CCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHH-HH-------------h-hccccccccc--
Confidence                            1456899999999999999999999754321110 00             0 0011122333  


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                        +......+.+++.+||+.||++||++.|+++.
T Consensus       248 --~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~~  279 (295)
T 2clq_A          248 --PESMSAEAKAFILKCFEPDPDKRACANDLLVD  279 (295)
T ss_dssp             --CTTSCHHHHHHHHHTTCSSTTTSCCHHHHHTS
T ss_pred             --cccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence              33344567899999999999999999999874

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.98  E-value=8e-32  Score=280.09  Aligned_cols=207  Identities=21%  Similarity=0.309  Sum_probs=165.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||++..  +|+.||||.++             +.+.+|+.++++++||||+++++++.+. +..++||||+++|+|.+
T Consensus        26 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~  104 (321)
T 2a2a_A           26 AIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENR-TDVVLILELVSGGELFD  104 (321)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEEEECCCCSCBHHH
T ss_pred             EEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecC-CEEEEEEEcCCCCcHHH
Confidence            58999998  68999999874             3478999999999999999999998754 47999999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC----cEEEeecCCCCCCC-
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF----KAKIANFSLAAPAT-  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~----~~kl~DFGla~~~~-  482 (615)
                      ++....          .+++..+..++.|++.||+|||+++   |+||||||+|||++.++    .+||+|||+++... 
T Consensus       105 ~l~~~~----------~~~~~~~~~i~~qi~~aL~~lH~~~---ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~  171 (321)
T 2a2a_A          105 FLAQKE----------SLSEEEATSFIKQILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED  171 (321)
T ss_dssp             HHHTCS----------CEEHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCT
T ss_pred             HHHhcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCChHHEEEecCCCCcCCEEEccCccceecCc
Confidence            997643          3899999999999999999999998   99999999999999887    79999999986432 


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                           ..++.++||||||+++|||++|+.||......+   ..   ..           +... 
T Consensus       172 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---~~---~~-----------i~~~-  233 (321)
T 2a2a_A          172 GVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE---TL---AN-----------ITSV-  233 (321)
T ss_dssp             TCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH---HH---HH-----------HHTT-
T ss_pred             cccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHH---HH---HH-----------HHhc-
Confidence                                 124668999999999999999999997543211   11   00           0000 


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ...............+.+++..||+.||++|||+.|++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~h  273 (321)
T 2a2a_A          234 SYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRH  273 (321)
T ss_dssp             CCCCCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHS
T ss_pred             ccccChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            0000000011223457899999999999999999999985

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.98  E-value=1.3e-32  Score=285.04  Aligned_cols=212  Identities=21%  Similarity=0.340  Sum_probs=164.4

Q ss_pred             ceEEEEEECCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||+|...+. +|+|.++         +.+.+|+.++++++|+||+++++++.+. +..++|+||+++|+|.+++....
T Consensus        47 g~V~~~~~~~~-~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~iv~e~~~~~~L~~~l~~~~  124 (319)
T 2y4i_B           47 GQVYHGRWHGE-VAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSP-PHLAIITSLCKGRTLYSVVRDAK  124 (319)
T ss_dssp             SEEEEEEESSS-EEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECS-SCEEEECBCCCSEEHHHHTTSSC
T ss_pred             eEEEEEEEcCe-EEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecC-CceEEEeecccCCcHHHHHHhcC
Confidence            58999998664 8999885         2367899999999999999999998864 47999999999999999997654


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                      .         .+++.++..++.|++.||+|||+++   ++||||||+|||++ ++.+||+|||+++...           
T Consensus       125 ~---------~~~~~~~~~i~~qi~~al~~lH~~~---i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~  191 (319)
T 2y4i_B          125 I---------VLDVNKTRQIAQEIVKGMGYLHAKG---ILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRREDKL  191 (319)
T ss_dssp             C---------CCCSHHHHHHHHHHHHHHHHHHHTT---CCCCCCCSTTEEEC---CCEECCCSCCC----------CCSC
T ss_pred             C---------CCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCChhhEEEe-CCCEEEeecCCcccccccccccccccc
Confidence            2         3889999999999999999999998   99999999999998 6799999999865321           


Q ss_pred             --------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHH
Q 047629          483 --------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREER  536 (615)
Q Consensus       483 --------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  536 (615)
                                                ..++.++||||||+++|||++|+.||.......  . .              ..
T Consensus       192 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~--~-~--------------~~  254 (319)
T 2y4i_B          192 RIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEA--I-I--------------WQ  254 (319)
T ss_dssp             BCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHH--H-H--------------HH
T ss_pred             ccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH--H-H--------------HH
Confidence                                      113557999999999999999999997543211  0 0              01


Q ss_pred             HhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          537 LRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       537 ~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      +.....+.+..   ......+.+++..||+.||++|||+.|+++.|+.+....
T Consensus       255 ~~~~~~~~~~~---~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~  304 (319)
T 2y4i_B          255 MGTGMKPNLSQ---IGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRN  304 (319)
T ss_dssp             HHTTCCCCCCC---SSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC----
T ss_pred             hccCCCCCCCc---CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhh
Confidence            11112222211   112234789999999999999999999999999887664

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.98  E-value=2.1e-31  Score=277.39  Aligned_cols=221  Identities=20%  Similarity=0.288  Sum_probs=166.4

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----HHHHHHHHHHHhcC-CCCcccEEEEEEcC-CCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK----EDVTEELRILQRIN-HANLVKLMGVSSDS-QGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----~~~~~Ei~~l~~l~-H~niv~l~g~~~~~-~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      |.||+|..  +|+.||||.++    +.+.+|++++++++ |+||+++++++.+. ....++||||+++|+|.+++..   
T Consensus        50 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~---  126 (330)
T 3nsz_A           50 SEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQT---  126 (330)
T ss_dssp             EEEEEEEETTTCCEEEEEEECSCCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEECCCCCCHHHHGGG---
T ss_pred             eEEEEEEECCCCcEEEEEEecccchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEeccCchhHHHHHHh---
Confidence            58999987  78999999986    56889999999997 99999999998763 3458999999999999999842   


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC-cEEEeecCCCCCCC-----------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF-KAKIANFSLAAPAT-----------  482 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-~~kl~DFGla~~~~-----------  482 (615)
                                +++.++..++.|++.||+|||+++   |+||||||+|||++.++ .+||+|||+++...           
T Consensus       127 ----------~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  193 (330)
T 3nsz_A          127 ----------LTDYDIRFYMYEILKALDYCHSMG---IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVAS  193 (330)
T ss_dssp             ----------CCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSC
T ss_pred             ----------CCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCcccccccc
Confidence                      788999999999999999999998   99999999999999776 89999999996421           


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHH--HHHhhhcCCc----
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKRE--ERLRNWMDPN----  544 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~dp~----  544 (615)
                                  ..++.++|||||||++|||++|+.|+........ .+ ..+...+.......  .......++.    
T Consensus       194 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~-~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (330)
T 3nsz_A          194 RYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYD-QL-VRIAKVLGTEDLYDYIDKYNIELDPRFNDI  271 (330)
T ss_dssp             GGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHH-HH-HHHHHHHCHHHHHHHHHHTTCCCCTHHHHH
T ss_pred             ccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHH-HH-HHHHHhcCCchhhhHHHHhccccccchhhh
Confidence                        2256789999999999999999999965443211 11 11111111111000  0000001110    


Q ss_pred             ------------CCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          545 ------------LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       545 ------------l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                                  .....+......+.+|+.+||+.||++|||++|++++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~h  320 (330)
T 3nsz_A          272 LGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEH  320 (330)
T ss_dssp             HCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             hhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence                        0111122235578999999999999999999999874

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.98  E-value=1e-31  Score=273.12  Aligned_cols=205  Identities=21%  Similarity=0.389  Sum_probs=161.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||||+++         ..+.+|+..+.++ +||||+++++++.+. +..++||||+++|+|.+++.
T Consensus        25 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~  103 (289)
T 1x8b_A           25 GSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAED-DHMLIQNEYCNGGSLADAIS  103 (289)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEET-TEEEEEEECCTTCBHHHHHH
T ss_pred             eEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecC-CeEEEEEEecCCCcHHHHHH
Confidence            58999998  68999999885         2467899999999 999999999998764 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC-------------------CCcEE
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS-------------------RFKAK  471 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-------------------~~~~k  471 (615)
                      ......      ..+++..+..++.|++.||.|||+++   |+||||||+|||++.                   ...+|
T Consensus       104 ~~~~~~------~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~k  174 (289)
T 1x8b_A          104 ENYRIM------SYFKEAELKDLLLQVGRGLRYIHSMS---LVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFK  174 (289)
T ss_dssp             HHHHHT------CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEC--------------------CCCEE
T ss_pred             hhcccc------cCCCHHHHHHHHHHHHHHHHHHHhCC---EeecCCCHHHEEEcCCCCCcccccccccccccCCceEEE
Confidence            642100      13899999999999999999999998   999999999999984                   45899


Q ss_pred             EeecCCCCCCCC--------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHH
Q 047629          472 IANFSLAAPATN--------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE  531 (615)
Q Consensus       472 l~DFGla~~~~~--------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~  531 (615)
                      |+|||++.....                    ..++++||||||+++|||++|+.++....      .+.          
T Consensus       175 l~Dfg~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~------~~~----------  238 (289)
T 1x8b_A          175 IGDLGHVTRISSPQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGD------QWH----------  238 (289)
T ss_dssp             ECCCTTCEETTCSCCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSH------HHH----------
T ss_pred             EcccccccccCCccccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchh------HHH----------
Confidence            999999865421                    13358999999999999999987764321      011          


Q ss_pred             HHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          532 KREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       532 ~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                          .+.....+.+    +......+.+++.+||+.||++|||+.|++++
T Consensus       239 ----~~~~~~~~~~----~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  280 (289)
T 1x8b_A          239 ----EIRQGRLPRI----PQVLSQEFTELLKVMIHPDPERRPSAMALVKH  280 (289)
T ss_dssp             ----HHHTTCCCCC----SSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred             ----HHHcCCCCCC----CcccCHHHHHHHHHHhCCCcccCCCHHHHhhC
Confidence                1111112222    23334568899999999999999999999875

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.98  E-value=6.7e-32  Score=279.42  Aligned_cols=218  Identities=22%  Similarity=0.312  Sum_probs=163.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||++..  +|+.||||+++       ..+.+|++++.++ +||||+++++++.+. +..++||||+++|+|.+++...
T Consensus        27 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~  105 (316)
T 2ac3_A           27 ARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEE-DRFYLVFEKMRGGSILSHIHKR  105 (316)
T ss_dssp             EEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEET-TEEEEEEECCTTCBHHHHHHHH
T ss_pred             EEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeC-CEEEEEEEcCCCCcHHHHHhcc
Confidence            58999986  78999999984       4578999999995 799999999998764 4799999999999999999764


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCc---EEEeecCCCCCCC-------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSLAAPAT-------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~---~kl~DFGla~~~~-------  482 (615)
                      .          .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.   +||+|||+++...       
T Consensus       106 ~----------~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~  172 (316)
T 2ac3_A          106 R----------HFNELEASVVVQDVASALDFLHNKG---IAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSP  172 (316)
T ss_dssp             S----------SCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEESCSSSSCSEEECCTTCCC----------
T ss_pred             C----------CCCHHHHHHHHHHHHHHHHHHHhCC---ceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCcccc
Confidence            3          3899999999999999999999998   999999999999998766   9999999986431       


Q ss_pred             ----------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHH
Q 047629          483 ----------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKRE  534 (615)
Q Consensus       483 ----------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~  534 (615)
                                                  ..++.++|||||||++|||++|+.||......+..  |.......   ....
T Consensus       173 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~--~~~~~~~~---~~~~  247 (316)
T 2ac3_A          173 ISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCG--WDRGEACP---ACQN  247 (316)
T ss_dssp             ---------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSC--C----CCH---HHHH
T ss_pred             ccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCccccccccc--ccccccch---hHHH
Confidence                                        01356889999999999999999999765422110  00000000   0000


Q ss_pred             HHHhhhcCCcCCCCCCh----HHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          535 ERLRNWMDPNLESFYPI----DGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       535 ~~~~~~~dp~l~~~~~~----~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .....+.....  .++.    .....+.+|+.+||+.||.+|||+.|++++
T Consensus       248 ~~~~~i~~~~~--~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h  296 (316)
T 2ac3_A          248 MLFESIQEGKY--EFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQH  296 (316)
T ss_dssp             HHHHHHHHCCC--CCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHHHHHhccCc--ccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence            00001111111  1121    123468899999999999999999999875

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.98  E-value=6.2e-32  Score=285.18  Aligned_cols=212  Identities=22%  Similarity=0.331  Sum_probs=167.5

Q ss_pred             ccccccccc----ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEE
Q 047629          334 NLSEHYSIG----KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRI-NHANLVKLMGVSSDSQGNRFLV  396 (615)
Q Consensus       334 ~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV  396 (615)
                      +|.....+|    |.||++..  +|+.||||+++..          +..|..++..+ +||||+++++++.+. +..++|
T Consensus        21 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~-~~~~lv   99 (353)
T 2i0e_A           21 DFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTM-DRLYFV   99 (353)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECS-SEEEEE
T ss_pred             HcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcC-CEEEEE
Confidence            344444454    58999998  4789999998743          56799999888 899999999998754 479999


Q ss_pred             EeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecC
Q 047629          397 YEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFS  476 (615)
Q Consensus       397 ~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  476 (615)
                      |||+++|+|.+++....          .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||
T Consensus       100 ~E~~~gg~L~~~l~~~~----------~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~vkL~DFG  166 (353)
T 2i0e_A          100 MEYVNGGDLMYHIQQVG----------RFKEPHAVFYAAEIAIGLFFLQSKG---IIYRDLKLDNVMLDSEGHIKIADFG  166 (353)
T ss_dssp             EECCCSCBHHHHHHHHS----------SCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCT
T ss_pred             EeCCCCCcHHHHHHhcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---EEeccCCHHHEEEcCCCcEEEEeCC
Confidence            99999999999997643          2899999999999999999999998   9999999999999999999999999


Q ss_pred             CCCCCC-----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHH
Q 047629          477 LAAPAT-----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKR  533 (615)
Q Consensus       477 la~~~~-----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~  533 (615)
                      +++...                       ..++.++|||||||++|||++|+.||......   .+.   ..        
T Consensus       167 ~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~---~~~---~~--------  232 (353)
T 2i0e_A          167 MCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED---ELF---QS--------  232 (353)
T ss_dssp             TCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHH---HH--------
T ss_pred             cccccccCCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHH---HHH---HH--------
Confidence            987521                       12456899999999999999999999754321   111   00        


Q ss_pred             HHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCC-----HHHHHHH
Q 047629          534 EERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPN-----MAEVVFN  581 (615)
Q Consensus       534 ~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPs-----m~ev~~~  581 (615)
                         +   +...  ..+|......+.+|+.+|++.||.+||+     ++|++++
T Consensus       233 ---i---~~~~--~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h  277 (353)
T 2i0e_A          233 ---I---MEHN--VAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH  277 (353)
T ss_dssp             ---H---HHCC--CCCCTTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTS
T ss_pred             ---H---HhCC--CCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence               1   1111  1233344556889999999999999995     5777654

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.98  E-value=6.2e-32  Score=291.84  Aligned_cols=216  Identities=20%  Similarity=0.255  Sum_probs=165.9

Q ss_pred             ccccccccc----ceEEEEEE--CCeEEEEEEccH---------------HHHHHHHHHHhcCCCCcccEEEEEEcCCCc
Q 047629          334 NLSEHYSIG----KSVYRATI--DGKVLAVKKIKE---------------DVTEELRILQRINHANLVKLMGVSSDSQGN  392 (615)
Q Consensus       334 ~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~---------------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~  392 (615)
                      .|.....+|    |.||+|..  +|+.||||.+..               .+.+|+++|++++||||+++++++..  +.
T Consensus       136 ~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~--~~  213 (419)
T 3i6u_A          136 EYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA--ED  213 (419)
T ss_dssp             TEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES--SE
T ss_pred             cEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec--Cc
Confidence            344444444    58999987  679999999853               26789999999999999999999753  35


Q ss_pred             EEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC---Cc
Q 047629          393 RFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR---FK  469 (615)
Q Consensus       393 ~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~---~~  469 (615)
                      .++||||+++|+|.+++....          .+++.++..++.|++.||+|||+++   |+||||||+|||++.+   +.
T Consensus       214 ~~lv~e~~~~g~L~~~l~~~~----------~~~~~~~~~i~~qi~~~l~~LH~~~---ivHrDlkp~NIll~~~~~~~~  280 (419)
T 3i6u_A          214 YYIVLELMEGGELFDKVVGNK----------RLKEATCKLYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCL  280 (419)
T ss_dssp             EEEEEECCTTCBGGGGTSSSC----------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESSSSSSCC
T ss_pred             eEEEEEcCCCCcHHHHHhccC----------CCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEecCCCcce
Confidence            899999999999999997654          3899999999999999999999998   9999999999999754   45


Q ss_pred             EEEeecCCCCCCCC-------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHH
Q 047629          470 AKIANFSLAAPATN-------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIR  524 (615)
Q Consensus       470 ~kl~DFGla~~~~~-------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~  524 (615)
                      +||+|||+++....                         .++.++|||||||++|||++|+.||..........  ..+.
T Consensus       281 ~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~--~~i~  358 (419)
T 3i6u_A          281 IKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLK--DQIT  358 (419)
T ss_dssp             EEECCSSTTTSCC-----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHH--HHHH
T ss_pred             EEEeecccceecCCCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHH--HHHh
Confidence            99999999965321                         13357899999999999999999997644322211  0000


Q ss_pred             HHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          525 EVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       525 ~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                                   .....  ............+.+++.+||+.||++||++.|++++
T Consensus       359 -------------~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h  400 (419)
T 3i6u_A          359 -------------SGKYN--FIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRH  400 (419)
T ss_dssp             -------------TTCCC--CCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             -------------cCCCC--CCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence                         00000  0000001223467899999999999999999999875

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.98  E-value=7.9e-32  Score=274.22  Aligned_cols=207  Identities=22%  Similarity=0.344  Sum_probs=165.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||++..  +|+.||+|.++             +.+.+|++++++++||||+++++++.+. ...++||||+++++|.+
T Consensus        19 g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~   97 (283)
T 3bhy_A           19 AIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENK-TDVVLILELVSGGELFD   97 (283)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEEEEECCCSCBHHH
T ss_pred             eEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCC-CeEEEEEeecCCCcHHH
Confidence            58999998  58999999874             3478999999999999999999998764 47899999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC----cEEEeecCCCCCCC-
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF----KAKIANFSLAAPAT-  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~----~~kl~DFGla~~~~-  482 (615)
                      ++....          .+++.++..++.|++.||.|||+++   ++||||||+||+++.++    .+||+|||++.... 
T Consensus        98 ~l~~~~----------~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~  164 (283)
T 3bhy_A           98 FLAEKE----------SLTEDEATQFLKQILDGVHYLHSKR---IAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEA  164 (283)
T ss_dssp             HHHHHS----------SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC-
T ss_pred             HHHhcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCChHHEEEecCCCCCCceEEEecccceeccC
Confidence            997543          3899999999999999999999998   99999999999998877    89999999986431 


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                           ..++.++||||||+++|||++|+.|+......+   ...   .           +.. .
T Consensus       165 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~---~~~---~-----------~~~-~  226 (283)
T 3bhy_A          165 GNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQE---TLT---N-----------ISA-V  226 (283)
T ss_dssp             -------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH---HHH---H-----------HHT-T
T ss_pred             CCcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHH---HHH---H-----------hHh-c
Confidence                                 224568999999999999999999997543211   010   0           000 0


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ...............+.+++.+||+.||.+||++.|+++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h  266 (283)
T 3bhy_A          227 NYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEH  266 (283)
T ss_dssp             CCCCCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHC
T ss_pred             ccCCcchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhC
Confidence            1111000111223457899999999999999999999984

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.98  E-value=1e-31  Score=284.76  Aligned_cols=218  Identities=21%  Similarity=0.326  Sum_probs=168.8

Q ss_pred             ccccccccccc----ceEEEEEE--CCeEEEEEEcc---------------HHHHHHHHHHHhc-CCCCcccEEEEEEcC
Q 047629          332 TMNLSEHYSIG----KSVYRATI--DGKVLAVKKIK---------------EDVTEELRILQRI-NHANLVKLMGVSSDS  389 (615)
Q Consensus       332 t~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~---------------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~  389 (615)
                      ..+|.....+|    |.||++..  +|+.||||+++               +.+.+|+.++.++ +||||+++++++...
T Consensus        93 ~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  172 (365)
T 2y7j_A           93 YQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESS  172 (365)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBS
T ss_pred             hhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeC
Confidence            34455445555    58999998  58999999874               2367899999999 899999999998754


Q ss_pred             CCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCc
Q 047629          390 QGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK  469 (615)
Q Consensus       390 ~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~  469 (615)
                       +..++||||+++|+|.+++....          .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.
T Consensus       173 -~~~~lv~e~~~g~~L~~~l~~~~----------~l~~~~~~~i~~qi~~~L~~LH~~g---i~H~Dlkp~NIl~~~~~~  238 (365)
T 2y7j_A          173 -SFMFLVFDLMRKGELFDYLTEKV----------ALSEKETRSIMRSLLEAVSFLHANN---IVHRDLKPENILLDDNMQ  238 (365)
T ss_dssp             -SEEEEEECCCTTCBHHHHHHHHS----------SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCC
T ss_pred             -CEEEEEEEeCCCCcHHHHHHhcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCC
Confidence             47999999999999999997543          3899999999999999999999998   999999999999999999


Q ss_pred             EEEeecCCCCCCCC----------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHH
Q 047629          470 AKIANFSLAAPATN----------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWK  521 (615)
Q Consensus       470 ~kl~DFGla~~~~~----------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~  521 (615)
                      +||+|||++.....                            .++.++|||||||++|||++|+.||......   ....
T Consensus       239 ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~---~~~~  315 (365)
T 2y7j_A          239 IRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQI---LMLR  315 (365)
T ss_dssp             EEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHH
T ss_pred             EEEEecCcccccCCCcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHH---HHHH
Confidence            99999998854311                            2456899999999999999999999754321   1111


Q ss_pred             HHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          522 EIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+.             .........  ...+....+.+++.+||+.||++|||+.|+++.
T Consensus       316 ~i~-------------~~~~~~~~~--~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h  360 (365)
T 2y7j_A          316 MIM-------------EGQYQFSSP--EWDDRSSTVKDLISRLLQVDPEARLTAEQALQH  360 (365)
T ss_dssp             HHH-------------HTCCCCCHH--HHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHH-------------hCCCCCCCc--ccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            000             000000000  000123457899999999999999999999874

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.97  E-value=6.9e-32  Score=289.69  Aligned_cols=214  Identities=17%  Similarity=0.263  Sum_probs=164.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--HHHHHHHHHHHh-cCCCCcccEEEEEEc---CCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--EDVTEELRILQR-INHANLVKLMGVSSD---SQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--~~~~~Ei~~l~~-l~H~niv~l~g~~~~---~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      |.||++..  +|+.||||+++  ..+.+|++++.+ .+|+||+++++++..   .+...++||||+++|+|.+++.....
T Consensus        76 g~V~~~~~~~~~~~vAiK~~~~~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~  155 (400)
T 1nxk_A           76 GKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGD  155 (400)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHCC--
T ss_pred             eEEEEEEECCCCCEEEEEEeCcchhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEEeCCCCcHHHHHHHhCC
Confidence            58999988  68999999986  467889998855 489999999998753   23358999999999999999986532


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC---CCcEEEeecCCCCCCC---------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS---RFKAKIANFSLAAPAT---------  482 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~---~~~~kl~DFGla~~~~---------  482 (615)
                      .        .+++.++..|+.||+.||.|||+++   |+||||||+|||++.   ++.+||+|||+++...         
T Consensus       156 ~--------~l~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~  224 (400)
T 1nxk_A          156 Q--------AFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPC  224 (400)
T ss_dssp             ---------CCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSTTCCEEECCCTTCEECC---------
T ss_pred             C--------CCCHHHHHHHHHHHHHHHHHHHHCC---ccccCcCcceEEEecCCCCccEEEEecccccccCCCCccccCC
Confidence            1        3899999999999999999999998   999999999999998   7899999999986432         


Q ss_pred             -------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhH-HHHHHHHHHHhHHHHHHHHHhhhcCCcCCCC
Q 047629          483 -------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTA-VLWKEIREVLKVEEKREERLRNWMDPNLESF  548 (615)
Q Consensus       483 -------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~  548 (615)
                                   ..++.++|||||||++|||++|+.||......... .....+            .... .+  +...
T Consensus       225 gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i------------~~~~-~~--~~~~  289 (400)
T 1nxk_A          225 YTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRI------------RMGQ-YE--FPNP  289 (400)
T ss_dssp             --CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHH------------HHTC-CC--CCTT
T ss_pred             CCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHH------------HcCc-cc--CCCc
Confidence                         22567899999999999999999999764422110 000000            0001 10  1111


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       549 ~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      ........+.+|+..||+.||++|||+.|++++-
T Consensus       290 ~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp  323 (400)
T 1nxk_A          290 EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHP  323 (400)
T ss_dssp             TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSH
T ss_pred             ccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCc
Confidence            1122345678999999999999999999999864

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.97  E-value=6.8e-32  Score=281.81  Aligned_cols=222  Identities=23%  Similarity=0.370  Sum_probs=167.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.||++..  +|+.||||++.         +.+.+|++++++++|+||+++++++.+. +..++||||+++++|.+++..
T Consensus        39 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~l~~~~~~  117 (331)
T 4aaa_A           39 GMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKK-KRWYLVFEFVDHTILDDLELF  117 (331)
T ss_dssp             SSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-TEEEEEEECCSEEHHHHHHHS
T ss_pred             EEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecC-CEEEEEEecCCcchHHHHHhh
Confidence            58999998  58999999873         2367899999999999999999998754 478999999999999988765


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------  482 (615)
                      ..          .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...         
T Consensus       118 ~~----------~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~  184 (331)
T 4aaa_A          118 PN----------GLDYQVVQKYLFQIINGIGFCHSHN---IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDE  184 (331)
T ss_dssp             TT----------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCTTC------------C
T ss_pred             cc----------CCCHHHHHHHHHHHHHHHHHHHHCC---EEccCcChheEEEcCCCcEEEEeCCCceeecCCccccCCC
Confidence            43          2899999999999999999999998   9999999999999999999999999985421         


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhH-HHH------HHHHHhhh
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV-EEK------REERLRNW  540 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~-~~~------~~~~~~~~  540 (615)
                                     ..++.++||||||+++|||++|+.||......+..  .. +...... ...      ........
T Consensus       185 ~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~  261 (331)
T 4aaa_A          185 VATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQL--YH-IMMCLGNLIPRHQELFNKNPVFAGV  261 (331)
T ss_dssp             CCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH--HH-HHHHHCSCCHHHHHHHHHCGGGTTC
T ss_pred             cCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHH--HH-HHHHhCCCChhhhhHhhhccccccc
Confidence                           12467899999999999999999999765432211  11 1111000 000      00111112


Q ss_pred             cCCcCCCCCCh-----HHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          541 MDPNLESFYPI-----DGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       541 ~dp~l~~~~~~-----~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..+.+....+.     .....+.+|+.+||+.||++|||+.|+++.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h  307 (331)
T 4aaa_A          262 RLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHH  307 (331)
T ss_dssp             CCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             cCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence            22222222221     234568999999999999999999999885

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.97  E-value=3.4e-32  Score=283.46  Aligned_cols=213  Identities=22%  Similarity=0.324  Sum_probs=163.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcC-CCCcccEEEEEEc-------CCCcEEEEEeecCCCCH
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRIN-HANLVKLMGVSSD-------SQGNRFLVYEYAENGSL  405 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~-H~niv~l~g~~~~-------~~~~~~lV~E~~~~GsL  405 (615)
                      |.||++..  +|+.||||++.       ..+.+|+.++.++. |+||+++++++..       .....++|+||+. |+|
T Consensus        42 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~-g~L  120 (337)
T 3ll6_A           42 AFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCK-GQL  120 (337)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSEEEEEEEECCS-EEH
T ss_pred             eEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCceEEEEEEecC-CCH
Confidence            48999998  78999999883       35778999999995 9999999999842       2234799999996 799


Q ss_pred             HHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---
Q 047629          406 DKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---  482 (615)
Q Consensus       406 ~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---  482 (615)
                      .+++......       ..+++.+++.++.|++.||.|||+++ ++|+||||||+|||++.++.+||+|||+++...   
T Consensus       121 ~~~l~~~~~~-------~~~~~~~~~~i~~qi~~~l~~LH~~~-~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~  192 (337)
T 3ll6_A          121 VEFLKKMESR-------GPLSCDTVLKIFYQTCRAVQHMHRQK-PPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYP  192 (337)
T ss_dssp             HHHHHHHHTT-------CSCCHHHHHHHHHHHHHHHHHHHTSS-SCCBCCCCCGGGCEECTTSCEEBCCCTTCBCCSSCC
T ss_pred             HHHHHHhhcc-------CCCCHHHHHHHHHHHHHHHHHHHhCC-CCEEEccCCcccEEECCCCCEEEecCccceeccccC
Confidence            9998652211       13899999999999999999999874 459999999999999999999999999986431   


Q ss_pred             -----------------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHH
Q 047629          483 -----------------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVL  527 (615)
Q Consensus       483 -----------------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~  527 (615)
                                                         ..++.++||||||+++|||++|+.||.......            
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~------------  260 (337)
T 3ll6_A          193 DYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLR------------  260 (337)
T ss_dssp             -------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-------------------
T ss_pred             cccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHH------------
Confidence                                               113458999999999999999999986432100            


Q ss_pred             hHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          528 KVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       528 ~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                              .+...........    ....+.+++..||+.||.+||++.|+++.|+.+...
T Consensus       261 --------~~~~~~~~~~~~~----~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~  309 (337)
T 3ll6_A          261 --------IVNGKYSIPPHDT----QYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAA  309 (337)
T ss_dssp             -------------CCCCTTCC----SSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             --------hhcCcccCCcccc----cchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence                    0001111111111    223368999999999999999999999999988654

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.97  E-value=3.4e-32  Score=287.39  Aligned_cols=226  Identities=20%  Similarity=0.346  Sum_probs=167.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||++..  +|+.||+|.++        ..+.+|+.++++++|+||+++++++.+. +..++||||+++|+|.+++...
T Consensus        47 g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~  125 (360)
T 3eqc_A           47 GVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD-GEISICMEHMDGGSLDQVLKKA  125 (360)
T ss_dssp             CEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEET-TEEEEEECCCTTCBHHHHHHHH
T ss_pred             eEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEEC-CEEEEEEECCCCCCHHHHHHHc
Confidence            58999998  58999999985        3477899999999999999999998764 4799999999999999999764


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhC-CCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH-AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA----------  481 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~----------  481 (615)
                      .          .+++..+..++.|++.||.|||+. +   |+||||||+|||++.++.+||+|||+++..          
T Consensus       126 ~----------~~~~~~~~~i~~~i~~~l~~lh~~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~g  192 (360)
T 3eqc_A          126 G----------RIPEQILGKVSIAVIKGLTYLREKHK---IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVG  192 (360)
T ss_dssp             S----------SCCHHHHHHHHHHHHHHHHHHHHHHC---CCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHC----CC
T ss_pred             C----------CCCHHHHHHHHHHHHHHHHHHHHhCC---EEcCCccHHHEEECCCCCEEEEECCCCcccccccccCCCC
Confidence            3          289999999999999999999985 6   999999999999999999999999998421          


Q ss_pred             -----------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHH-HHHH-----------------HhHHH-
Q 047629          482 -----------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKE-IREV-----------------LKVEE-  531 (615)
Q Consensus       482 -----------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~-~~~~-----------------~~~~~-  531 (615)
                                 ...++.++||||||+++|||++|+.||......+....... ....                 ..... 
T Consensus       193 t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (360)
T 3eqc_A          193 TRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSR  272 (360)
T ss_dssp             CCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC-----------------------------
T ss_pred             CCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcccccccCCC
Confidence                       12356789999999999999999999976442211110000 0000                 00000 


Q ss_pred             ---HHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          532 ---KREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       532 ---~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                         .....+...................+.+|+.+||+.||++|||++|++++-
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp  326 (360)
T 3eqc_A          273 PPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHA  326 (360)
T ss_dssp             -CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSH
T ss_pred             CcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhCh
Confidence               000000111111111111112344688999999999999999999999853

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.97  E-value=6e-32  Score=276.89  Aligned_cols=209  Identities=12%  Similarity=0.105  Sum_probs=165.4

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||+|..  +|+.||||.++          +.+.+|+.++.+++|+||+++++++.+. +..++||||+++|+|.+++.
T Consensus        45 g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~-~~~~lv~e~~~g~~L~~~l~  123 (286)
T 3uqc_A           45 LQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTR-AGGLVVAEWIRGGSLQEVAD  123 (286)
T ss_dssp             CEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEET-TEEEEEEECCCEEEHHHHHT
T ss_pred             eEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEEC-CcEEEEEEecCCCCHHHHHh
Confidence            58999998  48999999985          3478899999999999999999998764 47999999999999999995


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCCCCCccc
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFD  490 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~k~D  490 (615)
                      ..            ....+..+++.|++.||+|||+++   |+||||||+|||++.++.+||+++|...    ..+.++|
T Consensus       124 ~~------------~~~~~~~~i~~ql~~aL~~lH~~g---ivH~Dikp~NIll~~~g~~kl~~~~~~~----~~~~~~D  184 (286)
T 3uqc_A          124 TS------------PSPVGAIRAMQSLAAAADAAHRAG---VALSIDHPSRVRVSIDGDVVLAYPATMP----DANPQDD  184 (286)
T ss_dssp             TC------------CCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEEETTSCEEECSCCCCT----TCCHHHH
T ss_pred             cC------------CChHHHHHHHHHHHHHHHHHHHCC---CccCCCCcccEEEcCCCCEEEEeccccC----CCCchhH
Confidence            42            344568889999999999999998   9999999999999999999999887643    4788999


Q ss_pred             chhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC--CCCCChHHHHHHHHHHHHhhhcC
Q 047629          491 VFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL--ESFYPIDGALSLATLARACTMDK  568 (615)
Q Consensus       491 V~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l--~~~~~~~~~~~l~~l~~~C~~~d  568 (615)
                      ||||||++|||++|+.||......+....                 ....+....  ......+....+.+++.+||+.|
T Consensus       185 i~slG~il~elltg~~Pf~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d  247 (286)
T 3uqc_A          185 IRGIGASLYALLVNRWPLPEAGVRSGLAP-----------------AERDTAGQPIEPADIDRDIPFQISAVAARSVQGD  247 (286)
T ss_dssp             HHHHHHHHHHHHHSEECSCCCSBCCCSEE-----------------CCBCTTSCBCCHHHHCTTSCHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHCCCCCCcCCcchhhHH-----------------HHHHhccCCCChhhcccCCCHHHHHHHHHHcccC
Confidence            99999999999999999976543211000                 000000000  00011223345889999999999


Q ss_pred             CCCCCCHHHHHHHHHhcccch
Q 047629          569 SLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       569 P~~RPsm~ev~~~L~~l~~~~  589 (615)
                      |++| |+.|+++.|+.+....
T Consensus       248 P~~R-s~~el~~~L~~~~~~~  267 (286)
T 3uqc_A          248 GGIR-SASTLLNLMQQATAVA  267 (286)
T ss_dssp             SSCC-CHHHHHHHHHHHHC--
T ss_pred             CccC-CHHHHHHHHHHHhccC
Confidence            9999 9999999999887654

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.97  E-value=1.9e-32  Score=283.46  Aligned_cols=212  Identities=22%  Similarity=0.318  Sum_probs=161.7

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCC---cEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQG---NRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~---~~~lV~E~~~~GsL~~  407 (615)
                      |.||++..  +|+.||||+++.          .+.+|++++.+++||||+++++++.....   ..++||||+++|+|.+
T Consensus        26 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~lv~e~~~g~~L~~  105 (311)
T 3ork_A           26 SEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRD  105 (311)
T ss_dssp             EEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEEEEEEECCCEEEHHH
T ss_pred             EEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcccEEEEecCCCCCHHH
Confidence            58999996  789999999852          46789999999999999999998764332   2499999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++....          .+++.+++.++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...     
T Consensus       106 ~l~~~~----------~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~  172 (311)
T 3ork_A          106 IVHTEG----------PMTPKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNS  172 (311)
T ss_dssp             HHHHHC----------SCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEETTSCEEECCCSCC---------
T ss_pred             HHHhcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---CCcCCCCHHHEEEcCCCCEEEeeccCcccccccccc
Confidence            997643          3899999999999999999999998   9999999999999999999999999986431     


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                           ..++.++||||||+++|||++|+.||......+  ....              ......
T Consensus       173 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~--~~~~--------------~~~~~~  236 (311)
T 3ork_A          173 VTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVS--VAYQ--------------HVREDP  236 (311)
T ss_dssp             ---------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH--HHHH--------------HHHCCC
T ss_pred             cccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHH--HHHH--------------HhcCCC
Confidence                                 124568999999999999999999997543211  1000              001000


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH-HHHhc
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVF-NLSVL  585 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~-~L~~l  585 (615)
                      .+.  ..........+.+++.+||+.||++||++.+++. .|..+
T Consensus       237 ~~~--~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~  279 (311)
T 3ork_A          237 IPP--SARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRV  279 (311)
T ss_dssp             CCH--HHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred             CCc--ccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHH
Confidence            000  0001123345789999999999999997666554 45444

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.97  E-value=1.1e-31  Score=294.37  Aligned_cols=219  Identities=18%  Similarity=0.233  Sum_probs=166.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-----HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-----EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-----~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      |.||+|..  +|+.||||.++     .++..|++++..++|.+.+..+.++.......+|||||+ +|+|.+++..... 
T Consensus        21 G~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~-g~sL~~ll~~~~~-   98 (483)
T 3sv0_A           21 GEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLL-GPSLEDLFNFCSR-   98 (483)
T ss_dssp             CEEEEEEETTTCCEEEEEEEETTCSSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTT-
T ss_pred             EEEEEEEECCCCcEEEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECC-CCCHHHHHHhhcC-
Confidence            58999997  68999999875     358899999999987555544444433445789999999 8999999975433 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceee---CCCCcEEEeecCCCCCCCC---------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL---DSRFKAKIANFSLAAPATN---------  483 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl---d~~~~~kl~DFGla~~~~~---------  483 (615)
                              .+++.+++.|+.||+.||+|||+++   |+||||||+|||+   +.++.+||+|||+++....         
T Consensus        99 --------~l~~~~~~~i~~qi~~aL~yLH~~g---IvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~  167 (483)
T 3sv0_A           99 --------KLSLKTVLMLADQMINRVEFVHSKS---FLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPY  167 (483)
T ss_dssp             --------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCC
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHCC---EeecccCcceEEEecCCCCCeEEEEeCCcceeccCCcccccccc
Confidence                    3899999999999999999999998   9999999999999   6889999999999864311         


Q ss_pred             ---------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          484 ---------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       484 ---------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                           .++.++|||||||+||||++|+.||..............+...         .+...++
T Consensus       168 ~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~---------~~~~~~~  238 (483)
T 3sv0_A          168 RENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEK---------KVATSIE  238 (483)
T ss_dssp             CCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHH---------HHHSCHH
T ss_pred             ccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhc---------cccccHH
Confidence                                 1345789999999999999999999876543332222211111         1110000


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                       .+...+    ..++.+++..||+.||++||++.+|++.|+.+...
T Consensus       239 -~l~~~~----p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~  279 (483)
T 3sv0_A          239 -ALCRGY----PTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIR  279 (483)
T ss_dssp             -HHHTTS----CHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             -HHhcCC----cHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHH
Confidence             000122    34579999999999999999999999999887553

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.97  E-value=8.8e-32  Score=306.21  Aligned_cols=211  Identities=24%  Similarity=0.377  Sum_probs=171.0

Q ss_pred             ceEEEEEEC-----CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATID-----GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~~-----g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|.+.     +..||||+++        +.+.+|+.+|++++||||++++|++.+  +..++||||+++|+|.+++
T Consensus       404 G~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~--~~~~lv~E~~~~g~L~~~l  481 (656)
T 2j0j_A          404 GDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE--NPVWIIMELCTLGELRSFL  481 (656)
T ss_dssp             CCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS--SSCEEEEECCTTCBHHHHH
T ss_pred             EEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec--CceEEEEEcCCCCcHHHHH
Confidence            589999872     4679999875        457889999999999999999999843  4689999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------  483 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------  483 (615)
                      .....         .+++..++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++....      
T Consensus       482 ~~~~~---------~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~~~~~  549 (656)
T 2j0j_A          482 QVRKF---------SLDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKA  549 (656)
T ss_dssp             HHTTT---------TCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCCCCCSCCC------
T ss_pred             HhccC---------CCCHHHHHHHHHHHHHHHHHHHhCC---ccccccchHhEEEeCCCCEEEEecCCCeecCCCcceec
Confidence            76542         3899999999999999999999998   99999999999999999999999999975421      


Q ss_pred             ------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCc
Q 047629          484 ------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPN  544 (615)
Q Consensus       484 ------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~  544 (615)
                                        .++.++|||||||++|||++ |+.||......+   ...              .+.....+ 
T Consensus       550 ~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~---~~~--------------~i~~~~~~-  611 (656)
T 2j0j_A          550 SKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND---VIG--------------RIENGERL-  611 (656)
T ss_dssp             ----CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH---HHH--------------HHHHTCCC-
T ss_pred             cCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHH---HHH--------------HHHcCCCC-
Confidence                              13557999999999999997 999987543211   110              11111111 


Q ss_pred             CCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          545 LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       545 l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                         ..+......+.+++..||+.||.+||++.|+++.|+.+.+.
T Consensus       612 ---~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~  652 (656)
T 2j0j_A          612 ---PMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE  652 (656)
T ss_dssp             ---CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ---CCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence               12334445689999999999999999999999999987643

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.97  E-value=1.1e-31  Score=274.99  Aligned_cols=204  Identities=23%  Similarity=0.351  Sum_probs=165.5

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.+|+|.+.          +.+.+|+.++++++|+||+++++++.+. +..++||||+++|+|.+++.
T Consensus        29 g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~  107 (294)
T 2rku_A           29 AKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDN-DFVFVVLELCRRRSLLELHK  107 (294)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECS-SEEEEEEECCTTCBHHHHHH
T ss_pred             EEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccC-CEEEEEEecCCCCCHHHHHH
Confidence            48999998  58899999874          2467899999999999999999998754 47899999999999999987


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ...          .+++.++..++.|++.||+|||+++   ++||||||+||+++.++.+||+|||+++...        
T Consensus       108 ~~~----------~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~  174 (294)
T 2rku_A          108 RRK----------ALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKV  174 (294)
T ss_dssp             HHC----------SCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCC
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEcCCCCEEEEeccCceecccCcccccc
Confidence            643          3899999999999999999999998   9999999999999999999999999986431        


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ...+.++||||||+++|||++|+.|+......+.   +   .           .+.. ....   
T Consensus       175 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~---~---~-----------~~~~-~~~~---  233 (294)
T 2rku_A          175 LCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKET---Y---L-----------RIKK-NEYS---  233 (294)
T ss_dssp             CCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH---H---H-----------HHHT-TCCC---
T ss_pred             ccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH---H---H-----------HHhh-ccCC---
Confidence                           1145689999999999999999999975432110   0   0           0000 0111   


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                       .+......+.+++.+||+.||++|||+.|+++.-
T Consensus       234 -~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~~  267 (294)
T 2rku_A          234 -IPKHINPVAASLIQKMLQTDPTARPTINELLNDE  267 (294)
T ss_dssp             -CCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSH
T ss_pred             -CccccCHHHHHHHHHHcccChhhCcCHHHHhhCh
Confidence             2233345678999999999999999999998853

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=7.1e-32  Score=288.18  Aligned_cols=221  Identities=23%  Similarity=0.370  Sum_probs=163.3

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcC-CCCcccEEEEEEcCC-CcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRIN-HANLVKLMGVSSDSQ-GNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~-H~niv~l~g~~~~~~-~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|..  +|+.||||++.         ..+.+|+.++.++. |+||+++++++...+ ...++||||++ |+|.+++
T Consensus        23 g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~lv~e~~~-~~L~~~~  101 (388)
T 3oz6_A           23 GIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVYLVFDYME-TDLHAVI  101 (388)
T ss_dssp             -CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEEEEEECCS-EEHHHHH
T ss_pred             eEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEEEEecccC-cCHHHHH
Confidence            58999987  68999999884         23568999999997 999999999987543 35899999997 6999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      ...           .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...       
T Consensus       102 ~~~-----------~~~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~  167 (388)
T 3oz6_A          102 RAN-----------ILEPVHKQYVVYQLIKVIKYLHSGG---LLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTN  167 (388)
T ss_dssp             HHT-----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEESSSCCCCCC
T ss_pred             HcC-----------CCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCCCHHHeEEcCCCCEEecCCcccccccccccccc
Confidence            753           2889999999999999999999998   9999999999999999999999999986321       


Q ss_pred             --------------------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHH
Q 047629          483 --------------------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIR  524 (615)
Q Consensus       483 --------------------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~  524 (615)
                                                            ..++.++|||||||++|||++|+.||......+.   ...+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~---~~~i~  244 (388)
T 3oz6_A          168 NIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQ---LERII  244 (388)
T ss_dssp             CGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH---HHHHH
T ss_pred             cccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHH
Confidence                                                  2256789999999999999999999976542211   11111


Q ss_pred             HHHhHHHHH-------------HHHHhhhc---CCcCCCCC------------ChHHHHHHHHHHHHhhhcCCCCCCCHH
Q 047629          525 EVLKVEEKR-------------EERLRNWM---DPNLESFY------------PIDGALSLATLARACTMDKSLSRPNMA  576 (615)
Q Consensus       525 ~~~~~~~~~-------------~~~~~~~~---dp~l~~~~------------~~~~~~~l~~l~~~C~~~dP~~RPsm~  576 (615)
                      ..+......             ...+....   .......+            +......+.+|+.+||+.||++|||+.
T Consensus       245 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t~~  324 (388)
T 3oz6_A          245 GVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRISAN  324 (388)
T ss_dssp             HHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSCCHH
T ss_pred             HhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcccCCCHH
Confidence            111000000             00000000   00000000            012234578999999999999999999


Q ss_pred             HHHHH
Q 047629          577 EVVFN  581 (615)
Q Consensus       577 ev~~~  581 (615)
                      |++++
T Consensus       325 e~l~H  329 (388)
T 3oz6_A          325 DALKH  329 (388)
T ss_dssp             HHTTS
T ss_pred             HHhCC
Confidence            99886

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.97  E-value=1.5e-31  Score=277.95  Aligned_cols=207  Identities=22%  Similarity=0.278  Sum_probs=162.9

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCH
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSL  405 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL  405 (615)
                      |.||++..  +|+.||||.+..               .+.+|+++|++++||||+++++++.. + ..++||||+++|+|
T Consensus        24 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~-~~~lv~e~~~~~~L  101 (322)
T 2ycf_A           24 GEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA-E-DYYIVLELMEGGEL  101 (322)
T ss_dssp             EEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEES-S-SEEEEEECCTTEET
T ss_pred             EEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcC-C-ceEEEEecCCCCcH
Confidence            58999987  689999998742               26789999999999999999999864 3 58999999999999


Q ss_pred             HHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCc---EEEeecCCCCCCC
Q 047629          406 DKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSLAAPAT  482 (615)
Q Consensus       406 ~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~---~kl~DFGla~~~~  482 (615)
                      .+++....          .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.   +||+|||+++...
T Consensus       102 ~~~~~~~~----------~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~  168 (322)
T 2ycf_A          102 FDKVVGNK----------RLKEATCKLYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILG  168 (322)
T ss_dssp             HHHHSTTC----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSSSCCEEECCCTTCEECC
T ss_pred             HHHHhccC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEEecCCCCCeEEEccCccceecc
Confidence            99997643          3899999999999999999999998   999999999999987654   9999999986432


Q ss_pred             -------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHH
Q 047629          483 -------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERL  537 (615)
Q Consensus       483 -------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  537 (615)
                                               ..++.++||||||+++|||++|+.||.........  ...+.         ....
T Consensus       169 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~--~~~~~---------~~~~  237 (322)
T 2ycf_A          169 ETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSL--KDQIT---------SGKY  237 (322)
T ss_dssp             CCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCH--HHHHH---------HTCC
T ss_pred             cccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHH--HHHHH---------hCcc
Confidence                                     22467899999999999999999999765432211  11010         0000


Q ss_pred             hhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          538 RNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       538 ~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                        ...+..    ..+....+.+++.+||+.||++||++.|+++.
T Consensus       238 --~~~~~~----~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~h  275 (322)
T 2ycf_A          238 --NFIPEV----WAEVSEKALDLVKKLLVVDPKARFTTEEALRH  275 (322)
T ss_dssp             --CCCHHH----HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             --ccCchh----hhhcCHHHHHHHHHHcccCHhhCCCHHHHhhC
Confidence              000000    01223467899999999999999999999874

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.97  E-value=2.2e-31  Score=296.17  Aligned_cols=218  Identities=20%  Similarity=0.262  Sum_probs=172.4

Q ss_pred             ccccccccc----ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEE
Q 047629          334 NLSEHYSIG----KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVY  397 (615)
Q Consensus       334 ~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~  397 (615)
                      +|.....+|    |.||++..  +|+.||||+++.          .+.+|+++|.+++||||+++++++.+. +..++||
T Consensus       185 ~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~-~~l~lVm  263 (576)
T 2acx_A          185 TFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETK-DALCLVL  263 (576)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEEEE
T ss_pred             ceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeC-CEEEEEE
Confidence            344444555    58999998  689999999853          256899999999999999999998754 4799999


Q ss_pred             eecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCC
Q 047629          398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSL  477 (615)
Q Consensus       398 E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  477 (615)
                      ||+++|+|.+++......        .+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+
T Consensus       264 Ey~~gg~L~~~l~~~~~~--------~l~e~~~~~i~~qIl~aL~yLH~~g---IvHrDLKPeNILld~~g~vKL~DFGl  332 (576)
T 2acx_A          264 TLMNGGDLKFHIYHMGQA--------GFPEARAVFYAAEICCGLEDLHRER---IVYRDLKPENILLDDHGHIRISDLGL  332 (576)
T ss_dssp             CCCCSCBHHHHHHSSSSC--------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCTT
T ss_pred             EcCCCCcHHHHHHhcCCC--------CCCHHHHHHHHHHHHHHHHHHHHCC---EeccCCchheEEEeCCCCeEEEeccc
Confidence            999999999999765421        3899999999999999999999998   99999999999999999999999999


Q ss_pred             CCCCCC----------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHH
Q 047629          478 AAPATN----------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREE  535 (615)
Q Consensus       478 a~~~~~----------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~  535 (615)
                      ++....                      .++.++|||||||++|||++|+.||...........   +..          
T Consensus       333 a~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~---i~~----------  399 (576)
T 2acx_A          333 AVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREE---VER----------  399 (576)
T ss_dssp             CEECCTTCCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHH---HHH----------
T ss_pred             ceecccCccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHH---HHH----------
Confidence            965321                      245689999999999999999999986543221110   110          


Q ss_pred             HHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHHH
Q 047629          536 RLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRP-----NMAEVVFN  581 (615)
Q Consensus       536 ~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~~  581 (615)
                      .+.. ..    ..++......+.+|+..|++.||.+||     +++||+++
T Consensus       400 ~i~~-~~----~~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~H  445 (576)
T 2acx_A          400 LVKE-VP----EEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEH  445 (576)
T ss_dssp             HHHH-CC----CCCCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTS
T ss_pred             Hhhc-cc----ccCCccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhC
Confidence            0111 11    123333445688999999999999999     78888765

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.97  E-value=4.3e-31  Score=277.90  Aligned_cols=221  Identities=23%  Similarity=0.331  Sum_probs=163.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcC-------CCcEEEEEeecCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDS-------QGNRFLVYEYAENGS  404 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~-------~~~~~lV~E~~~~Gs  404 (615)
                      |.||++..  +|+.||||++.         ..+.+|++++++++|+||+++++++...       .+..++||||+++ +
T Consensus        31 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~  109 (351)
T 3mi9_A           31 GEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-D  109 (351)
T ss_dssp             TSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------CEEEEEEECCSE-E
T ss_pred             cEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCCceEEEEEeccCC-C
Confidence            58999998  68999999874         3577999999999999999999998753       2357999999984 8


Q ss_pred             HHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--
Q 047629          405 LDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--  482 (615)
Q Consensus       405 L~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--  482 (615)
                      |.+.+.....         .+++.++..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...  
T Consensus       110 l~~~l~~~~~---------~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~  177 (351)
T 3mi9_A          110 LAGLLSNVLV---------KFTLSEIKRVMQMLLNGLYYIHRNK---ILHRDMKAANVLITRDGVLKLADFGLARAFSLA  177 (351)
T ss_dssp             HHHHHHCTTS---------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECCCC
T ss_pred             HHHHHhhccC---------CCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCHHHEEEcCCCCEEEccchhccccccc
Confidence            8887765433         3899999999999999999999998   9999999999999999999999999985321  


Q ss_pred             --------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHH
Q 047629          483 --------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREER  536 (615)
Q Consensus       483 --------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  536 (615)
                                                ..++.++|||||||++|||++|+.||.........   ..+........  ...
T Consensus       178 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~---~~i~~~~~~~~--~~~  252 (351)
T 3mi9_A          178 KNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQL---ALISQLCGSIT--PEV  252 (351)
T ss_dssp             SSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH---HHHHHHHCCCC--TTT
T ss_pred             ccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHH---HHHHHHhCCCC--hhh
Confidence                                      12467899999999999999999999764422211   11111100000  000


Q ss_pred             Hhhh--------cCCcCCCCCCh-H------HHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          537 LRNW--------MDPNLESFYPI-D------GALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       537 ~~~~--------~dp~l~~~~~~-~------~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ....        +.......... +      ....+.+|+.+|++.||++|||++|+++.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  312 (351)
T 3mi9_A          253 WPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  312 (351)
T ss_dssp             STTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             ccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCC
Confidence            0000        00000000000 0      02347899999999999999999999986

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.97  E-value=1.1e-31  Score=272.18  Aligned_cols=203  Identities=26%  Similarity=0.403  Sum_probs=164.8

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||+|..  +|+.||||.++.          .+.+|+.++++++|+||+++++++.+. +..++||||+++|+|.+++.
T Consensus        25 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~  103 (276)
T 2h6d_A           25 GKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTP-TDFFMVMEYVSGGELFDYIC  103 (276)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECS-SEEEEEEECCCSCBHHHHHH
T ss_pred             eEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecC-CeEEEEEeccCCCcHHHHHh
Confidence            58999997  689999999853          366899999999999999999998754 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND------  484 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~------  484 (615)
                      ...          .+++..+..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||++......      
T Consensus       104 ~~~----------~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~  170 (276)
T 2h6d_A          104 KHG----------RVEEMEARRLFQQILSAVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTS  170 (276)
T ss_dssp             HHC----------SCCHHHHHHHHHHHHHHHHHHHHHC---SSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-------
T ss_pred             ccC----------CCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCChhhEEECCCCCEEEeecccccccCCCcceecc
Confidence            643          2899999999999999999999998   999999999999999999999999998653211      


Q ss_pred             -----------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          485 -----------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       485 -----------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                       .+.++||||||+++|||++|+.|+.....   .....              .+... ...   
T Consensus       171 ~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~---~~~~~--------------~~~~~-~~~---  229 (276)
T 2h6d_A          171 CGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHV---PTLFK--------------KIRGG-VFY---  229 (276)
T ss_dssp             ------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHH--------------HHHHC-CCC---
T ss_pred             cCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcH---HHHHH--------------HhhcC-ccc---
Confidence                             13579999999999999999999965431   11111              01110 011   


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       .+......+.+++.+|++.||.+|||+.|+++.
T Consensus       230 -~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h  262 (276)
T 2h6d_A          230 -IPEYLNRSVATLLMHMLQVDPLKRATIKDIREH  262 (276)
T ss_dssp             -CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             -CchhcCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence             222334568899999999999999999999985

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.97  E-value=5.7e-33  Score=295.59  Aligned_cols=206  Identities=19%  Similarity=0.198  Sum_probs=156.7

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------HHHHHHH---HHHHhcCCCCcccEE-------EEEEcCCC---------
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------EDVTEEL---RILQRINHANLVKLM-------GVSSDSQG---------  391 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei---~~l~~l~H~niv~l~-------g~~~~~~~---------  391 (615)
                      |.||+|..  +|+.||||+++          +.+.+|+   ++|++++|||||+++       +++.+.+.         
T Consensus        87 g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (377)
T 3byv_A           87 YAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLD  166 (377)
T ss_dssp             EEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEECTTSCSEEEC---
T ss_pred             EEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhhccCCccccccccC
Confidence            58999996  69999999985          4577899   455566899999998       66554321         


Q ss_pred             -------cEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceee
Q 047629          392 -------NRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL  464 (615)
Q Consensus       392 -------~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl  464 (615)
                             ..++||||+ +|+|.+++.......   .....++|..++.|+.|++.||+|||+++   |+||||||+|||+
T Consensus       167 ~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~---~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivHrDikp~NIll  239 (377)
T 3byv_A          167 ERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHS---STHKSLVHHARLQLTLQVIRLLASLHHYG---LVHTYLRPVDIVL  239 (377)
T ss_dssp             ---CEEESEEEEEECC-SEEHHHHHHHHHHTT---TTTHHHHHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEE
T ss_pred             CCceEEEEEEEEEecc-CCCHHHHHHhccccc---cccccccHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEE
Confidence                   278999999 689999997642210   00123668999999999999999999998   9999999999999


Q ss_pred             CCCCcEEEeecCCCCCCCC------------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCC
Q 047629          465 DSRFKAKIANFSLAAPATN------------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENG  514 (615)
Q Consensus       465 d~~~~~kl~DFGla~~~~~------------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~  514 (615)
                      +.++.+||+|||+++....                              .++.++|||||||++|||++|+.||......
T Consensus       240 ~~~~~~kL~DFG~a~~~~~~~~~~~g~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~  319 (377)
T 3byv_A          240 DQRGGVFLTGFEHLVRDGARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAAL  319 (377)
T ss_dssp             CTTCCEEECCGGGCEETTCEEECCCCTTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------
T ss_pred             cCCCCEEEEechhheecCCcccCCCCcCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCCCCcccccc
Confidence            9999999999999864321                              3667899999999999999999998643311


Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          515 KTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       515 ~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..                    ...... .. ..+    ...+.+|+.+||+.||++||++.|+++.
T Consensus       320 ~~--------------------~~~~~~-~~-~~~----~~~~~~li~~~L~~dp~~Rpt~~e~l~h  360 (377)
T 3byv_A          320 GG--------------------SEWIFR-SC-KNI----PQPVRALLEGFLRYPKEDRLLPLQAMET  360 (377)
T ss_dssp             CC--------------------SGGGGS-SC-CCC----CHHHHHHHHHHTCSSGGGCCCHHHHHTS
T ss_pred             cc--------------------hhhhhh-hc-cCC----CHHHHHHHHHHcCCCchhCCCHHHHhhC
Confidence            10                    111111 00 122    3457899999999999999999999974

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.97  E-value=3.6e-32  Score=282.70  Aligned_cols=218  Identities=19%  Similarity=0.352  Sum_probs=169.8

Q ss_pred             cccccccccc----ceEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhc-CCCCcccEEEEEEcC-----CCcEE
Q 047629          333 MNLSEHYSIG----KSVYRATI--DGKVLAVKKIK------EDVTEELRILQRI-NHANLVKLMGVSSDS-----QGNRF  394 (615)
Q Consensus       333 ~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~-----~~~~~  394 (615)
                      ..|.....+|    |.||+|..  +|+.||||.+.      ..+.+|+.++.++ +|+||+++++++...     ++..+
T Consensus        24 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~~  103 (326)
T 2x7f_A           24 GIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLW  103 (326)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCEEE
T ss_pred             CcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccceEE
Confidence            3444444444    58999998  78999999985      4688999999999 899999999998753     34689


Q ss_pred             EEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEee
Q 047629          395 LVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIAN  474 (615)
Q Consensus       395 lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~D  474 (615)
                      +||||+++|+|.+++.....        ..+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|
T Consensus       104 lv~e~~~~~~L~~~l~~~~~--------~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~~~kl~D  172 (326)
T 2x7f_A          104 LVMEFCGAGSVTDLIKNTKG--------NTLKEEWIAYICREILRGLSHLHQHK---VIHRDIKGQNVLLTENAEVKLVD  172 (326)
T ss_dssp             EEEECCTTEEHHHHHHHSGG--------GCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTCCEEECC
T ss_pred             EEEEcCCCCcHHHHHHhccc--------CCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCcHHHEEEcCCCCEEEee
Confidence            99999999999999976432        13899999999999999999999998   99999999999999999999999


Q ss_pred             cCCCCCCC----------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHH
Q 047629          475 FSLAAPAT----------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREV  526 (615)
Q Consensus       475 FGla~~~~----------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~  526 (615)
                      ||++....                            ..++.++||||||+++|||++|+.|+........      ..  
T Consensus       173 fg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~------~~--  244 (326)
T 2x7f_A          173 FGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRA------LF--  244 (326)
T ss_dssp             CTTTC-------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHH------HH--
T ss_pred             CcCceecCcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHH------HH--
Confidence            99986431                            1245689999999999999999999865432110      00  


Q ss_pred             HhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          527 LKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       527 ~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                               .+.....+.+.   +......+.+++.+||+.||.+||++.|+++.
T Consensus       245 ---------~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  287 (326)
T 2x7f_A          245 ---------LIPRNPAPRLK---SKKWSKKFQSFIESCLVKNHSQRPATEQLMKH  287 (326)
T ss_dssp             ---------HHHHSCCCCCS---CSCSCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             ---------HhhcCccccCC---ccccCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence                     01111112221   12223467899999999999999999999984

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=1.7e-31  Score=280.85  Aligned_cols=221  Identities=26%  Similarity=0.339  Sum_probs=163.8

Q ss_pred             ceEEEEEE--CCeEEEEEEccH------------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGKVLAVKKIKE------------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~------------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||++..  +|+.||||+++.            .+.+|++++++++|+||+++++++.+. +..++||||+++ +|.++
T Consensus        24 g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~-~l~~~  101 (346)
T 1ua2_A           24 ATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHK-SNISLVFDFMET-DLEVI  101 (346)
T ss_dssp             EEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCT-TCCEEEEECCSE-EHHHH
T ss_pred             EEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeC-CceEEEEEcCCC-CHHHH
Confidence            48999997  589999999852            467899999999999999999998654 478999999985 89999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-----
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-----  483 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-----  483 (615)
                      +.....         .+++.++..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++....     
T Consensus       102 ~~~~~~---------~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~  169 (346)
T 1ua2_A          102 IKDNSL---------VLTPSHIKAYMLMTLQGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAY  169 (346)
T ss_dssp             HTTCCS---------SCCSSHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCC
T ss_pred             HHhcCc---------CCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEEcCCCCEEEEecccceeccCCcccC
Confidence            876542         3888999999999999999999998   99999999999999999999999999865311     


Q ss_pred             -------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHh------
Q 047629          484 -------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLR------  538 (615)
Q Consensus       484 -------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------  538 (615)
                                         .++.++|||||||++|||++|+.|+......+.   ...+.......  ......      
T Consensus       170 ~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~---~~~i~~~~~~~--~~~~~~~~~~~~  244 (346)
T 1ua2_A          170 THQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQ---LTRIFETLGTP--TEEQWPDMCSLP  244 (346)
T ss_dssp             CCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH---HHHHHHHHCCC--CTTTSSSTTSST
T ss_pred             CcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHH---HHHHHHHcCCC--ChhhhhhhccCc
Confidence                               134578999999999999999999875442111   11111110000  000000      


Q ss_pred             hhcCCcCCCCCC-----hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          539 NWMDPNLESFYP-----IDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       539 ~~~dp~l~~~~~-----~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      +.+........+     ......+.+|+.+|++.||.+|||+.|++++-
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h~  293 (346)
T 1ua2_A          245 DYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMK  293 (346)
T ss_dssp             TCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSG
T ss_pred             ccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcCh
Confidence            000000000011     12335689999999999999999999999864

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.97  E-value=2e-31  Score=273.30  Aligned_cols=207  Identities=22%  Similarity=0.310  Sum_probs=164.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------------HHHHHHHHHHHhcC-CCCcccEEEEEEcCCCcEEEEEeecCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------------EDVTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENG  403 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------------~~~~~Ei~~l~~l~-H~niv~l~g~~~~~~~~~~lV~E~~~~G  403 (615)
                      |.||++..  +|+.||||.++                +.+.+|+++++++. ||||+++++++.+. +..++||||+++|
T Consensus        31 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~-~~~~lv~e~~~~~  109 (298)
T 1phk_A           31 SVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN-TFFFLVFDLMKKG  109 (298)
T ss_dssp             EEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS-SEEEEEEECCTTC
T ss_pred             eEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeeccC-CeEEEEEeccCCC
Confidence            58999998  68999999873                24668999999995 99999999998754 4799999999999


Q ss_pred             CHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-
Q 047629          404 SLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-  482 (615)
Q Consensus       404 sL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-  482 (615)
                      +|.+++....          .+++..+..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||++.... 
T Consensus       110 ~L~~~l~~~~----------~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~  176 (298)
T 1phk_A          110 ELFDYLTEKV----------TLSEKETRKIMRALLEVICALHKLN---IVHRDLKPENILLDDDMNIKLTDFGFSCQLDP  176 (298)
T ss_dssp             BHHHHHHHHS----------SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEECCT
T ss_pred             cHHHHHhccC----------CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcceEEEcCCCcEEEecccchhhcCC
Confidence            9999997643          3899999999999999999999998   9999999999999999999999999985431 


Q ss_pred             ---------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHH
Q 047629          483 ---------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREE  535 (615)
Q Consensus       483 ---------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~  535 (615)
                                                 ..++.++||||||+++|||++|+.|+......   ....   ..         
T Consensus       177 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~---~~~~---~~---------  241 (298)
T 1phk_A          177 GEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQM---LMLR---MI---------  241 (298)
T ss_dssp             TCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHH---HH---------
T ss_pred             CcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHH---HHHH---HH---------
Confidence                                       12456899999999999999999998654321   1110   00         


Q ss_pred             HHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          536 RLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       536 ~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       .....  .............+.+++.+||+.||.+|||+.|+++.
T Consensus       242 -~~~~~--~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  284 (298)
T 1phk_A          242 -MSGNY--QFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAH  284 (298)
T ss_dssp             -HHTCC--CCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred             -hcCCc--ccCcccccccCHHHHHHHHHHccCCcccCCCHHHHHhC
Confidence             01101  11111112344568999999999999999999999864

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.97  E-value=3.3e-31  Score=273.95  Aligned_cols=207  Identities=23%  Similarity=0.392  Sum_probs=167.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-----HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-----EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-----~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      |.||+|..  +|+.||||.+.     ..+.+|+.++.+++|+||+++++++.+. +..++||||+++|+|.+++..... 
T Consensus        43 g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~~~~-  120 (314)
T 3com_A           43 GSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYYGSYFKN-TDLWIVMEYCGAGSVSDIIRLRNK-  120 (314)
T ss_dssp             CEEEEEEETTTCCEEEEEEEETTSCCHHHHHHHHHHHTCCCTTBCCEEEEEEET-TEEEEEEECCTTEEHHHHHHHHTC-
T ss_pred             eEEEEEEECCCCCEEEEEecCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeC-CEEEEEeecCCCCCHHHHHHhcCC-
Confidence            58999998  58999999985     4688999999999999999999998754 478999999999999999974322 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------------  482 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------------  482 (615)
                              .+++..+..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||++....             
T Consensus       121 --------~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~  189 (314)
T 3com_A          121 --------TLTEDEIATILQSTLKGLEYLHFMR---KIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTP  189 (314)
T ss_dssp             --------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECBTTBSCBCCCCSCG
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHhCC---CcCCCcCHHHEEECCCCCEEEeecccchhhhhhccccCccCCCC
Confidence                    3899999999999999999999998   9999999999999999999999999985431             


Q ss_pred             ----------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChH
Q 047629          483 ----------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPID  552 (615)
Q Consensus       483 ----------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~  552 (615)
                                ..++.++||||||+++|||++|+.||........      ..           .+.....+..  ..+..
T Consensus       190 ~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~------~~-----------~~~~~~~~~~--~~~~~  250 (314)
T 3com_A          190 FWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRA------IF-----------MIPTNPPPTF--RKPEL  250 (314)
T ss_dssp             GGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHH------HH-----------HHHHSCCCCC--SSGGG
T ss_pred             CccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHH------HH-----------HHhcCCCccc--CCccc
Confidence                      1246689999999999999999999975432110      00           0111111111  11223


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          553 GALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       553 ~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ....+.+++..||+.||.+|||+.|+++.
T Consensus       251 ~~~~l~~li~~~l~~dp~~Rpt~~~ll~~  279 (314)
T 3com_A          251 WSDNFTDFVKQCLVKSPEQRATATQLLQH  279 (314)
T ss_dssp             SCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             CCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence            34568899999999999999999999874

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=5.7e-32  Score=285.64  Aligned_cols=218  Identities=23%  Similarity=0.307  Sum_probs=170.7

