Citrus Sinensis ID: 047673
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 437 | 2.2.26 [Sep-21-2011] | |||||||
| Q07423 | 510 | Hexose carrier protein HE | N/A | no | 0.983 | 0.843 | 0.588 | 1e-160 | |
| Q8L7R8 | 514 | Sugar transport protein 3 | yes | no | 0.956 | 0.813 | 0.495 | 1e-122 | |
| Q41144 | 523 | Sugar carrier protein C O | N/A | no | 0.977 | 0.816 | 0.456 | 1e-114 | |
| Q94AZ2 | 526 | Sugar transport protein 1 | no | no | 0.967 | 0.804 | 0.446 | 1e-114 | |
| P23586 | 522 | Sugar transport protein 1 | no | no | 0.967 | 0.810 | 0.452 | 1e-113 | |
| O04249 | 513 | Sugar transport protein 7 | no | no | 0.963 | 0.820 | 0.430 | 1e-113 | |
| Q39228 | 514 | Sugar transport protein 4 | no | no | 0.956 | 0.813 | 0.463 | 1e-112 | |
| Q9SX48 | 517 | Sugar transport protein 9 | no | no | 0.965 | 0.816 | 0.440 | 1e-111 | |
| Q9LT15 | 514 | Sugar transport protein 1 | no | no | 0.965 | 0.821 | 0.426 | 1e-110 | |
| Q9FMX3 | 514 | Sugar transport protein 1 | no | no | 0.967 | 0.822 | 0.433 | 1e-109 |
| >sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 565 bits (1457), Expect = e-160, Method: Compositional matrix adjust.
Identities = 288/489 (58%), Positives = 357/489 (73%), Gaps = 59/489 (12%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFD 60
MT FV LSC++AA GG+IFGYDIG+SGGVTSM+PFLKKFF +VYRKMKEDT+ISNYCKFD
Sbjct: 18 MTSFVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFFPDVYRKMKEDTEISNYCKFD 77
Query: 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLIL 120
SQLL +FTSSLY+AGL+AS FAS+VTRAFGRK SIL+GG FL +A+GGAA+++YMLI
Sbjct: 78 SQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGXVFLAXAALGGAAVNVYMLIF 137
Query: 121 G---LNAPISLRN----------GTPKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGG 167
G L + N P++ G N GFQ V G LSANL+NYGT+KI+GG
Sbjct: 138 GRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSVGIGALSANLINYGTEKIEGG 197
Query: 168 WGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD 227
WGWRISLAMA PA+ILT G LFLPETP+S+IQR+ND+++A+ ++Q VRGT DVQAELDD
Sbjct: 198 WGWRISLAMAAVPAAILTFGALFLPETPNSLIQRSNDHERAKLMLQRVRGTTDVQAELDD 257
Query: 228 LIRQSSVSKNINHPFKKIIDRKYRPQL------------------------------LSE 257
LI+ S +S+ I HPFK I+ RKYRPQL L E
Sbjct: 258 LIKASIISRTIQHPFKNIMRRKYRPQLVMAVAIPFFQQVTGINVIAFYAPILFRTIGLEE 317
Query: 258 STSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ---- 313
S SLL S++VTG +G+ ST + M++ DKLGR+ LF+ GG+Q+ V+Q+M+GS+MA +
Sbjct: 318 SASLL-SSIVTGLVGSASTFISMLIVDKLGRRALFIFGGVQMFVAQIMVGSIMAAELGDH 376
Query: 314 -----------LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSL 362
L+LIC+Y AGF + W PLGWLVPSEIFPLEIRSAG+SI VAV LFT +
Sbjct: 377 GGIGKGYAYIVLILICIYVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSIVVAVSFLFTFV 436
Query: 363 VAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVWRVHWFWRKIV 422
VAQT L+ML HFK+G+FFFFGGW++ MT FVHF LPETK VPIE+MD VWR HWFW+KI+
Sbjct: 437 VAQTFLSMLCHFKSGIFFFFGGWVVVMTAFVHFLLPETKKVPIEKMDIVWRDHWFWKKII 496
Query: 423 DDTLPEKSN 431
+ E++N
Sbjct: 497 GEEAAEENN 505
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Active uptake of hexoses. Probable glucose/hydrogen symport. Ricinus communis (taxid: 3988) |
| >sp|Q8L7R8|STP3_ARATH Sugar transport protein 3 OS=Arabidopsis thaliana GN=STP3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 438 bits (1126), Expect = e-122, Method: Compositional matrix adjust.
Identities = 240/484 (49%), Positives = 313/484 (64%), Gaps = 66/484 (13%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKI-----SN 55
+T FVV SC++AA GG+IFGYDIG+SGGV SM PFLK+FF +VY+ +ED + ++
Sbjct: 20 ITYFVVASCVMAAMGGVIFGYDIGVSGGVMSMGPFLKRFFPKVYKLQEEDRRRRGNSNNH 79
Query: 56 YCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDI 115
YC F+SQLL +FTSSLY++GLIA+L AS+VTR++GRK SI +GG +FL +A+GG+A ++
Sbjct: 80 YCLFNSQLLTSFTSSLYVSGLIATLLASSVTRSWGRKPSIFLGGVSFLAGAALGGSAQNV 139
Query: 116 YMLILGL------------NAPISLRNGTP-KHIGGFNIGFQVCVATGILSANLLNYGTQ 162
MLI+ + P+ L P K+ G + GFQ+C+ G LSAN++NY TQ
Sbjct: 140 AMLIIARLLLGVGVGFANQSVPLYLSEMAPAKYRGAISNGFQLCIGIGFLSANVINYETQ 199
Query: 163 KIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQ 222
IK GW RISLA A PASILT+G LFLPETP+SIIQ D K E +++ VRGT DVQ
Sbjct: 200 NIKHGW--RISLATAAIPASILTLGSLFLPETPNSIIQTTGDVHKTELMLRRVRGTNDVQ 257
Query: 223 AELDDLIRQSSVSKNINHPFKKIIDRKYRPQLL--------------------------- 255
EL DL+ SS S ++ F K++ RKYRP+L+
Sbjct: 258 DELTDLVEASSGSDTDSNAFLKLLQRKYRPELVMALVIPFFQQVTGINVVAFYAPVLYRT 317
Query: 256 ---SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMAT 312
ES S LMS LVTG +GT ST+L M++ D++GRK LFL+GG+Q+LVSQV IG ++
Sbjct: 318 VGFGESGS-LMSTLVTGIVGTSSTLLSMLVVDRIGRKTLFLIGGLQMLVSQVTIGVIVMV 376
Query: 313 QLVLICVYNA---------------GFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGL 357
V V GF + W PLGWLVPSEIFPLEIRS +S+TVAV
Sbjct: 377 ADVHDGVIKEGYGYAVVVLVCVYVAGFGWSWGPLGWLVPSEIFPLEIRSVAQSVTVAVSF 436
Query: 358 LFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVWRVHWF 417
+FT VAQ+ ML F+AG+FFF+GGWL+ MT V FLPETKNVPIE++ +W HWF
Sbjct: 437 VFTFAVAQSAPPMLCKFRAGIFFFYGGWLVVMTVAVQLFLPETKNVPIEKVVGLWEKHWF 496
Query: 418 WRKI 421
WR++
Sbjct: 497 WRRM 500
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/489 (45%), Positives = 305/489 (62%), Gaps = 62/489 (12%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFD 60
+T++V ++C+VAA GGLIFGYDIGISGGVTSM+ FLKKFF VYRK K D + YC++D
Sbjct: 21 LTLYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFFPSVYRKKKADESSNQYCQYD 80
Query: 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLIL 120
SQ L FTSSLY+A LIASL AST+TR FGRK S+L GG F + I GAA ++MLIL
Sbjct: 81 SQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGVLFCAGAIINGAAKAVWMLIL 140
Query: 121 GL------------NAPISLRNGTP-KHIGGFNIGFQVCVATGILSANLLNYGTQKIKGG 167
G + P+ L P K+ G NIGFQ+ + GIL AN+LNY KIKGG
Sbjct: 141 GRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILVANVLNYFFAKIKGG 200
Query: 168 WGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD 227
WGWR+SL A+ PA I+T+G L LP+TP+S+I+R +++A ++ VRG DV E D
Sbjct: 201 WGWRLSLGGAMVPALIITVGSLVLPDTPNSMIERGQ-HEEARAHLKRVRGVEDVDEEFTD 259
Query: 228 LIRQSSVSKNINHPFKKIIDRKYRPQLLSE-----------------------------S 258
L+ S SK + HP++ ++ RKYRP L S
Sbjct: 260 LVHASEDSKKVEHPWRNLLQRKYRPHLSMAIAIPFFQQLTGINVIMFYAPVLFDTIGFGS 319
Query: 259 TSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ----- 313
+ LMSA++TG + +T++ + DK GR+ LFL GG+Q+L+ Q ++ + + +
Sbjct: 320 DAALMSAVITGLVNVFATMVSIYGVDKWGRRFLFLEGGVQMLICQAIVAACIGAKFGVDG 379
Query: 314 -------------LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFT 360
++ IC+Y +GF + W PLGWLVPSEIFPLEIRSA +S+ V+V + FT
Sbjct: 380 APGDLPQWYAVVVVLFICIYVSGFAWSWGPLGWLVPSEIFPLEIRSAAQSVNVSVNMFFT 439
Query: 361 SLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVWRVHWFW-R 419
+VAQ L ML H K G+F FF +++ M+ FV++FLPETK +PIE+M +VW+ HW+W R
Sbjct: 440 FVVAQVFLIMLCHLKFGLFIFFSFFVLIMSIFVYYFLPETKGIPIEEMGQVWKQHWYWSR 499
Query: 420 KIVDDTLPE 428
+VD+ P
Sbjct: 500 YVVDEDYPN 508
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Ricinus communis (taxid: 3988) |
| >sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 411 bits (1057), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/484 (44%), Positives = 301/484 (62%), Gaps = 61/484 (12%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDT-KISNYCKF 59
+T V++SCI+AA+GGL+FGYD+G+SGGVTSM FL+KFF VYRK+ K SNYCK+
Sbjct: 19 ITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPVVYRKVVAGADKDSNYCKY 78
Query: 60 DSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLI 119
D+Q L FTSSLY+AGL A+ FAS TR GR+ ++L+ G F+ A+ A D+ MLI
Sbjct: 79 DNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFFIIGVALNAGAQDLAMLI 138
Query: 120 LGL------------NAPISLRNGTPKHI-GGFNIGFQVCVATGILSANLLNYGTQKIKG 166
G P+ L P I GG NI FQ+ V GIL ANL+NYGT KIKG
Sbjct: 139 AGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTAKIKG 198
Query: 167 GWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELD 226
GWGWR+SL +A PA +LT+G L + ETP+S+++R + + +++ +RGT +V+ E
Sbjct: 199 GWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGR-LDEGKAVLRRIRGTDNVEPEFA 257
Query: 227 DLIRQSSVSKNINHPFKKIIDRKYRPQLLSE----------------------------- 257
DL+ S ++K + HPF+ ++ R+ RPQL+
Sbjct: 258 DLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTGINAIMFYAPVLFSTLGFG 317
Query: 258 STSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQL--- 314
S + L SA+VTG + +ST++ + DK+GR+VL L G+Q+ SQV+I ++ ++
Sbjct: 318 SDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAGVQMFFSQVVIAIILGVKVTDT 377
Query: 315 -------------VLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTS 361
V+IC Y A F + W PLGWL+PSE FPLE RSAG+S+TV V LLFT
Sbjct: 378 STNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTF 437
Query: 362 LVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQM-DKVWRVHWFWRK 420
++AQ L+ML HFK G+F FF W++ M+ FV F LPETKN+PIE+M ++VW+ HWFW +
Sbjct: 438 IIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVMFLLPETKNIPIEEMTERVWKKHWFWAR 497
Query: 421 IVDD 424
+DD
Sbjct: 498 FMDD 501
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Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 219/484 (45%), Positives = 299/484 (61%), Gaps = 61/484 (12%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFD 60
+T FV+ +C+VAA GGLIFGYDIGISGGVTSM FLK+FF VYRK +ED + YC++D
Sbjct: 19 LTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQEDASTNQYCQYD 78
Query: 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLIL 120
S L FTSSLY+A LI+SL ASTVTR FGR+ S+L GG F + I G A ++MLI+
Sbjct: 79 SPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFCAGALINGFAKHVWMLIV 138
Query: 121 GL------------NAPISLRNGTP-KHIGGFNIGFQVCVATGILSANLLNYGTQKIKGG 167
G P+ L P K+ G NIGFQ+ + GIL A +LNY KIKGG
Sbjct: 139 GRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGILVAEVLNYFFAKIKGG 198
Query: 168 WGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD 227
WGWR+SL AV PA I+TIG L LP+TP+S+I+R +++A+ ++ +RG DV E DD
Sbjct: 199 WGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQ-HEEAKTKLRRIRGVDDVSQEFDD 257
Query: 228 LIRQSSVSKNINHPFKKIIDRKYRPQLLSE-----------------------------S 258
L+ S S++I HP++ ++ RKYRP L +
Sbjct: 258 LVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLTGINVIMFYAPVLFNTIGFTT 317
Query: 259 TSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ----- 313
+ LMSA+VTG + +T++ + D+ GR+ LFL GG Q+L+ Q ++ + + +
Sbjct: 318 DASLMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQMLICQAVVAACIGAKFGVDG 377
Query: 314 -------------LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFT 360
+ IC+Y AGF + W PLGWLVPSEIFPLEIRSA +SITV+V ++FT
Sbjct: 378 TPGELPKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVNMIFT 437
Query: 361 SLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVWRVHWFWRK 420
++AQ L ML H K G+F F +++ M+ FV+ FLPETK +PIE+M +VWR HW+W +
Sbjct: 438 FIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFVYIFLPETKGIPIEEMGQVWRSHWYWSR 497
Query: 421 IVDD 424
V+D
Sbjct: 498 FVED 501
|
Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04249|STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/481 (43%), Positives = 306/481 (63%), Gaps = 60/481 (12%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFD 60
+T +V+++C+VAA GG IFGYDIGISGGVTSM+ FL++FF VY K K+ + SNYCK+D
Sbjct: 23 VTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEEFFHTVYEKKKQAHE-SNYCKYD 81
Query: 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLIL 120
+Q LAAFTSSLY+AGL+++L AS +TR +GR+ASI+ GG +FL S + A+++ ML+
Sbjct: 82 NQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGSGLNAGAVNLAMLLA 141
Query: 121 GL------------NAPISLRNGTPKHI-GGFNIGFQVCVATGILSANLLNYGTQKIKGG 167
G P+ L P H+ GG N+ FQ+ GI +AN++NYGTQ++K
Sbjct: 142 GRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQLATTIGIFTANMVNYGTQQLKP- 200
Query: 168 WGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD 227
WGWR+SL +A PA ++T+G FLPETP+S+++R ++ +++ +RGT +V AEL D
Sbjct: 201 WGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLT-ERGRRVLVKLRGTENVNAELQD 259
Query: 228 LIRQSSVSKNINHPFKKIIDRKYRPQLLSE-----------------------------S 258
++ S ++ +I HPF+ I+ +++RPQL+
Sbjct: 260 MVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQILTGINSILFYAPVLFQTMGFGG 319
Query: 259 TSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ----- 313
+ L S+ +TG + +ST + + L D+LGR+ L + GGIQ+++ QV++ ++ +
Sbjct: 320 NASLYSSALTGAVLVLSTFISIGLVDRLGRRALLITGGIQMIICQVIVAVILGVKFGDNQ 379
Query: 314 ----------LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLV 363
++ IC++ F + W PLGW +PSEIFPLE RSAG+SITVAV LLFT ++
Sbjct: 380 ELSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFPLETRSAGQSITVAVNLLFTFII 439
Query: 364 AQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVWRVHWFWRKIVD 423
AQ L +L FK G+F FF GW+ MT FV+F LPETK VPIE+M +W HWFW+K++
Sbjct: 440 AQAFLGLLCAFKFGIFLFFAGWVTVMTIFVYFLLPETKGVPIEEMTLLWSKHWFWKKVLP 499
Query: 424 D 424
D
Sbjct: 500 D 500
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q39228|STP4_ARATH Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 222/479 (46%), Positives = 304/479 (63%), Gaps = 61/479 (12%)
Query: 5 VVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLL 64
V ++C + A GGLIFGYD+GISGGVTSMEPFL++FF VY+KMK + + YC+FDSQLL
Sbjct: 23 VFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEFFPYVYKKMKSAHE-NEYCRFDSQLL 81
Query: 65 AAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL-- 122
FTSSLY+A L++SLFAST+TR FGRK S+ +GG TF SA G A +I ML++G
Sbjct: 82 TLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTFFIGSAFNGFAQNIAMLLIGRIL 141
Query: 123 ----------NAPISLRNGTPKHI-GGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWR 171
+ P+ L P ++ G FN GFQV + GI+ A ++NY T ++KG GWR
Sbjct: 142 LGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQVAIIFGIVVATIINYFTAQMKGNIGWR 201
Query: 172 ISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDDLIRQ 231
ISL +A PA ++ IG L LP+TP+S+I+R ++A++++Q +RGT +V E DLI
Sbjct: 202 ISLGLACVPAVMIMIGALILPDTPNSLIERGYT-EEAKEMLQSIRGTNEVDEEFQDLIDA 260
Query: 232 SSVSKNINHPFKKIIDRKYRPQLLSE-----------------------------STSLL 262
S SK + HP+K I+ +YRPQL+ S + L
Sbjct: 261 SEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQLTGINVITFYAPVLFQTLGFGSKASL 320
Query: 263 MSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ--------- 313
+SA+VTG I + T + + D+ GR++LFL GGIQ+LVSQ+ IG+++ +
Sbjct: 321 LSAMVTGIIELLCTFVSVFTVDRFGRRILFLQGGIQMLVSQIAIGAMIGVKFGVAGTGNI 380
Query: 314 --------LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQ 365
+ LIC+Y AGF + W PLGWLVPSEI PLEIRSA ++I V+V + FT LVAQ
Sbjct: 381 GKSDANLIVALICIYVAGFAWSWGPLGWLVPSEISPLEIRSAAQAINVSVNMFFTFLVAQ 440
Query: 366 TVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVWRVHWFWRKIVDD 424
L ML H K G+FFFF +++ MT F++ LPETKNVPIE+M++VW+ HWFW K + D
Sbjct: 441 LFLTMLCHMKFGLFFFFAFFVVIMTIFIYLMLPETKNVPIEEMNRVWKAHWFWGKFIPD 499
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, methylglucose, galactose, xylose and mannose, but not fructose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 213/484 (44%), Positives = 298/484 (61%), Gaps = 62/484 (12%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFD 60
+TVFV+++CIVAA GGL+FGYD+GISGGVTSME FL KFF EV ++M E + + YCKFD
Sbjct: 21 VTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEARRETAYCKFD 80
Query: 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLIL 120
+QLL FTSSLY+A L +S AS VTR +GRK S+ VGG FL S A ++ MLI+
Sbjct: 81 NQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGSLFNAFATNVAMLIV 140
Query: 121 GL------------NAPISLRNGTPKHI-GGFNIGFQVCVATGILSANLLNYGTQKIKGG 167
G + P+ L P I G NIGFQ+ + GIL ANL+NYGT ++
Sbjct: 141 GRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILIANLINYGTSQMAKN 200
Query: 168 WGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD 227
GWR+SL +A PA I+ IG LP+TP+S+++R Y++A +++Q +RG +V E D
Sbjct: 201 -GWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGK-YEQAREMLQKIRGADNVDEEFQD 258
Query: 228 LIRQSSVSKNINHPFKKIIDR-KYRPQLLSEST--------------------------- 259
L +K +++P+K I + KYRP L+ S
Sbjct: 259 LCDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQITGINVIMFYAPVLFKTLGFA 318
Query: 260 --SLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ---- 313
+ L+SA++TG + VST++ + D+ GR++LFL GGIQ++VSQ+++G+++ +
Sbjct: 319 DDASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGIQMIVSQIVVGTLIGMKFGTT 378
Query: 314 -------------LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFT 360
L IC+Y AGF + W PLGWLVPSEI PLEIR AG++I V+V + FT
Sbjct: 379 GSGTLTPATADWILAFICLYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNMFFT 438
Query: 361 SLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVWRVHWFWRK 420
L+ Q L ML H K G+F+FFGG + MT F++F LPETK VPIE+M +VW+ H FW++
Sbjct: 439 FLIGQFFLTMLCHMKFGLFYFFGGMVAVMTVFIYFLLPETKGVPIEEMGRVWKQHPFWKR 498
Query: 421 IVDD 424
+ D
Sbjct: 499 YMPD 502
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/483 (42%), Positives = 294/483 (60%), Gaps = 61/483 (12%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFD 60
+T FV+++CIVAA GGL+FGYD+GISGGVTSME FL KFF +V +MK+ + YCKFD
Sbjct: 21 VTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQMKKAKHDTAYCKFD 80
Query: 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLIL 120
+Q+L FTSSLY+A L+AS AS +TR GRK S+ +GG FL + A+++ MLI+
Sbjct: 81 NQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAFAVNVSMLII 140
Query: 121 GL------------NAPISLRNGTPKHI-GGFNIGFQVCVATGILSANLLNYGTQKIKGG 167
G + P+ L P I G NIGFQ+ + GIL ANL+NYGT K+
Sbjct: 141 GRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILVANLINYGTSKM-AQ 199
Query: 168 WGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD 227
GWR+SL +A PA ++ IG LP+TP+S+++R + ++A+++++ +RG +V E D
Sbjct: 200 HGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKN-EEAKQMLKKIRGADNVDHEFQD 258
Query: 228 LIRQSSVSKNINHPFKKIIDRKYRPQLLSEST---------------------------- 259
LI +K + +P+K I++ KYRP L+ S
Sbjct: 259 LIDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQITGINVIMFYAPVLFKTLGFGD 318
Query: 260 -SLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ----- 313
+ LMSA++TG + +ST + + D+ GR++LFL GGIQ+ + Q+++GS + +
Sbjct: 319 DAALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGGIQMFICQLLVGSFIGARFGTSG 378
Query: 314 ------------LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTS 361
L ICVY AGF + W PLGWLVPSEI PLEIR AG++I V+V + FT
Sbjct: 379 TGTLTPATADWILAFICVYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTF 438
Query: 362 LVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVWRVHWFWRKI 421
L+ Q L ML H K G+F+FF + MT F++F LPETK VPIE+M +VW+ HWFW+K
Sbjct: 439 LIGQFFLTMLCHMKFGLFYFFASMVAIMTVFIYFLLPETKGVPIEEMGRVWKQHWFWKKY 498
Query: 422 VDD 424
+ +
Sbjct: 499 IPE 501
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 394 bits (1012), Expect = e-109, Method: Compositional matrix adjust.
Identities = 210/484 (43%), Positives = 304/484 (62%), Gaps = 61/484 (12%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDT-KISNYCKF 59
+T FV+++CIVAA GGL+FGYDIGISGGV SME FL KFF +V R+M+ + + YCK+
Sbjct: 20 VTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFPDVLRQMQNKRGRETEYCKY 79
Query: 60 DSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLI 119
D++LL FTSSLY+A L AS AST+TR FGRK S+++G FL+ + + G A+++ MLI
Sbjct: 80 DNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLAFLSGALLNGLAINLEMLI 139
Query: 120 LGL------------NAPISLRNGTPKHI-GGFNIGFQVCVATGILSANLLNYGTQKIKG 166
+G + P+ L P I G NIGFQ+ + GIL+AN++NY T K++
Sbjct: 140 IGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAITIGILAANIVNYVTPKLQN 199
Query: 167 GWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELD 226
G GWR+SL +A PA ++ +G FLP+TP+SI++R N +KA++++Q +RGT +V+ E +
Sbjct: 200 GIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNK-EKAKEMLQKIRGTMEVEHEFN 258
Query: 227 DLIRQSSVSKNINHPFKKIIDRKYRPQL--------LSESTSL----------------- 261
+L +K + HP+ I+ +YRPQL + T +
Sbjct: 259 ELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQLTGINVIMFYAPVLFKTIGFG 318
Query: 262 ----LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ---- 313
L+SA++TG + +STI+ + DK GR+ LFL GG Q++V+Q+ +GS++ +
Sbjct: 319 NDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGGFQMIVTQIAVGSMIGWKFGFN 378
Query: 314 -------------LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFT 360
L LIC+Y AGF + W PLGWLVPSEI PLEIRSAG+S+ V+V + FT
Sbjct: 379 GEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSEICPLEIRSAGQSLNVSVNMFFT 438
Query: 361 SLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVWRVHWFWRK 420
+ Q L ML H K G+F+FF G ++ MT F++F LPETK VPIE+M KVW+ H +W K
Sbjct: 439 FFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIFIYFLLPETKGVPIEEMGKVWKEHRYWGK 498
Query: 421 IVDD 424
++
Sbjct: 499 YSNN 502
|
Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 437 | ||||||
| 357455795 | 509 | Hexose carrier [Medicago truncatula] gi| | 0.983 | 0.844 | 0.595 | 1e-159 | |
| 225466031 | 508 | PREDICTED: hexose carrier protein HEX6 [ | 0.981 | 0.844 | 0.586 | 1e-159 | |
| 47078687 | 508 | putative hexose transporter [Vitis vinif | 0.981 | 0.844 | 0.586 | 1e-159 | |
| 255539853 | 510 | sugar transporter, putative [Ricinus com | 0.983 | 0.843 | 0.588 | 1e-158 | |
| 1708191 | 510 | RecName: Full=Hexose carrier protein HEX | 0.983 | 0.843 | 0.588 | 1e-158 | |
| 147816021 | 508 | hypothetical protein VITISV_025873 [Viti | 0.981 | 0.844 | 0.584 | 1e-158 | |
| 224129904 | 516 | predicted protein [Populus trichocarpa] | 0.970 | 0.821 | 0.576 | 1e-158 | |
| 356517750 | 501 | PREDICTED: hexose carrier protein HEX6-l | 0.965 | 0.842 | 0.602 | 1e-152 | |
| 224139190 | 509 | predicted protein [Populus trichocarpa] | 0.967 | 0.831 | 0.593 | 1e-152 | |
| 356515367 | 510 | PREDICTED: hexose carrier protein HEX6-l | 0.967 | 0.829 | 0.559 | 1e-147 |
| >gi|357455795|ref|XP_003598178.1| Hexose carrier [Medicago truncatula] gi|355487226|gb|AES68429.1| Hexose carrier [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 291/489 (59%), Positives = 350/489 (71%), Gaps = 59/489 (12%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFD 60
MT V+LSC+VAA+GG+IFGYDIGISGGVTSM PFL+KFF +VY KMK+D KISNYCKFD
Sbjct: 19 MTPIVILSCMVAATGGIIFGYDIGISGGVTSMVPFLEKFFPDVYTKMKQDNKISNYCKFD 78
Query: 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLIL 120
SQLL FTSSLYIAGL+AS FAS++TRAFGRK SILVGG FL +A+GGAAL+IYMLIL
Sbjct: 79 SQLLTTFTSSLYIAGLLASFFASSITRAFGRKPSILVGGAAFLIGAALGGAALNIYMLIL 138
Query: 121 G---LNAPISLRN----------GTPKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGG 167
G L I N P++ G NIGFQ+CV G+LSANL+N+GT+KIK G
Sbjct: 139 GRVLLGVGIGFANQAVPLYLSEMALPRYRGAINIGFQLCVGIGVLSANLINFGTEKIKDG 198
Query: 168 WGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD 227
WGWRISLAMA PA+ILT+G FLPETP+SIIQ + ++QKA+ ++Q +RGT DVQ E +D
Sbjct: 199 WGWRISLAMAAVPATILTLGAFFLPETPNSIIQNSKNHQKAKLMLQSIRGTHDVQQEFED 258
Query: 228 LIRQSSVSKNINHPFKKIIDRKYRPQL------------------------------LSE 257
LI S +S +I HPFK I+ RKYRPQL L E
Sbjct: 259 LIEASIMSNSIKHPFKNILQRKYRPQLVMAIAIPFFQQFTGINVISFYAPILFLTIGLGE 318
Query: 258 STSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ---- 313
S SLL SA++ G +GT ST + M++ DKLGR+VLF+ GGIQ+ SQ++IGS+MA Q
Sbjct: 319 SASLL-SAVMVGIVGTTSTFISMLIVDKLGRRVLFISGGIQMFFSQILIGSIMAAQLGDH 377
Query: 314 -----------LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSL 362
LVLIC+Y AGF + W PLGWLVPSEIFPLEIRSA +SITVAV LFT +
Sbjct: 378 GEISKKYAYLILVLICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVAVNFLFTFI 437
Query: 363 VAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVWRVHWFWRKIV 422
VAQT L+ML HFK G FFFFGGW++ MT FV+F LPETKNVPIEQMD+VWR H+FW++IV
Sbjct: 438 VAQTFLSMLCHFKYGTFFFFGGWVVIMTVFVYFLLPETKNVPIEQMDRVWREHFFWKRIV 497
Query: 423 DDTLPEKSN 431
D + K
Sbjct: 498 GDKIEGKQT 506
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225466031|ref|XP_002267655.1| PREDICTED: hexose carrier protein HEX6 [Vitis vinifera] gi|310877794|gb|ADP37128.1| hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust.
Identities = 288/491 (58%), Positives = 357/491 (72%), Gaps = 62/491 (12%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFD 60
+T+FVVLSC++A GG+IFGYDIGISGGVTSM+ FLKKFF EVY++MKEDTKISNYCKFD
Sbjct: 18 ITLFVVLSCMMAGMGGVIFGYDIGISGGVTSMDSFLKKFFPEVYKRMKEDTKISNYCKFD 77
Query: 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLIL 120
SQLL +FTSSLYIAGL+AS AS +T+ FGRK +IL GG FL SA+GGAA ++YM+IL
Sbjct: 78 SQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTILAGGAAFLIGSALGGAAFNVYMVIL 137
Query: 121 G---LNAPISLRN----------GTPKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGG 167
G L + N P++ G N GFQ + G LSANL+N+GT+KIKGG
Sbjct: 138 GRILLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSIGVGALSANLINFGTEKIKGG 197
Query: 168 WGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD 227
WGWR+SLA+A PASILT+G LFLPETP+S+IQR+ DY KAE ++Q VRGT DVQAELDD
Sbjct: 198 WGWRVSLALAAVPASILTLGALFLPETPNSLIQRSKDYGKAELMLQRVRGTNDVQAELDD 257
Query: 228 LIRQSSVSKNINHPFKKIIDRKYRPQL------------------------------LSE 257
L++ SS++K IN PFKKI+ RKYRPQL L
Sbjct: 258 LVKASSLAKTINDPFKKILQRKYRPQLVMAIAIPFFQQVTGINVIAFYAPVLFRAIGLGV 317
Query: 258 STSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ---- 313
S SLL SA+VTG +G ST + M++ DKLGR+VLFL+GGIQ+LVSQ+M+G ++A +
Sbjct: 318 SASLL-SAVVTGVVGMASTFISMLIVDKLGRRVLFLVGGIQMLVSQIMVGGILAAELGDH 376
Query: 314 -----------LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSL 362
L+LICVY AGF + W PLGWLVPSEIFPLEIRSAG+SITVAV +FT +
Sbjct: 377 GGVSKVYAFLVLLLICVYVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSITVAVSFIFTFI 436
Query: 363 VAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVWRVHWFWRKIV 422
VAQT L+ML HFK+G+FFFFGGW++ MT FV++ LPETK++PIEQMD+VW+ HWFW++IV
Sbjct: 437 VAQTFLSMLCHFKSGIFFFFGGWVVLMTAFVYYLLPETKSIPIEQMDRVWKEHWFWKRIV 496
Query: 423 DDTLPEKSNPN 433
+ E SNP
Sbjct: 497 VE---ELSNPK 504
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|47078687|gb|AAT09978.1| putative hexose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust.
Identities = 288/491 (58%), Positives = 357/491 (72%), Gaps = 62/491 (12%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFD 60
+T+FVVLSC++A GG+IFGYDIGISGGVTSM+ FLKKFF EVY++MKEDTKISNYCKFD
Sbjct: 18 ITLFVVLSCMMAGMGGVIFGYDIGISGGVTSMDSFLKKFFPEVYKRMKEDTKISNYCKFD 77
Query: 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLIL 120
SQLL +FTSSLYIAGL+AS AS +T+ FGRK +IL GG FL SA+GGAA ++YM+IL
Sbjct: 78 SQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTILAGGAAFLIGSALGGAAFNVYMVIL 137
Query: 121 G---LNAPISLRN----------GTPKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGG 167
G L + N P++ G N GFQ + G LSANL+N+GT+KIKGG
Sbjct: 138 GRILLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSIGVGALSANLINFGTEKIKGG 197
Query: 168 WGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD 227
WGWR+SLA+A PASILT+G LFLPETP+S+IQR+ DY KAE ++Q VRGT DVQAELDD
Sbjct: 198 WGWRVSLALAAVPASILTLGALFLPETPNSLIQRSKDYGKAELMLQRVRGTNDVQAELDD 257
Query: 228 LIRQSSVSKNINHPFKKIIDRKYRPQL------------------------------LSE 257
L++ SS++K IN PFKKI+ RKYRPQL L
Sbjct: 258 LVKASSLAKTINDPFKKILQRKYRPQLVMAIAIPFFQQVTGINVIAFYAPVLFRAIGLGV 317
Query: 258 STSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ---- 313
S SLL SA+VTG +G ST + M++ DKLGR+VLFL+GGIQ+LVSQ+M+G ++A +
Sbjct: 318 SASLL-SAVVTGVVGMASTFISMLIVDKLGRRVLFLVGGIQMLVSQIMVGGILAAELGDH 376
Query: 314 -----------LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSL 362
L+LICVY AGF + W PLGWLVPSEIFPLEIRSAG+SITVAV +FT +
Sbjct: 377 GGVSKVYAFLVLLLICVYVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSITVAVSFIFTFI 436
Query: 363 VAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVWRVHWFWRKIV 422
VAQT L+ML HFK+G+FFFFGGW++ MT FV++ LPETK++PIEQMD+VW+ HWFW++IV
Sbjct: 437 VAQTFLSMLCHFKSGIFFFFGGWVVLMTAFVYYLLPETKSIPIEQMDRVWKEHWFWKRIV 496
Query: 423 DDTLPEKSNPN 433
+ L SNP
Sbjct: 497 VEKL---SNPK 504
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539853|ref|XP_002510991.1| sugar transporter, putative [Ricinus communis] gi|223550106|gb|EEF51593.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 288/489 (58%), Positives = 357/489 (73%), Gaps = 59/489 (12%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFD 60
MT FV LSC++AA GG+IFGYDIG+SGGVTSM+PFLKKFF +VYRKMKEDT+ISNYCKFD
Sbjct: 18 MTSFVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFFPDVYRKMKEDTEISNYCKFD 77
Query: 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLIL 120
SQLL +FTSSLY+AGL+AS FAS+VTRAFGRK SIL+GG FL +A+GGAA+++YMLI
Sbjct: 78 SQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGAVFLAGAALGGAAVNVYMLIF 137
Query: 121 G---LNAPISLRN----------GTPKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGG 167
G L + N P++ G N GFQ V G LSANL+NYGT+KI+GG
Sbjct: 138 GRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSVGIGALSANLINYGTEKIEGG 197
Query: 168 WGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD 227
WGWRISLAMA PA+ILT G LFLPETP+S+IQR+ND+++A+ ++Q VRGT DVQAELDD
Sbjct: 198 WGWRISLAMAAVPAAILTFGALFLPETPNSLIQRSNDHERAKLMLQRVRGTTDVQAELDD 257
Query: 228 LIRQSSVSKNINHPFKKIIDRKYRPQL------------------------------LSE 257
LI+ S +S+ I HPFK I+ RKYRPQL L E
Sbjct: 258 LIKASIISRTIQHPFKNIMRRKYRPQLVMAVAIPFFQQVTGINVIAFYAPILFRTIGLEE 317
Query: 258 STSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ---- 313
S SLL S++VTG +G+ ST + M++ DKLGR+ LF+ GG+Q+ V+Q+M+GS+MA +
Sbjct: 318 SASLL-SSIVTGLVGSASTFISMLIVDKLGRRALFIFGGVQMFVAQIMVGSIMAAELGDH 376
Query: 314 -----------LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSL 362
L+LIC+Y AGF + W PLGWLVPSEIFPLEIRSAG+SI VAV LFT +
Sbjct: 377 GGIGKGYAYIVLILICIYVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSIVVAVSFLFTFV 436
Query: 363 VAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVWRVHWFWRKIV 422
VAQT L+ML HFK+G+FFFFGGW++ MT FVHF LPETK VPIE+MD VWR HWFW+KI+
Sbjct: 437 VAQTFLSMLCHFKSGIFFFFGGWVVVMTAFVHFLLPETKKVPIEKMDIVWRDHWFWKKII 496
Query: 423 DDTLPEKSN 431
+ E++N
Sbjct: 497 GEEAAEENN 505
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1708191|sp|Q07423.1|HEX6_RICCO RecName: Full=Hexose carrier protein HEX6 gi|467319|gb|AAA79857.1| hexose carrier protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 288/489 (58%), Positives = 357/489 (73%), Gaps = 59/489 (12%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFD 60
MT FV LSC++AA GG+IFGYDIG+SGGVTSM+PFLKKFF +VYRKMKEDT+ISNYCKFD
Sbjct: 18 MTSFVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFFPDVYRKMKEDTEISNYCKFD 77
Query: 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLIL 120
SQLL +FTSSLY+AGL+AS FAS+VTRAFGRK SIL+GG FL +A+GGAA+++YMLI
Sbjct: 78 SQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGXVFLAXAALGGAAVNVYMLIF 137
Query: 121 G---LNAPISLRN----------GTPKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGG 167
G L + N P++ G N GFQ V G LSANL+NYGT+KI+GG
Sbjct: 138 GRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSVGIGALSANLINYGTEKIEGG 197
Query: 168 WGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD 227
WGWRISLAMA PA+ILT G LFLPETP+S+IQR+ND+++A+ ++Q VRGT DVQAELDD
Sbjct: 198 WGWRISLAMAAVPAAILTFGALFLPETPNSLIQRSNDHERAKLMLQRVRGTTDVQAELDD 257
Query: 228 LIRQSSVSKNINHPFKKIIDRKYRPQL------------------------------LSE 257
LI+ S +S+ I HPFK I+ RKYRPQL L E
Sbjct: 258 LIKASIISRTIQHPFKNIMRRKYRPQLVMAVAIPFFQQVTGINVIAFYAPILFRTIGLEE 317
Query: 258 STSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ---- 313
S SLL S++VTG +G+ ST + M++ DKLGR+ LF+ GG+Q+ V+Q+M+GS+MA +
Sbjct: 318 SASLL-SSIVTGLVGSASTFISMLIVDKLGRRALFIFGGVQMFVAQIMVGSIMAAELGDH 376
Query: 314 -----------LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSL 362
L+LIC+Y AGF + W PLGWLVPSEIFPLEIRSAG+SI VAV LFT +
Sbjct: 377 GGIGKGYAYIVLILICIYVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSIVVAVSFLFTFV 436
Query: 363 VAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVWRVHWFWRKIV 422
VAQT L+ML HFK+G+FFFFGGW++ MT FVHF LPETK VPIE+MD VWR HWFW+KI+
Sbjct: 437 VAQTFLSMLCHFKSGIFFFFGGWVVVMTAFVHFLLPETKKVPIEKMDIVWRDHWFWKKII 496
Query: 423 DDTLPEKSN 431
+ E++N
Sbjct: 497 GEEAAEENN 505
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816021|emb|CAN72462.1| hypothetical protein VITISV_025873 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 287/491 (58%), Positives = 356/491 (72%), Gaps = 62/491 (12%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFD 60
+T+FVVLSC++A GG+IFGYDIGISGGVTSM+ FLKKFF VY++MKEDTKISNYCKFD
Sbjct: 18 ITLFVVLSCMMAGMGGVIFGYDIGISGGVTSMDSFLKKFFPXVYKRMKEDTKISNYCKFD 77
Query: 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLIL 120
SQLL +FTSSLYIAGL+AS AS +T+ FGRK +IL GG FL SA+GGAA ++YM+IL
Sbjct: 78 SQLLTSFTSSLYIAGLVASFVASWITKKFGRKPTILAGGAAFLIGSALGGAAFNVYMVIL 137
Query: 121 G---LNAPISLRN----------GTPKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGG 167
G L + N P++ G N GFQ + G LSANL+N+GT+KIKGG
Sbjct: 138 GRILLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSIGVGALSANLINFGTEKIKGG 197
Query: 168 WGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD 227
WGWR+SLA+A PASILT+G LFLPETP+S+IQR+ DY KAE ++Q VRGT DVQAELDD
Sbjct: 198 WGWRVSLALAAVPASILTLGALFLPETPNSLIQRSKDYGKAELMLQRVRGTNDVQAELDD 257
Query: 228 LIRQSSVSKNINHPFKKIIDRKYRPQL------------------------------LSE 257
L++ SS++K IN PFKKI+ RKYRPQL L
Sbjct: 258 LVKASSLAKTINDPFKKILQRKYRPQLVMAIAIPFFQQVTGINVIAFYAPVLFRAIGLGV 317
Query: 258 STSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ---- 313
S SLL SA+VTG +G ST + M++ DKLGR+VLFL+GGIQ+LVSQ+M+G ++A +
Sbjct: 318 SASLL-SAVVTGVVGMASTFISMLIVDKLGRRVLFLVGGIQMLVSQIMVGGILAAELGDH 376
Query: 314 -----------LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSL 362
L+LICVY AGF + W PLGWLVPSEIFPLEIRSAG+SITVAV +FT +
Sbjct: 377 GGVSKVYAFLVLLLICVYVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSITVAVSFIFTFI 436
Query: 363 VAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVWRVHWFWRKIV 422
VAQT L+ML HFK+G+FFFFGGW++ MT FV++ LPETK++PIEQMD+VW+ HWFW++IV
Sbjct: 437 VAQTFLSMLCHFKSGIFFFFGGWVVLMTAFVYYLLPETKSIPIEQMDRVWKEHWFWKRIV 496
Query: 423 DDTLPEKSNPN 433
+ E SNP
Sbjct: 497 VE---EXSNPK 504
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129904|ref|XP_002328832.1| predicted protein [Populus trichocarpa] gi|222839130|gb|EEE77481.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust.
Identities = 282/489 (57%), Positives = 346/489 (70%), Gaps = 65/489 (13%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFD 60
MT FV LSC++A+ GG+IFGYDIGISGGVTSMEPFLKKFF EVY +MKEDTKISNYCKFD
Sbjct: 18 MTWFVALSCMMASMGGVIFGYDIGISGGVTSMEPFLKKFFPEVYARMKEDTKISNYCKFD 77
Query: 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLIL 120
SQLL +FTSSLY+AGL+AS FAS++TR FGRK SIL GG FL+ SA+ GAA ++YMLI
Sbjct: 78 SQLLTSFTSSLYVAGLVASFFASSITRYFGRKPSILAGGAAFLSGSALNGAATNLYMLIF 137
Query: 121 G---LNAPISLRN-----------------GTPKHIGGFNIGFQVCVATGILSANLLNYG 160
G L + N P++ G N GFQ+C+A G+LSAN +N+G
Sbjct: 138 GRVLLGVGVGFANQAGAEPRRAVPLYLSEMAPPRYRGAINNGFQLCIAIGVLSANFINFG 197
Query: 161 TQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTAD 220
T+KI+GGWGWRISLAM PA+ LTIG LFLPETP+S+IQR ND QKA+ ++Q +RGT D
Sbjct: 198 TEKIEGGWGWRISLAMGAIPATFLTIGSLFLPETPNSLIQRFNDEQKAKTMLQRIRGTTD 257
Query: 221 VQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQL-------------------------- 254
V+AE +DLI+ S VSK+I HP KKII +KYRPQL
Sbjct: 258 VEAEFNDLIKASLVSKSIEHPIKKIIQKKYRPQLVMAIAIPFFQQVTGINVISFYAPILF 317
Query: 255 ----LSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVM 310
LSES SL+MSAL+ G +GT ST L M++ DKLGR+V+ + GG+Q+ VSQ+MIGS+M
Sbjct: 318 RTIGLSESVSLIMSALIAGVVGTASTFLSMLVVDKLGRRVMLICGGVQMFVSQIMIGSIM 377
Query: 311 ATQ---------------LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAV 355
A Q L +I +Y +GF + W PLGWLVPSEIFPLEIRS G+SI VAV
Sbjct: 378 AAQLGDHGSINKGYAYFVLTMISIYVSGFAWSWGPLGWLVPSEIFPLEIRSVGQSIVVAV 437
Query: 356 GLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVWRVH 415
+FT +VAQT LAML HFK+G+FFFFGGW+ MT FV+ LPETK VPIE MD+VWR H
Sbjct: 438 NFVFTFIVAQTFLAMLCHFKSGIFFFFGGWVAVMTAFVYLLLPETKKVPIEVMDRVWREH 497
Query: 416 WFWRKIVDD 424
WFW++IV++
Sbjct: 498 WFWKRIVEE 506
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356517750|ref|XP_003527549.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 289/480 (60%), Positives = 349/480 (72%), Gaps = 58/480 (12%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFD 60
+T V+LSC+VAA+GG+IFGYDIGISGGVTSM PFL+KFF +VY KMK+DTK+SNYCKFD
Sbjct: 18 ITSIVILSCMVAATGGIIFGYDIGISGGVTSMVPFLEKFFPDVYTKMKQDTKVSNYCKFD 77
Query: 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLIL 120
SQLL AFTSSLYIAGLIAS FAS+VTRAFGRK SIL+GG FL +A+GGAAL+IYMLIL
Sbjct: 78 SQLLTAFTSSLYIAGLIASFFASSVTRAFGRKPSILIGGAAFLIGAALGGAALNIYMLIL 137
Query: 121 GL------------NAPISLRN-GTPKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGG 167
G +AP+ L P++ G N GFQ+CV G+LSANL+N+GT+KIK G
Sbjct: 138 GRVMLGVGIGFANQSAPLYLSEMAPPRYRGAINTGFQLCVGIGVLSANLVNFGTEKIKAG 197
Query: 168 WGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD 227
WGWRISL MA PAS+LT G LFLPETP+SIIQ + ++QKA+ ++Q +RGT DVQ EL+D
Sbjct: 198 WGWRISLVMAAVPASMLTFGSLFLPETPNSIIQHDKNHQKAKLMLQRIRGTDDVQQELED 257
Query: 228 LIRQSSVSKNINHPFKKIIDRKYRPQL------------------------------LSE 257
LI S +S +I HPFK I+ RKYRPQL L E
Sbjct: 258 LIEASEMSNSIKHPFKNILHRKYRPQLVMAIAIPFFQQFTGINVISFYAPILFLTIGLGE 317
Query: 258 STSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ---- 313
S SLL+SA+VTG +GT ST + M++ D+LGR+VLF+ GGIQ+ SQV+IGS+MATQ
Sbjct: 318 SASLLLSAVVTGFVGTASTFISMLMVDRLGRRVLFISGGIQMFFSQVLIGSIMATQLGDH 377
Query: 314 -----------LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSL 362
LVLIC+Y AGF + W PLGWLVPSEIF LEIRSA +SITVAV FT +
Sbjct: 378 GEIDKKYAYLILVLICIYVAGFAWSWGPLGWLVPSEIFQLEIRSAAQSITVAVNFFFTFI 437
Query: 363 VAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVWRVHWFWRKIV 422
VAQT L ML HFK G FFFFGGW++ MT FV+ LPET+NVPIEQMD+VWR H+FW++IV
Sbjct: 438 VAQTFLIMLCHFKFGTFFFFGGWVVVMTAFVYLLLPETRNVPIEQMDRVWREHFFWKRIV 497
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224139190|ref|XP_002323002.1| predicted protein [Populus trichocarpa] gi|222867632|gb|EEF04763.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 286/482 (59%), Positives = 353/482 (73%), Gaps = 59/482 (12%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFD 60
MT FVVLSC++AA GG+IFGYDIGI+GGVTSMEPFL+KFF +VYRKMKEDT+ISNYCKFD
Sbjct: 19 MTWFVVLSCMMAAMGGVIFGYDIGITGGVTSMEPFLEKFFPKVYRKMKEDTEISNYCKFD 78
Query: 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLIL 120
SQLL +FTSS+Y+AG IAS FAS++T+AFGRK SIL+GG FL +A+GGAA ++YMLI
Sbjct: 79 SQLLTSFTSSMYVAGFIASFFASSITKAFGRKPSILLGGAAFLAGAALGGAAFNVYMLIF 138
Query: 121 G---LNAPISLRN----------GTPKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGG 167
G L + N P++ G N GFQ + G LSANL+NYGT+KIKGG
Sbjct: 139 GRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSIGIGALSANLINYGTEKIKGG 198
Query: 168 WGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD 227
WGWRISLA+A PA+ILT+G +FLPETP+S+IQ +D ++A+ ++Q VRGT DVQAELDD
Sbjct: 199 WGWRISLALAAVPATILTLGAVFLPETPNSLIQLTDDTERAKLMLQRVRGTEDVQAELDD 258
Query: 228 LIRQSSVSKNINHPFKKIIDRKYRPQL------------------------------LSE 257
LI+ SS+SK + HPFKKII RKYRPQL L E
Sbjct: 259 LIKASSISKTVEHPFKKIIKRKYRPQLVMAIAIPFFQQVTGINVIAFYAPILFRTIGLGE 318
Query: 258 STSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ---- 313
S S LMS++VTG +GT ST + M++ DKLGR+ LF+ GG+Q+LVSQ+M+G +MA Q
Sbjct: 319 SAS-LMSSVVTGIVGTGSTFISMLVVDKLGRRALFIFGGVQMLVSQIMVGGIMAAQLGDH 377
Query: 314 -----------LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSL 362
L+LIC+Y AGF++ W PLGWLVPSEIFPLEIRSAG+SI VAV LFT +
Sbjct: 378 GGIGGGYAYVVLILICIYVAGFSWSWGPLGWLVPSEIFPLEIRSAGQSIVVAVSFLFTFI 437
Query: 363 VAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVWRVHWFWRKIV 422
VAQT LAML HFK+G+FFFFGGW++ MT FV++FLPETKN PIE+MD+VWR H FW KIV
Sbjct: 438 VAQTFLAMLCHFKSGIFFFFGGWVVVMTAFVYYFLPETKNTPIEKMDRVWREHGFWNKIV 497
Query: 423 DD 424
+
Sbjct: 498 GE 499
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515367|ref|XP_003526372.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 271/484 (55%), Positives = 345/484 (71%), Gaps = 61/484 (12%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMK-EDTKISNYCKF 59
+T++VVLSC++AA GG+IFGYDIGI+GGVTSMEPFLKKFF +VY KMK D K+SNYC F
Sbjct: 18 ITLYVVLSCMMAAMGGVIFGYDIGITGGVTSMEPFLKKFFHKVYLKMKLADDKVSNYCVF 77
Query: 60 DSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLI 119
DSQLL +FTSSLY+AGL+ S FAS +T+AFGRK SI+VGG FL + +GGAA ++YMLI
Sbjct: 78 DSQLLTSFTSSLYVAGLVTSFFASYITKAFGRKPSIVVGGAAFLAGTGLGGAAFNVYMLI 137
Query: 120 LG---LNAPISLRN----------GTPKHIGGFNIGFQVCVATGILSANLLNYGTQKIKG 166
+G L + N P+ G N GFQ+ + G LSANL+NYGT+KI+G
Sbjct: 138 VGRLLLGVGVGFANQAVPLYLSEMALPRLRGAINNGFQLSIGIGALSANLINYGTEKIEG 197
Query: 167 GWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELD 226
GWGWR+SLAMA PAS+LT+G LFLPETP+S+IQR++D QKA+ ++Q +RG DVQAELD
Sbjct: 198 GWGWRMSLAMAAVPASVLTLGALFLPETPNSVIQRSHDKQKAKLMLQRIRGMEDVQAELD 257
Query: 227 DLIRQSSVSK-NINHPFKKIIDRKYRPQL------------------------------L 255
DLI+ SS SK N K I+ +YRPQL L
Sbjct: 258 DLIKASSPSKTNNKQSLKLILKGRYRPQLVMALAIPFFQQVTGINVIAFYAPLLFRTIGL 317
Query: 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ-- 313
ES SLL SA++TG +GT ST + M + DKLGR+ LF++GGIQ+ VSQ ++G +MA
Sbjct: 318 GESASLL-SAVMTGVVGTGSTFISMFVVDKLGRRTLFMIGGIQMFVSQCIVGGIMALHLK 376
Query: 314 -------------LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFT 360
LV+IC+Y AGF + W PLGWLVPSEIFPLEIRSAG+SITVAV +FT
Sbjct: 377 DHGGLSKGYAFVVLVMICIYVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSITVAVSFIFT 436
Query: 361 SLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVWRVHWFWRK 420
+VAQT L+ML HF++G+FFFFGGW++ MTTFV++FLPETK+VP+EQM+KVW+ HWFW++
Sbjct: 437 FIVAQTFLSMLCHFRSGIFFFFGGWVVVMTTFVYYFLPETKSVPLEQMEKVWQEHWFWKR 496
Query: 421 IVDD 424
IV +
Sbjct: 497 IVGE 500
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 437 | ||||||
| TAIR|locus:2151596 | 514 | AT5G61520 [Arabidopsis thalian | 0.860 | 0.731 | 0.435 | 4e-67 | |
| TAIR|locus:2202044 | 522 | STP1 "AT1G11260" [Arabidopsis | 0.869 | 0.727 | 0.423 | 2.8e-66 | |
| TAIR|locus:2132213 | 513 | STP7 "sugar transporter protei | 0.681 | 0.580 | 0.430 | 2.9e-64 | |
| TAIR|locus:2092286 | 514 | STP4 "sugar transporter 4" [Ar | 0.846 | 0.719 | 0.398 | 2.9e-64 | |
| TAIR|locus:2151074 | 526 | MSS1 "AT5G26340" [Arabidopsis | 0.867 | 0.720 | 0.399 | 4.2e-63 | |
| TAIR|locus:2166781 | 514 | STP11 "sugar transporter 11" [ | 0.851 | 0.723 | 0.381 | 5.4e-63 | |
| TAIR|locus:2011957 | 517 | STP9 "sugar transporter 9" [Ar | 0.855 | 0.723 | 0.394 | 1.6e-61 | |
| TAIR|locus:2092221 | 514 | AT3G19940 [Arabidopsis thalian | 0.853 | 0.725 | 0.384 | 5.5e-61 | |
| TAIR|locus:2009323 | 506 | AT1G34580 [Arabidopsis thalian | 0.867 | 0.749 | 0.384 | 2.2e-57 | |
| TAIR|locus:2195995 | 504 | STP14 "sugar transport protein | 0.855 | 0.742 | 0.355 | 2.5e-56 |
| TAIR|locus:2151596 AT5G61520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
Identities = 181/416 (43%), Positives = 249/416 (59%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKI---SN-- 55
+T FVV SC++AA GG+IFGYDIG+SGGV SM PFLK+FF +VY+ +ED + SN
Sbjct: 20 ITYFVVASCVMAAMGGVIFGYDIGVSGGVMSMGPFLKRFFPKVYKLQEEDRRRRGNSNNH 79
Query: 56 YCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDI 115
YC F+SQLL +FTSSLY++GLIA+L AS+VTR++GRK SI +GG +FL +A+GG+A ++
Sbjct: 80 YCLFNSQLLTSFTSSLYVSGLIATLLASSVTRSWGRKPSIFLGGVSFLAGAALGGSAQNV 139
Query: 116 YMLI-----LGL-------NAPISLRNGTP-KHIGGFNIGFQVCVATGILSANLLNYGTQ 162
MLI LG+ + P+ L P K+ G + GFQ+C+ G LSAN++NY TQ
Sbjct: 140 AMLIIARLLLGVGVGFANQSVPLYLSEMAPAKYRGAISNGFQLCIGIGFLSANVINYETQ 199
Query: 163 KIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQ 222
IK GW RISLA A PASILT+G LFLPETP+SIIQ D K E +++ VRGT DVQ
Sbjct: 200 NIKHGW--RISLATAAIPASILTLGSLFLPETPNSIIQTTGDVHKTELMLRRVRGTNDVQ 257
Query: 223 AELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMIL 282
EL DL+ SS S ++ F K++ RKYRP+L+ + + VTG I V+ P++
Sbjct: 258 DELTDLVEASSGSDTDSNAFLKLLQRKYRPELVM-ALVIPFFQQVTG-INVVAFYAPVLY 315
Query: 283 ADKLGRKVLFLLGGIQILVSQVMIGSV--MATQLVLICVYNAG--FTFLWWPLGWLVPSE 338
R V F G L+S ++ G V +T L ++ V G FL L LV
Sbjct: 316 -----RTVGF--GESGSLMSTLVTGIVGTSSTLLSMLVVDRIGRKTLFLIGGLQMLVSQV 368
Query: 339 IFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFG--GWLIAMTTF 392
+ + A V G++ V+ ++ + AG + +G GWL+ F
Sbjct: 369 TIGVIVMVAD----VHDGVIKEGY-GYAVVVLVCVYVAGFGWSWGPLGWLVPSEIF 419
|
|
| TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 174/411 (42%), Positives = 233/411 (56%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFD 60
+T FV+ +C+VAA GGLIFGYDIGISGGVTSM FLK+FF VYRK +ED + YC++D
Sbjct: 19 LTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQEDASTNQYCQYD 78
Query: 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLIL 120
S L FTSSLY+A LI+SL ASTVTR FGR+ S+L GG F + I G A ++MLI+
Sbjct: 79 SPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFCAGALINGFAKHVWMLIV 138
Query: 121 G----------LN--APISLRNGTP-KHIGGFNIGFQVCVATGILSANLLNYGTQKIKGG 167
G N P+ L P K+ G NIGFQ+ + GIL A +LNY KIKGG
Sbjct: 139 GRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGILVAEVLNYFFAKIKGG 198
Query: 168 WGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD 227
WGWR+SL AV PA I+TIG L LP+TP+S+I+R +++A+ ++ +RG DV E DD
Sbjct: 199 WGWRLSLGGAVVPALIITIGSLVLPDTPNSMIERGQ-HEEAKTKLRRIRGVDDVSQEFDD 257
Query: 228 LIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLG 287
L+ S S++I HP++ ++ RKYRP L L GI + P +L + +G
Sbjct: 258 LVAASKESQSIEHPWRNLLRRKYRPHLTMAVMIPFFQQLT--GINVIMFYAP-VLFNTIG 314
Query: 288 RKVLFLLGGIQILVSQVMIGSV-MATQLVLIC-VYNAGFTFLWWPLG--WLVPSEIFPLE 343
F L+S V+ GSV +A LV I V G FL+ G L+ +
Sbjct: 315 ----FTTDAS--LMSAVVTGSVNVAATLVSIYGVDRWGRRFLFLEGGTQMLICQAVVAAC 368
Query: 344 IRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFG--GWLIAMTTF 392
I A + G L A V+ + + AG + +G GWL+ F
Sbjct: 369 I-GAKFGVDGTPGEL-PKWYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIF 417
|
|
| TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
Identities = 139/323 (43%), Positives = 214/323 (66%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFD 60
+T +V+++C+VAA GG IFGYDIGISGGVTSM+ FL++FF VY K K+ + SNYCK+D
Sbjct: 23 VTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEEFFHTVYEKKKQAHE-SNYCKYD 81
Query: 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLI- 119
+Q LAAFTSSLY+AGL+++L AS +TR +GR+ASI+ GG +FL S + A+++ ML+
Sbjct: 82 NQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGSGLNAGAVNLAMLLA 141
Query: 120 ----LGLN-------APISLRNGTPKHI-GGFNIGFQVCVATGILSANLLNYGTQKIKGG 167
LG+ P+ L P H+ GG N+ FQ+ GI +AN++NYGTQ++K
Sbjct: 142 GRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQLATTIGIFTANMVNYGTQQLKP- 200
Query: 168 WGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD 227
WGWR+SL +A PA ++T+G FLPETP+S+++R ++ +++ +RGT +V AEL D
Sbjct: 201 WGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLT-ERGRRVLVKLRGTENVNAELQD 259
Query: 228 LIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLG 287
++ S ++ +I HPF+ I+ +++RPQL+ + + M ++TG I ++ P +L +G
Sbjct: 260 MVDASELANSIKHPFRNILQKRHRPQLVM-AICMPMFQILTG-INSILFYAP-VLFQTMG 316
Query: 288 RKVLFLLGGIQILVSQVMIGSVM 310
GG L S + G+V+
Sbjct: 317 ------FGGNASLYSSALTGAVL 333
|
|
| TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
Identities = 163/409 (39%), Positives = 238/409 (58%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFD 60
+T V ++C + A GGLIFGYD+GISGGVTSMEPFL++FF VY+KMK + + YC+FD
Sbjct: 19 LTPKVFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEFFPYVYKKMKSAHE-NEYCRFD 77
Query: 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLIL 120
SQLL FTSSLY+A L++SLFAST+TR FGRK S+ +GG TF SA G A +I ML++
Sbjct: 78 SQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTFFIGSAFNGFAQNIAMLLI 137
Query: 121 GL------------NAPISLRNGTPKHI-GGFNIGFQVCVATGILSANLLNYGTQKIKGG 167
G + P+ L P ++ G FN GFQV + GI+ A ++NY T ++KG
Sbjct: 138 GRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQVAIIFGIVVATIINYFTAQMKGN 197
Query: 168 WGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD 227
GWRISL +A PA ++ IG L LP+TP+S+I+R ++A++++Q +RGT +V E D
Sbjct: 198 IGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYT-EEAKEMLQSIRGTNEVDEEFQD 256
Query: 228 LIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLG 287
LI S SK + HP+K I+ +YRPQL+ L GI ++ P +L LG
Sbjct: 257 LIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQLT--GINVITFYAP-VLFQTLG 313
Query: 288 RKVLFLLGGIQILVSQVMIGSV--MATQLVLICVYNAGFTFLWWPLG-WLVPSEIFPLEI 344
G L+S ++ G + + T + + V G L+ G ++ S+I
Sbjct: 314 ------FGSKASLLSAMVTGIIELLCTFVSVFTVDRFGRRILFLQGGIQMLVSQI----- 362
Query: 345 RSAGKSITVAVGLLFTSLV----AQTVLAMLYHFKAGVFFFFG--GWLI 387
+ G I V G+ T + A ++A++ + AG + +G GWL+
Sbjct: 363 -AIGAMIGVKFGVAGTGNIGKSDANLIVALICIYVAGFAWSWGPLGWLV 410
|
|
| TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 164/411 (39%), Positives = 234/411 (56%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDT-KISNYCKF 59
+T V++SCI+AA+GGL+FGYD+G+SGGVTSM FL+KFF VYRK+ K SNYCK+
Sbjct: 19 ITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPVVYRKVVAGADKDSNYCKY 78
Query: 60 DSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLI 119
D+Q L FTSSLY+AGL A+ FAS TR GR+ ++L+ G F+ A+ A D+ MLI
Sbjct: 79 DNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFFIIGVALNAGAQDLAMLI 138
Query: 120 LG----------LN--APISLRNGTPKHI-GGFNIGFQVCVATGILSANLLNYGTQKIKG 166
G N P+ L P I GG NI FQ+ V GIL ANL+NYGT KIKG
Sbjct: 139 AGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTAKIKG 198
Query: 167 GWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELD 226
GWGWR+SL +A PA +LT+G L + ETP+S+++R + + +++ +RGT +V+ E
Sbjct: 199 GWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGR-LDEGKAVLRRIRGTDNVEPEFA 257
Query: 227 DLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKL 286
DL+ S ++K + HPF+ ++ R+ RPQL+ + +L + TG I + P +L L
Sbjct: 258 DLLEASRLAKEVKHPFRNLLQRRNRPQLVI-AVALQIFQQCTG-INAIMFYAP-VLFSTL 314
Query: 287 GRKVLFLLGGIQILVSQVMIGSV--MATQLVLICVYNAGFTFLWWPLG-WLVPSEIFPLE 343
G G L S V+ G+V ++T + + V G L G + S++
Sbjct: 315 G------FGSDASLYSAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAGVQMFFSQVVIAI 368
Query: 344 IRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFG--GWLIAMTTF 392
I G +T L A V+ M+ + A + +G GWLI TF
Sbjct: 369 I--LGVKVTDTSTNLSKGF-AILVVVMICTYVAAFAWSWGPLGWLIPSETF 416
|
|
| TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
Identities = 156/409 (38%), Positives = 243/409 (59%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDT-KISNYCKF 59
+T FV+++CIVAA GGL+FGYDIGISGGV SME FL KFF +V R+M+ + + YCK+
Sbjct: 20 VTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFPDVLRQMQNKRGRETEYCKY 79
Query: 60 DSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLI 119
D++LL FTSSLY+A L AS AST+TR FGRK S+++G FL+ + + G A+++ MLI
Sbjct: 80 DNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLAFLSGALLNGLAINLEMLI 139
Query: 120 LGL------------NAPISLRNGTPKHI-GGFNIGFQVCVATGILSANLLNYGTQKIKG 166
+G + P+ L P I G NIGFQ+ + GIL+AN++NY T K++
Sbjct: 140 IGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAITIGILAANIVNYVTPKLQN 199
Query: 167 GWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELD 226
G GWR+SL +A PA ++ +G FLP+TP+SI++R N +KA++++Q +RGT +V+ E +
Sbjct: 200 GIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNK-EKAKEMLQKIRGTMEVEHEFN 258
Query: 227 DLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKL 286
+L +K + HP+ I+ +YRPQL + T + +TG ++ I M A L
Sbjct: 259 ELCNACEAAKKVKHPWTNIMQARYRPQL-TFCTFIPFFQQLTG----INVI--MFYAPVL 311
Query: 287 GRKVLFLLGGIQILVSQVMIG--SVMATQLVLICVYNAGFTFLWWPLGWLVPSEIFPLEI 344
+ + F G L+S V+ G +V++T + + V G L+ G+ ++ +I
Sbjct: 312 FKTIGF--GNDASLISAVITGLVNVLSTIVSIYSVDKFGRRALFLQGGF----QMIVTQI 365
Query: 345 RSAGKSITVAVGLL----FTSLVAQTVLAMLYHFKAGVFFFFG--GWLI 387
+ G I G + + A +LA++ + AG + +G GWL+
Sbjct: 366 -AVGSMIGWKFGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLV 413
|
|
| TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 160/406 (39%), Positives = 229/406 (56%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFD 60
+TVFV+++CIVAA GGL+FGYD+GISGGVTSME FL KFF EV ++M E + + YCKFD
Sbjct: 21 VTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEARRETAYCKFD 80
Query: 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLIL 120
+QLL FTSSLY+A L +S AS VTR +GRK S+ VGG FL S A ++ MLI+
Sbjct: 81 NQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGSLFNAFATNVAMLIV 140
Query: 121 G---LNAPISLRN-GTPKHI---------GGFNIGFQVCVATGILSANLLNYGTQKIKGG 167
G L + N TP ++ G NIGFQ+ + GIL ANL+NYGT ++
Sbjct: 141 GRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILIANLINYGTSQMAKN 200
Query: 168 WGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD 227
GWR+SL +A PA I+ IG LP+TP+S+++R Y++A +++Q +RG +V E D
Sbjct: 201 -GWRVSLGLAAVPAVIMVIGSFVLPDTPNSMLERGK-YEQAREMLQKIRGADNVDEEFQD 258
Query: 228 LIRQSSVSKNINHPFKKIIDR-KYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKL 286
L +K +++P+K I + KYRP L+ S + GI + P +L L
Sbjct: 259 LCDACEAAKKVDNPWKNIFQQAKYRPALVFCSAIPFFQQIT--GINVIMFYAP-VLFKTL 315
Query: 287 GRKVLFLLGGIQILVSQVMIGSV--MATQLVLICVYNAGFTFLWWPLG-WLVPSEIFPLE 343
G L+S V+ G+V ++T + + V G L+ G ++ S+I
Sbjct: 316 G------FADDASLISAVITGAVNVVSTLVSIYAVDRYGRRILFLEGGIQMIVSQIVVGT 369
Query: 344 IRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFG--GWLI 387
+ K T G L T A +LA + + AG + +G GWL+
Sbjct: 370 LIGM-KFGTTGSGTL-TPATADWILAFICLYVAGFAWSWGPLGWLV 413
|
|
| TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 156/406 (38%), Positives = 229/406 (56%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFD 60
+T FV+++CIVAA GGL+FGYD+GISGGVTSME FL KFF +V +MK+ + YCKFD
Sbjct: 21 VTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQMKKAKHDTAYCKFD 80
Query: 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLIL 120
+Q+L FTSSLY+A L+AS AS +TR GRK S+ +GG FL + A+++ MLI+
Sbjct: 81 NQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAFAVNVSMLII 140
Query: 121 G---LNAPISLRN-GTPKHI---------GGFNIGFQVCVATGILSANLLNYGTQKIKGG 167
G L + N TP ++ G NIGFQ+ + GIL ANL+NYGT K+
Sbjct: 141 GRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILVANLINYGTSKM-AQ 199
Query: 168 WGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD 227
GWR+SL +A PA ++ IG LP+TP+S+++R + ++A+++++ +RG +V E D
Sbjct: 200 HGWRVSLGLAAVPAVVMVIGSFILPDTPNSMLERGKN-EEAKQMLKKIRGADNVDHEFQD 258
Query: 228 LIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLG 287
LI +K + +P+K I++ KYRP L+ S + GI + P +L LG
Sbjct: 259 LIDAVEAAKKVENPWKNIMESKYRPALIFCSAIPFFQQIT--GINVIMFYAP-VLFKTLG 315
Query: 288 RKVLFLLGGIQILVSQVMIGSV--MATQLVLICVYNAGFTFLWWPLGWLVPSEIFPLEIR 345
G L+S V+ G V ++T + + V G L+ G + I L +
Sbjct: 316 ------FGDDAALMSAVITGVVNMLSTFVSIYAVDRYGRRLLFLEGG--IQMFICQLLVG 367
Query: 346 S-AGKSI-TVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFG--GWLI 387
S G T G L T A +LA + + AG + +G GWL+
Sbjct: 368 SFIGARFGTSGTGTL-TPATADWILAFICVYVAGFAWSWGPLGWLV 412
|
|
| TAIR|locus:2009323 AT1G34580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 159/413 (38%), Positives = 229/413 (55%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFD 60
+T VV+SCIVAAS GLIFGYDIGISGGVT+M+PFL+KFF V +K E K + YC +D
Sbjct: 20 ITAAVVMSCIVAASCGLIFGYDIGISGGVTTMKPFLEKFFPSVLKKASE-AKTNVYCVYD 78
Query: 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLI- 119
SQLL AFTSSLY+AGL+ASL AS +T A+GR+ ++++GG TFL + I G A +I MLI
Sbjct: 79 SQLLTAFTSSLYVAGLVASLVASRLTAAYGRRTTMILGGFTFLFGALINGLAANIAMLIS 138
Query: 120 ----LGLN-------APISLRN-GTPKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGG 167
LG AP+ L P+ G FNIGF ++ G+++ANL+NYGT + G
Sbjct: 139 GRILLGFGVGFTNQAAPVYLSEVAPPRWRGAFNIGFSCFISMGVVAANLINYGTDSHRNG 198
Query: 168 WGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQI--VRGTADVQAEL 225
W RISL +A PA+I+T+G LF+ +TPSS++ R + ++++ V ADV+ EL
Sbjct: 199 W--RISLGLAAVPAAIMTVGCLFISDTPSSLLARGKHDEAHTSLLKLRGVENIADVETEL 256
Query: 226 DDLIRQSSVSKNINHPF--KKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILA 283
+L+R S ++ K I+ R+YRP L+ L GI TV+ +L
Sbjct: 257 AELVRSSQLAIEARAELFMKTILQRRYRPHLVVAVVIPCFQQLT--GI-TVNAFYAPVLF 313
Query: 284 DKLGRKVLFLLGGIQILVSQVMIGSVMATQLVL--ICVYNAGFTFLWWPLGWLVPSEIFP 341
+G G L++ ++G V L+L + + G FL+ G L+
Sbjct: 314 RSVG------FGSGPALIATFILGFVNLGSLLLSTMVIDRFGRRFLFIAGGILMLLCQIA 367
Query: 342 LEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFG--GWLIAMTTF 392
+ + A G + A TV+ +L + AG + +G WL+ F
Sbjct: 368 VAVLLAVTVGATGDGEMKKGY-AVTVVVLLCIYAAGFGWSWGPLSWLVPSEIF 419
|
|
| TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 147/414 (35%), Positives = 230/414 (55%)
Query: 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFD 60
+T + + +CIV + GG +FGYD+G+SGGVTSM+ FLK+FF +Y++ + ++YCK+D
Sbjct: 22 ITSYFIFACIVGSMGGSLFGYDLGVSGGVTSMDDFLKEFFPGIYKRKQMHLNETDYCKYD 81
Query: 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLIL 120
+Q+L FTSSLY AGLI++ AS VTR +GR+ SILVG +F I AA +I MLIL
Sbjct: 82 NQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSILVGSVSFFLGGVINAAAKNILMLIL 141
Query: 121 GL----------N--APISLRNGTPKHIGG-FNIGFQVCVATGILSANLLNYGTQKIKGG 167
G N P+ L P I G N FQ+ GIL ANL+NY T++I
Sbjct: 142 GRIFLGIGIGFGNQAVPLYLSEMAPAKIRGTVNQLFQLTTCIGILVANLINYKTEQIHP- 200
Query: 168 WGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD 227
WGWR+SL +A PA ++ +G L LPETP+S++++ +KA+ ++ VRGT +++AE D
Sbjct: 201 WGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGK-LEKAKAVLIKVRGTNNIEAEFQD 259
Query: 228 LIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLG 287
L+ S ++ + +PF+ ++ R+ RPQL+ + L +TG + ++ P ++ LG
Sbjct: 260 LVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQQLTG-MNSILFYAP-VMFQSLG 317
Query: 288 RKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNA---GFTFLWWPLG-----WLVPSEI 339
GG L+S + + + ++ +Y+A G FL ++V +
Sbjct: 318 ------FGGSASLISSTITNAALVVAAIM-SMYSADKFGRRFLLLEASVEMFCYMVVVGV 370
Query: 340 FPLEIR-SAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTF 392
L ++ GK + ++GL+ L+ VLA Y G GWL+ F
Sbjct: 371 -TLALKFGEGKELPKSLGLILVVLICLFVLA--YGRSWGPM----GWLVPSELF 417
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8L7R8 | STP3_ARATH | No assigned EC number | 0.4958 | 0.9565 | 0.8132 | yes | no |
| Q07423 | HEX6_RICCO | No assigned EC number | 0.5889 | 0.9839 | 0.8431 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 437 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 4e-61 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 9e-52 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 3e-33 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 3e-09 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-04 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 0.001 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 4e-61
Identities = 124/458 (27%), Positives = 199/458 (43%), Gaps = 64/458 (13%)
Query: 9 CIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFT 68
+VAA GG +FGYD G+ G ++ F K+F + + L
Sbjct: 2 ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTV---------LSGLIV 52
Query: 69 SSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALD--IYMLILG----- 121
S + LI SLFA + FGRK S+L+G F+ + + G A YMLI+G
Sbjct: 53 SIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112
Query: 122 -------LNAPISLRNGTPKHI-GGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRIS 173
+ P+ + PK + G +Q+ + GIL A ++ G K GWRI
Sbjct: 113 LGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIP 172
Query: 174 LAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDDLIR--- 230
L + PA +L IGLLFLPE+P ++ + ++A ++ +RG +DV E+ +
Sbjct: 173 LGLQFVPAILLLIGLLFLPESPRWLVLKGK-LEEARAVLAKLRGVSDVDQEIQEEKDSLE 231
Query: 231 --QSSVSKNINHPFKKIIDRK---------------------YRPQLLSESTSLLMSALV 267
+ + F+ R+ Y + E+ L S LV
Sbjct: 232 RSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLV 291
Query: 268 TGGIG---TVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ----------L 314
T +G V T + + L D+ GR+ L LLG + + +++G + +
Sbjct: 292 TIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAI 351
Query: 315 VLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHF 374
V I ++ A F W P+ W++ SE+FPL +R +I A L L+ +
Sbjct: 352 VFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAI 411
Query: 375 KAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVW 412
VF F G L+ FV FF+PETK +E++D+++
Sbjct: 412 GGYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 180 bits (460), Expect = 9e-52
Identities = 131/473 (27%), Positives = 201/473 (42%), Gaps = 80/473 (16%)
Query: 2 TVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDS 61
V L ++AA GGL+FGYD G+ GG ++ F KF +N + S
Sbjct: 23 YWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTS------------ANSDSYSS 70
Query: 62 QLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGA---ALDIYML 118
L S + G I +LFA ++ FGRK S+L+ F+ + + G AL + ML
Sbjct: 71 SLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEML 130
Query: 119 ILG------------LNAPISLRNGTPKHIGG-FNIGFQVCVATGILSANLLNYGTQKIK 165
I+G P+ L PK + G +Q+ + GIL A G +
Sbjct: 131 IVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLN 190
Query: 166 GGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAEL 225
GWRI L + + PA +L +GL FLPE+P ++ ++A K + +RGT+ EL
Sbjct: 191 NTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLV-GKGRVEEARKSLARLRGTSGEDKEL 249
Query: 226 DDLIR-------QSSVSKNINHPFKKIIDRKYRPQLL----------------------- 255
D + S + R+ R +L
Sbjct: 250 LDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPT 309
Query: 256 -------SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGS 308
S + L+S ++ G + T + + L D+ GR+ L L+G + + ++G
Sbjct: 310 IFENAGVSTDHAFLVS-IIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGI 368
Query: 309 VMATQ------------LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVG 356
+ A+ +V I ++ A F W P+ W++ SEIFPL +R G SI VA
Sbjct: 369 LGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAAN 428
Query: 357 LLFTSLVAQTVLAMLYHFKAGV-FFFFGGWLIAMTTFVHFFLPETKNVPIEQM 408
L +V ML G F FFGG + FV+FFLPETK +E++
Sbjct: 429 WLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 3e-33
Identities = 119/478 (24%), Positives = 191/478 (39%), Gaps = 93/478 (19%)
Query: 10 IVAASGGLIFGYDIG-ISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFT 68
+VA GGL+FGYD ISG V S L F+ + + E + LL
Sbjct: 15 LVATLGGLLFGYDTAVISGTVES----LNTVFVAP-QNLSES--------AANSLLGFCV 61
Query: 69 SSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGA----------------- 111
+S I +I + FGR+ S+ + F S A+G A
Sbjct: 62 ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFIS-ALGSAWPEFGFTSIGPDNTGYV 120
Query: 112 -ALDIYMLILGLN-------APISLRNGTPKHIGGFNIGF-QVCVATGILSANLLNYGTQ 162
IY +I G+ +P+ + P HI G + F Q + G L +NY
Sbjct: 121 PEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYF-- 178
Query: 163 KIKGG----W----GWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQI 214
I W GWR A PA + + L F+PETP ++ R ++AE I++
Sbjct: 179 -IARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQ-EQAEGILRK 236
Query: 215 VRGTADVQAELDDLIRQSSVSKNINHP------------------FKKIIDRK----YRP 252
+ G L + I+ S F++ + Y P
Sbjct: 237 IMGNTLATQALQE-IKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAP 295
Query: 253 QLL----SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGS 308
++ + + L+ ++ G I T+L ++ DK GRK L ++G + + + +G+
Sbjct: 296 EIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT 355
Query: 309 VMATQ------LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSL 362
TQ L+ + Y A F W P+ W++ SEIFP IR +I VA +
Sbjct: 356 AFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYF 415
Query: 363 VAQTVLAM------LYHFKAGV-FFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVWR 413
V+ T M + HF G ++ +G + F+ F+PETK +E+M+ +W
Sbjct: 416 VSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWE 473
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 72/395 (18%), Positives = 145/395 (36%), Gaps = 62/395 (15%)
Query: 60 DSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLT--SSAIGGAALDIYM 117
D+ + S ++ L+ S ++ FGRK +L+ +T +T S + + + +
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLL--STLVTAVSGVLTAFSPNYTV 182
Query: 118 LI---------LGLNAPISLRNGT---PKHIGG-FNIGFQVCVATGILSANLLNYGTQKI 164
+ +G ++ T PK QV + G++ L+ Y
Sbjct: 183 FLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP-- 240
Query: 165 KGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVR---GTADV 221
WR P + + F+PE+P +I + ++A KI+Q + G
Sbjct: 241 ----DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGR-IEEALKILQRIAKINGKKLP 295
Query: 222 QAELDDLIRQSSVSKNINHPFKKII-DRKYRPQLLSEST--------------------- 259
L + + S + F + R L
Sbjct: 296 AEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGG 355
Query: 260 SLLMSALVTGGIGTVSTILPMILADKLGRK----VLFLLGGIQILVSQVMIGSVMATQLV 315
++ + ++G + + ++ ++L D+LGR+ LL G+ +L+ + + +
Sbjct: 356 NIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTA 415
Query: 316 LICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVA---VGLLFTSLVAQTVLAMLY 372
L + G T + + +L +E++P +R+ G + VG + + + L +
Sbjct: 416 LAVLGKFGITSAFQMV-YLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY--LGEKW 472
Query: 373 HFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQ 407
F FGG + FLPETK VP+ +
Sbjct: 473 LFLP--LVLFGGLALLAGILT-LFLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 60/361 (16%), Positives = 112/361 (31%), Gaps = 51/361 (14%)
Query: 53 ISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAA 112
++ + S+ + + SL A ++ FGR+ +L+G F S + A
Sbjct: 25 LAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA 84
Query: 113 LDIYMLILG-------------LNAPISLRNGTPKHIGGFNIGFQVCVATGILSANLLNY 159
+++L++G A + PK G F G L LL
Sbjct: 85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGG 144
Query: 160 GTQKIKGGWGWRISLAMAVAPASILT-IGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGT 218
+ GWR + +L + L L + ++
Sbjct: 145 LLAES---LGWRWLFLILAILGLLLALLLLFLLRLLLLLALAFF--------LLSFGYYG 193
Query: 219 ADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTIL 278
+ + LS + + L+ +L G G + +L
Sbjct: 194 LLTYL--------PLYLQEVLG--------------LSAAEAGLLLSLF-GLGGILGALL 230
Query: 279 PMILADKLGRKVLFLLGG--IQILVSQVMIGSVMATQLVLICVYNAGFTFLWWPLGWLVP 336
+L+D+LGR+ L LL G + L ++ + L++ + +P +
Sbjct: 231 GGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLA 290
Query: 337 SEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHF-KAGVFFFFGGWLIAMTTFVHF 395
SE+ P E R + G L +L +L GVF + +
Sbjct: 291 SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350
Query: 396 F 396
Sbjct: 351 L 351
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 15/145 (10%)
Query: 258 STSLLMSALVTGGIGTVSTILPMI-------LADKLGRKVLFLLGGIQILVSQVMIGSVM 310
+ +L +SA + +S IL I L+D++GR+ + ++ + + V + +
Sbjct: 247 TQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMAL 306
Query: 311 ATQ------LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVA 364
L+ P+G +P E+FP E+R G S+ + A
Sbjct: 307 LDSGSFTLFFFLVLGMALIGGMYTGPMGSFLP-ELFPTEVRYTGASLAYNLAGAIFGGFA 365
Query: 365 QTVLAMLYHFKAGVFFFFGGWLIAM 389
+ A L + G +L A+
Sbjct: 366 PYIAAALVAMTGDW-YAIGYYLAAL 389
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 437 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.98 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.98 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.98 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.98 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.97 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.97 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.97 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.97 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.97 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.97 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.97 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.96 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.96 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.96 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.96 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.96 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.96 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.96 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.96 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.96 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.96 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.96 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.96 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.95 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.95 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.95 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.95 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.95 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.95 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.95 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.95 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.95 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.94 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.94 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.94 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.94 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.94 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.94 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.94 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.94 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.93 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.93 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.93 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.93 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.93 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.93 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.93 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.93 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.93 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.93 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.93 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.93 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.92 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.92 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.92 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.91 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.91 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.91 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.91 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.91 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.91 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.91 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.9 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.89 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.89 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.89 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.88 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.88 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.88 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.87 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.87 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.87 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.86 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.86 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.86 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.85 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.84 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.84 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.83 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.83 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.83 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.81 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.81 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.78 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.78 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.77 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.77 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.77 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.76 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.74 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.72 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.72 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.71 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.71 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.71 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.69 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.68 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.67 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.64 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.54 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.52 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.5 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.45 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.35 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.32 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.29 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.24 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.24 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.22 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.17 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.17 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.16 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.13 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.13 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.12 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.12 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.11 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.11 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.11 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.11 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.1 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.09 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.09 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.09 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.09 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.09 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.09 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.08 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.08 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.08 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.07 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.06 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.05 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.04 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.03 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.02 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.02 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.02 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.01 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.01 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.0 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.0 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 98.99 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.99 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.98 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.98 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.98 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.97 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.97 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 98.95 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.95 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.94 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.93 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.93 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.93 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.93 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.93 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.92 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.91 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.91 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.9 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.89 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.89 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.88 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.88 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.88 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.86 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.86 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.86 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.86 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.85 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.84 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.84 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.83 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.83 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.81 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.81 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.8 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.8 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.79 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.77 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.74 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.73 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.72 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.71 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.7 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.68 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.68 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.64 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.63 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.63 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.62 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.62 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.62 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.6 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.6 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.59 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.57 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.57 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.56 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.55 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.54 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.48 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.41 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.4 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.4 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.38 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.36 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.36 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.34 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.34 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.33 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.31 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.29 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.28 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.28 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.26 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.25 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.22 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.19 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.16 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.14 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.09 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.08 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.04 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.01 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 97.99 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.99 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.97 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.96 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 97.9 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 97.78 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.77 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.69 | |
| PRK11462 | 460 | putative transporter; Provisional | 97.68 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.5 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 97.46 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.34 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.3 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.25 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.2 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.17 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.16 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.12 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.0 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 96.91 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 96.84 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 96.77 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.75 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.31 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 96.28 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 96.04 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 95.53 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 95.15 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.06 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 94.27 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.17 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 94.17 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 94.11 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.0 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 93.73 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 93.73 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 92.98 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 92.39 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 92.29 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 92.07 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 91.58 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 88.92 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 88.89 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 87.17 | |
| KOG2881 | 294 | consensus Predicted membrane protein [Function unk | 85.96 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 85.92 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 83.26 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 81.99 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 80.84 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=316.23 Aligned_cols=406 Identities=24% Similarity=0.370 Sum_probs=337.4
Q ss_pred CchHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHH
Q 047673 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASL 80 (437)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~ 80 (437)
++++...++..+++++|.+||+.+.+|.. .+..++|.++.+.++.+.|...++ -+...+.+.+++.+|.++|++
T Consensus 5 ~t~~L~~~~~~~~~gsf~~Gy~~~~iNap---~~~i~~f~n~t~~~r~g~~~s~~~---~~~lwS~~vs~f~iG~~~Gs~ 78 (485)
T KOG0569|consen 5 LTRRLLLAVIVATLGSFQFGYNIGVVNAP---QELIKSFINETLIERYGLPLSDST---LDLLWSLIVSIFFIGGMIGSF 78 (485)
T ss_pred ccHHHHHHHHHHHHhchhhhhhheecCch---HHHHHHHHHHHHHHhcCCCCChHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 46788888999999999999999999876 477888887777776533222222 234578889999999999999
Q ss_pred HhhhhhhhhchhHHHHHHHHHHHHHHHHHhhc---cccceeeeee------------cchhhhhhcc-cccccchHHHHH
Q 047673 81 FASTVTRAFGRKASILVGGTTFLTSSAIGGAA---LDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQ 144 (437)
Q Consensus 81 ~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a---~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~ 144 (437)
..+.++||+|||..+.++.++..++.+++.++ +++++++++| ..+.|+.|.. ++.||....+.+
T Consensus 79 ~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~ 158 (485)
T KOG0569|consen 79 SSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQ 158 (485)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHH
Confidence 99999999999999999998888888887764 7899999999 7889999999 999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHh-hCCCHHHHHHHHHHHhCCccHHH
Q 047673 145 VCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQ-RNNDYQKAEKIMQIVRGTADVQA 223 (437)
Q Consensus 145 ~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 223 (437)
.+..+|.+++..++..-. ...+..|++.+.+..+++++.++...++||||||+.. +++ .++|++.++.+++..+.++
T Consensus 159 ~~~~~g~ll~~~~~l~~i-lGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~-~~~A~~sl~~y~G~~~~~~ 236 (485)
T KOG0569|consen 159 IGVVIGILLGQVLGLPSL-LGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGD-EEEARKALKFYRGKEDVEA 236 (485)
T ss_pred HHHHHHHHHHHHHccHHh-cCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCC-HHHHHHHHHHHhCCCcchh
Confidence 999999999988764321 1122469999999999999999999999999999998 566 9999999999999886555
Q ss_pred HHHHHHHHhhh---hhccccchhhhhcccccccc-c------------------------------ccchHHHHHHHHHH
Q 047673 224 ELDDLIRQSSV---SKNINHPFKKIIDRKYRPQL-L------------------------------SESTSLLMSALVTG 269 (437)
Q Consensus 224 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~------------------------------~~~~~~~~~~~~~~ 269 (437)
+.++.....+. .+....++.++++++..+.- . +.+.+ .+.+...+
T Consensus 237 ~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a-~~an~~~g 315 (485)
T KOG0569|consen 237 EIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEA-QYANLGIG 315 (485)
T ss_pred HHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 55443333222 22245678888875433322 1 56666 78899999
Q ss_pred HHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhhcccccccccccc
Q 047673 270 GIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ-----------LVLICVYNAGFTFLWWPLGWLVPSE 338 (437)
Q Consensus 270 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (437)
...++.++++.++.||+|||++++.+..++.+..+++....... +...+++...++.+.+|+.+.+.+|
T Consensus 316 ~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aE 395 (485)
T KOG0569|consen 316 IVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAE 395 (485)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHH
Confidence 99999999999999999999999999999888877765543211 4556677777888999999999999
Q ss_pred cCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHccc
Q 047673 339 IFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVWRVH 415 (437)
Q Consensus 339 ~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (437)
++|++.|+.+.++...++++.+++....+..+.+..|...++++.+.+.+..+++++++||||+|+.+|+.++.+++
T Consensus 396 Lf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 396 LFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred hCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999998889999999999999999999999999999998888765
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=300.75 Aligned_cols=400 Identities=24% Similarity=0.400 Sum_probs=290.7
Q ss_pred chHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHH
Q 047673 2 TVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLF 81 (437)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~ 81 (437)
.+++..++++++++.+.++||.+++++.. |.+.+.|.+ +..++++++..+.+++.+++.++..+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----------~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~ 74 (479)
T PRK10077 7 SSYIFSITLVATLGGLLFGYDTAVISGTV--ESLNTVFVA----------PQNLSESAANSLLGFCVASALIGCIIGGAL 74 (479)
T ss_pred chHHHHHHHHHHHHHHhcCcccceehHhH--HHHHHHhcc----------cccccccCChhHHHHHHHHHHHHHHHHHHH
Confidence 35678888999999999999999999765 788888843 234556889999999999999999999999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHhhc---------cc---cceeeeee------------cchhhhhhcc-cccc
Q 047673 82 ASTVTRAFGRKASILVGGTTFLTSSAIGGAA---------LD---IYMLILGL------------NAPISLRNGT-PKHI 136 (437)
Q Consensus 82 ~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a---------~~---~~~l~~~r------------~~~~~i~~~~-~~~r 136 (437)
+|+++||+|||+++.++.+++.++.++++++ ++ +..++++| ...++++|++ +++|
T Consensus 75 ~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r 154 (479)
T PRK10077 75 GGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIR 154 (479)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhh
Confidence 9999999999999999999999998888763 22 45677888 5678899999 9999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhcc-----CCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHHHH
Q 047673 137 GGFNIGFQVCVATGILSANLLNYGTQKI-----KGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKI 211 (437)
Q Consensus 137 ~~~~~~~~~~~~~G~~~~~~~~~~l~~~-----~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~ 211 (437)
++++++.+.+..+|.++++.++..+... ..+++||+.|++.+++.++..+..+++||+|+++..+++ .+++++.