Q ss_pred             ccccccccc----ceEEEEEE-----CCeEEEEEEcc-----------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCc
Q 047629          334 NLSEHYSIG----KSVYRATI-----DGKVLAVKKIK-----------EDVTEELRILQRI-NHANLVKLMGVSSDSQGN  392 (615)
Q Consensus       334 ~~~~~~~iG----~~Vy~~~~-----~g~~vAvK~~~-----------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~  392 (615)
                      +|.....+|    |.||++..     +|+.||||+++           +.+.+|+++|.++ +|+||+++++++... +.
T Consensus        55 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~-~~  133 (355)
T 1vzo_A           55 NFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTE-TK  133 (355)
T ss_dssp             GEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEET-TE
T ss_pred             ceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeC-ce
Confidence            344444454    58999987     68999999875           2356799999999 799999999998754 47


Q ss_pred             EEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEE
Q 047629          393 RFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKI  472 (615)
Q Consensus       393 ~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl  472 (615)
                      .++||||+++|+|.+++....          .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||
T Consensus       134 ~~lv~e~~~~~~L~~~l~~~~----------~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kl  200 (355)
T 1vzo_A          134 LHLILDYINGGELFTHLSQRE----------RFTEHEVQIYVGEIVLALEHLHKLG---IIYRDIKLENILLDSNGHVVL  200 (355)
T ss_dssp             EEEEECCCCSCBHHHHHHHHS----------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEE
T ss_pred             EEEEeecCCCCCHHHHHHHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCcEEE
Confidence            899999999999999997643          2899999999999999999999998   999999999999999999999


Q ss_pred             eecCCCCCCC--------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHH
Q 047629          473 ANFSLAAPAT--------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREV  526 (615)
Q Consensus       473 ~DFGla~~~~--------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~  526 (615)
                      +|||+++...                          ..++.++|||||||++|||++|+.||............  ..  
T Consensus       201 ~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~--~~--  276 (355)
T 1vzo_A          201 TDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEI--SR--  276 (355)
T ss_dssp             SCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHH--HH--
T ss_pred             eeCCCCeecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHH--HH--
Confidence            9999885321                          11456899999999999999999999754432221110  00  


Q ss_pred             HhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHHHHH
Q 047629          527 LKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRP-----NMAEVVFNLS  583 (615)
Q Consensus       527 ~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~~L~  583 (615)
                               .+.. ..+    .++.+....+.+|+.+||+.||.+||     +++|+++...
T Consensus       277 ---------~~~~-~~~----~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~~  324 (355)
T 1vzo_A          277 ---------RILK-SEP----PYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLF  324 (355)
T ss_dssp             ---------HHHH-CCC----CCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGG
T ss_pred             ---------HHhc-cCC----CCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCcc
Confidence                     0110 112    23334445678999999999999999     9999988653

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.97  E-value=6.9e-32  Score=281.16  Aligned_cols=222  Identities=20%  Similarity=0.345  Sum_probs=165.0

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH--------HHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIKED--------VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~--------~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||+|..  +|+.||||+++..        +.+|++++++++|+||+++++++.+. +..++||||++ |+|.+++...
T Consensus        16 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~-~~l~~~~~~~   93 (324)
T 3mtl_A           16 ATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTE-KSLTLVFEYLD-KDLKQYLDDC   93 (324)
T ss_dssp             EEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECS-SCEEEEEECCS-EEHHHHHHHT
T ss_pred             EEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeC-CEEEEEecccc-cCHHHHHHhc
Confidence            58999998  6899999988632        34699999999999999999998754 47999999997 6999999765


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                      ..         .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...          
T Consensus        94 ~~---------~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  161 (324)
T 3mtl_A           94 GN---------IINMHNVKLFLFQLLRGLAYCHRQK---VLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDNEV  161 (324)
T ss_dssp             TT---------CCCHHHHHHHHHHHHHHHHHHHHTT---EEESSCCGGGEEECTTCCEEECSSSEEECC-----------
T ss_pred             CC---------CCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCcCHHHEEECCCCCEEEccCcccccccCCcccccccc
Confidence            43         3899999999999999999999998   9999999999999999999999999875321          


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHH-------HHHHHHhhhc
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE-------KREERLRNWM  541 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~  541 (615)
                                    ..++.++|||||||++|||++|+.||......+..   ..+...+....       ..........
T Consensus       162 ~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~  238 (324)
T 3mtl_A          162 VTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQL---HFIFRILGTPTEETWPGILSNEEFKTYN  238 (324)
T ss_dssp             -CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH---HHHHHHHCCCCTTTSTTGGGCHHHHHTC
T ss_pred             CcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH---HHHHHHhCCCChHhchhhhcchhhcccc
Confidence                          22567899999999999999999999765422211   11111110000       0000000000


Q ss_pred             CCcCCCC----CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 DPNLESF----YPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp~l~~~----~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+.....    ........+.+|+.+|++.||.+|||++|+++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  282 (324)
T 3mtl_A          239 YPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKH  282 (324)
T ss_dssp             CCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             cccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence            1110000    001223457899999999999999999999985

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.97  E-value=1.1e-31  Score=281.03  Aligned_cols=203  Identities=22%  Similarity=0.350  Sum_probs=165.1

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +++.+|+|.+.          +.+.+|+.++++++|+||+++++++.+. +..++||||+++++|.+++.
T Consensus        55 g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~  133 (335)
T 2owb_A           55 AKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDN-DFVFVVLELCRRRSLLELHK  133 (335)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECS-SEEEEEECCCTTCBHHHHHH
T ss_pred             eEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecC-CeEEEEEecCCCCCHHHHHh
Confidence            48999998  57899999874          2467899999999999999999998764 47899999999999999987


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ...          .+++.+++.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...        
T Consensus       134 ~~~----------~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~  200 (335)
T 2owb_A          134 RRK----------ALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKV  200 (335)
T ss_dssp             HHC----------SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCC
T ss_pred             ccC----------CCCHHHHHHHHHHHHHHHHHHHHCC---CEecCCCchhEEEcCCCCEEEeeccCceecccCcccccc
Confidence            643          3899999999999999999999998   9999999999999999999999999986432        


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ...+.++||||||+++|||++|+.||......+   .+   ..           +.. ....+  
T Consensus       201 ~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---~~---~~-----------~~~-~~~~~--  260 (335)
T 2owb_A          201 LCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKE---TY---LR-----------IKK-NEYSI--  260 (335)
T ss_dssp             CCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH---HH---HH-----------HHH-TCCCC--
T ss_pred             cCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHH---HH---HH-----------Hhc-CCCCC--
Confidence                           114568999999999999999999997543211   00   00           000 01112  


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                        +......+.+++.+||+.||++||++.|+++.
T Consensus       261 --~~~~~~~~~~li~~~l~~dp~~Rps~~ell~~  292 (335)
T 2owb_A          261 --PKHINPVAASLIQKMLQTDPTARPTINELLND  292 (335)
T ss_dssp             --CTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             --CccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence              22333457899999999999999999999985

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.97  E-value=7.7e-32  Score=275.11  Aligned_cols=209  Identities=17%  Similarity=0.310  Sum_probs=154.3

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH---------HHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIKED---------VTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~---------~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.||++..  +|+.||||+++..         +.++...++.++||||+++++++.+. +..++||||++ |+|.+++..
T Consensus        21 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~-~~~~lv~e~~~-~~l~~~l~~   98 (290)
T 3fme_A           21 GVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFRE-GDVWICMELMD-TSLDKFYKQ   98 (290)
T ss_dssp             EEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECS-SSEEEEEECCS-EEHHHHHHH
T ss_pred             eEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeecc-CCEEEEEehhc-cchHHHHHH
Confidence            58999998  7999999998632         23444557788999999999998864 47999999997 588888764


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhC-CCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH-AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      .....      ..+++..+..++.|++.||.|||++ +   |+||||||+|||++.++.+||+|||+++...        
T Consensus        99 ~~~~~------~~~~~~~~~~i~~qi~~~l~~lH~~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~  169 (290)
T 3fme_A           99 VIDKG------QTIPEDILGKIAVSIVKALEHLHSKLS---VIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDID  169 (290)
T ss_dssp             HHHTT------CCCCHHHHHHHHHHHHHHHHHHHHHSC---CCCCCCSGGGCEECTTCCEEBCCC---------------
T ss_pred             HHhcC------CCCCHHHHHHHHHHHHHHHHHHhhcCC---eecCCCCHHHEEECCCCCEEEeecCCccccccccccccc
Confidence            21100      1389999999999999999999997 7   9999999999999999999999999985421        


Q ss_pred             ------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCc
Q 047629          483 ------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPN  544 (615)
Q Consensus       483 ------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~  544 (615)
                                        ..++.++||||||+++|||++|+.|+........     .+..          .... ..+.
T Consensus       170 ~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-----~~~~----------~~~~-~~~~  233 (290)
T 3fme_A          170 AGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQ-----QLKQ----------VVEE-PSPQ  233 (290)
T ss_dssp             CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHH-----HHHH----------HHHS-CCCC
T ss_pred             CCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHH-----HHHH----------Hhcc-CCCC
Confidence                              1245688999999999999999999975332111     0110          1111 1111


Q ss_pred             CCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          545 LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       545 l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .   .+......+.+++.+||+.||++|||+.|++++
T Consensus       234 ~---~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~h  267 (290)
T 3fme_A          234 L---PADKFSAEFVDFTSQCLKKNSKERPTYPELMQH  267 (290)
T ss_dssp             C---CTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             c---ccccCCHHHHHHHHHHhhcChhhCcCHHHHHhC
Confidence            1   112334568899999999999999999999874

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.97  E-value=2.7e-31  Score=272.21  Aligned_cols=207  Identities=23%  Similarity=0.385  Sum_probs=163.7

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcC------------CCcEEEEEeecCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDS------------QGNRFLVYEYAEN  402 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~------------~~~~~lV~E~~~~  402 (615)
                      |.||+|..  +|+.||||+++      ..+.+|+.++++++||||+++++++.+.            .+..++||||+++
T Consensus        20 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~   99 (303)
T 1zy4_A           20 GQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCEN   99 (303)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC------CEEEEEEEEECCCS
T ss_pred             EEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcccccCCceEEEEecCCC
Confidence            58999997  78999999985      3477899999999999999999987642            2357999999999


Q ss_pred             CCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC
Q 047629          403 GSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT  482 (615)
Q Consensus       403 GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~  482 (615)
                      |+|.+++.....         .+++..++.++.|++.||+|||+++   ++||||||+|||++.++.+||+|||+++...
T Consensus       100 ~~L~~~l~~~~~---------~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~  167 (303)
T 1zy4_A          100 GTLYDLIHSENL---------NQQRDEYWRLFRQILEALSYIHSQG---IIHRDLKPMNIFIDESRNVKIGDFGLAKNVH  167 (303)
T ss_dssp             CBHHHHHHHSCG---------GGCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCCCCCSCTT
T ss_pred             CCHHHhhhcccc---------ccchHHHHHHHHHHHHHHHHHHhCC---eecccCCHHhEEEcCCCCEEEeeCcchhhcc
Confidence            999999976432         3889999999999999999999998   9999999999999999999999999986431


Q ss_pred             --------------------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHH
Q 047629          483 --------------------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIR  524 (615)
Q Consensus       483 --------------------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~  524 (615)
                                                            ..++.++||||||+++|||++   |+....+  ...    . 
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~--~~~----~-  237 (303)
T 1zy4_A          168 RSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGME--RVN----I-  237 (303)
T ss_dssp             C-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHH--HHH----H-
T ss_pred             cccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchh--HHH----H-
Confidence                                                  124568999999999999998   4332110  000    0 


Q ss_pred             HHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          525 EVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       525 ~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                               ...+.. ....+...++......+.+++.+||+.||.+|||+.|+++.
T Consensus       238 ---------~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  284 (303)
T 1zy4_A          238 ---------LKKLRS-VSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNS  284 (303)
T ss_dssp             ---------HHHHHS-TTCCCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             ---------HHhccc-cccccCccccccchHHHHHHHHHHHhcCcccCcCHHHHhCC
Confidence                     001111 12223334455555678999999999999999999999985

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.97  E-value=3.2e-31  Score=279.96  Aligned_cols=242  Identities=19%  Similarity=0.252  Sum_probs=177.4

Q ss_pred             eHHHHHHHccccccccccc----ceEEEEEE-CCeEEEEEEcc------------------HHHHHHHHHHHhcCCCCcc
Q 047629          324 EIEVIMESTMNLSEHYSIG----KSVYRATI-DGKVLAVKKIK------------------EDVTEELRILQRINHANLV  380 (615)
Q Consensus       324 ~~~~l~~at~~~~~~~~iG----~~Vy~~~~-~g~~vAvK~~~------------------~~~~~Ei~~l~~l~H~niv  380 (615)
                      ..+++......|.....+|    |.||+|.. +|+.||||++.                  +.+.+|++++++++||||+
T Consensus        13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv   92 (362)
T 3pg1_A           13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL   92 (362)
T ss_dssp             HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence            3466777777777777776    58999987 78999999873                  4578999999999999999


Q ss_pred             cEEEEEEcCC----CcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecC
Q 047629          381 KLMGVSSDSQ----GNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD  456 (615)
Q Consensus       381 ~l~g~~~~~~----~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrD  456 (615)
                      ++++++...+    ...++||||++ |+|.+++.....         .+++..+..++.|++.||.|||+++   |+|||
T Consensus        93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~---------~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~D  159 (362)
T 3pg1_A           93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRI---------VISPQHIQYFMYHILLGLHVLHEAG---VVHRD  159 (362)
T ss_dssp             CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTS---------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCCC
T ss_pred             ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhccc---------CCCHHHHHHHHHHHHHHHHHHHHCc---CEecC
Confidence            9999885422    24799999998 689998875442         3899999999999999999999998   99999


Q ss_pred             CCCCceeeCCCCcEEEeecCCCCCCC-----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCC
Q 047629          457 IRTNNIQLDSRFKAKIANFSLAAPAT-----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTEN  513 (615)
Q Consensus       457 lk~~NILld~~~~~kl~DFGla~~~~-----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~  513 (615)
                      |||+|||++.++.+||+|||+++...                       ..++.++|||||||++|||++|+.||.....
T Consensus       160 lkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~  239 (362)
T 3pg1_A          160 LHPGNILLADNNDITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTF  239 (362)
T ss_dssp             CCGGGEEECTTCCEEECCTTC---------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred             CChHHEEEcCCCCEEEEecCcccccccccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCH
Confidence            99999999999999999999985321                       2356789999999999999999999976442


Q ss_pred             ChhHHHHHHHHHHHhHHHHH------HHHHhhhcCCcCCC-------CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          514 GKTAVLWKEIREVLKVEEKR------EERLRNWMDPNLES-------FYPIDGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       514 ~~~~~l~~~~~~~~~~~~~~------~~~~~~~~dp~l~~-------~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                      .+.   ...+..........      .....+.+...+..       .........+.+|+..|++.||.+|||+.|+++
T Consensus       240 ~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  316 (362)
T 3pg1_A          240 YNQ---LNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR  316 (362)
T ss_dssp             HHH---HHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHH---HHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence            111   11111111000000      00111111111110       011122345889999999999999999999998


Q ss_pred             H
Q 047629          581 N  581 (615)
Q Consensus       581 ~  581 (615)
                      +
T Consensus       317 h  317 (362)
T 3pg1_A          317 H  317 (362)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.97  E-value=6.9e-31  Score=273.96  Aligned_cols=209  Identities=18%  Similarity=0.308  Sum_probs=166.5

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||||.++         ..+.+|+.++.++ +|+||+++++++.+. +..++||||+++|+|.+++.
T Consensus        43 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~  121 (327)
T 3lm5_A           43 AVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENT-SEIILILEYAAGGEIFSLCL  121 (327)
T ss_dssp             EEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-SEEEEEEECCTTEEGGGGGS
T ss_pred             eEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeC-CeEEEEEEecCCCcHHHHHH
Confidence            58999988  58999999885         3578899999999 569999999998754 47999999999999999996


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC---CCcEEEeecCCCCCCC-----
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS---RFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~---~~~~kl~DFGla~~~~-----  482 (615)
                      .....        .+++.+++.++.|++.||+|||+++   |+||||||+|||++.   ++.+||+|||+++...     
T Consensus       122 ~~~~~--------~~~~~~~~~i~~ql~~~L~~LH~~g---ivH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~  190 (327)
T 3lm5_A          122 PELAE--------MVSENDVIRLIKQILEGVYYLHQNN---IVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACEL  190 (327)
T ss_dssp             SCC-C--------CCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESCBTTBCCEEECCGGGCEEC------
T ss_pred             Hhccc--------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCcCChHHEEEecCCCCCcEEEeeCccccccCCcccc
Confidence            54321        3899999999999999999999998   999999999999998   7899999999986432     


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                       ..++.++||||||+++|||++|+.||......+.   .   .           .+.. .....
T Consensus       191 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~---~---~-----------~i~~-~~~~~  252 (327)
T 3lm5_A          191 REIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQET---Y---L-----------NISQ-VNVDY  252 (327)
T ss_dssp             ---CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH---H---H-----------HHHH-TCCCC
T ss_pred             ccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHH---H---H-----------HHHh-ccccc
Confidence                             2246789999999999999999999976442111   0   0           0010 11111


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ...........+.+++.+||+.||.+|||+.|+++.
T Consensus       253 ~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h  288 (327)
T 3lm5_A          253 SEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSH  288 (327)
T ss_dssp             CTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred             CchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhCC
Confidence            112223344568899999999999999999999875

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.97  E-value=1.1e-31  Score=280.20  Aligned_cols=230  Identities=21%  Similarity=0.335  Sum_probs=164.8

Q ss_pred             ccccccccc----ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEe
Q 047629          334 NLSEHYSIG----KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYE  398 (615)
Q Consensus       334 ~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E  398 (615)
                      +|.....+|    |.||++..  +|+.||||+++         ..+.+|++++++++|+||+++++++.+. ...++|||
T Consensus        35 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e  113 (329)
T 3gbz_A           35 RYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHN-HRLHLIFE  113 (329)
T ss_dssp             GEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEET-TEEEEEEE
T ss_pred             hEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecC-CEEEEEEe
Confidence            344444554    58999986  78999999985         2356899999999999999999998764 47999999


Q ss_pred             ecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceee-----CCCCcEEEe
Q 047629          399 YAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL-----DSRFKAKIA  473 (615)
Q Consensus       399 ~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl-----d~~~~~kl~  473 (615)
                      |++ |+|.+++.....          +++..+..++.|++.||.|||+++   |+||||||+|||+     +.++.+||+
T Consensus       114 ~~~-~~L~~~~~~~~~----------~~~~~~~~i~~ql~~~l~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~~kl~  179 (329)
T 3gbz_A          114 YAE-NDLKKYMDKNPD----------VSMRVIKSFLYQLINGVNFCHSRR---CLHRDLKPQNLLLSVSDASETPVLKIG  179 (329)
T ss_dssp             CCS-EEHHHHHHHCTT----------CCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEC-----CCEEEEC
T ss_pred             cCC-CCHHHHHhhcCC----------CCHHHHHHHHHHHHHHHHHHHhCC---EECCCCCHHHEEEecCCCCccceEEEC
Confidence            998 599999976542          899999999999999999999998   9999999999999     455669999


Q ss_pred             ecCCCCCCC------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhH
Q 047629          474 NFSLAAPAT------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV  529 (615)
Q Consensus       474 DFGla~~~~------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~  529 (615)
                      |||+++...                        ..++.++|||||||++|||++|+.||......+.  +.. +......
T Consensus       180 Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~--~~~-~~~~~~~  256 (329)
T 3gbz_A          180 DFGLARAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQ--LFK-IFEVLGL  256 (329)
T ss_dssp             CTTHHHHHC-----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHH-HHHHHCC
T ss_pred             cCCCccccCCcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHH--HHH-HHHHhCC
Confidence            999874311                        1257789999999999999999999976442111  111 1111000


Q ss_pred             HHHH----HHHHhhhcC--CcCCCC-----CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          530 EEKR----EERLRNWMD--PNLESF-----YPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       530 ~~~~----~~~~~~~~d--p~l~~~-----~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ....    ......+.+  +.....     .+......+.+|+.+||+.||++|||+.|++++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  319 (329)
T 3gbz_A          257 PDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALEH  319 (329)
T ss_dssp             CCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             CchhhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhCC
Confidence            0000    000000000  000000     001123567899999999999999999999864

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.97  E-value=2.8e-31  Score=273.58  Aligned_cols=207  Identities=23%  Similarity=0.347  Sum_probs=166.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||++..  +|+.||+|.++       ..+.+|++++++++||||+++++++.+. +..++||||+++|+|.+++....
T Consensus        23 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~  101 (304)
T 2jam_A           23 SEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYEST-THYYLVMQLVSGGELFDRILERG  101 (304)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEEEECCCCSCBHHHHHHHHS
T ss_pred             ceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccC-CEEEEEEEcCCCccHHHHHHHcC
Confidence            58999997  68999999985       2477899999999999999999998754 47899999999999999997543


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceee---CCCCcEEEeecCCCCCCCC-------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL---DSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl---d~~~~~kl~DFGla~~~~~-------  483 (615)
                                .+++..+..++.|++.||.|||+++   |+||||||+||++   +.++.+||+|||+++....       
T Consensus       102 ----------~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~  168 (304)
T 2jam_A          102 ----------VYTEKDASLVIQQVLSAVKYLHENG---IVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTAC  168 (304)
T ss_dssp             ----------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBTTHHHH
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEecCCCCCCEEEccCCcceecCCCcccccc
Confidence                      2899999999999999999999998   9999999999999   7889999999999865422       


Q ss_pred             --------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          484 --------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       484 --------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                    .++.++||||||+++|||++|+.||......   .+...+             .....  ......
T Consensus       169 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~~~~~i-------------~~~~~--~~~~~~  230 (304)
T 2jam_A          169 GTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETES---KLFEKI-------------KEGYY--EFESPF  230 (304)
T ss_dssp             SCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHH---HHHHHH-------------HHCCC--CCCTTT
T ss_pred             CCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH---HHHHHH-------------HcCCC--CCCccc
Confidence                          2456899999999999999999999754321   111100             00111  111122


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..+....+.+++..|++.||++||++.|+++.
T Consensus       231 ~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h  262 (304)
T 2jam_A          231 WDDISESAKDFICHLLEKDPNERYTCEKALSH  262 (304)
T ss_dssp             TTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             cccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            23344568999999999999999999999985

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.97  E-value=2.9e-31  Score=272.61  Aligned_cols=207  Identities=22%  Similarity=0.381  Sum_probs=165.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||+|..  +|+.||+|.+.       ..+.+|++++++++||||+++++++.+. +..++||||+++|+|.+++....
T Consensus        33 g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~l~~~~~~~~  111 (302)
T 2j7t_A           33 GKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHD-GKLWIMIEFCPGGAVDAIMLELD  111 (302)
T ss_dssp             CCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC--CEEEEEECCTTEEHHHHHHHHT
T ss_pred             eEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeC-CeEEEEEEeCCCCcHHHHHHhhc
Confidence            58999998  58999999885       3577899999999999999999998764 47999999999999999987543


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC------------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA------------  481 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~------------  481 (615)
                      .         .+++..+..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||++...            
T Consensus       112 ~---------~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  179 (302)
T 2j7t_A          112 R---------GLTEPQIQVVCRQMLEALNFLHSKR---IIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIG  179 (302)
T ss_dssp             S---------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHHC-----C
T ss_pred             c---------CCCHHHHHHHHHHHHHHHHHHhcCC---cccCCCCHHHEEECCCCCEEEEECCCCccccccccccccccC
Confidence            2         3899999999999999999999998   999999999999999999999999985210            


Q ss_pred             ----------------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          482 ----------------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       482 ----------------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                      ...++.++||||||+++|||++|+.|+........      ...           +.....+.+
T Consensus       180 ~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~------~~~-----------~~~~~~~~~  242 (302)
T 2j7t_A          180 TPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRV------LLK-----------IAKSDPPTL  242 (302)
T ss_dssp             CGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH------HHH-----------HHHSCCCCC
T ss_pred             ChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHH------HHH-----------HhccCCccc
Confidence                            12356789999999999999999999875432110      000           111111111


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                        ..+......+.+++..||+.||.+|||+.|+++.
T Consensus       243 --~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  276 (302)
T 2j7t_A          243 --LTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEH  276 (302)
T ss_dssp             --SSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTTS
T ss_pred             --CCccccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence              1223344568999999999999999999999874

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.97  E-value=4.3e-32  Score=278.56  Aligned_cols=220  Identities=21%  Similarity=0.298  Sum_probs=157.5

Q ss_pred             ceEEEEEE--CCeEEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||++..  +|+.||||++..        .+.+|+.++++++||||+++++++... +..++||||+++|+|.+++...
T Consensus        29 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~  107 (303)
T 2vwi_A           29 AVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVK-DELWLVMKLLSGGSVLDIIKHI  107 (303)
T ss_dssp             CCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESS-SCEEEEEECCTTCBHHHHHHHH
T ss_pred             eEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeec-CCcEEEehhccCCchHHHHHHH
Confidence            48999986  789999998852        366899999999999999999998765 4799999999999999998641


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                      .....  .....+++..+..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||+++...          
T Consensus       108 ~~~~~--~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  182 (303)
T 2vwi_A          108 VAKGE--HKSGVLDESTIATILREVLEGLEYLHKNG---QIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKV  182 (303)
T ss_dssp             HHTTT--TTTCSSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTCCEEECCCHHHHHCC----------
T ss_pred             hhccc--cccCCCCHHHHHHHHHHHHHHHHHHHhCC---CCCCCCChhhEEEcCCCCEEEEeccchheeccCCCccchhh
Confidence            10000  00013899999999999999999999998   9999999999999999999999999864321          


Q ss_pred             -------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHH-hhhcC
Q 047629          483 -------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERL-RNWMD  542 (615)
Q Consensus       483 -------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~d  542 (615)
                                         ..++.++||||||+++|||++|+.||..........      ......   .... ....+
T Consensus       183 ~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~------~~~~~~---~~~~~~~~~~  253 (303)
T 2vwi_A          183 RKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLM------LTLQND---PPSLETGVQD  253 (303)
T ss_dssp             -----CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHH------HHHTSS---CCCTTC----
T ss_pred             hcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHH------HHhccC---CCcccccccc
Confidence                               124678999999999999999999997654322110      000000   0000 00011


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +.+..    .....+.+++.+||+.||.+||++.|+++.
T Consensus       254 ~~~~~----~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  288 (303)
T 2vwi_A          254 KEMLK----KYGKSFRKMISLCLQKDPEKRPTAAELLRH  288 (303)
T ss_dssp             -CCCC----CCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             chhhh----hhhHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence            11112    233457899999999999999999999874

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=3.4e-31  Score=281.03  Aligned_cols=220  Identities=21%  Similarity=0.356  Sum_probs=165.4

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCC-----CcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQ-----GNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~-----~~~~lV~E~~~~GsL~  406 (615)
                      |.||+|..  +|+.||||++.         +.+.+|+++|++++|+||+++++++...+     ...++||||+ +++|.
T Consensus        39 g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~L~  117 (367)
T 1cm8_A           39 GAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLG  117 (367)
T ss_dssp             -CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHH
T ss_pred             eEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCceEEEEEecC-CCCHH
Confidence            58999997  68999999983         34678999999999999999999986432     2369999999 78999


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----  482 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----  482 (615)
                      +++...           .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...    
T Consensus       118 ~~~~~~-----------~l~~~~~~~~~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  183 (367)
T 1cm8_A          118 KLMKHE-----------KLGEDRIQFLVYQMLKGLRYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLARQADSEMT  183 (367)
T ss_dssp             HHHHHC-----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECCSSCC
T ss_pred             HHHhcC-----------CCCHHHHHHHHHHHHHHHHHHHHCC---ccccCcCHHHEEEcCCCCEEEEeeecccccccccC
Confidence            999753           2889999999999999999999998   9999999999999999999999999986431    


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH----------HHHHH
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE----------EKREE  535 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~----------~~~~~  535 (615)
                                       ..++.++||||+||++|||++|+.||......+.   ...+.......          .....
T Consensus       184 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~---l~~i~~~~g~~~~~~~~~~~~~~~~~  260 (367)
T 1cm8_A          184 GYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQ---LKEIMKVTGTPPAEFVQRLQSDEAKN  260 (367)
T ss_dssp             SSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHH---HHHHHHHHCCCCHHHHHTCSCHHHHH
T ss_pred             cCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHHhcCCCCHHHHHHhhhHHHHH
Confidence                             2356789999999999999999999976542211   11111111000          00000


Q ss_pred             HHhh---hcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          536 RLRN---WMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       536 ~~~~---~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+..   .-...+. .........+.+|+.+|++.||.+|||+.|++++
T Consensus       261 ~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~h  308 (367)
T 1cm8_A          261 YMKGLPELEKKDFA-SILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH  308 (367)
T ss_dssp             HHHHSCCCCCCCGG-GTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHHhCCCCCCCCHH-HHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcC
Confidence            0111   0011111 1122334568899999999999999999999985

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.97  E-value=2.5e-31  Score=279.00  Aligned_cols=222  Identities=19%  Similarity=0.288  Sum_probs=165.6

Q ss_pred             ceEEEEEECCeEEEEEEcc------------------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEe
Q 047629          343 KSVYRATIDGKVLAVKKIK------------------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYE  398 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~------------------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E  398 (615)
                      |.||++..+|+.||||.+.                        ..+.+|++++.+++||||+++++++.+. +..++|||
T Consensus        45 g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e  123 (348)
T 2pml_X           45 NKIILCEKDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCEGIITNY-DEVYIIYE  123 (348)
T ss_dssp             CCEEEEEETTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCSEEEESS-SEEEEEEE
T ss_pred             eEEEEEEcCCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEEEEEeeC-CeEEEEEe
Confidence            4899999999999999885                        4578899999999999999999998764 47999999


Q ss_pred             ecCCCCHHHh------hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHh-CCCCCeEecCCCCCceeeCCCCcEE
Q 047629          399 YAENGSLDKW------LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE-HAQPSIVHRDIRTNNIQLDSRFKAK  471 (615)
Q Consensus       399 ~~~~GsL~~~------L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~ivHrDlk~~NILld~~~~~k  471 (615)
                      |+++|+|.++      +.....        ..+++..+..++.|++.||.|||+ ++   ++||||||+||+++.++.+|
T Consensus       124 ~~~~~~L~~~~~~~~~l~~~~~--------~~~~~~~~~~i~~qi~~~l~~lH~~~~---i~H~dl~p~Nil~~~~~~~k  192 (348)
T 2pml_X          124 YMENDSILKFDEYFFVLDKNYT--------CFIPIQVIKCIIKSVLNSFSYIHNEKN---ICHRDVKPSNILMDKNGRVK  192 (348)
T ss_dssp             CCTTCBSSEESSSEESSCSSSC--------CCCCHHHHHHHHHHHHHHHHHHHHTSC---EECCCCCGGGEEECTTSCEE
T ss_pred             ccCCCcHHHHHHHhhhhhhccc--------cCCCHHHHHHHHHHHHHHHHHHhccCC---EeecCCChHhEEEcCCCcEE
Confidence            9999999999      544211        148999999999999999999999 87   99999999999999999999


Q ss_pred             EeecCCCCCCCC----------------------CCCC-cccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHh
Q 047629          472 IANFSLAAPATN----------------------DVMP-KFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLK  528 (615)
Q Consensus       472 l~DFGla~~~~~----------------------~~~~-k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~  528 (615)
                      |+|||+++....                      .++. ++||||||+++|||++|+.||........  ....+.   .
T Consensus       193 l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--~~~~i~---~  267 (348)
T 2pml_X          193 LSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVE--LFNNIR---T  267 (348)
T ss_dssp             ECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHH--HHHHHT---S
T ss_pred             EeccccccccccccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHH--HHHHHh---c
Confidence            999999864311                      1223 89999999999999999999976543211  111000   0


Q ss_pred             HHHHHHHHHhhhcCCcC---CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          529 VEEKREERLRNWMDPNL---ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       529 ~~~~~~~~~~~~~dp~l---~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ...........+..+..   ...........+.+++.+||+.||.+|||+.|++++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~h  323 (348)
T 2pml_X          268 KNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKH  323 (348)
T ss_dssp             CCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             cCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            00000000000000000   000012334568999999999999999999999885

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.97  E-value=4.3e-31  Score=288.87  Aligned_cols=220  Identities=20%  Similarity=0.307  Sum_probs=161.7

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCC-----CcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQ-----GNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~-----~~~~lV~E~~~~GsL~  406 (615)
                      |.||++..  +|+.||||++.         +.+.+|+.+|++++||||+++++++...+     ...++||||+++ +|.
T Consensus        76 g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~E~~~~-~l~  154 (464)
T 3ttj_A           76 GIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDA-NLC  154 (464)
T ss_dssp             CEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCSE-EHH
T ss_pred             eEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCCeEEEEEeCCCC-CHH
Confidence            58999987  68999999985         24678999999999999999999986432     247999999976 577


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----  482 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----  482 (615)
                      +.+..            .+++.++..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...    
T Consensus       155 ~~~~~------------~l~~~~~~~~~~qil~aL~~lH~~~---iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~  219 (464)
T 3ttj_A          155 QVIQM------------ELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM  219 (464)
T ss_dssp             HHHTS------------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCCCC-----CCC
T ss_pred             HHHhh------------cCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChHhEEEeCCCCEEEEEEEeeeecCCCcc
Confidence            76643            2889999999999999999999998   9999999999999999999999999986532    


Q ss_pred             ------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHH-----HHHHHhh
Q 047629          483 ------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEK-----REERLRN  539 (615)
Q Consensus       483 ------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~  539 (615)
                                        ..++.++|||||||++|||++|+.||......   ..+..+...+.....     .......
T Consensus       220 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~---~~~~~i~~~lg~p~~~~~~~~~~~~~~  296 (464)
T 3ttj_A          220 MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRN  296 (464)
T ss_dssp             C----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHHHHHHCSCCHHHHTTSCHHHHH
T ss_pred             cCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHH---HHHHHHHHhcCCCCHHHHHHcchhhhh
Confidence                              12567899999999999999999999764421   122222221110000     0001111


Q ss_pred             hcCCc--CCC-----CCC-----------hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          540 WMDPN--LES-----FYP-----------IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       540 ~~dp~--l~~-----~~~-----------~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .++..  ...     .++           ......+.+|+.+|++.||++|||++|++++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  356 (464)
T 3ttj_A          297 YVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  356 (464)
T ss_dssp             HHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             HhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            11110  000     000           1124568999999999999999999999985

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.97  E-value=7.2e-32  Score=286.76  Aligned_cols=202  Identities=22%  Similarity=0.277  Sum_probs=155.8

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHHHHHH-HHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTEELRI-LQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~-l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||++..  +|+.||||++++.          +..|..+ ++.++||||+++++++.+. +..++||||+++|+|.+++
T Consensus        52 g~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~-~~~~lv~E~~~gg~L~~~l  130 (373)
T 2r5t_A           52 GKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTA-DKLYFVLDYINGGELFYHL  130 (373)
T ss_dssp             CEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECS-SEEEEEEECCCSCBHHHHH
T ss_pred             eEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeC-CEEEEEEeCCCCCcHHHHH
Confidence            58999998  6889999998632          3456665 4668999999999998764 4799999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      ....          .+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+++...       
T Consensus       131 ~~~~----------~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~~~~~  197 (373)
T 2r5t_A          131 QRER----------CFLEPRARFYAAEIASALGYLHSLN---IVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTS  197 (373)
T ss_dssp             HHHS----------SCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCCCCCC
T ss_pred             HhcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEECCCCCEEEeeCccccccccCCCccc
Confidence            7643          2889999999999999999999998   9999999999999999999999999986421       


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                      ..++.++|||||||++|||++|+.||.....   .....   ..          +..  ..   
T Consensus       198 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~---~~~~~---~i----------~~~--~~---  256 (373)
T 2r5t_A          198 TFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT---AEMYD---NI----------LNK--PL---  256 (373)
T ss_dssp             SBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBH---HHHHH---HH----------HHS--CC---
T ss_pred             cccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH---HHHHH---HH----------Hhc--cc---
Confidence                            1245789999999999999999999975432   11111   00          111  11   


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                       .++......+.+|+..|++.||.+||++.+.++
T Consensus       257 -~~~~~~~~~~~~li~~lL~~dp~~R~~~~~~~~  289 (373)
T 2r5t_A          257 -QLKPNITNSARHLLEGLLQKDRTKRLGAKDDFM  289 (373)
T ss_dssp             -CCCSSSCHHHHHHHHHHTCSSGGGSTTTTTTHH
T ss_pred             -CCCCCCCHHHHHHHHHHcccCHHhCCCCCCCHH
Confidence             122333456789999999999999999854333

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.97  E-value=4.4e-31  Score=288.34  Aligned_cols=148  Identities=26%  Similarity=0.478  Sum_probs=126.4

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCC----CcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQ----GNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~----~~~~lV~E~~~~GsL~~  407 (615)
                      |.||++..  +|+.||||++.         +.+.+|+++|++++|+||+++++++...+    ...++||||+. |+|.+
T Consensus        67 g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~lv~e~~~-~~L~~  145 (458)
T 3rp9_A           67 GHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDELYVVLEIAD-SDFKK  145 (458)
T ss_dssp             -CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEECCCS-EEHHH
T ss_pred             eEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceEEEEEeccc-cchhh
Confidence            58999986  68999999885         34678999999999999999999985332    35899999984 79999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++....          .+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+++...     
T Consensus       146 ~~~~~~----------~l~~~~~~~~~~qi~~aL~~LH~~~---iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~  212 (458)
T 3rp9_A          146 LFRTPV----------YLTELHIKTLLYNLLVGVKYVHSAG---ILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENG  212 (458)
T ss_dssp             HHHSSC----------CCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTCCEEECCCTTCBCTTSCTTC
T ss_pred             hcccCC----------CCCHHHHHHHHHHHHHHHHHHHhCC---cCCCCCChhhEEECCCCCEeecccccchhccCcccc
Confidence            997643          3899999999999999999999998   9999999999999999999999999996531     


Q ss_pred             ----------------------------------------------CCCCCcccchhHHHHHHHHHcC
Q 047629          483 ----------------------------------------------NDVMPKFDVFAFGVVLLELLSG  504 (615)
Q Consensus       483 ----------------------------------------------~~~~~k~DV~SfGvvl~ElltG  504 (615)
                                                                    ..++.++|||||||+||||++|
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg  280 (458)
T 3rp9_A          213 NSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM  280 (458)
T ss_dssp             CCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred             ccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence                                                          1245689999999999999994

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.97  E-value=1.7e-31  Score=293.73  Aligned_cols=207  Identities=26%  Similarity=0.310  Sum_probs=165.7

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||||++.          ..+.+|+.++++++||||+++++++.+ ++..++||||+++|+|.+++.
T Consensus        40 g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~  118 (484)
T 3nyv_A           40 GEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFED-KGYFYLVGEVYTGGELFDEII  118 (484)
T ss_dssp             EEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-SSEEEEEECCCCSCBHHHHHH
T ss_pred             EEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEe-CCEEEEEEecCCCCCHHHHHH
Confidence            58999997  68999999974          347899999999999999999999875 447999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceee---CCCCcEEEeecCCCCCCC-----
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL---DSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl---d~~~~~kl~DFGla~~~~-----  482 (615)
                      ...          .+++..+..++.|++.||.|||+++   |+||||||+|||+   +.++.+||+|||+++...     
T Consensus       119 ~~~----------~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~  185 (484)
T 3nyv_A          119 SRK----------RFSEVDAARIIRQVLSGITYMHKNK---IVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKM  185 (484)
T ss_dssp             TCS----------CCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCCSH
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEccccccc
Confidence            654          2899999999999999999999998   9999999999999   467899999999885432     


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                      ..++.++||||+||++|||++|+.||......+   ...   ..          ......... 
T Consensus       186 ~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~---~~~---~i----------~~~~~~~~~-  248 (484)
T 3nyv_A          186 KDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYD---ILK---KV----------EKGKYTFEL-  248 (484)
T ss_dssp             HHHTTGGGTCCHHHHHTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHH---HH----------HHCCCCCCS-
T ss_pred             ccCCCCccccCceeecCCCCCcceeHHHHHHHHHHHHCCCCCCCCCHHH---HHH---HH----------HcCCCCCCC-
Confidence                            135678999999999999999999997644211   111   00          000011100 


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       .........+.+|+..||+.||.+|||+.|++++
T Consensus       249 -~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h  282 (484)
T 3nyv_A          249 -PQWKKVSESAKDLIRKMLTYVPSMRISARDALDH  282 (484)
T ss_dssp             -GGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             -cccccCCHHHHHHHHHHCCCChhHCcCHHHHhhC
Confidence             1112334568899999999999999999999975

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.97  E-value=4.4e-31  Score=290.60  Aligned_cols=207  Identities=25%  Similarity=0.310  Sum_probs=164.6

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.||++..  +|+.||||++..         .+.+|+++|++++||||+++++++.+. +..++||||+++|+|.+++..
T Consensus        36 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~  114 (486)
T 3mwu_A           36 GEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDS-SSFYIVGELYTGGELFDEIIK  114 (486)
T ss_dssp             SEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEEEECCCCSCBHHHHHHH
T ss_pred             EEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcC-CEEEEEEEcCCCCcHHHHHHh
Confidence            58999997  689999999852         467899999999999999999998764 479999999999999999876


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeC---CCCcEEEeecCCCCCCCC-----
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD---SRFKAKIANFSLAAPATN-----  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld---~~~~~kl~DFGla~~~~~-----  483 (615)
                      ..          .+++..+..++.|++.||.|||+++   |+||||||+|||++   .++.+||+|||+++....     
T Consensus       115 ~~----------~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~  181 (486)
T 3mwu_A          115 RK----------RFSEHDAARIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMK  181 (486)
T ss_dssp             HS----------SCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC----
T ss_pred             cC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCCccC
Confidence            43          2899999999999999999999998   99999999999995   456799999999864321     


Q ss_pred             ----------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          484 ----------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       484 ----------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                      .++.++||||+||++|||++|+.||......+   ..   ...          .........  
T Consensus       182 ~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~---~~---~~i----------~~~~~~~~~--  243 (486)
T 3mwu_A          182 DRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNEYD---IL---KRV----------ETGKYAFDL--  243 (486)
T ss_dssp             CCTTGGGGCCGGGGGSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH---HHH----------HHTCCCSCS--
T ss_pred             CCcCCCCCCCHHHhCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---HH---HHH----------HhCCCCCCC--
Confidence                            24568999999999999999999997543211   11   100          000011000  


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .........+.+++..||+.||.+|||+.|++++
T Consensus       244 ~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~h  277 (486)
T 3mwu_A          244 PQWRTISDDAKDLIRKMLTFHPSLRITATQCLEH  277 (486)
T ss_dssp             GGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred             cccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            0112234567899999999999999999999986

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.97  E-value=3.5e-31  Score=292.03  Aligned_cols=207  Identities=24%  Similarity=0.316  Sum_probs=163.3

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.||++..  +|+.||||+++         ..+.+|+.++++++||||+++++++.+. +..++||||+++|+|.+++..
T Consensus        51 g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~-~~~~lv~e~~~~g~L~~~~~~  129 (494)
T 3lij_A           51 GEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDK-RNYYLVMECYKGGELFDEIIH  129 (494)
T ss_dssp             -EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECS-SEEEEEEECCCSCBHHHHHHH
T ss_pred             EEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeC-CEEEEEEecCCCCcHHHHHHH
Confidence            58999998  68999999985         3477899999999999999999998754 479999999999999998876


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC---CcEEEeecCCCCCCC------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR---FKAKIANFSLAAPAT------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~---~~~kl~DFGla~~~~------  482 (615)
                      ..          .+++..+..++.|++.||.|||+++   |+||||||+|||++.+   +.+||+|||+++...      
T Consensus       130 ~~----------~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~~~  196 (494)
T 3lij_A          130 RM----------KFNEVDAAVIIKQVLSGVTYLHKHN---IVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMK  196 (494)
T ss_dssp             HS----------SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTBCBC
T ss_pred             cC----------CCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCcccc
Confidence            43          3899999999999999999999998   9999999999999764   559999999985431      


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ..++.++|||||||++|||++|+.||......+   ....+.             .....  ...
T Consensus       197 ~~~gt~~y~aPE~l~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~---~~~~i~-------------~~~~~--~~~  258 (494)
T 3lij_A          197 ERLGTAYYIAPEVLRKKYDEKCDVWSIGVILFILLAGYPPFGGQTDQE---ILRKVE-------------KGKYT--FDS  258 (494)
T ss_dssp             CCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHHHHH-------------HTCCC--CCS
T ss_pred             ccCCCcCeeCHHHHcccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHH-------------hCCCC--CCc
Confidence                           124678999999999999999999997644211   111000             00000  000


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .........+.+|+..||+.||.+|||+.|++++
T Consensus       259 ~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h  292 (494)
T 3lij_A          259 PEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEH  292 (494)
T ss_dssp             GGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred             hhcccCCHHHHHHHHHHCCCChhhCccHHHHhcC
Confidence            0011223457899999999999999999999875

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=6.9e-32  Score=287.83  Aligned_cols=233  Identities=21%  Similarity=0.289  Sum_probs=167.8

Q ss_pred             cccccccccc----ceEEEEEE--CCeEEEEEEccHH---HHHHHHHHHhcCCCCcccEEEEEEcCC-------------
Q 047629          333 MNLSEHYSIG----KSVYRATI--DGKVLAVKKIKED---VTEELRILQRINHANLVKLMGVSSDSQ-------------  390 (615)
Q Consensus       333 ~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~~---~~~Ei~~l~~l~H~niv~l~g~~~~~~-------------  390 (615)
                      ..|.....+|    |.||++..  +|+.||||++..+   ..+|+++|++++|+||+++++++....             
T Consensus         7 ~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~~~~~   86 (383)
T 3eb0_A            7 KKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQPPDDH   86 (383)
T ss_dssp             TTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTSCCHHHHHHTTCCCTTBCCEEEEEEEC--------------
T ss_pred             ceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcchHHHHHHHHHHcCCCCccchhheeeecCccccccccccccc
Confidence            3444444454    58999987  7899999998643   458999999999999999999885321             


Q ss_pred             ------------------------CcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHh
Q 047629          391 ------------------------GNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE  446 (615)
Q Consensus       391 ------------------------~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~  446 (615)
                                              ...++||||++ |+|.+.+.......      ..+++..+..++.|++.||.|||+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~------~~l~~~~~~~i~~qi~~aL~~LH~  159 (383)
T 3eb0_A           87 NKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSG------RSIPMNLISIYIYQLFRAVGFIHS  159 (383)
T ss_dssp             -----------------------CCEEEEEECCCS-EEHHHHHHHHHHTT------CCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence                                    23789999998 58877775421100      138999999999999999999999


Q ss_pred             CCCCCeEecCCCCCceeeC-CCCcEEEeecCCCCCCC-----------------------CCCCCcccchhHHHHHHHHH
Q 047629          447 HAQPSIVHRDIRTNNIQLD-SRFKAKIANFSLAAPAT-----------------------NDVMPKFDVFAFGVVLLELL  502 (615)
Q Consensus       447 ~~~~~ivHrDlk~~NILld-~~~~~kl~DFGla~~~~-----------------------~~~~~k~DV~SfGvvl~Ell  502 (615)
                      ++   |+||||||+|||++ .++.+||+|||+++...                       ..++.++|||||||++|||+
T Consensus       160 ~g---i~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell  236 (383)
T 3eb0_A          160 LG---ICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELI  236 (383)
T ss_dssp             TT---EECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHH
T ss_pred             Cc---CccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHH
Confidence            98   99999999999998 68899999999996421                       12567899999999999999


Q ss_pred             cCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCC--------cCC-----CCCChHHHHHHHHHHHHhhhcCC
Q 047629          503 SGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDP--------NLE-----SFYPIDGALSLATLARACTMDKS  569 (615)
Q Consensus       503 tG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp--------~l~-----~~~~~~~~~~l~~l~~~C~~~dP  569 (615)
                      +|+.||......+.   ...+...+....  .+.+.. +++        .+.     ..++......+.+|+.+||+.||
T Consensus       237 ~g~~pf~~~~~~~~---~~~i~~~~g~p~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP  310 (383)
T 3eb0_A          237 LGKPLFSGETSIDQ---LVRIIQIMGTPT--KEQMIR-MNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEP  310 (383)
T ss_dssp             HSSCSSCCSSHHHH---HHHHHHHHCCCC--HHHHHH-HCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSG
T ss_pred             hCCCCCCCCChHHH---HHHHHHHhCCCC--HHHHHH-hCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCCh
Confidence            99999976442221   111111111000  000110 111        110     11223344568999999999999


Q ss_pred             CCCCCHHHHHHH
Q 047629          570 LSRPNMAEVVFN  581 (615)
Q Consensus       570 ~~RPsm~ev~~~  581 (615)
                      .+|||+.|++++
T Consensus       311 ~~R~t~~e~l~h  322 (383)
T 3eb0_A          311 DLRINPYEAMAH  322 (383)
T ss_dssp             GGSCCHHHHHTS
T ss_pred             hhCCCHHHHhcC
Confidence            999999999874

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.97  E-value=6.3e-31  Score=291.55  Aligned_cols=219  Identities=18%  Similarity=0.271  Sum_probs=170.0

Q ss_pred             ccccccccc----ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEE
Q 047629          334 NLSEHYSIG----KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVY  397 (615)
Q Consensus       334 ~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~  397 (615)
                      +|.....+|    |.||++..  +|+.||+|++++          .+.+|+++|.+++||||+++++++.+. ...++||
T Consensus       186 ~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~-~~l~lVm  264 (543)
T 3c4z_A          186 WFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETK-TDLCLVM  264 (543)
T ss_dssp             GEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEEEE
T ss_pred             heEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeC-CEEEEEE
Confidence            344444455    58999998  689999999863          356799999999999999999998754 4799999


Q ss_pred             eecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCC
Q 047629          398 EYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSL  477 (615)
Q Consensus       398 E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGl  477 (615)
                      ||+++|+|.+++.......      ..+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+
T Consensus       265 E~~~gg~L~~~l~~~~~~~------~~l~e~~~~~~~~qi~~aL~~LH~~g---IvHrDLKP~NILl~~~g~vkL~DFGl  335 (543)
T 3c4z_A          265 TIMNGGDIRYHIYNVDEDN------PGFQEPRAIFYTAQIVSGLEHLHQRN---IIYRDLKPENVLLDDDGNVRISDLGL  335 (543)
T ss_dssp             CCCTTCBHHHHHHTSSTTS------CSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCTT
T ss_pred             EeccCCCHHHHHHHhhccc------ccccHHHHHHHHHHHHHHHHHHHHcC---CcccCCChHHEEEeCCCCEEEeecce
Confidence            9999999999997643211      13899999999999999999999998   99999999999999999999999999


Q ss_pred             CCCCC-----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHH
Q 047629          478 AAPAT-----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKRE  534 (615)
Q Consensus       478 a~~~~-----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~  534 (615)
                      ++...                       ..++.++|||||||++|||++|+.||...........   +..         
T Consensus       336 a~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~---~~~---------  403 (543)
T 3c4z_A          336 AVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKE---LKQ---------  403 (543)
T ss_dssp             CEECCTTCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHH---HHH---------
T ss_pred             eeeccCCCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHH---HHH---------
Confidence            85431                       1245689999999999999999999976543211110   100         


Q ss_pred             HHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCH-----HHHHH
Q 047629          535 ERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNM-----AEVVF  580 (615)
Q Consensus       535 ~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm-----~ev~~  580 (615)
                      ..+.    ..  ..++......+.+|+..||+.||.+||++     .||.+
T Consensus       404 ~i~~----~~--~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~  448 (543)
T 3c4z_A          404 RVLE----QA--VTYPDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRT  448 (543)
T ss_dssp             HHHH----CC--CCCCTTSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHT
T ss_pred             HHhh----cc--cCCCcccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHc
Confidence            0011    11  12334445567899999999999999975     56654

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.97  E-value=4.4e-31  Score=291.93  Aligned_cols=207  Identities=24%  Similarity=0.326  Sum_probs=163.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeec
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYA  400 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~  400 (615)
                      |.||++..  +|+.||||+++                    +.+.+|+.+|++++||||+++++++.+. +..++||||+
T Consensus        50 g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~-~~~~lv~e~~  128 (504)
T 3q5i_A           50 GEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDK-KYFYLVTEFY  128 (504)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEEEECS-SEEEEEEECC
T ss_pred             eEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcC-CEEEEEEecC
Confidence            58999997  67899999874                    2367899999999999999999998754 4799999999


Q ss_pred             CCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC---cEEEeecCC
Q 047629          401 ENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF---KAKIANFSL  477 (615)
Q Consensus       401 ~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~---~~kl~DFGl  477 (615)
                      ++|+|.+++....          .+++..+..++.|++.||.|||+++   |+||||||+|||++.++   .+||+|||+
T Consensus       129 ~gg~L~~~l~~~~----------~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~  195 (504)
T 3q5i_A          129 EGGELFEQIINRH----------KFDECDAANIMKQILSGICYLHKHN---IVHRDIKPENILLENKNSLLNIKIVDFGL  195 (504)
T ss_dssp             TTCBHHHHHHHHS----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESSTTCCSSEEECCCTT
T ss_pred             CCCcHHHHHHHcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCcHHHEEEecCCCCccEEEEECCC
Confidence            9999999997643          2899999999999999999999998   99999999999998775   699999999


Q ss_pred             CCCCC---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHH
Q 047629          478 AAPAT---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREER  536 (615)
Q Consensus       478 a~~~~---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  536 (615)
                      ++...                     ..++.++|||||||++|||++|+.||......+   ....+.            
T Consensus       196 a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~---~~~~i~------------  260 (504)
T 3q5i_A          196 SSFFSKDYKLRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQD---IIKKVE------------  260 (504)
T ss_dssp             CEECCTTSCBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHHHHH------------
T ss_pred             CEEcCCCCccccccCCcCCCCHHHhccCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHH------------
Confidence            86432                     124678999999999999999999997644211   111000            


Q ss_pred             HhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          537 LRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       537 ~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       .....  ............+.+|+..|++.||.+|||+.|++++
T Consensus       261 -~~~~~--~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h  302 (504)
T 3q5i_A          261 -KGKYY--FDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNS  302 (504)
T ss_dssp             -HCCCC--CCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             -cCCCC--CCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence             00000  0000001123457899999999999999999999875

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.97  E-value=1e-30  Score=283.37  Aligned_cols=152  Identities=25%  Similarity=0.441  Sum_probs=131.4

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCC----CcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQ----GNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~----~~~~lV~E~~~~GsL~~  407 (615)
                      |.||++..  +|+.||||+++         +.+.+|+++|++++|+||+++++++....    ...++||||++ |+|.+
T Consensus        40 g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~-~~L~~  118 (432)
T 3n9x_A           40 GYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDELYIVLEIAD-SDLKK  118 (432)
T ss_dssp             EEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEEECCS-EEHHH
T ss_pred             EEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCeEEEEEecCC-cCHHH
Confidence            58999987  68999999985         34678999999999999999999986543    36899999996 69999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++....          .+++..+..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+++...     
T Consensus       119 ~~~~~~----------~l~~~~~~~i~~qil~aL~~LH~~g---ivHrDlkp~NILl~~~~~~kL~DFGla~~~~~~~~~  185 (432)
T 3n9x_A          119 LFKTPI----------FLTEEHIKTILYNLLLGENFIHESG---IIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDT  185 (432)
T ss_dssp             HHHSSC----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEEC------
T ss_pred             HHhccC----------CCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHeEECCCCCEEEccCCCcccccccccc
Confidence            997643          3899999999999999999999998   9999999999999999999999999986421     


Q ss_pred             -----------------------------------------CCCCCcccchhHHHHHHHHHcCCCCC
Q 047629          483 -----------------------------------------NDVMPKFDVFAFGVVLLELLSGKKAT  508 (615)
Q Consensus       483 -----------------------------------------~~~~~k~DV~SfGvvl~ElltG~~p~  508 (615)
                                                               ..++.++|||||||++|||++|..|+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~  252 (432)
T 3n9x_A          186 NIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSH  252 (432)
T ss_dssp             -------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTT
T ss_pred             cccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccc
Confidence                                                     12456899999999999999865444

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.97  E-value=2.7e-31  Score=274.57  Aligned_cols=221  Identities=23%  Similarity=0.343  Sum_probs=161.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEc-------------CCCcEEEEEeec
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSD-------------SQGNRFLVYEYA  400 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~-------------~~~~~~lV~E~~  400 (615)
                      |.||+|..  +|+.||||++.       +.+.+|++++++++||||+++++++..             .....++||||+
T Consensus        25 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~  104 (320)
T 2i6l_A           25 GLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYM  104 (320)
T ss_dssp             -CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----CCSCSEEEEEEECC
T ss_pred             eEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccccccccCceeEEeecc
Confidence            48999998  48999999874       357789999999999999999998742             223579999999


Q ss_pred             CCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeC-CCCcEEEeecCCCC
Q 047629          401 ENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD-SRFKAKIANFSLAA  479 (615)
Q Consensus       401 ~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld-~~~~~kl~DFGla~  479 (615)
                      + |+|.+++...           .+++..+..++.|++.||+|||+++   |+||||||+|||++ +++.+||+|||+++
T Consensus       105 ~-~~L~~~~~~~-----------~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~  169 (320)
T 2i6l_A          105 E-TDLANVLEQG-----------PLLEEHARLFMYQLLRGLKYIHSAN---VLHRDLKPANLFINTEDLVLKIGDFGLAR  169 (320)
T ss_dssp             S-EEHHHHHTTC-----------CCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEEETTTTEEEECCCTTCB
T ss_pred             C-CCHHHHhhcC-----------CccHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCCCeEEEccCcccc
Confidence            8 6999999642           2889999999999999999999998   99999999999997 56799999999986


Q ss_pred             CCC---------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHh-HHH
Q 047629          480 PAT---------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLK-VEE  531 (615)
Q Consensus       480 ~~~---------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~-~~~  531 (615)
                      ...                           ..++.++||||||+++|||++|+.||......+.   ...+..... ...
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~---~~~~~~~~~~~~~  246 (320)
T 2i6l_A          170 IMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQ---MQLILESIPVVHE  246 (320)
T ss_dssp             CC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH---HHHHHHHSCCCCH
T ss_pred             ccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHH---HHHHHHhcCCCch
Confidence            531                           1245578999999999999999999976542111   111111100 000


Q ss_pred             HHHHHHhhh--------c-CCcCC-CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          532 KREERLRNW--------M-DPNLE-SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       532 ~~~~~~~~~--------~-dp~l~-~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .....+...        . .+... ..........+.+++.+||+.||++|||+.|++++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  306 (320)
T 2i6l_A          247 EDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSH  306 (320)
T ss_dssp             HHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             hhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCC
Confidence            000011100        0 01000 00111234568999999999999999999999875

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.97  E-value=8.9e-31  Score=283.65  Aligned_cols=157  Identities=20%  Similarity=0.304  Sum_probs=135.1

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhc------CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGKVLAVKKIK------EDVTEELRILQRI------NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l------~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||+|..  +|+.||||+++      ..+.+|+.++..+      +|+||+++++++... +..++||||+. |+|.++
T Consensus       111 g~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~-~~~~lv~e~~~-~~L~~~  188 (429)
T 3kvw_A          111 GQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFR-NHICMTFELLS-MNLYEL  188 (429)
T ss_dssp             EEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEET-TEEEEEECCCC-CBHHHH
T ss_pred             EEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccC-CeEEEEEeccC-CCHHHH
Confidence            58999987  58999999985      3466799998887      577999999998754 47999999996 699999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCc--EEEeecCCCCCCC----
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK--AKIANFSLAAPAT----  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~--~kl~DFGla~~~~----  482 (615)
                      +......        .+++..+..++.||+.||+|||+++   |+||||||+|||++.++.  +||+|||+++...    
T Consensus       189 l~~~~~~--------~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~~~~  257 (429)
T 3kvw_A          189 IKKNKFQ--------GFSLPLVRKFAHSILQCLDALHKNR---IIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRVY  257 (429)
T ss_dssp             HHHTTTC--------CCCHHHHHHHHHHHHHHHHHHHHHT---EECSCCSGGGEEESSTTSCCEEECCCTTCEETTCCCC
T ss_pred             HHhccCC--------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEEccCCCcceEEeecccceecCCccc
Confidence            9875432        3899999999999999999999998   999999999999999887  9999999985432    


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCC
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTE  512 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~  512 (615)
                                      ..++.++|||||||++|||++|+.||....
T Consensus       258 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~  303 (429)
T 3kvw_A          258 TYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGED  303 (429)
T ss_dssp             SSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             ccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCC
Confidence                            125678999999999999999999997654

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.97  E-value=8.2e-31  Score=277.51  Aligned_cols=220  Identities=15%  Similarity=0.161  Sum_probs=170.0

Q ss_pred             ccccccccc----ceEEEEE-------ECCeEEEEEEcc----HHHHHHHHHHHhcC---CCCcccEEEEEEcCCCcEEE
Q 047629          334 NLSEHYSIG----KSVYRAT-------IDGKVLAVKKIK----EDVTEELRILQRIN---HANLVKLMGVSSDSQGNRFL  395 (615)
Q Consensus       334 ~~~~~~~iG----~~Vy~~~-------~~g~~vAvK~~~----~~~~~Ei~~l~~l~---H~niv~l~g~~~~~~~~~~l  395 (615)
                      .|.....+|    |.||+|.       .+++.||||+++    .++..|++++.+++   |+||+++++++... +..++
T Consensus        66 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~-~~~~l  144 (365)
T 3e7e_A           66 LVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQ-NGSVL  144 (365)
T ss_dssp             EEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCCHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECS-SCEEE
T ss_pred             EEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCChhHHHHHHHHHHHhhhhhhhhhhhhheeeecC-CCcEE
Confidence            344444454    4899993       268999999986    46788999999887   99999999998765 47899


Q ss_pred             EEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC---------
Q 047629          396 VYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS---------  466 (615)
Q Consensus       396 V~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~---------  466 (615)
                      ||||+++|+|.+++.......     ...++|..++.|+.|++.||+|||+++   |+||||||+|||++.         
T Consensus       145 v~e~~~~g~L~~~l~~~~~~~-----~~~l~~~~~~~i~~qi~~~L~~lH~~~---ivHrDiKp~NIll~~~~~~~~~~~  216 (365)
T 3e7e_A          145 VGELYSYGTLLNAINLYKNTP-----EKVMPQGLVISFAMRMLYMIEQVHDCE---IIHGDIKPDNFILGNGFLEQDDED  216 (365)
T ss_dssp             EECCCCSCBHHHHHHHHHTST-----TCSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECGGGTCC----
T ss_pred             EEeccCCCcHHHHHHHhhccc-----ccCCCHHHHHHHHHHHHHHHHHHhhCC---eecCCCCHHHEEecccccCccccc
Confidence            999999999999997522110     013999999999999999999999998   999999999999998         


Q ss_pred             --CCcEEEeecCCCCCCC-------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHH
Q 047629          467 --RFKAKIANFSLAAPAT-------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVL  519 (615)
Q Consensus       467 --~~~~kl~DFGla~~~~-------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l  519 (615)
                        ++.+||+|||+++...                         ..++.++|||||||++|||++|+.|+.....+..   
T Consensus       217 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~---  293 (365)
T 3e7e_A          217 DLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGEC---  293 (365)
T ss_dssp             --CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEE---
T ss_pred             cccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCce---
Confidence              8999999999994321                         1256789999999999999999999865432110   


Q ss_pred             HHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCC-CCHHHHHHHHHhcccc
Q 047629          520 WKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSR-PNMAEVVFNLSVLTQS  588 (615)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~R-Psm~ev~~~L~~l~~~  588 (615)
                                          .++..+. .++  ....+.+++..|++.+|.+| |+++++.+.|+.+.+.
T Consensus       294 --------------------~~~~~~~-~~~--~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~  340 (365)
T 3e7e_A          294 --------------------KPEGLFR-RLP--HLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQ  340 (365)
T ss_dssp             --------------------EECSCCT-TCS--SHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             --------------------eechhcc-ccC--cHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHH
Confidence                                0111111 112  13356789999999999998 6788888888766543

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.97  E-value=1.2e-30  Score=268.48  Aligned_cols=205  Identities=22%  Similarity=0.306  Sum_probs=161.6

Q ss_pred             ceEEEEEE--CCeEEEEEEccH-----------HHHHHHHHHHhcCCCCcccEEEEEEcC-CCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGKVLAVKKIKE-----------DVTEELRILQRINHANLVKLMGVSSDS-QGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~-----------~~~~Ei~~l~~l~H~niv~l~g~~~~~-~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||++..  +|+.||||.++.           .+.+|++++++++|+||+++++++.+. ....++||||+++| |.++
T Consensus        19 g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~   97 (305)
T 2wtk_C           19 GKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEYCVCG-MQEM   97 (305)
T ss_dssp             CEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEEEEEECCSEE-HHHH
T ss_pred             eEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEEEEehhccCC-HHHH
Confidence            58999987  688999999853           367899999999999999999998533 34689999999876 7777


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-----
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-----  483 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-----  483 (615)
                      +......        .+++..+..++.|++.||.|||+++   ++||||||+||+++.++.+||+|||++.....     
T Consensus        98 ~~~~~~~--------~~~~~~~~~~~~qi~~al~~LH~~~---i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~  166 (305)
T 2wtk_C           98 LDSVPEK--------RFPVCQAHGYFCQLIDGLEYLHSQG---IVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADD  166 (305)
T ss_dssp             HHHSTTC--------SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEECCTTCSSC
T ss_pred             HHhCccc--------ccCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCcccEEEcCCCcEEeeccccccccCcccccc
Confidence            7654321        3899999999999999999999998   99999999999999999999999999864311     


Q ss_pred             ----------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          484 ----------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       484 ----------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                            ..+.++||||||+++|||++|+.|+.....   .....              .+.. .
T Consensus       167 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~---~~~~~--------------~i~~-~  228 (305)
T 2wtk_C          167 TCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNI---YKLFE--------------NIGK-G  228 (305)
T ss_dssp             EECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSH---HHHHH--------------HHHH-C
T ss_pred             ccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchH---HHHHH--------------HHhc-C
Confidence                                  014479999999999999999999975431   11110              0111 0


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ...    .+.+....+.+++.+||+.||.+|||++|++++
T Consensus       229 ~~~----~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  264 (305)
T 2wtk_C          229 SYA----IPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH  264 (305)
T ss_dssp             CCC----CCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             CCC----CCCccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            111    223334567899999999999999999999986

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.97  E-value=6.4e-31  Score=300.02  Aligned_cols=212  Identities=22%  Similarity=0.322  Sum_probs=169.8

Q ss_pred             cccccccccc----ceEEEEEE--CCeEEEEEEccHH----------HHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEE
Q 047629          333 MNLSEHYSIG----KSVYRATI--DGKVLAVKKIKED----------VTEELRILQRI-NHANLVKLMGVSSDSQGNRFL  395 (615)
Q Consensus       333 ~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~~~----------~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~l  395 (615)
                      .+|.....||    |.||++..  +|+.||||+++++          +..|..+|..+ +|+||+++++++.+ .+.++|
T Consensus       341 ~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~-~~~~~l  419 (674)
T 3pfq_A          341 TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQT-MDRLYF  419 (674)
T ss_dssp             TTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBC-SSEEEE
T ss_pred             cceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEe-CCEEEE
Confidence            3455455555    58999998  6889999998743          56788999887 79999999998764 447999


Q ss_pred             EEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeec
Q 047629          396 VYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF  475 (615)
Q Consensus       396 V~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DF  475 (615)
                      ||||+++|+|.+++....          .+++..+..++.||+.||+|||+++   |+||||||+||||+.++.+||+||
T Consensus       420 V~E~~~gg~L~~~l~~~~----------~~~~~~~~~~~~qi~~aL~~LH~~g---IiHrDLKp~NILl~~~g~ikL~DF  486 (674)
T 3pfq_A          420 VMEYVNGGDLMYHIQQVG----------RFKEPHAVFYAAEIAIGLFFLQSKG---IIYRDLKLDNVMLDSEGHIKIADF  486 (674)
T ss_dssp             EEECCCSCBHHHHHHHHS----------SCCHHHHHHHHHHHHHHHHHHHHTS---EECCCCCSTTEEECSSSCEEECCC
T ss_pred             EEeCcCCCcHHHHHHhcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---eEeccCChhhEEEcCCCcEEEeec
Confidence            999999999999998654          2899999999999999999999998   999999999999999999999999


Q ss_pred             CCCCCCC-----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHH
Q 047629          476 SLAAPAT-----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEK  532 (615)
Q Consensus       476 Gla~~~~-----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~  532 (615)
                      |+++...                       ..++.++|||||||+||||++|+.||......   .+             
T Consensus       487 Gla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~---~~-------------  550 (674)
T 3pfq_A          487 GMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED---EL-------------  550 (674)
T ss_dssp             TTCEECCCTTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HH-------------
T ss_pred             ceeeccccCCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHH---HH-------------
Confidence            9986421                       12567899999999999999999999764321   11             


Q ss_pred             HHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCH-----HHHHH
Q 047629          533 REERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNM-----AEVVF  580 (615)
Q Consensus       533 ~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm-----~ev~~  580 (615)
                          +..++...  ..+|......+.+|+..||+.||.+||++     +||.+
T Consensus       551 ----~~~i~~~~--~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~  597 (674)
T 3pfq_A          551 ----FQSIMEHN--VAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE  597 (674)
T ss_dssp             ----HHHHHSSC--CCCCTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHS
T ss_pred             ----HHHHHhCC--CCCCccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhc
Confidence                11111111  13444555678999999999999999997     67665

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.97  E-value=6e-31  Score=280.55  Aligned_cols=227  Identities=20%  Similarity=0.242  Sum_probs=165.4

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhcC--------CCCcccEEEEEEc---CCCcEEEEEeecCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK------EDVTEELRILQRIN--------HANLVKLMGVSSD---SQGNRFLVYEYAENG  403 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l~--------H~niv~l~g~~~~---~~~~~~lV~E~~~~G  403 (615)
                      |.||++..  +|+.||||+++      +.+.+|+.++++++        |+||+++++++..   .....++||||+ +|
T Consensus        51 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~lv~e~~-~~  129 (397)
T 1wak_A           51 STVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVL-GH  129 (397)
T ss_dssp             EEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEEEEEECCC-CC
T ss_pred             eeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCCCceEEEEEecc-Cc
Confidence            58999987  68999999986      34678999999985        7889999998762   223589999999 56


Q ss_pred             CHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhC-CCCCeEecCCCCCceeeCCCC--------------
Q 047629          404 SLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH-AQPSIVHRDIRTNNIQLDSRF--------------  468 (615)
Q Consensus       404 sL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-~~~~ivHrDlk~~NILld~~~--------------  468 (615)
                      +|.+++......        .+++..+..++.|++.||.|||++ +   |+||||||+|||++.++              
T Consensus       130 ~l~~~~~~~~~~--------~~~~~~~~~i~~qi~~aL~~lH~~~g---ivHrDikp~NIll~~~~~~~~~~~~~~~~~~  198 (397)
T 1wak_A          130 HLLKWIIKSNYQ--------GLPLPCVKKIIQQVLQGLDYLHTKCR---IIHTDIKPENILLSVNEQYIRRLAAEATEWQ  198 (397)
T ss_dssp             BHHHHHHHTTTS--------CCCHHHHHHHHHHHHHHHHHHHHTTC---EECCCCSGGGEEECCCHHHHHHHHHHHC---
T ss_pred             cHHHHHHhcccC--------CCCHHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHeeEeccchhhhhhhhhhHHHh
Confidence            777776554321        389999999999999999999998 7   99999999999999775              


Q ss_pred             -----------------------------------cEEEeecCCCCCCC--------------------CCCCCcccchh
Q 047629          469 -----------------------------------KAKIANFSLAAPAT--------------------NDVMPKFDVFA  493 (615)
Q Consensus       469 -----------------------------------~~kl~DFGla~~~~--------------------~~~~~k~DV~S  493 (615)
                                                         .+||+|||+++...                    ..++.++||||
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Diws  278 (397)
T 1wak_A          199 RSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWS  278 (397)
T ss_dssp             ------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCSCSCCSCGGGCCHHHHHTSCCCTHHHHHH
T ss_pred             hcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccccCccCCCCCcccCChhhcCCCCCcHHHHHH
Confidence                                               89999999985431                    22567899999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCChhH---HHHHHHHHHHhHH---HHHHHH-HhhhcCCc--C-----------------CC
Q 047629          494 FGVVLLELLSGKKATRTTENGKTA---VLWKEIREVLKVE---EKREER-LRNWMDPN--L-----------------ES  547 (615)
Q Consensus       494 fGvvl~ElltG~~p~~~~~~~~~~---~l~~~~~~~~~~~---~~~~~~-~~~~~dp~--l-----------------~~  547 (615)
                      |||++|||++|+.||......+..   .....+...+...   ...... ..++.+..  +                 ..
T Consensus       279 lG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (397)
T 1wak_A          279 TACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKY  358 (397)
T ss_dssp             HHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHHHHTS
T ss_pred             HHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcchhHhhhhhc
Confidence            999999999999999765432211   1111111111000   000000 00001000  0                 01


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..+.+....+.+|+.+||+.||++|||+.|++++
T Consensus       359 ~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  392 (397)
T 1wak_A          359 EWSQEEAAGFTDFLLPMLELIPEKRATAAECLRH  392 (397)
T ss_dssp             CCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTS
T ss_pred             ccchhhHHHHHHHHHHHhccChhhcCCHHHHhhC
Confidence            3456677789999999999999999999999864

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.97  E-value=1.9e-31  Score=288.19  Aligned_cols=223  Identities=26%  Similarity=0.356  Sum_probs=161.3

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH---HHHHHHHHHhcCCCCcccEEEEEEcCC---C--cEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIKED---VTEELRILQRINHANLVKLMGVSSDSQ---G--NRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~---~~~Ei~~l~~l~H~niv~l~g~~~~~~---~--~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||+|..  +|+.||||++..+   ..+|+++|++++|+||+++++++....   .  .+++||||+++ +|.+.+...
T Consensus        68 g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~  146 (420)
T 1j1b_A           68 GVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPE-TVYRVARHY  146 (420)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECCTTSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEECCCE-EHHHHHHHH
T ss_pred             EEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeehhcccc-cHHHHHHHH
Confidence            58999998  6899999998632   457999999999999999999875321   1  26799999985 666665431


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC-CcEEEeecCCCCCCC---------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR-FKAKIANFSLAAPAT---------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-~~~kl~DFGla~~~~---------  482 (615)
                      ....      ..+++..+..++.||+.||.|||+++   |+||||||+|||++.+ +.+||+|||+++...         
T Consensus       147 ~~~~------~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~~  217 (420)
T 1j1b_A          147 SRAK------QTLPVIYVKLYMYQLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYI  217 (420)
T ss_dssp             HHTT------CCCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCC
T ss_pred             hhcc------CCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChhhEEEeCCCCeEEeccchhhhhcccCCCceeee
Confidence            1000      13899999999999999999999998   9999999999999965 678999999996421         


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC---
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL---  545 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l---  545 (615)
                                    ..++.++|||||||++|||++|+.||......+.  +.. +...+...  ..+.+.+ +++..   
T Consensus       218 ~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~--l~~-i~~~lg~p--~~~~~~~-~~~~~~~~  291 (420)
T 1j1b_A          218 CSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQ--LVE-IIKVLGTP--TREQIRE-MNPNYTEF  291 (420)
T ss_dssp             SCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHH-HHHHHCSC--CHHHHHH-HCSCCCCC
T ss_pred             eCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHH--HHH-HHHHhCCC--CHHHHHh-hChhhhhh
Confidence                          1256789999999999999999999976442211  111 11111100  0111111 11111   


Q ss_pred             -----CC-----CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          546 -----ES-----FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       546 -----~~-----~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                           ..     .++......+.+|+.+||+.||.+||++.|++++
T Consensus       292 ~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~h  337 (420)
T 1j1b_A          292 KFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAH  337 (420)
T ss_dssp             CCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             ccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCC
Confidence                 10     0122334568999999999999999999999875

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.97  E-value=8.3e-31  Score=271.15  Aligned_cols=205  Identities=21%  Similarity=0.369  Sum_probs=164.6

Q ss_pred             ceEEEEEE-CCeEEEEEEcc---------HHHHHHHHHHHhcC--CCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI-DGKVLAVKKIK---------EDVTEELRILQRIN--HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~---------~~~~~Ei~~l~~l~--H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++.. +|+.||||.+.         ..+.+|++++.+++  |+||+++++++.+. +..++||| +.+|+|.+++.
T Consensus        42 g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~-~~~~lv~e-~~~~~L~~~l~  119 (313)
T 3cek_A           42 SKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITD-QYIYMVME-CGNIDLNSWLK  119 (313)
T ss_dssp             EEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECS-SEEEEEEC-CCSEEHHHHHH
T ss_pred             EEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecC-CEEEEEEe-cCCCcHHHHHH
Confidence            58999987 68999999884         34778999999996  59999999998764 47899999 56889999998


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ...          .+++.++..++.|++.||.|||+++   |+||||||+|||+++ +.+||+|||+++...        
T Consensus       120 ~~~----------~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~~~~~~~~  185 (313)
T 3cek_A          120 KKK----------SIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIVD-GMLKLIDFGIANQMQPDTTSVVK  185 (313)
T ss_dssp             HCS----------SCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEET-TEEEECCCSSSCC----------
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCcccEEEEC-CeEEEeeccccccccCccccccc
Confidence            654          3899999999999999999999998   999999999999965 899999999986431        


Q ss_pred             ----------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHH
Q 047629          483 ----------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKRE  534 (615)
Q Consensus       483 ----------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~  534 (615)
                                                  ..++.++||||||+++|||++|+.||.......                   
T Consensus       186 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~-------------------  246 (313)
T 3cek_A          186 DSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI-------------------  246 (313)
T ss_dssp             ----CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHH-------------------
T ss_pred             cCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHH-------------------
Confidence                                        123457899999999999999999997543211                   


Q ss_pred             HHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          535 ERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       535 ~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      ..+...+++.....++......+.+++.+||+.||.+||++.|+++.-
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h~  294 (313)
T 3cek_A          247 SKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHP  294 (313)
T ss_dssp             HHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred             HHHHHHHhcccccCCcccchHHHHHHHHHHccCCcccCcCHHHHhcCc
Confidence            112223334333334444455689999999999999999999999864

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.97  E-value=1.2e-30  Score=276.34  Aligned_cols=221  Identities=21%  Similarity=0.288  Sum_probs=165.4

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCC----CcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQ----GNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~----~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||++..  +|+.||||++.        ..+.+|++++.+++|+||+++++++....    ...++|+||++ |+|.++
T Consensus        41 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~iv~e~~~-~~L~~~  119 (364)
T 3qyz_A           41 GMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLME-TDLYKL  119 (364)
T ss_dssp             EEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEECCS-EEHHHH
T ss_pred             eEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceEEEEEcccC-cCHHHH
Confidence            58999987  68999999985        35778999999999999999999986432    35899999997 599999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      +...           .+++.++..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...      
T Consensus       120 l~~~-----------~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~  185 (364)
T 3qyz_A          120 LKTQ-----------HLSNDHICYFLYQILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHT  185 (364)
T ss_dssp             HHHC-----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBC
T ss_pred             HHhC-----------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCChHhEEECCCCCEEEEeCcceEecCCCCCcc
Confidence            9753           2899999999999999999999998   9999999999999999999999999985321      


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH---H-------
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE---E-------  531 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~---~-------  531 (615)
                                           ..++.++|||||||++|||++|+.||......+...   .+...+...   .       
T Consensus       186 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~  262 (364)
T 3qyz_A          186 GFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLN---HILGILGSPSQEDLNCIINL  262 (364)
T ss_dssp             CTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHH---HHHHHHCSCCHHHHHTCCCH
T ss_pred             ccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHH---HHHHHhCCCCHHHHHHhhhh
Confidence                                 114678999999999999999999997655333221   111111000   0       


Q ss_pred             HHHHHHhhhcCCcCC--CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          532 KREERLRNWMDPNLE--SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       532 ~~~~~~~~~~dp~l~--~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ...........+.-.  ..........+.+|+.+|++.||++|||+.|+++.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  314 (364)
T 3qyz_A          263 KARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  314 (364)
T ss_dssp             HHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             hHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            000001111000000  00011223467899999999999999999999985

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.97  E-value=1.5e-30  Score=273.58  Aligned_cols=221  Identities=17%  Similarity=0.267  Sum_probs=163.7

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcC----CCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDS----QGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~----~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||+|..  +|+.||||+++        ..+.+|++++++++|+||+++++++...    ....++||||++ |+|.++
T Consensus        25 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~  103 (353)
T 2b9h_A           25 GVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQELMQ-TDLHRV  103 (353)
T ss_dssp             EEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCEEEEECCCS-EEHHHH
T ss_pred             eEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceEEEEEeccC-ccHHHH
Confidence            58999998  58999999985        2467899999999999999999987543    146899999997 699999


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      +...           .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...      
T Consensus       104 ~~~~-----------~~~~~~~~~~~~qi~~~L~~LH~~~---ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~  169 (353)
T 2b9h_A          104 ISTQ-----------MLSDDHIQYFIYQTLRAVKVLHGSN---VIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADN  169 (353)
T ss_dssp             HHHC-----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTTCEECC------
T ss_pred             Hhhc-----------CCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEEcCCCcEEEEecccccccccccccc
Confidence            8753           2899999999999999999999998   9999999999999999999999999985421      


Q ss_pred             ----------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhH-----
Q 047629          483 ----------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV-----  529 (615)
Q Consensus       483 ----------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~-----  529 (615)
                                                  ..++.++|||||||++|||++|+.||......+...   .+......     
T Consensus       170 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~---~~~~~~~~~~~~~  246 (353)
T 2b9h_A          170 SEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLL---LIFGIIGTPHSDN  246 (353)
T ss_dssp             ----------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH---HHHHHHCCCCSTT
T ss_pred             cCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHH---HHHHHhCCCchhc
Confidence                                        124557999999999999999999997654221111   11111000     


Q ss_pred             ------HHHHHHHHhhhcC-CcC-CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          530 ------EEKREERLRNWMD-PNL-ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       530 ------~~~~~~~~~~~~d-p~l-~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                            .....+.+..... +.. ...........+.+|+.+||+.||++|||+.|++++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  306 (353)
T 2b9h_A          247 DLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEH  306 (353)
T ss_dssp             TTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             cccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence                  0000000110000 000 000011234467899999999999999999999885

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.97  E-value=5.7e-32  Score=287.17  Aligned_cols=213  Identities=11%  Similarity=0.030  Sum_probs=147.2

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhc--CCCCcccEE-------EEEEcCC-----------
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRI--NHANLVKLM-------GVSSDSQ-----------  390 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l--~H~niv~l~-------g~~~~~~-----------  390 (615)
                      |.||+|..  +|+.||||+++.          .+.+|+.++..+  +||||++++       +++....           
T Consensus        76 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~~~~~~~~~~~~~~~  155 (371)
T 3q60_A           76 SVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQ  155 (371)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEEETTSCSSSBCSCC-
T ss_pred             EEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehheecCCCCCeeeccCCc
Confidence            58999997  789999999863          355775545444  699988755       4443211           


Q ss_pred             -----CcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHH------HHHHHHHHHHHHHHHhCCCCCeEecCCCC
Q 047629          391 -----GNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQR------LRVALDVANGLQYMHEHAQPSIVHRDIRT  459 (615)
Q Consensus       391 -----~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~------~~i~~~ia~gL~yLH~~~~~~ivHrDlk~  459 (615)
                           ...++||||++ |+|.+++.....         .+.+..+      +.++.|++.||+|||+++   |+||||||
T Consensus       156 ~~~~~~~~~lv~e~~~-~~L~~~l~~~~~---------~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~---ivHrDikp  222 (371)
T 3q60_A          156 DDYAVANYLLLMPAAS-VDLELLFSTLDF---------VYVFRGDEGILALHILTAQLIRLAANLQSKG---LVHGHFTP  222 (371)
T ss_dssp             --CCEEEEEEEECCCS-EEHHHHHHHHHH---------SCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT---EEETTCSG
T ss_pred             ccceeeeEEEEecCCC-CCHHHHHHHhcc---------ccchhhhhhhhhHHHHHHHHHHHHHHHHHCC---CccCcCCH
Confidence                 23799999999 899999986432         2455555      788899999999999998   99999999


Q ss_pred             CceeeCCCCcEEEeecCCCCCCC----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhH
Q 047629          460 NNIQLDSRFKAKIANFSLAAPAT----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTA  517 (615)
Q Consensus       460 ~NILld~~~~~kl~DFGla~~~~----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~  517 (615)
                      +|||++.++.+||+|||+++...                      ..++.++|||||||++|||++|+.||.........
T Consensus       223 ~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~  302 (371)
T 3q60_A          223 DNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKG  302 (371)
T ss_dssp             GGEEECTTSCEEECCGGGEEETTCEEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTT
T ss_pred             HHEEECCCCCEEEEecceeeecCCCccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCccccc
Confidence            99999999999999999986432                      12467899999999999999999999765322110


Q ss_pred             HHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          518 VLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       518 ~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      . +.            ...........+...........+.+|+.+||+.||++|||+.|++++
T Consensus       303 ~-~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  353 (371)
T 3q60_A          303 S-WK------------RPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMET  353 (371)
T ss_dssp             C-CC------------BCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTS
T ss_pred             c-hh------------hhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            0 00            000000011111111112345568999999999999999999999864

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.97  E-value=1.1e-30  Score=266.72  Aligned_cols=207  Identities=26%  Similarity=0.318  Sum_probs=163.7

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.||++..  +|+.||||++.         ..+.+|++++++++||||+++++++.+. +..++|+||+++|+|.+++..
T Consensus        36 g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~  114 (287)
T 2wei_A           36 GEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDS-SSFYIVGELYTGGELFDEIIK  114 (287)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECS-SEEEEEECCCCSCBHHHHHHH
T ss_pred             EEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCC-CeEEEEEEccCCCCHHHHHHh
Confidence            58999998  68999999974         3477899999999999999999998754 478999999999999999875


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC---CcEEEeecCCCCCCCC-----
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR---FKAKIANFSLAAPATN-----  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~---~~~kl~DFGla~~~~~-----  483 (615)
                      ..          .+++.++..++.|++.||.|||+++   ++||||||+||+++.+   +.+||+|||+++....     
T Consensus       115 ~~----------~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~~~  181 (287)
T 2wei_A          115 RK----------RFSEHDAARIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMK  181 (287)
T ss_dssp             HS----------SCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSSCS
T ss_pred             cC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCChhhEEEecCCCcccEEEeccCcceeecCCCccc
Confidence            43          2899999999999999999999998   9999999999999764   4799999999864321     


Q ss_pred             ----------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          484 ----------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       484 ----------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                      .++.++||||||+++|||++|+.|+......   ....   ..          ........+. 
T Consensus       182 ~~~~~~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~---~~~~---~~----------~~~~~~~~~~-  244 (287)
T 2wei_A          182 DRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNEY---DILK---RV----------ETGKYAFDLP-  244 (287)
T ss_dssp             CHHHHHTTCCHHHHTTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHH---HH----------HHCCCCCCSG-
T ss_pred             cccCcccccChHHhcCCCCCchhhHhHHHHHHHHHhCCCCCCCCCHH---HHHH---HH----------HcCCCCCCch-
Confidence                            2467899999999999999999999754321   1110   00          0011111110 


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       ........+.+++.+||+.||.+|||+.|+++.
T Consensus       245 -~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h  277 (287)
T 2wei_A          245 -QWRTISDDAKDLIRKMLTFHPSLRITATQCLEH  277 (287)
T ss_dssp             -GGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             -hhhhcCHHHHHHHHHHcccChhhCcCHHHHhcC
Confidence             001223457899999999999999999999984

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.97  E-value=1.5e-30  Score=274.29  Aligned_cols=239  Identities=18%  Similarity=0.195  Sum_probs=166.6

Q ss_pred             HHHHHccccccccccc----ceEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCC---
Q 047629          327 VIMESTMNLSEHYSIG----KSVYRATI--DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQG---  391 (615)
Q Consensus       327 ~l~~at~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~---  391 (615)
                      ......++|.....+|    |.||+|..  +|+.||||++.      ....+|++.+.+++|+||+++++++.....   
T Consensus        17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~   96 (360)
T 3e3p_A           17 RSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDR   96 (360)
T ss_dssp             HHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCT
T ss_pred             hchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhcCCCCcccHHHhhhccccccc
Confidence            3445556666666666    58999997  58999999884      346778888899999999999999864321   


Q ss_pred             ---cEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHH--hCCCCCeEecCCCCCceeeCC
Q 047629          392 ---NRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMH--EHAQPSIVHRDIRTNNIQLDS  466 (615)
Q Consensus       392 ---~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH--~~~~~~ivHrDlk~~NILld~  466 (615)
                         ..++||||+++ +|.+.+.......      ..+++..+..++.|++.||.|||  +++   |+||||||+|||++.
T Consensus        97 ~~~~~~lv~e~~~~-~l~~~~~~~~~~~------~~~~~~~~~~~~~qi~~al~~lH~~~~~---ivH~Dlkp~NIll~~  166 (360)
T 3e3p_A           97 RDIYLNVVMEYVPD-TLHRCCRNYYRRQ------VAPPPILIKVFLFQLIRSIGCLHLPSVN---VCHRDIKPHNVLVNE  166 (360)
T ss_dssp             TCEEEEEEEECCSC-BHHHHHHHHHTTT------CCCCHHHHHHHHHHHHHHHHHHTSTTTC---CBCSCCCGGGEEEET
T ss_pred             cceeEEEEeecccc-cHHHHHHHHhhcc------cCCCHHHHHHHHHHHHHHHHHHhCCCCC---eecCcCCHHHEEEeC
Confidence               17899999986 5554443211000      13889999999999999999999  776   999999999999997


Q ss_pred             -CCcEEEeecCCCCCCC-----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHH
Q 047629          467 -RFKAKIANFSLAAPAT-----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKE  522 (615)
Q Consensus       467 -~~~~kl~DFGla~~~~-----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~  522 (615)
                       ++.+||+|||+++...                       ..++.++|||||||++|||++|+.||........   ...
T Consensus       167 ~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~---~~~  243 (360)
T 3e3p_A          167 ADGTLKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQ---LHE  243 (360)
T ss_dssp             TTTEEEECCCTTCBCCCTTSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH---HHH
T ss_pred             CCCcEEEeeCCCceecCCCCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHH---HHH
Confidence             8999999999996432                       1146789999999999999999999976542211   111


Q ss_pred             HHHHHhHHHHHHHHHhhhcCCcC----------------CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          523 IREVLKVEEKREERLRNWMDPNL----------------ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~dp~l----------------~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +...+....  ...+ ..+++..                ....+......+.+|+.+||+.||.+|||+.|++++
T Consensus       244 ~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  315 (360)
T 3e3p_A          244 IVRVLGCPS--REVL-RKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCH  315 (360)
T ss_dssp             HHHHHCCCC--HHHH-HHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             HHHHcCCCC--HHHH-HhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcC
Confidence            111111000  0011 1111110                011222345678999999999999999999999985

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.97  E-value=2.1e-30  Score=275.26  Aligned_cols=221  Identities=21%  Similarity=0.300  Sum_probs=161.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCC-----CcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQ-----GNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~-----~~~~lV~E~~~~GsL~  406 (615)
                      |.||++..  +|+.||||+++         ..+.+|+.++++++||||+++++++...+     ...++||||++ |+|.
T Consensus        39 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~  117 (371)
T 2xrw_A           39 GIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMD-ANLC  117 (371)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCEEEEEEECCS-EEHH
T ss_pred             EEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccceEEEEEcCC-CCHH
Confidence            58999987  68999999985         24678999999999999999999986533     25799999997 5788


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----  482 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----  482 (615)
                      +++..            .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...    
T Consensus       118 ~~~~~------------~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~  182 (371)
T 2xrw_A          118 QVIQM------------ELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM  182 (371)
T ss_dssp             HHHHS------------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCCCC---------
T ss_pred             HHHhh------------ccCHHHHHHHHHHHHHHHHHHHHCC---eecccCCHHHEEEcCCCCEEEEEeecccccccccc
Confidence            88852            2889999999999999999999998   9999999999999999999999999986532    


Q ss_pred             ------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH--HH---HHHHHhh
Q 047629          483 ------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE--EK---REERLRN  539 (615)
Q Consensus       483 ------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~--~~---~~~~~~~  539 (615)
                                        ..++.++|||||||++|||++|+.||......+   .+..+...+...  ..   ....+..
T Consensus       183 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~  259 (371)
T 2xrw_A          183 MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHID---QWNKVIEQLGTPCPEFMKKLQPTVRT  259 (371)
T ss_dssp             -------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHHHHHC-CCCCCHHHHTTSCHHHHH
T ss_pred             cCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHHhCCCCHHHHHHhhhHHHH
Confidence                              125678999999999999999999997644211   111111100000  00   0000000


Q ss_pred             hc--CCcCC----------------CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          540 WM--DPNLE----------------SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       540 ~~--dp~l~----------------~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      .+  .+...                .+.+......+.+|+.+|++.||.+|||++|++++-
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp  320 (371)
T 2xrw_A          260 YVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHP  320 (371)
T ss_dssp             HHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHSH
T ss_pred             HHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCCc
Confidence            00  01100                000112356789999999999999999999999863

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.97  E-value=1.5e-30  Score=271.03  Aligned_cols=226  Identities=17%  Similarity=0.218  Sum_probs=166.4

Q ss_pred             ceEEEEEE---CCeEEEEEEcc------HHHHHHHHHHHhcCCCC------cccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI---DGKVLAVKKIK------EDVTEELRILQRINHAN------LVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~---~g~~vAvK~~~------~~~~~Ei~~l~~l~H~n------iv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||++..   +|+.||||+++      +.+.+|++++.+++|+|      ++++++++.+. +..++||||+ +|+|.+
T Consensus        28 g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~-~~~~lv~e~~-~~~l~~  105 (339)
T 1z57_A           28 GKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHH-GHICIVFELL-GLSTYD  105 (339)
T ss_dssp             EEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEET-TEEEEEEECC-CCBHHH
T ss_pred             eEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccC-CcEEEEEcCC-CCCHHH
Confidence            58999986   68999999986      35778999999987654      99999998754 4899999999 889999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC-------------------CC
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS-------------------RF  468 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-------------------~~  468 (615)
                      ++......        .+++.++..++.|++.||+|||+++   |+||||||+|||++.                   ++
T Consensus       106 ~l~~~~~~--------~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~  174 (339)
T 1z57_A          106 FIKENGFL--------PFRLDHIRKMAYQICKSVNFLHSNK---LTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINP  174 (339)
T ss_dssp             HHHHTTTC--------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESCCCEEEEEC----CEEEEESCC
T ss_pred             HHHhcCCC--------CCcHHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHEEEeccccccccCCccccccccccCC
Confidence            99765431        3889999999999999999999998   999999999999988                   67


Q ss_pred             cEEEeecCCCCCCC--------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHh
Q 047629          469 KAKIANFSLAAPAT--------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLK  528 (615)
Q Consensus       469 ~~kl~DFGla~~~~--------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~  528 (615)
                      .+||+|||+++...                    ..++.++||||||+++|||++|+.||......+...........+.
T Consensus       175 ~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p  254 (339)
T 1z57_A          175 DIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGPLP  254 (339)
T ss_dssp             CEEECCCSSCEETTSCCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHHHHHHHHHCSCC
T ss_pred             CceEeeCcccccCccccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCC
Confidence            89999999986432                    1256789999999999999999999976543222111111100000


Q ss_pred             HHHHH---------------------HHHHhhhcCCcC-CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          529 VEEKR---------------------EERLRNWMDPNL-ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       529 ~~~~~---------------------~~~~~~~~dp~l-~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .....                     ...+.....+.. ....+......+.+|+.+||+.||.+|||+.|+++.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h  329 (339)
T 1z57_A          255 KHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKH  329 (339)
T ss_dssp             HHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             HHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhcC
Confidence            00000                     000000011100 011233456789999999999999999999999864

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.97  E-value=2.6e-30  Score=268.51  Aligned_cols=222  Identities=21%  Similarity=0.326  Sum_probs=164.3

Q ss_pred             ceEEEEEE---CCeEEEEEEcc---------HHHHHHHHHHHhc---CCCCcccEEEEEEc----CCCcEEEEEeecCCC
Q 047629          343 KSVYRATI---DGKVLAVKKIK---------EDVTEELRILQRI---NHANLVKLMGVSSD----SQGNRFLVYEYAENG  403 (615)
Q Consensus       343 ~~Vy~~~~---~g~~vAvK~~~---------~~~~~Ei~~l~~l---~H~niv~l~g~~~~----~~~~~~lV~E~~~~G  403 (615)
                      |.||++..   +|+.||||+++         ..+.+|+.+++++   +||||+++++++..    .....++||||++ |
T Consensus        25 g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~-~  103 (326)
T 1blx_A           25 GKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD-Q  103 (326)
T ss_dssp             EEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEEEEECCS-C
T ss_pred             EEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCCCceEEEEEecCC-C
Confidence            58999987   47899999885         2467888888777   89999999999862    2335899999998 6


Q ss_pred             CHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-
Q 047629          404 SLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-  482 (615)
Q Consensus       404 sL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-  482 (615)
                      +|.+++......        .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++... 
T Consensus       104 ~L~~~l~~~~~~--------~~~~~~~~~~~~qi~~~l~~lH~~g---i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~  172 (326)
T 1blx_A          104 DLTTYLDKVPEP--------GVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARIYSF  172 (326)
T ss_dssp             BHHHHHHHSCTT--------CSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECSCCSCCCCCG
T ss_pred             CHHHHHHhcccC--------CCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCCHHHeEEcCCCCEEEecCcccccccC
Confidence            999999765431        3899999999999999999999998   9999999999999999999999999986532 


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhh--
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRN--  539 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--  539 (615)
                                           ..++.++||||||+++|||++|+.||......+   ....+........  ......  
T Consensus       173 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---~~~~i~~~~~~~~--~~~~~~~~  247 (326)
T 1blx_A          173 QMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVD---QLGKILDVIGLPG--EEDWPRDV  247 (326)
T ss_dssp             GGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH---HHHHHHHHHCCCC--GGGSCTTC
T ss_pred             CCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHH---HHHHHHHHcCCCC--cccCcccc
Confidence                                 124678999999999999999999997644211   1111111100000  000000  


Q ss_pred             -----hcC---CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          540 -----WMD---PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       540 -----~~d---p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                           ...   ......+..+....+.+|+.+||+.||.+||++.|++++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  297 (326)
T 1blx_A          248 ALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSH  297 (326)
T ss_dssp             SSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             ccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence                 000   000011222344567899999999999999999999864

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.97  E-value=1e-30  Score=277.31  Aligned_cols=221  Identities=22%  Similarity=0.308  Sum_probs=155.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcC-----CCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDS-----QGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~-----~~~~~lV~E~~~~GsL~  406 (615)
                      |.||+|..  +|+.||||++.         +.+.+|+++|++++|+||+++++++...     ....++|+||+ +++|.
T Consensus        43 g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~  121 (367)
T 2fst_X           43 GSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLN  121 (367)
T ss_dssp             CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECC-CEECC
T ss_pred             eEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCeEEEEeccc-CCCHH
Confidence            58999986  78999999984         2466899999999999999999998643     13579999999 68999


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----  482 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----  482 (615)
                      +++...           .+++..+..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...    
T Consensus       122 ~~~~~~-----------~l~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~  187 (367)
T 2fst_X          122 NIVKCQ-----------KLTDDHVQFLIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLARHTADEMT  187 (367)
T ss_dssp             -----C-----------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECC------------
T ss_pred             HHHhcC-----------CCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHhhEEECCCCCEEEeeccccccccccCC
Confidence            988652           2899999999999999999999998   9999999999999999999999999986431    


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHH---------HHHHH
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE---------KREER  536 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~  536 (615)
                                       ..++.++|||||||++|||++|+.||......+.   ...+...+....         .....
T Consensus       188 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~---l~~i~~~~g~p~~~~~~~~~~~~~~~  264 (367)
T 2fst_X          188 GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ---LKLILRLVGTPGAELLKKISSESARN  264 (367)
T ss_dssp             ---CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHH---HHHHHHHHCSCCHHHHTTCCCHHHHH
T ss_pred             CcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHHHhCCCCHHHHHHhhhHHHHH
Confidence                             2356789999999999999999999976542211   111111111000         00000


Q ss_pred             HhhhcCCcCCCCC---ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          537 LRNWMDPNLESFY---PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       537 ~~~~~dp~l~~~~---~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ....+...-...+   .......+.+|+.+|++.||.+|||+.|++++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h  312 (367)
T 2fst_X          265 YIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  312 (367)
T ss_dssp             HHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             HHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence            0010100000000   01123457899999999999999999999885

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.97  E-value=2.7e-31  Score=284.46  Aligned_cols=226  Identities=21%  Similarity=0.253  Sum_probs=160.3

Q ss_pred             ceEEEEEE-CCeEEEEEEccH---HHHHHHHHHHhcCCCCcccEEEEEEcCCC-----cEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI-DGKVLAVKKIKE---DVTEELRILQRINHANLVKLMGVSSDSQG-----NRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~~---~~~~Ei~~l~~l~H~niv~l~g~~~~~~~-----~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||++.. .+..+|+|++..   ...+|+++|++++|+||+++++++.....     ..++||||++++.+........
T Consensus        54 g~V~~a~~~~~~~~aikk~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~  133 (394)
T 4e7w_A           54 GVVFQAKLVESDEVAIKKVLQDKRFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPETVYRASRHYAK  133 (394)
T ss_dssp             EEEEEEEETTTEEEEEEEEECCTTSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEECCSEEHHHHHHHHHH
T ss_pred             eEEEEEEECCCCeEEEEEEecCcchHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEeeccCccHHHHHHHHHh
Confidence            58999998 566799998853   24579999999999999999999864321     2789999998754433322111


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeC-CCCcEEEeecCCCCCCC----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD-SRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld-~~~~~kl~DFGla~~~~----------  482 (615)
                      ..       ..+++..+..++.|++.||+|||+++   |+||||||+|||++ .++.+||+|||+++...          
T Consensus       134 ~~-------~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~~~~~~~~  203 (394)
T 4e7w_A          134 LK-------QTMPMLLIKLYMYQLLRSLAYIHSIG---ICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSYIC  203 (394)
T ss_dssp             TT-------SCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSSCS
T ss_pred             hc-------CCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCCCCCccccc
Confidence            00       13899999999999999999999998   99999999999999 78999999999986421          


Q ss_pred             -------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH--HHHHHHHhhhcCCcCC-
Q 047629          483 -------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE--EKREERLRNWMDPNLE-  546 (615)
Q Consensus       483 -------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~dp~l~-  546 (615)
                                   ..++.++|||||||++|||++|+.||......+.  +.. +...+...  ......-....+..+. 
T Consensus       204 t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~--l~~-i~~~~g~p~~~~~~~~~~~~~~~~~~~  280 (394)
T 4e7w_A          204 SRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQ--LVE-IIKVLGTPSREQIKTMNPNYMEHKFPQ  280 (394)
T ss_dssp             CGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHH-HHHHHCCCCHHHHHHHCGGGSSSCCCC
T ss_pred             CcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH--HHH-HHHHhCCCCHHHHHhhChhhhhhcccc
Confidence                         1256789999999999999999999976542221  111 11111100  0000001111111111 


Q ss_pred             -------CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          547 -------SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       547 -------~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                             ..++......+.+|+.+||+.||.+|||+.|++++
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  322 (394)
T 4e7w_A          281 IRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCH  322 (394)
T ss_dssp             CCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             ccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcC
Confidence                   01122234568999999999999999999999975

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.97  E-value=3.5e-30  Score=273.47  Aligned_cols=220  Identities=21%  Similarity=0.310  Sum_probs=162.3

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCC-----cEEEEEeecCCCCHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQG-----NRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~-----~~~lV~E~~~~GsL~  406 (615)
                      |.||+|..  +|+.||||+++         ..+.+|+.++++++|+||+++++++...+.     ..++||||++ |+|.
T Consensus        56 g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~  134 (371)
T 4exu_A           56 GSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-TDLQ  134 (371)
T ss_dssp             EEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCCCEEEEECCC-EEHH
T ss_pred             eEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccceeEEEEEcccc-ccHH
Confidence            58999987  68999999985         346789999999999999999999865432     1399999997 6898


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----  482 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----  482 (615)
                      +++..            .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...    
T Consensus       135 ~~~~~------------~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~  199 (371)
T 4exu_A          135 KIMGM------------EFSEEKIQYLVYQMLKGLKYIHSAG---VVHRDLKPGNLAVNEDCELKILDFGLARHADAEMT  199 (371)
T ss_dssp             HHTTS------------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECSTTCC--------
T ss_pred             HHhhc------------CCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCcCHHHeEECCCCCEEEEecCcccccccCcC
Confidence            88742            2889999999999999999999998   9999999999999999999999999986431    


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH---------HHHHHH
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE---------EKREER  536 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~  536 (615)
                                       ..++.++|||||||++|||++|+.||......+.   ...+.......         ......
T Consensus       200 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~  276 (371)
T 4exu_A          200 GYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQ---LTQILKVTGVPGTEFVQKLNDKAAKS  276 (371)
T ss_dssp             CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHH---HHHHHHHHCCCCHHHHTTCSCHHHHH
T ss_pred             CcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHH---HHHHHHHhCCCcHHHHHHhhhhhhhh
Confidence                             2356789999999999999999999976442211   11111111000         000000


Q ss_pred             HhhhcCCcCCCC---CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          537 LRNWMDPNLESF---YPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       537 ~~~~~dp~l~~~---~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ....+.......   ........+.+|+.+|++.||++|||+.|+++.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  324 (371)
T 4exu_A          277 YIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH  324 (371)
T ss_dssp             HHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             hhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence            111111111110   111234568999999999999999999999886

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.97  E-value=1.5e-30  Score=270.92  Aligned_cols=210  Identities=21%  Similarity=0.337  Sum_probs=158.7

Q ss_pred             ceEEEEEE--CCeEEEEEEccH--------HHHHHHH-HHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE--------DVTEELR-ILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~--------~~~~Ei~-~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.||++..  +|+.||||+++.        .+..|+. +++.++||||+++++++.+. +..++||||+++ +|.+++..
T Consensus        36 g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~-~~~~lv~e~~~~-~l~~~~~~  113 (327)
T 3aln_A           36 GSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFRE-GDCWICMELMST-SFDKFYKY  113 (327)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECS-SEEEEEECCCSE-EHHHHHHH
T ss_pred             EEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeC-CceEEEEeecCC-ChHHHHHH
Confidence            58999998  589999998852        3445555 66778999999999998764 478999999984 88887753


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhC-CCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH-AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      .....     ...+++..+..++.|++.||.|||+. +   |+||||||+|||++.++.+||+|||+++...        
T Consensus       114 ~~~~~-----~~~~~~~~~~~i~~~i~~~l~~lH~~~~---ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~  185 (327)
T 3aln_A          114 VYSVL-----DDVIPEEILGKITLATVKALNHLKENLK---IIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRD  185 (327)
T ss_dssp             HHHTT-----CCCCCHHHHHHHHHHHHHHHHHHHHHHS---CCCSCCCGGGEEEETTTEEEECCCSSSCC----------
T ss_pred             HHhhh-----cccCcHHHHHHHHHHHHHHHHHHhccCC---EeECCCCHHHEEEcCCCCEEEccCCCceecccccccccC
Confidence            11000     01389999999999999999999998 7   9999999999999999999999999986431        


Q ss_pred             ------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc---
Q 047629          483 ------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM---  541 (615)
Q Consensus       483 ------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---  541 (615)
                                        ..++.++||||||+++|||++|+.||.......                   ..+...+   
T Consensus       186 ~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-------------------~~~~~~~~~~  246 (327)
T 3aln_A          186 AGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVF-------------------DQLTQVVKGD  246 (327)
T ss_dssp             --------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC--------------------------CCCCCSC
T ss_pred             CCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHH-------------------HHHHHHhcCC
Confidence                              124568999999999999999999997532100                   0111111   


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+.+...........+.+++..||+.||.+||++.|+++.
T Consensus       247 ~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h  286 (327)
T 3aln_A          247 PPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKH  286 (327)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             CCCCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHhC
Confidence            1222222222344568999999999999999999999875

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.97  E-value=4.6e-30  Score=270.37  Aligned_cols=220  Identities=21%  Similarity=0.310  Sum_probs=163.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCC-----cEEEEEeecCCCCHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQG-----NRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~-----~~~lV~E~~~~GsL~  406 (615)
                      |.||+|..  +|+.||||++.         ..+.+|+.++++++||||+++++++...+.     ..++||||++ |+|.
T Consensus        38 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~  116 (353)
T 3coi_A           38 GSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-TDLQ  116 (353)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECCS-EEGG
T ss_pred             eEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccceeEEEEecccc-CCHH
Confidence            58999987  68999999984         346789999999999999999999865432     2499999997 6898


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----  482 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----  482 (615)
                      +++..            .+++.++..++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++...    
T Consensus       117 ~~~~~------------~~~~~~~~~i~~qi~~al~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~  181 (353)
T 3coi_A          117 KIMGL------------KFSEEKIQYLVYQMLKGLKYIHSAG---VVHRDLKPGNLAVNEDCELKILDFGLARHADAEMT  181 (353)
T ss_dssp             GTTTS------------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECTTCCEEECSTTCTTC------
T ss_pred             HHhcC------------CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEeECCCCcEEEeecccccCCCCCcc
Confidence            88742            2889999999999999999999998   9999999999999999999999999986431    


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH-H--------HHHHH
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE-E--------KREER  536 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~-~--------~~~~~  536 (615)
                                       ..++.++||||||+++|||++|+.||......+   ....+....... .        .....
T Consensus       182 ~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~  258 (353)
T 3coi_A          182 GYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD---QLTQILKVTGVPGTEFVQKLNDKAAKS  258 (353)
T ss_dssp             --CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHH---HHHHHHHHHCBCCHHHHTTCSCHHHHH
T ss_pred             ccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHHhCCCCHHHHHHHhhHHHHH
Confidence                             234678999999999999999999997644211   111111111000 0        00000


Q ss_pred             HhhhcCCcCC---CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          537 LRNWMDPNLE---SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       537 ~~~~~dp~l~---~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ....+.....   ..........+.+++.+|++.||++|||+.|++++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h  306 (353)
T 3coi_A          259 YIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH  306 (353)
T ss_dssp             HHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             HHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence            0011111001   11222345678999999999999999999999875

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.97  E-value=3.2e-30  Score=270.05  Aligned_cols=215  Identities=18%  Similarity=0.263  Sum_probs=155.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccH--HHHHHHH-HHHhcCCCCcccEEEEEEcC---CCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE--DVTEELR-ILQRINHANLVKLMGVSSDS---QGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~--~~~~Ei~-~l~~l~H~niv~l~g~~~~~---~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      |.||++..  +|+.||||++..  ...+|+. .+..++|+||+++++++...   +...++||||+++|+|.+++.....
T Consensus        43 g~V~~~~~~~~~~~vavK~~~~~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~  122 (336)
T 3fhr_A           43 GKVLECFHRRTGQKCALKLLYDSPKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGD  122 (336)
T ss_dssp             EEEEEEEETTTCCEEEEEEEESSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCTTEEHHHHHHTC-C
T ss_pred             eEEEEEEECCCCCEEEEEEecCcHHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEEEEEeccCCCCHHHHHHhcCC
Confidence            58999998  589999999863  3334444 35667999999999997642   2247999999999999999986543


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC---CCcEEEeecCCCCCCCC--------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS---RFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~---~~~~kl~DFGla~~~~~--------  483 (615)
                      .        .+++.++..++.|++.||.|||+++   |+||||||+|||++.   ++.+||+|||+++....        
T Consensus       123 ~--------~l~~~~~~~i~~ql~~~l~~LH~~~---ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~  191 (336)
T 3fhr_A          123 Q--------AFTEREAAEIMRDIGTAIQFLHSHN---IAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPCY  191 (336)
T ss_dssp             C--------CCBHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSTTCCEEECCCTTCEEC----------
T ss_pred             C--------CCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEEecCCCceEEEeccccceeccccccccCCC
Confidence            1        3899999999999999999999998   999999999999986   45599999999864321        


Q ss_pred             -------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          484 -------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       484 -------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                   .++.++||||||+++|||++|+.||..........   ......        ....   ........
T Consensus       192 t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~---~~~~~~--------~~~~---~~~~~~~~  257 (336)
T 3fhr_A          192 TPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISP---GMKRRI--------RLGQ---YGFPNPEW  257 (336)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHHHHSSCCC-----------------------------------CCCTTTS
T ss_pred             CcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhh---hHHHhh--------hccc---cccCchhh
Confidence                         12357899999999999999999997543221100   000000        0000   01111111


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNL  582 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L  582 (615)
                      ......+.+|+.+||+.||.+|||+.|+++.-
T Consensus       258 ~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp  289 (336)
T 3fhr_A          258 SEVSEDAKQLIRLLLKTDPTERLTITQFMNHP  289 (336)
T ss_dssp             TTCCHHHHHHHHHHSCSSGGGSCCHHHHHHSH
T ss_pred             ccCCHHHHHHHHHHCCCChhHCcCHHHHhcCc
Confidence            23345688999999999999999999999853

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.97  E-value=2.1e-30  Score=278.39  Aligned_cols=165  Identities=24%  Similarity=0.420  Sum_probs=132.0

Q ss_pred             ceEEEEEE----CCeEEEEEEcc-----HHHHHHHHHHHhcCCCCcccEEEEEEc-CCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI----DGKVLAVKKIK-----EDVTEELRILQRINHANLVKLMGVSSD-SQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~----~g~~vAvK~~~-----~~~~~Ei~~l~~l~H~niv~l~g~~~~-~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||+|..    +++.||||+++     ..+.+|+++|++++||||+++++++.. .+...++||||++ |+|.+++...
T Consensus        35 g~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~  113 (405)
T 3rgf_A           35 GHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE-HDLWHIIKFH  113 (405)
T ss_dssp             -EEEEEEESSSSCCCCEEEEECSSSSCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECCS-EEHHHHHHHH
T ss_pred             eEEEEEEEccCCCCeEEEEEEECCCCCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCCC-CCHHHHHHHh
Confidence            58999996    37889999986     468899999999999999999999864 3446899999997 5888887532


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceee----CCCCcEEEeecCCCCCCC------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL----DSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl----d~~~~~kl~DFGla~~~~------  482 (615)
                      ..... ......+++..+..++.|++.||.|||+++   |+||||||+|||+    +.++.+||+|||+++...      
T Consensus       114 ~~~~~-~~~~~~l~~~~~~~i~~qi~~al~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~  189 (405)
T 3rgf_A          114 RASKA-NKKPVQLPRGMVKSLLYQILDGIHYLHANW---VLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPL  189 (405)
T ss_dssp             HHHC--------CCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECCSSTTTTCEEECCTTCCC---------
T ss_pred             ccccc-cccccCCCHHHHHHHHHHHHHHHHHHHhCC---EeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCccc
Confidence            21000 000123899999999999999999999998   9999999999999    778999999999996431      


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCC
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTE  512 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~  512 (615)
                                           ..++.++|||||||++|||++|+.||....
T Consensus       190 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~  240 (405)
T 3rgf_A          190 ADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQ  240 (405)
T ss_dssp             -------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC
T ss_pred             ccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCcc
Confidence                                 124568999999999999999999997543

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.97  E-value=5.5e-30  Score=277.84  Aligned_cols=213  Identities=18%  Similarity=0.337  Sum_probs=156.7

Q ss_pred             ceE-EEEEECCeEEEEEEccH----HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCC
Q 047629          343 KSV-YRATIDGKVLAVKKIKE----DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSS  416 (615)
Q Consensus       343 ~~V-y~~~~~g~~vAvK~~~~----~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~  416 (615)
                      |.| +++..+|+.||||++..    .+.+|+++|.++ +||||+++++++.+. +..++||||++ |+|.+++.......
T Consensus        29 g~V~~~~~~~g~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~-~~~~lv~E~~~-gsL~~~l~~~~~~~  106 (434)
T 2rio_A           29 GTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPNVIRYYCSETTD-RFLYIALELCN-LNLQDLVESKNVSD  106 (434)
T ss_dssp             TCEEEEEESSSSEEEEEEEEGGGHHHHHHHHHHHHHHTTSTTBCCEEEEEECS-SEEEEEECCCS-EEHHHHHHTC----
T ss_pred             eEEEEEEEECCeEEEEEEEcHHHHHHHHHHHHHHHhccCCCCcCeEEEEEecC-CeEEEEEecCC-CCHHHHHhccCCCc
Confidence            356 55556899999999863    467899999987 899999999998754 47899999995 79999998654321


Q ss_pred             CCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC-------------CCcEEEeecCCCCCCC-
Q 047629          417 SSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS-------------RFKAKIANFSLAAPAT-  482 (615)
Q Consensus       417 ~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-------------~~~~kl~DFGla~~~~-  482 (615)
                      ..   ....++..++.++.||+.||+|||+++   |+||||||+|||++.             ++.+||+|||+++... 
T Consensus       107 ~~---~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~  180 (434)
T 2rio_A          107 EN---LKLQKEYNPISLLRQIASGVAHLHSLK---IIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDS  180 (434)
T ss_dssp             -----------CCHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC
T ss_pred             hh---hhhccchhHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCC
Confidence            00   001234456789999999999999998   999999999999965             4589999999985321 


Q ss_pred             ---------------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHh
Q 047629          483 ---------------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLK  528 (615)
Q Consensus       483 ---------------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~  528 (615)
                                                       ..++.++|||||||++|||++ |+.|+......+.            
T Consensus       181 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~------------  248 (434)
T 2rio_A          181 GQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRES------------  248 (434)
T ss_dssp             --------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHHH------------
T ss_pred             CCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhHH------------
Confidence                                             124567999999999999999 8999865432110            


Q ss_pred             HHHHHHHHHhhhcC-CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          529 VEEKREERLRNWMD-PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       529 ~~~~~~~~~~~~~d-p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                            ..+....+ +.+....+......+.+++.+||+.||.+|||+.||+++
T Consensus       249 ------~i~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h  296 (434)
T 2rio_A          249 ------NIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRH  296 (434)
T ss_dssp             ------HHHHTCCCCCCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             ------HHhcCCCCcccccccccccchHHHHHHHHHHhhCChhhCCCHHHHHhC
Confidence                  01111111 112222234566789999999999999999999999863

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.97  E-value=5.1e-30  Score=277.83  Aligned_cols=205  Identities=20%  Similarity=0.323  Sum_probs=155.0

Q ss_pred             eEEEEEECCeEEEEEEccH----HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCC
Q 047629          344 SVYRATIDGKVLAVKKIKE----DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSS  418 (615)
Q Consensus       344 ~Vy~~~~~g~~vAvK~~~~----~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~  418 (615)
                      .||++..+|+.||||++..    .+.+|+++|+++ +|||||++++++.+. ...++||||++ |+|.+++......   
T Consensus        40 V~~~~~~~~~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~-~~~~lv~E~~~-g~L~~~l~~~~~~---  114 (432)
T 3p23_A           40 IVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNVIRYFCTEKDR-QFQYIAIELCA-ATLQEYVEQKDFA---  114 (432)
T ss_dssp             EEEEEESSSSEEEEEEECTTTEEECHHHHHHHHHSCCCTTBCCEEEEEEET-TEEEEEEECCS-EEHHHHHHSSSCC---
T ss_pred             EEEEEEeCCeEEEEEEECHHHHHHHHHHHHHHHhccCCCCcCeEEEEEecC-CEEEEEEECCC-CCHHHHHHhcCCC---
Confidence            3777778999999999864    367899999999 899999999998754 47899999996 6999999865431   


Q ss_pred             CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeC-----CCCcEEEeecCCCCCCC-----------
Q 047629          419 SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD-----SRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       419 ~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld-----~~~~~kl~DFGla~~~~-----------  482 (615)
                            +.+..+..++.|++.||.|||+++   |+||||||+|||++     .+.++||+|||+++...           
T Consensus       115 ------~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~  185 (432)
T 3p23_A          115 ------HLGLEPITLLQQTTSGLAHLHSLN---IVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSG  185 (432)
T ss_dssp             ------CCSSCHHHHHHHHHHHHHHHHHTT---CCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------------
T ss_pred             ------ccchhHHHHHHHHHHHHHHHHHCc---CEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccc
Confidence                  444456789999999999999998   99999999999994     34578999999985431           


Q ss_pred             ------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCC
Q 047629          483 ------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDP  543 (615)
Q Consensus       483 ------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp  543 (615)
                                        ...+.++|||||||++|||++ |+.|+........                  ..+......
T Consensus       186 ~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~------------------~~~~~~~~~  247 (432)
T 3p23_A          186 VPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQA------------------NILLGACSL  247 (432)
T ss_dssp             CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHH------------------HHHTTCCCC
T ss_pred             cCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHH------------------HHHhccCCc
Confidence                              113447999999999999999 8888854332100                  001111111


Q ss_pred             cCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          544 NLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       544 ~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .. ...+......+.+|+.+||+.||.+|||+.||+++
T Consensus       248 ~~-~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~h  284 (432)
T 3p23_A          248 DC-LHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLKH  284 (432)
T ss_dssp             TT-SCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             cc-cCccccccHHHHHHHHHHHhCCHhhCCCHHHHHhC
Confidence            00 01122344557899999999999999999999953

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.97  E-value=8.3e-30  Score=267.34  Aligned_cols=223  Identities=19%  Similarity=0.255  Sum_probs=162.7

Q ss_pred             ceEEEEEE--CC-eEEEEEEcc------HHHHHHHHHHHhcCCCC------cccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DG-KVLAVKKIK------EDVTEELRILQRINHAN------LVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g-~~vAvK~~~------~~~~~Ei~~l~~l~H~n------iv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||++..  ++ +.||||.++      ..+.+|++++++++|+|      ++.+.+++... +..++||||+ +|+|.+
T Consensus        33 g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~lv~e~~-~~~l~~  110 (355)
T 2eu9_A           33 GKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFH-GHMCIAFELL-GKNTFE  110 (355)
T ss_dssp             EEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEET-TEEEEEEECC-CCBHHH
T ss_pred             eEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeC-CeEEEEEecc-CCChHH
Confidence            58999987  34 799999986      34678999999997766      89999988754 4899999999 667878


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceee-------------------CCCC
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQL-------------------DSRF  468 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILl-------------------d~~~  468 (615)
                      ++......        .+++.++..++.|++.||.|||+++   |+||||||+|||+                   +.++
T Consensus       111 ~l~~~~~~--------~~~~~~~~~i~~qi~~~L~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~  179 (355)
T 2eu9_A          111 FLKENNFQ--------PYPLPHVRHMAYQLCHALRFLHENQ---LTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNT  179 (355)
T ss_dssp             HHHHTTTC--------CCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCC
T ss_pred             HHHhccCC--------CCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEecccccccccccccccccccCCC
Confidence            77654421        3899999999999999999999998   9999999999999                   5678


Q ss_pred             cEEEeecCCCCCCC--------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHh
Q 047629          469 KAKIANFSLAAPAT--------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLK  528 (615)
Q Consensus       469 ~~kl~DFGla~~~~--------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~  528 (615)
                      .+||+|||+++...                    ..++.++|||||||++|||++|+.||......+....   +.....
T Consensus       180 ~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~---~~~~~~  256 (355)
T 2eu9_A          180 SIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVM---MEKILG  256 (355)
T ss_dssp             CEEECCCTTCEETTSCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHH---HHHHHC
T ss_pred             cEEEeecCccccccccccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHH---HHHHcC
Confidence            99999999986431                    2356789999999999999999999976543222111   111110


Q ss_pred             H---HHHH---------------------HHHHhhhcCCcC-CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          529 V---EEKR---------------------EERLRNWMDPNL-ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       529 ~---~~~~---------------------~~~~~~~~dp~l-~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .   ....                     ...+.+...+.. ...........+.+|+.+||+.||++|||+.|++++
T Consensus       257 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h  334 (355)
T 2eu9_A          257 PIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLH  334 (355)
T ss_dssp             CCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             CCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence            0   0000                     000000000000 001122345678999999999999999999999864

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.96  E-value=6.8e-30  Score=265.59  Aligned_cols=197  Identities=21%  Similarity=0.322  Sum_probs=160.3

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH-------------HHHHHHHHHhcC--CCCcccEEEEEEcCCCcEEEEEeecCC-CC
Q 047629          343 KSVYRATI--DGKVLAVKKIKED-------------VTEELRILQRIN--HANLVKLMGVSSDSQGNRFLVYEYAEN-GS  404 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~-------------~~~Ei~~l~~l~--H~niv~l~g~~~~~~~~~~lV~E~~~~-Gs  404 (615)
                      |.||+|..  +|+.||||.++..             +.+|+.++++++  |+||+++++++.+. +..++|+|++.+ ++
T Consensus        57 g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~-~~~~lv~e~~~~~~~  135 (320)
T 3a99_A           57 GSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP-DSFVLILERPEPVQD  135 (320)
T ss_dssp             CEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS-SEEEEEEECCSSEEE
T ss_pred             eEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC-CcEEEEEEcCCCCcc
Confidence            58999987  7899999998632             457999999996  59999999998754 478999999976 89


Q ss_pred             HHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeC-CCCcEEEeecCCCCCCCC
Q 047629          405 LDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD-SRFKAKIANFSLAAPATN  483 (615)
Q Consensus       405 L~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld-~~~~~kl~DFGla~~~~~  483 (615)
                      |.+++....          .+++..+..++.|++.||+|||+++   |+||||||+|||++ +++.+||+|||+++....
T Consensus       136 L~~~l~~~~----------~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~  202 (320)
T 3a99_A          136 LFDFITERG----------ALQEELARSFFWQVLEAVRHCHNCG---VLHRDIKDENILIDLNRGELKLIDFGSGALLKD  202 (320)
T ss_dssp             HHHHHHHHC----------SCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTTEEEECCCTTCEECCS
T ss_pred             HHHHHhccC----------CCCHHHHHHHHHHHHHHHHHHHHCC---cEeCCCCHHHEEEeCCCCCEEEeeCcccccccc
Confidence            999997643          3899999999999999999999998   99999999999999 779999999999865422


Q ss_pred             C----------------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          484 D----------------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       484 ~----------------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                      .                      .+.++||||||+++|||++|+.||.....                      ..... 
T Consensus       203 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~----------------------~~~~~-  259 (320)
T 3a99_A          203 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE----------------------IIRGQ-  259 (320)
T ss_dssp             SCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH----------------------HHHCC-
T ss_pred             ccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhh----------------------hhccc-
Confidence            1                      13578999999999999999999853210                      00000 


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       ...    +......+.+++.+||+.||++|||+.|+++.
T Consensus       260 -~~~----~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  294 (320)
T 3a99_A          260 -VFF----RQRVSSECQHLIRWCLALRPSDRPTFEEIQNH  294 (320)
T ss_dssp             -CCC----SSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             -ccc----cccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence             111    12233457899999999999999999999875

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.96  E-value=4.2e-30  Score=272.04  Aligned_cols=227  Identities=19%  Similarity=0.262  Sum_probs=163.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhcC-----------CCCcccEEEEEEcCC---CcEEEEEeec
Q 047629          343 KSVYRATI--DGKVLAVKKIK------EDVTEELRILQRIN-----------HANLVKLMGVSSDSQ---GNRFLVYEYA  400 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l~-----------H~niv~l~g~~~~~~---~~~~lV~E~~  400 (615)
                      |.||++..  +|+.||||.++      ..+.+|++++.+++           |+||+++++++...+   ...++||||+
T Consensus        33 g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~lv~e~~  112 (373)
T 1q8y_A           33 STVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVL  112 (373)
T ss_dssp             EEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEECCC
T ss_pred             eEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhccCCCCceEEEEEecC
Confidence            58999996  78999999986      34678999999886           899999999986432   1478999999


Q ss_pred             CCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhC-CCCCeEecCCCCCceeeC------CCCcEEEe
Q 047629          401 ENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH-AQPSIVHRDIRTNNIQLD------SRFKAKIA  473 (615)
Q Consensus       401 ~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-~~~~ivHrDlk~~NILld------~~~~~kl~  473 (615)
                       +|+|.+++......        .+++..+..++.|++.||+|||++ +   |+||||||+|||++      ..+.+||+
T Consensus       113 -~~~L~~~~~~~~~~--------~~~~~~~~~i~~qi~~aL~~lH~~~~---ivH~Dikp~NIll~~~~~~~~~~~~kl~  180 (373)
T 1q8y_A          113 -GENLLALIKKYEHR--------GIPLIYVKQISKQLLLGLDYMHRRCG---IIHTDIKPENVLMEIVDSPENLIQIKIA  180 (373)
T ss_dssp             -CEEHHHHHHHTTTS--------CCCHHHHHHHHHHHHHHHHHHHHTTC---EECSCCSGGGEEEEEEETTTTEEEEEEC
T ss_pred             -CCCHHHHHHHhhcc--------CCcHHHHHHHHHHHHHHHHHHHhcCC---EEecCCChHHeEEeccCCCcCcceEEEc
Confidence             88999999764431        389999999999999999999998 7   99999999999994      45589999


Q ss_pred             ecCCCCCCC--------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChh---HHHHHHHHHHHhH-
Q 047629          474 NFSLAAPAT--------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKT---AVLWKEIREVLKV-  529 (615)
Q Consensus       474 DFGla~~~~--------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~---~~l~~~~~~~~~~-  529 (615)
                      |||+++...                    ..++.++|||||||++|||++|+.||........   ......+...+.. 
T Consensus       181 Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  260 (373)
T 1q8y_A          181 DLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGEL  260 (373)
T ss_dssp             CCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSC
T ss_pred             ccccccccCCCCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCC
Confidence            999986432                    1256789999999999999999999975442111   0111111111100 


Q ss_pred             --HHHHH-HHHhhhcCCc-------------------CCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          530 --EEKRE-ERLRNWMDPN-------------------LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       530 --~~~~~-~~~~~~~dp~-------------------l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                        ..... .....+.+..                   -...++......+.+|+..||+.||++|||+.|++++
T Consensus       261 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  334 (373)
T 1q8y_A          261 PSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNH  334 (373)
T ss_dssp             CHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTC
T ss_pred             CHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhhC
Confidence              00000 0000001000                   0113456777889999999999999999999999885

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.96  E-value=1.4e-29  Score=261.91  Aligned_cols=207  Identities=18%  Similarity=0.332  Sum_probs=153.9

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      +.||++..  +|+.||||+++.         .+.++..+++.++|+||+++++++.+. +..++||||+ ++.+..+...
T Consensus        39 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~-~~~~lv~e~~-~~~~~~l~~~  116 (318)
T 2dyl_A           39 GQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITN-TDVFIAMELM-GTCAEKLKKR  116 (318)
T ss_dssp             -CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-SEEEEEECCC-SEEHHHHHHH
T ss_pred             eeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecC-CcEEEEEecc-CCcHHHHHHH
Confidence            58999998  689999999852         133445567788999999999998764 4799999999 4455555543


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhC-CCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH-AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ...         .+++..+..++.|++.||.|||+. +   ++||||||+||+++.++.+||+|||+++...        
T Consensus       117 ~~~---------~~~~~~~~~~~~~i~~~l~~lH~~~~---i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~  184 (318)
T 2dyl_A          117 MQG---------PIPERILGKMTVAIVKALYYLKEKHG---VIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRS  184 (318)
T ss_dssp             HTS---------CCCHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCGGGEEECTTSCEEECCCTTC------------
T ss_pred             hcc---------CCCHHHHHHHHHHHHHHHHHHHhhCC---EEeCCCCHHHEEECCCCCEEEEECCCchhccCCcccccc
Confidence            222         389999999999999999999985 7   9999999999999999999999999985421        


Q ss_pred             -------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCC
Q 047629          483 -------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDP  543 (615)
Q Consensus       483 -------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp  543 (615)
                                         ..++.++||||||+++|||++|+.||........  .   +..           +.....+
T Consensus       185 ~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--~---~~~-----------~~~~~~~  248 (318)
T 2dyl_A          185 AGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFE--V---LTK-----------VLQEEPP  248 (318)
T ss_dssp             --CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHH--H---HHH-----------HHHSCCC
T ss_pred             CCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHH--H---HHH-----------HhccCCC
Confidence                               1245689999999999999999999975432111  1   111           1111111


Q ss_pred             cCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          544 NLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       544 ~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+..  .......+.+++.+||+.||.+||++.|+++.
T Consensus       249 ~~~~--~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  284 (318)
T 2dyl_A          249 LLPG--HMGFSGDFQSFVKDCLTKDHRKRPKYNKLLEH  284 (318)
T ss_dssp             CCCS--SSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             CCCc--cCCCCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence            1111  11233457899999999999999999999884

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.96  E-value=1.1e-29  Score=270.82  Aligned_cols=168  Identities=23%  Similarity=0.286  Sum_probs=135.9

Q ss_pred             ccccccccc----ceEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhcC-CC-----CcccEEEEEEcCCCcEEE
Q 047629          334 NLSEHYSIG----KSVYRATI--DGKVLAVKKIK------EDVTEELRILQRIN-HA-----NLVKLMGVSSDSQGNRFL  395 (615)
Q Consensus       334 ~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l~-H~-----niv~l~g~~~~~~~~~~l  395 (615)
                      +|.....+|    |.||+|..  +|+.||||+++      ..+..|+.++..++ |+     +|+++.+++... +..++
T Consensus        55 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~-~~~~l  133 (382)
T 2vx3_A           55 RYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFR-NHLCL  133 (382)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEET-TEEEE
T ss_pred             eEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccC-CceEE
Confidence            344444454    58999987  68999999986      34567889998884 55     499999998764 47999


Q ss_pred             EEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeC--CCCcEEEe
Q 047629          396 VYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD--SRFKAKIA  473 (615)
Q Consensus       396 V~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld--~~~~~kl~  473 (615)
                      ||||++ |+|.+++......        .+++..+..++.|++.||.|||++ ..+|+||||||+|||++  .++.+||+
T Consensus       134 v~e~~~-~~L~~~l~~~~~~--------~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~  203 (382)
T 2vx3_A          134 VFEMLS-YNLYDLLRNTNFR--------GVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIV  203 (382)
T ss_dssp             EEECCC-CBHHHHHHHTTTS--------CCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEEC
T ss_pred             EEecCC-CCHHHHHhhcCcC--------CCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEE
Confidence            999996 5999999865431        389999999999999999999953 12499999999999994  57889999


Q ss_pred             ecCCCCCCC--------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCC
Q 047629          474 NFSLAAPAT--------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTE  512 (615)
Q Consensus       474 DFGla~~~~--------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~  512 (615)
                      |||+++...                    ..++.++|||||||++|||++|+.||....
T Consensus       204 DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~  262 (382)
T 2vx3_A          204 DFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGAN  262 (382)
T ss_dssp             CCTTCEETTCCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             eccCceecccccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            999986432                    125679999999999999999999998654

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.96  E-value=4.5e-30  Score=265.36  Aligned_cols=197  Identities=23%  Similarity=0.369  Sum_probs=157.8

Q ss_pred             ceEEEEEE--CCeEEEEEEccH-------------HHHHHHHHHHhc----CCCCcccEEEEEEcCCCcEEEEEee-cCC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE-------------DVTEELRILQRI----NHANLVKLMGVSSDSQGNRFLVYEY-AEN  402 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~-------------~~~~Ei~~l~~l----~H~niv~l~g~~~~~~~~~~lV~E~-~~~  402 (615)
                      |.||+|..  +|+.||||.++.             .+.+|+.++.++    +|+||+++++++... +..++|+|| +++
T Consensus        45 g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~~-~~~~~v~e~~~~~  123 (312)
T 2iwi_A           45 GTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQ-EGFMLVLERPLPA  123 (312)
T ss_dssp             EEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC------CEEEEECCSSE
T ss_pred             EEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEecC-CeEEEEEEecCCC
Confidence            48999987  789999999852             134699999999    899999999998654 468999999 789


Q ss_pred             CCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeC-CCCcEEEeecCCCCCC
Q 047629          403 GSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD-SRFKAKIANFSLAAPA  481 (615)
Q Consensus       403 GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld-~~~~~kl~DFGla~~~  481 (615)
                      |+|.+++....          .+++..++.++.|++.||+|||+++   |+||||||+||+++ .++.+||+|||+++..
T Consensus       124 ~~L~~~l~~~~----------~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~~  190 (312)
T 2iwi_A          124 QDLFDYITEKG----------PLGEGPSRCFFGQVVAAIQHCHSRG---VVHRDIKDENILIDLRRGCAKLIDFGSGALL  190 (312)
T ss_dssp             EEHHHHHHHHC----------SCCHHHHHHHHHHHHHHHHHHHHHT---EECCCCSGGGEEEETTTTEEEECCCSSCEEC
T ss_pred             CCHHHHHHhcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCChhhEEEeCCCCeEEEEEcchhhhc
Confidence            99999997643          2899999999999999999999998   99999999999999 7899999999998654


Q ss_pred             CCC---------------------C-CCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhh
Q 047629          482 TND---------------------V-MPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRN  539 (615)
Q Consensus       482 ~~~---------------------~-~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  539 (615)
                      ...                     . +.++||||||+++|||++|+.||....            ..          ...
T Consensus       191 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~------------~~----------~~~  248 (312)
T 2iwi_A          191 HDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ------------EI----------LEA  248 (312)
T ss_dssp             CSSCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH------------HH----------HHT
T ss_pred             ccCcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH------------HH----------hhh
Confidence            211                     1 237999999999999999999986311            00          000


Q ss_pred             hcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          540 WMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       540 ~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                        ..    .++......+.+++.+||+.||++|||+.|+++.
T Consensus       249 --~~----~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~  284 (312)
T 2iwi_A          249 --EL----HFPAHVSPDCCALIRRCLAPKPSSRPSLEEILLD  284 (312)
T ss_dssp             --CC----CCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             --cc----CCcccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence              01    1223334567899999999999999999999975

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.96  E-value=9.6e-29  Score=283.01  Aligned_cols=200  Identities=18%  Similarity=0.225  Sum_probs=156.0

Q ss_pred             ceEEEEEE---CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCc----EEEEEeecCCCCHHH
Q 047629          343 KSVYRATI---DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGN----RFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~---~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~----~~lV~E~~~~GsL~~  407 (615)
                      |.||++..   +|+.||||++.        ..+.+|++++.+++||||+++++++...+..    .+|||||+++|+|.+
T Consensus        94 g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~~lv~E~~~g~~L~~  173 (681)
T 2pzi_A           94 GWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKR  173 (681)
T ss_dssp             EEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEEEEEEECCCCEECC-
T ss_pred             eEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCceeEEEEEeCCCCcHHH
Confidence            48999987   58999999884        2467899999999999999999998764422    699999999999998