T Consensus 155 g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~-~~~~~~~ 233 (479)
T PRK10077 155 GKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGK-QEQAEGI 233 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCC-HHHHHHH
Confidence 9999999999999999998887665421 124689999999888877777777789999998877777 7777666
Q ss_pred HHHHhCCccHHHHHHHHHHHhhhhhccccchh-------------hhhc------------ccccc-cccccchHHHHHH
Q 047673 212 MQIVRGTADVQAELDDLIRQSSVSKNINHPFK-------------KIID------------RKYRP-QLLSESTSLLMSA 265 (437)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~------------~~~~~-~~~~~~~~~~~~~ 265 (437)
.++..+.+......++.......+......+. ..+. +.... .-.+.... ....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~-~~~~ 312 (479)
T PRK10077 234 LRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIA-LLQT 312 (479)
T ss_pred HHHHcCChhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchH-HHHH
Confidence 66655444332222222211110000000000 0000 00000 00122334 5566
Q ss_pred HHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhccccccccccccc
Q 047673 266 LVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ------LVLICVYNAGFTFLWWPLGWLVPSEI 339 (437)
Q Consensus 266 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (437)
...++..+++.++.++++||+|||++++.+.++++++.+++....... ...++.+..+++....+..+.+++|.
T Consensus 313 ~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 392 (479)
T PRK10077 313 IIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEI 392 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhh
Confidence 667888899999999999999999999999998888877765443211 22233333344444556777888999
Q ss_pred CChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------Hhccc-chhhHHHHHHHHHHHHhhhccccCCCCCHHHHHHHH
Q 047673 340 FPLEIRSAGKSITVAVGLLFTSLVAQTVLAML------YHFKA-GVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVW 412 (437)
Q Consensus 340 ~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (437)
+|++.|+++.|+.+..+++++.+++.+++.+. +..++ ..+.++++.+.+..++.+++.||+++++.||.++++
T Consensus 393 ~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 472 (479)
T PRK10077 393 FPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALW 472 (479)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHH
Confidence 99999999999999999999999988776554 34443 345555666666666666778899999998888877
Q ss_pred ccc
Q 047673 413 RVH 415 (437)
Q Consensus 413 ~~~ 415 (437)
++.
T Consensus 473 ~~~ 475 (479)
T PRK10077 473 EPE 475 (479)
T ss_pred hhc
Confidence 654
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=303.36 Aligned_cols=391 Identities=18% Similarity=0.185 Sum_probs=275.5
Q ss_pred CchHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHH
Q 047673 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASL 80 (437)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~ 80 (437)
++++++.++.+++++.+.+|||.+.++.+. |.+..++. ..+.+.++.+.+++.+...++..++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~--~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ig~~ig~~ 74 (502)
T TIGR00887 10 FGWQHFRAIVIAGVGFFTDSYDLFCISLVT--KMLGYVYY-------------HGKGPLPSSVSAAVNGSASIGTLAGQL 74 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhc-------------cCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999998765 44433321 011245778889999999999999999
Q ss_pred HhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccc------cceeeeee------------cchhhhhhcc-cccccchHH
Q 047673 81 FASTVTRAFGRKASILVGGTTFLTSSAIGGAALD------IYMLILGL------------NAPISLRNGT-PKHIGGFNI 141 (437)
Q Consensus 81 ~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~------~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~ 141 (437)
++|+++||+|||+++.++.+++.++.++++++++ ++.++++| ..+.++.|++ +++|+++++
T Consensus 75 ~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~ 154 (502)
T TIGR00887 75 FFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMA 154 (502)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHH
Confidence 9999999999999999999999999999998876 67888899 5778999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc--------------------CCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhh
Q 047673 142 GFQVCVATGILSANLLNYGTQKI--------------------KGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQR 201 (437)
Q Consensus 142 ~~~~~~~~G~~~~~~~~~~l~~~--------------------~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~ 201 (437)
+.+.+..+|.++++.++..+... ..+++||++|.+.++++++.++..+++||||+|+..+
T Consensus 155 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~ 234 (502)
T TIGR00887 155 AVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADV 234 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99999999999999888755321 1125899999999999888888888999999999988
Q ss_pred CCCHHHHHHHHHHHhCCcc--HHHHHHHHHHHhhhhhccccchhhhhcc----ccccccc--------------------
Q 047673 202 NNDYQKAEKIMQIVRGTAD--VQAELDDLIRQSSVSKNINHPFKKIIDR----KYRPQLL-------------------- 255 (437)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-------------------- 255 (437)
+++++++.+.+++..+.+. ..++.++... .++..+.+++++++. ++.+..+
T Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 311 (502)
T TIGR00887 235 AKDVEQAASDMSAVLQVKIEAEPDEVEKAST---AVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQ 311 (502)
T ss_pred CcchHHHHHHHHHHhccccccCcccccchhc---cccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 7733445555555433211 0001000000 000001123333321 0000000
Q ss_pred ---------ccchH-----------HHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHH---
Q 047673 256 ---------SESTS-----------LLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMAT--- 312 (437)
Q Consensus 256 ---------~~~~~-----------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~--- 312 (437)
+.... .........++.+++.++.++++||+|||++++.+..+++++..++......
T Consensus 312 p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~ 391 (502)
T TIGR00887 312 KVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLST 391 (502)
T ss_pred HHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 10000 0012333445667788899999999999999888887777766655543211
Q ss_pred -HH-HHHHHHHHHhhhcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc----------c-cchh
Q 047673 313 -QL-VLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHF----------K-AGVF 379 (437)
Q Consensus 313 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----------g-~~~~ 379 (437)
.. ...+.+...++.+..+..+.+.+|.+|++.|+++.|+.+.++++++++++.+++.+.+.. + ...+
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 471 (502)
T TIGR00887 392 HGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVL 471 (502)
T ss_pred hHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHH
Confidence 11 222222222344566677788899999999999999999999999999999999998743 2 2345
Q ss_pred hHHHHHHHHHHHHhhhccccCCCCCHHHHHH
Q 047673 380 FFFGGWLIAMTTFVHFFLPETKNVPIEQMDK 410 (437)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (437)
+++++.+++..+ ..+++||+++++.||+++
T Consensus 472 ~i~~~~~~~~~i-~~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 472 EIFALFMFLGIL-FTLLIPETKGKSLEELSG 501 (502)
T ss_pred HHHHHHHHHHHH-HheEeccCCCCCHHhhhC
Confidence 556555555444 456779999999887654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=302.05 Aligned_cols=381 Identities=13% Similarity=0.121 Sum_probs=283.1
Q ss_pred chHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHH
Q 047673 2 TVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLF 81 (437)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~ 81 (437)
++++|.++++++++.+.+++|...++.+. |.+.+++ +++..+.+++.++++++.++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~il--p~i~~~~------------------gls~~~~g~l~s~~~lG~iiG~li 221 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVL--PSAEKDL------------------CIPDSGKGMLGLIVYLGMMVGAFF 221 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999888664 7777777 889999999999999999999999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHH
Q 047673 82 ASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVA 148 (437)
Q Consensus 82 ~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~ 148 (437)
+|+++||+|||++++++.++.++++++++++++++.++++| ...+++.|++ +++|++.+++..+++.
T Consensus 222 ~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~ 301 (742)
T TIGR01299 222 WGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWM 301 (742)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 6678899999 9999999999999999
Q ss_pred HHHHHHHHHHhhhhccC----------CCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHHHHHHHHhCC
Q 047673 149 TGILSANLLNYGTQKIK----------GGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGT 218 (437)
Q Consensus 149 ~G~~~~~~~~~~l~~~~----------~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~ 218 (437)
+|.++++.++..+.... ...+||+++++.+++.++.++..+++||||+|+..+++ .+++.+.++++++.
T Consensus 302 iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr-~~eA~~iL~~i~~~ 380 (742)
T TIGR01299 302 IGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGK-HDEAWMILKLIHDT 380 (742)
T ss_pred HHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCC-HHHHHHHHHHHhcC
Confidence 99999998876654321 12479999999998888888888899999999999999 89999888888665
Q ss_pred ccH-----HHH--HHHHHHHhhh------hhcc------------------ccchhhhhccccccccc------------
Q 047673 219 ADV-----QAE--LDDLIRQSSV------SKNI------------------NHPFKKIIDRKYRPQLL------------ 255 (437)
Q Consensus 219 ~~~-----~~~--~~~~~~~~~~------~~~~------------------~~~~~~~~~~~~~~~~~------------ 255 (437)
+.. ... .......... +... ...+.++++++++..++
T Consensus 381 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~ 460 (742)
T TIGR01299 381 NMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFG 460 (742)
T ss_pred CCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHH
Confidence 421 000 0000000000 0000 00122222222211111
Q ss_pred -------------cc-----------------------------------------------------------------
Q 047673 256 -------------SE----------------------------------------------------------------- 257 (437)
Q Consensus 256 -------------~~----------------------------------------------------------------- 257 (437)
..
T Consensus 461 yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (742)
T TIGR01299 461 YYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVT 540 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeecc
Confidence 00
Q ss_pred -------------------------------------------------c----hHHHHHHHHHHHHHHHHhhhHHHHhh
Q 047673 258 -------------------------------------------------S----TSLLMSALVTGGIGTVSTILPMILAD 284 (437)
Q Consensus 258 -------------------------------------------------~----~~~~~~~~~~~~~~~~~~~~~g~l~d 284 (437)
+ ........+..++.+++.++.++++|
T Consensus 541 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~D 620 (742)
T TIGR01299 541 SSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMD 620 (742)
T ss_pred ccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00123355667888999999999999
Q ss_pred hcCchhHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccccccccccccCChhhhhhHHHHHHHHHHHHHHHH
Q 047673 285 KLGRKVLFLLGGIQILVSQVMIGSVMATQ-LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLV 363 (437)
Q Consensus 285 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~ 363 (437)
|+|||+++.++.++.+++.+++.+..... .+...++..++..+..+....+++|++|++.|++++|+.+..+.+|++++
T Consensus 621 r~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiig 700 (742)
T TIGR01299 621 KIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLG 700 (742)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888887777654433 22222222222233445567788999999999999999999999999999
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHHHhhhccccCCCCC
Q 047673 364 AQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVP 404 (437)
Q Consensus 364 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (437)
|++.+.+.+.....++.+.+++. +++.++.+++||++++.
T Consensus 701 p~i~g~L~~~~~~~pf~i~a~~l-ll~~ll~~~LPET~~~~ 740 (742)
T TIGR01299 701 ILIFGSFVGITKAAPILFASAAL-ACGGLLALKLPDTRGQV 740 (742)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHhCCCCcccc
Confidence 99999887754334444444444 44444455668887764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=278.97 Aligned_cols=397 Identities=32% Similarity=0.569 Sum_probs=312.7
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCCh--hHHHHHHHHHHHHHHHHHH
Q 047673 3 VFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDS--QLLAAFTSSLYIAGLIASL 80 (437)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~s~~~l~~~i~~~ 80 (437)
+..........++.+..|++ +..+....+....+++...... ..+. .+.+++.++..++..++++
T Consensus 41 ~~~~~~~~~~~~~~~~fg~~-g~~g~~s~~~~~~~~~~~~~~~------------~~~~~~~~~s~~~s~~~lga~~g~l 107 (513)
T KOG0254|consen 41 PFVILLALVAALGGLLFGYD-GDIGGISGALDFLQRFASLYDL------------STGEYSVRQGLLTSILNLGALVGSL 107 (513)
T ss_pred eehHHHHHHHHHHHHHhCcc-cccccchhhHHHHHhccccccc------------ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 45677788889999999998 4333333223444443221111 1122 5779999999999999999
Q ss_pred HhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHH
Q 047673 81 FASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCV 147 (437)
Q Consensus 81 ~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~ 147 (437)
++|+++|++|||+.++++.+++.++.+++++++|+.+++++| ..+.|++|.. ++.||...+..+...
T Consensus 108 ~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~ 187 (513)
T KOG0254|consen 108 LAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFI 187 (513)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 8899999999 999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHHHHHHHHhC--CccHHHHH
Q 047673 148 ATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRG--TADVQAEL 225 (437)
Q Consensus 148 ~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 225 (437)
.+|..++..++....+. . ++||..+.+..+++++..+..+++||+|+|+.++++ .+++++.++++++ +.+...+.
T Consensus 188 ~~Gi~~~~~~~~~~~~~-~-~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~-~~~a~~~l~~l~g~~~~~~~~~~ 264 (513)
T KOG0254|consen 188 TIGILLGYCINYGTSKV-Y-AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGR-LEEAKRSLKRLRGLSPEDVEVEL 264 (513)
T ss_pred HHHHHHHHHHhhhhccC-C-ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCC-hHHHHHHHHHHhCCCCcchHHHH
Confidence 99999998777776544 2 589999999999999888888889999999999999 9999999999988 34555544
Q ss_pred HHHHHHhhhhh---ccccchhhhhccccccccc-----------------------------ccchHHHHHHHHHHHHHH
Q 047673 226 DDLIRQSSVSK---NINHPFKKIIDRKYRPQLL-----------------------------SESTSLLMSALVTGGIGT 273 (437)
Q Consensus 226 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 273 (437)
+........+. ..+..+.+++++...+... ..... .....+.++..+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~ 343 (513)
T KOG0254|consen 265 ELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNF 343 (513)
T ss_pred HHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHH
Confidence 44441111111 1111244444432222222 11122 456777788889
Q ss_pred HHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhccccccccccccc
Q 047673 274 VSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ--------------LVLICVYNAGFTFLWWPLGWLVPSEI 339 (437)
Q Consensus 274 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (437)
++..++.++.||+|||++++.+...+.++.+++....... +...+++...+..+..++.+.+.+|.
T Consensus 344 ~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEi 423 (513)
T KOG0254|consen 344 LGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEI 423 (513)
T ss_pred HHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhcc
Confidence 9999999999999999999999999999998877654321 56667777788889999999999999
Q ss_pred CChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHH-HhhhccccCCCCCHHHHHHHHcccc
Q 047673 340 FPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFK-AGVFFFFGGWLIAMTT-FVHFFLPETKNVPIEQMDKVWRVHW 416 (437)
Q Consensus 340 ~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (437)
+|.+.|+++.++...++++.+.+....+....+..+ ...+..+.+++.+... +.++++||+|+++.||.++.+++..
T Consensus 424 fp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~ 502 (513)
T KOG0254|consen 424 FPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGI 502 (513)
T ss_pred CcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCC
Confidence 999999999999999999999999888888877766 6677777777777777 7889999999999999998876653
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=318.70 Aligned_cols=391 Identities=28% Similarity=0.564 Sum_probs=300.7
Q ss_pred HHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 047673 11 VAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFG 90 (437)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G 90 (437)
+..++.+.+|||.+.++.....+.....+..+.. .++++.+..+.+++.+...+|..+|++++|.++||+|
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~G 74 (451)
T PF00083_consen 4 IASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSS---------ESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYG 74 (451)
T ss_pred eeHHHHHHHHHHHHHHhhHHhhhhhhhccccccc---------cccccchHHHHHHHHHHHHhhhccccccccccccccc
Confidence 4567779999999999877643333333321111 1112225678999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcc---ccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHHHHHHH
Q 047673 91 RKASILVGGTTFLTSSAIGGAAL---DIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSA 154 (437)
Q Consensus 91 rr~~~~~~~~~~~~~~~~~~~a~---~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~ 154 (437)
||+.+.++.++..+++++.++++ |++.+.++| ..+.++.|.. +++|++..++.+.+..+|.+++
T Consensus 75 Rk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~ 154 (451)
T PF00083_consen 75 RKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLA 154 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999 999999999 7888999999 9999999999999999999999
Q ss_pred HHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHHHHHHHhhh
Q 047673 155 NLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDDLIRQSSV 234 (437)
Q Consensus 155 ~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (437)
..++..+....++++||+.+++..+++++.++...++||||+|+..+++ .+|+++.+++.++.+..+++.++.....+.
T Consensus 155 ~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~-~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~ 233 (451)
T PF00083_consen 155 SLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGR-DEEAEKVLRKLRGKEIEDEEIEEIKAEKKE 233 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccceeccccc-cccccccccccccccccccccccccccccc
Confidence 9888766444334579999999999988888888899999999999999 889999888876655444444333333222
Q ss_pred hhccccchhhhhcccc-ccccc----------------------------ccchHHHHHHHHHHHHHHHHhhhHHHHhhh
Q 047673 235 SKNINHPFKKIIDRKY-RPQLL----------------------------SESTSLLMSALVTGGIGTVSTILPMILADK 285 (437)
Q Consensus 235 ~~~~~~~~~~~~~~~~-~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 285 (437)
.+..+.+++++++.+. ++... +.... ........+..+++.+++.++.||
T Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 312 (451)
T PF00083_consen 234 SQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS-FLATLILGLVNFLGTLLAIFLIDR 312 (451)
T ss_pred ccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 2222234555555422 11111 11111 234455667778888888999999
Q ss_pred cCchhHHHHhHHHHHHHHHHHH--H--HHHH----H---HHHHHHHHHHhhhcccccccccccccCChhhhhhHHHHHHH
Q 047673 286 LGRKVLFLLGGIQILVSQVMIG--S--VMAT----Q---LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVA 354 (437)
Q Consensus 286 ~g~~~~~~~~~~~~~~~~~~~~--~--~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 354 (437)
+|||++++.+...++++.+.+. . .... . +...+++...+..+..++.+.+.+|.+|++.|+++.|+...
T Consensus 313 ~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~ 392 (451)
T PF00083_consen 313 FGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYA 392 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccc
Confidence 9999999988888887777664 1 1111 1 23333444455667788888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHhhhccccCCCCCHHHHHHHH
Q 047673 355 VGLLFTSLVAQTVLAMLYHFK-AGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMDKVW 412 (437)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (437)
++++++.+.+.+.+.+.+..+ ...+.++++++.+..++.++++|||++++.||+++.+
T Consensus 393 ~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 393 VGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred cccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 999999999999988888777 7788888888888888899999999999999998753
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=267.47 Aligned_cols=375 Identities=16% Similarity=0.170 Sum_probs=236.9
Q ss_pred HHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCCh--hHHHH--HHHHHHHHHHHHHHH
Q 047673 6 VLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDS--QLLAA--FTSSLYIAGLIASLF 81 (437)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~--~~~g~--~~s~~~l~~~i~~~~ 81 (437)
+.+.+.++++.++++||..+++... |.+.++|++. .++ ...+. +.++.++++.+++++
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~--~~i~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~ig~~~ 76 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVA--YALGKVFFPG----------------ADPSVQMIAALATFSVPFLIRPLGGLF 76 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhCCC----------------CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778899999999999998765 7777777532 122 12222 257888999999999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccce--------eeeee------------cchhhhhhcc-cccccchH
Q 047673 82 ASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYM--------LILGL------------NAPISLRNGT-PKHIGGFN 140 (437)
Q Consensus 82 ~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~--------l~~~r------------~~~~~i~~~~-~~~r~~~~ 140 (437)
+|+++||+|||+++.++.++++++++++++++|++. ++++| ...++++|++ +++||++.
T Consensus 77 ~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~ 156 (490)
T PRK10642 77 FGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMG 156 (490)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHH
Confidence 999999999999999999999999999999999875 78888 5678899999 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc-----CCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHHH-HHHH
Q 047673 141 IGFQVCVATGILSANLLNYGTQKI-----KGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEK-IMQI 214 (437)
Q Consensus 141 ~~~~~~~~~G~~~~~~~~~~l~~~-----~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~-~~~~ 214 (437)
++...+..+|.++++.+...+... ..++|||++|+++++++++.+++...+||+|++...+++ .++..+ ..++
T Consensus 157 ~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~-~~~~~~~~~~~ 235 (490)
T PRK10642 157 SWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDK-LEQGDREGLQD 235 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHh-hhhhccccccc
Confidence 999988888988888766554321 124699999999887777666667789999987543322 111000 0000
Q ss_pred HhCCccHHHHHHH----HHHHhh--h-hhccccchhhhhccccccc--ccccchHHHHHHHHHHHHHHHHhhhHHHHhhh
Q 047673 215 VRGTADVQAELDD----LIRQSS--V-SKNINHPFKKIIDRKYRPQ--LLSESTSLLMSALVTGGIGTVSTILPMILADK 285 (437)
Q Consensus 215 ~~~~~~~~~~~~~----~~~~~~--~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 285 (437)
.+.......... ...... . ......... .+.+.+... -.+.... ........++.+++.++.|+++||
T Consensus 236 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~l~~~~g~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr 312 (490)
T PRK10642 236 -GPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLL-TYMPSYLSHNLHYSEDHG-VLIIIAIMIGMLFVQPVMGLLSDR 312 (490)
T ss_pred -cccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000 000000 0 000000000 001111100 1133344 556666778888999999999999
Q ss_pred cCchhHHHHhHHHHHHHHHH-HHHHHH--HHHHHHHHH--HHHhhhcccccccccccccCChhhhhhHHHHHHHHHHHHH
Q 047673 286 LGRKVLFLLGGIQILVSQVM-IGSVMA--TQLVLICVY--NAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFT 360 (437)
Q Consensus 286 ~g~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~ 360 (437)
+|||+.+..+.+...+.... +..... ........+ ..+.+... .....+..|.+|++.|+++.|+.+.++.+++
T Consensus 313 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g 391 (490)
T PRK10642 313 FGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFT-GVMASTLPAMFPTHIRYSALAAAFNISVLVA 391 (490)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCccchHHHHHHHHHHHHHH
Confidence 99999887776544433222 221111 111111222 22222222 2234455789999999999999887788888
Q ss_pred HHHHHHHHHHHHhcc-cc-hhhHHHHHHHHHHHHhhhccccCCCCC
Q 047673 361 SLVAQTVLAMLYHFK-AG-VFFFFGGWLIAMTTFVHFFLPETKNVP 404 (437)
Q Consensus 361 ~~~~~~~~~~~~~~g-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (437)
.++|.+.+.+.+..+ +. .+++..+ ..+.+++..+++||++++.
T Consensus 392 ~~~p~i~g~l~~~~~~~~~~~~~~~~-~~~i~~~~~~~~pes~~~~ 436 (490)
T PRK10642 392 GLTPTLAAWLVESTQNLMMPAYYLMV-VAVIGLITGVTMKETANRP 436 (490)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHH-HHHHHHHHHHHhccccCCC
Confidence 899999999887654 33 2333333 3333344445568775543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=272.96 Aligned_cols=346 Identities=18% Similarity=0.234 Sum_probs=253.3
Q ss_pred cccCCcccCC---hhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee-----
Q 047673 51 TKISNYCKFD---SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL----- 122 (437)
Q Consensus 51 ~~~~~~~~~s---~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r----- 122 (437)
|.+.+|++++ +.+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.++.++++|++.++++|
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~ 192 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGM 192 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5677889998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCC
Q 047673 123 -------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPET 194 (437)
Q Consensus 123 -------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~es 194 (437)
....++.|++ +++|+++.++...+..+|.++++.++..+. +||+.|++.+++.++..+..+++||+
T Consensus 193 ~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~wr~~~~~~~i~~~~~~~~~~~~~es 266 (505)
T TIGR00898 193 GIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWRWLQLAVSLPTFLFFLLSWFVPES 266 (505)
T ss_pred hccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5667889999 999999999999999999999999987764 59999999888888777777889999
Q ss_pred hhHHHhhCCCHHHHHHHHHHHhCCccH--HHHHHHHH-HHhhhhhccccchhhhhccccccccc----------------
Q 047673 195 PSSIIQRNNDYQKAEKIMQIVRGTADV--QAELDDLI-RQSSVSKNINHPFKKIIDRKYRPQLL---------------- 255 (437)
Q Consensus 195 p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 255 (437)
|+|+..+++ .+++.+.+++..+.+.. ..+..... .....+...+.+++++++++..+...
T Consensus 267 p~~l~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (505)
T TIGR00898 267 PRWLISQGR-IEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYG 345 (505)
T ss_pred hHHHHHCCC-HHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888 88877776665443211 11100000 00000111123455555433221111
Q ss_pred ------cc-chHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHh-h
Q 047673 256 ------SE-STSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMAT--QLVLICVYNAGF-T 325 (437)
Q Consensus 256 ------~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~ 325 (437)
+. ... .......++..+++.++.+++.||+|||+.+..+.++.+++.+++...... ...........+ .
T Consensus 346 ~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 424 (505)
T TIGR00898 346 LVLDLGNLGGNI-YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGI 424 (505)
T ss_pred HhccccccCCCh-HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 11 112 345556678888999999999999999999999888888877766654432 111122222222 2
Q ss_pred hcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhccccCCCCCH
Q 047673 326 FLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPI 405 (437)
Q Consensus 326 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (437)
....+..+.+.+|.+|++.|+++.|+.+..+.+|+.++|.+.+ +.+......+.++++..++.++ ..+++||+++++.
T Consensus 425 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~lpet~~~~l 502 (505)
T TIGR00898 425 TSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGI-LTLFLPETKGVPL 502 (505)
T ss_pred HHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHH-HHHcCcCCCCCCC
Confidence 2334455677899999999999999999999999999999888 4443334555555555444444 4456788887765
Q ss_pred H
Q 047673 406 E 406 (437)
Q Consensus 406 ~ 406 (437)
+
T Consensus 503 ~ 503 (505)
T TIGR00898 503 P 503 (505)
T ss_pred C
Confidence 4
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-32 Score=258.87 Aligned_cols=386 Identities=31% Similarity=0.539 Sum_probs=270.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHh
Q 047673 3 VFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFA 82 (437)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 82 (437)
|+.+...+++.++.+..+++...+++.. |....++..+.. .+-+.+..+.+++.+++.++..++++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 91 (481)
T TIGR00879 24 WKVALLSLIAAIGGLMFGYDTGVIGGAL--ALPAFEFKFTSA----------NSDSYSSSLWGLVVSIFLVGGFIGALFA 91 (481)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhhh--hcHHHHHhcCCc----------ccCCCChhHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777778889999999988765 555555522111 1114679999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHhhcc---ccceeeeee------------cchhhhhhcc-cccccchHHHHHHH
Q 047673 83 STVTRAFGRKASILVGGTTFLTSSAIGGAAL---DIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVC 146 (437)
Q Consensus 83 g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~---~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~ 146 (437)
|+++||+|||+++.++.+++.++.+++.++. +++.++++| ....++.|++ +++|++++++++.+
T Consensus 92 g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 171 (481)
T TIGR00879 92 GWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLA 171 (481)
T ss_pred hHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHH
Confidence 9999999999999999999999999996654 344788888 4567889999 99999999999999
Q ss_pred HHHHHHHHHHHH---hhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHH
Q 047673 147 VATGILSANLLN---YGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQA 223 (437)
Q Consensus 147 ~~~G~~~~~~~~---~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (437)
..+|.++++.++ ..... ..+||+.|++.++..++..+..+++||+|++...+++ .++.++..++..+.+....
T Consensus 172 ~~~G~~~~~~~~~~~~~~~~---~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 247 (481)
T TIGR00879 172 ITFGILVAYGFGSGKVSLNN---TLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGR-VEEARKSLARLRGTSGEDK 247 (481)
T ss_pred HHHHHHHHHHHHHHhhcCCC---CccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCC-hHHHHHHHHHHhCCCCCcH
Confidence 999999999998 44332 2489999999777777777777889999987766665 5554444444332221111
Q ss_pred H----HHHHHHHhhhh-hccccchhhhhcccc--ccc------------------------------ccccchHHHHHHH
Q 047673 224 E----LDDLIRQSSVS-KNINHPFKKIIDRKY--RPQ------------------------------LLSESTSLLMSAL 266 (437)
Q Consensus 224 ~----~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~------------------------------~~~~~~~~~~~~~ 266 (437)
. ..........+ ......+.+.++... .+. -.+.... .....
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~ 326 (481)
T TIGR00879 248 ELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHA-FLVSI 326 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHH-HHHHH
Confidence 0 00000000000 000011111111100 000 0034445 67777
Q ss_pred HHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHH-----------HH-HHHHHHHHHHHhhhcccccccc
Q 047673 267 VTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVM-----------AT-QLVLICVYNAGFTFLWWPLGWL 334 (437)
Q Consensus 267 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~ 334 (437)
...++.+++.++.++++||++||+.+..+..+.+++.+.+.... .. ......++..+++.+..+....
T Consensus 327 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (481)
T TIGR00879 327 IVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWV 406 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehh
Confidence 88888999999999999999999999888877777766665211 11 1333344444555556677677
Q ss_pred cccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHHhhhccccCCCCCH
Q 047673 335 VPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAG-VFFFFGGWLIAMTTFVHFFLPETKNVPI 405 (437)
Q Consensus 335 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (437)
+..|.+|++.|+++.++.+...++++++++.+.+.+.++.++. .+++.++++++.+++.+++.+|+++++.
T Consensus 407 ~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 407 IVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred hhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence 7789999999999999999999999999999999999887754 4555555556666666666777766554
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-32 Score=230.65 Aligned_cols=376 Identities=17% Similarity=0.167 Sum_probs=282.4
Q ss_pred chHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHH
Q 047673 2 TVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLF 81 (437)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~ 81 (437)
.++||........++..+.......+.+. |...+. ++.+..|..++....+.|..+++..
T Consensus 73 grfq~yl~~~ag~gwmad~m~~m~~s~i~--~~l~~~------------------w~~s~~q~~llt~~v~~gmllga~~ 132 (528)
T KOG0253|consen 73 GRFQWYLFFVAGMGWMADAMEMMLLSLIL--PALDEV------------------WGPSEGQAPLLTLSVFLGMLVGAMV 132 (528)
T ss_pred ccchhhHHHHhhhHHHHHHHHHHHHHHHH--HHHHhh------------------hchhhhhhhHHHHHHHhhhhhhhhh
Confidence 45677777777777777666555544332 333332 3789999999999999999999999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee-----------cchhhhhhcc-cccccchHHHHHHHHHH
Q 047673 82 ASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL-----------NAPISLRNGT-PKHIGGFNIGFQVCVAT 149 (437)
Q Consensus 82 ~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r-----------~~~~~i~~~~-~~~r~~~~~~~~~~~~~ 149 (437)
+|.++|++|||+.+.+..+..++...+.+.++|+..+.+.| ...++-.|.. ..+|...+-.. ..+.+
T Consensus 133 w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~wai 211 (528)
T KOG0253|consen 133 WGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAI 211 (528)
T ss_pred hheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHH
Confidence 99999999999999999999999999999999999999999 3334456666 67777777666 99999
Q ss_pred HHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHH-------
Q 047673 150 GILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQ------- 222 (437)
Q Consensus 150 G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 222 (437)
|.+....++....... ||||......++..+.....+++|||||++..+++ ++++.+.++++.+.|..+
T Consensus 212 g~v~ea~law~vm~~~---gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~-~~kAletL~kiArmNg~qlplgvl~ 287 (528)
T KOG0253|consen 212 GQVFEALLAWGVMSNF---GWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGD-DYKALETLHKIARMNGKQLPLGVLE 287 (528)
T ss_pred HHHHHHHHHHHHHHhh---hHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCC-hHHHHHHHHHHHHhcCCCCCcceee
Confidence 9999999998887665 89999888888888888888999999999999999 999988888877655211
Q ss_pred --------HHHHHHHHH-hhhhhccccchhhhhccccccccc--------------------------------------
Q 047673 223 --------AELDDLIRQ-SSVSKNINHPFKKIIDRKYRPQLL-------------------------------------- 255 (437)
Q Consensus 223 --------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 255 (437)
++..++.+. ....++......+++.++.++..+
T Consensus 288 ~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p 367 (528)
T KOG0253|consen 288 SSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLP 367 (528)
T ss_pred eehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcch
Confidence 111111111 111122334455555555444333
Q ss_pred -----------ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 047673 256 -----------SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAG- 323 (437)
Q Consensus 256 -----------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 323 (437)
+.... ..-..+..+..+.|.++.+++.||+|||+.+...++++.+..+++............++..-
T Consensus 368 ~e~e~~~~c~~s~~~d-YrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~ara 446 (528)
T KOG0253|consen 368 TELETRANCPLSVAKD-YRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARA 446 (528)
T ss_pred hHHHhhhcCCccchhH-HHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 33344 55667778899999999999999999999999999999888887776654443333333222
Q ss_pred hhhcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhccccCCCC
Q 047673 324 FTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNV 403 (437)
Q Consensus 324 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (437)
+.-+...+.+.|..|+||+..|+++.|.+...+++|+++.|.+. ...+...+.+..++.+++++.++..+++--|+++|
T Consensus 447 fisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR 525 (528)
T KOG0253|consen 447 FISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGR 525 (528)
T ss_pred HHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCC
Confidence 22345556689999999999999999999999999999998877 44444446677777777777777776766688887
Q ss_pred C
Q 047673 404 P 404 (437)
Q Consensus 404 ~ 404 (437)
.
T Consensus 526 ~ 526 (528)
T KOG0253|consen 526 S 526 (528)
T ss_pred C
Confidence 5
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-31 Score=247.72 Aligned_cols=370 Identities=17% Similarity=0.154 Sum_probs=229.4
Q ss_pred chHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChh---HHHHHHHHHHHHHHHH
Q 047673 2 TVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQ---LLAAFTSSLYIAGLIA 78 (437)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~---~~g~~~s~~~l~~~i~ 78 (437)
+++++..+..++++.+++++|...++... |.+.++|+|+ +.+.. +.+.+.+..+++..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ig 79 (432)
T PRK10406 17 TRRRIWAIVGASSGNLVEWFDFYVYSFCS--LYFAHIFFPS---------------GNTTTQLLQTAGVFAAGFLMRPIG 79 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCCC---------------CCchHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888899999999999988665 7788887532 12333 3444555666677799
Q ss_pred HHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccc--------eeeeee------------cchhhhhhcc-ccccc
Q 047673 79 SLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIY--------MLILGL------------NAPISLRNGT-PKHIG 137 (437)
Q Consensus 79 ~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~--------~l~~~r------------~~~~~i~~~~-~~~r~ 137 (437)
++++|+++||+|||+++..+.++++++++++++++++. .++++| ...++++|++ +++|+
T Consensus 80 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg 159 (432)
T PRK10406 80 GWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKG 159 (432)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCccc
Confidence 99999999999999999999999999999999999875 588888 5678899999 99999
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhccC-----CCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHHHHH
Q 047673 138 GFNIGFQVCVATGILSANLLNYGTQKIK-----GGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIM 212 (437)
Q Consensus 138 ~~~~~~~~~~~~G~~~~~~~~~~l~~~~-----~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~ 212 (437)
++.++.+.+...|.++++.+...+.... ..+|||++|+++++++++.++....+||+|++..++.+ + ....
T Consensus 160 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~~~---~-~~~~ 235 (432)
T PRK10406 160 FYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRALK---E-AGSL 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhhhc---c-cccH
Confidence 9999999898899888887765554321 13699999999888888777667778998764221111 0 0011
Q ss_pred HHHhCCccHHHHHHHHHHHhhhhhccccchh-hhhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhH
Q 047673 213 QIVRGTADVQAELDDLIRQSSVSKNINHPFK-KIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVL 291 (437)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 291 (437)
+++.++.......................|. ..+.+. .-.+..+. +.......+...++.++.|+++||++||+.
T Consensus 236 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~---~g~s~~~~-~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~ 311 (432)
T PRK10406 236 KGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNT---AGMHANVA-SGIMTAALFVFMLIQPLIGALSDKIGRRTS 311 (432)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence 1111111000000000000000000000111 011100 11233444 566666677778888899999999999998
Q ss_pred HHHhHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHHH-HHHHHH
Q 047673 292 FLLGGIQILVSQVMIGS-VM---ATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLF-TSLVAQ 365 (437)
Q Consensus 292 ~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~-~~~~~~ 365 (437)
+....++.++....+.. .. .......++....+.. ...+..+.+.+|.+|++.|+++.|+.+.++++. +...|.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~ 391 (432)
T PRK10406 312 MLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEY 391 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHH
Confidence 77665544333322221 11 1111111111111111 122344566789999999999999999887753 444555
Q ss_pred HHHHHHHhcc-cchhhHHHHHHHHHHHHhhhcc
Q 047673 366 TVLAMLYHFK-AGVFFFFGGWLIAMTTFVHFFL 397 (437)
Q Consensus 366 ~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 397 (437)
+.+ +.+..+ +...+++.+...+.+.+..+++
T Consensus 392 ~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 392 VAL-SLKSIGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHH-HHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 555 555555 4444444444444444443433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-31 Score=234.44 Aligned_cols=361 Identities=15% Similarity=0.106 Sum_probs=263.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHh
Q 047673 3 VFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFA 82 (437)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 82 (437)
+..+..++.++++.|..+.+..+...++ |++.++| |+|..+.|++.|.|.++.++++|+.
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLL--p~iA~dl------------------~vs~~~aG~lis~yAl~~ai~ap~l 68 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLL--PPIAADL------------------GVSEGAAGQLITAYALGVALGAPLL 68 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhch--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999998888776 8888888 8999999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHH
Q 047673 83 STVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVAT 149 (437)
Q Consensus 83 g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~ 149 (437)
..++||+.||++++..+.++.++.+++++++||+.++++| ...++..+.. |++|++++++...+..+
T Consensus 69 ~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tl 148 (394)
T COG2814 69 ALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTL 148 (394)
T ss_pred HHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 6777889999 99999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHh-hccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHHHH
Q 047673 150 GILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIG-LLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDDL 228 (437)
Q Consensus 150 G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~-~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (437)
+.++|.+++.++.+.. |||..|++.+..+++.++. +..+| |+... +.+ ..+.++..+.+++.+-........
T Consensus 149 A~v~GvPLGt~ig~~~---GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~-~~~-~~~~~~~~~~l~~p~v~~~l~~t~ 221 (394)
T COG2814 149 ATVLGVPLGTFLGQLF---GWRATFLAIAVLALLALLLLWKLLP--PSEIS-GSL-PGPLRTLLRLLRRPGVLLGLLATF 221 (394)
T ss_pred HHHHhccHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHhCC--CccCC-CCC-CcchhHHHHHhcCchHHHHHHHHH
Confidence 9999999999998765 8999999988777776554 56678 21100 111 112222233333222111111110
Q ss_pred HHHhhhhhccccchhhhhccccccc-ccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHH
Q 047673 229 IRQSSVSKNINHPFKKIIDRKYRPQ-LLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIG 307 (437)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 307 (437)
.... .........++..... -++.+.. ......++++.++|..++|++.|| +.|+.+.....+.++..+.+.