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC---
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND---  484 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~---  484 (615)
                      ++..            .++|.+++.++.||+.||.|||+++   |+||||||+|||++.+ .+||+|||+++.....   
T Consensus       174 ~~~~------------~l~~~~~~~~~~qi~~aL~~lH~~g---iiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~~~~~  237 (681)
T 2pzi_A          174 SKGQ------------KLPVAEAIAYLLEILPALSYLHSIG---LVYNDLKPENIMLTEE-QLKLIDLGAVSRINSFGYL  237 (681)
T ss_dssp             ---C------------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECSS-CEEECCCTTCEETTCCSCC
T ss_pred             HHhC------------CCCHHHHHHHHHHHHHHHHHHHHCC---CeecccChHHeEEeCC-cEEEEecccchhcccCCcc
Confidence            7754            2899999999999999999999998   9999999999999986 8999999998654221   


Q ss_pred             ---------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          485 ---------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       485 ---------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                     .+.++|||||||++|||++|..|+.........                            ....
T Consensus       238 ~gt~~y~aPE~~~~~~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~~----------------------------~~~~  289 (681)
T 2pzi_A          238 YGTPGFQAPEIVRTGPTVATDIYTVGRTLAALTLDLPTRNGRYVDGLP----------------------------EDDP  289 (681)
T ss_dssp             CCCTTTSCTTHHHHCSCHHHHHHHHHHHHHHHHSCCCEETTEECSSCC----------------------------TTCH
T ss_pred             CCCccccCHHHHcCCCCCceehhhhHHHHHHHHhCCCCCccccccccc----------------------------cccc
Confidence                           245899999999999999999887542211000                            0000


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHhcc
Q 047629          550 PIDGALSLATLARACTMDKSLSRPN-MAEVVFNLSVLT  586 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPs-m~ev~~~L~~l~  586 (615)
                      .......+.+++.+||+.||.+||+ ++++...|..+.
T Consensus       290 ~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~  327 (681)
T 2pzi_A          290 VLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVL  327 (681)
T ss_dssp             HHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHH
Confidence            0112235789999999999999995 666766676554

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.95  E-value=1.7e-28  Score=275.97  Aligned_cols=220  Identities=22%  Similarity=0.296  Sum_probs=160.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEc-----CCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSD-----SQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~-----~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||++..  +|+.||||+++        ..+.+|++++++++||||+++++++..     .++..++||||+++|+|.+
T Consensus        28 G~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~~LVmEy~~ggsL~~  107 (676)
T 3qa8_A           28 GYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRK  107 (676)
T ss_dssp             SBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSCCCEEECCSSCBHHH
T ss_pred             eEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeEEEEEEeCCCCCHHH
Confidence            48999987  68999999875        347789999999999999999998643     1345799999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCc---EEEeecCCCCCCC--
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFK---AKIANFSLAAPAT--  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~---~kl~DFGla~~~~--  482 (615)
                      ++......       ..+++..+..++.|++.||+|||+++   |+||||||+||+++.++.   +||+|||+++...  
T Consensus       108 ~L~~~~~~-------~~lse~~i~~I~~QLl~aL~yLHs~g---IVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~~  177 (676)
T 3qa8_A          108 YLNQFENC-------CGLKEGPIRTLLSDISSALRYLHENR---IIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQG  177 (676)
T ss_dssp             HHHSSSCT-------TCCCSSHHHHHHHHHHHHHHHHHHTT---BCCCCCCSTTEEEECCSSSCEEEECSCCCCCBTTSC
T ss_pred             HHHhcccC-------CCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCCHHHeEeecCCCceeEEEcccccccccccc
Confidence            99865421       13888999999999999999999998   999999999999997654   9999999986531  


Q ss_pred             --------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          483 --------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       483 --------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                          ..++.++||||||+++|||++|+.||......   ..|  .... ...........+...
T Consensus       178 ~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~---~~~--~~~i-~~~~~~~~~~~~~l~  251 (676)
T 3qa8_A          178 ELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQP---VQW--HGKV-REKSNEHIVVYDDLT  251 (676)
T ss_dssp             CCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHH---HHS--STTC-C------CCSCCCCS
T ss_pred             cccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccch---hhh--hhhh-hcccchhhhhhhhhc
Confidence                                12466899999999999999999999753211   000  0000 000000000000000


Q ss_pred             C--------cCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHH
Q 047629          543 P--------NLESFYPIDGALSLATLARACTMDKSLSRPNMAEV  578 (615)
Q Consensus       543 p--------~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev  578 (615)
                      .        .............+.+++..|++.||++|||+.|+
T Consensus       252 g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~el  295 (676)
T 3qa8_A          252 GAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQN  295 (676)
T ss_dssp             SSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTC
T ss_pred             cccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHH
Confidence            0        01123445567889999999999999999999773

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.95  E-value=2e-28  Score=263.81  Aligned_cols=215  Identities=18%  Similarity=0.167  Sum_probs=150.8

Q ss_pred             ccccccccc----ceEEEEEE--CCeEEEEEEcc----------HHHHHHHHHHHhcCC-CCcc----------c-----
Q 047629          334 NLSEHYSIG----KSVYRATI--DGKVLAVKKIK----------EDVTEELRILQRINH-ANLV----------K-----  381 (615)
Q Consensus       334 ~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei~~l~~l~H-~niv----------~-----  381 (615)
                      .|.....+|    |.||+|..  +|+.||||+++          +.+.+|+.+++.++| +|..          .     
T Consensus        79 ~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  158 (413)
T 3dzo_A           79 TLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVK  158 (413)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEEE
T ss_pred             eEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhcc
Confidence            344444555    58999997  59999999886          357899999999977 2211          1     


Q ss_pred             ------EEEEEEcC----CCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCC
Q 047629          382 ------LMGVSSDS----QGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPS  451 (615)
Q Consensus       382 ------l~g~~~~~----~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~  451 (615)
                            +..+....    ....+++|+++ +|+|.+++.......   .....++|..++.++.|++.||+|||+++   
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~---~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---  231 (413)
T 3dzo_A          159 DPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHS---STHKSLVHHARLQLTLQVIRLLASLHHYG---  231 (413)
T ss_dssp             CCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHT---TTSHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred             cCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhccc---ccCCCCCHHHHHHHHHHHHHHHHHHHhCC---
Confidence                  11111110    11356677765 689999884210000   00024889999999999999999999998   


Q ss_pred             eEecCCCCCceeeCCCCcEEEeecCCCCCCCC-----------------------------CCCCcccchhHHHHHHHHH
Q 047629          452 IVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-----------------------------DVMPKFDVFAFGVVLLELL  502 (615)
Q Consensus       452 ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-----------------------------~~~~k~DV~SfGvvl~Ell  502 (615)
                      |+||||||+|||++.++.+||+|||+++....                             .++.++|||||||++|||+
T Consensus       232 iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~g~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~ell  311 (413)
T 3dzo_A          232 LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIW  311 (413)
T ss_dssp             EECSCCCGGGEEECTTCCEEECCGGGCEETTEEECCCCCTTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHH
T ss_pred             cccCCcccceEEEecCCeEEEEeccceeecCCccccCCCCceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHH
Confidence            99999999999999999999999999854321                             1344899999999999999


Q ss_pred             cCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          503 SGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       503 tG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +|+.||......+.                    ....+..  ...++    ..+.+|+..||+.||++||++.|+++.
T Consensus       312 tg~~Pf~~~~~~~~--------------------~~~~~~~--~~~~~----~~~~~li~~~l~~dP~~Rpt~~~~l~~  364 (413)
T 3dzo_A          312 CADLPNTDDAALGG--------------------SEWIFRS--CKNIP----QPVRALLEGFLRYPKEDRLLPLQAMET  364 (413)
T ss_dssp             HSSCCCCTTGGGSC--------------------SGGGGSS--CCCCC----HHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             HCCCCCCCcchhhh--------------------HHHHHhh--cccCC----HHHHHHHHHHccCChhhCcCHHHHHhC
Confidence            99999975432110                    0111110  01223    458899999999999999998888653

>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*

Probab=99.95  E-value=1.8e-26  Score=223.20  Aligned_cols=180  Identities=21%  Similarity=0.394  Sum_probs=158.5

Q ss_pred             Cccc-ceeeecccCCCCCCHHHHHHhhCCCh--------HHHHhhcCCCCCCCCCCCCccEEeeeeeccCCC-ceeeeee
Q 047629           39 PSCK-TYVAYFAQSPEFLDLSNISDLFGVSR--------LSIARASNLVSEDTPLVPKQLLLVPIICGCTGN-QYFANIT  108 (615)
Q Consensus        39 ~~C~-~~~~y~~~~~~~~~l~~i~~lf~~~~--------~~i~~~n~~~~~~~~~~~~~~~~vP~~C~C~~~-~~~~~~~  108 (615)
                      ++|+ ||+.|+.++.  .||..||+.||++.        .+|+.+|+...+++.|.+||.|+||++|.|.++ ...+...
T Consensus         3 ~~C~~a~~~Y~V~~G--DTL~~IA~~~~vsv~~~~~~~~~~I~~~Np~l~~~~~l~~Gq~L~IP~~~~~~~~~~~~~~~~   80 (212)
T 4eby_A            3 TSCPLALASYYLENG--TTLSVINQNLNSSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPFPCECQPGDFLGHNFS   80 (212)
T ss_dssp             CCCSCEEEEEECCTT--CCHHHHHHHTCCSSSCCCSSCCHHHHTTCTTCSCTTSCCTTCEEEEEECCEEETTTEEEEEEE
T ss_pred             CCCccceEEEEeCCC--CCHHHHHHHHCCCchhccccCHHHHHHhccCCCCcCccCCCCEEEEeccccccCCccccCceE
Confidence            6899 9999999865  59999999999998        999999943445678999999999999999865 4457789


Q ss_pred             EEeecCCchhhhhhhhcCCcchHHHHHHhCCCCCCCCcCCCcEEEEEeeccCCCCCCCCCCeeEEEEEecCCCCchhHHH
Q 047629          109 YQIKKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLITYVWQPGDDVSQVG  188 (615)
Q Consensus       109 y~v~~gdt~~~ia~~~~~~L~t~~~~~~~n~~~~~~~l~~G~~~~vpl~c~C~~~~~~s~~~~~l~ty~~~~gd~~~~ia  188 (615)
                      |+|++|||++.||...|.+|++++++...|+ ++++.+.+|++|.+|..|+|++. +.+.+..++.+|.|+.||++..||
T Consensus        81 Y~V~~GDTL~~IA~~~y~~lvt~~~L~~~N~-~~~~~l~~Gq~L~IP~~~~~~~~-~~~~~~~~~~~Y~V~~GDTL~~IA  158 (212)
T 4eby_A           81 YSVRQEDTYERVAISNYANLTTMESLQARNP-FPATNIPLSATLNVLVNCSCGDE-SVSKDFGLFVTYPLRPEDSLSSIA  158 (212)
T ss_dssp             EECCTTCCHHHHHHTTTTTSSCHHHHHHHCC-SCTTCCCTTCEEEEEEECCCCCT-TTCSSCCCEEEEECCTTCCHHHHH
T ss_pred             EEecCCCcHHHHHHHhcCCCCCHHHHHHhcC-CCcccCCCCCEEEEcCCCcCCCc-ccccCCCCeEEEEECCCCcHHHHH
Confidence            9999999999999888999999999999999 88899999999999999999874 455666777899999999999999


Q ss_pred             HHhcCChhhHhhhccccCccccCccceeccccCCC
Q 047629          189 AKLNASSAAIETENEYRNFSEAVSLPVLIPVSQLP  223 (615)
Q Consensus       189 ~~F~~s~~~i~~~n~~~~~~~~~~~~~l~p~~~~p  223 (615)
                      .+||++...+..+|+..++....+. ++||.+...
T Consensus       159 ~~fgvsv~~L~~~N~~~~~~~~~g~-l~IP~~~~~  192 (212)
T 4eby_A          159 RSSGVSADILQRYNPGVNFNSGNGI-VYVPGRDPN  192 (212)
T ss_dssp             HHHTSCHHHHHHHSTTCCTTSCSSE-EEEECCCTT
T ss_pred             HHHCcCHHHHHHhcCCCccCCCCCE-EEecCCCCC
Confidence            9999999999999998777666665 889987643

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.94  E-value=1.5e-26  Score=241.89  Aligned_cols=202  Identities=15%  Similarity=0.222  Sum_probs=151.8

Q ss_pred             ceEEEEEECCeEEEEEEcc---------------HHHHHHHHHHHhcC---------CCCcccEEEEEEc----------
Q 047629          343 KSVYRATIDGKVLAVKKIK---------------EDVTEELRILQRIN---------HANLVKLMGVSSD----------  388 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~---------------~~~~~Ei~~l~~l~---------H~niv~l~g~~~~----------  388 (615)
                      |.||+|..+|+.||||+++               +.+.+|+.+|++++         |+|||++.+.+..          
T Consensus        34 g~V~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~~~~~~~~~~hp~iv~  113 (336)
T 2vuw_A           34 GEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLK  113 (336)
T ss_dssp             EEEEEEEETTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEEEEEEEESSCCHHHHH
T ss_pred             eEEEEEEeCCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhcceeEecCCCcHHHHH
Confidence            5899999999999999986               55789999999885         8888888887531          


Q ss_pred             -------------------CCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHH-hCC
Q 047629          389 -------------------SQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMH-EHA  448 (615)
Q Consensus       389 -------------------~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH-~~~  448 (615)
                                         .++..++||||+++|++.+.+...           .+++.++..++.||+.||+||| +++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~-----------~~~~~~~~~i~~qi~~aL~~lH~~~~  182 (336)
T 2vuw_A          114 AWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTK-----------LSSLATAKSILHQLTASLAVAEASLR  182 (336)
T ss_dssp             HHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTT-----------CCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhc-----------CCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence                               145799999999999777666431           2899999999999999999999 888


Q ss_pred             CCCeEecCCCCCceeeCCCC--------------------cEEEeecCCCCCCC-----------------CCCCCcccc
Q 047629          449 QPSIVHRDIRTNNIQLDSRF--------------------KAKIANFSLAAPAT-----------------NDVMPKFDV  491 (615)
Q Consensus       449 ~~~ivHrDlk~~NILld~~~--------------------~~kl~DFGla~~~~-----------------~~~~~k~DV  491 (615)
                         |+||||||+|||++.++                    .+||+|||+|+...                 ...+.++||
T Consensus       183 ---ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~~~~gt~~y~aPE~~~g~~~~~~Di  259 (336)
T 2vuw_A          183 ---FEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFDI  259 (336)
T ss_dssp             ---CBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETTEEECCCCTTCSGGGCCCSSHHHHH
T ss_pred             ---EeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCCcEEEeecccChhhhcCCCccceeh
Confidence               99999999999999887                    89999999997531                 112568999


Q ss_pred             hhHHHH-HHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc--CCcCCCCCChHHHHHHHHHHHHhhhcC
Q 047629          492 FAFGVV-LLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM--DPNLESFYPIDGALSLATLARACTMDK  568 (615)
Q Consensus       492 ~SfGvv-l~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--dp~l~~~~~~~~~~~l~~l~~~C~~~d  568 (615)
                      ||+|++ .+++++|..|+..       ..|  ....       ...+....  ........+......+.+|+.+|++.|
T Consensus       260 wsl~~~~~~~~~~g~~p~~~-------~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~d  323 (336)
T 2vuw_A          260 YRLMKKENNNRWGEYHPYSN-------VLW--LHYL-------TDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFS  323 (336)
T ss_dssp             HHHHHHHHTTCTTSCCTHHH-------HHH--HHHH-------HHHHHHTCCCSSCCCSHHHHHHHHHHHHHHHHGGGSS
T ss_pred             hhhhCCCCcccccccCCCcc-------hhh--hhHH-------HHhhhhhhccCcccchhhhhhcCHHHHHHHHHHhccC
Confidence            998777 7788889988732       111  1111       01111111  111111123356678999999999966


Q ss_pred             CCCCCCHHHHH
Q 047629          569 SLSRPNMAEVV  579 (615)
Q Consensus       569 P~~RPsm~ev~  579 (615)
                           |++|++
T Consensus       324 -----sa~e~l  329 (336)
T 2vuw_A          324 -----SATDLL  329 (336)
T ss_dssp             -----SHHHHH
T ss_pred             -----CHHHHH
Confidence                 888887

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.89  E-value=2.8e-23  Score=232.14  Aligned_cols=141  Identities=18%  Similarity=0.253  Sum_probs=115.5

Q ss_pred             CCeEEEEEEcc-----------------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          351 DGKVLAVKKIK-----------------EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       351 ~g~~vAvK~~~-----------------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      .|+.+|||.+.                 +++.+|+++|+++ +|+||+++++++.+ ++..||||||+++|+|.++|...
T Consensus       258 fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed-~~~~yLVMEyv~G~~L~d~i~~~  336 (569)
T 4azs_A          258 FGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGEN-AQSGWLVMEKLPGRLLSDMLAAG  336 (569)
T ss_dssp             ECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEEC-SSEEEEEEECCCSEEHHHHHHTT
T ss_pred             ccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEE-CCEEEEEEecCCCCcHHHHHHhC
Confidence            68889999884                 2478899999999 79999999999875 45899999999999999999865


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC-CCCcccc
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND-VMPKFDV  491 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~-~~~k~DV  491 (615)
                      ..          ++..   +|+.||+.||+|+|+++   ||||||||+|||+++++++||+|||+|+..... ....+++
T Consensus       337 ~~----------l~~~---~I~~QIl~AL~ylH~~G---IIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~~~~~t~v  400 (569)
T 4azs_A          337 EE----------IDRE---KILGSLLRSLAALEKQG---FWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCSWPTNLV  400 (569)
T ss_dssp             CC----------CCHH---HHHHHHHHHHHHHHHTT---CEESCCCGGGEEECTTSCEEECCCTTEESCC---CCSHHHH
T ss_pred             CC----------CCHH---HHHHHHHHHHHHHHHCC---ceeccCchHhEEECCCCCEEEeecccCeeCCCCCccccCce
Confidence            42          5543   47899999999999998   999999999999999999999999999876543 3456778


Q ss_pred             hhHHHHHHHHHcCCCCC
Q 047629          492 FAFGVVLLELLSGKKAT  508 (615)
Q Consensus       492 ~SfGvvl~ElltG~~p~  508 (615)
                      |+.|.+..|+++|+.++
T Consensus       401 GTp~YmAPE~l~g~~~~  417 (569)
T 4azs_A          401 QSFFVFVNELFAENKSW  417 (569)
T ss_dssp             HHHHHHHHHHC------
T ss_pred             echhhccHHHhCCCCCC
Confidence            88888888888876543

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.79  E-value=2.4e-19  Score=199.20  Aligned_cols=117  Identities=16%  Similarity=0.238  Sum_probs=100.7

Q ss_pred             ceEEEEEECCeEEEEEEcc---------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATIDGKVLAVKKIK---------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~---------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      +.||+|...++.+++|+..               +.+.+|+++|++++|+||+++..++... ...+|||||+++|+|.+
T Consensus       350 g~Vy~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~-~~~~lVmE~~~ggsL~~  428 (540)
T 3en9_A          350 ADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDL-DNKRIMMSYINGKLAKD  428 (540)
T ss_dssp             EEEEEEECSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEET-TTTEEEEECCCSEEHHH
T ss_pred             EEEEEEEECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeC-CccEEEEECCCCCCHHH
Confidence            4899998899999999752               2368999999999999999555555443 36799999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN  483 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~  483 (615)
                      ++..                  +..++.|++.||+|||+++   |+||||||+|||++.  ++||+|||+++....
T Consensus       429 ~l~~------------------~~~i~~qi~~aL~~LH~~g---IiHrDiKp~NILl~~--~~kL~DFGla~~~~~  481 (540)
T 3en9_A          429 VIED------------------NLDIAYKIGEIVGKLHKND---VIHNDLTTSNFIFDK--DLYIIDFGLGKISNL  481 (540)
T ss_dssp             HSTT------------------CTHHHHHHHHHHHHHHHTT---EECTTCCTTSEEESS--SEEECCCTTCEECCC
T ss_pred             HHHH------------------HHHHHHHHHHHHHHHHHCc---CccCCCCHHHEEECC--eEEEEECccCEECCC
Confidence            9864                  2478999999999999998   999999999999999  999999999987654

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.73  E-value=1.2e-17  Score=170.27  Aligned_cols=116  Identities=16%  Similarity=0.169  Sum_probs=95.7

Q ss_pred             ceEEEEEE-CCeEEEEEEcc-------------------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEE
Q 047629          343 KSVYRATI-DGKVLAVKKIK-------------------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV  396 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~-------------------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV  396 (615)
                      |.||+|.. +|+.||||.++                         ..+.+|+++|++++|   +++.+++..  +..++|
T Consensus       104 g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~---~~v~~~~~~--~~~~lv  178 (282)
T 1zar_A          104 SAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQG---LAVPKVYAW--EGNAVL  178 (282)
T ss_dssp             EEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTT---SSSCCEEEE--ETTEEE
T ss_pred             ceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccC---CCcCeEEec--cceEEE
Confidence            58999998 68999999984                         236789999999994   555554432  357999


Q ss_pred             EeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecC
Q 047629          397 YEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFS  476 (615)
Q Consensus       397 ~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  476 (615)
                      |||+++|+|.+ +...                ....++.|++.||.|||+++   |+||||||+|||++ ++.+||+|||
T Consensus       179 mE~~~g~~L~~-l~~~----------------~~~~i~~qi~~~l~~lH~~g---iiHrDlkp~NILl~-~~~vkl~DFG  237 (282)
T 1zar_A          179 MELIDAKELYR-VRVE----------------NPDEVLDMILEEVAKFYHRG---IVHGDLSQYNVLVS-EEGIWIIDFP  237 (282)
T ss_dssp             EECCCCEEGGG-CCCS----------------CHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEEE-TTEEEECCCT
T ss_pred             EEecCCCcHHH-cchh----------------hHHHHHHHHHHHHHHHHHCC---CEeCCCCHHHEEEE-CCcEEEEECC
Confidence            99999999998 4211                12368999999999999998   99999999999999 9999999999


Q ss_pred             CCCCCCCC
Q 047629          477 LAAPATND  484 (615)
Q Consensus       477 la~~~~~~  484 (615)
                      +++.....
T Consensus       238 ~a~~~~~~  245 (282)
T 1zar_A          238 QSVEVGEE  245 (282)
T ss_dssp             TCEETTST
T ss_pred             CCeECCCC
Confidence            99876543

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.60  E-value=1.8e-15  Score=151.98  Aligned_cols=117  Identities=23%  Similarity=0.236  Sum_probs=92.5

Q ss_pred             ceEEEEEE--CCeE--EEEEEcc-------------------------------HHHHHHHHHHHhcCCCCc--ccEEEE
Q 047629          343 KSVYRATI--DGKV--LAVKKIK-------------------------------EDVTEELRILQRINHANL--VKLMGV  385 (615)
Q Consensus       343 ~~Vy~~~~--~g~~--vAvK~~~-------------------------------~~~~~Ei~~l~~l~H~ni--v~l~g~  385 (615)
                      +.||+|..  +|+.  ||||.++                               ..+.+|+.+|.+++|+++  ..++++
T Consensus        61 g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~  140 (258)
T 1zth_A           61 ANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTY  140 (258)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEE
T ss_pred             EEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEc
Confidence            48999998  8999  9999752                               146789999999988864  344442


Q ss_pred             EEcCCCcEEEEEeecC-CC----CHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHH-hCCCCCeEecCCCC
Q 047629          386 SSDSQGNRFLVYEYAE-NG----SLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMH-EHAQPSIVHRDIRT  459 (615)
Q Consensus       386 ~~~~~~~~~lV~E~~~-~G----sL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH-~~~~~~ivHrDlk~  459 (615)
                           ...+|||||+. +|    +|.++...             +++.....++.|++.||.||| +.+   |+||||||
T Consensus       141 -----~~~~lVmE~~g~~g~~~~~L~~~~~~-------------~~~~~~~~i~~qi~~~l~~lH~~~g---ivHrDlkp  199 (258)
T 1zth_A          141 -----MKNVLLMEFIGEDELPAPTLVELGRE-------------LKELDVEGIFNDVVENVKRLYQEAE---LVHADLSE  199 (258)
T ss_dssp             -----ETTEEEEECCEETTEECCBHHHHGGG-------------GGGSCHHHHHHHHHHHHHHHHHTSC---EECSSCST
T ss_pred             -----CCCEEEEEecCCCCCccccHHHHhhc-------------cChHHHHHHHHHHHHHHHHHHHHCC---EEeCCCCH
Confidence                 14689999994 24    67666432             223456788999999999999 887   99999999


Q ss_pred             CceeeCCCCcEEEeecCCCCCCC
Q 047629          460 NNIQLDSRFKAKIANFSLAAPAT  482 (615)
Q Consensus       460 ~NILld~~~~~kl~DFGla~~~~  482 (615)
                      +|||++.  .++|+|||+|....
T Consensus       200 ~NILl~~--~~~liDFG~a~~~~  220 (258)
T 1zth_A          200 YNIMYID--KVYFIDMGQAVTLR  220 (258)
T ss_dssp             TSEEESS--SEEECCCTTCEETT
T ss_pred             HHEEEcC--cEEEEECcccccCC
Confidence            9999998  99999999987653

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.27  E-value=7.9e-12  Score=131.56  Aligned_cols=115  Identities=11%  Similarity=0.154  Sum_probs=84.8

Q ss_pred             ceEEEEEE-CCeEEEEEEccH---------------------H--------HHHHHHHHHhcCCCCcc--cEEEEEEcCC
Q 047629          343 KSVYRATI-DGKVLAVKKIKE---------------------D--------VTEELRILQRINHANLV--KLMGVSSDSQ  390 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~~---------------------~--------~~~Ei~~l~~l~H~niv--~l~g~~~~~~  390 (615)
                      +.||+|.. +|+.||||.++.                     .        ...|...|.++++.++.  +.+++  .  
T Consensus       109 a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~vp~p~~~--~--  184 (397)
T 4gyi_A          109 SDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFPVPEPIAQ--S--  184 (397)
T ss_dssp             EEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCEEEE--E--
T ss_pred             eEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeec--c--
Confidence            48999987 799999997631                     1        12466777777555442  23322  1  


Q ss_pred             CcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC--
Q 047629          391 GNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF--  468 (615)
Q Consensus       391 ~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~--  468 (615)
                       ..+|||||+++++|.++....                ....++.|++.+|.|||+++   ||||||||.|||+++++  
T Consensus       185 -~~~LVME~i~G~~L~~l~~~~----------------~~~~l~~qll~~l~~lH~~g---IVHrDLKp~NILl~~dgd~  244 (397)
T 4gyi_A          185 -RHTIVMSLVDALPMRQVSSVP----------------DPASLYADLIALILRLAKHG---LIHGDFNEFNILIREEKDA  244 (397)
T ss_dssp             -TTEEEEECCSCEEGGGCCCCS----------------CHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEEEEEECS
T ss_pred             -CceEEEEecCCccHhhhcccH----------------HHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHEEEeCCCCc
Confidence             237999999998887654211                12457889999999999998   99999999999998876  


Q ss_pred             --------cEEEeecCCCCCC
Q 047629          469 --------KAKIANFSLAAPA  481 (615)
Q Consensus       469 --------~~kl~DFGla~~~  481 (615)
                              .+.|.||+-+...
T Consensus       245 ~d~~~~~~~~~iID~~Q~V~~  265 (397)
T 4gyi_A          245 EDPSSITLTPIIIXFPQMVSM  265 (397)
T ss_dssp             SCTTSEEEEEEECCCTTCEET
T ss_pred             ccccccccceEEEEeCCcccC
Confidence                    3899999987544

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.94  E-value=4.7e-09  Score=104.77  Aligned_cols=122  Identities=14%  Similarity=0.160  Sum_probs=96.3

Q ss_pred             ceEEEEEECCeEEEEEEccH-------HHHHHHHHHHhcC-CCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATIDGKVLAVKKIKE-------DVTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~~-------~~~~Ei~~l~~l~-H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      ..||+....|+.+++|....       .+.+|.++++.+. |.++.++++++.+ .+..++||||+++.+|.+.+...  
T Consensus        28 ~~v~~~~~~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~-~~~~~lv~e~i~G~~l~~~~~~~--  104 (263)
T 3tm0_A           28 AKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERH-DGWSNLLMSEADGVLCSEEYEDE--  104 (263)
T ss_dssp             SEEEEEECSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEE-TTEEEEEEECCSSEEHHHHCCTT--
T ss_pred             CeEEEEECCCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEec-CCceEEEEEecCCeehhhccCCc--
Confidence            46999887789999999863       4889999999994 6677789998765 45789999999999998764211  


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCC----------------------------------------------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA----------------------------------------------  448 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~----------------------------------------------  448 (615)
                                   .+...++.+++.+|..||+..                                              
T Consensus       105 -------------~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  171 (263)
T 3tm0_A          105 -------------QSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELY  171 (263)
T ss_dssp             -------------TCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHHHHH
T ss_pred             -------------ccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccccCCCHHHHH
Confidence                         122467889999999999811                                              


Q ss_pred             ----------CCCeEecCCCCCceeeCCCCcEEEeecCCCCC
Q 047629          449 ----------QPSIVHRDIRTNNIQLDSRFKAKIANFSLAAP  480 (615)
Q Consensus       449 ----------~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  480 (615)
                                .+.++|+|+++.|||++++..+.|.||+.+..
T Consensus       172 ~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T 3tm0_A          172 DFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             HHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             HHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence                      14599999999999998765667999997654

>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*

Probab=98.85  E-value=7.8e-09  Score=99.64  Aligned_cols=112  Identities=17%  Similarity=0.372  Sum_probs=88.1

Q ss_pred             eeeeEEeecCCchhhhhhhhcCCcc-----hHHHHHHhCCCC-CCCCcCCCcEEEEEeeccCCCCCCCCCCeeEEEEEec
Q 047629          105 ANITYQIKKGDSYYLVSITSFENLT-----NWHAVLEMNPGI-NPNLLQIGVKVTFPLFCKCPSKTNMEDGIENLITYVW  178 (615)
Q Consensus       105 ~~~~y~v~~gdt~~~ia~~~~~~L~-----t~~~~~~~n~~~-~~~~l~~G~~~~vpl~c~C~~~~~~s~~~~~l~ty~~  178 (615)
                      +-..|+|++|||++.||....-...     .+.++...||.+ +++.+.+|+.|.+|..|.|.+..    ......+|.|
T Consensus         8 a~~~Y~V~~GDTL~~IA~~~~vsv~~~~~~~~~~I~~~Np~l~~~~~l~~Gq~L~IP~~~~~~~~~----~~~~~~~Y~V   83 (212)
T 4eby_A            8 ALASYYLENGTTLSVINQNLNSSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPFPCECQPGD----FLGHNFSYSV   83 (212)
T ss_dssp             EEEEEECCTTCCHHHHHHHTCCSSSCCCSSCCHHHHTTCTTCSCTTSCCTTCEEEEEECCEEETTT----EEEEEEEEEC
T ss_pred             ceEEEEeCCCCCHHHHHHHHCCCchhccccCHHHHHHhccCCCCcCccCCCCEEEEeccccccCCc----cccCceEEEe
Confidence            5568999999999999986543331     158899999767 58899999999999999996421    1223468999


Q ss_pred             CCCCchhHHH-HHhc--CChhhHhhhccccCccccCccceecccc
Q 047629          179 QPGDDVSQVG-AKLN--ASSAAIETENEYRNFSEAVSLPVLIPVS  220 (615)
Q Consensus       179 ~~gd~~~~ia-~~F~--~s~~~i~~~n~~~~~~~~~~~~~l~p~~  220 (615)
                      +.||++..|| .+|+  ++...+...|........+|..+.||..
T Consensus        84 ~~GDTL~~IA~~~y~~lvt~~~L~~~N~~~~~~l~~Gq~L~IP~~  128 (212)
T 4eby_A           84 RQEDTYERVAISNYANLTTMESLQARNPFPATNIPLSATLNVLVN  128 (212)
T ss_dssp             CTTCCHHHHHHTTTTTSSCHHHHHHHCCSCTTCCCTTCEEEEEEE
T ss_pred             cCCCcHHHHHHHhcCCCCCHHHHHHhcCCCcccCCCCCEEEEcCC
Confidence            9999999999 7999  9999999999864444556777888864

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.75  E-value=2.8e-08  Score=98.42  Aligned_cols=120  Identities=17%  Similarity=0.203  Sum_probs=88.5

Q ss_pred             ceEEEEEE-CCeEEEEEEccH----HHHHHHHHHHhcCCCCc--ccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIKE----DVTEELRILQRINHANL--VKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~~----~~~~Ei~~l~~l~H~ni--v~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      +.||+... +|+.+++|....    .+..|+++++.+++.++  .+++++..+ ++..++||||+++.+|.  ...    
T Consensus        34 ~~v~~~~~~~g~~~vlK~~~~~~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~-~~~~~~v~e~i~G~~l~--~~~----  106 (264)
T 1nd4_A           34 AAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTE-AGRDWLLLGEVPGQDLL--SSH----  106 (264)
T ss_dssp             CEEEEEECTTSCCEEEEEECSCTTSCHHHHHHHHHHHHTTTCCBCCEEEEEEC-SSCEEEEEECCSSEETT--TSC----
T ss_pred             ceEEEEecCCCCeEEEEeCCcccchhhhHHHHHHHHHHhCCCCCCeEEEeccC-CCCCEEEEEecCCcccC--cCc----
Confidence            57999876 577899998753    47799999999965554  468887654 34689999999998884  211    


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCC-----------------------------------------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA-----------------------------------------------  448 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----------------------------------------------  448 (615)
                               .+   ...++.+++..|..||+..                                               
T Consensus       107 ---------~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  174 (264)
T 1nd4_A          107 ---------LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARL  174 (264)
T ss_dssp             ---------CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHH
T ss_pred             ---------CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHHH
Confidence                     11   1245667777777777642                                               


Q ss_pred             --------CCCeEecCCCCCceeeCCCCcEEEeecCCCCCC
Q 047629          449 --------QPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA  481 (615)
Q Consensus       449 --------~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  481 (615)
                              .+.++|+|++|.|||++++..++|.|||.+...
T Consensus       175 ~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~g  215 (264)
T 1nd4_A          175 KARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVA  215 (264)
T ss_dssp             HHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEEE
T ss_pred             HHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcccC
Confidence                    123999999999999988766779999987543

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.71  E-value=6.6e-08  Score=101.22  Aligned_cols=125  Identities=16%  Similarity=0.285  Sum_probs=97.5

Q ss_pred             eEEEEEECCeEEEEEEcc----------HHHHHHHHHHHhcC--CCCcccEEEEEEcCC--CcEEEEEeecCCCCHHHhh
Q 047629          344 SVYRATIDGKVLAVKKIK----------EDVTEELRILQRIN--HANLVKLMGVSSDSQ--GNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       344 ~Vy~~~~~g~~vAvK~~~----------~~~~~Ei~~l~~l~--H~niv~l~g~~~~~~--~~~~lV~E~~~~GsL~~~L  409 (615)
                      .+|+....+..+++|+..          .++.+|..+++.++  +.++.++++++.+.+  +..++||||+++..+.+..
T Consensus        53 ~~y~v~~~~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme~v~G~~l~~~~  132 (359)
T 3dxp_A           53 PTFKLVTPGQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIMEFVSGRVLWDQS  132 (359)
T ss_dssp             CEEEEECSSCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEECCCCBCCCCTT
T ss_pred             eEEEEEECCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEEecCCeecCCCc
Confidence            688888777788888775          24678999999997  455788998876432  3579999999987774321


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCC-----------------------------------------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA-----------------------------------------  448 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----------------------------------------  448 (615)
                      .            ..++..++..++.++++.|..||...                                         
T Consensus       133 ~------------~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (359)
T 3dxp_A          133 L------------PGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDSL  200 (359)
T ss_dssp             C------------TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred             c------------ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHHH
Confidence            1            02778889999999999999999831                                         


Q ss_pred             --------------CCCeEecCCCCCceeeCCCCc--EEEeecCCCCC
Q 047629          449 --------------QPSIVHRDIRTNNIQLDSRFK--AKIANFSLAAP  480 (615)
Q Consensus       449 --------------~~~ivHrDlk~~NILld~~~~--~kl~DFGla~~  480 (615)
                                    .+.++|+|+++.|||++.++.  +.|.||+.+..
T Consensus       201 ~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          201 MDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             HHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             HHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence                          256999999999999997753  68999998764

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.28  E-value=1.9e-06  Score=87.83  Aligned_cols=144  Identities=21%  Similarity=0.225  Sum_probs=98.7

Q ss_pred             eEEEEEEcc-----HHHHHHHHHHHhc-CCCC--cccEEEEEEcCC--CcEEEEEeecCCCCHHHhhccCCCCCCCCCcc
Q 047629          353 KVLAVKKIK-----EDVTEELRILQRI-NHAN--LVKLMGVSSDSQ--GNRFLVYEYAENGSLDKWLHPKSKSSSSSGSV  422 (615)
Q Consensus       353 ~~vAvK~~~-----~~~~~Ei~~l~~l-~H~n--iv~l~g~~~~~~--~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~  422 (615)
                      +.+++|...     ..+.+|.++|+.+ .+..  +.+.++.....+  +..|+|||++++.+|.+....           
T Consensus        41 ~~~vlR~~~~~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G~~l~~~~~~-----------  109 (304)
T 3sg8_A           41 RDFIFKFPKHSRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKGVPLTPLLLN-----------  109 (304)
T ss_dssp             TSEEEEEESSHHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCCCEECCHHHHH-----------
T ss_pred             CEEEEEecCCcchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccCCeECCccccc-----------
Confidence            457788754     3477899999988 4433  335555432222  124889999999887653321           


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHhC-------------------------------------------------------
Q 047629          423 IFLTWSQRLRVALDVANGLQYMHEH-------------------------------------------------------  447 (615)
Q Consensus       423 ~~l~~~~~~~i~~~ia~gL~yLH~~-------------------------------------------------------  447 (615)
                       .++..++..++.+++..|..||..                                                       
T Consensus       110 -~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~  188 (304)
T 3sg8_A          110 -NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDDFYRDILENEIYFK  188 (304)
T ss_dssp             -TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTCGGGTC
T ss_pred             -cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHHHHHhcccccc
Confidence             266777788888888888888862                                                       


Q ss_pred             CCCCeEecCCCCCceeeCC--CCcEEEeecCCCCCCC----------C--CCC------------C------------cc
Q 047629          448 AQPSIVHRDIRTNNIQLDS--RFKAKIANFSLAAPAT----------N--DVM------------P------------KF  489 (615)
Q Consensus       448 ~~~~ivHrDlk~~NILld~--~~~~kl~DFGla~~~~----------~--~~~------------~------------k~  489 (615)
                      ..+.++|+|+++.||++++  ...+.|.||+.+....          .  .+.            .            ..
T Consensus       189 ~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~r~~~~~  268 (304)
T 3sg8_A          189 YYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHKDIPTVLEKYRMKE  268 (304)
T ss_dssp             CCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred             CCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            1245899999999999998  4567899999874321          0  011            0            14


Q ss_pred             cchhHHHHHHHHHcCCCCC
Q 047629          490 DVFAFGVVLLELLSGKKAT  508 (615)
Q Consensus       490 DV~SfGvvl~ElltG~~p~  508 (615)
                      +.|++|.++|++.+|+.++
T Consensus       269 ~~~~l~~~~~~~~~g~~~~  287 (304)
T 3sg8_A          269 KYWSFEKIIYGKEYGYMDW  287 (304)
T ss_dssp             HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHH
Confidence            7788999999999887664

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=97.98  E-value=6.2e-05  Score=76.74  Aligned_cols=123  Identities=18%  Similarity=0.240  Sum_probs=83.0

Q ss_pred             eEEEEEECCeEEEEEEcc-----HHHHHHHHHHHhcCCC---CcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          344 SVYRATIDGKVLAVKKIK-----EDVTEELRILQRINHA---NLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       344 ~Vy~~~~~g~~vAvK~~~-----~~~~~Ei~~l~~l~H~---niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      .||+.   |+.+++|.-+     ..+.+|.++|..+.+.   .+-+.+.++...++..++|||++++.+|.+....    
T Consensus        34 ~v~~v---g~~~VlR~~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~~l~~~~~~----  106 (306)
T 3tdw_A           34 YAILV---NGDWVFRFPKSQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQILGEDGMA----  106 (306)
T ss_dssp             EEEEE---TTTEEEEEESSHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCSEECHHHHHT----
T ss_pred             eEEEE---CCEEEEEecCCchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCCeECchhhhh----
Confidence            46665   5667778754     3477899999999753   3557777765445678999999998887663211    


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhC------------------------------------------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEH------------------------------------------------  447 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~------------------------------------------------  447 (615)
                              .++..++..++.++++.|..||..                                                
T Consensus       107 --------~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  178 (306)
T 3tdw_A          107 --------VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTLRFQS  178 (306)
T ss_dssp             --------TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred             --------hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence                    133444444455555555554432                                                


Q ss_pred             ---------CCCCeEecCCCCCceeeCC---CCc-EEEeecCCCCCC
Q 047629          448 ---------AQPSIVHRDIRTNNIQLDS---RFK-AKIANFSLAAPA  481 (615)
Q Consensus       448 ---------~~~~ivHrDlk~~NILld~---~~~-~kl~DFGla~~~  481 (615)
                               ..+.++|+|+++.|||++.   ++. ..|.||+.+...
T Consensus       179 ~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~g  225 (306)
T 3tdw_A          179 YMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAIS  225 (306)
T ss_dssp             HHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEE
T ss_pred             HHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCC
Confidence                     2345799999999999987   455 489999987653

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=97.98  E-value=3.9e-05  Score=76.31  Aligned_cols=124  Identities=17%  Similarity=0.163  Sum_probs=85.1

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----HHHHHHHHHHHhcC-CCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK----EDVTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----~~~~~Ei~~l~~l~-H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      ..||+-..  ++..+.+|+-.    .++.+|...|+.+. +--+-++++++.+. +..++|||++++.++.+......  
T Consensus        39 ~~v~rl~~~~~~~~~~lk~~~~~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~-~~~~lvme~l~G~~~~~~~~~~~--  115 (272)
T 4gkh_A           39 ATIYRLYGKPNAPELFLKHGKGSVANDVTDEMVRLNWLTAFMPLPTIKHFIRTP-DDAWLLTTAIPGKTAFQVLEEYP--  115 (272)
T ss_dssp             CEEEEEECCTTCCCEEEEEEETHHHHHHHHHHHHHHHHTTTSCCCCEEEEEEET-TEEEEEEECCCSEEHHHHHHHCG--
T ss_pred             CeEEEEEecCCCeEEEEEECCCCCHhHHHHHHHHHHHhccCCCcCeEEEEEEEC-CeEEEEEEeeCCccccccccCCH--
Confidence            36888665  45678899875    35778999999884 33456788887654 47899999999887766543211  


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHh-------------------------------------------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHE-------------------------------------------------  446 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-------------------------------------------------  446 (615)
                                  .....++.+++..|.-||.                                                 
T Consensus       116 ------------~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  183 (272)
T 4gkh_A          116 ------------DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKEM  183 (272)
T ss_dssp             ------------GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHHH
Confidence                        1122344445555555553                                                 


Q ss_pred             --C----CCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC
Q 047629          447 --H----AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA  481 (615)
Q Consensus       447 --~----~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  481 (615)
                        .    ..+.++|+|+.+.|||++++..+-|.||+.+...
T Consensus       184 ~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~g  224 (272)
T 4gkh_A          184 HKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIA  224 (272)
T ss_dssp             HTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEEE
T ss_pred             HhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccccC
Confidence              1    1224899999999999998777779999987543

>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}

Probab=97.47  E-value=2.7e-05  Score=71.90  Aligned_cols=94  Identities=13%  Similarity=0.042  Sum_probs=68.8

Q ss_pred             eeeeEEeecCCchhhhhhhhcCCcchHHHHHHhCCCCCCCCcCCCcEEEEEeeccCCCC-CCCCCCeeEEEEEecCCCCc
Q 047629          105 ANITYQIKKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFPLFCKCPSK-TNMEDGIENLITYVWQPGDD  183 (615)
Q Consensus       105 ~~~~y~v~~gdt~~~ia~~~~~~L~t~~~~~~~n~~~~~~~l~~G~~~~vpl~c~C~~~-~~~s~~~~~l~ty~~~~gd~  183 (615)
                      +...|+|++|||++.||...  + .+|.++...|...+|+.|.+|++|.+|..-.-+.. ....  ..--..|+++.||+
T Consensus        61 ~~~~y~V~~GDTL~~IA~~~--~-~~~~~l~~~N~~~~~~~i~~Gq~L~ip~~~~~~~~~~~~~--~~~~~~~~v~~Gdt  135 (167)
T 2l9y_A           61 GTATVTVQQGDTLRDIGRRF--D-CDFHEIARRNNIQNEDLIYPGQVLQVPTKGGSGGGAGNFW--DSARDVRLVDGGKV  135 (167)
T ss_dssp             SCEEEEECTTCCHHHHHHHT--T-CCHHHHHHHHTCCGGGCCCTTEEEEESCCCCCSSSSCCGG--GGEEEEEEETTTTE
T ss_pred             CCceEEECCCCcHHHHHHHc--C-CCHHHHHHHcCCCCcccccCCCEEEEcCCCCccccccccc--cccceEEEeCCcCC
Confidence            45789999999999999864  3 56899999998888899999999999964321100 1111  11124688999999


Q ss_pred             hhHHHHHhcCChhhHhhhcc
Q 047629          184 VSQVGAKLNASSAAIETENE  203 (615)
Q Consensus       184 ~~~ia~~F~~s~~~i~~~n~  203 (615)
                      +..|+.++|.+....+..|.
T Consensus       136 L~aIA~r~G~~v~s~i~Ln~  155 (167)
T 2l9y_A          136 LEAELRYSGGWNRSRIYLDE  155 (167)
T ss_dssp             EEEEEEETTEEEEEEECGGG
T ss_pred             hHHHHHHcCCceEEEEEccc
Confidence            99999888876655555543

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.45  E-value=0.00027  Score=73.38  Aligned_cols=64  Identities=9%  Similarity=0.215  Sum_probs=45.1

Q ss_pred             eEEEEEEC--------CeEEEEEEcc----------HHHHHHHHHHHhcCC---CCcccEEEEEEcCC--CcEEEEEeec
Q 047629          344 SVYRATID--------GKVLAVKKIK----------EDVTEELRILQRINH---ANLVKLMGVSSDSQ--GNRFLVYEYA  400 (615)
Q Consensus       344 ~Vy~~~~~--------g~~vAvK~~~----------~~~~~Ei~~l~~l~H---~niv~l~g~~~~~~--~~~~lV~E~~  400 (615)
                      .+|+....        |+.+++|.-.          ..+.+|..+|+.+..   -.+-++++++.+..  +..++||||+
T Consensus        36 ~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~g~~~~v~e~l  115 (357)
T 3ats_A           36 ETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVLGTPFFLMDYV  115 (357)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTTSSCEEEEECC
T ss_pred             eEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCccCCceEEEEec
Confidence            57776654        6778888753          246789999998843   35667888765432  3568999999


Q ss_pred             CCCCHHH
Q 047629          401 ENGSLDK  407 (615)
Q Consensus       401 ~~GsL~~  407 (615)
                      ++..+.+
T Consensus       116 ~G~~l~~  122 (357)
T 3ats_A          116 EGVVPPD  122 (357)
T ss_dssp             CCBCCCB
T ss_pred             CCCChhh
Confidence            9876653

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.15  E-value=0.0025  Score=65.16  Aligned_cols=153  Identities=15%  Similarity=0.222  Sum_probs=85.2

Q ss_pred             ceEEEEEECCeEEEEEEccH---HHHHHHHHHHhcCC--CCcccEEEE-----EEcCCCcEEEEEeecCCCCHH------
Q 047629          343 KSVYRATIDGKVLAVKKIKE---DVTEELRILQRINH--ANLVKLMGV-----SSDSQGNRFLVYEYAENGSLD------  406 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~~---~~~~Ei~~l~~l~H--~niv~l~g~-----~~~~~~~~~lV~E~~~~GsL~------  406 (615)
                      ..||+...++..+++|+...   .+..|..++..+..  -.+.+++..     +....+..+++|||+++..+.      
T Consensus        46 n~~~~v~~~~~~~vlk~~~~~~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~i~G~~~~~~~~~~  125 (346)
T 2q83_A           46 ALVWKVHTDSGAVCLKRIHRPEKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDWIEGRPFELTVKQD  125 (346)
T ss_dssp             CEEEEEEETTEEEEEEEECSCHHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEECCCCBCCCTTSHHH
T ss_pred             CcEEEEEeCCCCEEEEecCCCHHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEeecCccCCCCCHHH
Confidence            47888887666799998863   34556777766631  122333321     111234678999999986542      


Q ss_pred             --------HhhccCCCCC-CCCC---cccccCHHHHH-------------------------------HHHHHHHHHHHH
Q 047629          407 --------KWLHPKSKSS-SSSG---SVIFLTWSQRL-------------------------------RVALDVANGLQY  443 (615)
Q Consensus       407 --------~~L~~~~~~~-~~~~---~~~~l~~~~~~-------------------------------~i~~~ia~gL~y  443 (615)
                              ..+|.....- .+..   ....-.|....                               .+...+...+.+
T Consensus       126 ~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (346)
T 2q83_A          126 LEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEIDGFIEDGLRIKDR  205 (346)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence                    1122111000 0000   00112343211                               111123445667


Q ss_pred             HHh----------CCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCCCCCcccchhHHHHHHHHH
Q 047629          444 MHE----------HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELL  502 (615)
Q Consensus       444 LH~----------~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~k~DV~SfGvvl~Ell  502 (615)
                      |++          ...+.++|+|+++.|||++.+..+.|.||+.+.....       +|-++.++..++
T Consensus       206 l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~g~~-------~~Dla~~l~~~~  267 (346)
T 2q83_A          206 LLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVSFDLP-------IRDLRKMIIPLL  267 (346)
T ss_dssp             HHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCEECCT-------HHHHHHHHHHHT
T ss_pred             HHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcccCCh-------HHHHHHHHHHHH
Confidence            763          1245699999999999998888999999997654322       345566666654

>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}

Probab=97.03  E-value=0.00053  Score=63.16  Aligned_cols=78  Identities=23%  Similarity=0.229  Sum_probs=60.9

Q ss_pred             ceeeecccCCCCCCHHHHHHhhCCChHHHHhhcCCCCCCCCCCCCccEEeeeeeccC---CCcee-eeeeEEeecCCchh
Q 047629           43 TYVAYFAQSPEFLDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPIICGCT---GNQYF-ANITYQIKKGDSYY  118 (615)
Q Consensus        43 ~~~~y~~~~~~~~~l~~i~~lf~~~~~~i~~~n~~~~~~~~~~~~~~~~vP~~C~C~---~~~~~-~~~~y~v~~gdt~~  118 (615)
                      +-..|+.++.+  ||..||..|+++..+|+.+|++. +++.|.+||.|.||..-.=.   ..... ....|.+++||++.
T Consensus        61 ~~~~y~V~~GD--TL~~IA~~~~~~~~~l~~~N~~~-~~~~i~~Gq~L~ip~~~~~~~~~~~~~~~~~~~~~v~~GdtL~  137 (167)
T 2l9y_A           61 GTATVTVQQGD--TLRDIGRRFDCDFHEIARRNNIQ-NEDLIYPGQVLQVPTKGGSGGGAGNFWDSARDVRLVDGGKVLE  137 (167)
T ss_dssp             SCEEEEECTTC--CHHHHHHHTTCCHHHHHHHHTCC-GGGCCCTTEEEEESCCCCCSSSSCCGGGGEEEEEEETTTTEEE
T ss_pred             CCceEEECCCC--cHHHHHHHcCCCHHHHHHHcCCC-CcccccCCCEEEEcCCCCccccccccccccceEEEeCCcCChH
Confidence            44679998765  99999999999999999999864 67899999999999752210   01111 23568899999999


Q ss_pred             hhhhh
Q 047629          119 LVSIT  123 (615)
Q Consensus       119 ~ia~~  123 (615)
                      .++..
T Consensus       138 aIA~r  142 (167)
T 2l9y_A          138 AELRY  142 (167)
T ss_dssp             EEEEE
T ss_pred             HHHHH
Confidence            99987

>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1

Probab=96.87  E-value=0.00083  Score=47.84  Aligned_cols=44  Identities=23%  Similarity=0.292  Sum_probs=38.6

Q ss_pred             eecccCCCCCCHHHHHHhhCCChHHHHhhcCCCCCCCCCCCCccEEeee
Q 047629           46 AYFAQSPEFLDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPI   94 (615)
Q Consensus        46 ~y~~~~~~~~~l~~i~~lf~~~~~~i~~~n~~~~~~~~~~~~~~~~vP~   94 (615)
                      .|..++.  .||..||..|+++..+|..+|+   +++.+.+||.+.||.
T Consensus         4 ~y~V~~G--Dtl~~Ia~~~~~~~~~l~~~N~---~~~~l~~G~~l~ip~   47 (48)
T 1e0g_A            4 TYRVRKG--DSLSSIAKRHGVNIKDVMRWNS---DTANLQPGDKLTLFV   47 (48)
T ss_dssp             EEEECTT--CCHHHHHHHHTCCHHHHHHHCS---CGGGCCTTEEEECCC
T ss_pred             EEEEcCC--CcHHHHHHHHCcCHHHHHHhCC---CCCcCCcCCEEEEec
Confidence            4777755  4999999999999999999998   467799999999996

>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.86  E-value=0.00068  Score=53.89  Aligned_cols=62  Identities=10%  Similarity=0.094  Sum_probs=49.7

Q ss_pred             CCccEEeeeeeccCCCceeeeeeEEeecCCchhhhhhhhcCCcchHHHHHHhCCCCCCCCcCCCcEEEEEeec
Q 047629           86 PKQLLLVPIICGCTGNQYFANITYQIKKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFPLFC  158 (615)
Q Consensus        86 ~~~~~~vP~~C~C~~~~~~~~~~y~v~~gdt~~~ia~~~~~~L~t~~~~~~~n~~~~~~~l~~G~~~~vpl~c  158 (615)
                      .||.+.+|..        .....|+|++|||++.||...+   +++.++...|+..+++.+.+|+++.+|..-
T Consensus         3 ~Gq~l~ip~~--------~~~~~y~V~~GDTL~~IA~~~~---~~~~~l~~~N~l~~~~~l~~Gq~l~iP~~~   64 (77)
T 2djp_A            3 SGSSGCSPVR--------ERRLEHQLEPGDTLAGLALKYG---VTMEQIKRANRLYTNDSIFLKKTLYIPILT   64 (77)
T ss_dssp             CCCCCCCCCC--------EEEEEECCCTTCCHHHHHHHHT---CCHHHHHHHHTCCCSSCGGGSSCEEEEEEC
T ss_pred             CCcEeeccCC--------CCcEEEEECCCCcHHHHHHHHC---cCHHHHHHHcCCCCccccCCCCEEEECCCC
Confidence            5788888753        2346799999999999998765   346788899987778899999999999753

>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.75  E-value=0.002  Score=51.15  Aligned_cols=50  Identities=22%  Similarity=0.371  Sum_probs=43.8

Q ss_pred             ceeeecccCCCCCCHHHHHHhhCCChHHHHhhcCCCCCCCCCCCCccEEeeee
Q 047629           43 TYVAYFAQSPEFLDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPII   95 (615)
Q Consensus        43 ~~~~y~~~~~~~~~l~~i~~lf~~~~~~i~~~n~~~~~~~~~~~~~~~~vP~~   95 (615)
                      .+..|+.++.+  ||..||..|+++..+|..+|++. +++.+.+||.|.||..
T Consensus        14 ~~~~y~V~~GD--TL~~IA~~~~~~~~~l~~~N~l~-~~~~l~~Gq~l~iP~~   63 (77)
T 2djp_A           14 RRLEHQLEPGD--TLAGLALKYGVTMEQIKRANRLY-TNDSIFLKKTLYIPIL   63 (77)
T ss_dssp             EEEEECCCTTC--CHHHHHHHHTCCHHHHHHHHTCC-CSSCGGGSSCEEEEEE
T ss_pred             CcEEEEECCCC--cHHHHHHHHCcCHHHHHHHcCCC-CccccCCCCEEEECCC
Confidence            56789998665  99999999999999999999875 4578999999999985

>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1

Probab=96.72  E-value=0.0012  Score=46.99  Aligned_cols=45  Identities=33%  Similarity=0.411  Sum_probs=38.1

Q ss_pred             eeEEeecCCchhhhhhhhcCCcchHHHHHHhCCCCCCCCcCCCcEEEEEe
Q 047629          107 ITYQIKKGDSYYLVSITSFENLTNWHAVLEMNPGINPNLLQIGVKVTFPL  156 (615)
Q Consensus       107 ~~y~v~~gdt~~~ia~~~~~~L~t~~~~~~~n~~~~~~~l~~G~~~~vpl  156 (615)
                      ..|+|++|||+..||...+-   ++.++...|+  +++.+.+|+.+.+|+
T Consensus         3 ~~y~V~~GDtl~~Ia~~~~~---~~~~l~~~N~--~~~~l~~G~~l~ip~   47 (48)
T 1e0g_A            3 ITYRVRKGDSLSSIAKRHGV---NIKDVMRWNS--DTANLQPGDKLTLFV   47 (48)
T ss_dssp             CEEEECTTCCHHHHHHHHTC---CHHHHHHHCS--CGGGCCTTEEEECCC
T ss_pred             EEEEEcCCCcHHHHHHHHCc---CHHHHHHhCC--CCCcCCcCCEEEEec
Confidence            46999999999999976643   3688889998  778899999999885

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=95.99  E-value=0.028  Score=57.35  Aligned_cols=134  Identities=11%  Similarity=0.113  Sum_probs=73.6

Q ss_pred             EEEEEEC-CeEEEEEEcc----HHHHHHHHHHHhcCCC--CcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC--
Q 047629          345 VYRATID-GKVLAVKKIK----EDVTEELRILQRINHA--NLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS--  415 (615)
Q Consensus       345 Vy~~~~~-g~~vAvK~~~----~~~~~Ei~~l~~l~H~--niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~--  415 (615)
                      +|+.... |+.+.+|...    .++..|+.++..+...  .+.+++.+.. .++  +++||++.+..+.+++......  
T Consensus        35 ~~r~~~~~~~~~vlk~~~~~~~~~~~~e~~~l~~L~~~g~~vP~v~~~d~-~~g--~ll~e~l~~~~l~~~l~~~~~~~~  111 (333)
T 3csv_A           35 YQRLRSPTGAKAVLMDWSPEEGGDTQPFVDLAQYLRNLDISAPEIYAEEH-ARG--LLLIEDLGDALFTEVINNDPAQEM  111 (333)
T ss_dssp             CEEEECTTCCEEEEEECCTTTTCCSHHHHHHHHHHHHTTCBCCCEEEEET-TTT--EEEECCCCSCBHHHHHHHCGGGHH
T ss_pred             EEEEEcCCCCeEEEEECCCCCCccccHHHHHHHHHHhCCCCCCceeeecC-CCC--EEEEeeCCCcchHHHhcCCCccHH
Confidence            5566553 6677777653    4567888888888432  3456777642 333  7899999776676554321100  


Q ss_pred             --------------CCCCCcccccCHHHHH-------H-------------HHHHHHHHHHHHH---hCCCCCeEecCCC
Q 047629          416 --------------SSSSGSVIFLTWSQRL-------R-------------VALDVANGLQYMH---EHAQPSIVHRDIR  458 (615)
Q Consensus       416 --------------~~~~~~~~~l~~~~~~-------~-------------i~~~ia~gL~yLH---~~~~~~ivHrDlk  458 (615)
                                    .........++.....       .             ....+...++.+.   ....+.++|+|+.
T Consensus       112 ~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~lvHgD~~  191 (333)
T 3csv_A          112 PLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSAQLEGDMVFVHRDFH  191 (333)
T ss_dssp             HHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCSCCEEECSCCS
T ss_pred             HHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcccCCCeeEeCCcC
Confidence                          0000000001111000       0             0011112223331   1224469999999


Q ss_pred             CCceeeCCC----CcEEEeecCCCCCC
Q 047629          459 TNNIQLDSR----FKAKIANFSLAAPA  481 (615)
Q Consensus       459 ~~NILld~~----~~~kl~DFGla~~~  481 (615)
                      +.|||++.+    ..+.|.||+.+...
T Consensus       192 ~~Nil~~~~~~~~~~~~lIDf~~a~~G  218 (333)
T 3csv_A          192 AQNLLWLPEREGLARVGVIDFQDAKLG  218 (333)
T ss_dssp             GGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred             cccEEeccCcCCCCCeEEEeCCCcCcC
Confidence            999999874    67899999987654

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=95.97  E-value=0.05  Score=55.29  Aligned_cols=131  Identities=16%  Similarity=0.229  Sum_probs=81.5

Q ss_pred             eEEEEEECCeEEEEEEcc----HHHHHHHHHHHhcC---CCCcccEEEEEEcCCCcEEEEEeecCCCCHH----------
Q 047629          344 SVYRATIDGKVLAVKKIK----EDVTEELRILQRIN---HANLVKLMGVSSDSQGNRFLVYEYAENGSLD----------  406 (615)
Q Consensus       344 ~Vy~~~~~g~~vAvK~~~----~~~~~Ei~~l~~l~---H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~----------  406 (615)
                      .+|+...++..+.+|...    ..+..|.+.|+.+.   ...+.++++++.. ++..++||||+++..+.          
T Consensus        51 ~~y~v~~~~~~~vlK~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~-~g~~~lvme~l~G~~~~~~~~~~lG~~  129 (312)
T 3jr1_A           51 EIWLINDEVQTVFVKINERSYRSMFRAEADQLALLAKTNSINVPLVYGIGNS-QGHSFLLLEALNKSKNKQSSFTIFAEK  129 (312)
T ss_dssp             EEEEEESSSCEEEEEEEEGGGHHHHHHHHHHHHHHHHTTSSBCCCEEEEEEC-SSEEEEEEECCCCCCCCTTHHHHHHHH
T ss_pred             eeeEEEECCCeEEEEeCCcccHHHHHHHHHHHHHHHhhCCCCcceEEEEeec-CCceEEEEEeccCCCCCchhHHHHHHH
Confidence            688877777888999875    34788999999884   3567788888764 35789999999987652          


Q ss_pred             -HhhccCCCCCC---CCC----c-c----cccCHHHHH---HHHH--H--------------HHHHH-HHHHh-CCCCCe
Q 047629          407 -KWLHPKSKSSS---SSG----S-V----IFLTWSQRL---RVAL--D--------------VANGL-QYMHE-HAQPSI  452 (615)
Q Consensus       407 -~~L~~~~~~~~---~~~----~-~----~~l~~~~~~---~i~~--~--------------ia~gL-~yLH~-~~~~~i  452 (615)
                       ..||.......   ...    . +    -.-+|....   ++..  +              +...+ ..|.. ...|.+
T Consensus       130 LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~l~~~L~~~~~~~~l  209 (312)
T 3jr1_A          130 IAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIVADTLSKHNPKPSI  209 (312)
T ss_dssp             HHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHHHHHHHTTCCCCCEE
T ss_pred             HHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCcee
Confidence             12333221000   000    0 0    012565432   1111  1              11111 23332 235789


Q ss_pred             EecCCCCCceeeCCCCcEEEeecC
Q 047629          453 VHRDIRTNNIQLDSRFKAKIANFS  476 (615)
Q Consensus       453 vHrDlk~~NILld~~~~~kl~DFG  476 (615)
                      +|+|+.+.|++++.++ +.|.||.
T Consensus       210 ~HgD~~~~N~l~~~~~-~~~iD~~  232 (312)
T 3jr1_A          210 LHGNLWIENCIQVDDK-IFVCNPA  232 (312)
T ss_dssp             ECSSCSGGGEEEETTE-EEECSCC
T ss_pred             EeCCCCcCcEeecCCC-eEEEcCc
Confidence            9999999999999887 8899974

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=95.81  E-value=0.038  Score=58.49  Aligned_cols=31  Identities=10%  Similarity=0.273  Sum_probs=27.0

Q ss_pred             CCCeEecCCCCCceeeCCCCcEEEeecCCCCC
Q 047629          449 QPSIVHRDIRTNNIQLDSRFKAKIANFSLAAP  480 (615)
Q Consensus       449 ~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  480 (615)
                      .+.++|+|+++.|||++.+. +++.||+.+..
T Consensus       231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~  261 (420)
T 2pyw_A          231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFY  261 (420)
T ss_dssp             CCEEECSCCSGGGEEECSSC-EEECCCTTCEE
T ss_pred             CCeEEecCCCCCcEEEeCCC-CEEEeCccccc
Confidence            45699999999999998876 99999998754

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=95.72  E-value=0.035  Score=58.12  Aligned_cols=32  Identities=19%  Similarity=0.319  Sum_probs=26.5

Q ss_pred             CCCeEecCCCCCceeeCCCCcEEEeecCCCCCC
Q 047629          449 QPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA  481 (615)
Q Consensus       449 ~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  481 (615)
                      .+.++|+|+.+.|||++.+ .+++.||..+...
T Consensus       226 ~~~L~HGDl~~~Nil~~~~-~~~lID~e~a~~G  257 (397)
T 2olc_A          226 AETLIHGDLHTGSIFASEH-ETKVIDPEFAFYG  257 (397)
T ss_dssp             CCEEECSCCSGGGEEECSS-CEEECCCTTCEEE
T ss_pred             CCceeeCCCCcCcEEEeCC-CeEEEeCcccccC
Confidence            3569999999999999876 4899999876543

>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}

Probab=95.49  E-value=0.057  Score=56.01  Aligned_cols=108  Identities=13%  Similarity=0.108  Sum_probs=72.5

Q ss_pred             eeeecccCCCCCCHHHHHHhhCCChHHHHhhcCCCCC---CCCCCCCccEEeeeeeccCCCc------------------
Q 047629           44 YVAYFAQSPEFLDLSNISDLFGVSRLSIARASNLVSE---DTPLVPKQLLLVPIICGCTGNQ------------------  102 (615)
Q Consensus        44 ~~~y~~~~~~~~~l~~i~~lf~~~~~~i~~~n~~~~~---~~~~~~~~~~~vP~~C~C~~~~------------------  102 (615)
                      ...|+.++.  .||..|+..+|++..+|..+|+....   .+.|.+||.+.||..   ..+.                  
T Consensus         7 ~~~~~Vk~G--DTL~~Ia~r~gvs~~~l~~~n~~~~~~~~~~~L~~Gq~L~i~~~---~~~~l~~l~~~~~~~~~~~~~~   81 (361)
T 2gu1_A            7 RIHYMVKVG--DTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELMMD---DMGQLSRLIYHMSIVEKAIYTR   81 (361)
T ss_dssp             CEEEECCTT--CCHHHHHHHTTCCHHHHHHHHHHGGGTCCGGGCCTTCEEEEEEC---TTSCEEEEEEEEETTEEEEEEE
T ss_pred             ceEEEECCC--CcHHHHHHHcCCCHHHHHHHHhhcccccchhcCCCCCEEEEEEC---CCCcceEEEEEcCccceEEEEe
Confidence            456888765  59999999999999999999986432   467999999999974   1111                  


Q ss_pred             -----ee----------eeeeEEeecCCchhhhhhhhcCCcchHHHHHHh-CCCCCC-CCcCCCcEEEEEe
Q 047629          103 -----YF----------ANITYQIKKGDSYYLVSITSFENLTNWHAVLEM-NPGINP-NLLQIGVKVTFPL  156 (615)
Q Consensus       103 -----~~----------~~~~y~v~~gdt~~~ia~~~~~~L~t~~~~~~~-n~~~~~-~~l~~G~~~~vpl  156 (615)
                           +.          ....|.++.|||++.+|...+-.......+... ...+|. ..+.+|+++.++.
T Consensus        82 ~~~g~f~~~~~~~~~~~~~~~~~v~igdSL~~iA~~~Gvs~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~~  152 (361)
T 2gu1_A           82 ENDGSFSYDFQEISGEWREILFSGEINGSFSVSARRVGLTSSQVANITQVMKDKIDFSRSLRAGDRFDILV  152 (361)
T ss_dssp             CTTSCEEEEEEECCCEEEEEEEEEESSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTTCCCC-CEEEEEE
T ss_pred             cCCCcceeeecccCceEEEEEEEEEECCcHHHHHHHcCCCHHHHHHHHHhhcccccccccCCCCCEEEEEE
Confidence                 10          113467778999999998765443332222211 112332 4699999988885

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=94.59  E-value=0.13  Score=51.21  Aligned_cols=58  Identities=24%  Similarity=0.344  Sum_probs=42.0

Q ss_pred             ceEEEEEE-CCeEEEEEEcc-------HHHHHHHHHHHhcCCC---CcccEEEEEEcCCCcEEEEEeecCCCCH
Q 047629          343 KSVYRATI-DGKVLAVKKIK-------EDVTEELRILQRINHA---NLVKLMGVSSDSQGNRFLVYEYAENGSL  405 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~---niv~l~g~~~~~~~~~~lV~E~~~~GsL  405 (615)
                      ..||+... +|+.+.+|+-.       ..+..|...|+.+.-.   -+.+++++  +   .-++||||++.+..
T Consensus        29 ~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~--~---~~~lv~e~l~~~~~   97 (288)
T 3f7w_A           29 WHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW--D---DRTLAMEWVDERPP   97 (288)
T ss_dssp             EEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE--E---TTEEEEECCCCCCC
T ss_pred             eEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec--c---CceEEEEeecccCC
Confidence            37999998 79999999854       2478899999988432   24456654  2   23789999987653

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=94.50  E-value=0.12  Score=51.71  Aligned_cols=32  Identities=16%  Similarity=0.147  Sum_probs=26.0

Q ss_pred             CCCeEecCCCCCceeeCCCCcEEEeecCCCCCC
Q 047629          449 QPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA  481 (615)
Q Consensus       449 ~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  481 (615)
                      .+.++|+|+.+.||+ ..++.+.+.||..+...
T Consensus       172 ~~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~g  203 (301)
T 3dxq_A          172 PLAACHCDPLCENFL-DTGERMWIVDWEYSGMN  203 (301)
T ss_dssp             CCEEECSCCCGGGEE-ECSSCEEECCCTTCEEE
T ss_pred             CceeeccCCCcCCEE-ECCCCEEEEecccccCC
Confidence            345899999999999 56667899999877543

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=94.50  E-value=0.069  Score=56.80  Aligned_cols=57  Identities=18%  Similarity=0.222  Sum_probs=39.3

Q ss_pred             eEEEEEEC---------CeEEEEEEcc-----HHHHHHHHHHHhcCCCCc-ccEEEEEEcCCCcEEEEEeecCCCCH
Q 047629          344 SVYRATID---------GKVLAVKKIK-----EDVTEELRILQRINHANL-VKLMGVSSDSQGNRFLVYEYAENGSL  405 (615)
Q Consensus       344 ~Vy~~~~~---------g~~vAvK~~~-----~~~~~Ei~~l~~l~H~ni-v~l~g~~~~~~~~~~lV~E~~~~GsL  405 (615)
                      .+|+....         ++.+.+|+..     ..+..|..++..+...++ .++++.+  .+   .+|+||+++-+|
T Consensus        88 ~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~~~~~li~E~~~l~~L~~~g~~P~l~~~~--~~---g~v~e~l~G~~l  159 (429)
T 1nw1_A           88 MLFLCRLSEVYPPIRNEPNKVLLRVYFNPETESHLVAESVIFTLLSERHLGPKLYGIF--SG---GRLEEYIPSRPL  159 (429)
T ss_dssp             EEEEEEECTTSCCSSSCCSEEEEEEECSCCCHHHHHHHHHHHHHHHHTTSSSCEEEEE--TT---EEEECCCCEEEC
T ss_pred             ceEEEEeCCCccccCCCCceEEEEEeCCCCcHHHHHHHHHHHHHHHhCCCCCcEEEEe--CC---CEEEEEeCCccc
Confidence            68887763         4678888762     457789999998854444 5677754  23   389999975343

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=94.41  E-value=0.051  Score=54.91  Aligned_cols=152  Identities=14%  Similarity=0.184  Sum_probs=83.0

Q ss_pred             eEEEEEECCeEEEEEEccH-----HHHHHHHHHHhcCCCCc--ccEEEEE-----EcCCCcEEEEEeecCCCCHHH----
Q 047629          344 SVYRATIDGKVLAVKKIKE-----DVTEELRILQRINHANL--VKLMGVS-----SDSQGNRFLVYEYAENGSLDK----  407 (615)
Q Consensus       344 ~Vy~~~~~g~~vAvK~~~~-----~~~~Ei~~l~~l~H~ni--v~l~g~~-----~~~~~~~~lV~E~~~~GsL~~----  407 (615)
                      .+|+...++..+++|....     .+..|..++..+...++  .+++...     ...++..+++++|+++..+..    
T Consensus        37 ~~~~v~~~~g~~vlk~~~~~~~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~  116 (322)
T 2ppq_A           37 SNFLLHTTKDPLILTLYEKRVEKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAALISFLEGMWLRKPEAK  116 (322)
T ss_dssp             EEEEEEESSCCEEEEEECC---CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEEEEEEECCCCBCCSSCCHH
T ss_pred             ceEEEEeCCccEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHH
Confidence            6888777555688887653     46778888888743222  2333210     001245789999998755321    


Q ss_pred             ----------hhccCCCC-CCCC-CcccccCHHHHHHH------------HHHHHHHHHHHHhC----CCCCeEecCCCC
Q 047629          408 ----------WLHPKSKS-SSSS-GSVIFLTWSQRLRV------------ALDVANGLQYMHEH----AQPSIVHRDIRT  459 (615)
Q Consensus       408 ----------~L~~~~~~-~~~~-~~~~~l~~~~~~~i------------~~~ia~gL~yLH~~----~~~~ivHrDlk~  459 (615)
                                .+|..... .... .......|...+.-            ...+...++++++.    ..+.++|+|+++
T Consensus       117 ~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~  196 (322)
T 2ppq_A          117 HCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQ  196 (322)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCG
T ss_pred             HHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCcccCCcccCCCCCCc
Confidence                      12211100 0000 00001234332111            11244556666642    123599999999


Q ss_pred             CceeeCCCCcEEEeecCCCCCCCCCCCCcccchhHHHHHHHHH
Q 047629          460 NNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELL  502 (615)
Q Consensus       460 ~NILld~~~~~kl~DFGla~~~~~~~~~k~DV~SfGvvl~Ell  502 (615)
                      .|||++++..+.+.||+.+....       -+|-+++++..+.
T Consensus       197 ~Nil~~~~~~~~lIDf~~a~~g~-------~~~Dla~~l~~~~  232 (322)
T 2ppq_A          197 DNVFFLGDELSGLIDFYFACNDL-------LAYDVSICLNAWC  232 (322)
T ss_dssp             GGEEEETTEEEEECCCTTCEEEE-------HHHHHHHHHHHHS
T ss_pred             cCEEEeCCceEEEecchhccCch-------hHHHHHHHHHHHH
Confidence            99999887656899999765421       2455666665543

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=94.30  E-value=0.093  Score=54.80  Aligned_cols=145  Identities=15%  Similarity=0.208  Sum_probs=86.6

Q ss_pred             eEEEEEEC---------CeEEEEEEcc------HHHHHHHHHHHhcCCCCc-ccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          344 SVYRATID---------GKVLAVKKIK------EDVTEELRILQRINHANL-VKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       344 ~Vy~~~~~---------g~~vAvK~~~------~~~~~Ei~~l~~l~H~ni-v~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      .+|+....         ++.+.+|+-.      .+..+|..+++.+.-.++ -++++++.  ++   +||||+++..|..
T Consensus        65 ~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~--~g---~v~e~i~G~~l~~  139 (379)
T 3feg_A           65 LLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFP--EG---RLEQYIPSRPLKT  139 (379)
T ss_dssp             CEEEEECCTTSCCCSSCCSEEEEEECC---CCHHHHHHHHHHHHHHHHTTSSCCEEEEET--TE---EEEECCSEEECCG
T ss_pred             cEEEEEeCCCccccCCCCCeEEEEECCCccchHHHHHHHHHHHHHHHhcCCCCeEEEEcC--Cc---cEEEEecCccCCh
Confidence            57776652         3678888752      346689999988853333 46776652  32   8999998755431


Q ss_pred             h-----------------hccCCCCCCCCCcccccCHHHHHHHHHHHHH-------------------HHHHHH----hC
Q 047629          408 W-----------------LHPKSKSSSSSGSVIFLTWSQRLRVALDVAN-------------------GLQYMH----EH  447 (615)
Q Consensus       408 ~-----------------L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~-------------------gL~yLH----~~  447 (615)
                      -                 ||.....   .+.....-|.++.++..++..                   .+..|.    ..
T Consensus       140 ~~l~~p~~~~~ia~~La~LH~~~~~---~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~L~~~  216 (379)
T 3feg_A          140 QELREPVLSAAIATKMAQFHGMEMP---FTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLEST  216 (379)
T ss_dssp             GGGGCHHHHHHHHHHHHHHHTCCCS---SCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHHHHHHTS
T ss_pred             hHhCCHHHHHHHHHHHHHHhCCCCC---CCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHhhc
Confidence            1                 2221110   010000124555555544321                   233333    22


Q ss_pred             C-CCCeEecCCCCCceeeCCC----CcEEEeecCCCCCCCCCCCCcccchhHHHHHHHHHc
Q 047629          448 A-QPSIVHRDIRTNNIQLDSR----FKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELLS  503 (615)
Q Consensus       448 ~-~~~ivHrDlk~~NILld~~----~~~kl~DFGla~~~~~~~~~k~DV~SfGvvl~Ellt  503 (615)
                      . ...++|+|+.+.|||++.+    ..+.+.||..+....       =.|-+|..+.|...
T Consensus       217 ~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~~~-------~~~Dla~~~~~~~~  270 (379)
T 3feg_A          217 PSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSYNY-------RGFDIGNHFCEWVY  270 (379)
T ss_dssp             CCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEEEE-------HHHHHHHHHHHTTE
T ss_pred             CCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCcCC-------hHHHHHHHHHHHHh
Confidence            2 3368999999999999876    789999998765432       24667888877663

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=94.19  E-value=0.19  Score=53.77  Aligned_cols=57  Identities=11%  Similarity=0.071  Sum_probs=40.7

Q ss_pred             eEEEEEECC--eEEEEEEccH------HHHHHHHHHHhcCCCCcc-cEEEEEEcCCCcEEEEEeecCCCCH
Q 047629          344 SVYRATIDG--KVLAVKKIKE------DVTEELRILQRINHANLV-KLMGVSSDSQGNRFLVYEYAENGSL  405 (615)
Q Consensus       344 ~Vy~~~~~g--~~vAvK~~~~------~~~~Ei~~l~~l~H~niv-~l~g~~~~~~~~~~lV~E~~~~GsL  405 (615)
                      .+|+....+  ..+.+|+...      +...|..++..+...++. ++++.+  .+   .+||||+++-+|
T Consensus       123 ~~y~v~~~~~~~~~vLRi~g~~~~~~idR~~E~~vl~~L~~~gl~P~ll~~~--~~---G~v~e~I~G~~l  188 (458)
T 2qg7_A          123 ILIKVKDMSKQAKYLIRLYGPKTDEIINREREKKISCILYNKNIAKKIYVFF--TN---GRIEEFMDGYAL  188 (458)
T ss_dssp             EEEEEEETTTTEEEEEEEECC-CCSCSCHHHHHHHHHHHTTSSSBCCEEEEE--TT---EEEEECCCSEEC
T ss_pred             EEEEEEECCCCceEEEEECCCChhhhcCHHHHHHHHHHHHhcCCCCCEEEEe--CC---eEEEEeeCCccC
Confidence            688888865  7888887642      235899999999766664 677765  23   259999986444

>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}

Probab=94.08  E-value=0.1  Score=54.13  Aligned_cols=95  Identities=12%  Similarity=0.143  Sum_probs=64.6

Q ss_pred             eeeEEeecCCchhhhhhhhcCCcchHHHHHHhCC-CCCCCCcCCCcEEEEEeeccCCCCCCC------------------
Q 047629          106 NITYQIKKGDSYYLVSITSFENLTNWHAVLEMNP-GINPNLLQIGVKVTFPLFCKCPSKTNM------------------  166 (615)
Q Consensus       106 ~~~y~v~~gdt~~~ia~~~~~~L~t~~~~~~~n~-~~~~~~l~~G~~~~vpl~c~C~~~~~~------------------  166 (615)
                      ...|+|++|||+..|+...+-.......+..... ..+.+.|.+|+++.+|..-   + ..+                  
T Consensus         7 ~~~~~Vk~GDTL~~Ia~r~gvs~~~l~~~n~~~~~~~~~~~L~~Gq~L~i~~~~---~-~~l~~l~~~~~~~~~~~~~~~   82 (361)
T 2gu1_A            7 RIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELMMDD---M-GQLSRLIYHMSIVEKAIYTRE   82 (361)
T ss_dssp             CEEEECCTTCCHHHHHHHTTCCHHHHHHHHHHGGGTCCGGGCCTTCEEEEEECT---T-SCEEEEEEEEETTEEEEEEEC
T ss_pred             ceEEEECCCCcHHHHHHHcCCCHHHHHHHHhhcccccchhcCCCCCEEEEEECC---C-CcceEEEEEcCccceEEEEec
Confidence            3569999999999999876544443333333221 2345789999999999632   1 111                  


Q ss_pred             -CCCe----------eEEEEEecCCCCchhHHHHHhcCChhhHhhhccc
Q 047629          167 -EDGI----------ENLITYVWQPGDDVSQVGAKLNASSAAIETENEY  204 (615)
Q Consensus       167 -s~~~----------~~l~ty~~~~gd~~~~ia~~F~~s~~~i~~~n~~  204 (615)
                       .+.+          ....+|.++.+|++..+|.++|++...+...|..
T Consensus        83 ~~g~f~~~~~~~~~~~~~~~~~v~igdSL~~iA~~~Gvs~~~i~~ln~i  131 (361)
T 2gu1_A           83 NDGSFSYDFQEISGEWREILFSGEINGSFSVSARRVGLTSSQVANITQV  131 (361)
T ss_dssp             TTSCEEEEEEECCCEEEEEEEEEESSSCHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CCCcceeeecccCceEEEEEEEEEECCcHHHHHHHcCCCHHHHHHHHHh
Confidence             0101          1123577788999999999999999999888876

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=93.67  E-value=0.38  Score=48.49  Aligned_cols=135  Identities=13%  Similarity=0.154  Sum_probs=72.1

Q ss_pred             eEEEEEE-CCeEEEEEEcc------HHHHHHHHHHHhcCCCC--cccEEEE----EEcCCCcEEEEEeecCCCCHH----
Q 047629          344 SVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHAN--LVKLMGV----SSDSQGNRFLVYEYAENGSLD----  406 (615)
Q Consensus       344 ~Vy~~~~-~g~~vAvK~~~------~~~~~Ei~~l~~l~H~n--iv~l~g~----~~~~~~~~~lV~E~~~~GsL~----  406 (615)
                      .||+... +|+.+++|...      ..+..|..++..+....  +.+++..    ....++..++++||+++..+.    
T Consensus        40 ~~y~v~~~~g~~~vlK~~~~~~~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i~G~~~~~~~~  119 (328)
T 1zyl_A           40 RVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQFEADNI  119 (328)
T ss_dssp             EEEEECCTTCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCEECCSSCH
T ss_pred             ceEEEEcCCCCEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEecCCCCCCCCCH
Confidence            6888766 56679999874      35677888888874222  3444432    000134568899999874432    


Q ss_pred             -Hh---------hccCCCCCCCCCcccccCHHHH----HHH---------------HHHHHHHHHHHHhC----CCCCeE
Q 047629          407 -KW---------LHPKSKSSSSSGSVIFLTWSQR----LRV---------------ALDVANGLQYMHEH----AQPSIV  453 (615)
Q Consensus       407 -~~---------L~~~~~~~~~~~~~~~l~~~~~----~~i---------------~~~ia~gL~yLH~~----~~~~iv  453 (615)
                       .+         +|...... .......+++...    ..+               ...+...++.+...    ..+.++
T Consensus       120 ~~~~~~g~~La~lH~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~  198 (328)
T 1zyl_A          120 DQMEAVGRYLGRMHQTGRKQ-LFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHWREDFTVLRL  198 (328)
T ss_dssp             HHHHHHHHHHHHHHHHHTSS-CCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHCCSCSCCEEC
T ss_pred             HHHHHHHHHHHHHHHhhccC-CCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCeeee
Confidence             10         11110000 0000001222211    000               11111223333321    234589


Q ss_pred             ecCCCCCceeeCCCCcEEEeecCCCCCC
Q 047629          454 HRDIRTNNIQLDSRFKAKIANFSLAAPA  481 (615)
Q Consensus       454 HrDlk~~NILld~~~~~kl~DFGla~~~  481 (615)
                      |+|+++.|||++ + .+.+.||+.+...
T Consensus       199 HgD~~~~Nil~~-~-~~~lIDfe~a~~g  224 (328)
T 1zyl_A          199 HGDCHAGNILWR-D-GPMFVDLDDARNG  224 (328)
T ss_dssp             CSSCSGGGEEES-S-SEEECCCTTCCEE
T ss_pred             eCCCCcccEeEc-C-CCEEEECCCCCcC
Confidence            999999999999 4 8999999876543

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=93.21  E-value=0.048  Score=37.69  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=9.7

Q ss_pred             EeehhHHHHHHHHHHHHHHHHH
Q 047629          243 LIIPISAGGALLILLVAALVIY  264 (615)
Q Consensus       243 ~ii~i~~~~~~l~~~~~~~~~~  264 (615)
                      .|++.+++++++++++++.+++
T Consensus        11 aIA~gVVgGv~~v~ii~~~~~~   32 (44)
T 2l2t_A           11 LIAAGVIGGLFILVIVGLTFAV   32 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEeehHHHHHHHHHHHHHHH
Confidence            3445455544444444333333

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=93.19  E-value=0.058  Score=37.36  Aligned_cols=19  Identities=37%  Similarity=0.319  Sum_probs=8.4

Q ss_pred             EeehhHHHHHHHHHHHHHH
Q 047629          243 LIIPISAGGALLILLVAAL  261 (615)
Q Consensus       243 ~ii~i~~~~~~l~~~~~~~  261 (615)
                      .|++.++++++++++++++
T Consensus        12 ~IA~gVVgGv~~~~ii~~~   30 (44)
T 2ks1_B           12 SIATGMVGALLLLLVVALG   30 (44)
T ss_dssp             SSTHHHHHHHHHHHHHHHH
T ss_pred             eEEeehhHHHHHHHHHHHH
Confidence            3444444444444443333

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=93.10  E-value=0.21  Score=51.62  Aligned_cols=45  Identities=16%  Similarity=0.211  Sum_probs=33.0

Q ss_pred             CCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCCCCCcccchhHHHHHHHHH
Q 047629          450 PSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLELL  502 (615)
Q Consensus       450 ~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~k~DV~SfGvvl~Ell  502 (615)
                      +.++|+|+++.|||++++. +.+.||..+....       =.|-+|..+.+..
T Consensus       212 ~~l~HgDl~~~Nil~~~~~-~~lID~e~a~~g~-------~~~Dla~~~~~~~  256 (369)
T 3c5i_A          212 IVFCHNDLQENNIINTNKC-LRLIDFEYSGFNF-------LATDIANFFIETS  256 (369)
T ss_dssp             EEEECSCCCGGGEEECC-C-EEECCCTTCEEEE-------HHHHHHHHHHGGG
T ss_pred             eEEEeCCCCcccEEecCCc-EEEEEecCCCCCc-------hHHHHHHHHHHHh
Confidence            3589999999999998654 8999998765432       2355677777654

>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*

Probab=92.29  E-value=0.12  Score=47.18  Aligned_cols=46  Identities=24%  Similarity=0.403  Sum_probs=37.0

Q ss_pred             EEEEecCCCCchhHHHHHhcCChhhHhhhccccCccccCccceecc
Q 047629          173 LITYVWQPGDDVSQVGAKLNASSAAIETENEYRNFSEAVSLPVLIP  218 (615)
Q Consensus       173 l~ty~~~~gd~~~~ia~~F~~s~~~i~~~n~~~~~~~~~~~~~l~p  218 (615)
                      +++|.|+.||++..||++|+.....+..+|...++-...+..+.+|
T Consensus         2 ~~~y~V~~GdtL~~IA~~f~~g~~~l~~aNp~vd~~l~~g~~i~ip   47 (165)
T 4a1k_A            2 MLTYQVKQGDTLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIP   47 (165)
T ss_dssp             CEEEECCTTCCHHHHHHHTTCCHHHHHHHCGGGGGCCCTTCEEEET
T ss_pred             CEEEEECCCCCHHHHHHHhCCCHHHHHHhCccCCCccCCCccccCc
Confidence            3689999999999999999999999999997643333346666666

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=90.89  E-value=0.85  Score=43.43  Aligned_cols=89  Identities=17%  Similarity=0.178  Sum_probs=60.6

Q ss_pred             CCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCC--
Q 047629          403 GSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAP--  480 (615)
Q Consensus       403 GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~--  480 (615)
                      -||.+.|.....         ++++.+.+.++.|.+.+|.-+-....+.  .+=+-|..|++..+|.+...+ +.+..  
T Consensus        33 vSL~eIL~~~~~---------PlsEEqaWALc~Qc~~~L~~~~~~~~~~--~~i~~~~~i~l~~dG~V~f~~-~~s~~~~  100 (229)
T 2yle_A           33 LSLEEILRLYNQ---------PINEEQAWAVCYQCCGSLRAAARRRQPR--HRVRSAAQIRVWRDGAVTLAP-AADDAGE  100 (229)
T ss_dssp             EEHHHHHHHHTS---------CCCHHHHHHHHHHHHHHHHHHHHTTCCC--CCCCSGGGEEEETTSCEEECC-C------
T ss_pred             ccHHHHHHHcCC---------CcCHHHHHHHHHHHHHHHHhhhhcccCC--ceecCCcceEEecCCceeccc-ccccccc
Confidence            378898876554         5999999999999999987663222111  222346889999999988774 22210  


Q ss_pred             --C------CCCCCCcccchhHHHHHHHHHc
Q 047629          481 --A------TNDVMPKFDVFAFGVVLLELLS  503 (615)
Q Consensus       481 --~------~~~~~~k~DV~SfGvvl~Ellt  503 (615)
                        .      ....+.+.=|||+|+++|.-+-
T Consensus       101 ~~~~~pe~~~~~~te~~~IysLG~tLY~ALD  131 (229)
T 2yle_A          101 PPPVAGKLGYSQCMETEVIESLGIIIYKALD  131 (229)
T ss_dssp             ------CCSSSSSCHHHHHHHHHHHHHHHHT
T ss_pred             cCCCChhhccccchHHHHHHHHHHHHHHHhh
Confidence              0      1122467789999999998876

>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*

Probab=90.86  E-value=0.17  Score=46.14  Aligned_cols=47  Identities=19%  Similarity=0.292  Sum_probs=38.9

Q ss_pred             eeeecccCCCCCCHHHHHHhhCCChHHHHhhcCCCCCCCCCCCCccEEeee
Q 047629           44 YVAYFAQSPEFLDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPI   94 (615)
Q Consensus        44 ~~~y~~~~~~~~~l~~i~~lf~~~~~~i~~~n~~~~~~~~~~~~~~~~vP~   94 (615)
                      +++|+.+..  .||..||..|+++..+|..+|+..  +..+++|+.+.||.
T Consensus         2 ~~~y~V~~G--dtL~~IA~~f~~g~~~l~~aNp~v--d~~l~~g~~i~ip~   48 (165)
T 4a1k_A            2 MLTYQVKQG--DTLNSIAADFRISTAALLQANPSL--QAGLTAGQSIVIPG   48 (165)
T ss_dssp             CEEEECCTT--CCHHHHHHHTTCCHHHHHHHCGGG--GGCCCTTCEEEETT
T ss_pred             CEEEEECCC--CCHHHHHHHhCCCHHHHHHhCccC--CCccCCCccccCcc
Confidence            467888754  599999999999999999999854  23478999999984

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=90.46  E-value=0.18  Score=34.77  Aligned_cols=8  Identities=38%  Similarity=0.468  Sum_probs=4.3

Q ss_pred             EeehhHHH
Q 047629          243 LIIPISAG  250 (615)
Q Consensus       243 ~ii~i~~~  250 (615)
                      .++++++|
T Consensus        13 ~Ia~~vVG   20 (44)
T 2jwa_A           13 SIISAVVG   20 (44)
T ss_dssp             HHHHHHHH
T ss_pred             chHHHHHH
Confidence            35555555

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=86.49  E-value=0.35  Score=32.35  Aligned_cols=24  Identities=17%  Similarity=0.205  Sum_probs=13.5

Q ss_pred             eeEeehhHHHHHHHHHHHHHHHHH
Q 047629          241 LTLIIPISAGGALLILLVAALVIY  264 (615)
Q Consensus       241 ~~~ii~i~~~~~~l~~~~~~~~~~  264 (615)
                      ...|++++++.++.+++++++.+|
T Consensus        10 ~GaIAGiVvG~v~gv~li~~l~~~   33 (38)
T 2k1k_A           10 GGEIVAVIFGLLLGAALLLGILVF   33 (38)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceeeeehHHHHHHHHHHHHHHH
Confidence            455677777766555544444433

>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}

Probab=83.48  E-value=2.6  Score=39.92  Aligned_cols=116  Identities=7%  Similarity=0.052  Sum_probs=80.5

Q ss_pred             CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEe
Q 047629          375 NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH  454 (615)
Q Consensus       375 ~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivH  454 (615)
                      .||+++..- +-.+ ++...+.|+.-+  +...|-.-           ..++...+++++.+|+.-..+++.     -+|
T Consensus        43 ~~~~Fl~~~-I~e~-eD~v~~~y~~~~--~~~~f~~i-----------k~~~~~eKlr~l~ni~~l~~~~~~-----r~t  102 (215)
T 4ann_A           43 HSPYFIDAE-LTEL-RDSFQIHYDIND--NHTPFDNI-----------KSFTKNEKLRYLLNIKNLEEVNRT-----RYT  102 (215)
T ss_dssp             CCTTBCCEE-EEEC-SSEEEEEECCCT--TSEEGGGG-----------GGSCHHHHHHHHHHGGGGGGGGGS-----SEE
T ss_pred             cCCcccceE-EEEc-ccEEEEEEEcCc--ccCCHHHH-----------HhcCHHHHHHHHHHHHHHHHHhcC-----ceE
Confidence            788888663 3333 335555555443  33333221           127888999999999887755553     378


Q ss_pred             cCCCCCceeeCCCCcEEEeecCCCCCCCCCCCCcccch-hHHHHHHHHHcCCCCCCC
Q 047629          455 RDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVF-AFGVVLLELLSGKKATRT  510 (615)
Q Consensus       455 rDlk~~NILld~~~~~kl~DFGla~~~~~~~~~k~DV~-SfGvvl~ElltG~~p~~~  510 (615)
                      --|.|+|+++|.++.+++.-.|+-......-..+-|-| .+=+++..+++++..|+.
T Consensus       103 f~L~P~NL~f~~~~~p~i~~RGik~~l~P~~~~ee~fL~qyKAliiall~~K~~Fe~  159 (215)
T 4ann_A          103 FVLAPDELFFTRDGLPIAKTRGLQNVVDPLPVSEAEFLTRYKALVICAFNEKQSFDA  159 (215)
T ss_dssp             CCCSGGGEEECTTSCEEESCCEETTTBSCCCCCHHHHHHHHHHHHHHHHCTTCCHHH
T ss_pred             EEEecceEEEcCCCCEEEEEccCccCCCCCCCCHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            88999999999999999999998655443333444555 688889999999888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	615
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	8e-41
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	4e-39
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	4e-39
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	4e-37
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	1e-34
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	1e-34
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	3e-33
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	3e-33
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	8e-33
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-32
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	2e-32
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	2e-32
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	4e-32
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	5e-32
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	6e-32
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	6e-32
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	1e-31
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-31
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	2e-31
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	1e-30
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	3e-30
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	3e-30
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	8e-30
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-29
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	1e-29
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-29
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	5e-29
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	6e-29
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-28
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	3e-28
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	4e-28
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	9e-28
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	5e-27
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	6e-27
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	1e-25
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-25
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	3e-25
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	1e-24
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	2e-24
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	2e-23
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	2e-23
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	3e-23
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	4e-22
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	6e-22
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	7e-22
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	1e-21
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	3e-21
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	5e-21
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	8e-21
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-20
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	5e-20
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	1e-19
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	2e-19
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	2e-19
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	3e-19
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	6e-19
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	9e-18
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	1e-17
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	3e-17
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	6e-17
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	1e-16
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	2e-13
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	2e-09

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  147 bits (372), Expect = 8e-41
 Identities = 64/297 (21%), Positives = 112/297 (37%), Gaps = 76/297 (25%)

Query: 337 EHYSIGK--------SVYRATIDGKVLAVKKIK---------EDVTEELRILQRINHANL 379
              ++G+        +VY+    G V AVK +          +    E+ +L++  H N+
Sbjct: 8   GQITVGQRIGSGSFGTVYKGKWHGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI 66

Query: 380 VKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVAN 439
           +  MG S+       +V ++ E  SL   LH                  + + +A   A 
Sbjct: 67  LLFMGYSTA--PQLAIVTQWCEGSSLYHHLHIIETK---------FEMIKLIDIARQTAQ 115

Query: 440 GLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA--------------------- 478
           G+ Y+H     SI+HRD+++NNI L      KI +F LA                     
Sbjct: 116 GMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILW 172

Query: 479 -AP------ATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE 531
            AP        N    + DV+AFG+VL EL++G+       N                ++
Sbjct: 173 MAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINN---------------RDQ 217

Query: 532 KREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS 588
                 R ++ P+L      +   ++  L   C   K   RP   +++ ++ +L +S
Sbjct: 218 IIFMVGRGYLSPDLSKV-RSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARS 273

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (359), Expect = 4e-39
 Identities = 61/271 (22%), Positives = 106/271 (39%), Gaps = 60/271 (22%)

Query: 341 IGK----SVYRATIDGKVLAVKKIKEDVTE-----ELRILQRINHANLVKLMGVSSDSQG 391
           IGK     V      G  +AVK IK D T      E  ++ ++ H+NLV+L+GV  + +G
Sbjct: 15  IGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKG 74

Query: 392 NRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPS 451
             ++V EY   GSL  +L  + +S         L     L+ +LDV   ++Y+  +   +
Sbjct: 75  GLYIVTEYMAKGSLVDYLRSRGRS--------VLGGDCLLKFSLDVCEAMEYLEGN---N 123

Query: 452 IVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM--------------------PKFDV 491
            VHRD+   N+ +     AK+++F L   A++                        K DV
Sbjct: 124 FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDV 183

Query: 492 FAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPI 551
           ++FG++L E+ S  +        K  V                 R+      +     P 
Sbjct: 184 WSFGILLWEIYSFGRVPYPRIPLKDVV----------------PRVEKGYKMDAPDGCPP 227

Query: 552 DGALSLATLARACTMDKSLSRPNMAEVVFNL 582
                +  + + C    +  RP+  ++   L
Sbjct: 228 A----VYEVMKNCWHLDAAMRPSFLQLREQL 254

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (362), Expect = 4e-39
 Identities = 63/300 (21%), Positives = 112/300 (37%), Gaps = 64/300 (21%)

Query: 341 IGK----SVYRATIDGKVLAVKKIKEDVTE------ELRILQRINHANLVKLMGVSSDSQ 390
           IGK     V+R    G+ +AVK              E+     + H N++  +   +   
Sbjct: 11  IGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDN 70

Query: 391 GNR---FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH 447
           G     +LV +Y E+GSL  +L+  +           +T    +++AL  A+GL ++H  
Sbjct: 71  GTWTQLWLVSDYHEHGSLFDYLNRYT-----------VTVEGMIKLALSTASGLAHLHME 119

Query: 448 A-----QPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------------------ 478
                 +P+I HRD+++ NI +       IA+  LA                        
Sbjct: 120 IVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYM 179

Query: 479 AP---------ATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV 529
           AP            +   + D++A G+V  E+          E+ +    +  +     V
Sbjct: 180 APEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQL-PYYDLVPSDPSV 238

Query: 530 EEKREERLRNWMDPNLESFYPIDGAL-SLATLARACTMDKSLSRPNMAEVVFNLSVLTQS 588
           EE R+      + PN+ + +    AL  +A + R C      +R     +   LS L+Q 
Sbjct: 239 EEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (345), Expect = 4e-37
 Identities = 60/293 (20%), Positives = 104/293 (35%), Gaps = 72/293 (24%)

Query: 337 EHYSIGK--------SVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVK 381
           E   + +         V+         +AVK +K      +    E  +++++ H  LV+
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVR 72

Query: 382 LMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGL 441
           L  V +      +++ EY ENGSL  +L   S           LT ++ L +A  +A G+
Sbjct: 73  LYAVVTQ--EPIYIITEYMENGSLVDFLKTPSGIK--------LTINKLLDMAAQIAEGM 122

Query: 442 QYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------------------AP 480
            ++ E    + +HRD+R  NI +      KIA+F LA                     AP
Sbjct: 123 AFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAP 179

Query: 481 A---TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERL 537
                     K DV++FG++L E+++  +           +                + L
Sbjct: 180 EAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVI----------------QNL 223

Query: 538 RNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE 590
                       P +    L  L R C  ++   RP    +   L     +TE
Sbjct: 224 ERGYRMVRPDNCPEE----LYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATE 272

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (330), Expect = 1e-34
 Identities = 62/311 (19%), Positives = 102/311 (32%), Gaps = 81/311 (26%)

Query: 337 EHYSIGK--------SVYRATI-------DGKVLAVKKIK--------EDVTEELRILQR 373
              S GK         V  AT            +AVK +K        E +  EL++L  
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 82

Query: 374 I-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSV--------IF 424
           + NH N+V L+G  +   G   ++ EY   G L  +L  K  S   S +         + 
Sbjct: 83  LGNHMNIVNLLGACTI-GGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELA 141

Query: 425 LTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND 484
           L     L  +  VA G+ ++      + +HRD+   NI L      KI +F LA    ND
Sbjct: 142 LDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILLTHGRITKICDFGLARDIKND 198

Query: 485 VM-------------------------PKFDVFAFGVVLLELLSGKKATRTTENGKTAVL 519
                                       + DV+++G+ L EL S   +            
Sbjct: 199 SNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP------ 252

Query: 520 WKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVV 579
                         + +    +        P      +  + + C     L RP   ++V
Sbjct: 253 -------------VDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIV 299

Query: 580 FNL-SVLTQST 589
             +   +++ST
Sbjct: 300 QLIEKQISEST 310

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (330), Expect = 1e-34
 Identities = 41/200 (20%), Positives = 83/200 (41%), Gaps = 48/200 (24%)

Query: 341 IGK----SVYRAT--IDGKVLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVS 386
           +G      V++ +    G V+A K I  ++          EL++L   N   +V   G  
Sbjct: 14  LGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAF 73

Query: 387 SDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE 446
               G   +  E+ + GSLD+ L    +          +      +V++ V  GL Y+ E
Sbjct: 74  YS-DGEISICMEHMDGGSLDQVLKKAGR----------IPEQILGKVSIAVIKGLTYLRE 122

Query: 447 HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM-------------------- 486
             +  I+HRD++ +NI ++SR + K+ +F ++    + +                     
Sbjct: 123 --KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHY 180

Query: 487 -PKFDVFAFGVVLLELLSGK 505
             + D+++ G+ L+E+  G+
Sbjct: 181 SVQSDIWSMGLSLVEMAVGR 200

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (317), Expect = 3e-33
 Identities = 51/288 (17%), Positives = 96/288 (33%), Gaps = 72/288 (25%)

Query: 337 EHYSIGK--------SVYRAT--IDGKVLAVKKIK---------EDVTEELRILQRINHA 377
           E Y +             +     DGK+L  K++          + +  E+ +L+ + H 
Sbjct: 4   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 63

Query: 378 NLVKLMGVSSDSQGNR-FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALD 436
           N+V+      D      ++V EY E G L   +   +K         +L     LRV   
Sbjct: 64  NIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQ------YLDEEFVLRVMTQ 117

Query: 437 VANGLQYMHEH--AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM-------- 486
           +   L+  H       +++HRD++  N+ LD +   K+ +F LA    +D          
Sbjct: 118 LTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGT 177

Query: 487 ---------------PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE 531
                           K D+++ G +L EL +           + A              
Sbjct: 178 PYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELA-------------- 223

Query: 532 KREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVV 579
               ++R      +   Y  +    L  +       K   RP++ E++
Sbjct: 224 ---GKIREGKFRRIPYRYSDE----LNEIITRMLNLKDYHRPSVEEIL 264

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (316), Expect = 3e-33
 Identities = 53/283 (18%), Positives = 104/283 (36%), Gaps = 68/283 (24%)

Query: 341 IGK----SVYRAT-IDGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDS 389
           IG      V+    ++   +A+K I+      ED  EE  ++ +++H  LV+L GV  + 
Sbjct: 13  IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE- 71

Query: 390 QGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQ 449
           Q    LV+E+ E+G L  +L  +    +             L + LDV  G+ Y+ E   
Sbjct: 72  QAPICLVFEFMEHGCLSDYLRTQRGLFA---------AETLLGMCLDVCEGMAYLEEA-- 120

Query: 450 PSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM----------------------- 486
             ++HRD+   N  +      K+++F +     +D                         
Sbjct: 121 -CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRY 179

Query: 487 -PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL 545
             K DV++FGV++ E+ S  K      +                       +   +    
Sbjct: 180 SSKSDVWSFGVLMWEVFSEGKIPYENRS--------------------NSEVVEDISTGF 219

Query: 546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS 588
             + P   +  +  +   C  ++   RP  + ++  L+ + +S
Sbjct: 220 RLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEIAES 262

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  126 bits (316), Expect = 8e-33
 Identities = 59/325 (18%), Positives = 116/325 (35%), Gaps = 87/325 (26%)

Query: 323 YEIEVIMESTMNLSE-----HYSIGK--------SVYRATI-----DGKVLAVKKIKEDV 364
           +  E   E+    ++        I +         V    +         +A+K +K   
Sbjct: 7   FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 66

Query: 365 TE--------ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSS 416
           TE        E  I+ + +H N++ L GV + S     ++ E+ ENGSLD +L       
Sbjct: 67  TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKS-TPVMIITEFMENGSLDSFLRQNDGQF 125

Query: 417 SSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFS 476
                    T  Q + +   +A G++Y+ +    + VHRD+   NI ++S    K+++F 
Sbjct: 126 ---------TVIQLVGMLRGIAAGMKYLADM---NYVHRDLAARNILVNSNLVCKVSDFG 173

Query: 477 LA-------------------------APA---TNDVMPKFDVFAFGVVLLELLSGKKAT 508
           L+                         AP            DV+++G+V+ E++S  +  
Sbjct: 174 LSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGE-- 231

Query: 509 RTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDK 568
                                 +   + + N ++ +     P+D   +L  L   C    
Sbjct: 232 ------------------RPYWDMTNQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKD 273

Query: 569 SLSRPNMAEVVFNLSVLTQSTETLE 593
              RP   ++V  L  + ++  +L+
Sbjct: 274 RNHRPKFGQIVNTLDKMIRNPNSLK 298

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  124 bits (313), Expect = 2e-32
 Identities = 65/297 (21%), Positives = 108/297 (36%), Gaps = 82/297 (27%)

Query: 341 IGK----SVYRATI-------DGKVLAVKKIKEDVTE--------ELRILQRINHANLVK 381
           IG+     V++A            ++AVK +KE+ +         E  ++   ++ N+VK
Sbjct: 21  IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVK 80

Query: 382 LMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSS--------------SSGSVIFLTW 427
           L+GV +       L++EY   G L+++L   S  +               SS     L+ 
Sbjct: 81  LLGVCAV-GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSC 139

Query: 428 SQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM- 486
           +++L +A  VA G+ Y+ E      VHRD+ T N  +      KIA+F L+    +    
Sbjct: 140 AEQLCIARQVAAGMAYLSER---KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYY 196

Query: 487 ------------------------PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKE 522
                                    + DV+A+GVVL E+ S                   
Sbjct: 197 KADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMA--------- 247

Query: 523 IREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVV 579
                      EE +    D N+ +  P +  L L  L R C       RP+   + 
Sbjct: 248 ----------HEEVIYYVRDGNILAC-PENCPLELYNLMRLCWSKLPADRPSFCSIH 293

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 2e-32
 Identities = 47/218 (21%), Positives = 83/218 (38%), Gaps = 58/218 (26%)

Query: 333 MNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK-------EDVTEELRILQRIN 375
           +N  + + I           VY+A       + A K I        ED   E+ IL   +
Sbjct: 8   LNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCD 67

Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVAL 435
           H N+VKL+      + N +++ E+   G++D  +    +          LT SQ   V  
Sbjct: 68  HPNIVKLLDAFYY-ENNLWILIEFCAGGAVDAVMLELERP---------LTESQIQVVCK 117

Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM--------- 486
              + L Y+H++    I+HRD++  NI        K+A+F ++A  T  +          
Sbjct: 118 QTLDALNYLHDN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTP 174

Query: 487 -------------------PKFDVFAFGVVLLELLSGK 505
                               K DV++ G+ L+E+   +
Sbjct: 175 YWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIE 212

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (311), Expect = 2e-32
 Identities = 60/285 (21%), Positives = 105/285 (36%), Gaps = 68/285 (23%)

Query: 341 IGK----SVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDS 389
           +G+     V+  T      +A+K +K      E   +E ++++++ H  LV+L  V   S
Sbjct: 25  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAV--VS 82

Query: 390 QGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQ 449
           +   ++V EY   GSL  +L  ++          +L   Q + +A  +A+G+ Y+     
Sbjct: 83  EEPIYIVTEYMSKGSLLDFLKGETGK--------YLRLPQLVDMAAQIASGMAYVERM-- 132

Query: 450 PSIVHRDIRTNNIQLDSRFKAKIANFSLA---------------------APA---TNDV 485
            + VHRD+R  NI +      K+A+F LA                     AP        
Sbjct: 133 -NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRF 191

Query: 486 MPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL 545
             K DV++FG++L EL +  +                              + + ++   
Sbjct: 192 TIKSDVWSFGILLTELTTKGRVPYPGMV--------------------NREVLDQVERGY 231

Query: 546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE 590
               P +   SL  L   C   +   RP    +   L     STE
Sbjct: 232 RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE 276

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 4e-32
 Identities = 60/286 (20%), Positives = 100/286 (34%), Gaps = 47/286 (16%)

Query: 337 EHYSIGK--------SVYRA-------TIDGKVLAVKKIKEDVTE--------ELRILQR 373
           E+   GK         V  A       T     +AVK +KE            EL+++ +
Sbjct: 37  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQ 96

Query: 374 I-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSS-------------SS 419
           + +H N+V L+G  + S G  +L++EY   G L  +L  K +  S               
Sbjct: 97  LGSHENIVNLLGACTLS-GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEE 155

Query: 420 GSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA 479
             +  LT+   L  A  VA G++++      S VHRD+   N+ +      KI +F LA 
Sbjct: 156 EDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRDLAARNVLVTHGKVVKICDFGLAR 212

Query: 480 PATNDVMPKFDVFAFGVVLL---ELLSGKKATRTTENGKTAVLWKEI---REVLKVEEKR 533
              +D        A   V     E L     T  ++     +L  EI             
Sbjct: 213 DIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV 272

Query: 534 EERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVV 579
           +      +    +   P      +  + ++C    S  RP+   + 
Sbjct: 273 DANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLT 318

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (307), Expect = 5e-32
 Identities = 54/265 (20%), Positives = 101/265 (38%), Gaps = 32/265 (12%)

Query: 337 EHYSIGK--------SVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVK 381
           +  +  K         V          +A+K IK      ++  EE +++  ++H  LV+
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQ 63

Query: 382 LMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGL 441
           L GV +  Q   F++ EY  NG L  +L                   Q L +  DV   +
Sbjct: 64  LYGVCTK-QRPIFIITEYMANGCLLNYLREMRHR---------FQTQQLLEMCKDVCEAM 113

Query: 442 QYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLL-- 499
           +Y+        +HRD+   N  ++ +   K+++F L+    +D         F V     
Sbjct: 114 EYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPP 170

Query: 500 ELLSGKKATRTTENGKTAVLWKEIREVLKV--EEKREERLRNWMDPNLESFYPIDGALSL 557
           E+L   K +  ++     VL  EI  + K+  E          +   L  + P   +  +
Sbjct: 171 EVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKV 230

Query: 558 ATLARACTMDKSLSRPNMAEVVFNL 582
            T+  +C  +K+  RP    ++ N+
Sbjct: 231 YTIMYSCWHEKADERPTFKILLSNI 255

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  123 bits (310), Expect = 6e-32
 Identities = 51/288 (17%), Positives = 91/288 (31%), Gaps = 76/288 (26%)

Query: 334 NLSEHYS----IGK----SVYRAT--IDGKVLAVKKIK----------EDVTEELRILQR 373
           +  + +S    IG     +VY A    + +V+A+KK+           +D+ +E+R LQ+
Sbjct: 12  DPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQK 71

Query: 374 INHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRV 433
           + H N ++  G     +   +LV EY    + D     K            L   +   V
Sbjct: 72  LRHPNTIQYRGCYLR-EHTAWLVMEYCLGSASDLLEVHKKP----------LQEVEIAAV 120

Query: 434 ALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM------- 486
                 GL Y+H H   +++HRD++  NI L      K+ +F  A+              
Sbjct: 121 THGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGTPYW 177

Query: 487 ---------------PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE 531
                           K DV++ G+  +EL   K                          
Sbjct: 178 MAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLF--------------------NM 217

Query: 532 KREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVV 579
                L +       +      +        +C       RP    ++
Sbjct: 218 NAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLL 265

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (308), Expect = 6e-32
 Identities = 59/296 (19%), Positives = 104/296 (35%), Gaps = 78/296 (26%)

Query: 343 KSVYRATIDGKVLAVKKIKEDVTE--------ELRILQRINHANLVKLMGVSSDSQGNRF 394
           + VYR       +A+K +K+   +        E +I+ ++++  +V+L+GV         
Sbjct: 27  QGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAE--ALM 84

Query: 395 LVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVH 454
           LV E A  G L K+L  K +          +  S    +   V+ G++Y+ E    + VH
Sbjct: 85  LVMEMAGGGPLHKFLVGKREE---------IPVSNVAELLHQVSMGMKYLEEK---NFVH 132

Query: 455 RDIRTNNIQLDSRFKAKIANFSLA-----------------------APA---TNDVMPK 488
           RD+   N+ L +R  AKI++F L+                       AP          +
Sbjct: 133 RDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSR 192

Query: 489 FDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESF 548
            DV+++GV + E LS  +       G           +  +E+ +         P     
Sbjct: 193 SDVWSYGVTMWEALSYGQKPYKKMKGPEV--------MAFIEQGKRMECPPECPP----- 239

Query: 549 YPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTETLERSWTSGLEAEE 604
                   L  L   C + K   RP+   V           + +   + S     E
Sbjct: 240 -------ELYALMSDCWIYKWEDRPDFLTVE----------QRMRACYYSLASKVE 278

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  122 bits (306), Expect = 1e-31
 Identities = 55/286 (19%), Positives = 106/286 (37%), Gaps = 68/286 (23%)

Query: 341 IGK----SVYRATI--DGKVLAVKKIKEDVTE------ELRILQRINHANLVKLMGVSSD 388
           +G      VY          +AVK +KED  E      E  +++ I H NLV+L+GV + 
Sbjct: 25  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 84

Query: 389 SQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA 448
            +   +++ E+   G+L  +L   ++          ++    L +A  +++ ++Y+ +  
Sbjct: 85  -EPPFYIITEFMTYGNLLDYLRECNRQE--------VSAVVLLYMATQISSAMEYLEKK- 134

Query: 449 QPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM---------------------- 486
             + +HRD+   N  +      K+A+F L+   T D                        
Sbjct: 135 --NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNK 192

Query: 487 --PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPN 544
              K DV+AFGV+L E+ +   +     +                      ++   ++ +
Sbjct: 193 FSIKSDVWAFGVLLWEIATYGMSPYPGID--------------------LSQVYELLEKD 232

Query: 545 LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE 590
                P      +  L RAC       RP+ AE+      + Q + 
Sbjct: 233 YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESS 278

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 1e-31
 Identities = 58/284 (20%), Positives = 100/284 (35%), Gaps = 77/284 (27%)

Query: 337 EHYSIGK--------SVYRAT--IDGKVLAVKKIK----------EDVTEELRILQRINH 376
           E + IG+        +VY A       +LA+K +             +  E+ I   + H
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 65

Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALD 436
            N+++L G   D     +L+ EYA  G++ + L   SK              +      +
Sbjct: 66  PNILRLYGYFHD-ATRVYLILEYAPLGTVYRELQKLSK----------FDEQRTATYITE 114

Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM---------- 486
           +AN L Y H      ++HRDI+  N+ L S  + KIA+F  +  A +             
Sbjct: 115 LANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYL 171

Query: 487 -----------PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREE 535
                       K D+++ GV+  E L GK                  +E  K   + E 
Sbjct: 172 PPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEA----------NTYQETYKRISRVEF 221

Query: 536 RLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVV 579
              +++                  ++R    + S  RP + EV+
Sbjct: 222 TFPDFVTEGARDL-----------ISRLLKHNPS-QRPMLREVL 253

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 2e-31
 Identities = 47/278 (16%), Positives = 95/278 (34%), Gaps = 69/278 (24%)

Query: 341 IGK----SVYRA--TIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGV 385
           IG+    +VY+   T     +A  +++         +   EE  +L+ + H N+V+    
Sbjct: 17  IGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDS 76

Query: 386 ---SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQ 442
              +   +    LV E   +G+L  +L               +           +  GLQ
Sbjct: 77  WESTVKGKKCIVLVTELMTSGTLKTYLKRFKV----------MKIKVLRSWCRQILKGLQ 126

Query: 443 YMHEHAQPSIVHRDIRTNNIQLDSR-FKAKIANFSLA------------------AP--A 481
           ++H    P I+HRD++ +NI +       KI +  LA                  AP   
Sbjct: 127 FLHTRTPP-IIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMY 185

Query: 482 TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM 541
                   DV+AFG+ +LE+ + +      +N   A +++ +         +        
Sbjct: 186 EEKYDESVDVYAFGMCMLEMATSEYPYSECQN--AAQIYRRVT-----SGVKPASFDKVA 238

Query: 542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVV 579
            P ++             +   C       R ++ +++
Sbjct: 239 IPEVKE------------IIEGCIRQNKDERYSIKDLL 264

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 1e-30
 Identities = 63/296 (21%), Positives = 116/296 (39%), Gaps = 69/296 (23%)

Query: 341 IGK----SVYRATIDG----KVLAVKKIKEDVTE--------ELRILQRI-NHANLVKLM 383
           IG+     V +A I         A+K++KE  ++        EL +L ++ +H N++ L+
Sbjct: 18  IGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLL 77

Query: 384 GVSSDSQGNRFLVYEYAENGSLDKWLH------PKSKSSSSSGSVIFLTWSQRLRVALDV 437
           G     +G  +L  EYA +G+L  +L            + ++ +   L+  Q L  A DV
Sbjct: 78  GACEH-RGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADV 136

Query: 438 ANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM----------- 486
           A G+ Y+ +      +HRD+   NI +   + AKIA+F L+      V            
Sbjct: 137 ARGMDYLSQK---QFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWM 193

Query: 487 -----------PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREE 535
                         DV+++GV+L E++S                                
Sbjct: 194 AIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT--------------------CA 233

Query: 536 RLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTET 591
            L   +        P++    +  L R C  +K   RP+ A+++ +L+ + +  +T
Sbjct: 234 ELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKT 289

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 3e-30
 Identities = 60/292 (20%), Positives = 107/292 (36%), Gaps = 76/292 (26%)

Query: 341 IGK----SVYRATID-----GKVLAVKKIK--------EDVTEELRILQRINHANLVKLM 383
           IG+     VY  T+          AVK +              E  I++  +H N++ L+
Sbjct: 35  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 94

Query: 384 GVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQY 443
           G+   S+G+  +V  Y ++G L  ++  ++            T    +   L VA G+++
Sbjct: 95  GICLRSEGSPLVVLPYMKHGDLRNFIRNETH---------NPTVKDLIGFGLQVAKGMKF 145

Query: 444 MHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA---------------------- 481
           +        VHRD+   N  LD +F  K+A+F LA                         
Sbjct: 146 LASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA 202

Query: 482 -----TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREER 536
                T     K DV++FGV+L EL++         N     ++        ++ +R  +
Sbjct: 203 LESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVY-------LLQGRRLLQ 255

Query: 537 LRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS 588
                DP             L  +   C   K+  RP+ +E+V  +S +  +
Sbjct: 256 PEYCPDP-------------LYEVMLKCWHPKAEMRPSFSELVSRISAIFST 294

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (295), Expect = 3e-30
 Identities = 55/285 (19%), Positives = 100/285 (35%), Gaps = 78/285 (27%)

Query: 341 IGK----SVYRATI----DGKVLAVKKIKEDVTE---------ELRILQRINHANLVKLM 383
           +G     +V +         K +AVK +K +  +         E  ++Q++++  +V+++
Sbjct: 15  LGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMI 74

Query: 384 GVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQY 443
           G+      +  LV E AE G L+K+L               +     + +   V+ G++Y
Sbjct: 75  GIC--EAESWMLVMEMAELGPLNKYLQQNRH----------VKDKNIIELVHQVSMGMKY 122

Query: 444 MHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA-----------------------AP 480
           + E    + VHRD+   N+ L ++  AKI++F L+                       AP
Sbjct: 123 LEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAP 179

Query: 481 ---ATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERL 537
                     K DV++FGV++ E  S  +       G                      L
Sbjct: 180 ECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVT----------------AML 223

Query: 538 RNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL 582
                    +  P +    +  L   C      +RP  A V   L
Sbjct: 224 EKGERMGCPAGCPRE----MYDLMNLCWTYDVENRPGFAAVELRL 264

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 8e-30
 Identities = 52/286 (18%), Positives = 99/286 (34%), Gaps = 77/286 (26%)

Query: 337 EHYSIGK--------SVYRAT--IDGKVLAVKKIK--------EDVTEELRILQRINHAN 378
           E + + +         V  A   +  + +AVK +         E++ +E+ I + +NH N
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64

Query: 379 LVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVA 438
           +VK  G   +    ++L  EY   G L   + P             +      R    + 
Sbjct: 65  VVKFYGHRREG-NIQYLFLEYCSGGELFDRIEPDIG----------MPEPDAQRFFHQLM 113

Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM------------ 486
            G+ Y+H      I HRDI+  N+ LD R   KI++F LA     +              
Sbjct: 114 AGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLP 170

Query: 487 --------------PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEK 532
                            DV++ G+VL  +L+G+       +  +   + + +     E+K
Sbjct: 171 YVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSD--SCQEYSDWK-----EKK 223

Query: 533 REERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEV 578
                   +D    +            L +    + S +R  + ++
Sbjct: 224 TYLNPWKKIDSAPLAL-----------LHKILVENPS-ARITIPDI 257

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  118 bits (296), Expect = 1e-29
 Identities = 52/304 (17%), Positives = 107/304 (35%), Gaps = 79/304 (25%)

Query: 316 YLGKPIVYEIEVIMESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKI----- 360
           Y  +P+  + + +++       HY I +         V+R T    G   A K +     
Sbjct: 12  YYPQPVEIKHDHVLD-------HYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHE 64

Query: 361 --KEDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSS 418
             KE V +E++ +  + H  LV L     D      ++YE+   G L + +  +      
Sbjct: 65  SDKETVRKEIQTMSVLRHPTLVNLHDAFED-DNEMVMIYEFMSGGELFEKVADEHNK--- 120

Query: 419 SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF--KAKIANFS 476
                 ++  + +     V  GL +MHE+   + VH D++  NI   ++   + K+ +F 
Sbjct: 121 ------MSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFG 171

Query: 477 LAAPATNDVM----------------------PKFDVFAFGVVLLELLSGKKATRTTENG 514
           L A                                D+++ GV+   LLSG        + 
Sbjct: 172 LTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDD 231

Query: 515 KTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPN 574
           +T      +R V   +   ++   + +  + + F           + +    D + +R  
Sbjct: 232 ET------LRNVKSCDWNMDDSAFSGISEDGKDF-----------IRKLLLADPN-TRMT 273

Query: 575 MAEV 578
           + + 
Sbjct: 274 IHQA 277

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (290), Expect = 1e-29
 Identities = 60/305 (19%), Positives = 114/305 (37%), Gaps = 81/305 (26%)

Query: 337 EHYSIGK--------SVYRATIDG------KVLAVKKIKEDVTE--------ELRILQRI 374
              +  K         VY+  +          +A+K +K   TE        E  I+ + 
Sbjct: 7   SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF 66

Query: 375 NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVA 434
           +H N+++L GV S       ++ EY ENG+LDK+L  K             +  Q + + 
Sbjct: 67  SHHNIIRLEGVISK-YKPMMIITEYMENGALDKFLREKDG---------EFSVLQLVGML 116

Query: 435 LDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA---------------- 478
             +A G++Y+      + VHRD+   NI ++S    K+++F L+                
Sbjct: 117 RGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGG 173

Query: 479 -------AP---ATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLK 528
                  AP   +        DV++FG+V+ E+++  +                      
Sbjct: 174 KIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERP-------------------- 213

Query: 529 VEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS 588
             E     +   ++       P+D   ++  L   C   +   RP  A++V  L  L ++
Sbjct: 214 YWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA 273

Query: 589 TETLE 593
            ++L+
Sbjct: 274 PDSLK 278

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  117 bits (294), Expect = 2e-29
 Identities = 53/286 (18%), Positives = 103/286 (36%), Gaps = 72/286 (25%)

Query: 334 NLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK-------EDVTEELRILQRINH 376
           ++ ++Y I +         V+R      G+V   K I          V  E+ I+ +++H
Sbjct: 26  SVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHH 85

Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALD 436
             L+ L     D +    L+ E+   G L   +  +            ++ ++ +     
Sbjct: 86  PKLINLHDAFED-KYEMVLILEFLSGGELFDRIAAEDYK---------MSEAEVINYMRQ 135

Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF--KAKIANFSLAAPATNDVM-------- 486
              GL++MHEH   SIVH DI+  NI  +++     KI +F LA     D +        
Sbjct: 136 ACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATA 192

Query: 487 --------------PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEK 532
                            D++A GV+   LLSG       ++ +T      ++ V + + +
Sbjct: 193 EFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLET------LQNVKRCDWE 246

Query: 533 REERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEV 578
            +E   + + P  + F           +      +    R  + + 
Sbjct: 247 FDEDAFSSVSPEAKDF-----------IKNLLQKEPR-KRLTVHDA 280

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 5e-29
 Identities = 53/292 (18%), Positives = 95/292 (32%), Gaps = 79/292 (27%)

Query: 337 EHYSIGK--------SVYRATI-----DGKVLAVKKIK--------EDVTEELRILQRIN 375
           E   +G+         V++            +A+K  K        E   +E   +++ +
Sbjct: 7   ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 66

Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVAL 435
           H ++VKL+GV ++     +++ E    G L  +L  +  S         L  +  +  A 
Sbjct: 67  HPHIVKLIGVITE--NPVWIIMELCTLGELRSFLQVRKYS---------LDLASLILYAY 115

Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND----------- 484
            ++  L Y+        VHRDI   N+ + S    K+ +F L+    +            
Sbjct: 116 QLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLP 172

Query: 485 -------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE 531
                             DV+ FGV + E+L           G       +  +V+    
Sbjct: 173 IKWMAPESINFRRFTSASDVWMFGVCMWEILMH---------GVKPFQGVKNNDVI---- 219

Query: 532 KREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS 583
               R+ N     +    P      L +L   C       RP   E+   LS
Sbjct: 220 ---GRIENGERLPMPPNCPPT----LYSLMTKCWAYDPSRRPRFTELKAQLS 264

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (287), Expect = 6e-29
 Identities = 41/226 (18%), Positives = 86/226 (38%), Gaps = 61/226 (26%)

Query: 326 EVIME------STMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK-------E 362
           E I+E      S  +  + Y+  +        +VY A     G+ +A++++        E
Sbjct: 3   EEILEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKE 62

Query: 363 DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSV 422
            +  E+ +++   + N+V  +          ++V EY   GSL   +             
Sbjct: 63  LIINEILVMRENKNPNIVNYLDSYLV-GDELWVVMEYLAGGSLTDVVTETCMD------- 114

Query: 423 IFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT 482
                 Q   V  +    L+++H +    ++HRDI+++NI L      K+ +F   A  T
Sbjct: 115 ----EGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT 167

Query: 483 NDVM-----------------------PKFDVFAFGVVLLELLSGK 505
            +                         PK D+++ G++ +E++ G+
Sbjct: 168 PEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGE 213

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 1e-28
 Identities = 60/307 (19%), Positives = 105/307 (34%), Gaps = 77/307 (25%)

Query: 337 EHYSIGK--------SVYRAT-------IDGKVLAVKKIKEDVT---------EELRILQ 372
           +   +GK         V  A           + +AVK +KE  T         E   ++ 
Sbjct: 13  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 72

Query: 373 RINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSV------IFLT 426
             +H N+V L+G  +   G   ++ E+ + G+L  +L  K                 FLT
Sbjct: 73  IGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLT 132

Query: 427 WSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND-- 484
               +  +  VA G++++        +HRD+   NI L  +   KI +F LA     D  
Sbjct: 133 LEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 189

Query: 485 -----------------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWK 521
                                     + DV++FGV+L E+ S                  
Sbjct: 190 YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSL---------------GA 234

Query: 522 EIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN 581
                +K++E+   RL+         +   +    +      C   +   RP  +E+V +
Sbjct: 235 SPYPGVKIDEEFCRRLKEGTRMRAPDYTTPE----MYQTMLDCWHGEPSQRPTFSELVEH 290

Query: 582 LSVLTQS 588
           L  L Q+
Sbjct: 291 LGNLLQA 297

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (282), Expect = 3e-28
 Identities = 60/310 (19%), Positives = 109/310 (35%), Gaps = 81/310 (26%)

Query: 337 EHYSIGK--------SVYRAT---------IDGKVLAVKKIKEDVTE--------ELRIL 371
           +   +GK         V  A               +AVK +K D TE        E+ ++
Sbjct: 13  DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM 72

Query: 372 QRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSS------SSSGSVIF 424
           + I  H N++ L+G  +   G  +++ EYA  G+L ++L  +           S      
Sbjct: 73  KMIGKHKNIINLLGACTQ-DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQ 131

Query: 425 LTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND 484
           L+    +  A  VA G++Y+        +HRD+   N+ +      KIA+F LA    + 
Sbjct: 132 LSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI 188

Query: 485 VM-------------------------PKFDVFAFGVVLLELLSGKKATRTTENGKTAVL 519
                                       + DV++FGV+L E+ +   +           L
Sbjct: 189 DYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP--VEEL 246

Query: 520 WKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVV 579
           +K ++E  +++                   P +    L  + R C       RP   ++V
Sbjct: 247 FKLLKEGHRMD------------------KPSNCTNELYMMMRDCWHAVPSQRPTFKQLV 288

Query: 580 FNLSVLTQST 589
            +L  +   T
Sbjct: 289 EDLDRIVALT 298

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 4e-28
 Identities = 52/294 (17%), Positives = 104/294 (35%), Gaps = 72/294 (24%)

Query: 337 EHYSIGK--------SVYRATI-------DGKVLAVKKIKEDVTE--------ELRILQR 373
           E  ++ +         VY               +A+K + E  +         E  +++ 
Sbjct: 20  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKE 79

Query: 374 INHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRV 433
            N  ++V+L+GV S       ++ E    G L  +L     + +++  +   + S+ +++
Sbjct: 80  FNCHHVVRLLGVVSQ-GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQM 138

Query: 434 ALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND--------- 484
           A ++A+G+ Y++ +     VHRD+   N  +   F  KI +F +                
Sbjct: 139 AGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKG 195

Query: 485 ----------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLK 528
                                DV++FGVVL E+ +  +      +               
Sbjct: 196 LLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLS--------------- 240

Query: 529 VEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNL 582
                E+ LR  M+  L    P +    L  L R C       RP+  E++ ++
Sbjct: 241 ----NEQVLRFVMEGGLLDK-PDNCPDMLFELMRMCWQYNPKMRPSFLEIISSI 289

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 9e-28
 Identities = 51/284 (17%), Positives = 87/284 (30%), Gaps = 71/284 (25%)

Query: 335 LSEHYSIGK--------SVYRA--TIDGKVLAVKKIK------EDVTEELRILQRINHAN 378
           L E Y I +         V+R   T   K    K +K        V +E+ IL    H N
Sbjct: 3   LYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRN 62

Query: 379 LVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVA 438
           ++ L            +++E+     + + ++  +           L   + +     V 
Sbjct: 63  ILHLHESFES-MEELVMIFEFISGLDIFERINTSAFE---------LNEREIVSYVHQVC 112

Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSR--FKAKIANFSLAAPATNDVM---------- 486
             LQ++H H   +I H DIR  NI   +R     KI  F  A                  
Sbjct: 113 EALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEY 169

Query: 487 ------------PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKRE 534
                          D+++ G ++  LLSG        N +       I  ++  E   +
Sbjct: 170 YAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQI------IENIMNAEYTFD 223

Query: 535 ERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEV 578
           E     +      F           + R    ++  SR   +E 
Sbjct: 224 EEAFKEISIEAMDF-----------VDRLLVKERK-SRMTASEA 255

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 5e-27
 Identities = 59/284 (20%), Positives = 88/284 (30%), Gaps = 78/284 (27%)

Query: 341 IGK----SVYRATID-----GKVLAVKKIKEDVTE----------ELRILQRINHANLVK 381
           +G      V R   D        +AVK +K DV            E+  +  ++H NL++
Sbjct: 16  LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 75

Query: 382 LMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGL 441
           L GV         +V E A  GSL   L                      R A+ VA G+
Sbjct: 76  LYGVVLT--PPMKMVTELAPLGSLLDRLRKHQGH---------FLLGTLSRYAVQVAEGM 124

Query: 442 QYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------------- 478
            Y+        +HRD+   N+ L +R   KI +F L                        
Sbjct: 125 GYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWC 181

Query: 479 AP---ATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREE 535
           AP    T       D + FGV L E+ +  +      NG       +I   +  E +R  
Sbjct: 182 APESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG------SQILHKIDKEGERLP 235

Query: 536 RLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVV 579
           R  +                 +  +   C   K   RP    + 
Sbjct: 236 RPEDCPQ-------------DIYNVMVQCWAHKPEDRPTFVALR 266

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 6e-27
 Identities = 41/214 (19%), Positives = 75/214 (35%), Gaps = 59/214 (27%)

Query: 337 EHYSIGK--------SVYRAT--IDGKVLAVKKIK----------EDVTEELRILQRINH 376
           E +  GK        +V  A      +  A+K ++            VT E  ++ R++H
Sbjct: 8   EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 67

Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALD 436
              VKL     D     +    YA+NG L K++                  +       +
Sbjct: 68  PFFVKLYFTFQD-DEKLYFGLSYAKNGELLKYIRKIGS----------FDETCTRFYTAE 116

Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA------------------ 478
           + + L+Y+H      I+HRD++  NI L+     +I +F  A                  
Sbjct: 117 IVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGT 173

Query: 479 ----AP---ATNDVMPKFDVFAFGVVLLELLSGK 505
               +P            D++A G ++ +L++G 
Sbjct: 174 AQYVSPELLTEKSACKSSDLWALGCIIYQLVAGL 207

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  105 bits (263), Expect = 1e-25
 Identities = 54/288 (18%), Positives = 97/288 (33%), Gaps = 75/288 (26%)

Query: 334 NLSEHYSIGK--------SVYRAT--IDGKVLAVKKIKEDVTE--------ELRILQRIN 375
           ++ + Y             V  A      K++A+K I +   E        E+ +L +I 
Sbjct: 6   DIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIK 65

Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVAL 435
           H N+V L  +     G+ +L+ +    G L   +  K           F T     R+  
Sbjct: 66  HPNIVALDDIYES-GGHLYLIMQLVSGGELFDRIVEKG----------FYTERDASRLIF 114

Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNI---QLDSRFKAKIANFSLA-------------- 478
            V + ++Y+H+     IVHRD++  N+    LD   K  I++F L+              
Sbjct: 115 QVLDAVKYLHDL---GIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACG 171

Query: 479 -----AP---ATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE 530
                AP   A        D ++ GV+   LL G        + K         ++LK E
Sbjct: 172 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKL------FEQILKAE 225

Query: 531 EKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEV 578
            + +    + +  + + F           +      D    R    + 
Sbjct: 226 YEFDSPYWDDISDSAKDF-----------IRHLMEKDPE-KRFTCEQA 261

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  103 bits (258), Expect = 2e-25
 Identities = 52/299 (17%), Positives = 94/299 (31%), Gaps = 91/299 (30%)

Query: 337 EHYSIGK--------SVYRAT--IDGKVLAVKKIK----------------EDVTEELRI 370
           E+Y   +         V R       K  AVK I                 E   +E+ I
Sbjct: 3   ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDI 62

Query: 371 LQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQ 429
           L++++ H N+++L      +    FLV++  + G L  +L  K            L+  +
Sbjct: 63  LRKVSGHPNIIQLKDTYETNT-FFFLVFDLMKKGELFDYLTEKVT----------LSEKE 111

Query: 430 RLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM--- 486
             ++   +   +  +H+    +IVHRD++  NI LD     K+ +F  +           
Sbjct: 112 TRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLRE 168

Query: 487 -------------------------PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWK 521
                                     + D+++ GV++  LL+G                 
Sbjct: 169 VCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFW------------ 216

Query: 522 EIREVLKVEEKREERLRNWMDPNLESFYPIDGALS--LATLARACTMDKSLSRPNMAEV 578
                     K+   LR  M  N +   P     S  +  L     + +   R    E 
Sbjct: 217 --------HRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEA 267

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  105 bits (263), Expect = 3e-25
 Identities = 44/262 (16%), Positives = 81/262 (30%), Gaps = 69/262 (26%)

Query: 332 TMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIKEDVT-------------EEL 368
           TMN    +S+ +         VY       GK+ A+K + +                  L
Sbjct: 2   TMN---DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIML 58

Query: 369 RILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWS 428
            ++   +   +V +             + +    G L   L                + +
Sbjct: 59  SLVSTGDCPFIVCMSYAFHT-PDKLSFILDLMNGGDLHYHLSQHGVF----------SEA 107