T Consensus 222 l~~~-----g~F~~ftYi~P~L~~v~g~s~~~v-s~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~ 294 (394)
T COG2814 222 LFMT-----GHFALYTYIRPFLESVAGFSVSAV-SLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALT 294 (394)
T ss_pred HHHc-----chhhhHHhHHHHHHHccCCCHhHH-HHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHH
Confidence 0000 0001111111111111 1155566 889999999999999999999999 888888888888888888777
Q ss_pred HHHHHH-HHHHHHHHHHhhhccccc-ccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHH
Q 047673 308 SVMATQ-LVLICVYNAGFTFLWWPL-GWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGW 385 (437)
Q Consensus 308 ~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 385 (437)
+..... .....++..++.....+. .....++ .-++.+..+.++.....++|..++..+.|.+.|+.|+......++.
T Consensus 295 ~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~ 373 (394)
T COG2814 295 FTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAA 373 (394)
T ss_pred HhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 766654 222233333333322222 2233344 3357789999999999999999999999999999887777667666
Q ss_pred HHHHHHHhhhccc
Q 047673 386 LIAMTTFVHFFLP 398 (437)
Q Consensus 386 ~~~~~~~~~~~~~ 398 (437)
..+.+....+...
T Consensus 374 l~~~a~~~~~~~~ 386 (394)
T COG2814 374 LLLLALLLALLSA 386 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-31 Score=247.58 Aligned_cols=354 Identities=15% Similarity=0.112 Sum_probs=249.4
Q ss_pred CchHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHH
Q 047673 1 MTVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASL 80 (437)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~ 80 (437)
+++++|.....+.++.+.++++....+++. |.+.+++ |+++.+.+++.+++.++..++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~------------------~~s~~~~g~~~~~~~~~~~~~~~ 65 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVL--AEVAGEF------------------GLTTVDAASLISAALISRWFGAL 65 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCChhhHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999998765 7777777 88999999999999999999999
Q ss_pred HhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHH
Q 047673 81 FASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCV 147 (437)
Q Consensus 81 ~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~ 147 (437)
+.|+++||+|||+++..+.++.++++++++++++++.+++.| ...+++.|++ +++|+++.++.+.+.
T Consensus 66 ~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 145 (405)
T TIGR00891 66 MFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGY 145 (405)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 4567789999 999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHHHHHHHHhCCcc-HHHHHH
Q 047673 148 ATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTAD-VQAELD 226 (437)
Q Consensus 148 ~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 226 (437)
.+|.++++.+++.+.+..+ .+||+.|++.++..++.++....+||++++..++++ .++..+..++..+.+. .+...+
T Consensus 146 ~~g~~~~~~l~~~l~~~~~-~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 223 (405)
T TIGR00891 146 AVGAVVAAQVYSLVVPVWG-DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAG-KALVRTMVDILYGGEHRIANIVM 223 (405)
T ss_pred HHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhh-hhhhhhHHHHHhccchhhhhhhh
Confidence 9999999999888775432 259999998877777766666778998765432222 2111122222111111 000000
Q ss_pred HHHHHhhhhhcccc------------------chhhhhcccccc--cccccchHHHHHHHHHHHHHHHHhhhHHHHhhhc
Q 047673 227 DLIRQSSVSKNINH------------------PFKKIIDRKYRP--QLLSESTSLLMSALVTGGIGTVSTILPMILADKL 286 (437)
Q Consensus 227 ~~~~~~~~~~~~~~------------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 286 (437)
+............. .....+ +.+.. .-.+..+. +.......++.+++.++.+++.||+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~-~~~~~~~~~~~~~g~~~~g~l~dr~ 301 (405)
T TIGR00891 224 TLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLL-PTYLKADLGLSPHTV-ANIVVFSNIGAIVGGCVFGFLGDWL 301 (405)
T ss_pred hhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhh-HHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000000000000 000000 00000 01244555 6777888899999999999999999
Q ss_pred CchhHHHHhHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHhhhcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHH
Q 047673 287 GRKVLFLLGGIQILVSQVMIGSV-MATQLVLIC-VYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVA 364 (437)
Q Consensus 287 g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~ 364 (437)
|||+.+..+.....+........ .......+. ........+..+....++.|.+|++.|++++|+.+.+.++++.++|
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~ 381 (405)
T TIGR00891 302 GRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAP 381 (405)
T ss_pred CchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHH
Confidence 99998887766553333222221 111122222 2222222333444456678999999999999999999999999999
Q ss_pred HHHHHHHHhcc-cch
Q 047673 365 QTVLAMLYHFK-AGV 378 (437)
Q Consensus 365 ~~~~~~~~~~g-~~~ 378 (437)
++.|.+.|+.| +..
T Consensus 382 ~~~g~l~~~~g~~~~ 396 (405)
T TIGR00891 382 IIGALLAQRLDEYGT 396 (405)
T ss_pred HHHHHHHHhccccch
Confidence 99999999888 543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-31 Score=246.45 Aligned_cols=365 Identities=17% Similarity=0.108 Sum_probs=252.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHh
Q 047673 3 VFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFA 82 (437)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 82 (437)
+++|.+..++.+..+.+++|....+... |.+.+++ |+++.+.|++.+.+.++..+++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------~~s~~~~g~~~~~~~~~~~~~~~~~ 70 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAA--PRMAQEF------------------GLDVAQMGWAFSAGILGLLPGALLG 70 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999988664 7777777 8899999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHH
Q 047673 83 STVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVAT 149 (437)
Q Consensus 83 g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~ 149 (437)
|+++||+|||+++..+.++..++.+++++++|++.+++.| ...+++.|++ +++|++++++.+.+..+
T Consensus 71 g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 150 (406)
T PRK11551 71 GRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPF 150 (406)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 4457789999 89999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHH-HhhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHHH-
Q 047673 150 GILSANLLNYGTQKIKGGWGWRISLAMAVAPASILT-IGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD- 227 (437)
Q Consensus 150 G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~-~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 227 (437)
|..+++.++..+.+. .+||+.|++.++..++.. +...++||+|++..++++ .++.++..+...+..........
T Consensus 151 g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 226 (406)
T PRK11551 151 GGALASVIGVLAAGD---AAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA-GKQRAPVLRALFGEGRATATLLLW 226 (406)
T ss_pred HHHHHHHHHHHHccc---cCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc-chhhhhhHHHHhhhhhhhHHHHHH
Confidence 999999998776643 489999998776554443 345668998865433222 11111111111111100000000
Q ss_pred HHHHh-hhhhccccchhhhhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHH
Q 047673 228 LIRQS-SVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMI 306 (437)
Q Consensus 228 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 306 (437)
..... .........+...+. ...-.+.... +.......++.++++++.|++.||+|+|+.+..+.+...++.+.+
T Consensus 227 ~~~~~~~~~~~~~~~~~p~~~---~~~g~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 302 (406)
T PRK11551 227 ISYFFTLIVLYFLLNWLPSLL---VGQGLSRSQA-GLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAAL 302 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HhCCCChhhh-hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 00000 000000000100110 0111245555 778888889999999999999999999998887666666655555
Q ss_pred HHHHHHHHHHHHHHHHHhh-hcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHH
Q 047673 307 GSVMATQLVLICVYNAGFT-FLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFK-AGVFFFFGG 384 (437)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~ 384 (437)
.............+..++. .+..+....+..|.+|++.|+++.|+.+...++++.++|.+.|.+.++.+ +...+...+
T Consensus 303 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~ 382 (406)
T PRK11551 303 AAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASI 382 (406)
T ss_pred HhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHH
Confidence 4433322222222222222 23344556677899999999999999999999999999999999988755 333333333
Q ss_pred HHHHHHHHhhh
Q 047673 385 WLIAMTTFVHF 395 (437)
Q Consensus 385 ~~~~~~~~~~~ 395 (437)
.+.+.+.+..+
T Consensus 383 ~~~~~~~~~~~ 393 (406)
T PRK11551 383 PVILVAALAAL 393 (406)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-30 Score=245.89 Aligned_cols=352 Identities=14% Similarity=0.090 Sum_probs=239.9
Q ss_pred chHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHH
Q 047673 2 TVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLF 81 (437)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~ 81 (437)
+++++...+.+.++.+.++++.....+.. |.+.+++ |+++.+.+++.+++.++..+++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~------------------~~s~~~~~~~~~~~~~~~~l~~~~ 72 (426)
T PRK12307 13 TRPQKNALFSAWLGYVFDGFDFMLIFYIM--YLIKADL------------------GLTDMEGAFLATAAFIGRPFGGAL 72 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888899999999998887654 6777777 889999999999999999999999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHH
Q 047673 82 ASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVA 148 (437)
Q Consensus 82 ~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~ 148 (437)
.|+++||+|||+++..+.++.++++++++++++++.++++| ....++.|++ +++|+++.++...+..
T Consensus 73 ~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 152 (426)
T PRK12307 73 FGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFG 152 (426)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHh
Confidence 99999999999999999999999999999999999999999 4567789999 9999999999999999
Q ss_pred HHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHH--------HHHHHHhCCcc
Q 047673 149 TGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAE--------KIMQIVRGTAD 220 (437)
Q Consensus 149 ~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~--------~~~~~~~~~~~ 220 (437)
+|.++++.+...+.+. .+||+.|++..+..++.+......||++++..++.++.++.. ...++..+++.
T Consensus 153 lg~~~~~~l~~~l~~~---~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (426)
T PRK12307 153 IGNIIAAYFMPSFAEA---YGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQ 229 (426)
T ss_pred HHHHHHHHHHHHHccc---CCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhch
Confidence 9999999888777644 489999988665555444444456777654322111000000 00011111110
Q ss_pred HHHHHHHHHHHhhhhhccccchhhhhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHH
Q 047673 221 VQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQIL 300 (437)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 300 (437)
.............. ..........+.......-.+.... +.......++.++++++.+++.||++||+.+..+.++..
T Consensus 230 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~ 307 (426)
T PRK12307 230 FPLTLCVFIVLFSI-FGANWPIFGLLPTYLAGEGFDTGVV-SNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSF 307 (426)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 00000000000000 0000000000000000011234445 667777888999999999999999999998888777666
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHhh-hcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 047673 301 VSQVMIGSVMATQ--LVLICVYNAGFT-FLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAG 377 (437)
Q Consensus 301 ~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 377 (437)
+..+.+....... ....+++..++. .+..+....++.|.+|++.|++++|+.+.+.++++.++|.+.+.+.+..++.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~ 387 (426)
T PRK12307 308 LFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLG 387 (426)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHH
Confidence 5554443322211 122222222221 2233344456689999999999999999999999999999999999988754
Q ss_pred h
Q 047673 378 V 378 (437)
Q Consensus 378 ~ 378 (437)
.
T Consensus 388 ~ 388 (426)
T PRK12307 388 A 388 (426)
T ss_pred H
Confidence 3
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-32 Score=238.84 Aligned_cols=352 Identities=15% Similarity=0.058 Sum_probs=254.4
Q ss_pred chHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHH
Q 047673 2 TVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLF 81 (437)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~ 81 (437)
.++++.+...+.+|+..+++..-.++ .++|.++++. ++|.+|+|++.+.+.+++.++-.+
T Consensus 24 ~~~r~qif~~~fiGYa~fYl~RknF~--~a~p~l~e~~------------------~lsk~~lG~i~s~f~i~YG~sKf~ 83 (448)
T COG2271 24 KRWRIQIFLSIFIGYAAFYLTRKNFN--LAMPALIEDG------------------GLSKTQLGILGSAFSITYGVSKFV 83 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHh--hccHHHHHhc------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45788889999999999999998887 4458888887 789999999999999999999999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHH
Q 047673 82 ASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVA 148 (437)
Q Consensus 82 ~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~ 148 (437)
.|.++||.++|+.+.+++++.++..++++++++...+.+.. .+...+..|+ +++||+..++++.+.+
T Consensus 84 ~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shN 163 (448)
T COG2271 84 MGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHN 163 (448)
T ss_pred hhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhh
Confidence 99999999999999999999999999999999998887777 7788899999 9999999999999999
Q ss_pred HHHHHHHHHH--hhhhccCCCcchHHHHHhhHHHHHH-HHHhhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHH
Q 047673 149 TGILSANLLN--YGTQKIKGGWGWRISLAMAVAPASI-LTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAEL 225 (437)
Q Consensus 149 ~G~~~~~~~~--~~l~~~~~~~~wr~~f~~~~i~~~~-~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (437)
+|..+.+++. +.+... .+||..|++.++++++ +++.++..+|+|+.. ..+..++.++++....
T Consensus 164 iGGal~~~~~~la~~~~~---~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~---------GLP~ie~~~~d~~e~~-- 229 (448)
T COG2271 164 IGGALAPLVALLAFFAFH---GGWRAAFYFPGIIAIIVALILLFLLRDRPQSE---------GLPPIEEYRGDPLEIY-- 229 (448)
T ss_pred cccchHHHHHHHHHHHhc---cchhHHHHHHHHHHHHHHHHHHHHhCCCcccc---------CCCCHHHhhcCchhhh--
Confidence 9999999988 665543 3899999998877666 455566778887421 1111111111110000
Q ss_pred HHHHHHhhhhhc----cccchhhhhccccccccc---------------------------ccchHHHHHHHHHHHHHHH
Q 047673 226 DDLIRQSSVSKN----INHPFKKIIDRKYRPQLL---------------------------SESTSLLMSALVTGGIGTV 274 (437)
Q Consensus 226 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 274 (437)
+ .+.+.+ ...-++..++++..+.+. +...+ ....+.+-.++++
T Consensus 230 ~-----~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a-~~a~~lfE~agl~ 303 (448)
T COG2271 230 E-----EEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKA-NWAISLFEVAGLP 303 (448)
T ss_pred h-----hhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHH-HHHHHHHHHHhhH
Confidence 0 000000 000111222333222221 67777 8889999999999
Q ss_pred HhhhHHHHhhhc--CchhHHHHh-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhh-cccccccccccccCChhhhhhH
Q 047673 275 STILPMILADKL--GRKVLFLLG-GIQILVSQVMIGSVMAT--QLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAG 348 (437)
Q Consensus 275 ~~~~~g~l~d~~--g~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~ 348 (437)
|++++||++||+ |||....+. .+...++...+...+.. .+...+++..++.. +...+......|..|++..|++
T Consensus 304 G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA 383 (448)
T COG2271 304 GTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTA 383 (448)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccch
Confidence 999999999996 666655443 33444444455544433 24445555555443 3333445667899999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHh
Q 047673 349 KSITVAVGLL-FTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFV 393 (437)
Q Consensus 349 ~g~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 393 (437)
.|+...++++ |...+....+.+.|..||...++...+..+.+.+.
T Consensus 384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~ll 429 (448)
T COG2271 384 TGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILL 429 (448)
T ss_pred hchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHH
Confidence 9999999999 88888888999989888765444444444443333
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-32 Score=240.30 Aligned_cols=394 Identities=19% Similarity=0.195 Sum_probs=270.5
Q ss_pred chHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHH
Q 047673 2 TVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLF 81 (437)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~ 81 (437)
+|++...+.+...|.|.|+||...++.+. |-+...| .+-.+ -+ =++++...+.+..+..+|..+|+++
T Consensus 36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt--~il~~lY-~~~~~-------~~--g~~ps~i~~~Vn~~A~vGti~GQl~ 103 (538)
T KOG0252|consen 36 QWKHFKAIIIAGMGFFTDSYDLFSISLVT--KILGYLY-YHGDE-------SG--GHYPSGVLALVNAAALVGTIFGQLF 103 (538)
T ss_pred hHHHHHHHHHhhhhhcccchhhhhHHHHH--HHHHHHh-cCCCC-------CC--CcCCchHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999775 3333333 22111 11 1467888999999999999999999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHhhccc-------cceeeeee------------cchhhhhhcc-cccccchHH
Q 047673 82 ASTVTRAFGRKASILVGGTTFLTSSAIGGAALD-------IYMLILGL------------NAPISLRNGT-PKHIGGFNI 141 (437)
Q Consensus 82 ~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~-------~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~ 141 (437)
+|+++||+|||+++...++++.+++++++++.. ..++...| .+.+..+|.. .++||...+
T Consensus 104 FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~ia 183 (538)
T KOG0252|consen 104 FGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIA 183 (538)
T ss_pred HHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeE
Confidence 999999999999999999999999998887632 24566666 7788889999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc----CC--------CcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHH
Q 047673 142 GFQVCVATGILSANLLNYGTQKI----KG--------GWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAE 209 (437)
Q Consensus 142 ~~~~~~~~G~~~~~~~~~~l~~~----~~--------~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~ 209 (437)
..-+..++|.+.|.+++..+... .+ +.-||..|.+++++++..+..++.+|||+++..-..++.+++.
T Consensus 184 avFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~ 263 (538)
T KOG0252|consen 184 AVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA 263 (538)
T ss_pred EEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh
Confidence 88888888877777766655331 11 1249999999999999999999999999987633333233332
Q ss_pred HHHHHHhCCccHHHHHHHHHHHhhhhhccccc---hhhhhcccc---------ccccc---------------------c
Q 047673 210 KIMQIVRGTADVQAELDDLIRQSSVSKNINHP---FKKIIDRKY---------RPQLL---------------------S 256 (437)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---------~~~~~---------------------~ 256 (437)
+..++.... .+++-.........++.+ +...+..+. .|-++ .
T Consensus 264 ~d~~k~~~~-----~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~ 338 (538)
T KOG0252|consen 264 GDMKKVLSV-----DIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIP 338 (538)
T ss_pred hcccccccc-----ccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCC
Confidence 211111111 000000000000000001 111110000 00000 0
Q ss_pred cch-------HHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Q 047673 257 EST-------SLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ------LVLICVYNAG 323 (437)
Q Consensus 257 ~~~-------~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 323 (437)
... ..-....+.....++|.++...++|++|||+..+.+++++.+..+.+....+.. .+...+..++
T Consensus 339 ~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff 418 (538)
T KOG0252|consen 339 SANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFF 418 (538)
T ss_pred CcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHH
Confidence 000 101222333344455788888999999999999999999999988887766522 3333344444
Q ss_pred hhhcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hcccc-hhhHHHHHHHHHHHHhhhcc
Q 047673 324 FTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLY-----HFKAG-VFFFFGGWLIAMTTFVHFFL 397 (437)
Q Consensus 324 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~g~~-~~~~~~~~~~~~~~~~~~~~ 397 (437)
..++.+.....+.+|.+|++.|++..|+..+.+.+|++++...+.+..+ ..+.. .++++++ +...+++..+++
T Consensus 419 ~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~-~~~~gi~~T~l~ 497 (538)
T KOG0252|consen 419 GNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAG-CMLLGILFTLLI 497 (538)
T ss_pred HhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHH-HHHHhHheeEEe
Confidence 4556677778889999999999999999999999999999999999988 44543 4555554 455555666778
Q ss_pred ccCCCCCHHHHHHHHc
Q 047673 398 PETKNVPIEQMDKVWR 413 (437)
Q Consensus 398 ~~~~~~~~~~~~~~~~ 413 (437)
||++++++||++++.+
T Consensus 498 pEtk~~~leei~~e~~ 513 (538)
T KOG0252|consen 498 PETKGKSLEEISNEEE 513 (538)
T ss_pred ecccccCHHHhcChhh
Confidence 8999999998865443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-30 Score=248.45 Aligned_cols=352 Identities=14% Similarity=0.112 Sum_probs=244.3
Q ss_pred chHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHH
Q 047673 2 TVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLF 81 (437)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~ 81 (437)
++++|.....+.++.+.+++|....++.. |.+.+++ |+++.+.+++.+.+.+++.+++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~------------------~~s~~~~~~~~~~~~~~~~~~~~~ 74 (496)
T PRK03893 15 NRAQWKAFSAAWLGYLLDGFDFVLITLVL--TEVQGEF------------------GLTTVQAASLISAAFISRWFGGLL 74 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888899999999999999888654 6777777 889999999999999999999999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHH
Q 047673 82 ASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVA 148 (437)
Q Consensus 82 ~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~ 148 (437)
.|+++||+|||+.+.++.++.+++.++.++++|++.+++.| ....++.|++ +++|+++.++...+..
T Consensus 75 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 154 (496)
T PRK03893 75 LGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFS 154 (496)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 3456789999 9999999999999999
Q ss_pred HHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHHHHHHHHhCCcc-HHHHHHH
Q 047673 149 TGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTAD-VQAELDD 227 (437)
Q Consensus 149 ~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 227 (437)
+|..+++.+++.+.+. ++||+.|++..+..++.++....+||++++..++++ .++.++..+.....+. .......
T Consensus 155 ~g~~~~~~~~~~l~~~---~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 230 (496)
T PRK03893 155 IGAVVAAQVYSLVVPV---WGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAG-KAPVRTMVDILYRGEHRIINILLT 230 (496)
T ss_pred HHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccc-cccchhHHHHHhcchhHHHHHHHH
Confidence 9999999999887754 489999988766655555555667887654332222 1111111111111100 0000000
Q ss_pred ---------HHHHh---------------------hhh-hccccch-----------------hhhhccccc--cccccc
Q 047673 228 ---------LIRQS---------------------SVS-KNINHPF-----------------KKIIDRKYR--PQLLSE 257 (437)
Q Consensus 228 ---------~~~~~---------------------~~~-~~~~~~~-----------------~~~~~~~~~--~~~~~~ 257 (437)
..... ..+ ....... ...+.+.+. ..-.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~ 310 (496)
T PRK03893 231 LAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDP 310 (496)
T ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCH
Confidence 00000 000 0000000 000001111 011245
Q ss_pred chHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHH-HHHhhhcccccccc
Q 047673 258 STSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ--LVLICVY-NAGFTFLWWPLGWL 334 (437)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~ 334 (437)
.+. +.......++.+++.++.|++.||+|+|+.+..+..+..+..+.+....... ......+ ..+.+.+..+....
T Consensus 311 ~~~-g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (496)
T PRK03893 311 HTV-ANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPK 389 (496)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHH
Confidence 556 7888888999999999999999999999988877666555544333221111 1111212 12223333444455
Q ss_pred cccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 047673 335 VPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGV 378 (437)
Q Consensus 335 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 378 (437)
++.|.+|++.|++++|+.+....+++.++|.+.|.+.+..++..
T Consensus 390 ~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~ 433 (496)
T PRK03893 390 LIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGT 433 (496)
T ss_pred HHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHH
Confidence 67899999999999999999999999999999999999888653
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-30 Score=241.48 Aligned_cols=374 Identities=14% Similarity=0.155 Sum_probs=233.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCchH-HHHHHHHHhhhhcccccccCCcccCChhHHHHHH-----HHHHHHHHH
Q 047673 4 FVVLSCIVAASGGLIFGYDIGISGGVTSMEP-FLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFT-----SSLYIAGLI 77 (437)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~-----s~~~l~~~i 77 (437)
+++.+.....++.++++||...++.+. |. +.+++++ ++++. .+++. ++.+++..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~----------------~~~~~-~~~~~~~~~~~~~~~~~~~ 79 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGITA--ALVFNREFFP----------------QVSPA-MGTLAAFATFGVGFLFRPL 79 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCC----------------CCCcH-HHHHHHHHHHHHHHHHHhh
Confidence 456677888889999999999988654 33 3344432 22333 34443 456677889
Q ss_pred HHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccc--------eeeeee------------cchhhhhhcc-cccc
Q 047673 78 ASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIY--------MLILGL------------NAPISLRNGT-PKHI 136 (437)
Q Consensus 78 ~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~--------~l~~~r------------~~~~~i~~~~-~~~r 136 (437)
++++.|+++||+|||+++..+.++++++++++++++|+. .++++| ....++.|++ +++|
T Consensus 80 g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~r 159 (438)
T PRK09952 80 GGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKK 159 (438)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999999987 488888 4457899999 9999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhccC-----CCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHH--
Q 047673 137 GGFNIGFQVCVATGILSANLLNYGTQKIK-----GGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAE-- 209 (437)
Q Consensus 137 ~~~~~~~~~~~~~G~~~~~~~~~~l~~~~-----~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~-- 209 (437)
++..+..+.+..+|.+++..+...+.... .++|||++|++.+++.++.+......||+|++..++++ .++.+
T Consensus 160 g~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~-~~~~~~~ 238 (438)
T PRK09952 160 AFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHE-QAAAKKR 238 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhh-ccccccc
Confidence 99999999999999999887776654321 13699999999888776666666678999876543322 11110
Q ss_pred -HHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCc
Q 047673 210 -KIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLGR 288 (437)
Q Consensus 210 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 288 (437)
+..+.+.+++......................+...+.... .-.+.... .......++..+++.++.|+++||+||
T Consensus 239 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~--~g~s~~~~-~~~~~~~g~~~~i~~~~~g~l~Dr~gr 315 (438)
T PRK09952 239 IPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQN--LGLPRELF-LNIGLLVGGLSCLTIPCFAWLADRFGR 315 (438)
T ss_pred CCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 01111111110000000000000000000000110000000 00122222 334445567778888999999999999
Q ss_pred hhHHHHhHHHHHHHHHHHHHHH-H--HH-HHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHH-HHHHH
Q 047673 289 KVLFLLGGIQILVSQVMIGSVM-A--TQ-LVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGL-LFTSL 362 (437)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~-~--~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~-~~~~~ 362 (437)
|+.+..+.++..++...+.... . .. .........+++. ...+..+.+.+|.+|++.|+++.|+.+..+. +++.+
T Consensus 316 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~ 395 (438)
T PRK09952 316 RRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGF 395 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHH
Confidence 9988877666555443332211 1 11 1111222222222 2234456677899999999999999777655 78899
Q ss_pred HHHHHHHHHHhcc--cchhhHHHHHHHHHHHHhhhccccC
Q 047673 363 VAQTVLAMLYHFK--AGVFFFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 363 ~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (437)
+|.+.+.+.+..+ +.....+.+++.+.+.+..+..+++
T Consensus 396 ~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 396 TPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 9999999988543 4444444444455555555555543
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-30 Score=239.13 Aligned_cols=353 Identities=12% Similarity=0.087 Sum_probs=234.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHh
Q 047673 3 VFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFA 82 (437)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 82 (437)
+++|...+.++++.+....+.....++ .|.+.+++ |+++.+.|++.+.+.+++.+++++.
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~l~~~~------------------~~s~~~~g~~~~~~~~~~~~~~~~~ 64 (390)
T PRK03545 5 KVAWLRVVTLALAAFIFNTTEFVPVGL--LSDIAQSF------------------HMQTAQVGLMLTIYAWVVALMSLPL 64 (390)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHcc--hHHHHhHc------------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456766777777776654444444333 36777776 8999999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHH
Q 047673 83 STVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVAT 149 (437)
Q Consensus 83 g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~ 149 (437)
|+++||+|||+++..+.++..++++++++++|++.++++| ...+++.|++ +++|+++++++..+.++
T Consensus 65 g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~ 144 (390)
T PRK03545 65 MLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTAL 144 (390)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 3456789999 99999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHh-hccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHH-H
Q 047673 150 GILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIG-LLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELD-D 227 (437)
Q Consensus 150 G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~-~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 227 (437)
|..++|.+++.+.+. .|||+.|++.++..++..+. ...+||.|+ + + +++. +..++..+++....... .
T Consensus 145 g~~ig~~l~~~l~~~---~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~----~-~-~~~~-~~~~~~~~~~~~~~~~~~~ 214 (390)
T PRK03545 145 AMVLGLPLGRVIGQY---LGWRTTFLAIGGGALITLLLLIKLLPLLPS----E-H-SGSL-KSLPLLFRRPALVSLYLLT 214 (390)
T ss_pred HHHHHhhHHHHHHHH---hcHHHHHHHHHHHHHHHHHHHHHhCCCCCC----C-C-cchH-HHHHHHHhCcHHHHHHHHH
Confidence 999999999887754 38999999988766655433 445676542 1 1 1111 11222222221111000 0
Q ss_pred HHHHhhhhhccccch-hhhhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHH
Q 047673 228 LIRQSSVSKNINHPF-KKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMI 306 (437)
Q Consensus 228 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 306 (437)
......... ...+ ...+... .-.+.... +.......++.++++++.+++.||+++|+.. .+..+..++...+
T Consensus 215 ~~~~~~~~~--~~~~~~~~l~~~---~g~s~~~~-~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l 287 (390)
T PRK03545 215 VVVVTAHFT--AYSYIEPFVQQV---AGLSENFA-TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLL 287 (390)
T ss_pred HHHHHHHHH--HHHHHHHHHHHh---cCCCccHH-HHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHH
Confidence 000000000 0001 0111110 11244555 7777888899999999999999999987654 3444444443333
Q ss_pred H-HHHHHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH
Q 047673 307 G-SVMATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGG 384 (437)
Q Consensus 307 ~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 384 (437)
. ...+......+....+.+. ...+.......+..| +.|++++|+.+...++|..+++.+.|.+.++.++...+...+
T Consensus 288 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~ 366 (390)
T PRK03545 288 LPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGA 366 (390)
T ss_pred HHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHH
Confidence 2 2222222222222222222 223333445556666 578999999999999999999999999999998765555544
Q ss_pred HHHHHHHHh
Q 047673 385 WLIAMTTFV 393 (437)
Q Consensus 385 ~~~~~~~~~ 393 (437)
...+.+.+.
T Consensus 367 ~~~~~~~~~ 375 (390)
T PRK03545 367 ALALAALVW 375 (390)
T ss_pred HHHHHHHHH
Confidence 444444443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=244.56 Aligned_cols=355 Identities=12% Similarity=0.024 Sum_probs=234.8
Q ss_pred chHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHH
Q 047673 2 TVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLF 81 (437)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~ 81 (437)
+++.|.....++++.+++++|...++... |.+.+++ |++..+.|++.+++.+++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~l~~~~------------------~~s~~~~g~~~s~~~~~~~~~~~~ 62 (412)
T TIGR02332 3 KKLFRRLIIFLFILFIFSFLDRINIGFAG--LTMGKDL------------------GLSATMFGLAATLFYAAYVICGIP 62 (412)
T ss_pred eeehhHHHHHHHHHHHHHHhhhhhHHHHH--HhhHhhc------------------CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 34568888899999999999999998765 6666666 899999999999999999999999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHH
Q 047673 82 ASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVA 148 (437)
Q Consensus 82 ~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~ 148 (437)
.|+++||+|||+++..+.++++++++++++++|++.+++.| ....++.|++ +++|++++++++.+..
T Consensus 63 ~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ 142 (412)
T TIGR02332 63 SNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMP 142 (412)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 3446689999 8899999999999999
Q ss_pred HHHHHHHHHHhhhhcc---CCCcchHHHHHhhHHHHHHH-HHhhccCCCChhHHHhhCCCHHHHHHHHHHHhCCc-c---
Q 047673 149 TGILSANLLNYGTQKI---KGGWGWRISLAMAVAPASIL-TIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTA-D--- 220 (437)
Q Consensus 149 ~G~~~~~~~~~~l~~~---~~~~~wr~~f~~~~i~~~~~-~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~-~--- 220 (437)
+|.++++.+++.+... .+..|||+.|++.+++.++. .+.++++||+|+.. +.-..++.+...+..+++. +
T Consensus 143 ~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~~~~ 220 (412)
T TIGR02332 143 VTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLTLEQ 220 (412)
T ss_pred HHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhccccccc
Confidence 9999999998877632 12358999999987776654 44556789988421 0000111111111110000 0
Q ss_pred H-----------HHHHHHHHHHhh--------hhhccccchhhhhccccccc---ccccchHHHHHHHHHHHHHHHHhhh
Q 047673 221 V-----------QAELDDLIRQSS--------VSKNINHPFKKIIDRKYRPQ---LLSESTSLLMSALVTGGIGTVSTIL 278 (437)
Q Consensus 221 ~-----------~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (437)
. ............ ........+.. +-+.+... -.+..+. +.......++.+++.++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~l~~~~~~~s~~~~-~~~~~~~~l~~~~g~l~ 298 (412)
T TIGR02332 221 PEGAFAHAAMPQRSMLREIFTPAIMLYTLAYFCLTNTLSAINI-WTPQILQSFNQGSSNIMI-GLLAAIPQFCTIFGMIW 298 (412)
T ss_pred cccccccccccHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCcHHHh-HHHhhHHHHHHHHHHHH
Confidence 0 000000000000 00000000000 00011111 0123444 66778888999999999
Q ss_pred HHHHhhhcCchhH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHH
Q 047673 279 PMILADKLGRKVL-FLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVG 356 (437)
Q Consensus 279 ~g~l~d~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 356 (437)
.|+++||+++|+. .....+...++..+.............+...+++. ...+..+....|.+|++.|++++|+.+..+
T Consensus 299 ~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~ 378 (412)
T TIGR02332 299 WSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATG 378 (412)
T ss_pred HHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhh
Confidence 9999999997764 33333333333222211111111111111112221 122333445567899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcc-cchhh
Q 047673 357 LLFTSLVAQTVLAMLYHFK-AGVFF 380 (437)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~g-~~~~~ 380 (437)
+++++++|.+.+.+.+..| |...+
T Consensus 379 ~~g~~~~p~~~g~i~~~~g~~~~~~ 403 (412)
T TIGR02332 379 NIGSALSPFLIGILKDATGSFNSGL 403 (412)
T ss_pred hhhhhhhhhhcccccccCCCCchhH
Confidence 9999999999999999876 55433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=228.09 Aligned_cols=363 Identities=11% Similarity=-0.016 Sum_probs=232.6
Q ss_pred HHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 047673 6 VLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTV 85 (437)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l 85 (437)
|.....++++.+..-.. ...+++ +|.++++| |+|..+.|++.+.+.+++.+++++.|++
T Consensus 9 ~~~~~~~~~~~~~~~~~-~~~~~~--lp~i~~~~------------------~~s~~~~g~~~s~~~~~~~l~~~~~g~l 67 (393)
T PRK09705 9 FMLLVLVLIGLNMRPLL-TSVGPL--LPQLRQAS------------------GMSFSVAALLTALPVVTMGGLALAGSWL 67 (393)
T ss_pred HHHHHHHHHHHHcchhh-hccchh--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 44445555555554443 333433 37788777 8999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcccccccchHHHHHHHHHHHHHH
Q 047673 86 TRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGTPKHIGGFNIGFQVCVATGILS 153 (437)
Q Consensus 86 ~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~~~~r~~~~~~~~~~~~~G~~~ 153 (437)
+||+|||+++..+..+++++.+++++++|++.++++| ....++.++++++|+++++.+..+..+|..+
T Consensus 68 ~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~ 147 (393)
T PRK09705 68 HQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGL 147 (393)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 4456667766888999999999999999999
Q ss_pred HHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccC-CCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHHHHHHHh
Q 047673 154 ANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFL-PETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDDLIRQS 232 (437)
Q Consensus 154 ~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l-~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (437)
++.+++.+.+.. .+||+.+.+.++..++.++.++.. ++.|+. +++ ++ .+..+.++ ++........... .
T Consensus 148 g~~~~~~l~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~-~~~~~~l~-~~~~~~l~~~~~~-~ 217 (393)
T PRK09705 148 GAAITPWLVQHS--ETWYQTLAWWALPAVVALFAWWWQSAREVAS---SHK--TT-TTPVRVVF-TPRAWTLGVYFGL-I 217 (393)
T ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---ccC--CC-cCCccccc-CHhHHHHHHHHHH-H
Confidence 999988876543 279988776555544433333222 222210 000 00 00000001 1100000000000 0
Q ss_pred hhhhccccchhhhhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHH
Q 047673 233 SVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMAT 312 (437)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (437)
.........+...+ ....-.+..+. +......+++.++++++.+++.||++||+.+..+..+..++..++......
T Consensus 218 ~~~~~~~~~~lp~~---l~~~g~s~~~a-g~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~ 293 (393)
T PRK09705 218 NGGYASLIAWLPAF---YIEIGASAQYS-GSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQ 293 (393)
T ss_pred HHHHHHHHHHHHHH---HHHcCCChhhh-hHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccch
Confidence 00000000111111 11112255566 788889999999999999999999999998888877776666554432222
Q ss_pred H-HHHHHHHHHHhhhcccccccccccccC-ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHHH-HHHHH
Q 047673 313 Q-LVLICVYNAGFTFLWWPLGWLVPSEIF-PLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFK-AGVFFFFG-GWLIA 388 (437)
Q Consensus 313 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~-~~~~~ 388 (437)
. .....+...+.+. ..+.......+.. |++.+++.+|+.+..+++++.++|.+.|.+.|..| +...+.+. ..+.+
T Consensus 294 ~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~ 372 (393)
T PRK09705 294 LPVLWAMVCGLGLGG-AFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVG 372 (393)
T ss_pred HHHHHHHHHHHhccc-hHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 1 2222222222222 2233333334555 56789999999999999999999999999999887 44444443 33333
Q ss_pred HHHHhhhccccCCCCC
Q 047673 389 MTTFVHFFLPETKNVP 404 (437)
Q Consensus 389 ~~~~~~~~~~~~~~~~ 404 (437)
.......+.||++++.
T Consensus 373 ~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 373 LMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHhccccccch
Confidence 3344455566665543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-29 Score=235.59 Aligned_cols=373 Identities=14% Similarity=0.080 Sum_probs=235.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHh
Q 047673 3 VFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFA 82 (437)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 82 (437)
+.++.+.....++.+...++...++... |.+.+++ |++..+.|++.+.+.+++.+++++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~ 78 (434)
T PRK11663 19 YWRRHILITMYLGYALFYFTRKSFNAAM--PEMLADL------------------GLSRSDIGLLATLFYITYGVSKFVS 78 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhh--HHHHHhc------------------CCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455666677788888888877766544 7777776 8999999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHH
Q 047673 83 STVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVAT 149 (437)
Q Consensus 83 g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~ 149 (437)
|+++||+|||+++.++.++.+++.+++++++|++.+++.| ....++.|++ +++|++++++++.+..+
T Consensus 79 G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~ 158 (434)
T PRK11663 79 GIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNV 158 (434)
T ss_pred hHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988877 4456789999 88999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHH-HHhhccCCCChhHHHhhCCC-HH-HHHHHHHHHhC-CccHHHHH
Q 047673 150 GILSANLLNYGTQKIKGGWGWRISLAMAVAPASIL-TIGLLFLPETPSSIIQRNND-YQ-KAEKIMQIVRG-TADVQAEL 225 (437)
Q Consensus 150 G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~-~~~~~~l~esp~~~~~~~~~-~~-~~~~~~~~~~~-~~~~~~~~ 225 (437)
|.++++.+++.+.+. +|||+.|++.++..++. ++..+++||+|++...+..+ .+ +.++..++..+ ..+.++..
T Consensus 159 g~~~~~~~~~~l~~~---~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (434)
T PRK11663 159 GGALIPLVVGAIALH---YGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEIL 235 (434)
T ss_pred HHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhH
Confidence 999999998887754 48999999877665543 34455678877532100000 00 00000000000 00000000
Q ss_pred HH-HHHHhh---------hhhccccchhhhhccccc-c-cccccchHHHHHHHHHHHHHHHHhhhHHHHhhhc--CchhH
Q 047673 226 DD-LIRQSS---------VSKNINHPFKKIIDRKYR-P-QLLSESTSLLMSALVTGGIGTVSTILPMILADKL--GRKVL 291 (437)
Q Consensus 226 ~~-~~~~~~---------~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~ 291 (437)
.. ...... ........... +-+.+. . .-.+..+. +.......++.++++++.|+++||+ ++|+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~l~~~~g~s~~~a-~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~ 313 (434)
T PRK11663 236 TKYVLLNPYIWLLSFSYVLVYVVRAAIND-WGNLYMSETLGVDLVTA-NSAVSMFELGGFIGALVAGWGSDKLFNGNRGP 313 (434)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHHhhhHHHhccCCccH
Confidence 00 000000 00000000000 001111 0 12245556 6778888899999999999999998 33332
Q ss_pred H-HHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 047673 292 F-LLGGIQILVSQVMIGSVM--ATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTV 367 (437)
Q Consensus 292 ~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 367 (437)
. ....+...+....+.... .........+..++.. +..........|.+|++.|+++.|+.+...++|+.++|+++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~ 393 (434)
T PRK11663 314 MNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPL 393 (434)
T ss_pred HHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccH
Confidence 2 222212121111111111 1111112222222221 11222234567999999999999999999999999999999
Q ss_pred HHHHHhcccchhhHHHHHH-HHHHHHhhhccccC
Q 047673 368 LAMLYHFKAGVFFFFGGWL-IAMTTFVHFFLPET 400 (437)
Q Consensus 368 ~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~ 400 (437)
|.+.|..++...+...+++ ++.++......+++
T Consensus 394 g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 427 (434)
T PRK11663 394 AKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQ 427 (434)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999988866544444333 44444443334333
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=231.93 Aligned_cols=345 Identities=14% Similarity=0.196 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHH-HHHH-----HHHHHH
Q 047673 4 FVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAF-TSSL-----YIAGLI 77 (437)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~-~s~~-----~l~~~i 77 (437)
.++.....++++.+++++|...++... |.+.+++ +.++.+.+.+ .+.. .++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~i~~~~------------------~~~~~~~~~~~~~~~~~~~~~l~~~i 71 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLFGFYA--TAIAKTF------------------FPAGNEFASLMLTFAVFGAGFLMRPL 71 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCCCCchHHHHHHHHHHHHHHHHhhh
Confidence 456678888999999999999999765 7888887 5555554433 2222 333457
Q ss_pred HHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccce--------eeeee------------cchhhhhhcc-cccc
Q 047673 78 ASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYM--------LILGL------------NAPISLRNGT-PKHI 136 (437)
Q Consensus 78 ~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~--------l~~~r------------~~~~~i~~~~-~~~r 136 (437)
++++.|+++||+|||+.++.+.+++.+++++++++++++. ++++| ....+++|++ +++|
T Consensus 72 g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~r 151 (434)
T PRK15075 72 GAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRK 151 (434)
T ss_pred HHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccc
Confidence 8999999999999999999999999999999999999874 57788 3557899999 9999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhccC-----CCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHHHH
Q 047673 137 GGFNIGFQVCVATGILSANLLNYGTQKIK-----GGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKI 211 (437)
Q Consensus 137 ~~~~~~~~~~~~~G~~~~~~~~~~l~~~~-----~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~ 211 (437)
++++++...+..+|..+++.++..+.... +++|||++|++..+...+..+.....||++++..++++ . +.++.
T Consensus 152 g~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-~-~~~~~ 229 (434)
T PRK15075 152 GFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR-P-SMREI 229 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc-c-ccccH
Confidence 99999999988888888888777654211 24689999998665544444444456676543221111 1 00111
Q ss_pred HHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhccccccc--ccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCch
Q 047673 212 MQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQ--LLSESTSLLMSALVTGGIGTVSTILPMILADKLGRK 289 (437)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 289 (437)
.+...++.. .......... ... ........+.+.+... -.+..+. ........++.+++.++.|+++||+|||
T Consensus 230 ~~~~~~~~~--~~~~~~~~~~-~~~-~~~~~~~~~~p~~l~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~g~l~Dr~g~r 304 (434)
T PRK15075 230 FRSLAANWR--IVLAGMLMVA-MTT-VSFYLITVYTPTFGKTVLHLSAADS-LLVTLCVGVSNFIWLPIGGALSDRIGRR 304 (434)
T ss_pred HHHHHHhHH--HHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 111100000 0000000000 000 0000001111111111 1244455 6677778888999999999999999999
Q ss_pred hHHHHhHHHHHHHHHH-HHHH-HHHH--HHHH--HHHHHHhhhcccccccccccccCChhhhhhHHHHHHHHHHH-HHHH
Q 047673 290 VLFLLGGIQILVSQVM-IGSV-MATQ--LVLI--CVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLL-FTSL 362 (437)
Q Consensus 290 ~~~~~~~~~~~~~~~~-~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-~~~~ 362 (437)
+.+..+..+..+.... +... .... .... .+...+++ ...+....+..|.+|++.|+++.++.+.++.. ++.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~ 383 (434)
T PRK15075 305 PVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYG-SYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGF 383 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH-HHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhh
Confidence 9877665444332211 1111 1111 1111 11222222 22333445678999999999999997766664 5888
Q ss_pred HHHHHHHHHHhccc
Q 047673 363 VAQTVLAMLYHFKA 376 (437)
Q Consensus 363 ~~~~~~~~~~~~g~ 376 (437)
+|.+.+.+.+..++
T Consensus 384 ~p~~~g~i~~~~g~ 397 (434)
T PRK15075 384 TPAISTWLIHVTGD 397 (434)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999998774
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=238.99 Aligned_cols=346 Identities=11% Similarity=-0.035 Sum_probs=222.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHh
Q 047673 3 VFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFA 82 (437)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 82 (437)
+..+.+...+.++.+....|...++... |.+.++| |++..+.|++.+++.+++.+++++.