Query: 429 QRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM-- 486
                A ++  GL++MH      +V+RD++  NI LD     +I++  LA   +      
Sbjct: 108 DMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHA 164

Query: 487 --------------------PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREV 526
                                  D F+ G +L +LL G    R  +        K+  E+
Sbjct: 165 SVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHK-------TKDKHEI 217

Query: 527 LKVEEKREERLRNWMDPNLESF 548
            ++       L +   P L S 
Sbjct: 218 DRMTLTMAVELPDSFSPELRSL 239

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 1e-24
 Identities = 40/273 (14%), Positives = 99/273 (36%), Gaps = 37/273 (13%)

Query: 341 IGK----SVYRAT--IDGKVL----AVKKIKEDVTE--------ELRILQRINHANLVKL 382
           +G     +VY+     +G+ +    A+K+++E  +         E  ++  +++ ++ +L
Sbjct: 17  LGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRL 76

Query: 383 MGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQ 442
           +G+         L+ +    G L  ++     +               L   + +A G+ 
Sbjct: 77  LGICLT--STVQLITQLMPFGCLLDYVREHKDNIG---------SQYLLNWCVQIAKGMN 125

Query: 443 YMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAA---PATNDVMPKFDVFAFGVVLL 499
           Y+ +     +VHRD+   N+ + +    KI +F LA        +   +        + L
Sbjct: 126 YLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 182

Query: 500 ELLSGKKATRTTENGKTAVLWKEIREVLKV--EEKREERLRNWMDPNLESFYPIDGALSL 557
           E +  +  T  ++     V   E+        +      + + ++       P    + +
Sbjct: 183 ESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDV 242

Query: 558 ATLARACTMDKSLSRPNMAEVVFNLSVLTQSTE 590
             +   C M  + SRP   E++   S + +  +
Sbjct: 243 YMIMVKCWMIDADSRPKFRELIIEFSKMARDPQ 275

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  101 bits (252), Expect = 2e-24
 Identities = 42/221 (19%), Positives = 85/221 (38%), Gaps = 62/221 (28%)

Query: 334 NLSEHYSIGK--------SVYRAT--IDGKVLAVKKIKEDVTE----------ELRILQR 373
           +LS+ Y +G+         V+ A      + +AVK ++ D+            E +    
Sbjct: 4   HLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAA 63

Query: 374 INHANLVKLMGV---SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQR 430
           +NH  +V +       + +    ++V EY +  +L   +H +            +T  + 
Sbjct: 64  LNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGP----------MTPKRA 113

Query: 431 LRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND------ 484
           + V  D    L + H++    I+HRD++  NI + +    K+ +F +A    +       
Sbjct: 114 IEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQ 170

Query: 485 --------------------VMPKFDVFAFGVVLLELLSGK 505
                               V  + DV++ G VL E+L+G+
Sbjct: 171 TAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGE 211

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.9 bits (248), Expect = 2e-23
 Identities = 53/247 (21%), Positives = 85/247 (34%), Gaps = 54/247 (21%)

Query: 341 IGK----SVYRAT--IDGKVLAVKKIKED---VTEELRILQRINHANLVKLMGVSSDSQG 391
           IG      VY+A     G+++A+KK+ +D      EL+I+++++H N+V+L      S  
Sbjct: 28  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGE 87

Query: 392 NR-----FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE 446
            +      LV +Y          H      +       L           +   L Y+H 
Sbjct: 88  KKDEVYLNLVLDYVPETVYRVARHYSRAKQT-------LPVIYVKLYMYQLFRSLAYIHS 140

Query: 447 HAQPSIVHRDIRTNNIQLDSR-FKAKIANFSLAAPATNDVM------------------- 486
                I HRDI+  N+ LD      K+ +F  A                           
Sbjct: 141 F---GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGA 197

Query: 487 ----PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD 542
                  DV++ G VL ELL G+                ++ E++KV           M+
Sbjct: 198 TDYTSSIDVWSAGCVLAELLLGQPIFPGDSG------VDQLVEIIKVLGTPTREQIREMN 251

Query: 543 PNLESFY 549
           PN   F 
Sbjct: 252 PNYTEFK 258

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.0 bits (246), Expect = 2e-23
 Identities = 53/289 (18%), Positives = 90/289 (31%), Gaps = 70/289 (24%)

Query: 337 EHYSIGK--------SVYRAT--IDGKVLAVKKIKEDV-----------TEELRILQRIN 375
           E + + K         V+ A      +  A+K +K+DV            E+  +     
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 61

Query: 376 HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVAL 435
           H  L  +       + N F V EY   G L   +    K             S+    A 
Sbjct: 62  HPFLTHMFCTFQT-KENLFFVMEYLNGGDLMYHIQSCHK----------FDLSRATFYAA 110

Query: 436 DVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA----------------- 478
           ++  GLQ++H      IV+RD++ +NI LD     KIA+F +                  
Sbjct: 111 EIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTP 167

Query: 479 ---AP---ATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEK 532
              AP            D ++FGV+L E+L G+               ++  E+      
Sbjct: 168 DYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHG----------QDEEELFHSIRM 217

Query: 533 REERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN 581
                  W++   +    +          R          P   E+ + 
Sbjct: 218 DNPFYPRWLEKEAKDL--LVKLFVREPEKRLGVRGDIRQHPLFREINWE 264

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 98.4 bits (244), Expect = 3e-23
 Identities = 41/299 (13%), Positives = 88/299 (29%), Gaps = 77/299 (25%)

Query: 329 MESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK-----EDVTEELRILQR 373
           ME  + +   Y +G+         +Y  T    G+ +A+K          +  E +I + 
Sbjct: 1   ME--LRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKM 58

Query: 374 INHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRV 433
           +     +  +           +V E       D +     K           +    L +
Sbjct: 59  MQGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRK----------FSLKTVLLL 108

Query: 434 ALDVANGLQYMHEHAQPSIVHRDIRTNNI---QLDSRFKAKIANFSLA------------ 478
           A  + + ++Y+H     + +HRD++ +N             I +F LA            
Sbjct: 109 ADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHI 165

Query: 479 ---------------AP---ATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLW 520
                          +       +   + D+ + G VL+    G    +           
Sbjct: 166 PYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQ----------G 215

Query: 521 KEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVV 579
            +     +  E+  E+  +     L   YP +     AT    C   +   +P+ + + 
Sbjct: 216 LKAATKRQKYERISEKKMSTPIEVLCKGYPSE----FATYLNFCRSLRFDDKPDYSYLR 270

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 95.2 bits (236), Expect = 4e-22
 Identities = 40/210 (19%), Positives = 75/210 (35%), Gaps = 54/210 (25%)

Query: 337 EHYSIGK--------SVYRAT--IDGKVLAVKKIK----------EDVTEELRILQRINH 376
           + + I +         V+      +G+  A+K +K          E   +E  +L  + H
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH 63

Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALD 436
             ++++ G   D     F++ +Y E G L   L    +                   A +
Sbjct: 64  PFIIRMWGTFQD-AQQIFMIMDYIEGGELFSLLRKSQRFP----------NPVAKFYAAE 112

Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM---------- 486
           V   L+Y+H      I++RD++  NI LD     KI +F  A    +             
Sbjct: 113 VCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIA 169

Query: 487 ----------PKFDVFAFGVVLLELLSGKK 506
                        D ++FG+++ E+L+G  
Sbjct: 170 PEVVSTKPYNKSIDWWSFGILIYEMLAGYT 199

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.2 bits (236), Expect = 6e-22
 Identities = 32/202 (15%), Positives = 69/202 (34%), Gaps = 48/202 (23%)

Query: 341 IGK----SVYRAT--IDGKVLAVKKIK--EDVTEELRILQRI-NHANLVKLMGV---SSD 388
           +G      V +       +  A+K ++       E+ +  R     ++V+++ V      
Sbjct: 20  LGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYA 79

Query: 389 SQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA 448
            +    +V E  + G L   +  +   +         T  +   +   +   +QY+H   
Sbjct: 80  GRKCLLIVMECLDGGELFSRIQDRGDQA--------FTEREASEIMKSIGEAIQYLHSI- 130

Query: 449 QPSIVHRDIRTNNIQLDSRFK---AKIANFSLAAPATNDVM------------------- 486
             +I HRD++  N+   S+      K+ +F  A   T+                      
Sbjct: 131 --NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPE 188

Query: 487 ---PKFDVFAFGVVLLELLSGK 505
                 D+++ GV++  LL G 
Sbjct: 189 KYDKSCDMWSLGVIMYILLCGY 210

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.1 bits (233), Expect = 7e-22
 Identities = 58/294 (19%), Positives = 95/294 (32%), Gaps = 81/294 (27%)

Query: 334 NLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK-------------EDVTEELRI 370
           N+ ++Y  G+         V +      G   A K IK             ED+  E+ I
Sbjct: 7   NVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSI 66

Query: 371 LQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQR 430
           L+ I H N++ L  V  + + +  L+ E    G L  +L  K            LT  + 
Sbjct: 67  LKEIQHPNVITLHEVYEN-KTDVILILELVAGGELFDFLAEKES----------LTEEEA 115

Query: 431 LRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR----FKAKIANFSLAAPATNDVM 486
                 + NG+ Y+H      I H D++  NI L  R     + KI +F LA        
Sbjct: 116 TEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNE 172

Query: 487 ----------------------PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIR 524
                                  + D+++ GV+   LLSG          +T      + 
Sbjct: 173 FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQET------LA 226

Query: 525 EVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEV 578
            V  V  + E+   +      + F           + R    D    R  + + 
Sbjct: 227 NVSAVNYEFEDEYFSNTSALAKDF-----------IRRLLVKDPK-KRMTIQDS 268

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.8 bits (232), Expect = 1e-21
 Identities = 48/207 (23%), Positives = 81/207 (39%), Gaps = 56/207 (27%)

Query: 341 IGK----SVYRAT--IDGKVLAVKKIK------------EDVTEELRILQRINHANLVKL 382
           +G+    +VY+A      +++A+KKIK                 E+++LQ ++H N++ L
Sbjct: 6   LGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGL 65

Query: 383 MGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQ 442
           +      + N  LV+++ E                       LT S      L    GL+
Sbjct: 66  LDAFGH-KSNISLVFDFMETDLEVIIKDNSLV----------LTPSHIKAYMLMTLQGLE 114

Query: 443 YMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM---------------- 486
           Y+H+H    I+HRD++ NN+ LD     K+A+F LA    +                   
Sbjct: 115 YLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPEL 171

Query: 487 --------PKFDVFAFGVVLLELLSGK 505
                      D++A G +L ELL   
Sbjct: 172 LFGARMYGVGVDMWAVGCILAELLLRV 198

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 92.3 bits (228), Expect = 3e-21
 Identities = 53/283 (18%), Positives = 94/283 (33%), Gaps = 59/283 (20%)

Query: 341 IGK----SVYRAT-IDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVS 386
           IG+     VY+A    G+  A+KKI+              E+ IL+ + H+N+VKL  V 
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVI 69

Query: 387 SDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE 446
              +    LV+E+ +          +            L         L + NG+ Y H+
Sbjct: 70  HT-KKRLVLVFEHLDQDLKKLLDVCEGG----------LESVTAKSFLLQLLNGIAYCHD 118

Query: 447 HAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM-------------------- 486
                ++HRD++  N+ ++   + KIA+F LA      V                     
Sbjct: 119 R---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGS 175

Query: 487 ----PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD 542
                  D+++ G +  E+++G             +    I      +           D
Sbjct: 176 KKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYD 235

Query: 543 PNLESFYPIDGALSLATLARACT--MDKSLS-----RPNMAEV 578
           PN   + P+     L  L  +    + K L      R    + 
Sbjct: 236 PNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQA 278

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.6 bits (229), Expect = 5e-21
 Identities = 40/223 (17%), Positives = 78/223 (34%), Gaps = 62/223 (27%)

Query: 331 STMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK--------EDVTEELRILQ 372
              ++   Y+            V  A   ++   +A+KKI         +    E++IL 
Sbjct: 2   QVFDVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILL 61

Query: 373 RINHANLVKLMGV---SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQ 429
           R  H N++ +  +    +  Q     +  +     L K L  +            L+   
Sbjct: 62  RFRHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQH-----------LSNDH 110

Query: 430 RLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND----- 484
                  +  GL+Y+H     +++HRD++ +N+ L++    KI +F LA  A  D     
Sbjct: 111 ICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTG 167

Query: 485 ----------------------VMPKFDVFAFGVVLLELLSGK 505
                                      D+++ G +L E+LS +
Sbjct: 168 FLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNR 210

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.1 bits (225), Expect = 8e-21
 Identities = 39/212 (18%), Positives = 79/212 (37%), Gaps = 56/212 (26%)

Query: 337 EHYSIGK--------SVYRAT--IDGKVLAVKKIK---------EDVTEELRILQRINHA 377
           E++   +         VY+A   + G+V+A+KKI+              E+ +L+ +NH 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61

Query: 378 NLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDV 437
           N+VKL+ V    +   +LV+E+                         +           +
Sbjct: 62  NIVKLLDVIHT-ENKLYLVFEFLHQDLKKFMDASALTG---------IPLPLIKSYLFQL 111

Query: 438 ANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDV------------ 485
             GL + H H    ++HRD++  N+ +++    K+A+F LA      V            
Sbjct: 112 LQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWY 168

Query: 486 ------------MPKFDVFAFGVVLLELLSGK 505
                           D+++ G +  E+++ +
Sbjct: 169 RAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 200

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.7 bits (224), Expect = 1e-20
 Identities = 48/297 (16%), Positives = 97/297 (32%), Gaps = 68/297 (22%)

Query: 337 EHYSIGK--------SVYRATI---DGKVLAVKKIKEDVTEE------------LRILQR 373
           + Y             V++A      G+ +A+K+++    EE            LR L+ 
Sbjct: 7   QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLET 66

Query: 374 INHANLVKLMGVSSDSQGNR----FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQ 429
             H N+V+L  V + S+ +R     LV+E+ +                       +    
Sbjct: 67  FEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPG---------VPTET 117

Query: 430 RLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM--- 486
              +   +  GL ++H H    +VHRD++  NI + S  + K+A+F LA   +  +    
Sbjct: 118 IKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTS 174

Query: 487 -------------------PKFDVFAFGVVLLELLSGKKATRTTENGKT------AVLWK 521
                                 D+++ G +  E+   K   R + +          +   
Sbjct: 175 VVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLP 234

Query: 522 EIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEV 578
              +  +      +   +     +E F      L    L +  T + +  R +    
Sbjct: 235 GEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPA-KRISAYSA 290

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.2 bits (218), Expect = 5e-20
 Identities = 36/219 (16%), Positives = 76/219 (34%), Gaps = 61/219 (27%)

Query: 335 LSEHYSIGK--------SVYRAT--IDGKVLAVKKIKED-------------VTEELRIL 371
           L   Y +G         SVY      D   +A+K +++D             V  E+ +L
Sbjct: 2   LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLL 61

Query: 372 QRIN--HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQ 429
           ++++   + +++L+        +  L+ E  E          +  +         L    
Sbjct: 62  KKVSSGFSGVIRLLDWFER-PDSFVLILERPEPVQDLFDFITERGA---------LQEEL 111

Query: 430 RLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD-SRFKAKIANFSLAAPATNDVM-- 486
                  V   +++ H      ++HRDI+  NI +D +R + K+ +F   A   + V   
Sbjct: 112 ARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD 168

Query: 487 --------------------PKFDVFAFGVVLLELLSGK 505
                                   V++ G++L +++ G 
Sbjct: 169 FDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGD 207

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 87.6 bits (216), Expect = 1e-19
 Identities = 34/295 (11%), Positives = 78/295 (26%), Gaps = 77/295 (26%)

Query: 335 LSEHYSIGK--------SVYRAT--IDGKVLAVKKIK-----EDVTEELRILQRINHANL 379
           +  HY +G+         ++  T  ++ + +A+K          + +E R  + +     
Sbjct: 3   VGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTG 62

Query: 380 VKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVAN 439
           +  +        +  LV +       D       K           +       A  +  
Sbjct: 63  IPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLCGRK----------FSVKTVAMAAKQMLA 112

Query: 440 GLQYMHEHAQPSIVHRDIRTNNIQLDSRF-----KAKIANFSLA---------------- 478
            +Q +HE    S+V+RDI+ +N  +            + +F +                 
Sbjct: 113 RVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYRE 169

Query: 479 -----------AP---ATNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIR 524
                      +       +   + D+ A G V +  L G    +  +       ++ I 
Sbjct: 170 KKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIG 229

Query: 525 EVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVV 579
           E  K      E    + +                            + P+   + 
Sbjct: 230 E-KKQSTPLRELCAGFPEE-------------FYKYMHYARNLAFDATPDYDYLQ 270

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (215), Expect = 2e-19
 Identities = 45/215 (20%), Positives = 84/215 (39%), Gaps = 63/215 (29%)

Query: 341 IGK----SVYRAT--IDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGV 385
           IG+     V++A     G+ +A+KK+               E++ILQ + H N+V L+ +
Sbjct: 18  IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 77

Query: 386 SSD-------SQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVA 438
                      +G+ +LV+++ E+       +   K           T S+  RV   + 
Sbjct: 78  CRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK----------FTLSEIKRVMQMLL 127

Query: 439 NGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------------- 482
           NGL Y+H +    I+HRD++  N+ +      K+A+F LA   +                
Sbjct: 128 NGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVT 184

Query: 483 ------------NDVMPKFDVFAFGVVLLELLSGK 505
                        D  P  D++  G ++ E+ +  
Sbjct: 185 LWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRS 219

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.6 bits (216), Expect = 2e-19
 Identities = 48/306 (15%), Positives = 104/306 (33%), Gaps = 71/306 (23%)

Query: 328 IMESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK---------EDVTEEL 368
           + ++   +   Y   +        +V  A     G  +A+KK+          +    EL
Sbjct: 9   VTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYREL 68

Query: 369 RILQRINHANLVKLMGV-----SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVI 423
           R+L+ + H N++ L+ V     + D   + +LV  +          H K           
Sbjct: 69  RLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEK----------- 117

Query: 424 FLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN 483
            L   +   +   +  GL+Y+H        HRD++  N+ ++   + KI +F LA  A +
Sbjct: 118 -LGEDRIQFLVYQMLKGLRYIHAAGII---HRDLKPGNLAVNEDCELKILDFGLARQADS 173

Query: 484 DVM---------------------PKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKE 522
           ++                         D+++ G ++ E+++GK   + +++        +
Sbjct: 174 EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMK 233

Query: 523 I----------REVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSR 572
           +          R      +   + L      +  S       L++  L +   +D    R
Sbjct: 234 VTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAE-QR 292

Query: 573 PNMAEV 578
               E 
Sbjct: 293 VTAGEA 298

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.1 bits (215), Expect = 3e-19
 Identities = 44/217 (20%), Positives = 68/217 (31%), Gaps = 60/217 (27%)

Query: 332 TMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK----------EDVTEELRIL 371
           TMN    +   K         V        G+  A+K ++               E R+L
Sbjct: 3   TMN---DFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVL 59

Query: 372 QRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRL 431
           Q   H  L  L             V EYA  G L   L  +             T  +  
Sbjct: 60  QNTRHPFLTALKYAFQT-HDRLCFVMEYANGGELFFHLSRERV----------FTEERAR 108

Query: 432 RVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM----- 486
               ++ + L+Y+H      +V+RDI+  N+ LD     KI +F L     +D       
Sbjct: 109 FYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTF 165

Query: 487 ------------------PKFDVFAFGVVLLELLSGK 505
                                D +  GVV+ E++ G+
Sbjct: 166 CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 202

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (212), Expect = 6e-19
 Identities = 39/219 (17%), Positives = 77/219 (35%), Gaps = 63/219 (28%)

Query: 337 EHYSIGK--------SVYRAT-----IDGKVLAVKKIK-----------EDVTEELRILQ 372
           E++ + K         V+          GK+ A+K +K           E    E ++L+
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 83

Query: 373 RINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLR 432
            I  +  +  +  +  ++    L+ +Y   G L   L  + +           T  +   
Sbjct: 84  HIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRER----------FTEHEVQI 133

Query: 433 VALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM------ 486
              ++   L+++H+     I++RDI+  NI LDS     + +F L+     D        
Sbjct: 134 YVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDF 190

Query: 487 --------------------PKFDVFAFGVVLLELLSGK 505
                                  D ++ GV++ ELL+G 
Sbjct: 191 CGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGA 229

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (201), Expect = 9e-18
 Identities = 45/285 (15%), Positives = 93/285 (32%), Gaps = 61/285 (21%)

Query: 341 IGK----SVYRAT--IDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGV 385
           IG+    +V++A      +++A+K+++              E+ +L+ + H N+V+L  V
Sbjct: 10  IGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDV 69

Query: 386 SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMH 445
               +    LV+E+ +      +                L           +  GL + H
Sbjct: 70  LHSDK-KLTLVFEFCDQDLKKYFDSCNG----------DLDPEIVKSFLFQLLKGLGFCH 118

Query: 446 EHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDV-------------------- 485
                +++HRD++  N+ ++   + K+ANF LA      V                    
Sbjct: 119 SR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFG 175

Query: 486 ----MPKFDVFAFGVVLLELLSGKKATRTTENGK------TAVLWKEIREVLKVEEKREE 535
                   D+++ G +  EL +  +      +          +L     E      K  +
Sbjct: 176 AKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPD 235

Query: 536 RLRNWMDPNLESFYPIDGALS--LATLARACTMDKSLSRPNMAEV 578
                M P   S   +   L+     L +       + R +  E 
Sbjct: 236 YKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEA 280

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.5 bits (203), Expect = 1e-17
 Identities = 38/209 (18%), Positives = 68/209 (32%), Gaps = 54/209 (25%)

Query: 337 EHYSIGK--------SVYRAT--IDGKVLAVKKIK----------EDVTEELRILQRINH 376
           + +   K         V        G   A+K +           E    E RILQ +N 
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100

Query: 377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALD 436
             LVKL     D+  N ++V EY   G +   L    +           +       A  
Sbjct: 101 PFLVKLEFSFKDNS-NLYMVMEYVAGGEMFSHLRRIGR----------FSEPHARFYAAQ 149

Query: 437 VANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVM---------- 486
           +    +Y+H      +++RD++  N+ +D +   ++ +F  A                  
Sbjct: 150 IVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALA 206

Query: 487 ----------PKFDVFAFGVVLLELLSGK 505
                        D +A GV++ E+ +G 
Sbjct: 207 PEIILSKGYNKAVDWWALGVLIYEMAAGY 235

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (199), Expect = 3e-17
 Identities = 45/231 (19%), Positives = 89/231 (38%), Gaps = 59/231 (25%)

Query: 319 KPIVYEIEVIMESTMNLSEHYSIGK--------SVYRA--TIDGKVLAVKKIK------- 361
           +P  Y  E + ++   + E Y            SV  A  T  G  +AVKK+        
Sbjct: 1   RPTFYRQE-LNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSII 59

Query: 362 --EDVTEELRILQRINHANLVKLMGVSSDSQ----GNRFLVYEYAENGSLDKWLHPKSKS 415
             +    ELR+L+ + H N++ L+ V + ++     N   +  +     L+  +  +   
Sbjct: 60  HAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQK-- 117

Query: 416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANF 475
                    LT      +   +  GL+Y+H        HRD++ +N+ ++   + KI +F
Sbjct: 118 ---------LTDDHVQFLIYQILRGLKYIHSADII---HRDLKPSNLAVNEDCELKILDF 165

Query: 476 SLAAPATNDVM---------------------PKFDVFAFGVVLLELLSGK 505
            LA    +++                         D+++ G ++ ELL+G+
Sbjct: 166 GLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 216

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (197), Expect = 6e-17
 Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 63/229 (27%)

Query: 323 YEIEVIMESTMNLSEHYSIGK--------SVYRAT--IDGKVLAVKKIK---------ED 363
           Y +E + +ST  + + Y   K         V  A   +  + +A+KK+          + 
Sbjct: 4   YSVE-VGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKR 62

Query: 364 VTEELRILQRINHANLVKLMGV-----SSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSS 418
              EL +++ +NH N++ L+ V     + +   + +LV E  +                 
Sbjct: 63  AYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELD----- 117

Query: 419 SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA 478
                     +   +   +  G++++H       +HRD++ +NI + S    KI +F LA
Sbjct: 118 --------HERMSYLLYQMLCGIKHLHSAGI---IHRDLKPSNIVVKSDCTLKILDFGLA 166

Query: 479 APATNDVM----------------------PKFDVFAFGVVLLELLSGK 505
             A    M                         D+++ G ++ E++  K
Sbjct: 167 RTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 215

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 79.1 bits (194), Expect = 1e-16
 Identities = 34/209 (16%), Positives = 72/209 (34%), Gaps = 56/209 (26%)

Query: 337 EHYSIGK--------SVYRAT--IDGKVLAVKKIK----EDVTEELRILQRIN-HANLVK 381
           + Y + +         V+ A    + + + VK +K    + +  E++IL+ +    N++ 
Sbjct: 35  DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIIT 94

Query: 382 LMGVSSDSQGNR-FLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANG 440
           L  +  D       LV+E+  N    +                 LT         ++   
Sbjct: 95  LADIVKDPVSRTPALVFEHVNNTDFKQLYQT-------------LTDYDIRFYMYEILKA 141

Query: 441 LQYMHEHAQPSIVHRDIRTNNIQLDSRF-KAKIANFSLAAPATNDVM------------- 486
           L Y H      I+HRD++ +N+ +D    K ++ ++ LA                     
Sbjct: 142 LDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGP 198

Query: 487 ----------PKFDVFAFGVVLLELLSGK 505
                        D+++ G +L  ++  K
Sbjct: 199 ELLVDYQMYDYSLDMWSLGCMLASMIFRK 227

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.7 bits (169), Expect = 2e-13
 Identities = 31/208 (14%), Positives = 73/208 (35%), Gaps = 45/208 (21%)

Query: 341 IGK----SVYRA--TIDGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSD 388
           +G     +V+ A   ++   +A+K ++      E   +E+++LQR+N A+  K   + ++
Sbjct: 21  LGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGAN 80

Query: 389 SQGNRFLVYEYAENGSLDKWLHP-----KSKSSSSSGSVIFLTWSQRLRVALDVANGLQY 443
                   + +     +   +          +         +      +++  +  GL Y
Sbjct: 81  HILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDY 140

Query: 444 MHEHAQPSIVHRDIRTNNIQLDSR------FKAKIANFSLAAPATNDVM----------- 486
           MH      I+H DI+  N+ ++         + KIA+   A                   
Sbjct: 141 MHRR--CGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSP 198

Query: 487 ---------PKFDVFAFGVVLLELLSGK 505
                       D+++   ++ EL++G 
Sbjct: 199 EVLLGAPWGCGADIWSTACLIFELITGD 226

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 55.2 bits (132), Expect = 2e-09
 Identities = 28/171 (16%), Positives = 43/171 (25%), Gaps = 44/171 (25%)

Query: 339 YSIGK--------SVYRAT-IDGKVLAVKKIKEDVTE-----------------ELRILQ 372
            +IGK        +V+           VK  K   T                        
Sbjct: 2   DAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSA 61

Query: 373 RINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLR 432
           R     L KL G+          VY +  N  L + +  K            +       
Sbjct: 62  RNEFRALQKLQGL------AVPKVYAWEGNAVLMELIDAKELY--------RVRVENPDE 107

Query: 433 VALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN 483
           V   +   +   +      IVH D+   N+ L S     I +F  +     
Sbjct: 108 VLDMILEEVAKFYHR---GIVHGDLSQYNV-LVSEEGIWIIDFPQSVEVGE 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	615
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.97
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.95
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.76
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.81
d1y7ma2	48	Hypothetical protein YkuD, N-terminal domain {Baci	97.46
d1e0ga_	48	Membrane-bound lytic murein transclycosylase D, Ml	97.41
d1y7ma2	48	Hypothetical protein YkuD, N-terminal domain {Baci	97.37
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.18
d1e0ga_	48	Membrane-bound lytic murein transclycosylase D, Ml	96.86
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	95.81
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	92.73
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	92.07

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-44  Score=371.37  Aligned_cols=236  Identities=25%  Similarity=0.444  Sum_probs=181.6

Q ss_pred             eeHHHHHHHccccccc---------cccc----ceEEEEEE--CC---eEEEEEEcc--------HHHHHHHHHHHhcCC
Q 047629          323 YEIEVIMESTMNLSEH---------YSIG----KSVYRATI--DG---KVLAVKKIK--------EDVTEELRILQRINH  376 (615)
Q Consensus       323 ~~~~~l~~at~~~~~~---------~~iG----~~Vy~~~~--~g---~~vAvK~~~--------~~~~~Ei~~l~~l~H  376 (615)
                      ++|+++.+++.+|..+         ..+|    |.||+|..  +|   ..||||++.        +.|.+|+++|++++|
T Consensus         7 ~t~~d~~~a~~~f~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~H   86 (299)
T d1jpaa_           7 FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDH   86 (299)
T ss_dssp             GGSSSHHHHHHHHSCBCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHhhhchhhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCC
Confidence            4556677777666532         2345    58999997  33   368999874        358899999999999


Q ss_pred             CCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecC
Q 047629          377 ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRD  456 (615)
Q Consensus       377 ~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrD  456 (615)
                      ||||+++|+|.+. +..++|||||++|+|.+++.....         .++|.+++.++.|||.||+|||+++   |+|||
T Consensus        87 pnIv~l~g~~~~~-~~~~iv~Ey~~~g~L~~~~~~~~~---------~l~~~~~~~i~~qia~gl~yLH~~~---iiHrD  153 (299)
T d1jpaa_          87 PNVIHLEGVVTKS-TPVMIITEFMENGSLDSFLRQNDG---------QFTVIQLVGMLRGIAAGMKYLADMN---YVHRD  153 (299)
T ss_dssp             TTBCCEEEEECSS-SSCEEEEECCTTEEHHHHHHTTTT---------CSCHHHHHHHHHHHHHHHHHHHHTT---CCCSC
T ss_pred             CCCccEEEEEeeC-CEEEEEEEecCCCcceeeeccccC---------CCCHHHHHHHHHHHHHHHHHHhhCC---CccCc
Confidence            9999999998754 479999999999999999876543         3899999999999999999999998   99999


Q ss_pred             CCCCceeeCCCCcEEEeecCCCCCCC----------------------------CCCCCcccchhHHHHHHHHHc-CCCC
Q 047629          457 IRTNNIQLDSRFKAKIANFSLAAPAT----------------------------NDVMPKFDVFAFGVVLLELLS-GKKA  507 (615)
Q Consensus       457 lk~~NILld~~~~~kl~DFGla~~~~----------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p  507 (615)
                      |||+|||++.++.+||+|||+++...                            ..++.++|||||||+||||+| |+.|
T Consensus       154 lKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~P  233 (299)
T d1jpaa_         154 LAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERP  233 (299)
T ss_dssp             CCGGGEEECTTCCEEECCC-----------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred             cccceEEECCCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCC
Confidence            99999999999999999999997531                            124568999999999999998 8999


Q ss_pred             CCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhccc
Q 047629          508 TRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       508 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~  587 (615)
                      |......+   +..              .+..    ......+.+.+..+.+|+.+||+.||++||||+||++.|+.+.+
T Consensus       234 f~~~~~~~---~~~--------------~i~~----~~~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l~  292 (299)
T d1jpaa_         234 YWDMTNQD---VIN--------------AIEQ----DYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIR  292 (299)
T ss_dssp             TTTCCHHH---HHH--------------HHHT----TCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHH---HHH--------------HHHc----CCCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhc
Confidence            87543211   110              1111    11122344556678999999999999999999999999998877


Q ss_pred             chhhh
Q 047629          588 STETL  592 (615)
Q Consensus       588 ~~~~~  592 (615)
                      +..++
T Consensus       293 ~p~sl  297 (299)
T d1jpaa_         293 NPNSL  297 (299)
T ss_dssp             SGGGG
T ss_pred             ChhhC
Confidence            65443

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-44  Score=357.91  Aligned_cols=213  Identities=23%  Similarity=0.423  Sum_probs=169.4

Q ss_pred             ceEEEEEE-CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      |.||+|.+ +++.||||+++      +++.+|++++++++|||||+++|+|.+. +..++||||+++|+|.+++..... 
T Consensus        19 g~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~-~~~~lv~E~~~~g~L~~~l~~~~~-   96 (263)
T d1sm2a_          19 GLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQ-APICLVFEFMEHGCLSDYLRTQRG-   96 (263)
T ss_dssp             CCEEEEEETTTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSS-SSCEEEEECCTTCBHHHHHHTTTT-
T ss_pred             eEEEEEEECCCCEEEEEEECCCcCcHHHHHHHHHHHHhcCCCCcccccceeccC-CceEEEEEecCCCcHHHHhhcccc-
Confidence            58999998 68899999986      4689999999999999999999999754 479999999999999999876543 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------------  482 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------------  482 (615)
                              .++|..++.++.|+|.||+|||+++   |+||||||+|||+|+++.+||+|||+++...             
T Consensus        97 --------~~~~~~~~~i~~qia~gl~~lH~~~---iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt  165 (263)
T d1sm2a_          97 --------LFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFP  165 (263)
T ss_dssp             --------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCTTCSGGGEEECGGGCEEECSCC------------------C
T ss_pred             --------CCCHHHHHHHHHHHHHHHHhhhccc---eeecccchhheeecCCCCeEecccchheeccCCCceeecceecC
Confidence                    3899999999999999999999998   9999999999999999999999999986531             


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCCh
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPI  551 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~  551 (615)
                                 ..++.|+|||||||++|||+||+.|+.......  ....              .+.....    ...|.
T Consensus       166 ~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~--~~~~--------------~i~~~~~----~~~p~  225 (263)
T d1sm2a_         166 VKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS--EVVE--------------DISTGFR----LYKPR  225 (263)
T ss_dssp             TTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCHH--HHHH--------------HHHHTCC----CCCCT
T ss_pred             cccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCHH--HHHH--------------HHHhcCC----CCCcc
Confidence                       125668999999999999999655544332211  1111              1111111    12233


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          552 DGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       552 ~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      .+..++.+|+..||+.||++||||+||++.|+++.++
T Consensus       226 ~~~~~l~~li~~cl~~~p~~Rps~~~il~~L~~i~es  262 (263)
T d1sm2a_         226 LASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEIAES  262 (263)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhC
Confidence            4455789999999999999999999999999988654

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.9e-43  Score=357.77  Aligned_cols=214  Identities=25%  Similarity=0.380  Sum_probs=175.7

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      |.||+|.+  +|+.||||+++      +++.+|+++|++++|||||+++|+|.+. +..++||||+++|+|.+++.....
T Consensus        31 g~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~-~~~~iv~E~~~~g~l~~~l~~~~~  109 (287)
T d1opja_          31 GEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE-PPFYIITEFMTYGNLLDYLRECNR  109 (287)
T ss_dssp             SSEEEEEEGGGTEEEEEEECCTTCSCHHHHHHHHHHHHHCCCTTBCCEEEEECSS-SSCEEEEECCTTCBHHHHHHHSCT
T ss_pred             eEEEEEEECCCCeEEEEEEECCccchHHHHHHHHHHHHhCCCCCEecCCccEeeC-CeeEEEeecccCcchHHHhhhccc
Confidence            58999998  58999999986      4588999999999999999999998754 478999999999999999976443


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-----------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-----------  483 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-----------  483 (615)
                      .        .++|..++.|+.|||.||+|||+++   |+||||||+|||+++++.+||+|||+|+....           
T Consensus       110 ~--------~~~~~~~~~i~~qi~~gL~yLH~~~---iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~~~~~~g  178 (287)
T d1opja_         110 Q--------EVSAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF  178 (287)
T ss_dssp             T--------TSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSSEEETTEEE
T ss_pred             c--------chHHHHHHHHHHHHHHHHHHHHHCC---cccCccccCeEEECCCCcEEEccccceeecCCCCceeeccccc
Confidence            2        4899999999999999999999998   99999999999999999999999999976532           


Q ss_pred             -------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          484 -------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       484 -------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                   .++.|+|||||||++|||++|+.|+....+..  ...    .          .+..    ......+
T Consensus       179 ~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~--~~~----~----------~i~~----~~~~~~~  238 (287)
T d1opja_         179 PIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVY----E----------LLEK----DYRMERP  238 (287)
T ss_dssp             CGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHH----H----------HHHT----TCCCCCC
T ss_pred             cccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHH--HHH----H----------HHhc----CCCCCCC
Confidence                         24668999999999999999877765433211  111    1          1111    1222334


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      ...+..+.+|+..||+.||++||||+||++.|+.+.+.
T Consensus       239 ~~~~~~l~~li~~cl~~dP~~Rps~~ei~~~L~~~~~~  276 (287)
T d1opja_         239 EGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE  276 (287)
T ss_dssp             TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTSS
T ss_pred             ccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHh
Confidence            44556789999999999999999999999999887654

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-43  Score=355.85  Aligned_cols=215  Identities=28%  Similarity=0.471  Sum_probs=173.7

Q ss_pred             ceEEEEEECCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATIDGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||+|.+++ .||||+++         +.|.+|+++|++++|||||+++|++.+  +..++||||+++|+|.+++....
T Consensus        22 g~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~--~~~~lv~Ey~~~g~L~~~l~~~~   98 (276)
T d1uwha_          22 GTVYKGKWHG-DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA--PQLAIVTQWCEGSSLYHHLHIIE   98 (276)
T ss_dssp             CEEEEEESSS-EEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS--SSCEEEEECCCEEEHHHHHHTSC
T ss_pred             cEEEEEEECC-EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec--cEEEEEEecCCCCCHHHHHhhcc
Confidence            5899998766 59999985         358899999999999999999999753  46899999999999999997654


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                      .         .++|.+++.++.|||.||+|||+++   |+||||||+|||++.++.+||+|||+|+...           
T Consensus        99 ~---------~~~~~~~~~i~~qi~~gl~yLH~~~---ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~  166 (276)
T d1uwha_          99 T---------KFEMIKLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQL  166 (276)
T ss_dssp             C---------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTSSEEECCCCCSCC------------C
T ss_pred             C---------CCCHHHHHHHHHHHHHHHHHHhcCC---EeccccCHHHEEEcCCCCEEEccccceeeccccCCccccccc
Confidence            3         3899999999999999999999997   9999999999999999999999999986431           


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                       ..++.++|||||||+||||+||+.||.........      ...         .......|.+
T Consensus       167 ~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~~------~~~---------~~~~~~~p~~  231 (276)
T d1uwha_         167 SGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQI------IFM---------VGRGYLSPDL  231 (276)
T ss_dssp             CCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHH------HHH---------HHHTSCCCCG
T ss_pred             ccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHHH------HHH---------HhcCCCCCcc
Confidence                             11456899999999999999999999765432111      111         0112223322


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                       ...+.+.+..+.+|+.+||+.||++||||+||++.|+.+.++
T Consensus       232 -~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~~~  273 (276)
T d1uwha_         232 -SKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARS  273 (276)
T ss_dssp             -GGSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             -hhccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHc
Confidence             123334456789999999999999999999999999988764

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-43  Score=353.48  Aligned_cols=213  Identities=26%  Similarity=0.409  Sum_probs=171.2

Q ss_pred             ceEEEEEE-CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      |.||+|.+ +++.||||+++      +.+.+|+++|++++|||||+++|++.+  +..++||||+++|+|.+++..... 
T Consensus        27 g~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~--~~~~iv~Ey~~~g~L~~~~~~~~~-  103 (272)
T d1qpca_          27 GEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ--EPIYIITEYMENGSLVDFLKTPSG-  103 (272)
T ss_dssp             EEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS--SSCEEEEECCTTCBHHHHTTSHHH-
T ss_pred             cEEEEEEECCCCEEEEEEEccCcCCHHHHHHHHHHHHhCCCCCEeEEEeeecc--CCeEEEEEeCCCCcHHHHHhhcCC-
Confidence            58999999 56889999986      358999999999999999999998753  467999999999999998865432 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------------  483 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------------  483 (615)
                             ..++|.++++|+.||+.||.|||+++   |+||||||+|||+++++.+||+|||+|+....            
T Consensus       104 -------~~l~~~~~~~i~~qi~~gl~~lH~~~---ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt  173 (272)
T d1qpca_         104 -------IKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFP  173 (272)
T ss_dssp             -------HTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCC
T ss_pred             -------CCCCHHHHHHHHHHHHHHHHHHHhCC---cccCccchhheeeecccceeeccccceEEccCCccccccccCCc
Confidence                   23899999999999999999999998   99999999999999999999999999975421            


Q ss_pred             ------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCCh
Q 047629          484 ------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPI  551 (615)
Q Consensus       484 ------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~  551 (615)
                                  .++.++|||||||++|||+||+.|+.......  ...              ..+.....+.    .|.
T Consensus       174 ~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~--~~~--------------~~i~~~~~~~----~p~  233 (272)
T d1qpca_         174 IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNP--EVI--------------QNLERGYRMV----RPD  233 (272)
T ss_dssp             TTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHH--------------HHHHTTCCCC----CCT
T ss_pred             ccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCHH--HHH--------------HHHHhcCCCC----Ccc
Confidence                        13568999999999999999766654333211  111              1122222222    233


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          552 DGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       552 ~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      .....+.+|+.+||+.||++||||+||++.|+.+-.+
T Consensus       234 ~~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~fts  270 (272)
T d1qpca_         234 NCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTA  270 (272)
T ss_dssp             TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHHHcCCCHhHCcCHHHHHHHhhhhhhc
Confidence            4445689999999999999999999999999876543

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-42  Score=349.67  Aligned_cols=226  Identities=26%  Similarity=0.441  Sum_probs=176.3

Q ss_pred             cccccccc----ceEEEEEECC------eEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEE
Q 047629          335 LSEHYSIG----KSVYRATIDG------KVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV  396 (615)
Q Consensus       335 ~~~~~~iG----~~Vy~~~~~g------~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV  396 (615)
                      |...+.||    |.||+|.+.+      ..||||+++        .+|.+|+++|++++|||||+++|+|.+. +..++|
T Consensus         9 ~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~-~~~~~v   87 (283)
T d1mqba_           9 VTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKY-KPMMII   87 (283)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS-SSEEEE
T ss_pred             eEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecC-CceEEE
Confidence            33444455    5899999732      479999985        2578999999999999999999998754 479999


Q ss_pred             EeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecC
Q 047629          397 YEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFS  476 (615)
Q Consensus       397 ~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  476 (615)
                      |||+.+|+|.+++.....         .++|.+++.++.|++.||+|||+++   |+||||||+|||++.++.+||+|||
T Consensus        88 ~e~~~~~~l~~~~~~~~~---------~~~~~~~~~i~~~i~~gl~~lH~~~---iiHrDlKp~NILl~~~~~~Kl~DFG  155 (283)
T d1mqba_          88 TEYMENGALDKFLREKDG---------EFSVLQLVGMLRGIAAGMKYLANMN---YVHRDLAARNILVNSNLVCKVSDFG  155 (283)
T ss_dssp             EECCTTEEHHHHHHHTTT---------CSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCCC
T ss_pred             EEecccCcchhhhhcccc---------cccHHHHHHHHHHHHHhhhhccccc---cccCccccceEEECCCCeEEEcccc
Confidence            999999999998876543         3999999999999999999999998   9999999999999999999999999


Q ss_pred             CCCCCCC--------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHH
Q 047629          477 LAAPATN--------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVE  530 (615)
Q Consensus       477 la~~~~~--------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~  530 (615)
                      +++....                          .++.++|||||||++|||++|+.|+........  ...         
T Consensus       156 la~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~~--~~~---------  224 (283)
T d1mqba_         156 LSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHE--VMK---------  224 (283)
T ss_dssp             C-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HHH---------
T ss_pred             hhhcccCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCHHH--HHH---------
Confidence            9975311                          245689999999999999997766554332111  110         


Q ss_pred             HHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccchhhhh
Q 047629          531 EKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQSTETLE  593 (615)
Q Consensus       531 ~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~~~~~  593 (615)
                           .+.    .......+.+.+..+.+|+.+||+.||++||||+||++.|+.+.+..++++
T Consensus       225 -----~i~----~~~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil~~L~~l~~~p~~l~  278 (283)
T d1mqba_         225 -----AIN----DGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPDSLK  278 (283)
T ss_dssp             -----HHH----TTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGGGGG
T ss_pred             -----HHh----ccCCCCCchhhHHHHHHHHHHHCcCCHhHCcCHHHHHHHHHHHhhCccccc
Confidence                 111    112223445556678999999999999999999999999998887665444

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-42  Score=348.31  Aligned_cols=208  Identities=26%  Similarity=0.421  Sum_probs=169.7

Q ss_pred             ceEEEEEE----CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI----DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~----~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|.+    .++.||||+++         +.+.+|+++|++++|||||+++|+|.+ + ..+|||||+++|+|.+++
T Consensus        21 G~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~-~~~lvmE~~~~g~L~~~l   98 (277)
T d1xbba_          21 GTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-E-SWMLVMEMAELGPLNKYL   98 (277)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-S-SEEEEEECCTTEEHHHHH
T ss_pred             eEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc-C-CEEEEEEcCCCCcHHHHH
Confidence            58999987    24789999985         247899999999999999999999864 3 689999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------  483 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------  483 (615)
                      ....          .++|.+++.++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+++....      
T Consensus        99 ~~~~----------~l~~~~~~~i~~qi~~gl~ylH~~~---iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~  165 (277)
T d1xbba_          99 QQNR----------HVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK  165 (277)
T ss_dssp             HHCT----------TCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEE
T ss_pred             hhcc----------CCCHHHHHHHHHHHHHHHhhHHhCC---cccCCCcchhhcccccCcccccchhhhhhccccccccc
Confidence            8654          3999999999999999999999998   99999999999999999999999999975321      


Q ss_pred             --------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          484 --------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       484 --------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                          .++.++|||||||++|||+| |+.||......+       +..          .+.+-..
T Consensus       166 ~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~-------~~~----------~i~~~~~  228 (277)
T d1xbba_         166 AQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE-------VTA----------MLEKGER  228 (277)
T ss_dssp             C----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH-------HHH----------HHHTTCC
T ss_pred             cccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHHH-------HHH----------HHHcCCC
Confidence                                13458999999999999998 899997543211       111          1111111


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcc
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLT  586 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~  586 (615)
                          ...|...+..+.+|+.+||+.||++||||+||++.|+...
T Consensus       229 ----~~~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~~  268 (277)
T d1xbba_         229 ----MGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYY  268 (277)
T ss_dssp             ----CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred             ----CCCCcccCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhCHH
Confidence                1234445567899999999999999999999999887654

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-42  Score=348.86  Aligned_cols=211  Identities=27%  Similarity=0.387  Sum_probs=171.9

Q ss_pred             ceEEEEEE----CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI----DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~----~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||+|.+    ++..||||+++        +.|.+|+++|++++|||||+++|+|.+  +..++||||+++|+|.+++.
T Consensus        23 g~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~--~~~~lvmE~~~~g~L~~~l~  100 (285)
T d1u59a_          23 GSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA--EALMLVMEMAGGGPLHKFLV  100 (285)
T ss_dssp             EEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES--SSEEEEEECCTTEEHHHHHT
T ss_pred             eEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc--CeEEEEEEeCCCCcHHHHhh
Confidence            58999986    35579999985        357899999999999999999999864  36899999999999999987


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------  483 (615)
                      ....         .++|.+++.++.|+|.||+|||+++   |+||||||+|||++.++.+||+|||+++....       
T Consensus       101 ~~~~---------~l~~~~~~~i~~qi~~gL~ylH~~~---iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~  168 (285)
T d1u59a_         101 GKRE---------EIPVSNVAELLHQVSMGMKYLEEKN---FVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTA  168 (285)
T ss_dssp             TCTT---------TSCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECC
T ss_pred             cccc---------CCCHHHHHHHHHHHHHHHHHHHhCC---eecCcCchhheeeccCCceeeccchhhhccccccccccc
Confidence            6543         3999999999999999999999998   99999999999999999999999999965321       


Q ss_pred             -------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCC
Q 047629          484 -------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDP  543 (615)
Q Consensus       484 -------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp  543 (615)
                                         .++.++|||||||++|||+| |+.||......+.   ..              .+.+-..+
T Consensus       169 ~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~~---~~--------------~i~~~~~~  231 (285)
T d1u59a_         169 RSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEV---MA--------------FIEQGKRM  231 (285)
T ss_dssp             CCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHH---HH--------------HHHTTCCC
T ss_pred             ccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHHHH---HH--------------HHHcCCCC
Confidence                               13568999999999999998 8999976543111   11              11111112


Q ss_pred             cCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          544 NLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       544 ~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                          ..|...+..+.+|+..||+.||++||||.+|++.|+....+
T Consensus       232 ----~~p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~~~~  272 (285)
T d1u59a_         232 ----ECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYS  272 (285)
T ss_dssp             ----CCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ----CCCCcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence                23444556789999999999999999999999999866543

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-41  Score=339.63  Aligned_cols=209  Identities=24%  Similarity=0.404  Sum_probs=172.2

Q ss_pred             ceEEEEEE-CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      |.||+|.+ +++.||||+++      +++.+|++++++++|||||+++|+|.+. +..++||||+++|+|.+++..... 
T Consensus        18 g~Vy~~~~~~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~-~~~~iv~Ey~~~g~l~~~~~~~~~-   95 (258)
T d1k2pa_          18 GVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQ-RPIFIITEYMANGCLLNYLREMRH-   95 (258)
T ss_dssp             EEEEEEEETTTEEEEEEEEESSSSCHHHHHHHHHHHHTCCCTTBCCEEEEECCS-SSEEEEEECCTTEEHHHHHHSGGG-
T ss_pred             eEEEEEEECCCCEEEEEEECcCcCCHHHHHHHHHHHHhcCCCceeeEEEEEeeC-CceEEEEEccCCCcHHHhhhcccc-
Confidence            58999999 67799999986      4689999999999999999999998754 579999999999999999866543 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------------  483 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------------  483 (615)
                              .++|..+.+++.|+++||+|||+++   |+||||||+|||+++++.+||+|||+++....            
T Consensus        96 --------~~~~~~~~~i~~qi~~gl~~LH~~~---iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~t  164 (258)
T d1k2pa_          96 --------RFQTQQLLEMCKDVCEAMEYLESKQ---FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFP  164 (258)
T ss_dssp             --------CCCHHHHHHHHHHHHHHHHHHHHTT---BCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCCCCCSCCC
T ss_pred             --------CCcHHHHHHHHHHHHHHHHHHhhcC---cccccccceeEEEcCCCcEEECcchhheeccCCCceeecccCCC
Confidence                    3899999999999999999999998   99999999999999999999999999964311            


Q ss_pred             ------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          484 ------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       484 ------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  .++.|+|||||||++|||+| |+.||......+       +.          ..+.+...    ...|
T Consensus       165 ~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~-------~~----------~~i~~~~~----~~~p  223 (258)
T d1k2pa_         165 VRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSE-------TA----------EHIAQGLR----LYRP  223 (258)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHH-------HH----------HHHHTTCC----CCCC
T ss_pred             CCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHH-------HH----------HHHHhCCC----CCCc
Confidence                        14568999999999999998 788987554211       11          01111111    1233


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      ......+.+|+.+||+.||++|||++||++.|..+
T Consensus       224 ~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~di  258 (258)
T d1k2pa_         224 HLASEKVYTIMYSCWHEKADERPTFKILLSNILDV  258 (258)
T ss_dssp             TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHCC
T ss_pred             ccccHHHHHHHHHHccCCHhHCcCHHHHHHHhhCC
Confidence            44456789999999999999999999999998653

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-42  Score=345.21  Aligned_cols=213  Identities=25%  Similarity=0.415  Sum_probs=172.3

Q ss_pred             ceEEEEEECCeEEEEEEcc-----HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCCCC
Q 047629          343 KSVYRATIDGKVLAVKKIK-----EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKSSS  417 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~-----~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~~~  417 (615)
                      |.||+|.+.|+.||||+++     +.+.+|+++|++++|||||+++|+|.+.++.+++||||+++|+|.++|.....   
T Consensus        21 g~Vy~~~~~~~~vAvK~i~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~---   97 (262)
T d1byga_          21 GDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGR---   97 (262)
T ss_dssp             CEEEEEEETTEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHH---
T ss_pred             eEEEEEEECCeEEEEEEECcHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEeccCCCCHHHHHHhcCC---
Confidence            5899999999999999996     46889999999999999999999987655568999999999999999975432   


Q ss_pred             CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------------
Q 047629          418 SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------------  482 (615)
Q Consensus       418 ~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------------  482 (615)
                           ..++|..+++|+.||+.||.|||+.+   |+||||||+|||++.++.+|++|||+++...               
T Consensus        98 -----~~l~~~~~~~i~~~i~~al~ylH~~~---ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~~~~~~~~~~y~aP  169 (262)
T d1byga_          98 -----SVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAP  169 (262)
T ss_dssp             -----HHCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTSCEEECCCCC------------CCTTTSCH
T ss_pred             -----CCCCHHHHHHHHHHHHhhccccccCc---eeccccchHhheecCCCCEeecccccceecCCCCccccccccCCCh
Confidence                 24899999999999999999999987   9999999999999999999999999997542               


Q ss_pred             -----CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHH
Q 047629          483 -----NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALS  556 (615)
Q Consensus       483 -----~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~  556 (615)
                           ..+++++|||||||++|||+| |+.|+......+.   .              ..+.+-..+    +.+......
T Consensus       170 E~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~---~--------------~~i~~~~~~----~~~~~~~~~  228 (262)
T d1byga_         170 EALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDV---V--------------PRVEKGYKM----DAPDGCPPA  228 (262)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGH---H--------------HHHTTTCCC----CCCTTCCHH
T ss_pred             HHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHH---H--------------HHHHcCCCC----CCCccCCHH
Confidence                 125679999999999999999 6777665432211   1              112222222    334444567


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHHHHHhccc
Q 047629          557 LATLARACTMDKSLSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       557 l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~  587 (615)
                      +.+|+.+||+.||.+||||.||+++|+.++.
T Consensus       229 ~~~li~~cl~~dP~~Rps~~~l~~~L~~i~~  259 (262)
T d1byga_         229 VYEVMKNCWHLDAAMRPSFLQLREQLEHIKT  259 (262)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccCHhHCcCHHHHHHHHHHHHh
Confidence            8999999999999999999999999988753

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-41  Score=341.14  Aligned_cols=214  Identities=26%  Similarity=0.397  Sum_probs=172.5

Q ss_pred             ceEEEEEE-CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      |.||+|.. +++.||||+++      +.|.+|+.+|++++|+|||+++|+|.+  +..++||||+++|+|.+++......
T Consensus        31 g~Vy~~~~~~~~~vAiK~l~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~--~~~~lv~Ey~~~g~l~~~~~~~~~~  108 (285)
T d1fmka3          31 GEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE--EPIYIVTEYMSKGSLLDFLKGETGK  108 (285)
T ss_dssp             CEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS--SSCEEEECCCTTCBHHHHHSHHHHT
T ss_pred             eEEEEEEECCCCEEEEEEECcccCCHHHHHHHHHHHHhcccCCEeEEEEEEec--CCeEEEEEecCCCchhhhhhhcccc
Confidence            58999998 56789999986      468999999999999999999999853  3689999999999999999764321


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------------  482 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------------  482 (615)
                              .++|.+++.++.||+.||+|||+++   |+||||||+|||+|+++.+||+|||+++...             
T Consensus       109 --------~l~~~~~~~i~~~i~~gl~~LH~~~---ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt  177 (285)
T d1fmka3         109 --------YLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFP  177 (285)
T ss_dssp             --------TCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCCTTC--------------CC
T ss_pred             --------cchHHHHHHHHHHHHHHHHHHhhhh---eecccccceEEEECCCCcEEEcccchhhhccCCCceeecccccc
Confidence                    3999999999999999999999998   9999999999999999999999999997542             


Q ss_pred             -----------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCCh
Q 047629          483 -----------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPI  551 (615)
Q Consensus       483 -----------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~  551 (615)
                                 ..++.++|||||||++|||++|+.|+........  ...              .+..-..    ...+.
T Consensus       178 ~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~--~~~--------------~i~~~~~----~~~~~  237 (285)
T d1fmka3         178 IKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE--VLD--------------QVERGYR----MPCPP  237 (285)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--HHH--------------HHHTTCC----CCCCT
T ss_pred             ccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHH--HHH--------------HHHhcCC----CCCCc
Confidence                       1245689999999999999998777654432111  110              1111111    22344


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          552 DGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       552 ~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      +...++.+++.+||+.||++||||+||++.|+....+.
T Consensus       238 ~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~~~~  275 (285)
T d1fmka3         238 ECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST  275 (285)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCS
T ss_pred             ccCHHHHHHHHHHcccCHhHCcCHHHHHHHHhhhhcCC
Confidence            45567899999999999999999999999998766553

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-41  Score=345.02  Aligned_cols=223  Identities=26%  Similarity=0.405  Sum_probs=175.5

Q ss_pred             ccccccccc--ceEEEEEEC---C--eEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEe
Q 047629          334 NLSEHYSIG--KSVYRATID---G--KVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYE  398 (615)
Q Consensus       334 ~~~~~~~iG--~~Vy~~~~~---g--~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E  398 (615)
                      +|.+..+-|  |.||+|.+.   +  ..||||+++        ++|.+|+++|++++|||||+++|+|.+.++..++|||
T Consensus        30 ~~~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E  109 (311)
T d1r0pa_          30 HFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLP  109 (311)
T ss_dssp             EEEEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEE
T ss_pred             ccceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEE
Confidence            444444444  589999982   2  368999985        3588999999999999999999998876668999999


Q ss_pred             ecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCC
Q 047629          399 YAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA  478 (615)
Q Consensus       399 ~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  478 (615)
                      ||++|+|.+++.....         .+++..+++++.|+|.||.|||+.+   |+||||||+|||+|+++.+||+|||++
T Consensus       110 ~~~~g~l~~~~~~~~~---------~~~~~~~~~i~~qia~gL~~lH~~~---iiHrDLK~~NILl~~~~~~kL~DFG~~  177 (311)
T d1r0pa_         110 YMKHGDLRNFIRNETH---------NPTVKDLIGFGLQVAKGMKFLASKK---FVHRDLAARNCMLDEKFTVKVADFGLA  177 (311)
T ss_dssp             CCTTCBHHHHHHCTTC---------CCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECSSGGG
T ss_pred             EeecCchhhhhccccc---------cchHHHHHHHHHHHHHhhhhhcccC---cccCCccHHhEeECCCCCEEEecccch
Confidence            9999999999986543         3789999999999999999999998   999999999999999999999999999


Q ss_pred             CCCCC---------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHH
Q 047629          479 APATN---------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE  531 (615)
Q Consensus       479 ~~~~~---------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~  531 (615)
                      +....                           .++.++||||||+++|||+||+.|+.........  .   .       
T Consensus       178 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~--~---~-------  245 (311)
T d1r0pa_         178 RDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDI--T---V-------  245 (311)
T ss_dssp             CCTTTTTCCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC------C--H---H-------
T ss_pred             hhccccccccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHH--H---H-------
Confidence            75421                           1456899999999999999988887643321110  0   0       


Q ss_pred             HHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          532 KREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       532 ~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                          .+..-..+    ..|......+.+|+.+||+.||++||+|.||++.|+.+.++
T Consensus       246 ----~i~~g~~~----~~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~L~~i~~~  294 (311)
T d1r0pa_         246 ----YLLQGRRL----LQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFST  294 (311)
T ss_dssp             ----HHHTTCCC----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             ----HHHcCCCC----CCcccCcHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHh
Confidence                01111111    12334445689999999999999999999999999988654

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-40  Score=332.58  Aligned_cols=203  Identities=26%  Similarity=0.377  Sum_probs=167.7

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||+|..  +|+.||||++.+          .+.+|+++|++++|||||++++++.+. +..++||||+++|+|.+++.
T Consensus        20 g~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~-~~~~ivmEy~~~g~L~~~l~   98 (263)
T d2j4za1          20 GNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDA-TRVYLILEYAPLGTVYRELQ   98 (263)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECS-SEEEEEEECCTTCBHHHHHH
T ss_pred             cEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEEC-CEEEEEEeecCCCcHHHHHh
Confidence            48999998  689999999852          367899999999999999999998864 47999999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------  483 (615)
                      ...          .+++.++..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+|+....       
T Consensus        99 ~~~----------~l~e~~~~~i~~qi~~al~~lH~~~---ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~  165 (263)
T d2j4za1          99 KLS----------KFDEQRTATYITELANALSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLC  165 (263)
T ss_dssp             HHS----------SCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCCCEETT
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHHCC---eeeeeeccccceecCCCCEeecccceeeecCCCcccccC
Confidence            644          3899999999999999999999998   99999999999999999999999999975422       


Q ss_pred             --------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          484 --------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       484 --------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                    .++.++|||||||+||||++|+.||......   ....              .+.. .++.    +
T Consensus       166 Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~---~~~~--------------~i~~-~~~~----~  223 (263)
T d2j4za1         166 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQ---ETYK--------------RISR-VEFT----F  223 (263)
T ss_dssp             EEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHH---HHHH--------------HHHT-TCCC----C
T ss_pred             CCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCHH---HHHH--------------HHHc-CCCC----C
Confidence                          2567999999999999999999999654311   1111              0100 1122    2


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      |......+.+|+.+||+.||++|||++|++++
T Consensus       224 p~~~s~~~~~li~~~L~~dp~~R~t~~eil~h  255 (263)
T d2j4za1         224 PDFVTEGARDLISRLLKHNPSQRPMLREVLEH  255 (263)
T ss_dssp             CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred             CccCCHHHHHHHHHHccCCHhHCcCHHHHHcC
Confidence            33344567899999999999999999999863

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-40  Score=335.84  Aligned_cols=206  Identities=23%  Similarity=0.347  Sum_probs=165.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||+|..  +|+.||||+++        +.+.+|+++|++++|||||++++++.+. +..++||||+++|+|.++|...
T Consensus        19 g~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~-~~~~ivmEy~~gg~L~~~l~~~   97 (271)
T d1nvra_          19 GEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREG-NIQYLFLEYCSGGELFDRIEPD   97 (271)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEET-TEEEEEEECCTTEEGGGGSBTT
T ss_pred             eEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccC-ceeEEEEeccCCCcHHHHHhcC
Confidence            58999997  68999999874        2478899999999999999999998764 4799999999999999999754


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                      .          .+++.++..++.|++.||+|||+++   |+||||||+|||+++++++||+|||+|+...          
T Consensus        98 ~----------~l~e~~~~~i~~qi~~al~ylH~~~---IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~  164 (271)
T d1nvra_          98 I----------GMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK  164 (271)
T ss_dssp             T----------BCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCBCC
T ss_pred             C----------CCCHHHHHHHHHHHHHHHHHHHHcC---CccCcccHHHEEECCCCCEEEccchhheeeccCCccccccc
Confidence            3          3899999999999999999999998   9999999999999999999999999996431          


Q ss_pred             ---------------CC-CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          483 ---------------ND-VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ---------------~~-~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                     .. .+.++|||||||++|||++|+.||....+.....  ..                 .......
T Consensus       165 ~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~--~~-----------------~~~~~~~  225 (271)
T d1nvra_         165 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY--SD-----------------WKEKKTY  225 (271)
T ss_dssp             CCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHH--HH-----------------HHTTCTT
T ss_pred             eeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHH--HH-----------------HhcCCCC
Confidence                           01 2347899999999999999999997654322111  00                 0000000


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..........+.+|+.+||+.||++|||++|++++
T Consensus       226 ~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~h  260 (271)
T d1nvra_         226 LNPWKKIDSAPLALLHKILVENPSARITIPDIKKD  260 (271)
T ss_dssp             STTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             CCccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            11112233457899999999999999999998753

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.8e-41  Score=342.42  Aligned_cols=230  Identities=28%  Similarity=0.390  Sum_probs=176.2

Q ss_pred             cccccccccc----ceEEEEEEC-------CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcE
Q 047629          333 MNLSEHYSIG----KSVYRATID-------GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNR  393 (615)
Q Consensus       333 ~~~~~~~~iG----~~Vy~~~~~-------g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~  393 (615)
                      ++|.....||    |.||+|.+.       ++.||||+++        +++.+|+++|++++||||++++++|.+. +..
T Consensus        13 ~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~-~~~   91 (301)
T d1lufa_          13 NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVG-KPM   91 (301)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS-SSC
T ss_pred             HHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeeccC-Cce
Confidence            4454444555    589999873       4789999985        3588999999999999999999998754 479


Q ss_pred             EEEEeecCCCCHHHhhccCCCCCC--------------CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCC
Q 047629          394 FLVYEYAENGSLDKWLHPKSKSSS--------------SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRT  459 (615)
Q Consensus       394 ~lV~E~~~~GsL~~~L~~~~~~~~--------------~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~  459 (615)
                      +++|||+++|+|.++|........              .......++|.+++.|+.|++.||+|||+++   ++||||||
T Consensus        92 ~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~---ivHrDlKp  168 (301)
T d1lufa_          92 CLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK---FVHRDLAT  168 (301)
T ss_dssp             EEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSG
T ss_pred             EEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCC---eEeeEEcc
Confidence            999999999999999975432110              0011124899999999999999999999998   99999999


Q ss_pred             CceeeCCCCcEEEeecCCCCCCC-------------------------CCCCCcccchhHHHHHHHHHcCCC-CCCCCCC
Q 047629          460 NNIQLDSRFKAKIANFSLAAPAT-------------------------NDVMPKFDVFAFGVVLLELLSGKK-ATRTTEN  513 (615)
Q Consensus       460 ~NILld~~~~~kl~DFGla~~~~-------------------------~~~~~k~DV~SfGvvl~ElltG~~-p~~~~~~  513 (615)
                      +|||+|.++.+||+|||+|+...                         ..++.++|||||||++|||++|.. |+.....
T Consensus       169 ~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~  248 (301)
T d1lufa_         169 RNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAH  248 (301)
T ss_dssp             GGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH
T ss_pred             cceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCCH
Confidence            99999999999999999985321                         125679999999999999999864 5654332


Q ss_pred             ChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhccc
Q 047629          514 GKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       514 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~  587 (615)
                      .+   ..              ..+.+--.+    ..+.+.+..+.+|+.+||+.||++||||.||++.|+++.+
T Consensus       249 ~e---~~--------------~~v~~~~~~----~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev~~~L~~i~~  301 (301)
T d1lufa_         249 EE---VI--------------YYVRDGNIL----ACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCE  301 (301)
T ss_dssp             HH---HH--------------HHHHTTCCC----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             HH---HH--------------HHHHcCCCC----CCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence            11   00              011111112    2344445578999999999999999999999999998753

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-40  Score=343.30  Aligned_cols=217  Identities=27%  Similarity=0.422  Sum_probs=169.7

Q ss_pred             ceEEEEEEC--C-----eEEEEEEcc--------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATID--G-----KVLAVKKIK--------EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~~--g-----~~vAvK~~~--------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      |.||+|...  +     ..||||.+.        ..+.+|+.+|.++ +|||||+++|++.+. +..++||||+++|+|.
T Consensus        51 G~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~-~~~~lv~Ey~~~g~L~  129 (325)
T d1rjba_          51 GKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLS-GPIYLIFEYCCYGDLL  129 (325)
T ss_dssp             EEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS-SSCEEEEECCTTCBHH
T ss_pred             eEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeC-CeEEEEEEcCCCCcHH
Confidence            589999872  2     369999884        3477899999998 899999999998754 4799999999999999


Q ss_pred             HhhccCCCCCCC-------------CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEe
Q 047629          407 KWLHPKSKSSSS-------------SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIA  473 (615)
Q Consensus       407 ~~L~~~~~~~~~-------------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~  473 (615)
                      ++|+........             ......++|..++.++.||+.||+|||+++   |+||||||+|||++.++.+||+
T Consensus       130 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~---IiHRDlKp~Nill~~~~~~Kl~  206 (325)
T d1rjba_         130 NYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKS---CVHRDLAARNVLVTHGKVVKIC  206 (325)
T ss_dssp             HHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTT---EEETTCSGGGEEEETTTEEEEC
T ss_pred             HHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCchhccccccCCeEEEe
Confidence            999765421000             001124899999999999999999999998   9999999999999999999999


Q ss_pred             ecCCCCCCC-------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHH
Q 047629          474 NFSLAAPAT-------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVL  527 (615)
Q Consensus       474 DFGla~~~~-------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~  527 (615)
                      |||+|+...                         ..++.++|||||||+||||+| |+.||........  +..    . 
T Consensus       207 DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~~~--~~~----~-  279 (325)
T d1rjba_         207 DFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDAN--FYK----L-  279 (325)
T ss_dssp             CCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH--HHH----H-
T ss_pred             eccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCHHHH--HHH----H-
Confidence            999996531                         124668999999999999998 8999976543221  111    1 


Q ss_pred             hHHHHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 047629          528 KVEEKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLS  583 (615)
Q Consensus       528 ~~~~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~  583 (615)
                               +..-..    .+.|......+.+|+.+||+.||++||||+||+++|.
T Consensus       280 ---------~~~~~~----~~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~  322 (325)
T d1rjba_         280 ---------IQNGFK----MDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLG  322 (325)
T ss_dssp             ---------HHTTCC----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             ---------HhcCCC----CCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHh
Confidence                     111111    2234445567899999999999999999999999985

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-40  Score=333.45  Aligned_cols=215  Identities=20%  Similarity=0.367  Sum_probs=167.8