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~--~~i~~~~------------------~~s~~~~g~~~s~~~~~~~~~~~~~ 84 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQ--NDMISTY------------------GLSTTELGMIGLGFSITYGVGKTLV 84 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhh--HHHHHhc------------------CCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456667778888888888999988654 7888877 8899999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHhh-----ccccceeeeee------------cchhhhhhcc-cccccchHHHHH
Q 047673 83 STVTRAFGRKASILVGGTTFLTSSAIGGA-----ALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQ 144 (437)
Q Consensus 83 g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~ 144 (437)
|+++||+|||+++..+.++++++.++.++ ++|++.+++.| ....+++|++ +++||++++++.
T Consensus 85 G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~ 164 (467)
T PRK09556 85 GYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWN 164 (467)
T ss_pred hhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeee
Confidence 99999999999999888888877766654 68999999999 4457789999 999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHH-HHhhccCCCChhHHHhhCCCHHHH-HHH---HHHHh-CC
Q 047673 145 VCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASIL-TIGLLFLPETPSSIIQRNNDYQKA-EKI---MQIVR-GT 218 (437)
Q Consensus 145 ~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~-~~~~~~l~esp~~~~~~~~~~~~~-~~~---~~~~~-~~ 218 (437)
.+.++|.++++.+...+.......+||..|.+.+++.++. ++.+++.+++|+..... + .++. .+. .++.. ++
T Consensus 165 ~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 242 (467)
T PRK09556 165 ISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-K-AEEIFGEPISEEDKETEST 242 (467)
T ss_pred cccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-C-hhhcccCccchhhhccccc
Confidence 9999999999988766554321126999888877665554 33445556666421000 0 0000 000 00000 00
Q ss_pred c-cHHHHHHH-HHHHhhhh---------hccccchhhhhccccccc--ccccchHHHHHHHHHHHHHHHHhhhHHHHhhh
Q 047673 219 A-DVQAELDD-LIRQSSVS---------KNINHPFKKIIDRKYRPQ--LLSESTSLLMSALVTGGIGTVSTILPMILADK 285 (437)
Q Consensus 219 ~-~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 285 (437)
+ ...+.... ........ ...... ...+.+.+... -.+..+. +.......++.+++.++.|+++||
T Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~p~yl~~~~g~s~~~a-~~~~~~~~~~~~ig~~~~G~lsDr 320 (467)
T PRK09556 243 DMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIG-IDNWSPVYAFQELGFSKEDA-INTFTLFEIGALVGSLLWGWLSDL 320 (467)
T ss_pred cCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000000 00000000 000000 00111111111 1245556 677777888999999999999999
Q ss_pred cCchhHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHH-HHH
Q 047673 286 LGRKVLFLLGGIQILVSQVMIGSVM--ATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLL-FTS 361 (437)
Q Consensus 286 ~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-~~~ 361 (437)
++||+.+........++...+.... +........+..++.. +..........|.+|++.|+++.|+.+..+++ ++.
T Consensus 321 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~ 400 (467)
T PRK09556 321 ANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDS 400 (467)
T ss_pred HCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHH
Confidence 9998876654443333322222211 1112222333333221 21112224556999999999999999999997 669
Q ss_pred HHHHHHHHHHH
Q 047673 362 LVAQTVLAMLY 372 (437)
Q Consensus 362 ~~~~~~~~~~~ 372 (437)
++|.+.|.+.|
T Consensus 401 ~~~~~~G~i~~ 411 (467)
T PRK09556 401 FAKVGLGMIAD 411 (467)
T ss_pred HHhhhHHHHhc
Confidence 99999999999
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=229.88 Aligned_cols=323 Identities=14% Similarity=0.020 Sum_probs=213.5
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cch
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAP 125 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~ 125 (437)
|++..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++| ...
T Consensus 34 ~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 113 (377)
T TIGR00890 34 GVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIAL 113 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999 233
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHh-hccCCCChhHHHhhCCC
Q 047673 126 ISLRNGTPKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIG-LLFLPETPSSIIQRNND 204 (437)
Q Consensus 126 ~~i~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~-~~~l~esp~~~~~~~~~ 204 (437)
..+.++++++|+++.++...+.++|..+++.+...+.+. .+||+.|++.++..++..+. .++++|+|+...+++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (377)
T TIGR00890 114 NTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINL---EGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIE 190 (377)
T ss_pred HHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCcc
Confidence 445566677899999999999999988766555554432 48999999988776665444 34455443211111110
Q ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhh
Q 047673 205 YQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILAD 284 (437)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 284 (437)
.++.++..++..+++............. .. .......+.......-.+..+. +.......+..++++++.+++.|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d 265 (377)
T TIGR00890 191 VSVKDYTVWEMLRTPQFWVLYLSFFLNA-VS---GLLLIGLYKPYGQSLGLSDGFL-VLAVSISSIFNGGGRPFLGALSD 265 (377)
T ss_pred cchhhhhHHHHHcCccHHHHHHHHHHHh-HH---HHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111212111110000000000 00 0000000000000011234445 67788888999999999999999
Q ss_pred hcCchhHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHHHHH
Q 047673 285 KLGRKVLFLLGGIQILVSQVMIGSVMATQ--LVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTS 361 (437)
Q Consensus 285 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~ 361 (437)
|++||+.+..+..+.+++.+.+....... .........+... ...+....+..|.+|+++|+++.|+.+....+++.
T Consensus 266 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~ 345 (377)
T TIGR00890 266 KIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGI 345 (377)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHH
Confidence 99999998888888777776655443221 1111122222222 22233445678999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchhhHHHHHHHH
Q 047673 362 LVAQTVLAMLYHFKAGVFFFFGGWLIA 388 (437)
Q Consensus 362 ~~~~~~~~~~~~~g~~~~~~~~~~~~~ 388 (437)
++|.+.+.+.+..++...+...+++.+
T Consensus 346 ~~~~~~g~l~~~~g~~~~f~~~~~~~~ 372 (377)
T TIGR00890 346 FGGLIASHALTEIGFEYTFIVTGAFAL 372 (377)
T ss_pred HHHHHHHHHHhhhchhhHHHHHHHHHH
Confidence 999999999998887655544443333
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=229.93 Aligned_cols=350 Identities=17% Similarity=0.160 Sum_probs=254.9
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------c
Q 047673 56 YCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------N 123 (437)
Q Consensus 56 ~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~ 123 (437)
.++.+.....+..+++++|.++|++++|+++||+|||++++.++++..++.++.++++|++.+++.| +
T Consensus 112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~ 191 (521)
T KOG0255|consen 112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTV 191 (521)
T ss_pred eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHH
Confidence 4466788899999999999999999999999999999999999999999999999999999999999 6
Q ss_pred chhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhC
Q 047673 124 APISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRN 202 (437)
Q Consensus 124 ~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~ 202 (437)
...++.|+. +++|+.+..+ ......|..+++..++.+.. +||+.+++..++.++.++.+++.||+|||+..++
T Consensus 192 ~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g 265 (521)
T KOG0255|consen 192 GFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKG 265 (521)
T ss_pred hHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcC
Confidence 777889999 9999999999 65556666666666665553 7999999999998888777777789999999999
Q ss_pred CCHHHHHHHHHHHhCCc----cHHHHHHHH---HHHhhhhhccccchhhhhccc-cccccc-------------------
Q 047673 203 NDYQKAEKIMQIVRGTA----DVQAELDDL---IRQSSVSKNINHPFKKIIDRK-YRPQLL------------------- 255 (437)
Q Consensus 203 ~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------------- 255 (437)
+ .+++.+.+++..+.+ ......... .........+...+.++++.+ .+....
T Consensus 266 ~-~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~ 344 (521)
T KOG0255|consen 266 R-IDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLN 344 (521)
T ss_pred c-hHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhh
Confidence 9 888888888875432 111111111 111111111224456665543 222221
Q ss_pred --ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhcc
Q 047673 256 --SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ-----LVLICVYNAGFTFLW 328 (437)
Q Consensus 256 --~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 328 (437)
+............+.....+....+...|++|||.....+..+..++.+...+..... .....+...+.+.++
T Consensus 345 ~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (521)
T KOG0255|consen 345 VSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAF 424 (521)
T ss_pred hhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH
Confidence 2222224555556667888888889999999999999999999999988888776432 222222222233334
Q ss_pred cccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhccccCCCCCHHHH
Q 047673 329 WPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQM 408 (437)
Q Consensus 329 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (437)
... +.+.+|++|+..|..+.+.......+++.++|.+............+.+++....+.+.+..+++||++++...+.
T Consensus 425 ~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t 503 (521)
T KOG0255|consen 425 NLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGT 503 (521)
T ss_pred HHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchh
Confidence 444 7788999999999999999999999999988887654444222222223455666667777788999999887554
Q ss_pred HHHHc
Q 047673 409 DKVWR 413 (437)
Q Consensus 409 ~~~~~ 413 (437)
.++.+
T Consensus 504 ~~~~~ 508 (521)
T KOG0255|consen 504 LLDAE 508 (521)
T ss_pred HHHHH
Confidence 44333
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=224.46 Aligned_cols=354 Identities=13% Similarity=0.068 Sum_probs=229.8
Q ss_pred HHHHHHHHHHHHhhcccccccccCchHH-HHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhh
Q 047673 8 SCIVAASGGLIFGYDIGISGGVTSMEPF-LKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVT 86 (437)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~ 86 (437)
-....++..+...++.++..+.. |.+ .+++ |.|+.+.|++.+++.+++.+++++.|+++
T Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~l--~~~i~~~~------------------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~ 75 (399)
T PRK05122 16 RIVSIVMFTFISYLTIGLPLAVL--PGYVHDQL------------------GFSAFLAGLVISLQYLATLLSRPHAGRYA 75 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhc------------------CccHHHHHHHHHHHHHHHHHhchhhHhHH
Confidence 34445566677777777766554 443 3444 88999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHhhc---c-----ccceeeeee------------cchhhhhhcc-cccccchHHHHHH
Q 047673 87 RAFGRKASILVGGTTFLTSSAIGGAA---L-----DIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQV 145 (437)
Q Consensus 87 dr~Grr~~~~~~~~~~~~~~~~~~~a---~-----~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~ 145 (437)
||+|||+++..+.++++++.+.+.++ + +++.+++.| ....++.|+. +++|++++++.+.
T Consensus 76 Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 155 (399)
T PRK05122 76 DTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGI 155 (399)
T ss_pred hccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhh
Confidence 99999999999999888877766543 2 456778888 3445678999 9999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHH
Q 047673 146 CVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAEL 225 (437)
Q Consensus 146 ~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (437)
+..+|.++++.+++.+.+. .|||+.+++..+..++..+.....|++++. +++ .++.++..++... ...
T Consensus 156 ~~~~g~~~g~~l~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~-----~~~ 223 (399)
T PRK05122 156 ATYGALAIGAPLGVLLYHW---GGLAGLGLLIMLLALLGLLLARPRPAVPPV---KGE-RLPFRRVLGRVWP-----YGM 223 (399)
T ss_pred hhhHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHhcCCCCCCC---Ccc-chhHHHHHHHHHH-----HHH
Confidence 9999999999999888754 389999888776655544444444443311 111 1111111111000 000
Q ss_pred HHHHHHhhhhhccccchhhh-hcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHH
Q 047673 226 DDLIRQSSVSKNINHPFKKI-IDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQV 304 (437)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 304 (437)
......... .....+... +... +.... +.......++.+++.++.+++.||+++|+.+..+..+.+++..
T Consensus 224 ~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~ 294 (399)
T PRK05122 224 GLALASIGF--GTIATFITLYYAAR------GWDGA-ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLL 294 (399)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHc------ccccc-hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 000000000 000011111 1110 11233 4555667788889999999999999999998888887777776
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 047673 305 MIGSVMATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFG 383 (437)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 383 (437)
.+....+...........+++. ...+.......|..|++.|+++.|+.+....++..+++++.|.+.+..++...+...
T Consensus 295 ~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 374 (399)
T PRK05122 295 LLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAA 374 (399)
T ss_pred HHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 6655443332222222222222 223333344568889999999999999999999999999999999988866555444
Q ss_pred HHHHHHHHHhhhccccCCC
Q 047673 384 GWLIAMTTFVHFFLPETKN 402 (437)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~ 402 (437)
+.+.+.+.+...+.+++++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~ 393 (399)
T PRK05122 375 ALAALLGLALTWLLYRRAP 393 (399)
T ss_pred HHHHHHHHHHHHHhccccc
Confidence 4444444444444444433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-28 Score=228.49 Aligned_cols=316 Identities=13% Similarity=0.034 Sum_probs=209.9
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cch
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAP 125 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~ 125 (437)
|+++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++| ...
T Consensus 25 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 104 (399)
T TIGR00893 25 GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGII 104 (399)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999 456
Q ss_pred hhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHh-hccCCCChhHHHhhCC
Q 047673 126 ISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIG-LLFLPETPSSIIQRNN 203 (437)
Q Consensus 126 ~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~-~~~l~esp~~~~~~~~ 203 (437)
.++.|++ +++|++++++.+.+..+|.++++.+++.+.+.. +||+.|++.++..++..+. .+..||+|+... ..+
T Consensus 105 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 180 (399)
T TIGR00893 105 LIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF---SWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAK-WLT 180 (399)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC---CchHHHHHHHHHHHHHHHHhhheecCCCCccc-cCC
Confidence 7889999 899999999999999999999999998876543 7999999887766654444 445666553110 001
Q ss_pred CHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhccccc-------------------------cc--ccc
Q 047673 204 DYQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYR-------------------------PQ--LLS 256 (437)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~--~~~ 256 (437)
+++.....+....+... ....+......++.++++.. .. -.+
T Consensus 181 -~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (399)
T TIGR00893 181 -EEEKYIVVGGLLAEQQG----------KGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLS 249 (399)
T ss_pred -HHHHhhcchhhcccccc----------ccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccc
Confidence 11111000000000000 00000000011111111100 00 013
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHH-HHhHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHhhhcc
Q 047673 257 ESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLF-LLGGIQILVS---QVMIGSVM----ATQLVLICVYNAGFTFLW 328 (437)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~-~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~ 328 (437)
..+. +.......+..+++.++.+++.||++||+.. ........++ ........ ............+++.+.
T Consensus 250 ~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (399)
T TIGR00893 250 ILEA-GFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGA 328 (399)
T ss_pred HHHh-hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhh
Confidence 4445 6777888889999999999999999998611 1111111111 11111111 111222222222333335
Q ss_pred cccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHH
Q 047673 329 WPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFK-AGVFFFFGGWLIAM 389 (437)
Q Consensus 329 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~ 389 (437)
.+....+..|.+|++.|+++.|+.+.+.++++.++|.+.+.+.+..+ +...+.+.++..+.
T Consensus 329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~ 390 (399)
T TIGR00893 329 GAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALI 390 (399)
T ss_pred hhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHH
Confidence 66677788999999999999999999999999999999999999887 65444444433333
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-27 Score=215.29 Aligned_cols=320 Identities=11% Similarity=0.030 Sum_probs=193.1
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee-----------cchh
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL-----------NAPI 126 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r-----------~~~~ 126 (437)
|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+....++|++.++++| ....
T Consensus 22 ~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~~~~~~~ 101 (368)
T TIGR00903 22 DVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPFLLNAFA 101 (368)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHHHHHHHH
Confidence 89999999999999999999999999999999999987766555555443333447999999999 2345
Q ss_pred hhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHH-HHHhhccCCCChhHHHhhCCC
Q 047673 127 SLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASI-LTIGLLFLPETPSSIIQRNND 204 (437)
Q Consensus 127 ~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~-~~~~~~~l~esp~~~~~~~~~ 204 (437)
.++|++ +++|++++++.+.+..+|.+++++++..+.+. +|||+.|++.++++++ .++.++++||+|++..++.+
T Consensus 102 ~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~---~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~- 177 (368)
T TIGR00903 102 PAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA---GGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFG- 177 (368)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcc-
Confidence 568999 99999999999999999999999999998754 4899999996665555 44456678998864311111
Q ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhh-hhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHh
Q 047673 205 YQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKK-IIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILA 283 (437)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 283 (437)
.++..+..+++-+++............ .........|.. +++.. -.+.. . +.......+.+.++ .++++
T Consensus 178 ~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~wlp~~L~~~----g~s~~-~-~~~~~l~~~~g~~g---~~~~~ 247 (368)
T TIGR00903 178 FKDAVKEFGALAGRKDLWIIGAILGFG-VALFDNLAIWLEAALRPA----GLEDI-A-GDAVALAILAGLIG---VAVIP 247 (368)
T ss_pred hHHHHHHHHHHHcChhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHC----CCChH-H-HHHHHHHHHHHHHH---HHHhh
Confidence 111111122221221111000000000 000000011111 11111 11222 3 34444444444444 57788
Q ss_pred hhcCch---hHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccccccccccccCChhhhhhHHHHHHHHHHH
Q 047673 284 DKLGRK---VLFL-LGGIQILVSQVMIGSVMATQLVLICVYNAGFT-FLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLL 358 (437)
Q Consensus 284 d~~g~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~ 358 (437)
||..|| +... ....+.++....+....+......++...++. ....+..+.+.+|.+|++.|+++.|+.+..+++
T Consensus 248 d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~ 327 (368)
T TIGR00903 248 DRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRA 327 (368)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHH
Confidence 887543 3322 23333333333333222221222222222222 223344567788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHh
Q 047673 359 FTSLVAQTVLAMLYHFK-AGVFFFFGGWLIAMTTFV 393 (437)
Q Consensus 359 ~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~ 393 (437)
++..+|.+.+.+.. + ...+..+++..++.++..
T Consensus 328 ~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 328 ISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred HHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 99999999987773 4 344555555555544443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=224.33 Aligned_cols=341 Identities=12% Similarity=0.009 Sum_probs=230.7
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhh-----ccccceeeeee----------
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGA-----ALDIYMLILGL---------- 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----a~~~~~l~~~r---------- 122 (437)
+.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+. .++++.+++.|
T Consensus 48 ~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 127 (417)
T PRK10489 48 TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLG 127 (417)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999999999888887777665442 56777777777
Q ss_pred --cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHH
Q 047673 123 --NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSII 199 (437)
Q Consensus 123 --~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~ 199 (437)
...+++.|+. +++|+++.++...+..+|..+|+.+++.+.+.. +|++.|++.++..++..+..+.+||+++...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 204 (417)
T PRK10489 128 VTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG---GVAWNYGLAAAGTFITLLPLLRLPALPPPPQ 204 (417)
T ss_pred HHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence 3455678889 889999999999999999999999999887543 7999998887777666666667777643211
Q ss_pred hhCCCHHHHHHHHHHHhCCccHHHHHH-HHHHHhhhhhccccchhhhhccccccc--ccccchHHHHHHHHHHHHHHHHh
Q 047673 200 QRNNDYQKAEKIMQIVRGTADVQAELD-DLIRQSSVSKNINHPFKKIIDRKYRPQ--LLSESTSLLMSALVTGGIGTVST 276 (437)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 276 (437)
++++..++..+..+...+++....... ...... . ......+ +.+... -.+.... +.......++.+++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~-p~~~~~~~g~~~~~~-g~~~~~~~~g~~ig~ 276 (417)
T PRK10489 205 PREHPLRSLLAGFRFLLASPVVGGIALLGGLLTM--A----SAVRVLY-PALADEVWQMGAAQI-GLLYAAVPLGAALGA 276 (417)
T ss_pred ccccchHHHHHHHHHHHcChHHHHHHHHHHHHHH--H----HhHHHhh-HHHHHhccCCChhHh-HHHHHHHHHHHHHHH
Confidence 111101111112222222221111100 000000 0 0000011 111111 1144455 777888889999999
Q ss_pred hhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccccccccccCChhhhhhHHHHHHHH
Q 047673 277 ILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFLW-WPLGWLVPSEIFPLEIRSAGKSITVAV 355 (437)
Q Consensus 277 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~r~~~~g~~~~~ 355 (437)
++.+++.||.++++.+..+..+.+++.+.+....+......+.+..+++.+. .+....++.|..|++.|++++|+.+..
T Consensus 277 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 356 (417)
T PRK10489 277 LTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQ 356 (417)
T ss_pred HHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 9999999998877777777777777766655444333333333333333332 334456778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccc-chhhHHHHHHHHHHHHhhhccccCCCCCHHHHH
Q 047673 356 GLLFTSLVAQTVLAMLYHFKA-GVFFFFGGWLIAMTTFVHFFLPETKNVPIEQMD 409 (437)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (437)
.+++..+++.+.|.+.+..+. ..+...+++..+.+++....+++.++++.||.+
T Consensus 357 ~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (417)
T PRK10489 357 NVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPE 411 (417)
T ss_pred HhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 999999999999999998885 455556666666666776777777766555443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-27 Score=218.79 Aligned_cols=362 Identities=10% Similarity=-0.006 Sum_probs=235.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHh
Q 047673 3 VFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFA 82 (437)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 82 (437)
..++.+.+.+.++.+..+.+....+... |++.+++ |+|..+.+++.+.+.+++.+++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~i~~~~------------------~~s~~~~g~~~s~~~~~~~i~~~~~ 62 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVTGMVM--GPIAEYF------------------NLPVSSMSNTFTFLNAGILISIFLN 62 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888899999999988888665 7888877 8899999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHH
Q 047673 83 STVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVAT 149 (437)
Q Consensus 83 g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~ 149 (437)
|++.||+|||+++..+.++.+++.++++++++++.+++.| ....++.|++ +++|+++.+..+....+
T Consensus 63 g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 142 (394)
T PRK03699 63 AWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSM 142 (394)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888 4556788999 88899999999888999
Q ss_pred HHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHHHHH
Q 047673 150 GILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDDLI 229 (437)
Q Consensus 150 G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (437)
|..++|.+.+.+.... .+||+.|.+.++..++..+..++ .+.|+. ++++ .++.++..++. ..+..........
T Consensus 143 g~~~~~~~~~~l~~~~--~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~ 215 (394)
T PRK03699 143 AGMIFPIIAAYLLARS--IEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHA-PKADKPVAKEK-WGIGVLFLAIAAL 215 (394)
T ss_pred HHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccC-ccccCcccccc-CChHHHHHHHHHH
Confidence 9999998877664322 48999999877665554443322 122210 0111 00000000000 0000000000000
Q ss_pred HHhhhhhccccchhhhhccccccc--ccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHH
Q 047673 230 RQSSVSKNINHPFKKIIDRKYRPQ--LLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIG 307 (437)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 307 (437)
... ........+. +.+... -.+..+. +.......++..+++++.++++||+++|+.+.....+..+...++.
T Consensus 216 ~~~-~~~~~~~~~~----p~~l~~~~g~s~~~~-~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~ 289 (394)
T PRK03699 216 LYI-LAQLTFISWV----PEYAQKKFGMSLEDA-GNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFV 289 (394)
T ss_pred HHH-HHHHHHHHHH----HHHHHHHcCCChHHh-hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence 000 0000000111 111111 1245556 7777888889999999999999999999988777666655554443
Q ss_pred HHHHHHHHHHHHHHHHhh-hcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Q 047673 308 SVMATQLVLICVYNAGFT-FLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWL 386 (437)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 386 (437)
...+........+..++. .+..+....+..|..| +.+++..+......++|+.++|.+.|.+.+..++...+....++
T Consensus 290 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~ 368 (394)
T PRK03699 290 NTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGL 368 (394)
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHH
Confidence 332222222222222222 2233333444456555 34577788888899999999999999999988865444333333
Q ss_pred HHHHHHhhhccc
Q 047673 387 IAMTTFVHFFLP 398 (437)
Q Consensus 387 ~~~~~~~~~~~~ 398 (437)
.+.+.......+
T Consensus 369 ~~~~~~~~~~~~ 380 (394)
T PRK03699 369 YAVVFVMCILLG 380 (394)
T ss_pred HHHHHHHHHHHH
Confidence 433333334333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=214.57 Aligned_cols=345 Identities=13% Similarity=0.044 Sum_probs=227.3
Q ss_pred HHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 047673 9 CIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRA 88 (437)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr 88 (437)
....+++.+..+......++.. |.+.+++ |++..+.|++.+.+.+++.+++++.|+++||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~------------------g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr 64 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVL--TELAHDV------------------GISIPAAGHMISYYALGVVVGAPIIALFSSR 64 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhCh--HHHHHHc------------------CCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3445556677777776666554 7888877 8899999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHH
Q 047673 89 FGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSAN 155 (437)
Q Consensus 89 ~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~ 155 (437)
+|||+++..+.++.+++.+++++++|++.+++.| ....++.|+. +++|+++++....+..+|..+++
T Consensus 65 ~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 144 (382)
T PRK10091 65 YSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGI 144 (382)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999 3345678888 88899999999999999999999
Q ss_pred HHHhhhhccCCCcchHHHHHhhHHHHHHHHH-hhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHHHHHHHhhh
Q 047673 156 LLNYGTQKIKGGWGWRISLAMAVAPASILTI-GLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDDLIRQSSV 234 (437)
Q Consensus 156 ~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~-~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (437)
.+++.+.+. .+||+.|++.++..++..+ ..+++||.++ +.+ . +.++..+..++.. ......... ..
T Consensus 145 ~l~~~l~~~---~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~----~~~-~-~~~~~~~~~~~~~-~~~~~~~~~--~~- 211 (382)
T PRK10091 145 PLGTYLSQE---FSWRYTFLLIAVFNIAVLASIYFWVPDIRD----EAK-G-GLREQFHFLRSPA-PWLIFAATM--FG- 211 (382)
T ss_pred cHHHHHhhh---ccHHHHHHHHHHHHHHHHHHHHHhCCCCCc----ccc-c-CHHHHHHHhcChH-HHHHHHHHH--HH-
Confidence 998887754 3899999998776555443 4456787642 111 1 1111112221111 100000000 00
Q ss_pred hhccccchhhhhcccccc-cccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHH-
Q 047673 235 SKNINHPFKKIIDRKYRP-QLLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMAT- 312 (437)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~- 312 (437)
......+...+...... .-.+.... +.......++.++++++.+++.||+++|+.+..+..+.+++.+.+....+.
T Consensus 212 -~~~~~~~~~~~~~~~~~~~g~s~~~~-~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 289 (382)
T PRK10091 212 -NAGVFAWFSYIKPYMMFISGFSETSM-TFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMK 289 (382)
T ss_pred -HHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 00000000111111111 11245556 788888999999999999999999999999888887777776555433222
Q ss_pred HHHHHH--HHHHHhhhcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccchhhHHHHHHHHH
Q 047673 313 QLVLIC--VYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHF-KAGVFFFFGGWLIAM 389 (437)
Q Consensus 313 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~ 389 (437)
.....+ +...+......+.......+..|++.++.+ ..+...++|..++|.+.|.+.|.. ++...+...+...++
T Consensus 290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~ 367 (382)
T PRK10091 290 TASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFA 367 (382)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHH
Confidence 222222 222222212222222333444555555544 346678899999999999999964 565555544444333
Q ss_pred H
Q 047673 390 T 390 (437)
Q Consensus 390 ~ 390 (437)
.
T Consensus 368 ~ 368 (382)
T PRK10091 368 A 368 (382)
T ss_pred H
Confidence 3
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=223.24 Aligned_cols=343 Identities=12% Similarity=-0.023 Sum_probs=237.6
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhh
Q 047673 4 FVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFAS 83 (437)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g 83 (437)
++|.++..++++.++..+|.++.+... |.+.+++ |.+..+.+|+.+.+.++..++.+++|
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~--p~i~~~l------------------~~s~~~~~~~~~~~~l~~~~~~~~~G 62 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAA--PTLSMTL------------------GASGNELLWIIDIYSLVMAGMVLPMG 62 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999664 8888888 78999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc--cccccchHHHHHHHHHH
Q 047673 84 TVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT--PKHIGGFNIGFQVCVAT 149 (437)
Q Consensus 84 ~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~--~~~r~~~~~~~~~~~~~ 149 (437)
+++||+|||+++..+.+++.++++++++++|++.++++| .....+.+.+ +++|+++++++.....+
T Consensus 63 ~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~ 142 (495)
T PRK14995 63 ALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSG 142 (495)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 1223344554 68999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHH-HhhccCCCChhHHHhhCCCHHHHHH------------HHHHHh
Q 047673 150 GILSANLLNYGTQKIKGGWGWRISLAMAVAPASILT-IGLLFLPETPSSIIQRNNDYQKAEK------------IMQIVR 216 (437)
Q Consensus 150 G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~-~~~~~l~esp~~~~~~~~~~~~~~~------------~~~~~~ 216 (437)
|..+||.+++.+.+.. +||+.|++.....++.+ +..+++||+|+.. +++ .+.... ..+...
T Consensus 143 g~~~gp~lgg~l~~~~---gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~-~d~~g~~~~~~~~~~l~~~~~~~~ 216 (495)
T PRK14995 143 GAAFGPLVGGILLEHF---YWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQP-LNLGHALMLIVAILLLVYSAKTAL 216 (495)
T ss_pred HHHHHHHHHHHhhccC---ChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCC-CChHhHHHHHHHHHHHHHHHHhcc
Confidence 9999999999998654 89999999776555544 3445677765311 111 111000 000000
Q ss_pred CCc-cHHHHHHH-------HHHHhhhhhccccch--hhhhcccccccc---------------------------cccch
Q 047673 217 GTA-DVQAELDD-------LIRQSSVSKNINHPF--KKIIDRKYRPQL---------------------------LSEST 259 (437)
Q Consensus 217 ~~~-~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------------------------~~~~~ 259 (437)
+.. ........ .......+...+.+. .++++++..... .+..+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ 296 (495)
T PRK14995 217 KGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLE 296 (495)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 000 00000000 000000000000010 122332221110 14556
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhcc-ccccccc
Q 047673 260 SLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMA---TQLVLICVYNAGFTFLW-WPLGWLV 335 (437)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~ 335 (437)
+ +.......++..++.++.|++.||+|+|+.+..+.++.+++.+.+..... ...........+++.+. .+.....
T Consensus 297 a-g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~ 375 (495)
T PRK14995 297 A-GMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSA 375 (495)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6 77888888999999999999999999999888888777777665544321 11222222223333222 2223344
Q ss_pred ccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047673 336 PSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYH 373 (437)
Q Consensus 336 ~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 373 (437)
..+..|+++++.+.++.+...++|+.+++.+.+.+.++
T Consensus 376 ~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 376 IMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999988764
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=215.06 Aligned_cols=346 Identities=13% Similarity=0.034 Sum_probs=224.9
Q ss_pred chHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHH
Q 047673 2 TVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLF 81 (437)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~ 81 (437)
++.+|....++.++.+....+.....+. +|++.+++ |+++.+.|+..+++.++..+++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~ 74 (394)
T PRK10213 15 TRPNWSAVFSVAFCVACLIIVEFLPVSL--LTPMAQDL------------------GISEGVAGQSVTVTAFVAMFASLF 74 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777766666544333322 36666666 899999999999999999999999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHH
Q 047673 82 ASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVA 148 (437)
Q Consensus 82 ~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~ 148 (437)
.|+++||+|||+.+..+.++.+++.+++++++|++.+++.| ...+++.|++ +++|+++.++...+.+
T Consensus 75 ~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~ 154 (394)
T PRK10213 75 ITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVS 154 (394)
T ss_pred HHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 5567789999 9999999999999999
Q ss_pred HHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHh-hccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHHH
Q 047673 149 TGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIG-LLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD 227 (437)
Q Consensus 149 ~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~-~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (437)
+|.+++|.+++.+.+. +|||+.|++.++..++..+. ...+||+|+. +++ .+ ++.. +..+++........
T Consensus 155 ~g~~ig~~l~~~l~~~---~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~---~~~-~~--~~~~-~~l~~~~~~~~~~~ 224 (394)
T PRK10213 155 IALVIAAPLGSFLGEL---IGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE---PSH-QK--QNTF-RLLQRPGVMAGMIA 224 (394)
T ss_pred HHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc---ccc-ch--hHHH-HHhcCHHHHHHHHH
Confidence 9999999999998765 48999999877666554433 3446776531 111 11 1111 11112111111000
Q ss_pred HHHHhhhhhccccch-hhhhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHH-HHH
Q 047673 228 LIRQSSVSKNINHPF-KKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVS-QVM 305 (437)
Q Consensus 228 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~-~~~ 305 (437)
...... .......+ ...+... .-.+.... +......+++.+++.++.+++.||.+++ .+..+..+.... .++
T Consensus 225 ~~~~~~-~~~~~~~~~~p~~~~~---~g~s~~~~-g~~~~~~~~~~iig~~~~~~l~~r~~~~-~l~~~~~~~~~~~~~l 298 (394)
T PRK10213 225 IFMSFA-GQFAFFTYIRPVYMNL---AGFGVDGL-TLVLLSFGIASFVGTSLSSFILKRSVKL-ALAGAPLVLAVSALVL 298 (394)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHh---cCCChhHH-HHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHH
Confidence 000000 00000001 0111110 11244555 7778888889999999999999996544 333333333333 333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-ccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH
Q 047673 306 IGSVMATQLVLICVYNAGFTFL-WWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGG 384 (437)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 384 (437)
.................+++.+ ..+.....+.+..| +.+++..++.....+++..+++.+.|.+.|..|+...+..++
T Consensus 299 ~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~ 377 (394)
T PRK10213 299 TLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSG 377 (394)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHH
Confidence 3332222222222222233332 23333334556677 445677777778889999999999999999888655544444
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-26 Score=213.43 Aligned_cols=356 Identities=10% Similarity=-0.004 Sum_probs=235.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHh
Q 047673 3 VFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFA 82 (437)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 82 (437)
+..++..+.+.++.+...++...+.+.. |.+.+++ |+++.+.++..+.+.+++.+++++.
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~------------------~~s~~~~~~~~~~~~~~~~~~~~~~ 68 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGM--LAVVEDF------------------NAGAEWVPTSMTAYLAGGMFLQWLL 68 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcch--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888777654 7788887 8899999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHH
Q 047673 83 STVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVAT 149 (437)
Q Consensus 83 g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~ 149 (437)
|+++||+|||+++.++..+.+++.+++.++++++.+++.| ....++.|.+ +++|.+..++......+
T Consensus 69 G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 148 (406)
T PRK15402 69 GPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALL 148 (406)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888 3446678889 88899999999888889
Q ss_pred HHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHH-hhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHHHH
Q 047673 150 GILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTI-GLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDDL 228 (437)
Q Consensus 150 G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~-~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (437)
|..++|.+++.+.+.. +||+.|++.++..++..+ ..+..||+++...++.+ .++..+..++..+++.........
T Consensus 149 ~~~~g~~i~~~l~~~~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 224 (406)
T PRK15402 149 APLLGPLVGAALIHVL---PWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLS-LKELGRDYKLVLKNRRFVAGALAL 224 (406)
T ss_pred HHHHHHHHHHHHHHcc---CccHHHHHHHHHHHHHHHHHHHhCCCCCcccccccc-HHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999988877543 899999987766665544 34457776532111111 112222222222222111100000
Q ss_pred HHHhhhhhccccchhh-hhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHH
Q 047673 229 IRQSSVSKNINHPFKK-IIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIG 307 (437)
Q Consensus 229 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 307 (437)
.... ........+.. .+... .-.+..+. +.......++.+++.++.+++.||+++|+.+..+.++..++..++.
T Consensus 225 ~~~~-~~~~~~~~~~p~~~~~~---~g~~~~~~-g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~ 299 (406)
T PRK15402 225 GLVS-LPLLAWIALSPVILISG---EQLSSYEY-GLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAA 299 (406)
T ss_pred HHHH-HHHHHHHHHhHHHHHHH---hCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000000000 00000 01133444 5555666678889999999999999999998888887777766665
Q ss_pred HHHH-----HHHHHHHHHHHHhhhcc-cccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhH
Q 047673 308 SVMA-----TQLVLICVYNAGFTFLW-WPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFF 381 (437)
Q Consensus 308 ~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 381 (437)
.... ...........+++.+. .+...... ...+++.|++..++.+....++..+++.+.+.+.+..+...+..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~ 378 (406)
T PRK15402 300 LATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNL 378 (406)
T ss_pred HHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHH-hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHH
Confidence 4331 11122222222222221 22222222 23344789999999999999999999999999888776544443
Q ss_pred HHHHHHH
Q 047673 382 FGGWLIA 388 (437)
Q Consensus 382 ~~~~~~~ 388 (437)
..++..+
T Consensus 379 ~~~~~~~ 385 (406)
T PRK15402 379 FNLANGL 385 (406)
T ss_pred HHHHHHH
Confidence 3333333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-27 Score=220.22 Aligned_cols=341 Identities=18% Similarity=0.160 Sum_probs=227.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHh
Q 047673 3 VFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFA 82 (437)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 82 (437)
++++.....+.+..+..+++....++.. |.+.+++ |++..+.+++.+...++..+++++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLAAMGFAA--PAISAEW------------------GLDPVQLGFLFSAGLIGMAFGALFF 72 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHhhcc------------------CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777888888887766543 6666655 8899999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHH
Q 047673 83 STVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVAT 149 (437)
Q Consensus 83 g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~ 149 (437)
|+++||+|||+.+..+.++.+++.++..++++++.+++.| ...+++.|++ +++|+++.++...+..+
T Consensus 73 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 152 (398)
T TIGR00895 73 GPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPI 152 (398)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHH
Confidence 9999999999999999999999999999999999888888 5567889999 89999999999999999
Q ss_pred HHHHHHHHHhhhhccCCCcchHHHHHhhHHH-HHHHHHhhccCCCChhHHHhhCCCHHHHHHHHHHHhCCc---------
Q 047673 150 GILSANLLNYGTQKIKGGWGWRISLAMAVAP-ASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTA--------- 219 (437)
Q Consensus 150 G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~-~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~--------- 219 (437)
|..+++.+++.+.+. .+||+.|++.++. .+...+...++||++++..++ + .++..+..++.....
T Consensus 153 g~~~~~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 227 (398)
T TIGR00895 153 GAAVGGFLAGWLIPV---FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-R-PETVRRIVNAIAPQMQAEAQSALP 227 (398)
T ss_pred HHHHHHHHHHHHhhc---ccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-C-HHHHHHHHHHHHHhcccccccccc
Confidence 999999999887754 3899999887644 444445566788887654433 2 222222222111100
Q ss_pred ---cHHHHHHHHHHHhhhhhccccch---------------hhhhcccccc-cccccchHHHHHHHHHHHHHHHHhhhHH
Q 047673 220 ---DVQAELDDLIRQSSVSKNINHPF---------------KKIIDRKYRP-QLLSESTSLLMSALVTGGIGTVSTILPM 280 (437)
Q Consensus 220 ---~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g 280 (437)
.......+...........+..+ ...+.+.... .-.+.... +.......++.+++.++.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~ 306 (398)
T TIGR00895 228 EQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLA-ATGGALFNFGGVIGSIIFG 306 (398)
T ss_pred ccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 00000000000000000000000 0000000000 01144455 6778888899999999999
Q ss_pred HHhhhcCchhHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHH
Q 047673 281 ILADKLGRKVLFLLGGIQILVSQVMIGS-VMATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLL 358 (437)
Q Consensus 281 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~ 358 (437)
++.||+++|+..... .+..+...++.. ..+........+..+++. ...+....+..|.+|++.|+++.|+.+.+..+
T Consensus 307 ~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 385 (398)
T TIGR00895 307 WLADRLGPRVTALLL-LLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRL 385 (398)
T ss_pred HHHhhcchHHHHHHH-HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 999999998544433 333333333332 222222222222222222 23445567778999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 047673 359 FTSLVAQTVLAM 370 (437)
Q Consensus 359 ~~~~~~~~~~~~ 370 (437)
+..++|.+.|.+
T Consensus 386 g~~~g~~~~G~l 397 (398)
T TIGR00895 386 GAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHhHHhc
Confidence 999999988864
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=218.98 Aligned_cols=377 Identities=13% Similarity=0.017 Sum_probs=217.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHh
Q 047673 3 VFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFA 82 (437)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 82 (437)
+++|.+...+++.......+...++... |.+. ++ |+++.+.|++.+++.+++.++++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~l~------------------~~-g~s~~~~g~~~~~~~i~~~~~~~~~ 83 (452)
T PRK11273 25 RLRWQIFLGIFFGYAAYYLVRKNFALAM--PYLV------------------EQ-GFSRGDLGFALSGISIAYGFSKFIM 83 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHH------------------Hc-CCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455555555565565655554444332 3322 22 6799999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHhhcc----ccceeeeee------------cchhhhhhcc-cccccchHHHHHH
Q 047673 83 STVTRAFGRKASILVGGTTFLTSSAIGGAAL----DIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQV 145 (437)
Q Consensus 83 g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~----~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~ 145 (437)
|+++||+|||+++.++.++.+++.+++++++ +++.+++.| .....+.|++ +++|++++++++.
T Consensus 84 G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 163 (452)
T PRK11273 84 GSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNC 163 (452)
T ss_pred hhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHH
Confidence 9999999999999999999999999888763 566666666 2345678889 8999999999999
Q ss_pred HHHHHHH-HHHHHHhhhhccCCCcchHHHHHhhHHHHHH-HHHhhccCCCChhHHHhhCCCHHHHHHHHHH-H--hC-Cc
Q 047673 146 CVATGIL-SANLLNYGTQKIKGGWGWRISLAMAVAPASI-LTIGLLFLPETPSSIIQRNNDYQKAEKIMQI-V--RG-TA 219 (437)
Q Consensus 146 ~~~~G~~-~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~-~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~-~--~~-~~ 219 (437)
+..+|.. .+++++..+... .+||+.|++.+++.++ .++..+++||+|+....++ .++.++..++ . .+ ++
T Consensus 164 ~~~~g~~~~~~l~~~~~~~~---~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 238 (452)
T PRK11273 164 AHNVGGGLPPLLFLLGMAWF---NDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPP--IEEYKNDYPDDYNEKHEQE 238 (452)
T ss_pred HHHhhhhHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCC--hhhhhhccccccccccCCC
Confidence 9998864 455544333322 2899999987766555 4455667788775321110 1110000000 0 00 00
Q ss_pred -cHHHHH-HHHHHHhhhh---------hccccchhhhhccccccc--ccccchHHHHHHHHHHHHHHHHhhhHHHHhhhc
Q 047673 220 -DVQAEL-DDLIRQSSVS---------KNINHPFKKIIDRKYRPQ--LLSESTSLLMSALVTGGIGTVSTILPMILADKL 286 (437)
Q Consensus 220 -~~~~~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 286 (437)
...+.. ....+..... ....... ..+-+.+... -.+.... +....+..++.+++.++.|+++||+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~P~~l~~~~g~s~~~~-~~~~~~~~~~~~~g~~~~G~l~dr~ 316 (452)
T PRK11273 239 LTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGI-LDWSPTYLKEVKHFALDKS-SWAYFLYEYAGIPGTLLCGWMSDKV 316 (452)
T ss_pred ccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0000000000 0000000 0001111111 1134455 6667778888899999999999999
Q ss_pred --CchhHH-HHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHHHH
Q 047673 287 --GRKVLF-LLGGIQILVSQVMIGSVMA--TQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFT 360 (437)
Q Consensus 287 --g~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~ 360 (437)
+||... .....+..++.+.+..... .......++..+... +.......+..|.+|++.|++++|+.+...++++
T Consensus 317 ~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 396 (452)
T PRK11273 317 FRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 396 (452)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHH
Confidence 444432 2222222333222222111 112222223333222 1112223445699999999999999999999887
Q ss_pred HH-HHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhccccCCCCCHHH
Q 047673 361 SL-VAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETKNVPIEQ 407 (437)
Q Consensus 361 ~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (437)
.+ +|.+.|.+.|+.++...+...+...+.+++....+.+.++|+.||
T Consensus 397 ~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (452)
T PRK11273 397 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRHHEE 444 (452)
T ss_pred HHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 65 688999999998865444433334444444444343443443333
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=213.15 Aligned_cols=316 Identities=12% Similarity=0.080 Sum_probs=207.4
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHh---h-----ccccceeeeee-------
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGG---A-----ALDIYMLILGL------- 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~-----a~~~~~l~~~r------- 122 (437)
|+|..+.|++.+++.+++.++++++|+++||+||||++..+.+...++.+... . .++++.++++|
T Consensus 47 g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 126 (392)
T PRK12382 47 GFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGE 126 (392)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999998888777654332 2 35778888989
Q ss_pred -----cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChh
Q 047673 123 -----NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPS 196 (437)
Q Consensus 123 -----~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~ 196 (437)
...+++.|+. +++|++++++.+.+..+|..+++.+++.+.+. +|||+.+.+..+..++........||.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (392)
T PRK12382 127 SQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH---FGFAALALTTMVLPLLAWAFNGTVRKVPA 203 (392)
T ss_pred HHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 2345678999 99999999999999999999999999887754 48998877765554444333334454432
Q ss_pred HHHhhCCCHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhh-hhcccccccccccchHHHHHHHHHHHHHHHH
Q 047673 197 SIIQRNNDYQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKK-IIDRKYRPQLLSESTSLLMSALVTGGIGTVS 275 (437)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (437)
. +++ .++.++..+..... ......... ... ....+.. .+... +.... +.......++.+++
T Consensus 204 ~---~~~-~~~~~~~~~~~~~~-~~~~~l~~~----~~~--~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~ 265 (392)
T PRK12382 204 H---AGE-RPSLWSVVGLIWKP-GLGLALQGV----GFA--VIGTFVSLYFASK------GWAMA-GFTLTAFGGAFVLM 265 (392)
T ss_pred C---ccc-CchHHHHHHHHHHh-HHHHHHHHH----HHh--HHHHHHHHHHHhc------CCchh-HHHHHHHHHHHHHH
Confidence 1 111 11111111111100 000000000 000 0000100 11110 11223 45556677778899
Q ss_pred hhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccCChhhhhhHHHHHHH
Q 047673 276 TILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFL-WWPLGWLVPSEIFPLEIRSAGKSITVA 354 (437)
Q Consensus 276 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~ 354 (437)
+++.+++.||+|+|+.+..+..+..++.+++....+...........+.+.+ ..+.......|.+|+++|+++.|+.+.
T Consensus 266 ~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 345 (392)
T PRK12382 266 RVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAA 345 (392)
T ss_pred HHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999888888777777665554333222222222232222 233334455788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhh
Q 047673 355 VGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVH 394 (437)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 394 (437)
...++..+++.+.+.+.++.++...+.+.+.+.+.+.+..
T Consensus 346 ~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 346 FQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887655555544444444433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-27 Score=224.16 Aligned_cols=366 Identities=11% Similarity=-0.056 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhh
Q 047673 5 VVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFAST 84 (437)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~ 84 (437)
++.......+..+...++....++. +|.+.+++ |++..+.+++.+.+.+++.+++++.|+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~------------------gls~~~~g~~~~~~~~~~~~~~~~~G~ 93 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAPL--LPIIRDNL------------------NLTKSDIGNAGIASVSGSIFSRLAMGP 93 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333333 25666666 899999999999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee-----------cchhhhhhcc-cccccchHHHHHHHHHHHHH
Q 047673 85 VTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL-----------NAPISLRNGT-PKHIGGFNIGFQVCVATGIL 152 (437)
Q Consensus 85 l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r-----------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~ 152 (437)
++||+|||+++..+.++++++.++++++++++.++++| ....+++|++ +++|++++++......+|..
T Consensus 94 l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~ 173 (476)
T PLN00028 94 VCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGG 173 (476)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998889 2334678999 89999999999877777777
Q ss_pred HHHHHHhhhhc----c--CCCcchHHHHHhhHHHHHHHHHhhccCC-CChhHHHh---hCCCHHH--HHHHHHHHhCCcc
Q 047673 153 SANLLNYGTQK----I--KGGWGWRISLAMAVAPASILTIGLLFLP-ETPSSIIQ---RNNDYQK--AEKIMQIVRGTAD 220 (437)
Q Consensus 153 ~~~~~~~~l~~----~--~~~~~wr~~f~~~~i~~~~~~~~~~~l~-esp~~~~~---~~~~~~~--~~~~~~~~~~~~~ 220 (437)
+++.+...+.. . .+..|||+.|++.+++.++..+..++++ +.|+...+ ++.+.++ ..+..++..++..
T Consensus 174 ~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (476)
T PLN00028 174 VTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYR 253 (476)
T ss_pred HHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCch
Confidence 77665544322 1 1124899999998877666554444443 33421000 0000000 0000011000000
Q ss_pred HHHHHHHHHHHhhhhhccccchh-hhhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchh-------HH
Q 047673 221 VQAELDDLIRQSSVSKNINHPFK-KIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKV-------LF 292 (437)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-------~~ 292 (437)
............... .....+. ..+.. ..-.+...+ +.......++.++++++.|+++||++||+ ..
T Consensus 254 ~~~~~~~~~~~~~~~-~~~~~~~p~~l~~---~~g~s~~~a-~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~ 328 (476)
T PLN00028 254 TWILALTYGYSFGVE-LTMDNIIAEYFYD---RFGLSLETA-GAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWAL 328 (476)
T ss_pred hHHHHHHHHHHHHHH-HHHHhHHHHHHHH---hcCCCHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHH
Confidence 000000000000000 0000000 00100 011245556 77888889999999999999999998651 22
Q ss_pred HHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047673 293 LLGGIQILVSQVMIGSVMATQ--LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAM 370 (437)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 370 (437)
.....+.++..+.+....+.. ....+++..+... ..+..+.+..+.. ++.++++.|+.+..+++++.+++.+.+ .
T Consensus 329 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~ 405 (476)
T PLN00028 329 WIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQA-ACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-T 405 (476)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-hhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-h
Confidence 222222222222222222222 1112222222211 2223344555654 468999999998888888888776654 1
Q ss_pred HHhcccchhhHHHHHHHHHHHHhhhccc
Q 047673 371 LYHFKAGVFFFFGGWLIAMTTFVHFFLP 398 (437)
Q Consensus 371 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 398 (437)
.+..++...+.+.+++.+++.++.++.+
T Consensus 406 ~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 406 GSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred cCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 1222344333333334444444444443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=207.99 Aligned_cols=344 Identities=12% Similarity=0.108 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 047673 9 CIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRA 88 (437)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr 88 (437)
.+.+.++.++.+.+.+..++.. |.+.+++ |+|..+.|++.+.+.++..+++++.|+++||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l--p~~~~~~------------------~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr 67 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLV--PLWLAQE------------------HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR 67 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHH--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4555677788889988888765 7888877 8899999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHH
Q 047673 89 FGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSAN 155 (437)
Q Consensus 89 ~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~ 155 (437)
+|||+.+..+.++.+++.+++++++|++.++++| .....+.+.. +++|+++++.+..+..+|..+|+
T Consensus 68 ~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 147 (381)
T PRK03633 68 IGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQ 147 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 2234456778 88999999999999999999999
Q ss_pred HHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHHHHHHHhhhh
Q 047673 156 LLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDDLIRQSSVS 235 (437)
Q Consensus 156 ~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (437)
.+++.+.... .|...+....+...+..+.....+|+++ ++++ .++. .+..+++.................
T Consensus 148 ~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 217 (381)
T PRK03633 148 LLVSKVSTEL---MSVLPWVTGLVLAAILPLLFTRILNQQA---ENHD-STSI---WPMLKLRQARLGVNGCIISGIVLG 217 (381)
T ss_pred HHHhcccccc---cchHHHHHHHHHHHHHHHHHhcccCCCC---CCCC-CCCH---HHHHHhcchHHHHHHHHHHHHHHH
Confidence 9998876432 1222222221111111122222333211 0110 1110 111111110000000000000000
Q ss_pred hccccchhhhhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 047673 236 KNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLV 315 (437)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (437)
....+...+ ....-.+.... +.......+..++++++.+++.||+++|+.+..+.....++...+.. ......
T Consensus 218 --~~~~~lp~~---~~~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~ 290 (381)
T PRK03633 218 --SLYGLMPLY---LNHQGMSDASI-GFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLS-QAAMAP 290 (381)
T ss_pred --HHHHHHHHH---HHHcCCCHHHH-HHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhh-hHHHHH
Confidence 000111111 11112244455 67777888899999999999999999999888877777666554431 111111
Q ss_pred HHHHHHHHhhhcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 047673 316 LICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMT 390 (437)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 390 (437)
...++..+ .....|.......|..|++.++...+..+...++|+.++|.+.|.+.|+.++...+...+.+.+..
T Consensus 291 ~~~l~g~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~ 364 (381)
T PRK03633 291 ALFILGAA-GFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIY 364 (381)
T ss_pred HHHHHHHH-HHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 12222211 223445555666788888888888888888889999999999999999888654444443333333
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-26 Score=210.43 Aligned_cols=329 Identities=10% Similarity=0.090 Sum_probs=205.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHH-HHHHHHHHHHHHhhccccceeeeee------------c
Q 047673 57 CKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILV-GGTTFLTSSAIGGAALDIYMLILGL------------N 123 (437)
Q Consensus 57 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~~~~~~~~~a~~~~~l~~~r------------~ 123 (437)
+|.++.+.|++.+++.++..+.+++.|+++||+||||.++. +..+..++.+++++++|++.+++.| .
T Consensus 28 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~ 107 (375)
T TIGR00899 28 VRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQ 107 (375)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHH
Confidence 38899999999999999999999999999999999887654 5666677788889999999888888 2
Q ss_pred chhhhhhcc-cccccch--HHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHH-hhccCCCChhHHH
Q 047673 124 APISLRNGT-PKHIGGF--NIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTI-GLLFLPETPSSII 199 (437)
Q Consensus 124 ~~~~i~~~~-~~~r~~~--~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~-~~~~l~esp~~~~ 199 (437)
..++..|+. +++|++. .+....+.++|.++++.+++.+.+. .+||+.|++.++..++..+ .++++||+|+...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (375)
T TIGR00899 108 LFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG---FGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAP 184 (375)
T ss_pred HHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHhCCCcccCcc
Confidence 334455666 5556544 5777888899999999999988754 3899999998876665544 3455788764321
Q ss_pred hhCCCHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhcccccccccccchHHHHHHHHHHHHHHHHhhhH
Q 047673 200 QRNNDYQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILP 279 (437)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (437)
++.+ .++ .++..++++.........................+... .-.+..+. +..........+++.++.
T Consensus 185 ~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~-g~~~~~~~~~~~~~~~~~ 255 (375)
T TIGR00899 185 GALT-RLE----VRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHE---LGLPDKLA-GLMMGTAAGLEIPFMLLA 255 (375)
T ss_pred cccC-cch----hhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHH---cCCCHHHH-HHHHHHHHHHHHHHHHhH
Confidence 1111 111 11111111111100000000000000000000000000 01133444 555556666778888999
Q ss_pred HHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHH
Q 047673 280 MILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLL 358 (437)
Q Consensus 280 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~ 358 (437)
+++.||++||+.+..+.+...+....+....+...........+++. ...+....+..|..|++ ++++.++.+...++
T Consensus 256 g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 334 (375)
T TIGR00899 256 GYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRV 334 (375)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHH
Confidence 99999999999887776665555444433333322222222222222 22344455667887764 67999999999999
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhccc
Q 047673 359 FTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLP 398 (437)
Q Consensus 359 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 398 (437)
+..+++.+.|.+.+..++...+...++..+.+.+...+++
T Consensus 335 g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 335 GWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIK 374 (375)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheec
Confidence 9999999999999988876555555555555555555443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.1e-26 Score=212.71 Aligned_cols=351 Identities=15% Similarity=0.066 Sum_probs=226.7
Q ss_pred HHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChh-----HHHHHHHHHHHHHHHHHHHhhhh
Q 047673 11 VAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQ-----LLAAFTSSLYIAGLIASLFASTV 85 (437)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~-----~~g~~~s~~~l~~~i~~~~~g~l 85 (437)
...++.++.++..+...+.. |.+.+++ |++.. +.|++.+++.++..+++++.|++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l--~~~~~~~------------------g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l 77 (408)
T PRK09874 18 VAWLGCFLTGAAFSLVMPFL--PLYVEQL------------------GVTGHSALNMWSGLVFSITFLFSAIASPFWGGL 77 (408)
T ss_pred HHHHHHHHHHHHHHHhhhhH--HHHHHHh------------------CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666665543 7777766 55543 35899999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee-----------cchhhhhhcc-cccccchHHHHHHHHHHHHHH
Q 047673 86 TRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL-----------NAPISLRNGT-PKHIGGFNIGFQVCVATGILS 153 (437)
Q Consensus 86 ~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r-----------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~ 153 (437)
+||+|||+.+..+.++.+++.+++.++++++.+++.| ....++.+.. +++|+++.++...+..+|.++
T Consensus 78 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 157 (408)
T PRK09874 78 ADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALL 157 (408)
T ss_pred hhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888 3345677888 899999999999999999999
Q ss_pred HHHHHhhhhccCCCcchHHHHHhhHHHHHHHHH-hhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHH-HHHHH
Q 047673 154 ANLLNYGTQKIKGGWGWRISLAMAVAPASILTI-GLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELD-DLIRQ 231 (437)
Q Consensus 154 ~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~-~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 231 (437)
++.+++.+.+.. +||+.|++.++..++..+ ..+++||.++... +++ ..+.++..+..++......... .....
T Consensus 158 ~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (408)
T PRK09874 158 GPLAGGLLADSY---GLRPVFFITASVLFLCFLVTLFCIRENFQPVS-KKE-MLHMREVVTSLKNPKLVLSLFVTTLIIQ 232 (408)
T ss_pred HHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHhccCccccc-chh-hhHHHHHHHhCcCCchHHHHHHHHHHHH
Confidence 999999887543 799999987766655444 3445666532111 111 1111222222222111110000 00000
Q ss_pred hhhhhccccchhhhhcccccccccccc----hHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHH
Q 047673 232 SSVSKNINHPFKKIIDRKYRPQLLSES----TSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIG 307 (437)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 307 (437)
.... ...++...+... ...+.. .. +......+++.+++.+..+++.||++||+.+..+..+..++.+...
T Consensus 233 ~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~-g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 306 (408)
T PRK09874 233 VATG--SIAPILTLYVRE---LAGNVSNIAFIS-GMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMS 306 (408)
T ss_pred HHHH--HHHHHHHHHHHH---HhccchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Confidence 0000 000000000000 000111 12 3445556778888899999999999999998888777766665554
Q ss_pred HHHHHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Q 047673 308 SVMATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWL 386 (437)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 386 (437)
...+.....+.....+.+. ...+.......+..|++.+++.+++.+....++..++|.+.|.+.+..++...+...++.
T Consensus 307 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~ 386 (408)
T PRK09874 307 FVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGV 386 (408)
T ss_pred HhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHH
Confidence 4433332222222222222 223333445567788899999999999999999999999999999988866555444444
Q ss_pred HHHHHH
Q 047673 387 IAMTTF 392 (437)
Q Consensus 387 ~~~~~~ 392 (437)
.+.+.+
T Consensus 387 ~l~~~~ 392 (408)
T PRK09874 387 VLFNAV 392 (408)
T ss_pred HHHHHH
Confidence 444333
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-26 Score=209.38 Aligned_cols=334 Identities=11% Similarity=-0.007 Sum_probs=225.3
Q ss_pred HHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhH
Q 047673 14 SGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKA 93 (437)
Q Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~ 93 (437)
++.+...+..+...... |.+..++ +.++.+.|++.+++.++..++++++|+++||+|||+
T Consensus 6 ~~~~~~~~~~~~~~~~~--~~~~~~~------------------~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~ 65 (365)
T TIGR00900 6 AAQLISLIGTAITQVAL--PLYVLAG------------------TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKK 65 (365)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHh------------------hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhH
Confidence 34455555555555333 5666665 678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc-----ccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHH
Q 047673 94 SILVGGTTFLTSSAIGGAAL-----DIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSAN 155 (437)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~a~-----~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~ 155 (437)
++..+.++..++.++..+++ |++.+++.| ...+++.|++ +++|+++.++.+.+..+|.++++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 145 (365)
T TIGR00900 66 VMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGP 145 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999988888877 999999889 5668889999 99999999999999999999999
Q ss_pred HHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhcc--CCCChhHHHhhCC-C-HHHHHHHHHHHhCCccHHHHHHHHHHH
Q 047673 156 LLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLF--LPETPSSIIQRNN-D-YQKAEKIMQIVRGTADVQAELDDLIRQ 231 (437)
Q Consensus 156 ~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~--l~esp~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (437)
.+++.+.+.. +||+.|++.++..++..+..+. .||.++...++.+ + .++..+..+...+++............
T Consensus 146 ~l~~~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (365)
T TIGR00900 146 GIGGLMYATL---GIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLF 222 (365)
T ss_pred HHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHH
Confidence 9999887543 8999998877665554443332 3443321000000 0 011111122222222111110000000
Q ss_pred hhhhhccccchhhhhccccccc--ccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHH
Q 047673 232 SSVSKNINHPFKKIIDRKYRPQ--LLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSV 309 (437)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 309 (437)
.... ......+.+.+... -.+..+. +.......++.+++.++.+++.||++||+.+..+..+.+++...+...
T Consensus 223 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (365)
T TIGR00900 223 NLVF----APAIVALFPYVQSKYLGRGSTHY-GWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT 297 (365)
T ss_pred HHHH----HHHHHHHhHHHHHHHhCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh
Confidence 0000 00000000111111 1244455 777888889999999999999999999998888777777776666655
Q ss_pred HH-HHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047673 310 MA-TQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFK 375 (437)
Q Consensus 310 ~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 375 (437)
.. .....+..+..+++. ...+....+..|..|++.|+++.|+.+...+++..+++.+.|.+.|..|
T Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 298 PPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 43 332223333333333 2344556677899999999999999999999999999999999988653
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-27 Score=220.95 Aligned_cols=354 Identities=10% Similarity=-0.032 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhh
Q 047673 4 FVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFAS 83 (437)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g 83 (437)
+.|.++..+.++......+...++. ..|++.+++ |++..+.+++.+.+.++..++.++.|
T Consensus 16 ~~w~i~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~------------------g~s~~~~~~~~s~~~~~~~~~~~~~G 75 (455)
T TIGR00892 16 WGWVVLGATFVSIGFSYAFPKAVTV--FFKELQQIF------------------QATYSETAWISSIMLAVLYAGGPISS 75 (455)
T ss_pred cchHHHHHHHHHHHHHHhhhcchhh--hHHHHHHHh------------------CcchhHHHHHHHHHHHHHHHhhHHHH
Confidence 4565555554444332223222332 236666666 88999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeee-ee------------cchhhhhhcccccccchHHHHHHHHHHH
Q 047673 84 TVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLIL-GL------------NAPISLRNGTPKHIGGFNIGFQVCVATG 150 (437)
Q Consensus 84 ~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~-~r------------~~~~~i~~~~~~~r~~~~~~~~~~~~~G 150 (437)
+++||+|||++++.+.++.++++++++++++++.+++ .| ....++.++++++|+++.++.+.+..+|
T Consensus 76 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g 155 (455)
T TIGR00892 76 ILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVF 155 (455)
T ss_pred HHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHH
Confidence 9999999999999999999999999999999988764 34 2224456655778999999999999999
Q ss_pred HHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhcc-CCCChhHHHhhCCCHHHH--HHHHHHHhCCccHHHHHHH
Q 047673 151 ILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLF-LPETPSSIIQRNNDYQKA--EKIMQIVRGTADVQAELDD 227 (437)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~-l~esp~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 227 (437)
..+++.+++.+.+.. |||+.|++.++..++..+..++ .++.+.....+.++.+.. ....++....+ ...+..+
T Consensus 156 ~~~~~~l~~~l~~~~---gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 231 (455)
T TIGR00892 156 LSTLAPLNQYLFESF---GWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKS-TAEKINR 231 (455)
T ss_pred HHHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccc-hhhhhhh
Confidence 999999988877543 8999999988766654443333 232211000000000000 00000000000 0000000
Q ss_pred HH--HHhhhhh------------ccccchhhhhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhc--CchhH
Q 047673 228 LI--RQSSVSK------------NINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKL--GRKVL 291 (437)
Q Consensus 228 ~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~ 291 (437)
.. ....... .........+.......-.+.... +....+.+++.++++++.+++.||. ++|+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 310 (455)
T TIGR00892 232 FLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEA-AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQ 310 (455)
T ss_pred hcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHhcccccCHHHH
Confidence 00 0000000 000000000000000111245555 7788888899999999999999973 33433
Q ss_pred HHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 047673 292 FLLG--GIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVL 368 (437)
Q Consensus 292 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 368 (437)
.... .++.+++.+......+...........+++. ...+.......|.+|++.+++++|+.+....+++.++|.+.|
T Consensus 311 ~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G 390 (455)
T TIGR00892 311 YLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAG 390 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHcccccee
Confidence 3322 2222333333332222222222222223332 233444566678999999999999999999999999999999
Q ss_pred HHHHhcc-cchhhHH
Q 047673 369 AMLYHFK-AGVFFFF 382 (437)
Q Consensus 369 ~~~~~~g-~~~~~~~ 382 (437)
.+.+..+ +...+..
T Consensus 391 ~l~~~~g~~~~~f~~ 405 (455)
T TIGR00892 391 RLVDATKNYKYIFYA 405 (455)
T ss_pred eeehhcCCcchHHHH
Confidence 9998775 5433333
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-28 Score=213.86 Aligned_cols=345 Identities=15% Similarity=0.133 Sum_probs=225.6
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhh
Q 047673 4 FVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFAS 83 (437)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g 83 (437)
+.++.++++++...+...|...+..+. +..+++| |++++..|++.+.+.+.+.+.+|++|
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iagv~--~~v~~~f------------------ni~~s~~Gll~~vf~v~~~i~sPl~g 89 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAGVL--KEVQTYF------------------NISDSELGLLQTVFIVVFMIASPLFG 89 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhh--HHHHHhc------------------CCCchhccchhHHHHHHHHHHHHHHH
Confidence 456778888999999999999988765 6666666 89999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHHH
Q 047673 84 TVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVATG 150 (437)
Q Consensus 84 ~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G 150 (437)
+++|||.||+++.+|..+|.++.++++++..||+++++| .++.+++|.+ .++|++++++++.+..+|
T Consensus 90 yLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvG 169 (493)
T KOG1330|consen 90 YLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVG 169 (493)
T ss_pred HHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccc
Confidence 999999999999999999999999999999999999999 8899999999 999999999999999999
Q ss_pred HHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHh-hccCCCChhHHHhhCCCHHH----H---HHHHHHHhCCc-cH
Q 047673 151 ILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIG-LLFLPETPSSIIQRNNDYQK----A---EKIMQIVRGTA-DV 221 (437)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~-~~~l~esp~~~~~~~~~~~~----~---~~~~~~~~~~~-~~ 221 (437)
..+|.+.+..+.+... .|||.|++.++++++..++ +++.+|++|--..+.++..+ . -+.++.+.+.+ ..
T Consensus 170 sglG~vvgs~va~~~~--~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v 247 (493)
T KOG1330|consen 170 SGLGYVVGSVVASLTF--WWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFV 247 (493)
T ss_pred cceeEEeeeeeccCcc--ceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCcee
Confidence 9999999999887764 4999999988887776554 56677755311001000000 0 00011111100 00
Q ss_pred HHHHHHHHHHhhhhhccccchhhhhcccccccc--cccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCch----hHHH--
Q 047673 222 QAELDDLIRQSSVSKNINHPFKKIIDRKYRPQL--LSESTSLLMSALVTGGIGTVSTILPMILADKLGRK----VLFL-- 293 (437)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~~~-- 293 (437)
...+.-.. ........+|...-...+...+ .+.+.. ..+..+...++.+|.+.+|.++||+.|+ ....
T Consensus 248 ~~sl~~~a---~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~-~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~ 323 (493)
T KOG1330|consen 248 LSSLGIIA---AQFVIGSLSWWAPAFIYYSYELIGFDHNAT-LIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRAS 323 (493)
T ss_pred eehHHHHH---HHHhccccchhhhhHHHHHHHHhCCccccc-hhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHH
Confidence 00000000 0000001111111000011111 145555 6788888899999999999999995321 1111
Q ss_pred -----HhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh--hcccccccccccccCChhhhhhHHHHHHHHHHHHH-HHHH
Q 047673 294 -----LGGIQILVSQVMIGSVMATQ-LVLICVYNAGFT--FLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFT-SLVA 364 (437)
Q Consensus 294 -----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~-~~~~ 364 (437)
.+....+..+.+........ .....++.++.. ......+.-+..|++|++.|.++.++...+..+.+ +-+|
T Consensus 324 q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p 403 (493)
T KOG1330|consen 324 QLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASP 403 (493)
T ss_pred HHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCc
Confidence 11112222222222222211 222222222222 22222333444799999999999999887766544 4455
Q ss_pred HHHHHHHHhc
Q 047673 365 QTVLAMLYHF 374 (437)
Q Consensus 365 ~~~~~~~~~~ 374 (437)
++.|.+.|+.
T Consensus 404 ~ivGilsd~l 413 (493)
T KOG1330|consen 404 YIVGILSDKL 413 (493)
T ss_pred ceehhHHHHh
Confidence 5999988865
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=203.63 Aligned_cols=325 Identities=13% Similarity=0.033 Sum_probs=216.4
Q ss_pred HHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHH
Q 047673 16 GLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASI 95 (437)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~ 95 (437)
.+...++.....+.. |.+.+++ |.++.+.+++.+.+.++..+++++.|+++||+|||+++
T Consensus 14 ~~~~~~~~~~~~~~~--p~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 73 (385)
T TIGR00710 14 SILGPLGIDMYLPAF--PEIAADL------------------STPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVL 73 (385)
T ss_pred HHHHHHHHHHhcccH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH
Confidence 344555666666554 7777777 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhh
Q 047673 96 LVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQ 162 (437)
Q Consensus 96 ~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 162 (437)
..+.++.+++.++..++++++.+++.| ...+++.|++ +++|+++.++.+....+|..+++.+++.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 153 (385)
T TIGR00710 74 LLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL 153 (385)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 4567789999 899999999999999999999999999877
Q ss_pred ccCCCcchHHHHHhhHHHHHHHHH-hhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccc
Q 047673 163 KIKGGWGWRISLAMAVAPASILTI-GLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHP 241 (437)
Q Consensus 163 ~~~~~~~wr~~f~~~~i~~~~~~~-~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (437)
+.. +||+.|++.++..++..+ ..++.||+++... +.+ .++..+..++..+++................. ....
T Consensus 154 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 227 (385)
T TIGR00710 154 VWL---SWHAIFAFLSLAGILLSALIFFILPETLPYEA-RIQ-ISTYFETFLLLLKSKMFWGYALIYGASFGGFF-AFFS 227 (385)
T ss_pred HHc---CHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcc-cCC-HHHHHHHHHHHHcCchhHHHHHHHHHHHHHHH-HHHH
Confidence 543 899999887766555443 3455677653211 111 12222222222222211110000000000000 0000
Q ss_pred hhh-hhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHH----H-HH
Q 047673 242 FKK-IIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMAT----Q-LV 315 (437)
Q Consensus 242 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~ 315 (437)
+.. .+.. ..-.+..+. +.......++.+++.++.+++.||+++|+.+..+..+..++...+...... . ..
T Consensus 228 ~~~~~~~~---~~g~~~~~~-g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (385)
T TIGR00710 228 GAPFVYID---IMGVSPSVF-GLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMI 303 (385)
T ss_pred cChHHHHH---HcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 000 0000 011244555 777888889999999999999999999998888777776666555443211 1 11
Q ss_pred HHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047673 316 LICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAML 371 (437)
Q Consensus 316 ~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 371 (437)
.......+.+. ...+.......|..| +.++++.++.+...+.++.+.+++.+...
T Consensus 304 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~ 359 (385)
T TIGR00710 304 IGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIH 359 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22222222222 223334455567776 57899999999988887777777777443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=213.13 Aligned_cols=339 Identities=10% Similarity=0.052 Sum_probs=228.3
Q ss_pred HHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047673 8 SCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTR 87 (437)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d 87 (437)
..+.++++.++..++....++.. |.+.+++ |.++.+.+++.+.+.++..++.+++|+++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~------------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 70 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTAL--PSMAQSL------------------GESPLHMHMVIVSYVLTVAVMLPASGWLAD 70 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH--HHHHHHh------------------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888877643 7887777 889999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHHHHHHH
Q 047673 88 AFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSA 154 (437)
Q Consensus 88 r~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~ 154 (437)
|+|||+++..+.++.+++.+++.++++++.++++| ...+++.|++ +++|+++.++.....++|..++
T Consensus 71 ~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 150 (471)
T PRK10504 71 RVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLG 150 (471)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999 3456678999 8899999999999999999999
Q ss_pred HHHHhhhhccCCCcchHHHHHhhHHHHHHHHHh-hccCCCChhHHHhhCCCHHHHHHHH--------H-HHhCCc---cH
Q 047673 155 NLLNYGTQKIKGGWGWRISLAMAVAPASILTIG-LLFLPETPSSIIQRNNDYQKAEKIM--------Q-IVRGTA---DV 221 (437)
Q Consensus 155 ~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~-~~~l~esp~~~~~~~~~~~~~~~~~--------~-~~~~~~---~~ 221 (437)
|.+++.+.+. .+||+.|.+......+..+. ....|+.+. ++.+ .+...... . ...+.+ ..
T Consensus 151 ~~~~g~l~~~---~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (471)
T PRK10504 151 PALGGLLVEY---ASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRR-FDLSGFLLLAVGMATLTLALDGSKGLGLS 223 (471)
T ss_pred hHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCC-CChHHHHHHHHHHHHHHHHHhcCCcCCcc
Confidence 9999988764 38999999877655554443 334454331 1111 11110000 0 000000 00
Q ss_pred HHHHHH--------H---HHHhhhhhccccchhhhhccccccccc---------------------------ccchHHHH
Q 047673 222 QAELDD--------L---IRQSSVSKNINHPFKKIIDRKYRPQLL---------------------------SESTSLLM 263 (437)
Q Consensus 222 ~~~~~~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~ 263 (437)
...... . .........+..+. ++++++...... +.... +.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-g~ 301 (471)
T PRK10504 224 PLAIAGLVAVGVVALLLYLLHARNNNRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHA-GL 301 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH-HH
Confidence 000000 0 00000000011111 122222111110 34444 66
Q ss_pred HHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHH-H--HHHHHHHH--HHhhhcccccccccccc
Q 047673 264 SALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMAT-Q--LVLICVYN--AGFTFLWWPLGWLVPSE 338 (437)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~--~~~~~~~~~~~~~~~~~ 338 (437)
......+..+++.++.+++.||+|+|+++..+..+.++...++...... . ........ .+.+....+ ......+
T Consensus 302 ~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~ 380 (471)
T PRK10504 302 MMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSS-MNTLTLK 380 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 6777777788888999999999999999988888777766655543211 1 11111222 222222223 3455568
Q ss_pred cCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047673 339 IFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKA 376 (437)
Q Consensus 339 ~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 376 (437)
..|++.++.+.|+.++...++..+++.+.+.+.+..++
T Consensus 381 ~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 381 DLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred cCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 89999999999999999999999999999988876654
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-25 Score=201.92 Aligned_cols=330 Identities=20% Similarity=0.224 Sum_probs=240.5
Q ss_pred HHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 047673 11 VAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFG 90 (437)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G 90 (437)
.++++.+..+++....++.. |.+.+++ |.++.+.+++.+...++..+++++.|+++||+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g 62 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPAL--PLLAEDL------------------GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFG 62 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhH--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Confidence 34556677777777766554 5666665 779999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHH
Q 047673 91 RKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLL 157 (437)
Q Consensus 91 rr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~ 157 (437)
||+.+..+.++..++.++..++++++.++++| ...+++.|++ +++|++..++.+.+..+|..+++.+
T Consensus 63 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 142 (352)
T cd06174 63 RRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLL 142 (352)
T ss_pred CchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988 5667889999 8899999999999999999999999
Q ss_pred HhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhc
Q 047673 158 NYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDDLIRQSSVSKN 237 (437)
Q Consensus 158 ~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (437)
++.+.+.. +||+.+++.++..++..+...+++ |+... --....... .....
T Consensus 143 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~-----------------~~~~~- 193 (352)
T cd06174 143 GGLLAESL---GWRWLFLILAILGLLLALLLLFLL--RLLLL------LALAFFLLS-----------------FGYYG- 193 (352)
T ss_pred HHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHH--HHHHH------HHHHHHHHH-----------------hHHHH-
Confidence 99887654 699999988877666555544433 11100 000000000 00000
Q ss_pred cccchhhhhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchh-HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047673 238 INHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKV-LFLLGGIQILVSQVMIGSVMATQLVL 316 (437)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (437)
.........+... -.+..+. +.......++..++.++.+++.||++||+ .+..+..+..++.+.+....+.....
T Consensus 194 ~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 269 (352)
T cd06174 194 LLTYLPLYLQEVL---GLSAAEA-GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL 269 (352)
T ss_pred HHHHHHHHHHHhc---CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 0000000111000 1134455 78888899999999999999999999999 88888888888887777655433222
Q ss_pred HHHHHHHhh-hcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHh
Q 047673 317 ICVYNAGFT-FLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFV 393 (437)
Q Consensus 317 ~~~~~~~~~-~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 393 (437)
......+.+ ....+....+..|..|+++|++..|+.+....++..+++.+.+.+.+..++...+....+..+.+.+.
T Consensus 270 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~ 347 (352)
T cd06174 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347 (352)
T ss_pred HHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 233333333 23455667777899999999999999999999999999999999998877665555544444444443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-26 Score=216.10 Aligned_cols=350 Identities=13% Similarity=-0.023 Sum_probs=221.0
Q ss_pred chHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhh----hhcccccccCCcccCChhHHHHHHHHHHHHHHH
Q 047673 2 TVFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVY----RKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLI 77 (437)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~----~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i 77 (437)
++..|.+..++.++......|...++... +...++-..+.+ .+...++.-++|++++..+.|++.+.+.+++.+
T Consensus 14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~ 91 (465)
T TIGR00894 14 CSFRLFLSFLLHICNVIIIAQRICLSLTM--VAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQII 91 (465)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhheEEE--EEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHH
Confidence 45677888888888888888998888654 444432110000 000111222347899999999999999999999
Q ss_pred HHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhc--cccceeeeee------------cchhhhhhcc-cccccchHHH
Q 047673 78 ASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAA--LDIYMLILGL------------NAPISLRNGT-PKHIGGFNIG 142 (437)
Q Consensus 78 ~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a--~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~ 142 (437)
++++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.| ....++.|++ +++|++++++
T Consensus 92 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 171 (465)
T TIGR00894 92 IQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM 171 (465)
T ss_pred HHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999999998887554 5678888888 5567889999 8999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhh-ccCCCChhHHHhhCCCHHHHHHHHHHH-hCCcc
Q 047673 143 FQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGL-LFLPETPSSIIQRNNDYQKAEKIMQIV-RGTAD 220 (437)
Q Consensus 143 ~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~-~~l~esp~~~~~~~~~~~~~~~~~~~~-~~~~~ 220 (437)
...+..+|.++++.+++.+.+.. .+||+.|++.++..++..+.+ .+.+|+|+... +.+ +++. +..++. .+++.
T Consensus 172 ~~~~~~~g~~i~~~l~~~l~~~~--~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~-~~~-~~~~-~~i~~~~~~~~~ 246 (465)
T TIGR00894 172 STSGFQLGTFIFLPISGWLCESW--GGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP-CIS-KFEK-KYINSSLQGQKG 246 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--CCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC-CCC-HHHH-HHHHhhcccccC
Confidence 99999999999999998887542 289999999887776655544 44566664211 111 1111 111110 00000
Q ss_pred HHHHHHHHHHHhhhhhccccchhhhhcccccc-------------------------c--ccccchHHHHHHHHHHHHHH
Q 047673 221 VQAELDDLIRQSSVSKNINHPFKKIIDRKYRP-------------------------Q--LLSESTSLLMSALVTGGIGT 273 (437)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~--~~~~~~~~~~~~~~~~~~~~ 273 (437)
....+..++++++.+..+ . -.+..+. +.......++.+
T Consensus 247 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~-g~~~~~~~~~~~ 311 (465)
T TIGR00894 247 --------------STRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKEN-GLLSSLPYLFAW 311 (465)
T ss_pred --------------CCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHh-HHHHHHHHHHHH
Confidence 000011122222211111 0 0145556 777788889999
Q ss_pred HHhhhHHHHhhhcCchhHH--------HHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhc-ccccccccccccCC
Q 047673 274 VSTILPMILADKLGRKVLF--------LLGGIQILVSQVMIGSVM---ATQLVLICVYNAGFTFL-WWPLGWLVPSEIFP 341 (437)
Q Consensus 274 ~~~~~~g~l~d~~g~~~~~--------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p 341 (437)
++.++.|+++||+++|+.. ..+......+...+.... .......++...+...+ ..+.......|..|
T Consensus 312 i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 391 (465)
T TIGR00894 312 LCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP 391 (465)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh
Confidence 9999999999997644211 111111111111111111 11111112222122111 22223334446666
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047673 342 LEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHF 374 (437)
Q Consensus 342 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 374 (437)
+.+|.+.|+.+..+.+++.++|.+.|.+.+..
T Consensus 392 -~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~ 423 (465)
T TIGR00894 392 -RFLGFIKGITGLPGFIGGLIASTLAGNILSQD 423 (465)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCC
Confidence 48999999999999999999999999887654
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-25 Score=212.40 Aligned_cols=338 Identities=15% Similarity=0.110 Sum_probs=234.0
Q ss_pred HHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047673 8 SCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTR 87 (437)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d 87 (437)
+...++++.+...+|..+.+... |.+.+++ |.+..+.+++.+.+.++..++.++.|+++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~------------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 62 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAI--PTIAGDL------------------GSSLSQVQWVITSYMLANAISIPLTGWLAK 62 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHhc------------------CCChhhhhHHHHHHHHHHHHHHHhHHHHHH
Confidence 45677788899999998888554 7777777 789999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHHHHHHH
Q 047673 88 AFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSA 154 (437)
Q Consensus 88 r~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~ 154 (437)
|+|||+++..+.++..++++++++++|++.++++| ...+++.|++ +++|+++.+++..+..+|..++
T Consensus 63 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g 142 (485)
T TIGR00711 63 RFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALG 142 (485)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999 5567889999 9999999999999999999999
Q ss_pred HHHHhhhhccCCCcchHHHHHhhHHHHHHHHHh-hccCCCChhHHHhhCCCHHHHHHH------------HHHHhCCccH
Q 047673 155 NLLNYGTQKIKGGWGWRISLAMAVAPASILTIG-LLFLPETPSSIIQRNNDYQKAEKI------------MQIVRGTADV 221 (437)
Q Consensus 155 ~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~-~~~l~esp~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 221 (437)
+.+++.+.+. ++||+.|++.+...++..+. .+++||+++. ++++ .+..... ..+-.+....
T Consensus 143 ~~~~~~l~~~---~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~d~~g~~l~~~~~~~~~~~~~~~~~~~~~ 216 (485)
T TIGR00711 143 PTLGGWIIEN---YHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASEN-FDFLGLLLLSVGLGSLLYGLSEGPERGWF 216 (485)
T ss_pred hccHhHhccC---cCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCC-CcHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 9999988754 48999999877666554443 4456664321 1111 1111000 0000000000
Q ss_pred -HHHHHHH-----------HHHhhhhhccccchhhhhcccccccc---------------------------cccchHHH
Q 047673 222 -QAELDDL-----------IRQSSVSKNINHPFKKIIDRKYRPQL---------------------------LSESTSLL 262 (437)
Q Consensus 222 -~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~ 262 (437)
....... .......+.+..+ .+.++++..... .+..+. +
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~-g 294 (485)
T TIGR00711 217 DSNEILILSITGLVAIIAFVVWELTDDNPLVD-LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQA-G 294 (485)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHcCCCCccC-HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-H
Confidence 0000000 0000000000001 112222211100 145556 7
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHH----HHH--HHHHHHHHHHhhhcccccccccc
Q 047673 263 MSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVM----ATQ--LVLICVYNAGFTFLWWPLGWLVP 336 (437)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~ 336 (437)
.......++.+++.++.|++.||+|||+.+..+..+.+++...+.... ... .....+...+.+....+.. ...
T Consensus 295 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~ 373 (485)
T TIGR00711 295 LHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLT-TIA 373 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 788888899999999999999999999998888887777776655211 111 2222223333333333333 334
Q ss_pred cccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047673 337 SEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHF 374 (437)
Q Consensus 337 ~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 374 (437)
.+..|++.++++.|+.+....+|+.+++.+.+.+.++.
T Consensus 374 ~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 374 LSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999888754
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=209.56 Aligned_cols=370 Identities=13% Similarity=0.005 Sum_probs=216.8
Q ss_pred HHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 047673 6 VLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTV 85 (437)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l 85 (437)
+...+...++......+........ |.+ +++ |+++.+.+++.+++.++..+++++.|++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~--p~~-~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~G~l 84 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAM--PYL-VEQ------------------GFSKGELGFALSAISIAYGFSKFIMGSV 84 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhh--HHH-HHc------------------CCCHhHhHHHHHHHHHHHHHhhhccchh
Confidence 4455555566666666665555332 333 333 7899999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHhhc----cccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHH
Q 047673 86 TRAFGRKASILVGGTTFLTSSAIGGAA----LDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVA 148 (437)
Q Consensus 86 ~dr~Grr~~~~~~~~~~~~~~~~~~~a----~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~ 148 (437)
+||+|||+.+..+.++.+++.++.++. ++++.+.+.| .....+.|++ +++|++++++++.+..