Q ss_pred             cccccc--ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcC---CCcEEEEEeec
Q 047629          337 EHYSIG--KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDS---QGNRFLVYEYA  400 (615)
Q Consensus       337 ~~~~iG--~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~---~~~~~lV~E~~  400 (615)
                      ++.+-|  |.||+|..  +|+.||+|+++         +.+.+|+++|++++|||||++++++.+.   +..+++||||+
T Consensus        15 ~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivmE~~   94 (270)
T d1t4ha_          15 IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELM   94 (270)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEECC
T ss_pred             eEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEEeCC
Confidence            333444  58999998  68899999875         2477899999999999999999997642   23479999999


Q ss_pred             CCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeC-CCCcEEEeecCCCC
Q 047629          401 ENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD-SRFKAKIANFSLAA  479 (615)
Q Consensus       401 ~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld-~~~~~kl~DFGla~  479 (615)
                      ++|+|.+++....          .+++..+..++.||+.||+|||+++ ++|+||||||+|||++ +++.+||+|||+|+
T Consensus        95 ~~g~L~~~l~~~~----------~~~~~~~~~~~~qi~~gl~yLH~~~-~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~  163 (270)
T d1t4ha_          95 TSGTLKTYLKRFK----------VMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLAT  163 (270)
T ss_dssp             CSCBHHHHHHHHS----------SCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCSCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred             CCCcHHHHHhccc----------cccHHHHHHHHHHHHHHHHHHHHCC-CCEEeCCcChhhceeeCCCCCEEEeecCcce
Confidence            9999999997653          3899999999999999999999975 4599999999999996 57899999999996


Q ss_pred             CCC--------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhh
Q 047629          480 PAT--------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRN  539 (615)
Q Consensus       480 ~~~--------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  539 (615)
                      ...                    ..++.++|||||||++|||++|+.||....+...  +..              .+..
T Consensus       164 ~~~~~~~~~~~GT~~Y~aPE~~~~~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~~--~~~--------------~i~~  227 (270)
T d1t4ha_         164 LKRASFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQ--IYR--------------RVTS  227 (270)
T ss_dssp             GCCTTSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHH--HHH--------------HHTT
T ss_pred             eccCCccCCcccCccccCHHHhCCCCCCcCchhhHHHHHHHHHHCCCCCCCcccHHH--HHH--------------HHHc
Confidence            532                    1256789999999999999999999975432111  110              1111


Q ss_pred             hcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          540 WMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       540 ~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ...|.   .++.....++.+|+.+||+.||++|||+.|++++
T Consensus       228 ~~~~~---~~~~~~~~~~~~li~~~l~~dp~~R~s~~ell~H  266 (270)
T d1t4ha_         228 GVKPA---SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNH  266 (270)
T ss_dssp             TCCCG---GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             CCCCc---ccCccCCHHHHHHHHHHccCCHhHCcCHHHHhCC
Confidence            11111   1122233457899999999999999999999763

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-39  Score=331.21  Aligned_cols=205  Identities=21%  Similarity=0.360  Sum_probs=167.4

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||+|..  +|+.||||+++       +.+.+|+++|++++|||||++++++.+.+ ..++||||+++|+|.+++... 
T Consensus        34 g~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~-~~~ivmEy~~gg~L~~~~~~~-  111 (293)
T d1yhwa1          34 GTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGD-ELWVVMEYLAGGSLTDVVTET-  111 (293)
T ss_dssp             CEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETT-EEEEEEECCTTCBHHHHHHHS-
T ss_pred             cEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECC-EEEEEEEecCCCcHHHHhhcc-
Confidence            58999996  69999999885       34789999999999999999999987654 799999999999999988653 


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----------  482 (615)
                                .+++.++..++.||+.||+|||+++   |+||||||+|||++.++++||+|||+|+...           
T Consensus       112 ----------~l~~~~~~~i~~qi~~aL~yLH~~~---iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~~~~~~g  178 (293)
T d1yhwa1         112 ----------CMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVG  178 (293)
T ss_dssp             ----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCS
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHHCC---CcccCCcHHHeEECCCCcEeeccchhheeecccccccccccc
Confidence                      2899999999999999999999998   9999999999999999999999999996531           


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  ..++.++|||||||++|||++|+.||......+  .+    ...          .. .-.+.+  ..+
T Consensus       179 t~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~--~~----~~~----------~~-~~~~~~--~~~  239 (293)
T d1yhwa1         179 TPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLR--AL----YLI----------AT-NGTPEL--QNP  239 (293)
T ss_dssp             CGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH--HH----HHH----------HH-HCSCCC--SSG
T ss_pred             CCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHH--HH----HHH----------Hh-CCCCCC--CCc
Confidence                        125679999999999999999999997543211  11    100          00 011111  223


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ......+.+|+.+||+.||++|||+.|++++
T Consensus       240 ~~~s~~~~~li~~~L~~dP~~R~s~~eil~H  270 (293)
T d1yhwa1         240 EKLSAIFRDFLNRCLDMDVEKRGSAKELLQH  270 (293)
T ss_dssp             GGSCHHHHHHHHHHTCSSTTTSCCHHHHTTC
T ss_pred             ccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            3445568899999999999999999999864

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-41  Score=342.77  Aligned_cols=234  Identities=24%  Similarity=0.360  Sum_probs=173.1

Q ss_pred             ceEEEEEECCeEEEEEEccH----HHHHHHH--HHHhcCCCCcccEEEEEEcCCC---cEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATIDGKVLAVKKIKE----DVTEELR--ILQRINHANLVKLMGVSSDSQG---NRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~~----~~~~Ei~--~l~~l~H~niv~l~g~~~~~~~---~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||+|+++|+.||||+++.    ++..|.+  .+.+++|||||+++|+|.+.++   .+++|||||++|+|.++|+.. 
T Consensus        17 g~Vy~~~~~g~~vAvK~~~~~~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~-   95 (303)
T d1vjya_          17 GEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY-   95 (303)
T ss_dssp             SEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHC-
T ss_pred             eEEEEEEECCEEEEEEEECccchhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEecccCCCHHHHHhcC-
Confidence            48999999999999999863    3334444  4567899999999999975442   478999999999999999764 


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCC-----CCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC----
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA-----QPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND----  484 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~-----~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~----  484 (615)
                                .++|.++++++.|+|.||+|||+..     .++|+||||||+|||++.++.+||+|||+++.....    
T Consensus        96 ----------~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~~~  165 (303)
T d1vjya_          96 ----------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTI  165 (303)
T ss_dssp             ----------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEE
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccccccCCCcce
Confidence                      2899999999999999999999741     345999999999999999999999999998643110    


Q ss_pred             -----------------------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHH
Q 047629          485 -----------------------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREE  535 (615)
Q Consensus       485 -----------------------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~  535 (615)
                                                   ++.|+|||||||+||||+||+.|+........... ...............
T Consensus       166 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  244 (303)
T d1vjya_         166 DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYY-DLVPSDPSVEEMRKV  244 (303)
T ss_dssp             CC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTT-TTSCSSCCHHHHHHH
T ss_pred             eccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchh-hcccccchHHHHHHH
Confidence                                         23478999999999999999988754332111000 000000000011122


Q ss_pred             HHhhhcCCcCCCCCC-hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          536 RLRNWMDPNLESFYP-IDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       536 ~~~~~~dp~l~~~~~-~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                      ...+.++|.+...+. .+....+.+|+.+||+.||++||||.||++.|+++.+.
T Consensus       245 ~~~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~  298 (303)
T d1vjya_         245 VCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             HTTSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HhccccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHh
Confidence            233344555543332 34566799999999999999999999999999988754

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-41  Score=336.92  Aligned_cols=211  Identities=23%  Similarity=0.340  Sum_probs=159.1

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcC-CCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDS-QGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~-~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||+|..  +|+.||||.++         +.+.+|+++|++++|||||++++++.+. ++.+++||||+++|+|.+++.
T Consensus        18 g~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~ivmEy~~~g~L~~~i~   97 (269)
T d2java1          18 GRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVIT   97 (269)
T ss_dssp             EEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEEEECCTTEEHHHHHH
T ss_pred             eEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEEEecCCCCcHHHHHH
Confidence            48999987  68999999874         2377899999999999999999998753 345899999999999999986


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCC--CCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHA--QPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~--~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~------  482 (615)
                      ......      ..+++..++.++.|++.||+|||+++  ..+|+||||||+|||++.++.+||+|||+|+...      
T Consensus        98 ~~~~~~------~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~  171 (269)
T d2java1          98 KGTKER------QYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFA  171 (269)
T ss_dssp             HHHHHT------CCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHHC-------
T ss_pred             hccccC------CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceeecccCCCcc
Confidence            532110      13999999999999999999999864  2359999999999999999999999999985431      


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                       ..++.++|||||||++|||++|+.||......   .+..              .+.+.--+.+
T Consensus       172 ~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~---~~~~--------------~i~~~~~~~~  234 (269)
T d2java1         172 KAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK---ELAG--------------KIREGKFRRI  234 (269)
T ss_dssp             ----CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH---HHHH--------------HHHHTCCCCC
T ss_pred             ccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHH---HHHH--------------HHHcCCCCCC
Confidence                             22567999999999999999999999754321   1110              1111111122


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVF  580 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~  580 (615)
                          +......+.+|+.+||+.||++|||+.|+++
T Consensus       235 ----~~~~s~~l~~li~~~L~~dp~~Rps~~ell~  265 (269)
T d2java1         235 ----PYRYSDELNEIITRMLNLKDYHRPSVEEILE  265 (269)
T ss_dssp             ----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ----CcccCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence                2333446889999999999999999999975

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-39  Score=331.76  Aligned_cols=207  Identities=24%  Similarity=0.343  Sum_probs=168.5

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||+|..  +|+.||||+++       +.+.+|+++|++++|||||++++++.+. +..++||||+++|+|.+++....
T Consensus        26 g~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-~~~~lvmEy~~~g~L~~~~~~~~  104 (288)
T d2jfla1          26 GKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYE-NNLWILIEFCAGGAVDAVMLELE  104 (288)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEET-TEEEEEEECCTTEEHHHHHHHHT
T ss_pred             cEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeC-CeEEEEEecCCCCcHHHHHHhcC
Confidence            58999997  68999999985       3578999999999999999999998764 47999999999999999986543


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCC------------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA------------  481 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~------------  481 (615)
                      .         .+++.++..++.||+.||.|||+++   |+||||||+|||++.++++||+|||+|+..            
T Consensus       105 ~---------~l~e~~~~~i~~qi~~gL~ylH~~~---ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~~~~~~~G  172 (288)
T d2jfla1         105 R---------PLTESQIQVVCKQTLDALNYLHDNK---IIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIG  172 (288)
T ss_dssp             S---------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECHHHHHHHTCCCS
T ss_pred             C---------CCCHHHHHHHHHHHHHHHHHHHHCC---EEEeecChhheeECCCCCEEEEechhhhccCCCccccccccc
Confidence            2         3999999999999999999999998   999999999999999999999999998532            


Q ss_pred             ----------------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          482 ----------------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       482 ----------------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                      ...++.++|||||||++|||++|+.||......+..      ..           +...-.+.+
T Consensus       173 t~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~~~------~~-----------i~~~~~~~~  235 (288)
T d2jfla1         173 TPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVL------LK-----------IAKSEPPTL  235 (288)
T ss_dssp             CCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHH------HH-----------HHHSCCCCC
T ss_pred             ccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHHHH------HH-----------HHcCCCCCC
Confidence                            112467899999999999999999999765432211      00           011011111


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                        ..+......+.+|+.+||+.||++|||+.|++++
T Consensus       236 --~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~h  269 (288)
T d2jfla1         236 --AQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQH  269 (288)
T ss_dssp             --SSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             --CccccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence              2233445568999999999999999999999764

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-40  Score=331.93  Aligned_cols=209  Identities=26%  Similarity=0.351  Sum_probs=166.3

Q ss_pred             ceEEEEEEC---C--eEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATID---G--KVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~~---g--~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||+|.++   +  ..||||+++          ++|.+|+++|++++|||||+++|+|.+  +..++||||+++|+|.+
T Consensus        22 g~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~--~~~~lv~e~~~~~~l~~   99 (273)
T d1u46a_          22 GVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT--PPMKMVTELAPLGSLLD   99 (273)
T ss_dssp             CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS--SSCEEEEECCTTCBHHH
T ss_pred             eEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee--cchheeeeeecCcchhh
Confidence            589999872   2  478999885          247899999999999999999999864  36789999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCC---
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATND---  484 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~---  484 (615)
                      ++.....         .++|..+++++.|+|.||.|||+++   |+||||||+|||++.++.+||+|||+++.....   
T Consensus       100 ~~~~~~~---------~l~~~~~~~~~~qi~~gl~ylH~~~---iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~~~  167 (273)
T d1u46a_         100 RLRKHQG---------HFLLGTLSRYAVQVAEGMGYLESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDH  167 (273)
T ss_dssp             HHHHHGG---------GSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCE
T ss_pred             hhhcccC---------CCCHHHHHHHHHHHHHHHHHhhhCC---EeeeeecHHHhccccccceeeccchhhhhcccCCCc
Confidence            8876443         4999999999999999999999998   999999999999999999999999999754211   


Q ss_pred             -----------------------CCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhh
Q 047629          485 -----------------------VMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNW  540 (615)
Q Consensus       485 -----------------------~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  540 (615)
                                             ++.++|||||||++|||+| |+.||......+.                    +..+
T Consensus       168 ~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~~--------------------~~~i  227 (273)
T d1u46a_         168 YVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQI--------------------LHKI  227 (273)
T ss_dssp             EEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHH--------------------HHHH
T ss_pred             ceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHHHH--------------------HHHH
Confidence                                   3457999999999999998 8999875432110                    0011


Q ss_pred             cCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhc
Q 047629          541 MDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVL  585 (615)
Q Consensus       541 ~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l  585 (615)
                      .......+.+...+..+.+|+..||+.||++||||.||++.|.+.
T Consensus       228 ~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         228 DKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             HTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HhCCCCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence            111111122334445689999999999999999999999988764

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.1e-40  Score=337.24  Aligned_cols=213  Identities=24%  Similarity=0.363  Sum_probs=169.9

Q ss_pred             cccccccc----ceEEEEEE--CCeEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEe
Q 047629          335 LSEHYSIG----KSVYRATI--DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYE  398 (615)
Q Consensus       335 ~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E  398 (615)
                      |.....+|    |.||+|..  +|+.||||+++          +.+.+|+++|++++|||||++++++.+. +..++|||
T Consensus        17 y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~-~~~~iv~E   95 (309)
T d1u5ra_          17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLRE-HTAWLVME   95 (309)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEET-TEEEEEEE
T ss_pred             cEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEEC-CEEEEEEE
Confidence            44444454    58999997  78999999884          2477899999999999999999998764 47999999


Q ss_pred             ecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCC
Q 047629          399 YAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA  478 (615)
Q Consensus       399 ~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  478 (615)
                      ||++|+|..++....          .+++.++..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+|
T Consensus        96 ~~~~g~l~~~~~~~~----------~l~e~~~~~i~~qi~~aL~yLH~~~---iiHrDiKp~NILl~~~~~~Kl~DFG~a  162 (309)
T d1u5ra_          96 YCLGSASDLLEVHKK----------PLQEVEIAAVTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSA  162 (309)
T ss_dssp             CCSEEHHHHHHHHTS----------CCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEEETTTEEEECCCTTC
T ss_pred             ecCCCchHHHHHhCC----------CCCHHHHHHHHHHHHHHHHHHHhCC---EeccCCCcceEEECCCCCEEEeecccc
Confidence            999999987776543          3899999999999999999999998   999999999999999999999999999


Q ss_pred             CCCC----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHH
Q 047629          479 APAT----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREER  536 (615)
Q Consensus       479 ~~~~----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  536 (615)
                      +...                      ..++.++|||||||++|||++|+.||......+  .    +..           
T Consensus       163 ~~~~~~~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~--~----~~~-----------  225 (309)
T d1u5ra_         163 SIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS--A----LYH-----------  225 (309)
T ss_dssp             BSSSSBCCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH--H----HHH-----------
T ss_pred             cccCCCCccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHHH--H----HHH-----------
Confidence            6532                      125678999999999999999999997543211  0    111           


Q ss_pred             HhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          537 LRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       537 ~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +...-.+.+.   +......+.+|+.+||+.||++|||+.|++++
T Consensus       226 i~~~~~~~~~---~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~H  267 (309)
T d1u5ra_         226 IAQNESPALQ---SGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH  267 (309)
T ss_dssp             HHHSCCCCCS---CTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred             HHhCCCCCCC---CCCCCHHHHHHHHHHCcCChhHCcCHHHHHhC
Confidence            1111122221   12233467899999999999999999999873

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-39  Score=335.99  Aligned_cols=222  Identities=29%  Similarity=0.476  Sum_probs=172.1

Q ss_pred             ceEEEEEE--CCe--EEEEEEcc--------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGK--VLAVKKIK--------EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~--~vAvK~~~--------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|.+  +|.  .||||+++        +++.+|+++|+++ +|||||+++|+|.+. +..++||||+++|+|.++|
T Consensus        24 g~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~-~~~~iV~ey~~~g~L~~~l  102 (309)
T d1fvra_          24 GQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHR-GYLYLAIEYAPHGNLLDFL  102 (309)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEET-TEEEEEECCCTTCBHHHHH
T ss_pred             cEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecC-CeeEEEEEecCCCcHHHHH
Confidence            58999998  454  57888874        2578999999999 799999999999864 4899999999999999999


Q ss_pred             ccCCCCCC------CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-
Q 047629          410 HPKSKSSS------SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-  482 (615)
Q Consensus       410 ~~~~~~~~------~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-  482 (615)
                      +.......      .......|+|.++++++.|||.||.|||+++   |+||||||+|||++.++.+||+|||+++... 
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~---iiHrDlkp~NIL~~~~~~~kl~DfG~a~~~~~  179 (309)
T d1fvra_         103 RKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVGENYVAKIADFGLSRGQEV  179 (309)
T ss_dssp             HTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECGGGCEEECCTTCEESSCE
T ss_pred             hhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCC---ccccccccceEEEcCCCceEEccccccccccc
Confidence            76421000      0001124999999999999999999999998   9999999999999999999999999986532 


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCC-CCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhh
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKK-ATRTTENGKTAVLWKEIREVLKVEEKREERLRNW  540 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~-p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  540 (615)
                                           ..++.++|||||||++|||++|.. |+.....   ..+.              ..+.+.
T Consensus       180 ~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~---~~~~--------------~~i~~~  242 (309)
T d1fvra_         180 YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC---AELY--------------EKLPQG  242 (309)
T ss_dssp             ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCH---HHHH--------------HHGGGT
T ss_pred             cccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCCH---HHHH--------------HHHHhc
Confidence                                 114568999999999999999775 5543221   1110              112221


Q ss_pred             cCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          541 MDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       541 ~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      ..+    ..+......+.+|+.+||+.||++||||+||++.|+++.+..
T Consensus       243 ~~~----~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~L~~i~~~~  287 (309)
T d1fvra_         243 YRL----EKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEER  287 (309)
T ss_dssp             CCC----CCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred             CCC----CCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcC
Confidence            222    234445567899999999999999999999999999887543

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-40  Score=331.09  Aligned_cols=211  Identities=24%  Similarity=0.375  Sum_probs=166.0

Q ss_pred             ceEEEEEEC-----CeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATID-----GKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~~-----g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|.+.     +..||||+++        +.+.+|+++|++++|||||+++|++.+  +..++||||+++|+|.+++
T Consensus        21 g~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~--~~~~iv~E~~~~g~l~~~~   98 (273)
T d1mp8a_          21 GDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE--NPVWIIMELCTLGELRSFL   98 (273)
T ss_dssp             SEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS--SSCEEEEECCTTEEHHHHH
T ss_pred             cEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec--CeEEEEEEeccCCcHHhhh
Confidence            589999872     3569999885        347899999999999999999999853  4789999999999999998


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN------  483 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~------  483 (615)
                      .....         .+++.+++.++.||+.||+|||+++   |+||||||+||+++.++.+||+|||+|+....      
T Consensus        99 ~~~~~---------~l~~~~~~~~~~qi~~gl~ylH~~~---iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~~~~  166 (273)
T d1mp8a_          99 QVRKY---------SLDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKA  166 (273)
T ss_dssp             HHTTT---------TSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECC---------------
T ss_pred             hccCC---------CCCHHHHHHHHHHHHHHhhhhcccC---eeccccchhheeecCCCcEEEccchhheeccCCcceec
Confidence            76543         3899999999999999999999998   99999999999999999999999999975421      


Q ss_pred             ------------------CCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCc
Q 047629          484 ------------------DVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPN  544 (615)
Q Consensus       484 ------------------~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~  544 (615)
                                        .++.++|||||||++|||++ |+.|+......+.   ..              .+.....+ 
T Consensus       167 ~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~---~~--------------~i~~~~~~-  228 (273)
T d1mp8a_         167 SKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDV---IG--------------RIENGERL-  228 (273)
T ss_dssp             ----CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH---HH--------------HHHTTCCC-
T ss_pred             cceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHHH---HH--------------HHHcCCCC-
Confidence                              24568999999999999998 8888876543221   11              11111111 


Q ss_pred             CCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          545 LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       545 l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                         ..+...+..+.+|+..||+.||++|||+.||++.|+.+.+.
T Consensus       229 ---~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~  269 (273)
T d1mp8a_         229 ---PMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE  269 (273)
T ss_dssp             ---CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ---CCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence               23344556789999999999999999999999999987654

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-40  Score=338.13  Aligned_cols=219  Identities=20%  Similarity=0.381  Sum_probs=173.5

Q ss_pred             cccccccc----ceEEEEEE--CCe----EEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEE
Q 047629          335 LSEHYSIG----KSVYRATI--DGK----VLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLV  396 (615)
Q Consensus       335 ~~~~~~iG----~~Vy~~~~--~g~----~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV  396 (615)
                      |.....+|    |.||+|.+  +|+    .||||+++        +.+.+|+++|++++|||||+++|+|.+  +..+++
T Consensus        11 y~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~--~~~~~v   88 (317)
T d1xkka_          11 FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT--STVQLI   88 (317)
T ss_dssp             EEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEES--SSEEEE
T ss_pred             CEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec--CCeeEE
Confidence            34344454    58999987  443    68999875        358899999999999999999999975  367899


Q ss_pred             EeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecC
Q 047629          397 YEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFS  476 (615)
Q Consensus       397 ~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  476 (615)
                      +||+.+|+|.+++.....         .++|..+++++.|||.||+|||+++   |+||||||+|||++.++.+||+|||
T Consensus        89 ~e~~~~~~l~~~~~~~~~---------~~~~~~~~~i~~qi~~gl~yLH~~~---iiHrDlKp~NIll~~~~~~kl~DFG  156 (317)
T d1xkka_          89 TQLMPFGCLLDYVREHKD---------NIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFG  156 (317)
T ss_dssp             EECCTTCBHHHHHHHTSS---------SCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEETTEEEECCCS
T ss_pred             EEeccCCccccccccccc---------CCCHHHHHHHHHHHHHHHHHHHHcC---cccCcchhhcceeCCCCCeEeeccc
Confidence            999999999999876543         3899999999999999999999998   9999999999999999999999999


Q ss_pred             CCCCCC-------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHH
Q 047629          477 LAAPAT-------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVE  530 (615)
Q Consensus       477 la~~~~-------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~  530 (615)
                      +|+...                         ..++.++|||||||++|||+| |+.|+......+.   ..    .    
T Consensus       157 la~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~---~~----~----  225 (317)
T d1xkka_         157 LAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI---SS----I----  225 (317)
T ss_dssp             HHHHTTTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGH---HH----H----
T ss_pred             cceecccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHH---HH----H----
Confidence            986431                         124678999999999999999 7888865443221   11    1    


Q ss_pred             HHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          531 EKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       531 ~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                            +..-..    ...|..+...+.+|+.+||+.||++||||+||++.|..+...
T Consensus       226 ------i~~~~~----~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~l~~~~~~  273 (317)
T d1xkka_         226 ------LEKGER----LPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD  273 (317)
T ss_dssp             ------HHHTCC----CCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             ------HHcCCC----CCCCcccCHHHHHHHHHhCCCChhhCcCHHHHHHHHHHHHhC
Confidence                  111111    123445556789999999999999999999999999877544

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-39  Score=337.42  Aligned_cols=232  Identities=21%  Similarity=0.360  Sum_probs=172.4

Q ss_pred             cccccccccc----ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEe
Q 047629          333 MNLSEHYSIG----KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYE  398 (615)
Q Consensus       333 ~~~~~~~~iG----~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E  398 (615)
                      ++|.....+|    |.||+|..  +|+.||+|+++        ..+.+|+.+|++++|||||++++++.+. +..++|||
T Consensus         6 d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~-~~~~iVmE   84 (322)
T d1s9ja_           6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD-GEISICME   84 (322)
T ss_dssp             GGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECS-SEEEEEEE
T ss_pred             cCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC-CEEEEEEE
Confidence            3444444555    58999997  68999999985        3478899999999999999999999864 47999999


Q ss_pred             ecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhC-CCCCeEecCCCCCceeeCCCCcEEEeecCC
Q 047629          399 YAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEH-AQPSIVHRDIRTNNIQLDSRFKAKIANFSL  477 (615)
Q Consensus       399 ~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~-~~~~ivHrDlk~~NILld~~~~~kl~DFGl  477 (615)
                      |+++|+|.+++.+..          .+++..+..++.|++.||.|||++ +   |+||||||+|||++.++++||+|||+
T Consensus        85 y~~gg~L~~~l~~~~----------~l~~~~~~~~~~qil~aL~yLH~~~~---IiHRDiKP~NILl~~~~~vkl~DFGl  151 (322)
T d1s9ja_          85 HMDGGSLDQVLKKAG----------RIPEQILGKVSIAVIKGLTYLREKHK---IMHRDVKPSNILVNSRGEIKLCDFGV  151 (322)
T ss_dssp             CCTTEEHHHHHHHHS----------SCCHHHHHHHHHHHHHHHHHHHHHHC---CCCSCCSGGGEEECTTCCEEECCCCC
T ss_pred             cCCCCcHHHHHhhcC----------CCCHHHHHHHHHHHHHHHHHHHHhCC---EEccccCHHHeeECCCCCEEEeeCCC
Confidence            999999999997654          289999999999999999999974 6   99999999999999999999999999


Q ss_pred             CCCC---------------------CCCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHH-HHHHHHhHH-----
Q 047629          478 AAPA---------------------TNDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWK-EIREVLKVE-----  530 (615)
Q Consensus       478 a~~~---------------------~~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~-~~~~~~~~~-----  530 (615)
                      |+..                     ...++.++||||+||++|||++|+.||......+...... .........     
T Consensus       152 a~~~~~~~~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (322)
T d1s9ja_         152 SGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPR  231 (322)
T ss_dssp             CHHHHHHTC---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC----------------
T ss_pred             ccccCCCccccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCcccc
Confidence            9532                     1236789999999999999999999997654332211100 000000000     


Q ss_pred             -------------------HHHHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          531 -------------------EKREERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       531 -------------------~~~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                                         ............|.+..   .....++.+|+.+|++.||++|||++|++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~dli~~~L~~dP~~R~ta~e~L~H  298 (322)
T d1s9ja_         232 TPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPS---GVFSLEFQDFVNKCLIKNPAERADLKQLMVH  298 (322)
T ss_dssp             --------------CCCCHHHHHHHHHTSCCCCCCB---TTBCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             cccccccccccccccchhHHHHHhhhhccCCccCcc---ccCCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence                               00000000001111111   1123457899999999999999999999885

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-39  Score=331.94  Aligned_cols=223  Identities=26%  Similarity=0.386  Sum_probs=164.5

Q ss_pred             ceEEEEEE-------CCeEEEEEEccH--------HHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI-------DGKVLAVKKIKE--------DVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~-------~g~~vAvK~~~~--------~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      |.||+|..       +++.||||+++.        .+.+|..++.++ +|+|||++++++.+.+...++||||+++|+|.
T Consensus        27 G~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~~iv~E~~~~g~L~  106 (299)
T d1ywna1          27 GQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLS  106 (299)
T ss_dssp             CEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEEEECCTTCBHH
T ss_pred             eEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCCeEEEEEEecCCCcHH
Confidence            58999986       247899999863        356788888877 78999999999876665789999999999999


Q ss_pred             HhhccCCCCCCC------CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCC
Q 047629          407 KWLHPKSKSSSS------SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAP  480 (615)
Q Consensus       407 ~~L~~~~~~~~~------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~  480 (615)
                      ++|+........      ......++|.+++.++.||+.||+|||+++   |+||||||+|||+++++.+||+|||+|+.
T Consensus       107 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~---ivHrDlKp~NILl~~~~~~Kl~DFGla~~  183 (299)
T d1ywna1         107 TYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILLSEKNVVKICDFGLARD  183 (299)
T ss_dssp             HHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECGGGCEEECC------
T ss_pred             HHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCC---CcCCcCCccceeECCCCcEEEccCcchhh
Confidence            999764321000      001124899999999999999999999998   99999999999999999999999999964


Q ss_pred             CCC-------------------------CCCCcccchhHHHHHHHHHcCC-CCCCCCCCChhHHHHHHHHHHHhHHHHHH
Q 047629          481 ATN-------------------------DVMPKFDVFAFGVVLLELLSGK-KATRTTENGKTAVLWKEIREVLKVEEKRE  534 (615)
Q Consensus       481 ~~~-------------------------~~~~k~DV~SfGvvl~ElltG~-~p~~~~~~~~~~~l~~~~~~~~~~~~~~~  534 (615)
                      ...                         .++.++|||||||++|||+||. .|+......+.  +.    .         
T Consensus       184 ~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~~--~~----~---------  248 (299)
T d1ywna1         184 IYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE--FC----R---------  248 (299)
T ss_dssp             CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHH--HH----H---------
T ss_pred             ccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHHH--HH----H---------
Confidence            311                         1456899999999999999975 46654432221  11    1         


Q ss_pred             HHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          535 ERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       535 ~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                       .+.+-..+.    .+......+.+++.+||+.||++||||+||+++|+.+.++
T Consensus       249 -~~~~~~~~~----~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~L~~ilq~  297 (299)
T d1ywna1         249 -RLKEGTRMR----APDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  297 (299)
T ss_dssp             -HHHHTCCCC----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             -HHhcCCCCC----CCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence             111112222    2333445689999999999999999999999999988654

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-39  Score=333.22  Aligned_cols=222  Identities=23%  Similarity=0.367  Sum_probs=171.7

Q ss_pred             ceEEEEEEC-------CeEEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATID-------GKVLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~~-------g~~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||+|.+.       ++.||||+++.        .+.+|++++++++|||||+++|+|... +..++||||+++|+|.+
T Consensus        34 G~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~-~~~~lv~e~~~~g~l~~  112 (308)
T d1p4oa_          34 GMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG-QPTLVIMELMTRGDLKS  112 (308)
T ss_dssp             SEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSS-SSCEEEEECCTTCBHHH
T ss_pred             eEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecC-CceeEEEeecCCCCHHH
Confidence            589999873       47899999962        378999999999999999999998754 47899999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++...............++|.++.+++.|+|.||.|||+++   |+||||||+|||+|+++++||+|||+|+...     
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~---ivHrDlk~~NiLld~~~~~Kl~DFGla~~~~~~~~~  189 (308)
T d1p4oa_         113 YLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANK---FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYY  189 (308)
T ss_dssp             HHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCE
T ss_pred             HHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCC---eeeceEcCCceeecCCceEEEeecccceeccCCcce
Confidence            98753210000001123799999999999999999999997   9999999999999999999999999997541     


Q ss_pred             --------------------CCCCCcccchhHHHHHHHHHcCC-CCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 --------------------NDVMPKFDVFAFGVVLLELLSGK-KATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 --------------------~~~~~k~DV~SfGvvl~ElltG~-~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                          ..+++++||||||+++|||+||+ .|+......+                    .+..+.
T Consensus       190 ~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~~--------------------~~~~i~  249 (308)
T d1p4oa_         190 RKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ--------------------VLRFVM  249 (308)
T ss_dssp             EGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHH--------------------HHHHHH
T ss_pred             eeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCCHHH--------------------HHHHHH
Confidence                                12456899999999999999986 5554332110                    011111


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccch
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQST  589 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~~  589 (615)
                      +... ...+......+.+|+.+||+.||++||||.||+++|++..+..
T Consensus       250 ~~~~-~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~~~  296 (308)
T d1p4oa_         250 EGGL-LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG  296 (308)
T ss_dssp             TTCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTT
T ss_pred             hCCC-CCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCC
Confidence            1111 1223344457899999999999999999999999998776653

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-39  Score=325.86  Aligned_cols=203  Identities=21%  Similarity=0.340  Sum_probs=166.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||+|..  +|+.||||+++.          .+.+|+++|++++|||||++++++.+. +..++||||+++|+|.+++.
T Consensus        22 g~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-~~~~ivmEy~~gg~L~~~~~  100 (288)
T d1uu3a_          22 STVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDD-EKLYFGLSYAKNGELLKYIR  100 (288)
T ss_dssp             CEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECS-SEEEEEECCCTTEEHHHHHH
T ss_pred             eEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEEC-CEEEEEEEccCCCCHHHhhh
Confidence            58999997  689999999852          367899999999999999999998754 47999999999999999987


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ...          .+++.++..++.|++.||+|||+++   |+||||||+|||+++++.+||+|||+|+...        
T Consensus       101 ~~~----------~l~e~~~~~~~~qi~~al~ylH~~~---iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~  167 (288)
T d1uu3a_         101 KIG----------SFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARA  167 (288)
T ss_dssp             HHS----------SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECC--------
T ss_pred             ccC----------CCCHHHHHHHHHHHHHHHHhhcccc---EEcCcCCccccccCCCceEEecccccceecccCCccccc
Confidence            654          3899999999999999999999998   9999999999999999999999999996532        


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                       ..++.++|||||||++|||++|+.||.....   ..+.   ..           +.. .++. 
T Consensus       168 ~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~---~~~~---~~-----------i~~-~~~~-  228 (288)
T d1uu3a_         168 NSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE---YLIF---QK-----------IIK-LEYD-  228 (288)
T ss_dssp             --CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHH---HH-----------HHT-TCCC-
T ss_pred             ccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCH---HHHH---HH-----------HHc-CCCC-
Confidence                             1245689999999999999999999975431   1111   00           110 1122 


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                         +|......+.+|+.+||+.||++|||++|++..
T Consensus       229 ---~p~~~s~~~~~li~~~L~~dP~~R~t~~e~~~~  261 (288)
T d1uu3a_         229 ---FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGY  261 (288)
T ss_dssp             ---CCTTCCHHHHHHHHTTSCSSGGGSTTSGGGTCH
T ss_pred             ---CCccCCHHHHHHHHHHccCCHhHCcCHHHHcCC
Confidence               233344567899999999999999999997654

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.3e-38  Score=324.09  Aligned_cols=207  Identities=23%  Similarity=0.350  Sum_probs=161.6

Q ss_pred             ceEEEEEE--CCeEEEEEEccH--------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE--------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~--------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||+|..  +|+.||||++..        .+.+|+++|++++|||||++++++.+. +..++||||+++|+|.++|...
T Consensus        23 g~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~-~~~~lvmE~~~gg~L~~~l~~~  101 (307)
T d1a06a_          23 SEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESG-GHLYLIMQLVSGGELFDRIVEK  101 (307)
T ss_dssp             GGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECS-SEEEEEECCCCSCBHHHHHHTC
T ss_pred             eEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC-CEEEEEEeccCCCcHHHhhhcc
Confidence            58999997  689999999852        356899999999999999999998754 5799999999999999999764


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeC---CCCcEEEeecCCCCCCC-------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD---SRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld---~~~~~kl~DFGla~~~~-------  482 (615)
                      .          .+++.++..++.|++.||+|||+++   |+||||||+|||+.   +++.+||+|||+|+...       
T Consensus       102 ~----------~l~e~~~~~~~~qi~~al~ylH~~~---iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~~~~  168 (307)
T d1a06a_         102 G----------FYTERDASRLIFQVLDAVKYLHDLG---IVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLST  168 (307)
T ss_dssp             S----------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESSSSTTCCEEECCC--------------
T ss_pred             c----------CCCHHHHHHHHHHHHHHHHhhhhce---eeeEEecccceeecccCCCceEEEeccceeEEccCCCeeee
Confidence            3          3999999999999999999999998   99999999999994   57899999999996531       


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ..++.++|||||||++|||++|+.||......   ....   .          ...  .+.....
T Consensus       169 ~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~---~~~~---~----------i~~--~~~~~~~  230 (307)
T d1a06a_         169 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDA---KLFE---Q----------ILK--AEYEFDS  230 (307)
T ss_dssp             ----CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH---HHHH---H----------HHT--TCCCCCT
T ss_pred             eeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHH---HHHH---H----------Hhc--cCCCCCC
Confidence                           12567999999999999999999999754321   1111   0          011  1111222


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ..+.+....+.+|+.+||+.||++|||+.|++++
T Consensus       231 ~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  264 (307)
T d1a06a_         231 PYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQH  264 (307)
T ss_dssp             TTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             ccccCCCHHHHHHHHHHccCCHhHCcCHHHHhcC
Confidence            2233444568899999999999999999999885

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=4e-38  Score=318.68  Aligned_cols=207  Identities=22%  Similarity=0.312  Sum_probs=167.3

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------------HHHHHHHHHHHhcC-CCCcccEEEEEEcCCCcEEEEEeecCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------------EDVTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENG  403 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------------~~~~~Ei~~l~~l~-H~niv~l~g~~~~~~~~~~lV~E~~~~G  403 (615)
                      |.||++..  +|+.||||+++                +.+.+|+.+|++++ |||||++++++.+. +..|+||||+++|
T Consensus        17 g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~-~~~~ivmE~~~~g   95 (277)
T d1phka_          17 SVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN-TFFFLVFDLMKKG   95 (277)
T ss_dssp             EEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS-SEEEEEEECCTTC
T ss_pred             eEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC-cceEEEEEcCCCc
Confidence            58999997  78999999974                23678999999997 99999999998764 4899999999999


Q ss_pred             CHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC
Q 047629          404 SLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN  483 (615)
Q Consensus       404 sL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~  483 (615)
                      +|.++|....          .+++.++..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+++....
T Consensus        96 ~L~~~l~~~~----------~l~e~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~  162 (277)
T d1phka_          96 ELFDYLTEKV----------TLSEKETRKIMRALLEVICALHKLN---IVHRDLKPENILLDDDMNIKLTDFGFSCQLDP  162 (277)
T ss_dssp             BHHHHHHHHS----------SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEECCT
T ss_pred             hHHHHHHhcC----------CCCHHHHHHHHHHHHHHHHHHHHcC---CcccccccceEEEcCCCCeEEccchheeEccC
Confidence            9999997643          3999999999999999999999998   99999999999999999999999999965321


Q ss_pred             ----------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHH
Q 047629          484 ----------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREE  535 (615)
Q Consensus       484 ----------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~  535 (615)
                                                  .++.++||||+||++|||++|+.||......+   ..   ...         
T Consensus       163 ~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~---~~---~~i---------  227 (277)
T d1phka_         163 GEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQML---ML---RMI---------  227 (277)
T ss_dssp             TCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH---HHH---------
T ss_pred             CCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCHHH---HH---HHH---------
Confidence                                        13568999999999999999999997644211   11   111         


Q ss_pred             HHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          536 RLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       536 ~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       ...  ..............++.+|+++||+.||.+|||+.||+++
T Consensus       228 -~~~--~~~~~~~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~h  270 (277)
T d1phka_         228 -MSG--NYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAH  270 (277)
T ss_dssp             -HHT--CCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred             -HhC--CCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence             111  1111112223444568999999999999999999998764

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-38  Score=328.38  Aligned_cols=221  Identities=25%  Similarity=0.395  Sum_probs=170.4

Q ss_pred             ceEEEEEE-------CCeEEEEEEcc--------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI-------DGKVLAVKKIK--------EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~-------~g~~vAvK~~~--------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~  406 (615)
                      |.||+|++       +++.||||+++        ..+.+|+.+++++ +|||||+++|+|.+. ...++||||+++|+|.
T Consensus        37 g~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~-~~~~lvmE~~~~g~l~  115 (311)
T d1t46a_          37 GKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIG-GPTLVITEYCCYGDLL  115 (311)
T ss_dssp             EEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS-SSCEEEEECCTTEEHH
T ss_pred             eEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeC-CEEEEEEEcCCCCCHH
Confidence            58999986       34789999986        2478899999999 799999999999764 4789999999999999


Q ss_pred             HhhccCCCCCCC--------CCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCC
Q 047629          407 KWLHPKSKSSSS--------SGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA  478 (615)
Q Consensus       407 ~~L~~~~~~~~~--------~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  478 (615)
                      ++++........        ......+++..+.+++.||+.||+|||+++   ++||||||+|||++.++.+|++|||++
T Consensus       116 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~---ivHrDLKp~NIl~~~~~~~ki~DfG~~  192 (311)
T d1t46a_         116 NFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNILLTHGRITKICDFGLA  192 (311)
T ss_dssp             HHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEETTTEEEECCCGGG
T ss_pred             HHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccccccccccccCcccccccchh
Confidence            999765421100        011124899999999999999999999998   999999999999999999999999999


Q ss_pred             CCCCC-------------------------CCCCcccchhHHHHHHHHHcCCCC-CCCCCCChhHHHHHHHHHHHhHHHH
Q 047629          479 APATN-------------------------DVMPKFDVFAFGVVLLELLSGKKA-TRTTENGKTAVLWKEIREVLKVEEK  532 (615)
Q Consensus       479 ~~~~~-------------------------~~~~k~DV~SfGvvl~ElltG~~p-~~~~~~~~~~~l~~~~~~~~~~~~~  532 (615)
                      +....                         .++.++|||||||++|||+|++.| +......+.  +..    .      
T Consensus       193 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~--~~~----~------  260 (311)
T d1t46a_         193 RDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSK--FYK----M------  260 (311)
T ss_dssp             SCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHH--HHH----H------
T ss_pred             eeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCHHHH--HHH----H------
Confidence            75422                         145689999999999999995554 443332211  111    1      


Q ss_pred             HHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhccc
Q 047629          533 REERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       533 ~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~  587 (615)
                          +..-..+    ..+......+.+|+.+||+.||++||||.||+++|+++..
T Consensus       261 ----i~~~~~~----~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~i~  307 (311)
T d1t46a_         261 ----IKEGFRM----LSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQIS  307 (311)
T ss_dssp             ----HHHTCCC----CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ----HhcCCCC----CCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhhc
Confidence                1111112    2233444568999999999999999999999999986543

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-38  Score=324.23  Aligned_cols=220  Identities=25%  Similarity=0.397  Sum_probs=170.4

Q ss_pred             ceEEEEEEC---------CeEEEEEEcc--------HHHHHHHHHHHhc-CCCCcccEEEEEEcCCCcEEEEEeecCCCC
Q 047629          343 KSVYRATID---------GKVLAVKKIK--------EDVTEELRILQRI-NHANLVKLMGVSSDSQGNRFLVYEYAENGS  404 (615)
Q Consensus       343 ~~Vy~~~~~---------g~~vAvK~~~--------~~~~~Ei~~l~~l-~H~niv~l~g~~~~~~~~~~lV~E~~~~Gs  404 (615)
                      |.||+|...         +..||||+++        .++.+|...+.++ +|||||+++|+|.+. +..++||||+++|+
T Consensus        27 g~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~-~~~~~v~e~~~~g~  105 (299)
T d1fgka_          27 GQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD-GPLYVIVEYASKGN  105 (299)
T ss_dssp             -CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS-SSCEEEECCCTTCB
T ss_pred             cEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccC-CeEEEEEEccCCCc
Confidence            589999862         2479999985        3467799999888 899999999999754 57999999999999


Q ss_pred             HHHhhccCCCCCC------CCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCC
Q 047629          405 LDKWLHPKSKSSS------SSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLA  478 (615)
Q Consensus       405 L~~~L~~~~~~~~------~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla  478 (615)
                      |.++|........      .......+++.++++++.|++.||+|||+++   |+||||||+|||++.++.+||+|||++
T Consensus       106 l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~---ivHrDiKp~NiLl~~~~~~kl~dfg~~  182 (299)
T d1fgka_         106 LREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKK---CIHRDLAARNVLVTEDNVMKIADFGLA  182 (299)
T ss_dssp             HHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECSTTCC
T ss_pred             HHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCC---EEeeeecccceeecCCCCeEeccchhh
Confidence            9999976542110      0011124899999999999999999999998   999999999999999999999999998


Q ss_pred             CCCC-------------------------CCCCCcccchhHHHHHHHHHc-CCCCCCCCCCChhHHHHHHHHHHHhHHHH
Q 047629          479 APAT-------------------------NDVMPKFDVFAFGVVLLELLS-GKKATRTTENGKTAVLWKEIREVLKVEEK  532 (615)
Q Consensus       479 ~~~~-------------------------~~~~~k~DV~SfGvvl~Ellt-G~~p~~~~~~~~~~~l~~~~~~~~~~~~~  532 (615)
                      +...                         ..+++|+|||||||++|||++ |+.|+......   ..+.           
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~---~~~~-----------  248 (299)
T d1fgka_         183 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVE---ELFK-----------  248 (299)
T ss_dssp             CCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH---HHHH-----------
T ss_pred             ccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHH---HHHH-----------
Confidence            7541                         125678999999999999998 67777543311   1111           


Q ss_pred             HHHHHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhccc
Q 047629          533 REERLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       533 ~~~~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~  587 (615)
                         .+..-..+    ..+......+.+|+.+||+.||++|||+.||++.|+++..
T Consensus       249 ---~i~~~~~~----~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~~L~~i~a  296 (299)
T d1fgka_         249 ---LLKEGHRM----DKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVA  296 (299)
T ss_dssp             ---HHHTTCCC----CCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ---HHHcCCCC----CCCccchHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHhh
Confidence               11111222    2333445568999999999999999999999999988754

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=5.1e-38  Score=328.57  Aligned_cols=208  Identities=22%  Similarity=0.292  Sum_probs=168.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||+|..  +|+.||||+++       ..+.+|+++|++++|||||++++++.+. +.+++||||+++|+|.+++....
T Consensus        43 g~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~-~~~~ivmE~~~gg~L~~~~~~~~  121 (352)
T d1koba_          43 GVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDK-YEMVLILEFLSGGELFDRIAAED  121 (352)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECS-SEEEEEEECCCCCBHHHHTTCTT
T ss_pred             eEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC-CEEEEEEEcCCCChHHHHHHhcC
Confidence            58999997  69999999985       2467899999999999999999998754 58999999999999999887654


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeC--CCCcEEEeecCCCCCCC---------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLD--SRFKAKIANFSLAAPAT---------  482 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld--~~~~~kl~DFGla~~~~---------  482 (615)
                      .         .|++.++..|+.||+.||.|||+++   |+||||||+|||++  .++.+||+|||+|+...         
T Consensus       122 ~---------~l~e~~~~~i~~qi~~aL~ylH~~~---iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~~~~~~  189 (352)
T d1koba_         122 Y---------KMSEAEVINYMRQACEGLKHMHEHS---IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTT  189 (352)
T ss_dssp             C---------CBCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEEC
T ss_pred             C---------CCCHHHHHHHHHHHHHHHHHHHHCC---eeecccccccccccccCCCeEEEeecccceecCCCCceeecc
Confidence            3         3999999999999999999999998   99999999999998  56899999999996542         


Q ss_pred             -------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          483 -------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       483 -------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                   ..++.++||||+||++|||++|+.||......+   ..   ..           +.. .+.......
T Consensus       190 gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~---~~---~~-----------i~~-~~~~~~~~~  251 (352)
T d1koba_         190 ATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLE---TL---QN-----------VKR-CDWEFDEDA  251 (352)
T ss_dssp             SSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH---HH---HH-----------HHH-CCCCCCSST
T ss_pred             CcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH---HH---HH-----------HHh-CCCCCCccc
Confidence                         125678999999999999999999997544211   11   10           000 112222222


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .......+.+|+.+||+.||.+|||+.|++++
T Consensus       252 ~~~~s~~~~~li~~~L~~dp~~R~s~~eil~H  283 (352)
T d1koba_         252 FSSVSPEAKDFIKNLLQKEPRKRLTVHDALEH  283 (352)
T ss_dssp             TTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             ccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            33344567899999999999999999999874

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-38  Score=323.26  Aligned_cols=207  Identities=25%  Similarity=0.340  Sum_probs=165.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||+|..  +|+.||||+++             +.+.+|+++|++++|||||++++++.+. +..++|||||++|+|.+
T Consensus        24 g~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~-~~~~iv~E~~~gg~L~~  102 (293)
T d1jksa_          24 AVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENK-TDVILILELVAGGELFD  102 (293)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECS-SEEEEEEECCCSCBHHH
T ss_pred             eEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC-CEEEEEEEcCCCccccc
Confidence            58999997  68999999874             3578999999999999999999998764 48999999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC----cEEEeecCCCCCCC-
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF----KAKIANFSLAAPAT-  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~----~~kl~DFGla~~~~-  482 (615)
                      ++....          .+++.++..++.|++.||+|||+++   |+||||||+|||++.++    .+|++|||+|+... 
T Consensus       103 ~i~~~~----------~l~~~~~~~~~~qi~~al~yLH~~~---ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~  169 (293)
T d1jksa_         103 FLAEKE----------SLTEEEATEFLKQILNGVYYLHSLQ---IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF  169 (293)
T ss_dssp             HHHHHS----------SCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTT
T ss_pred             hhcccc----------ccchhHHHHHHHHHHHHHHhhhhcc---eeecccccceEEEecCCCcccceEecchhhhhhcCC
Confidence            997653          3899999999999999999999998   99999999999998776    59999999986432 


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                           ..++.++|||||||++|||++|+.||......+   ..   ...           .. .
T Consensus       170 ~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~---~~---~~i-----------~~-~  231 (293)
T d1jksa_         170 GNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE---TL---ANV-----------SA-V  231 (293)
T ss_dssp             SCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HH---HHH-----------HT-T
T ss_pred             CccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHHH---HH---HHH-----------Hh-c
Confidence                                 125679999999999999999999997543211   11   110           00 0


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ........+......+.+|+++||+.||++|||++|++++
T Consensus       232 ~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  271 (293)
T d1jksa_         232 NYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH  271 (293)
T ss_dssp             CCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             CCCCCchhcCCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            1111111111233457899999999999999999999874

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=7.9e-38  Score=326.83  Aligned_cols=208  Identities=22%  Similarity=0.276  Sum_probs=166.3

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKS  413 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~  413 (615)
                      |.||+|..  +|+.||||++.       +.+.+|+++|++++|||||++++++.+. +..++|||||++|+|.+++....
T Consensus        40 g~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~-~~~~ivmE~~~gg~L~~~l~~~~  118 (350)
T d1koaa2          40 GVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDD-NEMVMIYEFMSGGELFEKVADEH  118 (350)
T ss_dssp             EEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEET-TEEEEEECCCCSCBHHHHHTCTT
T ss_pred             eEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEEC-CEEEEEEEcCCCCCHHHHHHhhc
Confidence            58999997  69999999985       3477899999999999999999998764 58999999999999999996543


Q ss_pred             CCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC--CCcEEEeecCCCCCCCC--------
Q 047629          414 KSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS--RFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       414 ~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~--~~~~kl~DFGla~~~~~--------  483 (615)
                      .         .+++..+..|+.||+.||+|||+++   |+||||||+|||++.  ++.+||+|||+|+....        
T Consensus       119 ~---------~l~e~~~~~i~~qi~~aL~ylH~~~---iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~  186 (350)
T d1koaa2         119 N---------KMSEDEAVEYMRQVCKGLCHMHENN---YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTT  186 (350)
T ss_dssp             S---------CBCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSCEEEEC
T ss_pred             C---------CCCHHHHHHHHHHHHHHHHHHHhcC---CeeeeechhHeeeccCCCCeEEEeecchheecccccccceec
Confidence            2         3999999999999999999999998   999999999999954  67899999999965421        


Q ss_pred             --------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCC
Q 047629          484 --------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFY  549 (615)
Q Consensus       484 --------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~  549 (615)
                                    .++.++|||||||++|||++|+.||......   ....   ..          ..  .+.......
T Consensus       187 gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~---~~~~---~i----------~~--~~~~~~~~~  248 (350)
T d1koaa2         187 GTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDD---ETLR---NV----------KS--CDWNMDDSA  248 (350)
T ss_dssp             SCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHH---HH----------HH--TCCCSCCGG
T ss_pred             CcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHH---HHHH---HH----------Hh--CCCCCCccc
Confidence                          2456899999999999999999999754321   1111   10          00  111111111


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          550 PIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       550 ~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .......+.+|+.+||+.||++|||++|++++
T Consensus       249 ~~~~s~~~~~li~~~L~~dP~~R~t~~eil~h  280 (350)
T d1koaa2         249 FSGISEDGKDFIRKLLLADPNTRMTIHQALEH  280 (350)
T ss_dssp             GGGCCHHHHHHHHHHCCSSGGGSCCHHHHHHS
T ss_pred             ccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            22334567899999999999999999999885

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-37  Score=319.46  Aligned_cols=203  Identities=24%  Similarity=0.325  Sum_probs=166.5

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||||++++          .+.+|+.+|++++|||||++++++.+. ..+++||||+++|+|.+++.
T Consensus        19 g~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~-~~~~iv~ey~~gg~L~~~~~   97 (337)
T d1o6la_          19 GKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTH-DRLCFVMEYANGGELFFHLS   97 (337)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECS-SEEEEEEECCTTCBHHHHHH
T ss_pred             eEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccc-cccccceeccCCCchhhhhh
Confidence            58999997  799999999863          256899999999999999999998865 47999999999999999998


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ....          +++.....++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+|+...        
T Consensus        98 ~~~~----------~~e~~~~~~~~qil~al~ylH~~~---iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~~~~~  164 (337)
T d1o6la_          98 RERV----------FTEERARFYGAEIVSALEYLHSRD---VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKT  164 (337)
T ss_dssp             HHSC----------CCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCC
T ss_pred             cccC----------CcHHHHHHHHHHHhhhhhhhhhcC---ccccccCHHHeEecCCCCEEEeecccccccccCCccccc
Confidence            7543          889999999999999999999998   9999999999999999999999999997532        


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ..++.++||||+||++|||++|+.||......+   +..    .         ...  -.+.   
T Consensus       165 ~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~---~~~----~---------i~~--~~~~---  223 (337)
T d1o6la_         165 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER---LFE----L---------ILM--EEIR---  223 (337)
T ss_dssp             CEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHH----H---------HHH--CCCC---
T ss_pred             ceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHHH---HHH----H---------Hhc--CCCC---
Confidence                           125679999999999999999999997644211   110    0         001  1122   


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCC-----HHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPN-----MAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPs-----m~ev~~~  581 (615)
                       +|......+.+|+..||+.||.+||+     +.|++++
T Consensus       224 -~p~~~s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~H  261 (337)
T d1o6la_         224 -FPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  261 (337)
T ss_dssp             -CCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             -CCccCCHHHHHHHHhhccCCchhhcccccccHHHHHcC
Confidence             23334455789999999999999995     7888764

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.9e-37  Score=317.25  Aligned_cols=203  Identities=21%  Similarity=0.329  Sum_probs=166.3

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||||++++          .+.+|+.+|++++|||||++++++.+. +..++||||+++|+|.+++.
T Consensus        18 g~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~-~~~~ivmE~~~gg~l~~~~~   96 (316)
T d1fota_          18 GRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDA-QQIFMIMDYIEGGELFSLLR   96 (316)
T ss_dssp             CEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECS-SEEEEEECCCCSCBHHHHHH
T ss_pred             cEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeC-CeeeeEeeecCCcccccccc
Confidence            48999997  699999999863          366899999999999999999998754 48999999999999999998


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--------  482 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--------  482 (615)
                      ....          +++.....++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+|+...        
T Consensus        97 ~~~~----------~~~~~~~~~~~qi~~al~~lH~~~---iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~~~~~G  163 (316)
T d1fota_          97 KSQR----------FPNPVAKFYAAEVCLALEYLHSKD---IIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCG  163 (316)
T ss_dssp             HTSS----------CCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECTTSCEEECCCSSCEECSSCBCCCCS
T ss_pred             cccc----------ccccHHHHHHHHHHHhhhhhccCc---EEccccCchheeEcCCCCEEEecCccceEeccccccccC
Confidence            7653          788999999999999999999998   9999999999999999999999999996542        


Q ss_pred             ------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          483 ------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       483 ------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                  ..++.++|||||||++|||++|+.||......   ...   ...          ..  ...    .+|
T Consensus       164 t~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~---~~~---~~i----------~~--~~~----~~p  221 (316)
T d1fota_         164 TPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTM---KTY---EKI----------LN--AEL----RFP  221 (316)
T ss_dssp             CTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH---HHH---HHH----------HH--CCC----CCC
T ss_pred             cccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCHH---HHH---HHH----------Hc--CCC----CCC
Confidence                        22567999999999999999999999754321   111   111          01  011    223


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRP-----NMAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~~  581 (615)
                      ......+.+++.+|++.||.+||     |++|++++
T Consensus       222 ~~~s~~~~~li~~~L~~dp~~R~~~~r~t~~~il~H  257 (316)
T d1fota_         222 PFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNH  257 (316)
T ss_dssp             TTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTS
T ss_pred             CCCCHHHHHHHHHHhhhCHHhccccchhhHHHHHcC
Confidence            33345578999999999999996     89998864

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5e-37  Score=322.55  Aligned_cols=206  Identities=20%  Similarity=0.227  Sum_probs=163.4

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH----------HHH---HHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIKED----------VTE---ELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~----------~~~---Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||+|..  +|+.||||++...          +.+   |+++++.++|||||++++++.+. +..++||||+++|+|.+
T Consensus        18 g~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~-~~~~ivmE~~~gg~L~~   96 (364)
T d1omwa3          18 GEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTP-DKLSFILDLMNGGDLHY   96 (364)
T ss_dssp             CEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECS-SEEEEEECCCCSCBHHH
T ss_pred             eEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEEC-CEEEEEEEecCCCcHHH
Confidence            58999998  6999999998532          333   46667777899999999998764 47999999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      +|....          .+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+|+...     
T Consensus        97 ~l~~~~----------~~~e~~~~~~~~qi~~aL~ylH~~~---iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~~~~  163 (364)
T d1omwa3          97 HLSQHG----------VFSEADMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPH  163 (364)
T ss_dssp             HHHHHC----------SCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECSSSCEEECCCTTCEECSSSCCC
T ss_pred             HHHhcc----------cccHHHHHHHHHHHHHHHHHHHHCC---ccceeeccceeEEcCCCcEEEeeeceeeecCCCccc
Confidence            997654          3889999999999999999999998   9999999999999999999999999986432     


Q ss_pred             -----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC
Q 047629          483 -----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL  545 (615)
Q Consensus       483 -----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l  545 (615)
                                       ..+++++|||||||+||||++|+.||......+...+                 ........ 
T Consensus       164 ~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~-----------------~~~~~~~~-  225 (364)
T d1omwa3         164 ASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEI-----------------DRMTLTMA-  225 (364)
T ss_dssp             SCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHH-----------------HHHSSSCC-
T ss_pred             ccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHHH-----------------HHhcccCC-
Confidence                             1256789999999999999999999976543322110                 01111111 


Q ss_pred             CCCCChHHHHHHHHHHHHhhhcCCCCCCC-----HHHHHHH
Q 047629          546 ESFYPIDGALSLATLARACTMDKSLSRPN-----MAEVVFN  581 (615)
Q Consensus       546 ~~~~~~~~~~~l~~l~~~C~~~dP~~RPs-----m~ev~~~  581 (615)
                       ..++......+.+|+.+||+.||++|||     +.|++++
T Consensus       226 -~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~H  265 (364)
T d1omwa3         226 -VELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKES  265 (364)
T ss_dssp             -CCCCSSSCHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHTS
T ss_pred             -CCCCCCCCHHHHHHHHHHcccCHHHhCCCcccCHHHHHcC
Confidence             1223333445789999999999999999     6888763

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-37  Score=318.22  Aligned_cols=208  Identities=20%  Similarity=0.252  Sum_probs=165.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      |.||+|..  +|+.||||.++      ..+.+|+++|++++|||||++++++.+. +..|+||||+++|+|.+++.....
T Consensus        19 g~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~-~~~~lvmE~~~gg~L~~~i~~~~~   97 (321)
T d1tkia_          19 GIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESM-EELVMIFEFISGLDIFERINTSAF   97 (321)
T ss_dssp             EEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEET-TEEEEEECCCCCCBHHHHHTSSSC
T ss_pred             eEEEEEEECCCCcEEEEEEEcCCcccHHHHHHHHHHHHhCCCCCCCeEEEEEEEC-CEEEEEEecCCCCcHHHHHHhcCC
Confidence            58999997  68999999986      2467999999999999999999998754 589999999999999999976542


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC--CcEEEeecCCCCCCCC---------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR--FKAKIANFSLAAPATN---------  483 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~--~~~kl~DFGla~~~~~---------  483 (615)
                               .+++.++..++.||+.||+|||+++   |+||||||+|||++.+  ..+||+|||+++....         
T Consensus        98 ---------~l~e~~~~~i~~qi~~al~yLH~~~---iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~~~~~~~  165 (321)
T d1tkia_          98 ---------ELNEREIVSYVHQVCEALQFLHSHN---IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFT  165 (321)
T ss_dssp             ---------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEES
T ss_pred             ---------CCCHHHHHHHHHHHHHHHHHHHHcC---CCcccccccceeecCCCceEEEEcccchhhccccCCccccccc
Confidence                     3899999999999999999999998   9999999999999854  5899999999975422         


Q ss_pred             -------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          484 -------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       484 -------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                   .++.++||||+||++|||++|+.||......+   ..   ....          ..  ...+.....
T Consensus       166 t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~---~~---~~i~----------~~--~~~~~~~~~  227 (321)
T d1tkia_         166 APEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQ---II---ENIM----------NA--EYTFDEEAF  227 (321)
T ss_dssp             CGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHH---HH---HHHH----------HT--CCCCCHHHH
T ss_pred             ccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHHH---HH---HHHH----------hC--CCCCChhhc
Confidence                         14568999999999999999999997644211   11   1110          00  000100000


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .+....+.+|+..|+..||++|||+.|++++
T Consensus       228 ~~~s~~~~~li~~~L~~dp~~R~s~~eil~h  258 (321)
T d1tkia_         228 KEISIEAMDFVDRLLVKERKSRMTASEALQH  258 (321)
T ss_dssp             TTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             cCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            1123457899999999999999999999874

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=4.4e-37  Score=311.26  Aligned_cols=213  Identities=22%  Similarity=0.313  Sum_probs=169.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----------HHHHHHHHHHHhcCCCCcccEEEEEEcCCC---cEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK----------EDVTEELRILQRINHANLVKLMGVSSDSQG---NRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~---~~~lV~E~~~~GsL~~  407 (615)
                      |.||+|..  +|+.||||+++          ..+.+|+++|++++|||||++++++...+.   ..|+||||+++|+|.+
T Consensus        21 g~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~~lvmE~~~g~~L~~  100 (277)
T d1o6ya_          21 SEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRD  100 (277)
T ss_dssp             EEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEEEEEEECCCEEEHHH
T ss_pred             eEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceEEEEEECCCCCEehh
Confidence            48999997  69999999984          247789999999999999999998865432   3789999999999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-----  482 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-----  482 (615)
                      ++....          .+++.+++.++.||+.||+|||+++   |+||||||+|||++.++..+++|||+++...     
T Consensus       101 ~~~~~~----------~l~~~~~~~i~~qi~~al~~lH~~~---iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~~~  167 (277)
T d1o6ya_         101 IVHTEG----------PMTPKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNS  167 (277)
T ss_dssp             HHHHHC----------SCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTSCEEECCCTTCEECC-----
T ss_pred             hhcccC----------CCCHHHHHHHHHHHHHHHHHHHhCC---ccCccccCcccccCccccceeehhhhhhhhcccccc
Confidence            987654          3899999999999999999999998   9999999999999999999999999875321     


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                                           ..+++++|||||||++|||+||+.||......+  .+    ..          .+..  
T Consensus       168 ~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~--~~----~~----------~~~~--  229 (277)
T d1o6ya_         168 VTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVS--VA----YQ----------HVRE--  229 (277)
T ss_dssp             -----------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH--HH----HH----------HHHC--
T ss_pred             ccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCHHH--HH----HH----------HHhc--
Confidence                                 125678999999999999999999997543211  11    11          1111  


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHhcc
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRP-NMAEVVFNLSVLT  586 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RP-sm~ev~~~L~~l~  586 (615)
                      ++........+....+.+++.+|++.||.+|| |++|+...|.++.
T Consensus       230 ~~~~~~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r~~  275 (277)
T d1o6ya_         230 DPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH  275 (277)
T ss_dssp             CCCCGGGTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             CCCCCchhccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHHHh
Confidence            11111111223345688999999999999999 8999999987764

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-37  Score=313.72  Aligned_cols=220  Identities=26%  Similarity=0.319  Sum_probs=162.5

Q ss_pred             ceEEEEEE--CCeEEEEEEccH------------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHh
Q 047629          343 KSVYRATI--DGKVLAVKKIKE------------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKW  408 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~------------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~  408 (615)
                      |.||+|..  +|+.||||+++.            .+.+|+++|++++|||||++++++.+. +..++||||+++|++..+
T Consensus        12 g~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~-~~~~ivmE~~~~~~~~~~   90 (299)
T d1ua2a_          12 ATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHK-SNISLVFDFMETDLEVII   90 (299)
T ss_dssp             EEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCT-TCCEEEEECCSEEHHHHH
T ss_pred             eEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccC-CceeehhhhhcchHHhhh
Confidence            58999997  689999999852            367899999999999999999998754 479999999998877766


Q ss_pred             hccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-----
Q 047629          409 LHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-----  483 (615)
Q Consensus       409 L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-----  483 (615)
                      .....          .+++.++..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+++....     
T Consensus        91 ~~~~~----------~l~~~~~~~~~~qil~aL~~lH~~~---iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~~  157 (299)
T d1ua2a_          91 KDNSL----------VLTPSHIKAYMLMTLQGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAY  157 (299)
T ss_dssp             TTCCS----------SCCSSHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCC
T ss_pred             hhccc----------CCCHHHHHHHHHHHHHHHHHhhccc---eecccCCcceEEecCCCccccccCccccccCCCcccc
Confidence            54432          3888899999999999999999998   99999999999999999999999999865321     


Q ss_pred             -------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc---
Q 047629          484 -------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM---  541 (615)
Q Consensus       484 -------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---  541 (615)
                                         .++.++|||||||++|||++|+.||....+.+.   ...+.+.+....  ........   
T Consensus       158 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~---l~~i~~~~~~~~--~~~~~~~~~~~  232 (299)
T d1ua2a_         158 THQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQ---LTRIFETLGTPT--EEQWPDMCSLP  232 (299)
T ss_dssp             CCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH---HHHHHHHHCCCC--TTTSSSTTSST
T ss_pred             cceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHH---HHHHHHhcCCCC--hhhccchhccc
Confidence                               145689999999999999999999875442211   111111110000  00000000   


Q ss_pred             CC-cCC--CCCC-----hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 DP-NLE--SFYP-----IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp-~l~--~~~~-----~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      +. ...  ...+     ......+.+|+.+|++.||++|||++|++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~H  280 (299)
T d1ua2a_         233 DYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM  280 (299)
T ss_dssp             TCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             hhhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhCC
Confidence            00 000  0011     1123468899999999999999999999764

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-37  Score=317.35  Aligned_cols=212  Identities=17%  Similarity=0.230  Sum_probs=164.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--HHHHHHHHHHHhc-CCCCcccEEEEEEc---CCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK--EDVTEELRILQRI-NHANLVKLMGVSSD---SQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--~~~~~Ei~~l~~l-~H~niv~l~g~~~~---~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      |.||+|..  +|+.||||+++  ..+.+|++++.++ +|||||++++++.+   .+...|+|||||++|+|.++|.....
T Consensus        26 g~Vy~a~~~~~~~~vAiK~i~~~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~ivmEy~~gg~L~~~i~~~~~  105 (335)
T d2ozaa1          26 GKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGD  105 (335)
T ss_dssp             CEEEEEEETTTCCEEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHSCSC
T ss_pred             eEEEEEEECCCCCEEEEEEECCcHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEEEEECCCCCcHHHHHHhcCC
Confidence            58999997  68999999996  4678899997765 89999999998753   23358999999999999999976432


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC---CCcEEEeecCCCCCCCC--------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS---RFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~---~~~~kl~DFGla~~~~~--------  483 (615)
                      .        .|++.++..|+.|++.||+|||+++   |+||||||+|||++.   ++.+||+|||+|+....        
T Consensus       106 ~--------~l~e~~~~~i~~qi~~al~ylH~~~---iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~~~~~~  174 (335)
T d2ozaa1         106 Q--------AFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPC  174 (335)
T ss_dssp             C--------CEEHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCCCCCCCS
T ss_pred             C--------CcCHHHHHHHHHHHHHHHHHHHHcC---CccccccccccccccccccccccccccceeeeccCCCcccccc
Confidence            1        3999999999999999999999998   999999999999986   46799999999964321        


Q ss_pred             --------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcC--CC
Q 047629          484 --------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNL--ES  547 (615)
Q Consensus       484 --------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l--~~  547 (615)
                                    .++.++|||||||+||||+||+.||..........                .....+.....  ..
T Consensus       175 gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~----------------~~~~~i~~~~~~~~~  238 (335)
T d2ozaa1         175 YTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISP----------------GMKTRIRMGQYEFPN  238 (335)
T ss_dssp             CCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC------------------------CCCSCSSSCCT
T ss_pred             CCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHH----------------HHHHHHhcCCCCCCC
Confidence                          14568999999999999999999997644322110                00011111111  11


Q ss_pred             CCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 FYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 ~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .........+.+|+.+|++.||++|||+.|++++
T Consensus       239 ~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  272 (335)
T d2ozaa1         239 PEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH  272 (335)
T ss_dssp             THHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             cccccCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence            1112334568999999999999999999999874

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-36  Score=317.56  Aligned_cols=203  Identities=20%  Similarity=0.294  Sum_probs=166.0

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhc
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLH  410 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~  410 (615)
                      |.||++..  +|+.||||+++.          .+.+|+++|++++|||||++++++.+. ...++||||+.+|+|.+++.
T Consensus        55 g~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~-~~~~~v~e~~~~g~l~~~l~  133 (350)
T d1rdqe_          55 GRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDN-SNLYMVMEYVAGGEMFSHLR  133 (350)
T ss_dssp             CEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECS-SEEEEEEECCTTCBHHHHHH
T ss_pred             cEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccccc-cccccccccccccchhhhHh
Confidence            58999997  699999999853          367899999999999999999998764 47899999999999999997


Q ss_pred             cCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC-------
Q 047629          411 PKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN-------  483 (615)
Q Consensus       411 ~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~-------  483 (615)
                      ...          .+++.++..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+|+....       
T Consensus       134 ~~~----------~l~e~~~~~i~~qi~~aL~yLH~~~---iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~~~~~~G  200 (350)
T d1rdqe_         134 RIG----------RFSEPHARFYAAQIVLTFEYLHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCG  200 (350)
T ss_dssp             HHC----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECSSCBCCCEE
T ss_pred             hcC----------CCCHHHHHHHHHHHHHHHHHHHhCC---EecCcCCHHHcccCCCCCEEeeeceeeeecccccccccC
Confidence            654          2899999999999999999999998   99999999999999999999999999975422       


Q ss_pred             -------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCCCCC
Q 047629          484 -------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLESFYP  550 (615)
Q Consensus       484 -------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~  550 (615)
                                   .++.++|||||||++|||++|+.||.....   .....   ..          ...  .+.    .+
T Consensus       201 t~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~---~~~~~---~i----------~~~--~~~----~p  258 (350)
T d1rdqe_         201 TPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP---IQIYE---KI----------VSG--KVR----FP  258 (350)
T ss_dssp             CGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHH---HH----------HHC--CCC----CC
T ss_pred             ccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCH---HHHHH---HH----------hcC--CCC----CC
Confidence                         256789999999999999999999975431   11111   00          011  111    22


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCC-----CHHHHHHH
Q 047629          551 IDGALSLATLARACTMDKSLSRP-----NMAEVVFN  581 (615)
Q Consensus       551 ~~~~~~l~~l~~~C~~~dP~~RP-----sm~ev~~~  581 (615)
                      ......+.+++.+||+.||.+|+     |++|++++
T Consensus       259 ~~~s~~~~~li~~~L~~dP~kR~~~~r~t~~ell~H  294 (350)
T d1rdqe_         259 SHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNH  294 (350)
T ss_dssp             TTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTS
T ss_pred             ccCCHHHHHHHHHHhhhCHHhccccccccHHHHHcC
Confidence            33344678999999999999994     89998863

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=311.59  Aligned_cols=222  Identities=21%  Similarity=0.353  Sum_probs=162.1

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.||+|..  +|+.||||+++         ..+.+|+++|++++|||||++++++.+. +..++||||+.+ ++.+++..
T Consensus        16 g~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~-~~~~iv~e~~~~-~~~~~~~~   93 (298)
T d1gz8a_          16 GVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTE-NKLYLVFEFLHQ-DLKKFMDA   93 (298)
T ss_dssp             SEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEET-TEEEEEEECCSE-EHHHHHHH
T ss_pred             eEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccc-cceeEEEeecCC-chhhhhhh
Confidence            58999997  68999999984         3477899999999999999999998764 489999999975 45555543


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC---------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT---------  482 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~---------  482 (615)
                      ....        .+++.++..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+|+...         
T Consensus        94 ~~~~--------~l~e~~~~~~~~qil~~L~yLH~~~---IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~~~~~~  162 (298)
T d1gz8a_          94 SALT--------GIPLPLIKSYLFQLLQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHE  162 (298)
T ss_dssp             TTTT--------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSBCTTCC
T ss_pred             hccc--------CCCHHHHHHHHHHHHHHHHHhhcCC---EEccccCchheeecccCcceeccCCcceeccCCcccceee
Confidence            3221        3999999999999999999999998   9999999999999999999999999984321         


Q ss_pred             ---------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCCC
Q 047629          483 ---------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLES  547 (615)
Q Consensus       483 ---------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~~  547 (615)
                                     ...+.++|||||||++|||++|+.||......  ..+....................  .+....
T Consensus       163 ~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~  238 (298)
T d1gz8a_         163 VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEI--DQLFRIFRTLGTPDEVVWPGVTS--MPDYKP  238 (298)
T ss_dssp             BCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHHHHHHHCCCCTTTSTTGGG--STTCCT
T ss_pred             cccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHH--HHHHHHHHhcCCCchhhcccccc--cccccc
Confidence                           11357899999999999999999999754321  11111111000000000000000  000100


Q ss_pred             CCC-----------hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          548 FYP-----------IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       548 ~~~-----------~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .++           ......+.+|+.+|++.||++|||++|++++
T Consensus       239 ~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H  283 (298)
T d1gz8a_         239 SFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAH  283 (298)
T ss_dssp             TSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence            100           1123467899999999999999999999875

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-36  Score=314.01  Aligned_cols=202  Identities=25%  Similarity=0.366  Sum_probs=163.3

Q ss_pred             ceEEEEEE--CCeEEEEEEccH----------HHHHHHHHHH-hcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIKE----------DVTEELRILQ-RINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~----------~~~~Ei~~l~-~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|..  +|+.||||++++          .+..|..++. .++|||||++++++.+. +..|+||||+++|+|.+++
T Consensus        16 g~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~-~~~yivmEy~~~g~L~~~i   94 (320)
T d1xjda_          16 GKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTK-ENLFFVMEYLNGGDLMYHI   94 (320)
T ss_dssp             SEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECS-SEEEEEEECCTTCBHHHHH
T ss_pred             cEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccC-CceeEEEeecCCCcHHHHh
Confidence            58999998  799999999963          2456777665 68999999999998764 4799999999999999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      .....          +++.++..++.||+.||+|||+++   |+||||||+|||+++++++||+|||+++...       
T Consensus        95 ~~~~~----------~~e~~~~~~~~qi~~al~ylH~~~---iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~~~~  161 (320)
T d1xjda_          95 QSCHK----------FDLSRATFYAAEIILGLQFLHSKG---IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTN  161 (320)
T ss_dssp             HHHSS----------CCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBC
T ss_pred             hccCC----------CCHHHHHHHHHHHHHHHHHHHhCC---eeeccCcccceeecCCCceeccccchhhhccccccccc
Confidence            76543          889999999999999999999998   9999999999999999999999999997532       


Q ss_pred             ----------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcCCcCC
Q 047629          483 ----------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 ----------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~dp~l~  546 (615)
                                      ..++.++|||||||++|||++|+.||.....   ..++..              +. ...+.  
T Consensus       162 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~---~~~~~~--------------i~-~~~~~--  221 (320)
T d1xjda_         162 TFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE---EELFHS--------------IR-MDNPF--  221 (320)
T ss_dssp             CCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHH--------------HH-HCCCC--
T ss_pred             ccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCH---HHHHHH--------------HH-cCCCC--
Confidence                            1256799999999999999999999975432   111110              11 11222  


Q ss_pred             CCCChHHHHHHHHHHHHhhhcCCCCCCCHH-HHHH
Q 047629          547 SFYPIDGALSLATLARACTMDKSLSRPNMA-EVVF  580 (615)
Q Consensus       547 ~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~-ev~~  580 (615)
                        +|......+.+|+.+||+.||.+||++. |+++
T Consensus       222 --~p~~~s~~~~dli~~~L~~dP~~R~s~~~~l~~  254 (320)
T d1xjda_         222 --YPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQ  254 (320)
T ss_dssp             --CCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred             --CCccCCHHHHHHHHHhcccCCCCCcCHHHHHHh
Confidence              2333345578999999999999999995 6754

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=8.5e-37  Score=310.50  Aligned_cols=222  Identities=23%  Similarity=0.305  Sum_probs=165.1

Q ss_pred             ceEEEEEE-CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI-DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||+|.. +|+.||||+++         +.+.+|+.+|++++|||||++++++.+. +..++++||+.++.+..+....
T Consensus        16 g~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~-~~~~i~~e~~~~~~~~~~~~~~   94 (286)
T d1ob3a_          16 GVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTK-KRLVLVFEHLDQDLKKLLDVCE   94 (286)
T ss_dssp             EEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECS-SCEEEEEECCSEEHHHHHHTST
T ss_pred             cEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccC-CceeEEEEeehhhhHHHHHhhc
Confidence            48999998 78999999984         3588999999999999999999998864 4799999999887777766544


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----------  482 (615)
                      .          .+++.++..++.||+.||+|||+++   |+||||||+|||++.++.+|++|||++....          
T Consensus        95 ~----------~l~~~~~~~i~~qi~~~L~~LH~~~---IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~  161 (286)
T d1ob3a_          95 G----------GLESVTAKSFLLQLLNGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEI  161 (286)
T ss_dssp             T----------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------
T ss_pred             C----------CcchhhhHHHHHHHHHHHHHhccCc---EEecCCCCceeeEcCCCCEEecccccceecccCccccceec
Confidence            3          3999999999999999999999998   9999999999999999999999999974321          


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHH-HHHHHHhhh--cCCcC
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE-KREERLRNW--MDPNL  545 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~--~dp~l  545 (615)
                                    ..++.++|||||||++|||++|+.||....+.+  .+.. +........ ..-......  .+...
T Consensus       162 ~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~--~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~  238 (286)
T d1ob3a_         162 VTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEAD--QLMR-IFRILGTPNSKNWPNVTELPKYDPNF  238 (286)
T ss_dssp             CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH--HHHH-HHHHHCCCCTTTSTTGGGSTTCCTTC
T ss_pred             ccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHH--HHHH-HHHhhCCCChhhccchhhhhhccccc
Confidence                          124679999999999999999999997543211  1111 111110000 000000000  00000


Q ss_pred             -------CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          546 -------ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       546 -------~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                             ...........+.+|+.+|++.||++|||++|++++
T Consensus       239 ~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~H  281 (286)
T d1ob3a_         239 TVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEH  281 (286)
T ss_dssp             CCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                   011122234567899999999999999999999753

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=299.39  Aligned_cols=197  Identities=21%  Similarity=0.330  Sum_probs=159.2

Q ss_pred             ceEEEEEE--CCeEEEEEEccHH-------------HHHHHHHHHhcC--CCCcccEEEEEEcCCCcEEEEEeecCC-CC
Q 047629          343 KSVYRATI--DGKVLAVKKIKED-------------VTEELRILQRIN--HANLVKLMGVSSDSQGNRFLVYEYAEN-GS  404 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~~-------------~~~Ei~~l~~l~--H~niv~l~g~~~~~~~~~~lV~E~~~~-Gs  404 (615)
                      |.||+|..  +|+.||||+++.+             +.+|+.+|++++  |||||++++++.+. +..++||||+.+ ++
T Consensus        18 g~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~-~~~~lv~e~~~~~~~   96 (273)
T d1xwsa_          18 GSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP-DSFVLILERPEPVQD   96 (273)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS-SEEEEEEECCSSEEE
T ss_pred             eEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeC-CeEEEEEEeccCcch
Confidence            48999997  6899999998632             468999999996  89999999998764 479999999975 68


Q ss_pred             HHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCC-CcEEEeecCCCCCCCC
Q 047629          405 LDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSR-FKAKIANFSLAAPATN  483 (615)
Q Consensus       405 L~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~-~~~kl~DFGla~~~~~  483 (615)
                      +.+++....          .+++.++..++.|++.||+|||+++   |+||||||+|||++.+ +.+||+|||+|+....
T Consensus        97 l~~~~~~~~----------~l~e~~~~~~~~qi~~al~~lH~~~---iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~  163 (273)
T d1xwsa_          97 LFDFITERG----------ALQEELARSFFWQVLEAVRHCHNCG---VLHRDIKDENILIDLNRGELKLIDFGSGALLKD  163 (273)
T ss_dssp             HHHHHHHHC----------SCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEETTTTEEEECCCTTCEECCS
T ss_pred             HHHHHhccC----------CCCHHHHHHHHHHHHHHHHHHHHCC---CccccCcccceEEecCCCeEEECccccceeccc
Confidence            888886543          3899999999999999999999998   9999999999999854 7999999999965421


Q ss_pred             C----------------------CCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhc
Q 047629          484 D----------------------VMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWM  541 (615)
Q Consensus       484 ~----------------------~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  541 (615)
                      .                      .+.++|||||||++|||++|+.||....    .     +             ...  
T Consensus       164 ~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~----~-----i-------------~~~--  219 (273)
T d1xwsa_         164 TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE----E-----I-------------IRG--  219 (273)
T ss_dssp             SCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH----H-----H-------------HHC--
T ss_pred             ccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCch----H-----H-------------hhc--
Confidence            1                      2346899999999999999999986421    0     0             000  


Q ss_pred             CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          542 DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       542 dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ...+...+    ...+.+|+.+||+.||++|||++|++++
T Consensus       220 ~~~~~~~~----s~~~~~li~~~L~~dp~~R~s~~eil~h  255 (273)
T d1xwsa_         220 QVFFRQRV----SSECQHLIRWCLALRPSDRPTFEEIQNH  255 (273)
T ss_dssp             CCCCSSCC----CHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             ccCCCCCC----CHHHHHHHHHHccCCHhHCcCHHHHhcC
Confidence            11122223    3457899999999999999999999874

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=311.13  Aligned_cols=226  Identities=24%  Similarity=0.287  Sum_probs=161.0

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---HHHHHHHHHHhcCCCCcccEEEEEEcC-----CCcEEEEEeecCCCCHHHhhccC
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---DVTEELRILQRINHANLVKLMGVSSDS-----QGNRFLVYEYAENGSLDKWLHPK  412 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---~~~~Ei~~l~~l~H~niv~l~g~~~~~-----~~~~~lV~E~~~~GsL~~~L~~~  412 (615)
                      |.||+|..  +|+.||||+++.   ...+|+++|++++|+||+++++++...     ...+++||||+++|.+.......
T Consensus        34 g~Vy~a~~~~~~~~vAiK~i~~~~~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey~~~~~~~~l~~~~  113 (350)
T d1q5ka_          34 GVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYS  113 (350)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECCSSSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEEEECCSEEHHHHHHHHH
T ss_pred             eEEEEEEECCCCCEEEEEEECccchHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEEEeccCCccHHHHHhhh
Confidence            58999998  689999999864   356899999999999999999998532     12378999999876433333211


Q ss_pred             CCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC-cEEEeecCCCCCCC---------
Q 047629          413 SKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF-KAKIANFSLAAPAT---------  482 (615)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-~~kl~DFGla~~~~---------  482 (615)
                      ...       ..+++.++..++.||+.||+|||+++   |+||||||+|||++.++ .+||+|||+++...         
T Consensus       114 ~~~-------~~l~~~~~~~i~~qil~aL~yLH~~~---IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~~  183 (350)
T d1q5ka_         114 RAK-------QTLPVIYVKLYMYQLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYI  183 (350)
T ss_dssp             HTT-------CCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECTTTCCEEECCCTTCEECCTTSCCCSCC
T ss_pred             hcc-------CCCCHHHHHHHHHHHHHHHHHHHhcC---CcccCCCcceEEEecCCCceeEecccchhhccCCccccccc
Confidence            110       13999999999999999999999998   99999999999999774 89999999986431         


Q ss_pred             --------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhH--HHHHHHHHhhhcCCcCC
Q 047629          483 --------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV--EEKREERLRNWMDPNLE  546 (615)
Q Consensus       483 --------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~dp~l~  546 (615)
                                    ..++.++||||+||++|||++|+.||......+.  +.. +...+..  ............+..+.
T Consensus       184 gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~--l~~-i~~~~g~~~~~~~~~~~~~~~~~~~~  260 (350)
T d1q5ka_         184 CSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQ--LVE-IIKVLGTPTREQIREMNPNYTEFKFP  260 (350)
T ss_dssp             SCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHH--HHH-HHHHHCCCCHHHHHHHCC---CCCCC
T ss_pred             ccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHHH--HHH-HHHHhCCChHHhhhhhccchhhcccc
Confidence                          1256789999999999999999999976543221  111 1111110  00001111111111110


Q ss_pred             --------CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          547 --------SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       547 --------~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                              ..........+.+|+.+|++.||++|||+.|++++
T Consensus       261 ~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  303 (350)
T d1q5ka_         261 QIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAH  303 (350)
T ss_dssp             CCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             ccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                    11112234467899999999999999999999874

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=302.98  Aligned_cols=222  Identities=20%  Similarity=0.294  Sum_probs=161.9

Q ss_pred             ceEEEEEE---CCeEEEEEEcc---------HHHHHHHHHHHhc---CCCCcccEEEEEEc----CCCcEEEEEeecCCC
Q 047629          343 KSVYRATI---DGKVLAVKKIK---------EDVTEELRILQRI---NHANLVKLMGVSSD----SQGNRFLVYEYAENG  403 (615)
Q Consensus       343 ~~Vy~~~~---~g~~vAvK~~~---------~~~~~Ei~~l~~l---~H~niv~l~g~~~~----~~~~~~lV~E~~~~G  403 (615)
                      |.||+|..   +++.||||+++         ..+.+|+++|+.+   +||||+++++++..    .+...++++||+++|
T Consensus        21 g~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~~~~~~~~~e~~~~~  100 (305)
T d1blxa_          21 GKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQD  100 (305)
T ss_dssp             EEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEEEEECCSCB
T ss_pred             eEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccccCceEEEEEEeccCC
Confidence            58999986   36789999985         2467888887776   89999999998853    223579999999988


Q ss_pred             CHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-
Q 047629          404 SLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-  482 (615)
Q Consensus       404 sL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-  482 (615)
                      ++.........         .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++... 
T Consensus       101 ~~~~~~~~~~~---------~~~~~~~~~~~~qi~~aL~yLH~~~---ivHrDiKp~NILi~~~~~~kl~dfg~~~~~~~  168 (305)
T d1blxa_         101 LTTYLDKVPEP---------GVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARIYSF  168 (305)
T ss_dssp             HHHHHHHSCTT---------CSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECSCCSCCCCCG
T ss_pred             chhhhhhccCC---------CCCHHHHHHHHHHHHHHHHHHHhCC---EEecCCCccEEEEcCCCCeeecchhhhhhhcc
Confidence            77655544332         3899999999999999999999998   9999999999999999999999999986531 


Q ss_pred             ---------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhh--
Q 047629          483 ---------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRN--  539 (615)
Q Consensus       483 ---------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--  539 (615)
                                           ..++.++||||+||++|||++|+.||......+.   ...+........  ......  
T Consensus       169 ~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~---~~~i~~~~~~~~--~~~~~~~~  243 (305)
T d1blxa_         169 QMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQ---LGKILDVIGLPG--EEDWPRDV  243 (305)
T ss_dssp             GGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH---HHHHHHHHCCCC--GGGSCTTC
T ss_pred             cccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHHH---HHHHHHhhCCCc--hhcccccc
Confidence                                 2367899999999999999999999976442111   111111110000  000000  


Q ss_pred             -----hc---CCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          540 -----WM---DPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       540 -----~~---dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                           ..   .+.....+.......+.+|+.+|++.||++|||+.|++++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~H  293 (305)
T d1blxa_         244 ALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSH  293 (305)
T ss_dssp             SSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             cchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence                 00   0000011222334567899999999999999999999875

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=294.91  Aligned_cols=223  Identities=17%  Similarity=0.236  Sum_probs=166.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhcc
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHP  411 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~  411 (615)
                      |.||+|+.  +|+.||||+++         ..+.+|+.+|++++|+||+++++++.+.+ ..++|+|++.+++|..++..
T Consensus        16 g~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~-~~~iv~~~~~~~~l~~~~~~   94 (292)
T d1unla_          16 GTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDK-KLTLVFEFCDQDLKKYFDSC   94 (292)
T ss_dssp             SEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS-EEEEEEECCSEEHHHHHHHT
T ss_pred             eEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeecccccccc-ceeEEeeecccccccccccc
Confidence            58999997  78999999974         35779999999999999999999998654 78999999999999888765


Q ss_pred             CCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--------
Q 047629          412 KSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--------  483 (615)
Q Consensus       412 ~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--------  483 (615)
                      ..          .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||.++....        
T Consensus        95 ~~----------~~~~~~~~~~~~q~~~aL~~lH~~~---IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~~~~~  161 (292)
T d1unla_          95 NG----------DLDPEIVKSFLFQLLKGLGFCHSRN---VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAE  161 (292)
T ss_dssp             TT----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSCCCSC
T ss_pred             cc----------ccchhHHHHHHHHHHHHHHHhhcCC---EeeecccCcccccccCCceeeeecchhhcccCCCccceee
Confidence            44          2889999999999999999999998   99999999999999999999999999964321        


Q ss_pred             ----------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHH-HHHHHhhhcCC---
Q 047629          484 ----------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEK-REERLRNWMDP---  543 (615)
Q Consensus       484 ----------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~dp---  543 (615)
                                      ..+.++|||||||++|||++|+.|+....+...  ....+......... ......+..+.   
T Consensus       162 ~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (292)
T d1unla_         162 VVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDD--QLKRIFRLLGTPTEEQWPSMTKLPDYKPY  239 (292)
T ss_dssp             CSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHH--HHHHHHHHHCCCCTTTCTTGGGSTTCCCC
T ss_pred             ccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHH--HHHHHHhhcCCCChhhhhhhhhccccccc
Confidence                            146789999999999999999999765443211  11111111100000 00000000000   


Q ss_pred             -cC-----CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          544 -NL-----ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       544 -~l-----~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                       ..     ...........+.+|+.+|++.||++|||++|++++
T Consensus       240 ~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~H  283 (292)
T d1unla_         240 PMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQH  283 (292)
T ss_dssp             CCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             ccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence             00     011222334467899999999999999999998764

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-34  Score=300.80  Aligned_cols=228  Identities=20%  Similarity=0.336  Sum_probs=165.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcCC-----CcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDSQ-----GNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~-----~~~~lV~E~~~~GsL~  406 (615)
                      |.||+|..  +|+.||||+++         +.+.+|+++|++++|||||++++++...+     ...++||||+ +++|.
T Consensus        32 g~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~l~  110 (346)
T d1cm8a_          32 GAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLG  110 (346)
T ss_dssp             -CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHH
T ss_pred             eEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccceEEEEEecc-cccHH
Confidence            58999997  69999999985         24678999999999999999999986533     2469999999 45788


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC---
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN---  483 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~---  483 (615)
                      .+++..           .|++..+..++.|++.||+|||+++   |+||||||+|||++.++.+|++|||+|+....   
T Consensus       111 ~~~~~~-----------~l~~~~~~~~~~qi~~aL~~LH~~~---IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~~~  176 (346)
T d1cm8a_         111 KLMKHE-----------KLGEDRIQFLVYQMLKGLRYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLARQADSEMT  176 (346)
T ss_dssp             HHHHHC-----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECCSSCC
T ss_pred             HHHHhc-----------cccHHHHHHHHHHHHHHHHHHHhCC---CcccccCcchhhcccccccccccccceeccCCccc
Confidence            877543           2899999999999999999999998   99999999999999999999999999965422   


Q ss_pred             ------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHH--------HhHHH--HHHH
Q 047629          484 ------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREV--------LKVEE--KREE  535 (615)
Q Consensus       484 ------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~--------~~~~~--~~~~  535 (615)
                                        ..+.++||||+||++|||++|+.||..................        .....  ....
T Consensus       177 ~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (346)
T d1cm8a_         177 GYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMK  256 (346)
T ss_dssp             SSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHH
T ss_pred             cccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhc
Confidence                              2467899999999999999999999765432211111000000        00000  0000


Q ss_pred             HHhhhcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH--HHhcc
Q 047629          536 RLRNWMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN--LSVLT  586 (615)
Q Consensus       536 ~~~~~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~--L~~l~  586 (615)
                      .+.+.....+. .........+.+|+.+|+..||.+|||++|++++  ++.+.
T Consensus       257 ~~~~~~~~~~~-~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~~  308 (346)
T d1cm8a_         257 GLPELEKKDFA-SILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLH  308 (346)
T ss_dssp             HSCCCCCCCGG-GTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC
T ss_pred             cCCcccccchH-HhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhCcCC
Confidence            01111111111 1112223457899999999999999999999986  44443

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-34  Score=298.61  Aligned_cols=222  Identities=20%  Similarity=0.263  Sum_probs=161.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc--------HHHHHHHHHHHhcCCCCcccEEEEEEcCCC---cEEEEEeecCCCCHHHhh
Q 047629          343 KSVYRATI--DGKVLAVKKIK--------EDVTEELRILQRINHANLVKLMGVSSDSQG---NRFLVYEYAENGSLDKWL  409 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~--------~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~---~~~lV~E~~~~GsL~~~L  409 (615)
                      |.||+|..  +|+.||||+++        +.+.+|+++|++++||||+++++++.....   ..+++++|+.+|+|.+++
T Consensus        22 g~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~l~~~~~~g~L~~~l  101 (345)
T d1pmea_          22 GMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLL  101 (345)
T ss_dssp             CCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEECCCEEHHHHH
T ss_pred             eEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEEEEEeecCCchhhhh
Confidence            58999987  69999999985        246789999999999999999999864321   234555667799999999


Q ss_pred             ccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC-------
Q 047629          410 HPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~-------  482 (615)
                      ...           .+++..+..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++...       
T Consensus       102 ~~~-----------~l~~~~i~~i~~qil~al~yLH~~~---iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~~  167 (345)
T d1pmea_         102 KTQ-----------HLSNDHICYFLYQILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTG  167 (345)
T ss_dssp             HHC-----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCC
T ss_pred             hcC-----------CCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCCCcceEEECCCCCEEEcccCceeeccCCCccce
Confidence            653           2899999999999999999999998   9999999999999999999999999985321       


Q ss_pred             --------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHH-------HHHH
Q 047629          483 --------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE-------KREE  535 (615)
Q Consensus       483 --------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~  535 (615)
                                          ..+++++||||+||++|||++|+.||......+................       ....
T Consensus       168 ~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (345)
T d1pmea_         168 FLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARN  247 (345)
T ss_dssp             TTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHH
T ss_pred             eeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhc
Confidence                                1145689999999999999999999976543221111100000000000       0000


Q ss_pred             HHhhhcCCcCCCCCCh-----HHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          536 RLRNWMDPNLESFYPI-----DGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       536 ~~~~~~dp~l~~~~~~-----~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ....  .+.. ...+.     ....++.+|+..|++.||.+|||+.|++++
T Consensus       248 ~~~~--~~~~-~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~h  295 (345)
T d1pmea_         248 YLLS--LPHK-NKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  295 (345)
T ss_dssp             HHHT--SCCC-CCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             cccc--CCcc-CCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            0000  1111 11111     122357899999999999999999999975

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-34  Score=293.44  Aligned_cols=221  Identities=21%  Similarity=0.307  Sum_probs=160.2

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcC-------CCcEEEEEeecCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDS-------QGNRFLVYEYAENGS  404 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~-------~~~~~lV~E~~~~Gs  404 (615)
                      |.||+|..  +|+.||||+++         ..+.+|+++|++++|+||+++++++...       ++..++||||++++.
T Consensus        24 g~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~  103 (318)
T d3blha1          24 GEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDL  103 (318)
T ss_dssp             SEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC----------CEEEEEECCCEEH
T ss_pred             eEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccccCceEEEEEeccCCCc
Confidence            58999997  68999999874         3477999999999999999999987542       235799999999877


Q ss_pred             HHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC--
Q 047629          405 LDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT--  482 (615)
Q Consensus       405 L~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~--  482 (615)
                      +..+.....          .++...+..++.|++.||.|||+++   |+||||||+|||++.++.+|++|||+++...  
T Consensus       104 ~~~~~~~~~----------~~~~~~~~~i~~qil~~l~~lH~~~---ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~~~  170 (318)
T d3blha1         104 AGLLSNVLV----------KFTLSEIKRVMQMLLNGLYYIHRNK---ILHRDMKAANVLITRDGVLKLADFGLARAFSLA  170 (318)
T ss_dssp             HHHHTCTTC----------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCTTCEECCC-
T ss_pred             cchhhhccc----------ccccHHHHHHHHHHHHHHHHhccCC---EEecCcCchheeecCCCcEEeeecceeeecccc
Confidence            766554433          2888999999999999999999998   9999999999999999999999999985321  


Q ss_pred             --------------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHH
Q 047629          483 --------------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREER  536 (615)
Q Consensus       483 --------------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  536 (615)
                                                ..+++++|||||||++|||++|+.||....+.+..   ..+........  ...
T Consensus       171 ~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~---~~i~~~~~~~~--~~~  245 (318)
T d3blha1         171 KNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQL---ALISQLCGSIT--PEV  245 (318)
T ss_dssp             ----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH---HHHHHHHCCCC--TTT
T ss_pred             cccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHH---HHHHHhcCCCC--hhh
Confidence                                      12567999999999999999999999754421111   11111110000  000


Q ss_pred             Hhhh--------cCCcCCCCCChH-------HHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          537 LRNW--------MDPNLESFYPID-------GALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       537 ~~~~--------~dp~l~~~~~~~-------~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ....        .........+..       ....+.+|+.+||+.||++|||++|++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~H  305 (318)
T d3blha1         246 WPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  305 (318)
T ss_dssp             STTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             ccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHcC
Confidence            0000        000000001111       12246789999999999999999999875

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=1.5e-33  Score=292.12  Aligned_cols=221  Identities=19%  Similarity=0.275  Sum_probs=163.4

Q ss_pred             ceEEEEEE--CCeEEEEEEcc----HHHHHHHHHHHhcC-CCCcccEEEEEEcC-CCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK----EDVTEELRILQRIN-HANLVKLMGVSSDS-QGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~----~~~~~Ei~~l~~l~-H~niv~l~g~~~~~-~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      |.||+|+.  +|+.||||+++    +.+.+|+++|++++ ||||+++++++... ....++||||+++|+|.++..    
T Consensus        49 g~V~~a~~~~~~~~vAiK~i~~~~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~----  124 (328)
T d3bqca1          49 SEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ----  124 (328)
T ss_dssp             EEEEEEEETTTTEEEEEEEECSSCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEECCCSCBGGGTTT----
T ss_pred             eEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEeecCCCcHHHHhc----
Confidence            58999997  69999999986    46789999999995 99999999998643 345899999999999987642    


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCC-cEEEeecCCCCCCCC----------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRF-KAKIANFSLAAPATN----------  483 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~-~~kl~DFGla~~~~~----------  483 (615)
                               .+++..+..++.||+.||+|||+++   |+||||||+|||++.++ .+||+|||+|+....          
T Consensus       125 ---------~l~e~~i~~i~~qil~aL~~LH~~g---IvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~~~~~~~t  192 (328)
T d3bqca1         125 ---------TLTDYDIRFYMYEILKALDYCHSMG---IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVAS  192 (328)
T ss_dssp             ---------SCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTTEEEECCGGGCEECCTTCCCCSCCSC
T ss_pred             ---------CCCHHHHHHHHHHHHHHHHHHhhcc---cccccccccceEEcCCCCeeeecccccceeccCCCcccccccC
Confidence                     2889999999999999999999998   99999999999998654 689999999864321          


Q ss_pred             -------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHH--HHHhhhcCCcC---
Q 047629          484 -------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKRE--ERLRNWMDPNL---  545 (615)
Q Consensus       484 -------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~dp~l---  545 (615)
                                   .++.++||||+||+++||++|+.||........  ....+...+.......  .......++..   
T Consensus       193 ~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~--~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  270 (328)
T d3bqca1         193 RYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYD--QLVRIAKVLGTEDLYDYIDKYNIELDPRFNDI  270 (328)
T ss_dssp             GGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHH--HHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGT
T ss_pred             ccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHH--HHHHHHHHHCCchhhhhhhhcccccCcccchh
Confidence                         146789999999999999999999976543221  1111222221111000  00000000000   


Q ss_pred             -------------CCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          546 -------------ESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       546 -------------~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                                   ...........+.+|+.+|++.||++|||++|++++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~H  319 (328)
T d3bqca1         271 LGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEH  319 (328)
T ss_dssp             CCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             cccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                         001111233467899999999999999999999863

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1e-33  Score=289.36  Aligned_cols=218  Identities=17%  Similarity=0.208  Sum_probs=161.6

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-----HHHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-----EDVTEELRILQRINHANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSKS  415 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-----~~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~~  415 (615)
                      |.||+|..  +|+.||||.++     ..+..|++++++++|+|++..++.+....+..++||||+. |+|.+.+..... 
T Consensus        21 G~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~~-~~l~~~~~~~~~-   98 (299)
T d1ckia_          21 GDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLG-PSLEDLFNFCSR-   98 (299)
T ss_dssp             SEEEEEEETTTTEEEEEEEEESCTTSCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECCC-CBHHHHHHHTTT-
T ss_pred             cEEEEEEECCCCCEEEEEEEchhccCHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEcC-CchhhhhhhccC-
Confidence            58999997  68999999875     3588899999999888877776666555557899999995 567666654433 


Q ss_pred             CCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC---CCcEEEeecCCCCCCCC---------
Q 047629          416 SSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS---RFKAKIANFSLAAPATN---------  483 (615)
Q Consensus       416 ~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~---~~~~kl~DFGla~~~~~---------  483 (615)
                              .+++..+..++.|++.||+|||+++   |+||||||+|||++.   +..+|++|||+|+....         
T Consensus        99 --------~~~~~~~~~~~~qi~~~l~~lH~~~---iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~  167 (299)
T d1ckia_          99 --------KFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPY  167 (299)
T ss_dssp             --------CCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCC
T ss_pred             --------CCcHHHHHHHHHHHHHHHHHHHHCC---eeeccCCHhhccccccCCCceeeeeccCcceeccccccccceec
Confidence                    3899999999999999999999998   999999999998764   56799999999964311         


Q ss_pred             ---------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhhhcC
Q 047629          484 ---------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRNWMD  542 (615)
Q Consensus       484 ---------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d  542 (615)
                                           .++.++|||||||++|||++|+.||................         ...... -.
T Consensus       168 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~---------~~~~~~-~~  237 (299)
T d1ckia_         168 RENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERIS---------EKKMST-PI  237 (299)
T ss_dssp             CBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHH---------HHHHHS-CH
T ss_pred             cccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhh---------cccCCC-Ch
Confidence                                 14568999999999999999999997654322211111000         000000 00


Q ss_pred             CcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhccc
Q 047629          543 PNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQ  587 (615)
Q Consensus       543 p~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~  587 (615)
                      +.+...+    +.++.+++..||+.||++||++.++.+.|+.+..
T Consensus       238 ~~~~~~~----p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~~~  278 (299)
T d1ckia_         238 EVLCKGY----PSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH  278 (299)
T ss_dssp             HHHTTTS----CHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHH
T ss_pred             hHhccCC----CHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHH
Confidence            0111122    3457899999999999999999999988886643

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-34  Score=297.62  Aligned_cols=207  Identities=23%  Similarity=0.318  Sum_probs=163.9

Q ss_pred             ceEEEEEE-----CCeEEEEEEcc-----------HHHHHHHHHHHhcCC-CCcccEEEEEEcCCCcEEEEEeecCCCCH
Q 047629          343 KSVYRATI-----DGKVLAVKKIK-----------EDVTEELRILQRINH-ANLVKLMGVSSDSQGNRFLVYEYAENGSL  405 (615)
Q Consensus       343 ~~Vy~~~~-----~g~~vAvK~~~-----------~~~~~Ei~~l~~l~H-~niv~l~g~~~~~~~~~~lV~E~~~~GsL  405 (615)
                      |.||+|..     +|+.||||.++           +.+.+|+++|++++| |||+++++++.+. ...+++|||+.+|+|
T Consensus        38 g~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~-~~~~~v~e~~~~~~L  116 (322)
T d1vzoa_          38 GKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTE-TKLHLILDYINGGEL  116 (322)
T ss_dssp             EEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEET-TEEEEEECCCCSCBH
T ss_pred             eEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccC-CceeeeeecccccHH
Confidence            58999975     47899999874           236689999999966 8999999998765 479999999999999


Q ss_pred             HHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC--
Q 047629          406 DKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN--  483 (615)
Q Consensus       406 ~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~--  483 (615)
                      .+++.....          ++......++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++....  
T Consensus       117 ~~~i~~~~~----------~~e~~~~~~~~Qi~~al~~lH~~~---ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~~~  183 (322)
T d1vzoa_         117 FTHLSQRER----------FTEHEVQIYVGEIVLALEHLHKLG---IIYRDIKLENILLDSNGHVVLTDFGLSKEFVADE  183 (322)
T ss_dssp             HHHHHHHSC----------CCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEESCSSEEEECCGGG
T ss_pred             HHHHHhccc----------ccHHHHHHHHHHHHHHHHHhhcCC---EEeccCCccceeecCCCCEEEeeccchhhhcccc
Confidence            999976553          678889999999999999999998   99999999999999999999999999864311  


Q ss_pred             ------------------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhh
Q 047629          484 ------------------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRN  539 (615)
Q Consensus       484 ------------------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  539 (615)
                                              .++.++|||||||+||||++|+.||......+....   +.         ..... 
T Consensus       184 ~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~---i~---------~~~~~-  250 (322)
T d1vzoa_         184 TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAE---IS---------RRILK-  250 (322)
T ss_dssp             GGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHH---HH---------HHHHH-
T ss_pred             cccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHH---HH---------Hhccc-
Confidence                                    145689999999999999999999976543322111   00         00111 


Q ss_pred             hcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCC-----HHHHHHH
Q 047629          540 WMDPNLESFYPIDGALSLATLARACTMDKSLSRPN-----MAEVVFN  581 (615)
Q Consensus       540 ~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPs-----m~ev~~~  581 (615)
                       ..+    .++.+....+.+++.+||+.||++|||     ++|++++
T Consensus       251 -~~~----~~~~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~H  292 (322)
T d1vzoa_         251 -SEP----PYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH  292 (322)
T ss_dssp             -CCC----CCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred             -CCC----CCcccCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHcC
Confidence             111    233445567899999999999999995     7888753

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-33  Score=288.96  Aligned_cols=220  Identities=22%  Similarity=0.305  Sum_probs=159.8

Q ss_pred             ceEEEEEE--CCeEEEEEEcc---------HHHHHHHHHHHhcCCCCcccEEEEEEcC----CCcEEEEEeecCCCCHHH
Q 047629          343 KSVYRATI--DGKVLAVKKIK---------EDVTEELRILQRINHANLVKLMGVSSDS----QGNRFLVYEYAENGSLDK  407 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~---------~~~~~Ei~~l~~l~H~niv~l~g~~~~~----~~~~~lV~E~~~~GsL~~  407 (615)
                      |.||+|..  +|+.||||+++         +.+.+|+++|++++|+|+|++++++...    +...+++++|+.+|+|.+
T Consensus        32 g~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~~~~i~~~~~gg~L~~  111 (348)
T d2gfsa1          32 GSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNN  111 (348)
T ss_dssp             SSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHH
T ss_pred             eEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCceEEEEEeecCCchhh
Confidence            58999986  79999999985         2467899999999999999999987532    223466778888999999


Q ss_pred             hhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCC----
Q 047629          408 WLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATN----  483 (615)
Q Consensus       408 ~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~----  483 (615)
                      ++...           .+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+|++|||++.....    
T Consensus       112 ~~~~~-----------~l~e~~~~~i~~qil~aL~~LH~~g---iiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~~~~~  177 (348)
T d2gfsa1         112 IVKCQ-----------KLTDDHVQFLIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTG  177 (348)
T ss_dssp             HHTTC-----------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECCC----CCTGGGSS
T ss_pred             hcccc-----------cccHHHHHHHHHHHHHHHHHHHhCC---CcccccCCccccccccccccccccchhcccCccccc
Confidence            99643           2899999999999999999999998   99999999999999999999999999865421    


Q ss_pred             -----------------CCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHH---------HHHHHH
Q 047629          484 -----------------DVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEE---------KREERL  537 (615)
Q Consensus       484 -----------------~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~  537 (615)
                                       ..+.++|||||||++|||++|+.||........   ...+........         ......
T Consensus       178 ~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~  254 (348)
T d2gfsa1         178 YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ---LKLILRLVGTPGAELLKKISSESARNY  254 (348)
T ss_dssp             SCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHH---HHHHHHHHCCCCHHHHTTCCCHHHHHH
T ss_pred             ccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHH---HHHHHHhcCCCChHHhhhccchhhhhh
Confidence                             246799999999999999999999976542211   111111110000         000000


Q ss_pred             hhhcCCcCCCCCC-----hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          538 RNWMDPNLESFYP-----IDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       538 ~~~~dp~l~~~~~-----~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      .... +.. ...+     ......+.+|+.+|++.||.+|||++|++++
T Consensus       255 ~~~~-~~~-~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~H  301 (348)
T d2gfsa1         255 IQSL-TQM-PKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  301 (348)
T ss_dssp             HTTS-CCC-CCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hhhc-ccC-CCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhcC
Confidence            0000 000 0001     1123457899999999999999999999874

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=2.3e-32  Score=278.64  Aligned_cols=218  Identities=16%  Similarity=0.180  Sum_probs=167.9

Q ss_pred             ceEEEEEE--CCeEEEEEEcc-----HHHHHHHHHHHhcCC-CCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK-----EDVTEELRILQRINH-ANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~-----~~~~~Ei~~l~~l~H-~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      |.||+|+.  +|+.||||.++     ..+.+|++++..++| +|++.+++++.+ ++..++||||+ +|+|.+++.....
T Consensus        19 G~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~-~~~~~~vme~~-~~~l~~~~~~~~~   96 (293)
T d1csna_          19 GVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQE-GLHNVLVIDLL-GPSLEDLLDLCGR   96 (293)
T ss_dssp             CEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEE-TTEEEEEEECC-CCBHHHHHHHTTT
T ss_pred             eEEEEEEECCCCCEEEEEEEccccCcHHHHHHHHHHHHhcCCCCCCEEEEEeec-CCccEEEEEec-CCCHHHHHHhhcc
Confidence            58999997  68999999875     347889999999965 899999998765 44789999999 6899999876543


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCC-----CCcEEEeecCCCCCCC-------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDS-----RFKAKIANFSLAAPAT-------  482 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~-----~~~~kl~DFGla~~~~-------  482 (615)
                               .+++.++..++.|++.||+|||+++   |+||||||+|||++.     ++.+||+|||+|+...       
T Consensus        97 ---------~~~~~~~~~i~~q~~~~l~~lH~~g---iiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~  164 (293)
T d1csna_          97 ---------KFSVKTVAMAAKQMLARVQSIHEKS---LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQH  164 (293)
T ss_dssp             ---------CCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCB
T ss_pred             ---------chhhHHHHHHHHHHHHHHHHHHHCC---ceeccCCccceeecCcccccCCceEEcccceeEEcccCccccc
Confidence                     3899999999999999999999998   999999999999975     5689999999996431       


Q ss_pred             -----------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhHHHHHHHHHhh
Q 047629          483 -----------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKVEEKREERLRN  539 (615)
Q Consensus       483 -----------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  539 (615)
                                             ..++.++|||||||++|||++|+.||..............+....     ......+
T Consensus       165 ~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~-----~~~~~~~  239 (293)
T d1csna_         165 IPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKK-----QSTPLRE  239 (293)
T ss_dssp             CCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHH-----HHSCHHH
T ss_pred             eeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhcc-----CCCChHH
Confidence                                   114568999999999999999999998655433322211111110     0000111


Q ss_pred             hcCCcCCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHhcccc
Q 047629          540 WMDPNLESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFNLSVLTQS  588 (615)
Q Consensus       540 ~~dp~l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~L~~l~~~  588 (615)
                           +...+|    .++.+++..|++.+|++||+++.+.+.|+.+.+.
T Consensus       240 -----l~~~~p----~~l~~ii~~~~~~~~~~rP~y~~l~~~l~~~~~~  279 (293)
T d1csna_         240 -----LCAGFP----EEFYKYMHYARNLAFDATPDYDYLQGLFSKVLER  279 (293)
T ss_dssp             -----HTTTSC----HHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             -----hcCCCC----HHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHHH
Confidence                 112223    4578999999999999999999998888776543

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.2e-32  Score=285.13  Aligned_cols=220  Identities=20%  Similarity=0.251  Sum_probs=159.1

Q ss_pred             ceEEEEEE--CCeEEEEEEccH---------HHHHHHHHHHhcCCCCcccEEEEEEcC-----CCcEEEEEeecCCCCHH
Q 047629          343 KSVYRATI--DGKVLAVKKIKE---------DVTEELRILQRINHANLVKLMGVSSDS-----QGNRFLVYEYAENGSLD  406 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~~---------~~~~Ei~~l~~l~H~niv~l~g~~~~~-----~~~~~lV~E~~~~GsL~  406 (615)
                      |.||+|..  +|+.||||+++.         .+.+|+.+|++++|||||++++++...     ....|+||||+.+|.+ 
T Consensus        31 g~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~~~iv~Ey~~~~l~-  109 (355)
T d2b1pa1          31 GIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLC-  109 (355)
T ss_dssp             CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCSEEHH-
T ss_pred             eEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCceeEEEEeccchHHH-
Confidence            58999997  699999999852         367899999999999999999998532     2368999999976544 


Q ss_pred             HhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCC----
Q 047629          407 KWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPAT----  482 (615)
Q Consensus       407 ~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~----  482 (615)
                      +.+..            .+++..+..++.||+.||+|||+++   |+||||||+|||++.++.+|++|||+++...    
T Consensus       110 ~~~~~------------~~~~~~i~~~~~qil~gl~~LH~~g---iiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~~~  174 (355)
T d2b1pa1         110 QVIQM------------ELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM  174 (355)
T ss_dssp             HHHTS------------CCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCCCC---------
T ss_pred             Hhhhc------------CCCHHHHHHHHHHHHHHHHHhhhcc---cccccCCccccccccccceeeechhhhhccccccc
Confidence            44432            2889999999999999999999998   9999999999999999999999999875431    


Q ss_pred             ------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCChhHHHHHHHHHHHhH---------HHHHHH
Q 047629          483 ------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGKTAVLWKEIREVLKV---------EEKREE  535 (615)
Q Consensus       483 ------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~  535 (615)
                                        ..+++++||||+||+++||++|+.||........   ...+......         ......
T Consensus       175 ~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~  251 (355)
T d2b1pa1         175 MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQ---WNKVIEQLGTPCPEFMKKLQPTVRN  251 (355)
T ss_dssp             ------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHH---HHHHHHHHCCCCHHHHTTSCHHHHH
T ss_pred             cccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHHH---HHHHHHhccCCCHHHHHHhhhhHHH
Confidence                              2356799999999999999999999975432111   1111111000         000000


Q ss_pred             HHhhhc-----------CCcCC---CCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          536 RLRNWM-----------DPNLE---SFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       536 ~~~~~~-----------dp~l~---~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                      ......           .....   ..........+.+|+++|++.||++|||++|++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~H  311 (355)
T d2b1pa1         252 YVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  311 (355)
T ss_dssp             HHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             HhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence            001100           00000   01112345568899999999999999999999875

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.2e-28  Score=254.73  Aligned_cols=227  Identities=19%  Similarity=0.258  Sum_probs=154.0

Q ss_pred             ceEEEEEE--CCeEEEEEEcc------HHHHHHHHHHHhcC-----------CCCcccEEEEEEcC-CCcEEEEEeecCC
Q 047629          343 KSVYRATI--DGKVLAVKKIK------EDVTEELRILQRIN-----------HANLVKLMGVSSDS-QGNRFLVYEYAEN  402 (615)
Q Consensus       343 ~~Vy~~~~--~g~~vAvK~~~------~~~~~Ei~~l~~l~-----------H~niv~l~g~~~~~-~~~~~lV~E~~~~  402 (615)
                      |.||+|+.  +|+.||||+++      +.+.+|++++++++           |+||+++++++... ....+++++++..
T Consensus        27 g~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~  106 (362)
T d1q8ya_          27 STVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVL  106 (362)
T ss_dssp             EEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEECCC
T ss_pred             eEEEEEEECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccccceeeeeeeccc
Confidence            58999987  79999999986      34578999998875           57899999887532 2345677777655


Q ss_pred             CC-HHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHh-CCCCCeEecCCCCCceeeCCCC------cEEEee
Q 047629          403 GS-LDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHE-HAQPSIVHRDIRTNNIQLDSRF------KAKIAN  474 (615)
Q Consensus       403 Gs-L~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~-~~~~~ivHrDlk~~NILld~~~------~~kl~D  474 (615)
                      +. ..........        ..+++..+..++.||+.||+|||+ ++   |+||||||+|||++.++      .+|++|
T Consensus       107 ~~~~~~~~~~~~~--------~~~~~~~i~~i~~qil~al~~lh~~~~---IvHrDlKp~NIll~~~~~~~~~~~~kl~d  175 (362)
T d1q8ya_         107 GENLLALIKKYEH--------RGIPLIYVKQISKQLLLGLDYMHRRCG---IIHTDIKPENVLMEIVDSPENLIQIKIAD  175 (362)
T ss_dssp             CEEHHHHHHHTTT--------SCCCHHHHHHHHHHHHHHHHHHHHTTC---EECSCCSGGGEEEEEEETTTTEEEEEECC
T ss_pred             ccccccccccccc--------cCCcHHHHHHHHHHHHHHHHHHhhhcC---cccccCChhHeeeeccCcccccceeeEee
Confidence            44 3333332222        138899999999999999999998 66   99999999999998664      489999


Q ss_pred             cCCCCCCC--------------------CCCCCcccchhHHHHHHHHHcCCCCCCCCCCCh----hHHHHHHHHHHHhH-
Q 047629          475 FSLAAPAT--------------------NDVMPKFDVFAFGVVLLELLSGKKATRTTENGK----TAVLWKEIREVLKV-  529 (615)
Q Consensus       475 FGla~~~~--------------------~~~~~k~DV~SfGvvl~ElltG~~p~~~~~~~~----~~~l~~~~~~~~~~-  529 (615)
                      ||.++...                    ..++.++||||+||+++||++|+.||.......    ...+...+ ..+.. 
T Consensus       176 fg~s~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~-~~lg~~  254 (362)
T d1q8ya_         176 LGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQII-ELLGEL  254 (362)
T ss_dssp             CTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHH-HHHCSC
T ss_pred             cccccccccccccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHH-HHhCCC
Confidence            99985431                    225678999999999999999999987543211    11111111 11100 


Q ss_pred             --HHHHH-HHHhhhcCC-----c--------------CCCCCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 047629          530 --EEKRE-ERLRNWMDP-----N--------------LESFYPIDGALSLATLARACTMDKSLSRPNMAEVVFN  581 (615)
Q Consensus       530 --~~~~~-~~~~~~~dp-----~--------------l~~~~~~~~~~~l~~l~~~C~~~dP~~RPsm~ev~~~  581 (615)
                        +.... .......+.     .              ............+.+|+.+|++.||.+|||++|++++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~H  328 (362)
T d1q8ya_         255 PSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNH  328 (362)
T ss_dssp             CHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTC
T ss_pred             CHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence              00000 000111110     0              0122345667789999999999999999999999875

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.76  E-value=1.1e-18  Score=164.99  Aligned_cols=114  Identities=17%  Similarity=0.174  Sum_probs=92.0

Q ss_pred             ceEEEEEE-CCeEEEEEEccH-------------------------HHHHHHHHHHhcCCCCcccEEEEEEcCCCcEEEE
Q 047629          343 KSVYRATI-DGKVLAVKKIKE-------------------------DVTEELRILQRINHANLVKLMGVSSDSQGNRFLV  396 (615)
Q Consensus       343 ~~Vy~~~~-~g~~vAvK~~~~-------------------------~~~~Ei~~l~~l~H~niv~l~g~~~~~~~~~~lV  396 (615)
                      |.||+|.. +|+.||||.++.                         ....|...+.+++|.+++..+++.     ..+++
T Consensus        14 g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~-----~~~lv   88 (191)
T d1zara2          14 SAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWE-----GNAVL   88 (191)
T ss_dssp             EEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEE-----TTEEE
T ss_pred             eEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEec-----CCEEE
Confidence            48999987 899999997531                         134588899999999999988752     23799


Q ss_pred             EeecCCCCHHHhhccCCCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCceeeCCCCcEEEeecC
Q 047629          397 YEYAENGSLDKWLHPKSKSSSSSGSVIFLTWSQRLRVALDVANGLQYMHEHAQPSIVHRDIRTNNIQLDSRFKAKIANFS  476 (615)
Q Consensus       397 ~E~~~~GsL~~~L~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~~~~~~ivHrDlk~~NILld~~~~~kl~DFG  476 (615)
                      |||++++.+.+                 +++....+++.|++.+|.|||+++   |+||||||+|||++++ .++|.|||
T Consensus        89 me~~~~~~~~~-----------------l~~~~~~~i~~ql~~~l~~lH~~g---iiHrDiKP~NILv~~~-~~~liDFG  147 (191)
T d1zara2          89 MELIDAKELYR-----------------VRVENPDEVLDMILEEVAKFYHRG---IVHGDLSQYNVLVSEE-GIWIIDFP  147 (191)
T ss_dssp             EECCCCEEGGG-----------------CCCSCHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEEETT-EEEECCCT
T ss_pred             EEeeccccccc-----------------hhhHHHHHHHHHHHHHHHHHhhCC---EEEccCChhheeeeCC-CEEEEECC
Confidence            99998765533                 223334678999999999999998   9999999999999865 58999999


Q ss_pred             CCCCCC
Q 047629          477 LAAPAT  482 (615)
Q Consensus       477 la~~~~  482 (615)
                      +|....
T Consensus       148 ~a~~~~  153 (191)
T d1zara2         148 QSVEVG  153 (191)
T ss_dssp             TCEETT
T ss_pred             CcccCC
Confidence            997654

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.81  E-value=7.3e-05  Score=71.50  Aligned_cols=136  Identities=13%  Similarity=0.177  Sum_probs=88.5

Q ss_pred             ceEEEEEECCeEEEEEEccH-------HHHHHHHHHHhcC-CCCcccEEEEEEcCCCcEEEEEeecCCCCHHHhhccCCC
Q 047629          343 KSVYRATIDGKVLAVKKIKE-------DVTEELRILQRIN-HANLVKLMGVSSDSQGNRFLVYEYAENGSLDKWLHPKSK  414 (615)
Q Consensus       343 ~~Vy~~~~~g~~vAvK~~~~-------~~~~Ei~~l~~l~-H~niv~l~g~~~~~~~~~~lV~E~~~~GsL~~~L~~~~~  414 (615)
                      ..||+...+++.+.+|+...       .+.+|...+..+. +--+-+++.+..+ ++..++||+++++.++.+...... 
T Consensus        28 ~~v~rv~~~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~-~~~~~lv~~~l~G~~~~~~~~~~~-  105 (263)
T d1j7la_          28 AKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERH-DGWSNLLMSEADGVLCSEEYEDEQ-  105 (263)
T ss_dssp             SEEEEEECSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEE-TTEEEEEEECCSSEEHHHHTTTCS-
T ss_pred             CcEEEEEeCCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEec-CCceEEEEEecccccccccccccc-
Confidence            37999887888888998753       3678999988874 3335577777654 457899999999888765432211 


Q ss_pred             CCCCCCcccccCHHHHHHHHHHHHHHHHHHHh------------------------------------------------
Q 047629          415 SSSSSGSVIFLTWSQRLRVALDVANGLQYMHE------------------------------------------------  446 (615)
Q Consensus       415 ~~~~~~~~~~l~~~~~~~i~~~ia~gL~yLH~------------------------------------------------  446 (615)
                                 .   ...++.++++.+..||+                                                
T Consensus       106 -----------~---~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (263)
T d1j7la_         106 -----------S---PEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELY  171 (263)
T ss_dssp             -----------C---HHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGGGSTTCSCSSHHHHH
T ss_pred             -----------c---HHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhhcccccccchHHHHHH
Confidence                       1   11223334444444442                                                


Q ss_pred             -----C---CCCCeEecCCCCCceeeCCCCcEEEeecCCCCCCCCCCCCcccchhHHHHHHHH
Q 047629          447 -----H---AQPSIVHRDIRTNNIQLDSRFKAKIANFSLAAPATNDVMPKFDVFAFGVVLLEL  501 (615)
Q Consensus       447 -----~---~~~~ivHrDlk~~NILld~~~~~kl~DFGla~~~~~~~~~k~DV~SfGvvl~El  501 (615)
                           .   ..+.++|+|+.+.|||++++...-|.||+.+.....       .|-++.+++.+
T Consensus       172 ~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~~g~~-------~~Dla~~~~~~  227 (263)
T d1j7la_         172 DFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADK-------WYDIAFCVRSI  227 (263)
T ss_dssp             HHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEEEEH-------HHHHHHHHHHH
T ss_pred             HHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhcccCCH-------HHHHHHHHHHh
Confidence                 1   122489999999999999876667999997654321       23455555554

>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Hypothetical protein YkuD, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.46  E-value=2.7e-05  Score=54.23  Aligned_cols=45  Identities=20%  Similarity=0.394  Sum_probs=39.6

Q ss_pred             eeecccCCCCCCHHHHHHhhCCChHHHHhhcCCCCCCCCCCCCccEEee
Q 047629           45 VAYFAQSPEFLDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVP   93 (615)
Q Consensus        45 ~~y~~~~~~~~~l~~i~~lf~~~~~~i~~~n~~~~~~~~~~~~~~~~vP   93 (615)
                      +.|+.++.+  ||..||..|+++..+|+.+|+.. + +.+.+||.++||
T Consensus         2 i~y~V~~GD--TL~~IA~~y~v~~~~i~~~N~~~-~-~~l~~Gq~L~IP   46 (48)
T d1y7ma2           2 LTYQVKQGD--TLNSIAADFRISTAALLQANPSL-Q-AGLTAGQSIVIP   46 (48)
T ss_dssp             EEEECCTTC--CHHHHHHHTTSCCCCCCCTSCTT-C-SSCCTTCEEEET
T ss_pred             EEEEECCCC--CHHHHHHHhCCCHHHHHHHcCCC-C-CCCCCCCEEEeC
Confidence            578888665  99999999999999999999975 3 469999999998

>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Membrane-bound lytic murein transclycosylase D, MltD
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=6.6e-05  Score=52.06  Aligned_cols=45  Identities=22%  Similarity=0.309  Sum_probs=39.4

Q ss_pred             eeecccCCCCCCHHHHHHhhCCChHHHHhhcCCCCCCCCCCCCccEEeee
Q 047629           45 VAYFAQSPEFLDLSNISDLFGVSRLSIARASNLVSEDTPLVPKQLLLVPI   94 (615)
Q Consensus        45 ~~y~~~~~~~~~l~~i~~lf~~~~~~i~~~n~~~~~~~~~~~~~~~~vP~   94 (615)
                      ++|+.++.+  ||..||..|+++..+|+.+|+..   +.+.+||.|.||+
T Consensus         3 v~y~V~~GD--Tl~~IA~~y~vs~~~i~~~N~l~---~~l~~Gq~L~i~v   47 (48)
T d1e0ga_           3 ITYRVRKGD--SLSSIAKRHGVNIKDVMRWNSDT---ANLQPGDKLTLFV   47 (48)
T ss_dssp             CEEEECTTC--CHHHHHHHHTCCHHHHHHHCSCG---GGCCTTEEEECCC
T ss_pred             EEEEECCCC--CHHHHHHHHCCCHHHHHHHcCCc---ccCcCCCEEEEEe
Confidence            468887665  99999999999999999999874   3599999999997

>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Hypothetical protein YkuD, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.37  E-value=5.2e-05  Score=52.71  Aligned_cols=45  Identities=24%  Similarity=0.391  Sum_probs=37.8

Q ss_pred             EEEecCCCCchhHHHHHhcCChhhHhhhccccCccccCccceecc
Q 047629          174 ITYVWQPGDDVSQVGAKLNASSAAIETENEYRNFSEAVSLPVLIP  218 (615)
Q Consensus       174 ~ty~~~~gd~~~~ia~~F~~s~~~i~~~n~~~~~~~~~~~~~l~p  218 (615)
                      ++|.|+.|||+..||.+|+++...+..+|+..+....+|..+.+|
T Consensus         2 i~y~V~~GDTL~~IA~~y~v~~~~i~~~N~~~~~~l~~Gq~L~IP   46 (48)
T d1y7ma2           2 LTYQVKQGDTLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIP   46 (48)
T ss_dssp             EEEECCTTCCHHHHHHHTTSCCCCCCCTSCTTCSSCCTTCEEEET
T ss_pred             EEEEECCCCCHHHHHHHhCCCHHHHHHHcCCCCCCCCCCCEEEeC
Confidence            689999999999999999999999999998854445566666665

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.18  E-value=0.00045  Score=65.37  Aligned_cols=133  Identities=17%  Similarity=0.175  Sum_probs=77.6

Q ss_pred             ceEEEEEEC-CeEEEEEEcc----HHHHHHHHHHHhcCCCC--cccEEEEEEcCCCcEEEEEeecCCCCHHHh-------
Q 047629          343 KSVYRATID-GKVLAVKKIK----EDVTEELRILQRINHAN--LVKLMGVSSDSQGNRFLVYEYAENGSLDKW-------  408 (615)
Q Consensus       343 ~~Vy~~~~~-g~~vAvK~~~----~~~~~Ei~~l~~l~H~n--iv~l~g~~~~~~~~~~lV~E~~~~GsL~~~-------  408 (615)
                      ..||+...+ |..+.+|.-.    .++..|...++.+....  +-++++++.+ ++..++|||++++-++.+.       
T Consensus        25 ~~v~r~~~~~~~~~vlK~~~~~~~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~-~~~~~~v~~~i~G~~~~~~~~~~~~~  103 (255)
T d1nd4a_          25 AAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTE-AGRDWLLLGEVPGQDLLSSHLAPAEK  103 (255)
T ss_dssp             CEEEEEECTTSCCEEEEEECSCTTSCHHHHHHHHHHHHTTTCCBCCEEEEEEC-SSCEEEEEECCSSEETTTSCCCHHHH
T ss_pred             CeEEEEEeCCCCEEEEEeCCccCHhHHHHHHHHHHHHHhcCCCCCceeeeccc-ccceEEEEEeeeccccccccccHHHH
Confidence            468988774 5567888765    34778999998875433  4567777664 4578999999987554321       


Q ss_pred             ----------hccCCCCCCCCCcccccCHHHHHHHH--------------------HHHHHHHHHHHhCC----CCCeEe
Q 047629          409 ----------LHPKSKSSSSSGSVIFLTWSQRLRVA--------------------LDVANGLQYMHEHA----QPSIVH  454 (615)
Q Consensus       409 ----------L~~~~~~~~~~~~~~~l~~~~~~~i~--------------------~~ia~gL~yLH~~~----~~~ivH  454 (615)
                                ||.........    .-.+.....-.                    ......+..+....    .+.++|
T Consensus       104 ~~~l~~~la~LH~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~liH  179 (255)
T d1nd4a_         104 VSIMADAMRRLHTLDPATCPF----DHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTH  179 (255)
T ss_dssp             HHHHHHHHHHHTTSCGGGCCC----BCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTCCSSCCEEEEC
T ss_pred             HHHHHHHHHHHccCChhhCCC----cccchhhHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHHhCCccCCceEEe
Confidence                      11111000000    00111110000                    01112233343321    234899


Q ss_pred             cCCCCCceeeCCCCcEEEeecCCCCC
Q 047629          455 RDIRTNNIQLDSRFKAKIANFSLAAP  480 (615)
Q Consensus       455 rDlk~~NILld~~~~~kl~DFGla~~  480 (615)
                      +|+.+.|||++++..+-|.||+.+..
T Consensus       180 gD~~~~Nvl~~~~~~~~iID~~~~~~  205 (255)
T d1nd4a_         180 GDACLPNIMVENGRFSGFIDCGRLGV  205 (255)
T ss_dssp             SSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             CCCCCcceEEeCCceEEEEEchhccc
Confidence            99999999999876678999997654

>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LysM domain
superfamily: LysM domain
family: LysM domain
domain: Membrane-bound lytic murein transclycosylase D, MltD
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00045  Score=47.65  Aligned_cols=45  Identities=18%  Similarity=0.162  Sum_probs=36.5

Q ss_pred             EEEecCCCCchhHHHHHhcCChhhHhhhccccCccccCccceeccc
Q 047629          174 ITYVWQPGDDVSQVGAKLNASSAAIETENEYRNFSEAVSLPVLIPV  219 (615)
Q Consensus       174 ~ty~~~~gd~~~~ia~~F~~s~~~i~~~n~~~~~~~~~~~~~l~p~  219 (615)
                      ++|.|+.||++..||.+|+++...+...|+..+ ...+|..+.+|+
T Consensus         3 v~y~V~~GDTl~~IA~~y~vs~~~i~~~N~l~~-~l~~Gq~L~i~v   47 (48)
T d1e0ga_           3 ITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTA-NLQPGDKLTLFV   47 (48)
T ss_dssp             CEEEECTTCCHHHHHHHHTCCHHHHHHHCSCGG-GCCTTEEEECCC
T ss_pred             EEEEECCCCCHHHHHHHHCCCHHHHHHHcCCcc-cCcCCCEEEEEe
Confidence            479999999999999999999999999998743 344566555554

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=95.81  E-value=0.018  Score=58.05  Aligned_cols=31  Identities=19%  Similarity=0.332  Sum_probs=26.2

Q ss_pred             CCeEecCCCCCceeeCCCCcEEEeecCCCCCC
Q 047629          450 PSIVHRDIRTNNIQLDSRFKAKIANFSLAAPA  481 (615)
Q Consensus       450 ~~ivHrDlk~~NILld~~~~~kl~DFGla~~~  481 (615)
                      +.++|+|+.+.|||++++ .++|.||..+...
T Consensus       223 ~~LiHGDl~~gNIlv~~~-~~~vID~E~a~~G  253 (392)
T d2pula1         223 ETLIHGDLHTGSIFASEH-ETKVIDPEFAFYG  253 (392)
T ss_dssp             CEEECSCCCGGGEEECSS-CEEECCCTTCEEE
T ss_pred             cceeccCCcCCceeEcCC-ceEEechhhcccC
Confidence            459999999999999876 4899999887654

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=92.73  E-value=0.067  Score=52.05  Aligned_cols=59  Identities=19%  Similarity=0.271  Sum_probs=38.5

Q ss_pred             eEEEEEE-CCeEEEEEEcc------HHHHHHHHHHHhcCCCCc--ccEEEE----EEcCCCcEEEEEeecCC
Q 047629          344 SVYRATI-DGKVLAVKKIK------EDVTEELRILQRINHANL--VKLMGV----SSDSQGNRFLVYEYAEN  402 (615)
Q Consensus       344 ~Vy~~~~-~g~~vAvK~~~------~~~~~Ei~~l~~l~H~ni--v~l~g~----~~~~~~~~~lV~E~~~~  402 (615)
                      .||+... +|+.+++|..+      +++..|...+..|...++  +..+..    ....++..+.+++++++
T Consensus        37 ~vy~v~~~dg~~~VlK~~rp~~~s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G  108 (325)
T d1zyla1          37 RVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGG  108 (325)
T ss_dssp             EEEEECCTTCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCC
T ss_pred             eeEEEEcCCCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecCC
Confidence            7999987 78889999864      457789998888743222  111110    01123457889999875

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.07  E-value=0.2  Score=49.88  Aligned_cols=57  Identities=18%  Similarity=0.213  Sum_probs=37.3

Q ss_pred             eEEEEEEC---------CeEEEEEEcc-----HHHHHHHHHHHhcCCCCcc-cEEEEEEcCCCcEEEEEeecCCCCH
Q 047629          344 SVYRATID---------GKVLAVKKIK-----EDVTEELRILQRINHANLV-KLMGVSSDSQGNRFLVYEYAENGSL  405 (615)
Q Consensus       344 ~Vy~~~~~---------g~~vAvK~~~-----~~~~~Ei~~l~~l~H~niv-~l~g~~~~~~~~~~lV~E~~~~GsL  405 (615)
                      .+|+....         .+.|.++..-     .+..+|..+++.+.-.++. ++++++.  +   .+|+||+++-.|
T Consensus        57 ~~y~v~~~~~~~~~~~~~~~vllRi~g~~~~~idr~~E~~i~~~ls~~gl~Pkll~~~~--~---g~I~efi~g~~l  128 (395)
T d1nw1a_          57 MLFLCRLSEVYPPIRNEPNKVLLRVYFNPETESHLVAESVIFTLLSERHLGPKLYGIFS--G---GRLEEYIPSRPL  128 (395)
T ss_dssp             EEEEEEECTTSCCSSSCCSEEEEEEECSCCCHHHHHHHHHHHHHHHHTTSSSCEEEEET--T---EEEECCCCEEEC
T ss_pred             ceEEEEeCCCCccccCCCCcEEEEecCCcchhhHHHHHHHHHHHHHhCCCCCeEEEEcC--C---ceEEEEeccccC
Confidence            68887762         2446665532     3456899999988544555 7777652  2   589999986443