T Consensus 85 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~ 164 (438)
T TIGR00712 85 SDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHN 164 (438)
T ss_pred hhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHH
Confidence 999999999999999999998887765 3555666666 3446778889 8999999999999999
Q ss_pred HHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHH-HHhhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHHH
Q 047673 149 TGILSANLLNYGTQKIKGGWGWRISLAMAVAPASIL-TIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD 227 (437)
Q Consensus 149 ~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~-~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (437)
+|..+++.+.+...... .+||..|++.++..++. ++..+++||+|+....++. .++..+..++..++++.+...++
T Consensus 165 ~g~~~~~~l~~~~~~~~--~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 241 (438)
T TIGR00712 165 IGGGIPPLLVLLGMAWF--NDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPI-EEYRNDYPDDYNEKAEQELTAKE 241 (438)
T ss_pred hHhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCc-hhcccccccccccccccccchHH
Confidence 99999887766543322 38999999987776654 4455667887753110000 00000000000000000000000
Q ss_pred HHHHhhhhhcc--------------ccchhhhhccccccc--ccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhH
Q 047673 228 LIRQSSVSKNI--------------NHPFKKIIDRKYRPQ--LLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVL 291 (437)
Q Consensus 228 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 291 (437)
........+.. ...... +-+.+... -.+.... +....+..+..+++.++.+++.||+++++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~l~~~~g~s~~~~-~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~ 319 (438)
T TIGR00712 242 IFMQYVLPNKLLWYIAIANVFVYLLRYGVLD-WSPTYLKEVKHFALDKS-SWAYFLYEYAGIPGTLLCGWMSDKVFKGNR 319 (438)
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHHHHHH-hHHHHHHHccCCChhhH-HHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 00000000000 000000 00111111 1134445 677778888999999999999999964432
Q ss_pred HHHhHHHHHH---HHHHHHHHH--HHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHHHH-HHHH
Q 047673 292 FLLGGIQILV---SQVMIGSVM--ATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFT-SLVA 364 (437)
Q Consensus 292 ~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~-~~~~ 364 (437)
...+...... +...+.... ........++..++.. +..........|.+|++.|+++.|+.+..+++++ .++|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp 399 (438)
T TIGR00712 320 GATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAAS 399 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcc
Confidence 2222222211 111111110 1111112222222221 1111112345689999999999999999888875 5789
Q ss_pred HHHHHHHHhcccchh-hHHHHHHHHHHHHhhhccccCC
Q 047673 365 QTVLAMLYHFKAGVF-FFFGGWLIAMTTFVHFFLPETK 401 (437)
Q Consensus 365 ~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 401 (437)
.+.|.+.|+.|+... ....++..+..+...+..+|.|
T Consensus 400 ~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 400 AIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999998886544 3444444455555555555543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-25 Score=206.18 Aligned_cols=345 Identities=16% Similarity=0.171 Sum_probs=210.8
Q ss_pred HHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHH-----HHHHHHHHHHHHhhhhhhhhch
Q 047673 17 LIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTS-----SLYIAGLIASLFASTVTRAFGR 91 (437)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s-----~~~l~~~i~~~~~g~l~dr~Gr 91 (437)
+.+.+|...+++.. +.+.+++++ +.++.+.+.+.+ ..+++..+++++.|+++||+||
T Consensus 3 ~~~~~~~~~~~~~~--~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~ 64 (394)
T TIGR00883 3 AVEWFDFYLYGFAA--VLVFHTFFP----------------PSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGR 64 (394)
T ss_pred chhHHHHHHHHHHH--HHHHHHhcC----------------CCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhh
Confidence 45666766666443 444444421 234455555444 3444456789999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccc--------eeeeee------------cchhhhhhcc-cccccchHHHHHHHHHHH
Q 047673 92 KASILVGGTTFLTSSAIGGAALDIY--------MLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVATG 150 (437)
Q Consensus 92 r~~~~~~~~~~~~~~~~~~~a~~~~--------~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G 150 (437)
|+++..+.++..++.+++++++++. .++++| ....++.|++ +++|++..+..+.+..+|
T Consensus 65 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 144 (394)
T TIGR00883 65 KKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVG 144 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHH
Confidence 9999999999999999999999876 366777 4567899999 999999999999999999
Q ss_pred HHHHHHHHhhhhcc-----CCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHH
Q 047673 151 ILSANLLNYGTQKI-----KGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAEL 225 (437)
Q Consensus 151 ~~~~~~~~~~l~~~-----~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (437)
.++++.++..+... ...++||+.|++.++..++..+.....||+|++..++++ .++..+..++..+++......
T Consensus 145 ~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 223 (394)
T TIGR00883 145 LLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK-HKKKRGPIRETLTKHRKPFLL 223 (394)
T ss_pred HHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc-cccccCCHHHHHHhchHHHHH
Confidence 99999887765431 123689999998887777666666677887754332221 111110111110000000000
Q ss_pred HHHHHHhhhhhccccchhhhhccccc-cc-ccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHH
Q 047673 226 DDLIRQSSVSKNINHPFKKIIDRKYR-PQ-LLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQ 303 (437)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 303 (437)
........ ........... +.+. .. -.+.... +.......+...++.++.+++.||+|||+.+.....+..+..
T Consensus 224 ~~~~~~~~--~~~~~~~~~~~-~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 299 (394)
T TIGR00883 224 GLGLVIAT--TTTFYLITTYL-PTYLTQTLGLSANSA-LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLA 299 (394)
T ss_pred HHHHHHHH--HHHHHHHHHHH-HHHHHHhcCCChhHH-HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 00000000 00000000000 1111 00 1244455 677778888999999999999999999997765554443332
Q ss_pred -HHHHHHH---HHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhcc-c
Q 047673 304 -VMIGSVM---ATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAV-GLLFTSLVAQTVLAMLYHFK-A 376 (437)
Q Consensus 304 -~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g-~ 376 (437)
..+.... ............++.. ...+....+..|.+|++.|+++.++.+.. ..+++.++|.+.|.+.++.+ +
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~ 379 (394)
T TIGR00883 300 VPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDW 379 (394)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcc
Confidence 2222111 1112222222222222 33444567778999999999999985544 56788899999999999887 5
Q ss_pred chhhHHHH
Q 047673 377 GVFFFFGG 384 (437)
Q Consensus 377 ~~~~~~~~ 384 (437)
.......+
T Consensus 380 ~~~~~~~~ 387 (394)
T TIGR00883 380 YAIGYYLA 387 (394)
T ss_pred hhHHHHHH
Confidence 44444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-26 Score=212.38 Aligned_cols=339 Identities=15% Similarity=0.074 Sum_probs=213.3
Q ss_pred HHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHH
Q 047673 15 GGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKAS 94 (437)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~ 94 (437)
+.+...++...++... |.+.+++ |++..+.|++.+++.++..+++++.|+++||+|||++
T Consensus 3 ~~~~~~~~~~~~~~~~--~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 62 (379)
T TIGR00881 3 GYAAYYLVRKNFALAM--PYLVEEI------------------GLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVF 62 (379)
T ss_pred hhhHHHHhHHhhhhhh--HHHHHHh------------------CCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeeh
Confidence 3456666776666554 6777776 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHH-HHHhh
Q 047673 95 ILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSAN-LLNYG 160 (437)
Q Consensus 95 ~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~-~~~~~ 160 (437)
+..+.++.+++.++.+++++++.+++.| ...+++.|++ +++|+++.++.+.+..+|..+++ .++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 142 (379)
T TIGR00881 63 LPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFG 142 (379)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999 5567889999 89999999999999999999999 46655
Q ss_pred hhccCCCcchHHHHHhhHHHHHH-HHHhhccCCCChhHHHhhCCCH---HHHHHHHHHHhCC-ccHHHHHHHHHHHhhhh
Q 047673 161 TQKIKGGWGWRISLAMAVAPASI-LTIGLLFLPETPSSIIQRNNDY---QKAEKIMQIVRGT-ADVQAELDDLIRQSSVS 235 (437)
Q Consensus 161 l~~~~~~~~wr~~f~~~~i~~~~-~~~~~~~l~esp~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 235 (437)
+... .+||+.|++.++..++ .++..++.||+|+....+..+. ++.++..++..++ ...+.............
T Consensus 143 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (379)
T TIGR00881 143 IAEL---YSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLW 219 (379)
T ss_pred HHhc---CCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHH
Confidence 5433 4899999887765555 3445556777654211100000 0000000000000 00000000000000000
Q ss_pred ---------hccccchhhhhccccccc--ccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcC-chhHHH-HhH-HHHHH
Q 047673 236 ---------KNINHPFKKIIDRKYRPQ--LLSESTSLLMSALVTGGIGTVSTILPMILADKLG-RKVLFL-LGG-IQILV 301 (437)
Q Consensus 236 ---------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~-~~~-~~~~~ 301 (437)
......... +.+.+... -.+..+. +.......+..+++.++.+++.||.. +|+... ... ....+
T Consensus 220 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~ 297 (379)
T TIGR00881 220 YISLGYVFVYVVRTGILD-WSPLYLTQEKGFSKEKA-SWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIV 297 (379)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHH-HHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 000000000 00001000 1144555 77788888999999999999999864 333222 111 11122
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHh-hhcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 047673 302 SQVMIGS--VMATQLVLICVYNAGF-TFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGV 378 (437)
Q Consensus 302 ~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 378 (437)
+...... .........+.+..+. ..+..+....+..|.+|++.|+++.|+.+....+++.++|.+.|.+.++.|+..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 377 (379)
T TIGR00881 298 SLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAG 377 (379)
T ss_pred HHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccc
Confidence 2222111 1111122222222222 223333345567899999999999999999999999999999999999887643
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-24 Score=200.89 Aligned_cols=303 Identities=15% Similarity=0.014 Sum_probs=195.8
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cch
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAP 125 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~ 125 (437)
|+++.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+++.| ...
T Consensus 37 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~ 116 (401)
T PRK11043 37 QTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQ 116 (401)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999988 234
Q ss_pred hhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCC
Q 047673 126 ISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNND 204 (437)
Q Consensus 126 ~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~ 204 (437)
+++.|++ ++++++..+.......+|..++|.+++.+.+. .+||+.|++.++..++..+..++++|+++. + +
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~- 188 (401)
T PRK11043 117 ALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH---FGWQAIFATLFAITLLLILPTLRLKPSKKA---R-K- 188 (401)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHcCCCCCc---c-c-
Confidence 5678889 88888899998888899999999999888754 389999998777766665555555554421 1 1
Q ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhh
Q 047673 205 YQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILAD 284 (437)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 284 (437)
.++.++..++..+++............ .........+...+... .-.+.... +.......++.+++.++.+++.|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~---~g~s~~~~-g~~~~~~~~~~~~g~~~~~~l~~ 263 (401)
T PRK11043 189 QSQDALTFKQLLKSKTYLGNVLIFAAC-SAAFFAWLTGSPFILEQ---MGYSPADI-GLSYVPQTIAFLVGGYGCRAALQ 263 (401)
T ss_pred cchHHHHHHHHHcChhHHHHHHHHHHH-HHHHHHHHHHhHHHHHH---cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111222222221111000000000 00000000000001000 11244444 56666667788899999999999
Q ss_pred hcCchhHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHH
Q 047673 285 KLGRKVLFLLGGIQILVSQVMIGSVMA-----TQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLL 358 (437)
Q Consensus 285 ~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~ 358 (437)
|+++|+.........+++.+.+..... ...........+.+. ...+.......+..| +.++++.|+.+..+..
T Consensus 264 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~ 342 (401)
T PRK11043 264 KWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLG 342 (401)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHH
Confidence 999988765555544444333222111 111111111112221 223333334445566 5789999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 047673 359 FTSLVAQTVLAMLYHF 374 (437)
Q Consensus 359 ~~~~~~~~~~~~~~~~ 374 (437)
++..++.+.+.+.+..
T Consensus 343 ~~~~~~~~~g~l~~~~ 358 (401)
T PRK11043 343 LCFLASLLVSALISTP 358 (401)
T ss_pred HHHHHHHHHHHccCCC
Confidence 9999999999887643
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-24 Score=196.59 Aligned_cols=324 Identities=12% Similarity=0.009 Sum_probs=203.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhc-----cccceeeeee---------
Q 047673 57 CKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAA-----LDIYMLILGL--------- 122 (437)
Q Consensus 57 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a-----~~~~~l~~~r--------- 122 (437)
+|+|++|.+++.+++.+++.++.++.|++.||+|.|+++.++.+++++.+++.+++ +|++.+++.|
T Consensus 65 ~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~ 144 (462)
T PRK15034 65 FNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGAN 144 (462)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999987 8999999999
Q ss_pred --cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhh-----cc----------CCCcchHHHHHhhHHHHHHH
Q 047673 123 --NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQ-----KI----------KGGWGWRISLAMAVAPASIL 184 (437)
Q Consensus 123 --~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~-----~~----------~~~~~wr~~f~~~~i~~~~~ 184 (437)
.....+++++ +++||+++++.....++|..+++++...+. .. .+..+||..+++..++.++.
T Consensus 145 f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~ 224 (462)
T PRK15034 145 FASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIA 224 (462)
T ss_pred HHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHH
Confidence 5667789999 899999999997666677766555544322 10 01235888887766665555
Q ss_pred HHh-hccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhcc-ccchh-hhhcccccccccccchHH
Q 047673 185 TIG-LLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNI-NHPFK-KIIDRKYRPQLLSESTSL 261 (437)
Q Consensus 185 ~~~-~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~ 261 (437)
.+. +++.++.|. .+.+ .+ +..+.++... ......-... ...... ...+. .+++. ..+....
T Consensus 225 ~i~~~~~~~~~~~---~~~~-~~---~~~~vlk~~~-~Wllslly~~--tFG~fvg~s~~lp~~~~~-----~~~~~~~- 288 (462)
T PRK15034 225 TIAAWSGMNDIAS---SRAS-IA---DQLPVLQRLH-LWLLSLLYLA--TFGSFIGFSAGFAMLAKT-----QFPDVNI- 288 (462)
T ss_pred HHHHHHhCCCccc---cccC-HH---HHHHHhCCCc-hhHHHHHHHH--HHHHHHHHHHHHHHHHHH-----HcChHHH-
Confidence 444 334444331 1111 11 1112222111 1100000000 000000 00000 01111 1122222
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHH------HHHHHHHHHH--HHhhhccccccc
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMA------TQLVLICVYN--AGFTFLWWPLGW 333 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~~ 333 (437)
.....+..+...+.++++|+++||+|+++++.++++.+.++......... ........+. ...+.+.+++ +
T Consensus 289 l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsv-f 367 (462)
T PRK15034 289 LRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGST-F 367 (462)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHH-H
Confidence 33344556888999999999999999999999888877776644333221 1122222222 2223333333 3
Q ss_pred ccccccCCh---------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cc-hhhHHHHHHHHHH
Q 047673 334 LVPSEIFPL---------------------EIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFK-AG-VFFFFGGWLIAMT 390 (437)
Q Consensus 334 ~~~~~~~p~---------------------~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~-~~~~~~~~~~~~~ 390 (437)
-++.+.+|+ ++-|.+.|+....+.+|+++.|.+++...+..| +. .++.+.+...++.
T Consensus 368 k~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 447 (462)
T PRK15034 368 QMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCV 447 (462)
T ss_pred HhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 344566663 146788999999999999999999999988877 33 4555555555555
Q ss_pred HHhhhcc
Q 047673 391 TFVHFFL 397 (437)
Q Consensus 391 ~~~~~~~ 397 (437)
.+.+.+.
T Consensus 448 ~~~w~~y 454 (462)
T PRK15034 448 LLTWLVY 454 (462)
T ss_pred HHHHHHh
Confidence 5555544
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=197.34 Aligned_cols=323 Identities=16% Similarity=0.071 Sum_probs=190.5
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHh---h-ccccceeeeee-----------
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGG---A-ALDIYMLILGL----------- 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~-a~~~~~l~~~r----------- 122 (437)
|++..+.|++.+.+.++..+++++.|+++||+||||++..+..+.+++++++. . .++++.+++.|
T Consensus 44 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~ 123 (402)
T TIGR00897 44 GLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFA 123 (402)
T ss_pred CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHH
Confidence 88999999999999999999999999999999999999999999998877653 3 35777777888
Q ss_pred -cchhhhhhcc-cccccchHHHHHHHHHHHH-HHHHHHHhhhhccCCCcchHHHHHhhHHHHHHH-HHhhccCCCChhHH
Q 047673 123 -NAPISLRNGT-PKHIGGFNIGFQVCVATGI-LSANLLNYGTQKIKGGWGWRISLAMAVAPASIL-TIGLLFLPETPSSI 198 (437)
Q Consensus 123 -~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~-~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~-~~~~~~l~esp~~~ 198 (437)
....++.+++ +++|++++++.+.+.++|. ++++.+++.+.+. .||+..++.......+. .+..++.++.++..
T Consensus 124 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (402)
T TIGR00897 124 YSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA---FGEMNTLWSALAFVLTGGVIALFSNKDIFTPQ 200 (402)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---cchHHHHHHHHHHHHHHHHHHHhccCCCCCcc
Confidence 2334567888 9999999999999999997 5788888776643 36655544433222222 22233334332100
Q ss_pred HhhCC-CHHHHHHHHHHHhCCccHHHHH-HHHHHHhhhhhccccchhhhhcccccccccccchHHHHHHHHHHHHHHHHh
Q 047673 199 IQRNN-DYQKAEKIMQIVRGTADVQAEL-DDLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVST 276 (437)
Q Consensus 199 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (437)
.++++ +.++..+..+.+.+++...... ........ ......+...+.. ..-.+..+. +.......++..+++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~---~~g~s~~~~-~~~~~~~~~~~~ig~ 274 (402)
T TIGR00897 201 HMQTREKFSELGKAATILFTNPNVLLGGMVRIINTIG--LFGFAVFLPMFVA---ELGFSTSEW-LQIWGTFFFTNIVFN 274 (402)
T ss_pred cccCCcchhhHHHHHHHHHcChhHHHHHHHHHHHHHH--HHHHHHHHHHHHH---HcCCChhHH-HHHHHHHHHHHHHHH
Confidence 00100 0111111111222221111000 00000000 0000011111110 011244455 666677888999999
Q ss_pred hhHHHHhhhcCchhHHH-HhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHH
Q 047673 277 ILPMILADKLGRKVLFL-LGGIQILVSQVMIGSVM-----ATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGK 349 (437)
Q Consensus 277 ~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~ 349 (437)
++.|+++||++||+.+. .+.+...++.+.+.... ............+... ...+. .....|..| ++|+++.
T Consensus 275 ~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~ 352 (402)
T TIGR00897 275 VIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAM 352 (402)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHH
Confidence 99999999999888653 33333333333332221 1111112222222222 22333 234456545 6899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHH
Q 047673 350 SITVAVGLLFTSLVAQTVLAMLYHFKAG-VFFFFGGWLIAMTT 391 (437)
Q Consensus 350 g~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~ 391 (437)
|+.+....+++.++|++.+.+.+..|+. .+++.+++..+..+
T Consensus 353 g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~ 395 (402)
T TIGR00897 353 SVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAF 395 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988854 44444444333333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-24 Score=199.56 Aligned_cols=336 Identities=11% Similarity=0.007 Sum_probs=219.9
Q ss_pred HHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 047673 9 CIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRA 88 (437)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr 88 (437)
.+++++..+..|++.+..++.. |.++++| |+++.+.|++.+.+.+++.+++++.|++.||
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~--~~~~~~~------------------~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r 64 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMV--PQFQQAF------------------TLTAFQAALVQSAFYGGYFIMAIPAAIFMKK 64 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788899888888775 7888877 8899999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHhh---ccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHHHHH
Q 047673 89 FGRKASILVGGTTFLTSSAIGGA---ALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVATGIL 152 (437)
Q Consensus 89 ~Grr~~~~~~~~~~~~~~~~~~~---a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~ 152 (437)
+|||+++..+.++++++.+++.. .++++.+++.| ....++.+.. +++|++..++.+...++|..
T Consensus 65 ~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~ 144 (410)
T TIGR00885 65 LSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSI 144 (410)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988654 46888888888 4457788888 88899999999999999999
Q ss_pred HHHHHHhhhhccC-----------------------CCcchHHHHHhhHHHHHHHHHhh--ccCCCChhHHHhhCCCHHH
Q 047673 153 SANLLNYGTQKIK-----------------------GGWGWRISLAMAVAPASILTIGL--LFLPETPSSIIQRNNDYQK 207 (437)
Q Consensus 153 ~~~~~~~~l~~~~-----------------------~~~~wr~~f~~~~i~~~~~~~~~--~~l~esp~~~~~~~~~~~~ 207 (437)
+++.++..+.... +..+||++|++.+++.++..+.. ...||.++. +++ .++
T Consensus 145 ~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~---~~~-~~~ 220 (410)
T TIGR00885 145 IGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHS---DAK-QIS 220 (410)
T ss_pred HHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---ccc-ccc
Confidence 9999988764321 01369999988776555544333 235543210 011 111
Q ss_pred HHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcC
Q 047673 208 AEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLG 287 (437)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 287 (437)
..+..++..+++...............+.. ..++...+..+.. .-.+...+ ............+|+++++++.||++
T Consensus 221 ~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~-~~s~l~~y~~~~~-~~~~~~~a-~~~~~~~~~~~~vGR~~~~~l~~r~~ 297 (410)
T TIGR00885 221 FSASLSRLARIRHYREGVIAQFFYVGVQIM-CWTFIIQYAVRLI-PGMTAGFA-ANYNIGAMVIFFISRFIGTWLISYLA 297 (410)
T ss_pred chhhHHHHHhChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcc-CCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 111111222222111111000000000000 0011111100000 00112223 33455555778999999999999999
Q ss_pred chhHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 047673 288 RKVLFLLGGIQILVSQVMIGSVMATQ-LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQT 366 (437)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 366 (437)
+|+.+.+..++..+..++........ ...+.+...+.+ ...|..+....+..+++.+..+.++.... +|+.+.|++
T Consensus 298 ~~~~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s-~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l 374 (410)
T TIGR00885 298 AHKVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMS-LMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPL 374 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHH
Confidence 99998888887777777666644432 233333333333 33466677777888877655555555544 999999999
Q ss_pred HHHHHHhc
Q 047673 367 VLAMLYHF 374 (437)
Q Consensus 367 ~~~~~~~~ 374 (437)
.|.+.|..
T Consensus 375 ~G~~~d~~ 382 (410)
T TIGR00885 375 QGFIIDMK 382 (410)
T ss_pred HHHHHHHh
Confidence 99999954
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=206.13 Aligned_cols=360 Identities=12% Similarity=0.017 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 047673 9 CIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRA 88 (437)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr 88 (437)
.....+.++..|......++.. |.+.++. |.+..++|.+ +.....+ ++.+++|+++||
T Consensus 14 ~~~~~~l~~~~gl~~~~~~~~l--~~~l~~~------------------g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr 71 (491)
T PRK11010 14 SAILLILGFASGLPLALTSGTL--QAWMTVE------------------NIDLKTIGFF-SLVGQAY-VFKFLWSPLMDR 71 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHhC------------------CCCHHHHHHH-HHHHHHH-HHHHHHHHHHHc
Confidence 3344444556666666665443 5555554 7889999997 3444443 689999999999
Q ss_pred h-----chhHH-HHHHHHHHHHHHHHHhhc---cccceeeeee------------cchhhhhhcc-cccccchHHHHHHH
Q 047673 89 F-----GRKAS-ILVGGTTFLTSSAIGGAA---LDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVC 146 (437)
Q Consensus 89 ~-----Grr~~-~~~~~~~~~~~~~~~~~a---~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~ 146 (437)
+ ||||. +..+.+..+++..++++. ++++.+.+.+ ...++..|++ +++|+++.++...+
T Consensus 72 ~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g 151 (491)
T PRK11010 72 YTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLG 151 (491)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHH
Confidence 9 99985 667777777777777665 3566666666 5667889999 99999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHH-HHHHHHHHhCCccHHHHH
Q 047673 147 VATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQK-AEKIMQIVRGTADVQAEL 225 (437)
Q Consensus 147 ~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 225 (437)
..+|.++++.++..+.+.. +|||..|++.++..++..+..+++||+++...++++ .++ ..+..++..+++......
T Consensus 152 ~~lG~llg~~l~~~l~~~~--~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~l 228 (491)
T PRK11010 152 YRLAMLVSGGLALWLADRY--LGWQGMYWLMAALLIPCIIATLLAPEPTDTIPVPKT-LEQAVVAPLRDFFGRNNAWLIL 228 (491)
T ss_pred HHHHHHHHHHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc-hhhhHHHHHHHHHcCcCHHHHH
Confidence 9999999999988887521 489999999887777666655567887532111111 111 111222222222111110
Q ss_pred HHHHHHhhhhhccccchhhhhccccc-c-cccccchHHHHHH-HHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHH
Q 047673 226 DDLIRQSSVSKNINHPFKKIIDRKYR-P-QLLSESTSLLMSA-LVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVS 302 (437)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 302 (437)
....... ... .....+...+. . .-.+..+. +... ....++.+++.+++|+++||+|+|+.+..+.++.++.
T Consensus 229 l~~~l~~-~~~----~~~~~~~~~~l~~~~G~s~~~~-g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~ 302 (491)
T PRK11010 229 LLIVLYK-LGD----AFAMSLTTTFLIRGVGFDAGEV-GLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVS 302 (491)
T ss_pred HHHHHHH-HHH----HHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 0000000 000 00000011111 0 11245555 5555 4556789999999999999999988777666655554
Q ss_pred HHHHHH---HH-HHHHHH--HHHHHHHhhhcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047673 303 QVMIGS---VM-ATQLVL--ICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKA 376 (437)
Q Consensus 303 ~~~~~~---~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 376 (437)
.+.+.. .. +..... ..+.....+.+... ...+..+..+++.+++..|+.+....++..+++++.|.+.|..|+
T Consensus 303 ~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~-~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~ 381 (491)
T PRK11010 303 NAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAA-FVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGW 381 (491)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 433321 11 111111 11111112222222 245556788888899999999999999999999999999999898
Q ss_pred chhhHHHHHHHHHHHHhhhccccC
Q 047673 377 GVFFFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~ 400 (437)
..++.+..++.+.+++.....+++
T Consensus 382 ~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 382 PTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 776666666666666655555543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=195.60 Aligned_cols=297 Identities=13% Similarity=0.066 Sum_probs=188.7
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cch
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAP 125 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~ 125 (437)
|+++.+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++.++++++.+++.| ...
T Consensus 22 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 101 (377)
T PRK11102 22 GVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVIN 101 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999989 456
Q ss_pred hhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHH-HhhccCCCChhHHHhhCC
Q 047673 126 ISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILT-IGLLFLPETPSSIIQRNN 203 (437)
Q Consensus 126 ~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~-~~~~~l~esp~~~~~~~~ 203 (437)
+++.|++ +++|++++++.+.+..+|..+++.+++.+.+. ++||+.|++.++..++.. +..+++||+++...+++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (377)
T PRK11102 102 ALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW---FSWHAIFWVLALAAILAAALVFFFIPETLPKERRQPF 178 (377)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCCC
Confidence 7789999 89999999999999999999999999888754 389999988776665544 344567776431111110
Q ss_pred CHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhcccccc-cccccchHHHHHHHHHHHHHHHHhhhHHHH
Q 047673 204 DYQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRP-QLLSESTSLLMSALVTGGIGTVSTILPMIL 282 (437)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 282 (437)
+.++..+..++..+++......... ...... ...+.......+.. .-.+..+. +.......+..+++.++.+++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l 253 (377)
T PRK11102 179 HLRTTIRNFASLFRHKRVLGYMLAS--GFSFAG--MFSFLTAGPFVYIELNGVSPQNF-GYYFALNIVFLFVMTIINSRF 253 (377)
T ss_pred ChHHHHHHHHHHHcChHHHHHHHHH--HHHHHH--HHHHHHcCHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 0111111111222221111000000 000000 00000000000000 01244555 778888889999999999999
Q ss_pred hhhcCchhHHHHhHHHHHHHHHHHHHHH--H--HHHH--HHHHHHHHhhhcccccccccccccCChhhhhhHHHHHHHHH
Q 047673 283 ADKLGRKVLFLLGGIQILVSQVMIGSVM--A--TQLV--LICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVG 356 (437)
Q Consensus 283 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 356 (437)
.||+|+|+.+..+..+..+..+.+.... . .... ....+..+.+ ...+.......|..| +.++++.++.+...
T Consensus 254 ~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~ 331 (377)
T PRK11102 254 VRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVS-MISSNAMAVILDEFP-HMAGTASSLAGTLR 331 (377)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HhhHHHHHHHhcccc-ccchHHHHHHHHHH
Confidence 9999999988887766544333322221 1 1111 1111111111 122222334456666 78899999887765
Q ss_pred HH-HHHHHH
Q 047673 357 LL-FTSLVA 364 (437)
Q Consensus 357 ~~-~~~~~~ 364 (437)
.. +..+++
T Consensus 332 ~~~g~~~g~ 340 (377)
T PRK11102 332 FGIGAIVGA 340 (377)
T ss_pred HHHHHHHHH
Confidence 53 333333
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=197.57 Aligned_cols=342 Identities=9% Similarity=0.007 Sum_probs=216.6
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhh
Q 047673 5 VVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFAST 84 (437)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~ 84 (437)
.+..+..+.+..+..+++....+... |.+++++ |+++.+.|++.+.+.+++.+++++.|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~--p~i~~~~------------------~~s~~~~gl~~~~~~~g~~i~~~~~g~ 83 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILL--PQFQQAF------------------TLTNFQAGLIQSAFYFGYFIIPIPAGI 83 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666788888887777554 7777777 889999999999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHHHHHH---hhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHH
Q 047673 85 VTRAFGRKASILVGGTTFLTSSAIG---GAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVA 148 (437)
Q Consensus 85 l~dr~Grr~~~~~~~~~~~~~~~~~---~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~ 148 (437)
+.||+|||+++..+.++++++++++ .++++++.++++| ....++.|+. +++|++.++..+..+.
T Consensus 84 l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~ 163 (438)
T PRK10133 84 LMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163 (438)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 9999999999999999999999885 4689999999999 5567777877 6666668999999999
Q ss_pred HHHHHHHHHHhhhhc-cC----------------CC------cchHHHHHh-hHHHHHHHHH-hhccCCCChhHHHhhCC
Q 047673 149 TGILSANLLNYGTQK-IK----------------GG------WGWRISLAM-AVAPASILTI-GLLFLPETPSSIIQRNN 203 (437)
Q Consensus 149 ~G~~~~~~~~~~l~~-~~----------------~~------~~wr~~f~~-~~i~~~~~~~-~~~~l~esp~~~~~~~~ 203 (437)
+|..+++.++..+.. .. .. .+||++|+. .++..++.++ ....+||.+....++++
T Consensus 164 ~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~ 243 (438)
T PRK10133 164 FGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK 243 (438)
T ss_pred HHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccc
Confidence 999999998875431 10 00 256777754 3333333332 23445653321000000
Q ss_pred CHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhcccccc--cccccchHHHHHHHHHHHHHHHHhhhHHH
Q 047673 204 DYQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRP--QLLSESTSLLMSALVTGGIGTVSTILPMI 281 (437)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 281 (437)
..+..+..+++.+++...............+. ....+.. ..... .-.+.... +.......++.++++++.++
T Consensus 244 -~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~-~~~~~~~---~~l~~~~~g~s~~~a-g~~~~~~~~~~~vG~~~~g~ 317 (438)
T PRK10133 244 -QGSFSASLSRLARIRHWRWAVLAQFCYVGAQT-ACWSYLI---RYAVEEIPGMTAGFA-ANYLTGTMVCFFIGRFTGTW 317 (438)
T ss_pred -ccchhhhHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHH---HHHhhhcCCCCHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 00001111122122111110000000000000 0001111 11011 12356666 78889999999999999999
Q ss_pred HhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccccccccccccCChhhhhhHHHHHHHHHHHHH
Q 047673 282 LADKLGRKVLFLLGGIQILVSQVMIGSVMATQ-LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFT 360 (437)
Q Consensus 282 l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~ 360 (437)
+.||+++|+++..+..+..+.+++........ ...+.+...+.+ ...|..+....+..|++ .+++.++.. ...+++
T Consensus 318 l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~-~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~ 394 (438)
T PRK10133 318 LISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMS-IQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGG 394 (438)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HHHHHHHHHHHcccchh-hccchhHHh-HHhccc
Confidence 99999999988887777665555444332211 222233333333 33444455556777654 577777775 455788
Q ss_pred HHHHHHHHHHHHhcc
Q 047673 361 SLVAQTVLAMLYHFK 375 (437)
Q Consensus 361 ~~~~~~~~~~~~~~g 375 (437)
.++|++.|.+.|..|
T Consensus 395 ~~~~~i~G~l~~~~g 409 (438)
T PRK10133 395 GIVTPVMGFVSDAAG 409 (438)
T ss_pred hHHHHHHHHHHHhcc
Confidence 999999999998876
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=197.26 Aligned_cols=302 Identities=13% Similarity=0.068 Sum_probs=194.9
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cch
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAP 125 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~ 125 (437)
|.+..+.++..+.+.++..+++++.|+++||+|||+.+..+.++..++.+++..++|++.+++.| ...
T Consensus 34 ~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 113 (392)
T PRK10473 34 NASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAF 113 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999888888 455
Q ss_pred hhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHH-hhccCCCChhHHHhhCC
Q 047673 126 ISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTI-GLLFLPETPSSIIQRNN 203 (437)
Q Consensus 126 ~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~-~~~~l~esp~~~~~~~~ 203 (437)
.++.|++ +++|+++.++.+....+|..++|.+++.+.+. .+||+.|++.++..++..+ ..+++||+++.. +++
T Consensus 114 ~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~---~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~ 188 (392)
T PRK10473 114 AILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK---FPWQSLFYTMAAMGILVLLLSLFILKETRPAR--APA 188 (392)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---cChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc--cCC
Confidence 6788999 99999999999999999999999998887643 3899999887766555443 345567764321 111
Q ss_pred CHHHHHHHHHHHhCCccHHH-HHHHHHHHhhhhhccccchhhhhccccccc--ccccchHHHHHHHHHHHHHHHHhhhHH
Q 047673 204 DYQKAEKIMQIVRGTADVQA-ELDDLIRQSSVSKNINHPFKKIIDRKYRPQ--LLSESTSLLMSALVTGGIGTVSTILPM 280 (437)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g 280 (437)
.++..+..++..+++.... .......... ...+... .+.+... -.+.... +......++..+++.++.+
T Consensus 189 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~~~ 260 (392)
T PRK10473 189 -ASSKPRENSESLLNRFFLSRLVITTLSVTV-----ILTFVNT-SPVLLMEQMGFSRGEY-AIIMALTAGVSMTVSFSTP 260 (392)
T ss_pred -ccchHHHHHHHHhCHHHHHHHHHHHHHHHH-----HHHHHHh-CHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 1111111111111111000 0000000000 0000000 0000000 1134445 6777788889999999999
Q ss_pred HHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhcccccccccccccCChhhhhhHHHHHHHHHHH
Q 047673 281 ILADKLGRKVLFLLGGIQILVSQVMIGSVMATQL--VLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLL 358 (437)
Q Consensus 281 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~ 358 (437)
++.||+|+|+.+..+..+..++.+.+........ ....+...+++.+.... ...+..|.+.|+ |.......+
T Consensus 261 ~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~---~~~~~~~~~~~~---g~~~~~~~~ 334 (392)
T PRK10473 261 FALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGVA---MSQALGPFSLRA---GVASSTLGI 334 (392)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHhccCcccc---cHHHHHHHH
Confidence 9999999999998888877777766665544332 22222223333222221 223444544443 333444456
Q ss_pred HHHHHHHHHHHHHHhcccch
Q 047673 359 FTSLVAQTVLAMLYHFKAGV 378 (437)
Q Consensus 359 ~~~~~~~~~~~~~~~~g~~~ 378 (437)
+..+++.+.+.+.+..++..
T Consensus 335 ~~~~g~~~~~~l~~~~g~~~ 354 (392)
T PRK10473 335 AQVCGSSLWIWLAAVLGISA 354 (392)
T ss_pred HHHHHHHHHHHHHHHhccch
Confidence 66667777777777776543
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9e-23 Score=191.53 Aligned_cols=344 Identities=10% Similarity=0.030 Sum_probs=207.9
Q ss_pred HHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 047673 11 VAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFG 90 (437)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G 90 (437)
.+.+..+...++.....+.. |.+.++| +.+..+.++..+++.++++++++++|+++||+|
T Consensus 20 ~~~~~~~~~~~~~~~~~p~l--~~i~~~~------------------~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G 79 (413)
T PRK15403 20 ALILYDFAAYLTTDLIQPGI--INVVRDF------------------NADVSLAPASVSLYLAGGMALQWLLGPLSDRIG 79 (413)
T ss_pred HHHHHHHHHHHHHHhhccCH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcC
Confidence 34555566666677776554 7777777 889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHH
Q 047673 91 RKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLL 157 (437)
Q Consensus 91 rr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~ 157 (437)
||+++..+.++++++++++++++|++.++++| ....++.|++ +++|++++++...+..+|..+||.+
T Consensus 80 rr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 159 (413)
T PRK15403 80 RRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLS 159 (413)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 3345677888 8889999999999999999999999
Q ss_pred HhhhhccCCCcchHHHHHhhHHHHHHHHHh-hccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhh
Q 047673 158 NYGTQKIKGGWGWRISLAMAVAPASILTIG-LLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDDLIRQSSVSK 236 (437)
Q Consensus 158 ~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~-~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (437)
++.+.+. .|||+.|++.++..++..+. ++.+||+++.. +++.+.++..+..++..+++............ ..
T Consensus 160 g~~l~~~---~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~-~~-- 232 (413)
T PRK15403 160 GAALMHF---VHWKVLFAIIAVMGLIAFVGLLLAMPETVKRG-AVPFSAKSVLRDFRNVFRNRLFLTGAATLSLS-YI-- 232 (413)
T ss_pred HHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCCcccc-CCCCChHHHHHHHHHHHcCHHHHHHHHHHHHH-HH--
Confidence 9887754 38999999988776665544 45678875311 01100111111122222221111000000000 00
Q ss_pred ccccchhhhhcccccccc--cccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHH----H
Q 047673 237 NINHPFKKIIDRKYRPQL--LSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSV----M 310 (437)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~----~ 310 (437)
....+.. +.+.+.... .+..+. +........+.+++..+.+++.++..+++.......+..++..++... .
T Consensus 233 -~~~~~~~-~~P~~l~~~~g~s~~~~-gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~ 309 (413)
T PRK15403 233 -PMMSWVA-VSPVILIDAGGMTTSQF-AWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWP 309 (413)
T ss_pred -HHHHHHH-hChHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 0000000 001111111 244445 666666677777877787777655444443322222222222222111 1
Q ss_pred HHH---HHHHHHHHHHhhhcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Q 047673 311 ATQ---LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWL 386 (437)
Q Consensus 311 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 386 (437)
... .....++..+.+...... ... +..-....+|++.++.+.....+...++...+++.+......+....+++
T Consensus 310 ~~~~~~~~~~~l~~~G~~~~~p~~-~~~-al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 386 (413)
T PRK15403 310 HVWLWSVLGTSLYAFGIGLIFPTL-FRF-TLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVA 386 (413)
T ss_pred ccHHHHHHHHHHHHHHHHHHhHHH-HHH-HhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 111 122222223322222222 211 11111223688999999998888888888888777664444444444333
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=201.40 Aligned_cols=302 Identities=17% Similarity=0.230 Sum_probs=198.4
Q ss_pred CcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------
Q 047673 55 NYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------ 122 (437)
Q Consensus 55 ~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------ 122 (437)
+++|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..+++|++.++++|
T Consensus 25 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 104 (352)
T PF07690_consen 25 EELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSP 104 (352)
T ss_dssp CCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccc
Confidence 34488999999999999999999999999999999999999999999999977777778888888888
Q ss_pred cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHh-hccCCCChhHHHh
Q 047673 123 NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIG-LLFLPETPSSIIQ 200 (437)
Q Consensus 123 ~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~-~~~l~esp~~~~~ 200 (437)
....++.|++ +++|++++++...+..+|.++++.+++.+.+.. +||+.|++.++..++..++ ..+++++|+....
T Consensus 105 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~---~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 181 (352)
T PF07690_consen 105 ASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF---GWRWAFLISAILSLIAAILFILFLPEPPPPRER 181 (352)
T ss_dssp HHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC---HHCCHHHHHHHHHHHHHHHHHCCC---STTTT-
T ss_pred cccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc---ccccccccccchhhhhhhhHhhhhhhccccccc
Confidence 6778889999 889999999999999999999999999887443 7999999988877776553 3444444322111
Q ss_pred hCCCHHH--HHHH----HHHHhCCccHHHHHHHHHHHhhhhhccccchhhhh-cccccccccc-cchHHHHHHHHHHHHH
Q 047673 201 RNNDYQK--AEKI----MQIVRGTADVQAELDDLIRQSSVSKNINHPFKKII-DRKYRPQLLS-ESTSLLMSALVTGGIG 272 (437)
Q Consensus 201 ~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~ 272 (437)
+.+++++ .++. .+...+++............. ........+...+ .... -.+ ..+. +.......+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~---~~~~~~~~-~~~~~~~~~~~ 256 (352)
T PF07690_consen 182 ESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFF-FVFSGFSFFLPLYLQEVL---GFSGPSQA-GLLFSIFGIVG 256 (352)
T ss_dssp -SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHH-HHHHHHHHHHHHHCCHHH---HCCTHHHH-HHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhHHH-HHHHHhhcccchhhhhcc---CCCHHHHH-HHHHHHHHHHH
Confidence 1110110 1100 011111000000000000000 0000000011110 0000 013 3455 67788888899
Q ss_pred HHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhh-cccccccccccccCChhhhhhH
Q 047673 273 TVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMAT---QLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAG 348 (437)
Q Consensus 273 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~ 348 (437)
.++.++.+++.||+++++..........+..+.+...... ..........+++. ...+....+..|..|++.|+++
T Consensus 257 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 336 (352)
T PF07690_consen 257 IIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTA 336 (352)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999999877776666666665555443332 22222222223232 2355556777899999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 047673 349 KSITVAVGLLFTSLVA 364 (437)
Q Consensus 349 ~g~~~~~~~~~~~~~~ 364 (437)
.|+.+...++++.++|
T Consensus 337 ~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 337 FGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC
Confidence 9999999999998876
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=195.02 Aligned_cols=314 Identities=9% Similarity=-0.011 Sum_probs=205.2
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cch
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAP 125 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~ 125 (437)
|++..+.|++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++.+++++++.++++| ...
T Consensus 39 g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 118 (395)
T PRK10054 39 SLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLK 118 (395)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999998888877 345
Q ss_pred hhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHh-hccCCCChhHHHhhCC
Q 047673 126 ISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIG-LLFLPETPSSIIQRNN 203 (437)
Q Consensus 126 ~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~-~~~l~esp~~~~~~~~ 203 (437)
.+..|.. +++|+++.++.....++|.+++|.+++.+.. .+|+..|++.++..++..+. .+++||+++.. +++
T Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~----~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~--~~~ 192 (395)
T PRK10054 119 AWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM----QSINLPFWLAAICSAFPLVFIQIWVQRSEKAI--ATE 192 (395)
T ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCcHHHHHHHHHHHHHHHHHHHHhcccccc--ccc
Confidence 5668888 8899999999999999999999999998764 37999999877766665433 34455543210 111
Q ss_pred CHHHHHHHHHHHhCCccHH-HHHHHHHHHhhhhhccccchhhhhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHH
Q 047673 204 DYQKAEKIMQIVRGTADVQ-AELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMIL 282 (437)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 282 (437)
.++..+ .++..+++... .............. ...+...+.......-.+.... +.......+......+..+++
T Consensus 193 -~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~g~~ 267 (395)
T PRK10054 193 -TGSVWS-PSVLLQDKALLWFTCSGFLASFVSGA--FASCISQYVMVVADSDFAEKVV-AVVLPVNAAMVVSLQYSVGRR 267 (395)
T ss_pred -hhhhhh-hhhhccCceehHHHHHHHHHHHHHHH--hhhhHHHHHHHhcccchHHHHH-HHHHHhhhhheeeehhHHHHH
Confidence 111111 11111111110 00000000000000 0000011100000111122233 455555556666667788999
Q ss_pred hhhcCchhHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHHHH
Q 047673 283 ADKLGRKVLFLLGGIQILVSQVMIGSVM-ATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFT 360 (437)
Q Consensus 283 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~ 360 (437)
.||.++|+.+..+..+..++...+.... +.....+.....+.+. ...|.....+.+..|++.|++..+..+ ..++|.
T Consensus 268 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~ 346 (395)
T PRK10054 268 LNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGA 346 (395)
T ss_pred HccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHH
Confidence 9999999998888877777766665432 2222222233333332 223454566778889999999988654 677899
Q ss_pred HHHHHHHHHHHHhcccchhhHHH
Q 047673 361 SLVAQTVLAMLYHFKAGVFFFFG 383 (437)
Q Consensus 361 ~~~~~~~~~~~~~~g~~~~~~~~ 383 (437)
.++|.+.|.+.|+.++..++...
T Consensus 347 ~~Gp~~~G~l~~~~g~~~~~~~~ 369 (395)
T PRK10054 347 AINPLVSGVILTTLPPWSLFVIL 369 (395)
T ss_pred HHHHHHHHHHHHHcChhhHHHHH
Confidence 99999999999999865544443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=193.95 Aligned_cols=319 Identities=8% Similarity=-0.051 Sum_probs=201.3
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cch
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAP 125 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~ 125 (437)
+.++.+.+++.+.+.+++.+.++++|+++||+|||++++.+.++.++++++++++.+. ++.| ...
T Consensus 34 ~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~ 110 (393)
T PRK11195 34 HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKY 110 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 6688899999999999999999999999999999999999999999999888777664 5566 566
Q ss_pred hhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCC
Q 047673 126 ISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNND 204 (437)
Q Consensus 126 ~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~ 204 (437)
+++.|++ +++|++++++.+....+|.++||.+++.+.+. .|+..+.+.+...++..+..+.+||+|+...+++.+
T Consensus 111 a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~----~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 186 (393)
T PRK11195 111 GILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP----HAEAALAVCALIYLLAALFNLFIPRLGARRPGQSWN 186 (393)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCC
Confidence 7889999 99999999999999999999999999998753 377777666555455555556788876321111110
Q ss_pred HHH-HHH---HHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhccccccc--ccccchHHHHHHHHHHHHHHHHhhh
Q 047673 205 YQK-AEK---IMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQ--LLSESTSLLMSALVTGGIGTVSTIL 278 (437)
Q Consensus 205 ~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (437)
..+ .++ ..+.+.+++............... .......+ ..+.+. -.+..+. +......+++.++++++
T Consensus 187 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~lg~s~~~~-G~~~~~~~~g~i~g~~~ 260 (393)
T PRK11195 187 PIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGA----GATLRFLV-LAWAPVALGITLNQP-AYLQAVVAIGIAVGAGA 260 (393)
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH----HHHHHHHH-HHHHHHHcCCChhHH-HHHHHHHHHHHHHHHHH
Confidence 110 000 011111111111000000000000 00000000 000010 1145556 88888999999999999
Q ss_pred HHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccccccccccCChhh-hhhHHHHHHHHH
Q 047673 279 PMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFLW-WPLGWLVPSEIFPLEI-RSAGKSITVAVG 356 (437)
Q Consensus 279 ~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~-r~~~~g~~~~~~ 356 (437)
.+++.||.++++.+..+. ..++....+....+........+..+++.+. .+...+...+..|++. +|++.++.+...
T Consensus 261 ~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~ 339 (393)
T PRK11195 261 AARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNE 339 (393)
T ss_pred HHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHH
Confidence 999999999888777664 3333333333333222222233233333222 2223344456666554 799999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Q 047673 357 LLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTT 391 (437)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 391 (437)
+++..++..+.+.+ +..+-.....+..+..+...
T Consensus 340 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 373 (393)
T PRK11195 340 NLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVAL 373 (393)
T ss_pred HHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence 99999999888854 66675544444444444433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=185.65 Aligned_cols=331 Identities=13% Similarity=0.027 Sum_probs=224.3
Q ss_pred CcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccc---eeeeee---------
Q 047673 55 NYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIY---MLILGL--------- 122 (437)
Q Consensus 55 ~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~---~l~~~r--------- 122 (437)
+|+|+|+.|.+++.++..+...+..++.|.+.||||.|++..++.++..+-++..+++.+++ ++++.+
T Consensus 42 ~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Gas 121 (417)
T COG2223 42 SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGAS 121 (417)
T ss_pred cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccce
Confidence 44599999999999999999999999999999999999999999999999999999986666 888888
Q ss_pred --cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHH-HHhhccCCCChhHH
Q 047673 123 --NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASIL-TIGLLFLPETPSSI 198 (437)
Q Consensus 123 --~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~-~~~~~~l~esp~~~ 198 (437)
+...++++++ |+++|.++|++. ..++|..+...++..+....+...||....+..+..++. +..++...|.|+..
T Consensus 122 Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r 200 (417)
T COG2223 122 FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHR 200 (417)
T ss_pred ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhh
Confidence 7888999999 999999999999 788888888888877765541002998888877666664 44455666666532
Q ss_pred HhhCCCHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhcccccccccccchHHHHHHHHHHHHHHHHhhh
Q 047673 199 IQRNNDYQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTIL 278 (437)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (437)
.+.++ ... ..++...++.+...........-...-.-...+..+++..+ -.+..++ +.......+.+.+.+++
T Consensus 201 ~~~~~-~~~--~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~f---g~~~~~A-g~~a~~f~~~g~l~Rp~ 273 (417)
T COG2223 201 ASVKP-QLP--AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQF---GLSPVTA-GLIAFLFPLIGALARPL 273 (417)
T ss_pred ccccc-cch--hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChhhH-HHHHHHHHHHHHHHHhc
Confidence 22222 110 22222222211110000000000000000000111111111 1155556 78888899999999999
Q ss_pred HHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHH------HH---HHHHHHHHHHhhhcccccccccccccCChhhhhhHH
Q 047673 279 PMILADKLGRKVLFLLGGIQILVSQVMIGSVMA------TQ---LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGK 349 (437)
Q Consensus 279 ~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~ 349 (437)
+|+++||+|.+|++...+..++++......... .. ...........+.+.+.+ +-.+...+|. +.+...
T Consensus 274 GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsv-fk~Ip~if~~-~~G~v~ 351 (417)
T COG2223 274 GGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSV-FKMIPVIFPK-ETGAVT 351 (417)
T ss_pred cchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchh-eeechHHHHh-hhhHHH
Confidence 999999999999999999999888888777651 11 222222223333344444 4555677775 568899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-c-chhhHHHHHHHHHHHHhhh
Q 047673 350 SITVAVGLLFTSLVAQTVLAMLYHFK-A-GVFFFFGGWLIAMTTFVHF 395 (437)
Q Consensus 350 g~~~~~~~~~~~~~~~~~~~~~~~~g-~-~~~~~~~~~~~~~~~~~~~ 395 (437)
|+..+.+.+|++..|..++...+..| + ..++++..+.+++....+.
T Consensus 352 G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 352 GIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA 399 (417)
T ss_pred HHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888 3 3455555554554444443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.1e-23 Score=190.73 Aligned_cols=325 Identities=11% Similarity=0.074 Sum_probs=193.3
Q ss_pred ccCChhHHHHHHHHHHH-HHHHHHHHhhhhhhhhchhHHH-HHHHHHHHHHHHHHhhccccceeeeee------------
Q 047673 57 CKFDSQLLAAFTSSLYI-AGLIASLFASTVTRAFGRKASI-LVGGTTFLTSSAIGGAALDIYMLILGL------------ 122 (437)
Q Consensus 57 ~~~s~~~~g~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~~-~~~~~~~~~~~~~~~~a~~~~~l~~~r------------ 122 (437)
+|++.++.|++.+...+ +..++.+++++ +||+||||.+ ..+.++.+++..+.+++++++.+++.+
T Consensus 46 ~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 124 (393)
T PRK15011 46 VHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANP 124 (393)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 38899999999876655 55666655665 9999999875 456666678888888999998876554
Q ss_pred cchhhhhhcc-cccc--cchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHH-hhccCCCChhHH
Q 047673 123 NAPISLRNGT-PKHI--GGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTI-GLLFLPETPSSI 198 (437)
Q Consensus 123 ~~~~~i~~~~-~~~r--~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~-~~~~l~esp~~~ 198 (437)
....+..|+. +++| +...++.+.+.++|.+++|.+++.+.+.. |||..|++.++..++..+ ..+++||.++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~---gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (393)
T PRK15011 125 QMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF---SFTVMYLSAAVAFIVCGVMVWLFLPSMRKEL 201 (393)
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc---ChHHHHHHHHHHHHHHHHHHHhhcCccCCCC
Confidence 2334445555 4434 23457888899999999999999987643 899999988776655444 455678765311
Q ss_pred HhhCCCHHHHHHHHHHHhCCc-cHHHHHHHHHHHhhhhhccccchhh-hhcccccccccccchHHHHHHHHHHHHHHHHh
Q 047673 199 IQRNNDYQKAEKIMQIVRGTA-DVQAELDDLIRQSSVSKNINHPFKK-IIDRKYRPQLLSESTSLLMSALVTGGIGTVST 276 (437)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (437)
++ .++. .+..++++ ....... ..............+.. .+++. .-.+..+. +.......+..+++.
T Consensus 202 ---~~-~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~l~~~---~~~~~~~~-g~~~~~~~~~~i~~~ 269 (393)
T PRK15011 202 ---PL-ATGT---LEAPRRNRRDTLLLFV-ICTLMWGTNSLYIINMPLFIINE---LHLPEKLA-GVMMGTAAGLEIPTM 269 (393)
T ss_pred ---cc-cccc---ccccccccccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---cCCCHHHH-HHHHHHHHHHHHHHH
Confidence 01 0000 00001110 0000000 00000000000000000 01110 01234444 556666667788899
Q ss_pred hhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhcccccccccccccCChhhhhhHHHHHHH
Q 047673 277 ILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICV--YNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVA 354 (437)
Q Consensus 277 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 354 (437)
++.|+++||++||+.+..+.....+....+....+........ .....+.. .+....+..|..|+ .|+++.++.+.
T Consensus 270 ~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~-~~~~~~~~~~~~p~-~~g~~~~~~~~ 347 (393)
T PRK15011 270 LIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGIL-GGIGMLYFQDLMPG-QAGSATTLYTN 347 (393)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCC-CcchHHHHHHH
Confidence 9999999999999987766555444433332222222111111 11122221 12223445788885 58999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhcccc
Q 047673 355 VGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPE 399 (437)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 399 (437)
..++|..+++.+.|.+.+..++...+....+..+.+.+..+..||
T Consensus 348 ~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 348 TSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999888766655555555555555555543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-23 Score=193.02 Aligned_cols=303 Identities=12% Similarity=0.000 Sum_probs=199.6
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cch
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAP 125 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~ 125 (437)
|++..+.|++.+...++..+.+++.|+++||+|||+++..+.++.+++.+++.++++++.+++.| ...
T Consensus 42 g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~ 121 (400)
T PRK11646 42 GWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRT 121 (400)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999988888 345
Q ss_pred hhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHH-HhhccCCCChhHHHhhCC
Q 047673 126 ISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILT-IGLLFLPETPSSIIQRNN 203 (437)
Q Consensus 126 ~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~-~~~~~l~esp~~~~~~~~ 203 (437)
+++.|++ +++|+++.++......+|..+||.+++.+.+ ++||+.|++.++..++.. +..+++||.+. ++ +
T Consensus 122 ~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~----~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~---~~-~ 193 (400)
T PRK11646 122 ALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ----YDFRLVCATGAVLFVLAAAFNAWLLPAYKL---ST-V 193 (400)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHhCCcccc---cc-c
Confidence 6678999 9999999999999999999999999998872 489999998776655543 33445565321 01 1
Q ss_pred CHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhccccccc-ccccchHHHHHHHHHHHHHHHHhhhHHHH
Q 047673 204 DYQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQ-LLSESTSLLMSALVTGGIGTVSTILPMIL 282 (437)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 282 (437)
.++..+..++..+++................ .... .+-+.+... ..+.... +......++....+....+++
T Consensus 194 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~p~~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~~~~ 266 (400)
T PRK11646 194 -RTPVREGMTRVLRDKRFVTYVLTLTGYYMLA----VQVM-LMLPIMVNDIAGSPSAV-KWMYAIEACLSLTLLYPIARW 266 (400)
T ss_pred -chhhHHHHHHHHcCchHHHHHHHHHHHHHHH----HHHH-HhhhhhHHhhcCCchHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 1111122222222221111000000000000 0000 000111111 1123334 555555555555544444555
Q ss_pred h-hhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHHHH
Q 047673 283 A-DKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFT 360 (437)
Q Consensus 283 ~-d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~ 360 (437)
. ||++.++.+..+..+.+++.+++....+...........+.+. ...+....+..+..|++.|+++.|+.+....++.
T Consensus 267 ~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 346 (400)
T PRK11646 267 SEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGG 346 (400)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHH
Confidence 5 4567666667777777777666655443332222222222222 2334445667799999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 047673 361 SLVAQTVLAMLYHFK 375 (437)
Q Consensus 361 ~~~~~~~~~~~~~~g 375 (437)
.++|.+.|.+.|+.+
T Consensus 347 ~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 347 AIGYIGGGWLFDLGK 361 (400)
T ss_pred HhcccchHHHHHHHh
Confidence 999999999998753
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=188.10 Aligned_cols=305 Identities=14% Similarity=0.076 Sum_probs=193.4
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cch
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAP 125 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~ 125 (437)
|++..+.|++.+++.++..+++++.|+++||+|||+++.++.++..++.+++ .+++++.+++.| ..+
T Consensus 31 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~ 109 (355)
T TIGR00896 31 GMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLP 109 (355)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccch
Confidence 8999999999999999999999999999999999999999999988888887 778888888888 334
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCH
Q 047673 126 ISLRNGTPKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDY 205 (437)
Q Consensus 126 ~~i~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~ 205 (437)
.++.|+++++|+++.++++.+.++|..+++.+++.+.+..+ .+||+.|.+.++..++... .++||.++... +++ .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~-~~w~~~f~~~~~~~~~~~~--~~~~~~~~~~~-~~~-~ 184 (355)
T TIGR00896 110 SLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSG-GHWQQALAWWALPALLALL--AWIPQVRRRVA-ANQ-T 184 (355)
T ss_pred HHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHH--HHhhhhccccC-CCC-C
Confidence 45666667789999999999999999999998887765432 2499988776554443322 22343321100 000 0
Q ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhh
Q 047673 206 QKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADK 285 (437)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 285 (437)
.+ ....++..+++....... ..............+...+-. ..-.+.... +...+...++.++++++.|++.||
T Consensus 185 ~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lp~~~~---~~g~~~~~~-g~~~~~~~~~~i~~~~~~g~l~dr 258 (355)
T TIGR00896 185 TT-RLTPVRIWRSPLAWQVTV-FFGLQSGLYYSLIGWLPAILI---SHGASAATA-GSLLALMQLAQAASALLIPALARR 258 (355)
T ss_pred CC-CCCCchhhcCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HcCCCHHHH-HHHHHHHHHHHHHHHHhHHHHHhh
Confidence 00 000001111111000000 000000000000011111100 111245556 788888999999999999999999
Q ss_pred c-CchhHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhccccccccccc-ccCChhhhhhHHHHHHHHHHHHHHH
Q 047673 286 L-GRKVLFLLGGIQILVSQVMIGSVMATQL-VLICVYNAGFTFLWWPLGWLVPS-EIFPLEIRSAGKSITVAVGLLFTSL 362 (437)
Q Consensus 286 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~r~~~~g~~~~~~~~~~~~ 362 (437)
+ +||+.+..+..+.+++.+.+.+...... ....++..+.+ ...+....... +..+++.++...++.+.+++++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (355)
T TIGR00896 259 VKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWAWALVLGLGQG-GAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAAL 337 (355)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh-hHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 9 5666666777777776665555443322 22222222221 22233233333 3445677889999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 047673 363 VAQTVLAMLYHFK 375 (437)
Q Consensus 363 ~~~~~~~~~~~~g 375 (437)
+|.+.|.+.|+.+
T Consensus 338 gp~~~G~l~~~~g 350 (355)
T TIGR00896 338 GPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.7e-23 Score=192.46 Aligned_cols=336 Identities=13% Similarity=0.018 Sum_probs=192.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHh---hcc----cc-ceeeeee------
Q 047673 57 CKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGG---AAL----DI-YMLILGL------ 122 (437)
Q Consensus 57 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~a~----~~-~~l~~~r------ 122 (437)
+|+++.+.|++.+++.++..++++++|+++||+|||+++.++..+.+++..... .++ +. ...++++
T Consensus 41 ~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (420)
T PRK09528 41 NGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFG 120 (420)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 389999999999999999999999999999999999999886666554433211 111 11 1111222
Q ss_pred --cchhhhhhcc---cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccC-CCChh
Q 047673 123 --NAPISLRNGT---PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFL-PETPS 196 (437)
Q Consensus 123 --~~~~~i~~~~---~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l-~esp~ 196 (437)
.....+.++. ++++++..+......++|..+++.+++.+.+. +|+.+|++.++..++..+..+++ +|.++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 196 (420)
T PRK09528 121 FLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNI----NPQINFWLGSGSALILLVLLFFAKPDAPS 196 (420)
T ss_pred hccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhc----CchHhHHHHHHHHHHHHHHHhcccccccc
Confidence 1111222332 35567788888888999999999999988642 79999998887766655555443 44332
Q ss_pred HHHhhCCCHH-H---HHHHHHHHhCCccHHH-HHHHHHHHhhhhhccccchhhhhcccccccccccchHHHHHHHHHHHH
Q 047673 197 SIIQRNNDYQ-K---AEKIMQIVRGTADVQA-ELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGI 271 (437)
Q Consensus 197 ~~~~~~~~~~-~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (437)
....++++.+ + ..+...+..+++.... .............. ...+...+.........+.... +.......+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~ 274 (420)
T PRK09528 197 TAKVANALGANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVF-DQQFPNFFASFFATPEQGTRVF-GYLNSFQVFL 274 (420)
T ss_pred hhhhccchhcccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHH-HHHHHHHHHHHHhccCcchHHH-HHHHHHHHHH
Confidence 1100000000 0 0000001111110000 00000000000000 0000000000000001122333 6777777788
Q ss_pred HHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccCChhhhhhHHH
Q 047673 272 GTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFL-WWPLGWLVPSEIFPLEIRSAGKS 350 (437)
Q Consensus 272 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~g 350 (437)
..++.++.|++.||+|+|+.+..+..+..+..+++.+..+...........+...+ ..+....+..|.+|++.+++..+
T Consensus 275 ~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 354 (420)
T PRK09528 275 EALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYL 354 (420)
T ss_pred HHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeee
Confidence 88999999999999999999888888888777776655443322222222222221 12223456678889999988876
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHHHHhhhccc
Q 047673 351 I-TVAVGLLFTSLVAQTVLAMLYHFKAGVFFF-FGGWLIAMTTFVHFFLP 398 (437)
Q Consensus 351 ~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~ 398 (437)
. .+....+|..+++.+.|.+.|..|+...+. .+++..+..++.....+
T Consensus 355 ~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 355 VGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 5 566788999999999999999888665444 44444444444444333
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=189.11 Aligned_cols=331 Identities=11% Similarity=0.055 Sum_probs=198.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhch-hHHHHHHHHHHHHHHHHHhhccccceeeeee------------c
Q 047673 57 CKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGR-KASILVGGTTFLTSSAIGGAALDIYMLILGL------------N 123 (437)
Q Consensus 57 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~ 123 (437)
+|++..|+|++.+++.++..++++++|.++||+|| |+++.++.++..++..+..+.++++.+++.| .
T Consensus 33 ~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 112 (418)
T TIGR00889 33 LHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIAL 112 (418)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHH
Confidence 38999999999999999999999999999999965 7788888888888888888889988888777 0
Q ss_pred c----hhhhh----hcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCC
Q 047673 124 A----PISLR----NGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPET 194 (437)
Q Consensus 124 ~----~~~i~----~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~es 194 (437)
. ..+.. |.. ...|.+..| .+|.++++.+++.+... ..|+. |++.++..++..+..+++||+
T Consensus 113 ~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~---~~~~~-f~~~~~~~~~~~~~~~~~~e~ 182 (418)
T TIGR00889 113 TNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIE---LSNIQ-LYITAGSSALLGVFALTLPDI 182 (418)
T ss_pred HHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhccc---chhHH-HHHHHHHHHHHHHHHhcCCCC
Confidence 1 11111 333 344555555 36778888887766321 24554 445554444544555678887
Q ss_pred hhHHHhhCCCHHHHH-HHHHHHhCCccHH-HHHHHHHHHhhhhhccccchhh-hhccccc-ccc---cccchHHHHHHHH
Q 047673 195 PSSIIQRNNDYQKAE-KIMQIVRGTADVQ-AELDDLIRQSSVSKNINHPFKK-IIDRKYR-PQL---LSESTSLLMSALV 267 (437)
Q Consensus 195 p~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~---~~~~~~~~~~~~~ 267 (437)
|+...+++.+..+.. ...++..+++... .............. ...+.. .+..... ... ...... +.....
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~-g~~~~~ 259 (418)
T TIGR00889 183 PVAKSTAKMSIKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQI--TNIFGNGFLHEFGRNPEFADSFVVKNA-SIWMSL 259 (418)
T ss_pred CCCccccccCHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHH--HHHhHHHHHHHhcccccccchhhhhhH-HHHHHH
Confidence 631111111011100 0011122222100 00000000000000 000000 0000000 000 012344 677788
Q ss_pred HHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHhhh-cccccccccccccCCh
Q 047673 268 TGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMA-T---QLVLICVYNAGFTF-LWWPLGWLVPSEIFPL 342 (437)
Q Consensus 268 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ 342 (437)
..+..+++.++.+++.||+|+|+++..+.++..+....+..... . ..........+.+. ...+....++.|.+|+
T Consensus 260 ~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~ 339 (418)
T TIGR00889 260 SQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPV 339 (418)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 88899999999999999999999999999888887665554221 1 11122222222222 2234445667899999
Q ss_pred hhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhcc------cch-hhHHHHHHHHHHHHhhhccccC
Q 047673 343 EIRSAGKSITV-AVGLLFTSLVAQTVLAMLYHFK------AGV-FFFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 343 ~~r~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g------~~~-~~~~~~~~~~~~~~~~~~~~~~ 400 (437)
+.|+++.|+.+ ....++..++|.+.|.+.++.+ |.. +...+++..+.+++.+++++|+
T Consensus 340 ~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 340 HIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999997 5678899999999999999854 443 4445555555566666666654
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-23 Score=192.61 Aligned_cols=293 Identities=13% Similarity=0.006 Sum_probs=182.3
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhcc-ccceeeeee-----------cch
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAAL-DIYMLILGL-----------NAP 125 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~-~~~~l~~~r-----------~~~ 125 (437)
|+|+.+.+++.+++.+++.+++++.|+++||+|||+.+.++.++..++.+++++++ +++.+++.| ...
T Consensus 33 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 112 (366)
T TIGR00886 33 GLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCM 112 (366)
T ss_pred CCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHH
Confidence 89999999999999999999999999999999999999999999999999999999 999999999 456
Q ss_pred hhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccC-------CCcchHHHH-HhhHH-HHHHHHHhhccCCCCh
Q 047673 126 ISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIK-------GGWGWRISL-AMAVA-PASILTIGLLFLPETP 195 (437)
Q Consensus 126 ~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~-------~~~~wr~~f-~~~~i-~~~~~~~~~~~l~esp 195 (437)
.++.|++ +++|+++.++...+..+|..+++.+++.+.... ...+||+.| +..++ ..+..++...+.+|+|
T Consensus 113 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (366)
T TIGR00886 113 PWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTP 192 (366)
T ss_pred HHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCC
Confidence 7788999 899999999999777788877777766554311 124799998 44343 3333444445566665
Q ss_pred hHHHhhCCCHHHH--H--------HHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhccccccc--ccccchHHHH
Q 047673 196 SSIIQRNNDYQKA--E--------KIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQ--LLSESTSLLM 263 (437)
Q Consensus 196 ~~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 263 (437)
+...++++ .+.. . +...+..+++............... .......+. .+... -.+..+. +.
T Consensus 193 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~g~~~~~~-~~ 265 (366)
T TIGR00886 193 PGKPATGK-LSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGS----FLGVSSIFA-MFFKDQFGLSKVTA-GA 265 (366)
T ss_pred cccccchh-cccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHH----HHHHHHHHH-HHHHHHcCCcHHHH-HH
Confidence 31110000 0000 0 0000000000000000000000000 000000000 01111 1144555 67
Q ss_pred HHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHH----HHHH--HHHHHHHHHhhhccccccccccc
Q 047673 264 SALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVM----ATQL--VLICVYNAGFTFLWWPLGWLVPS 337 (437)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 337 (437)
......+..++++++.+++.||+|+|+.+..+......+..++.... .... ..........+.+. +..+...+
T Consensus 266 ~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~ 344 (366)
T TIGR00886 266 YASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGN-GSTFALVP 344 (366)
T ss_pred HHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcccc-chhhhcch
Confidence 77788889999999999999999998877776666655555444322 1211 12222222222222 33455667
Q ss_pred ccCChhhhhhHHHHHHHHHHHH
Q 047673 338 EIFPLEIRSAGKSITVAVGLLF 359 (437)
Q Consensus 338 ~~~p~~~r~~~~g~~~~~~~~~ 359 (437)
+..| +.+++++|+.+..+++|
T Consensus 345 ~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 345 HIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred hhch-hhcccHHHHHHHhccCC
Confidence 7777 68899999998887764
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-22 Score=187.18 Aligned_cols=324 Identities=13% Similarity=0.061 Sum_probs=200.1
Q ss_pred HHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHH
Q 047673 16 GLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASI 95 (437)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~ 95 (437)
.++..+......+.. |.+.+++ |+++.+.+++.+++.++..++++++|+++||+|||+.+
T Consensus 17 ~~~~~~~~~~~~p~~--~~i~~~~------------------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~ 76 (394)
T PRK11652 17 VAVGQMAQTIYVPAI--ADMARDL------------------NVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVI 76 (394)
T ss_pred HHHHHHHHHHHhccH--HHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH
Confidence 334444445555443 6777776 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhh
Q 047673 96 LVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQ 162 (437)
Q Consensus 96 ~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~ 162 (437)
..+.++..++.+++.++++++.+++.| ....+..|.+ +++++++.+....+..+|..++|.+++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 156 (394)
T PRK11652 77 LVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT 156 (394)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 2234567878 888999999999999999999999998877
Q ss_pred ccCCCcchHHHHHhhHHHHHHH-HHhhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccc
Q 047673 163 KIKGGWGWRISLAMAVAPASIL-TIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHP 241 (437)
Q Consensus 163 ~~~~~~~wr~~f~~~~i~~~~~-~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (437)
+. .+||+.|++.++..++. .+..+++||+++. +++ +++..+..++..+++......................
T Consensus 157 ~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (394)
T PRK11652 157 TL---FGWRACYLFLLLLGAGVTFSMARWMPETRPA---DAR-RTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEAC 229 (394)
T ss_pred hc---cChHHHHHHHHHHHHHHHHHHHHhCCccCcc---ccc-hhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHh
Confidence 54 38999999877655543 3345567886532 111 1111222222222221111000000000000000000
Q ss_pred hhhhhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHH-----HHHHHH
Q 047673 242 FKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVM-----ATQLVL 316 (437)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 316 (437)
...+++.. .-.+.... +.......++.+++.++.+++.||.+++... ......++.+.+.... ......
T Consensus 230 ~~~~~~~~---~g~~~~~~-~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (394)
T PRK11652 230 SGVLMGAV---LGLSSMTV-SILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGWFGVMNVWTLL 303 (394)
T ss_pred ChHHHHHH---cCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 00011110 01133344 5566666777888888888888888733322 2222222222211111 111122
Q ss_pred HHHHHHHhhhc-ccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047673 317 ICVYNAGFTFL-WWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYH 373 (437)
Q Consensus 317 ~~~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 373 (437)
......+.+.+ ..+....+..|.+| +.++++.++.+....+++.+++.+.+.+...
T Consensus 304 ~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 304 VPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 22222222222 33444455567777 5689999999999999999999888876544
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=182.87 Aligned_cols=341 Identities=13% Similarity=0.085 Sum_probs=214.0
Q ss_pred HHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhch
Q 047673 12 AASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGR 91 (437)
Q Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Gr 91 (437)
+.++.+...+..++..|.. |.+.+++ |+|..++|++.+++.+...++++++|+++||+||
T Consensus 9 l~~~~~~~~~~~~~~~p~l--~~~l~~~------------------g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~ 68 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFF--PAWLKGI------------------GLGEEMIGLLIGAALIARFAGGLFFAPLIKDANH 68 (382)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4455666666666665554 6666666 8999999999999999999999999999999998
Q ss_pred hHHH----HHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcccccccchHHHHHHHHHHHHHHHH
Q 047673 92 KASI----LVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGTPKHIGGFNIGFQVCVATGILSAN 155 (437)
Q Consensus 92 r~~~----~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~~~~r~~~~~~~~~~~~~G~~~~~ 155 (437)
|+.. ..+..+..+ ..+..+++++.+++.| ...++..+ .+++|+++.+....+.++|.+++|
T Consensus 69 ~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~~~~~~~~g~~~~~~slG~~~g~ 145 (382)
T TIGR00902 69 IIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANT-WQKQFGLDYGKVRLIGSAAFIIGS 145 (382)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHH-HHHHcCCCccHHHHHHHHHHHHHH
Confidence 5433 233222222 2444678899998888 22233322 257789999999999999999999
Q ss_pred HHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHH-HHHHHhhh
Q 047673 156 LLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELD-DLIRQSSV 234 (437)
Q Consensus 156 ~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 234 (437)
.+++.+.+.. |||..|++..+..++..+.....|+.++...++++ .++..+...+..+++....... .......
T Consensus 146 ~l~g~l~~~~---g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~- 220 (382)
T TIGR00902 146 ALFGGLIGMF---DEQNILAILTAGLAFMLIGFLIKPTIPPKDAIPED-ESQGDSAFIALLKNPMNLRFLAAVCLIQGA- 220 (382)
T ss_pred HHHHHHHHHc---ChhHHHHHHHHHHHHHHHHHHcCCCCCCCcccccc-ccccchhHHHHHcChHHHHHHHHHHHHHHH-
Confidence 9999888654 89999887665433333333333332211000000 0010111122222221111000 0000000
Q ss_pred hhccccchhhhhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHH
Q 047673 235 SKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQL 314 (437)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (437)
...+...........-.+.... +.......+..+++.++.+++.||+|+|+.+..+.+...+....+....+.+.
T Consensus 221 ----~~~~~~~~~~~l~~~g~s~~~~-g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~ 295 (382)
T TIGR00902 221 ----HAAYYGFSAIYWQAAGISASAT-GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPL 295 (382)
T ss_pred ----HHHHHHHHHHHHHHCCCCHhHH-HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHH
Confidence 0011111111111112255556 77788888999999999999999999999999999999988888776655442
Q ss_pred HH--HHHHHHHhhhcccccccccccccCChhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhcccchhhHHHHHHH
Q 047673 315 VL--ICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVA-VGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLI 387 (437)
Q Consensus 315 ~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 387 (437)
+. ..+-...++.. .+....++.+. |++.|+++.++.+. ...++..+++.+.|.+.|+.+...++..+++.+
T Consensus 296 ~~~~q~l~g~~~~~~-~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~ 369 (382)
T TIGR00902 296 IFLLQILHCGTFAVC-HLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAA 369 (382)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 22 33333333332 23334566676 99999999999864 557889999999999999988755555555444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-23 Score=193.58 Aligned_cols=324 Identities=13% Similarity=0.096 Sum_probs=224.7
Q ss_pred CCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhcc--ccceeeeee---------
Q 047673 54 SNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAAL--DIYMLILGL--------- 122 (437)
Q Consensus 54 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~--~~~~l~~~r--------- 122 (437)
+.++++|..+.|++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++...+. +++.+++.|
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 568899999999999999999999999999999999999999999999999999999874 555778888
Q ss_pred ---cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhh-ccCCCChhH
Q 047673 123 ---NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGL-LFLPETPSS 197 (437)
Q Consensus 123 ---~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~-~~l~esp~~ 197 (437)
+...+.++|. ++||++..++...+..+|.+++.++++.+.+.. .||+.+|++.++.+++..+++ ++..|+|..
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~--~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~ 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESS--LGWPSIFYVFGIVGLIWFILWFLFYSDSPSK 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC--CCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 5667789999 999999999999999999999999999988762 599999999988888876665 445677742
Q ss_pred HHhhCCCHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhccccccccc----------------------
Q 047673 198 IIQRNNDYQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQLL---------------------- 255 (437)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 255 (437)
. +.-..+|.+...+.... ...++..+.+|+++++++..+...
T Consensus 223 h--~~is~~El~~I~~~k~~--------------~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~ 286 (466)
T KOG2532|consen 223 H--PNISEKELKYIEKGKSE--------------AHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLK 286 (466)
T ss_pred C--CCCCHHHHHHHHhcccc--------------cccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 1 11101121111111000 000011245666666655444333
Q ss_pred -----ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCch---------hHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 047673 256 -----SESTSLLMSALVTGGIGTVSTILPMILADKLGRK---------VLFLLGGIQILVSQVMIGSVMATQ-LVLICVY 320 (437)
Q Consensus 256 -----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 320 (437)
+..+. ++..++..+...+..+++|.++||+.+| -.-.++....++.++.+.+..... ...+.++
T Consensus 287 ~VL~f~v~~~-G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l 365 (466)
T KOG2532|consen 287 EVLGFDVRET-GFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILL 365 (466)
T ss_pred HHhCCChhhh-hHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHH
Confidence 77788 8999999999999999999999998652 223455555555666665555322 1222222
Q ss_pred HHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccchhhHHHHHHHHHHHHhhhc
Q 047673 321 NAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHF---KAGVFFFFGGWLIAMTTFVHFF 396 (437)
Q Consensus 321 ~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~ 396 (437)
....+. +..............++..+..+|+.+.+..+.++++|.+.+.+..+. .|...++..++..+.+.+.+.+
T Consensus 366 ~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 366 TIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred HHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence 222222 222222222222215577899999999999999999999999998422 3554444444444444443333
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=183.78 Aligned_cols=346 Identities=12% Similarity=0.031 Sum_probs=206.3
Q ss_pred HHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhh-----c
Q 047673 16 GLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAF-----G 90 (437)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-----G 90 (437)
++.+|+..+...... |.+.++- |++.+++|++..+... .+..+++|+++||+ |
T Consensus 8 ~~~~~~~~~~~~~~~--~~~l~~~------------------g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g 65 (402)
T PRK11902 8 GFASGLPLALTSGTL--QAWMTVE------------------GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLG 65 (402)
T ss_pred HHHHhhhHHHHHHHH--HHHHHHc------------------CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCC
Confidence 455666666655333 6666655 8999999999777775 59999999999999 8
Q ss_pred hhH-HHHHHHHHHHHHHHHHhhcc---ccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHHHHHH
Q 047673 91 RKA-SILVGGTTFLTSSAIGGAAL---DIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVATGILS 153 (437)
Q Consensus 91 rr~-~~~~~~~~~~~~~~~~~~a~---~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~ 153 (437)
||| .+.++.++.+++..+.++.+ +++.+++.. ...+++.|+. +++|+++.++...+..+|.++
T Consensus 66 ~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~ 145 (402)
T PRK11902 66 RRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLV 145 (402)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHH
Confidence 876 78888888888888777763 344444443 5667889999 889999999999999999999
Q ss_pred HHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHHH-HHHHh
Q 047673 154 ANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD-LIRQS 232 (437)
Q Consensus 154 ~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 232 (437)
++.++..+.+.. +|||..|++.++..++..+..+++||+++...++++..++..+..++..+++........ .....
T Consensus 146 g~~l~~~l~~~~--~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~ 223 (402)
T PRK11902 146 SGGLALWLADRV--LGWGNTYLLMAGLMLAGALTTLWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKL 223 (402)
T ss_pred HhHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 999888876532 389999999777666655555667776542111100001111222233332221111100 00000
Q ss_pred hhhhccccchh-hhhcccccccccccchHHHHHHHHH-HHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHH---
Q 047673 233 SVSKNINHPFK-KIIDRKYRPQLLSESTSLLMSALVT-GGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIG--- 307 (437)
Q Consensus 233 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~--- 307 (437)
.... ...+. ..+... .-.+..+. +...... .++.+++.++.+++.||+++|+.+..+..+..+..+.+.
T Consensus 224 ~~~~--~~~~~~~~l~~~---~G~~~~~~-g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~ 297 (402)
T PRK11902 224 GDAF--AGSLSTTFLIRG---AGFSAGEV-GIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLA 297 (402)
T ss_pred HHHH--HHHHHHHHHHHh---cCCCHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000 000000 01133444 5554443 346889999999999999999987776666555543332
Q ss_pred HHH-HHHHHHHHHH----HHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhH
Q 047673 308 SVM-ATQLVLICVY----NAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFF 381 (437)
Q Consensus 308 ~~~-~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 381 (437)
... +......... ..+... ........++.+.+|.+. .++.+....++...++++.|.+.|..|+..++.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~ 373 (402)
T PRK11902 298 VTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYL 373 (402)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 211 1122221111 111111 223334456667777554 445555556677667778999999999876666
Q ss_pred HHHHHHHHHHHhhh
Q 047673 382 FGGWLIAMTTFVHF 395 (437)
Q Consensus 382 ~~~~~~~~~~~~~~ 395 (437)
.+..+.+.+++...
T Consensus 374 ~~~~~~~~~~~~~~ 387 (402)
T PRK11902 374 MTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHHHHHHH
Confidence 66555555444433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-22 Score=187.77 Aligned_cols=342 Identities=13% Similarity=0.046 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 047673 6 VLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTV 85 (437)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l 85 (437)
++++..++...+....|...++....+ . .++|.++...+.+.+.++++++++++.+++|.+
T Consensus 44 l~i~~~~~~~y~~~~~d~~si~~a~l~-----g--------------~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L 104 (495)
T KOG2533|consen 44 LFILPFLCYLYFHAYLDKSSIVNASLS-----G--------------LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLL 104 (495)
T ss_pred HHHHHHHHHHHHHHhcchhcchhHHHc-----C--------------CccccchhhhhhhhHHHHHHHHHHHHHhhHHHH
Confidence 445556677777788888776644311 1 245568899999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHHHHH
Q 047673 86 TRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVATGIL 152 (437)
Q Consensus 86 ~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~ 152 (437)
.||++-.+.+....+++++-.++....+|++.+++.| ....+++.|+ +++|++.++++.++.++|.+
T Consensus 105 ~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i 184 (495)
T KOG2533|consen 105 GDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNI 184 (495)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhH
Confidence 9999999999999999999998888899999999999 6678889999 99999999999999999999
Q ss_pred HHHHHHhhhhccC---CCcchHHHHHhhHHHHHH-HHHhhccCCCChh--HHHhhCCCHHHHHHHHHHHhCCccHH-HHH
Q 047673 153 SANLLNYGTQKIK---GGWGWRISLAMAVAPASI-LTIGLLFLPETPS--SIIQRNNDYQKAEKIMQIVRGTADVQ-AEL 225 (437)
Q Consensus 153 ~~~~~~~~l~~~~---~~~~wr~~f~~~~i~~~~-~~~~~~~l~esp~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 225 (437)
+|++++..+.+.. ...||||.|++.+++.++ +++.++++|+.|. +..++++ .+-..+..++.......+ .+.
T Consensus 185 ~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~e-k~~~~~~~~~~~~~~~~~~~~~ 263 (495)
T KOG2533|consen 185 FGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEE-KELVVERLRESPSGGIENKFKW 263 (495)
T ss_pred HHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHH-HHHHHHHHHhccCCCcccccCH
Confidence 9999998864422 236999999998766665 5566778999986 2221111 111111122111111000 111
Q ss_pred HHHHHHhhhh------------hcc---ccchhhhhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhh----c
Q 047673 226 DDLIRQSSVS------------KNI---NHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADK----L 286 (437)
Q Consensus 226 ~~~~~~~~~~------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~ 286 (437)
....+..... ... ...|..++-.. ..-.+..++ ..+.++..++++++.+++|+++|| .
T Consensus 264 ~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~--~~~~s~~~a-~~ls~~~~~~g~v~~i~ag~lsdr~~~~~ 340 (495)
T KOG2533|consen 264 KGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKS--NGGYSELQA-NLLSTPYDVGGIVGLILAGYLSDRLKTIF 340 (495)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHc--CCCcChHHh-ccccchHHhhhHHHHHHHHHHHHHHhhhH
Confidence 1111110000 000 01111111111 011255666 788999999999999999999999 4
Q ss_pred CchhHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh-cccccccccccccCChhhh-hhHHHHHHHHHHHHHHHH
Q 047673 287 GRKVLFLLGGIQILVSQ-VMIGSVMATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIR-SAGKSITVAVGLLFTSLV 363 (437)
Q Consensus 287 g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r-~~~~g~~~~~~~~~~~~~ 363 (437)
.+|........+..+.. ..+.............+...++. ...++.....++....+.| -+..+........++.++
T Consensus 341 ~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~ 420 (495)
T KOG2533|consen 341 ARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAIS 420 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhh
Confidence 55554444444433333 33333321222222222222222 2233334444555544444 444444445555666666
Q ss_pred HHHHHHH
Q 047673 364 AQTVLAM 370 (437)
Q Consensus 364 ~~~~~~~ 370 (437)
+.+....
T Consensus 421 ~~~~~~~ 427 (495)
T KOG2533|consen 421 GQLFRSL 427 (495)
T ss_pred hhhcccc
Confidence 6555443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=184.51 Aligned_cols=314 Identities=14% Similarity=0.097 Sum_probs=195.8
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHHHhhhhhhh----hchhH-HHHHHHHHHHHHHHHHhhccccc------eeeeee--
Q 047673 56 YCKFDSQLLAAFTSSLYIAGLIASLFASTVTRA----FGRKA-SILVGGTTFLTSSAIGGAALDIY------MLILGL-- 122 (437)
Q Consensus 56 ~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~a~~~~------~l~~~r-- 122 (437)
++|+++.+.|++.++..+..++..|+.|+++|| +|||| .++.+....+++.+++...++.. .+++.+
T Consensus 29 ~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (437)
T TIGR00792 29 VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYIL 108 (437)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 349999999999999999999999999999997 68744 67778888888888887776543 222222
Q ss_pred ----------cchhhhhhcc--cccccchHHHHHHHHHHHHHHHHHHHhhhhcc----CCCcchHHHHHhhHHHHHHHHH
Q 047673 123 ----------NAPISLRNGT--PKHIGGFNIGFQVCVATGILSANLLNYGTQKI----KGGWGWRISLAMAVAPASILTI 186 (437)
Q Consensus 123 ----------~~~~~i~~~~--~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~----~~~~~wr~~f~~~~i~~~~~~~ 186 (437)
...++..|.. +++|++..++.+.+..+|.++++.+.+.+... ....+||+.+.+.+++.++..+
T Consensus 109 ~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~ 188 (437)
T TIGR00792 109 LGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLI 188 (437)
T ss_pred HHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHH
Confidence 2235567777 57899999999988888888777665544421 1235899999888776666544
Q ss_pred -hhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHH-HHHHHhhhhhccccchhhhhccccccccc-ccchHHHH
Q 047673 187 -GLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELD-DLIRQSSVSKNINHPFKKIIDRKYRPQLL-SESTSLLM 263 (437)
Q Consensus 187 -~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 263 (437)
..+..+|.++....+++++.+..+..+++.+++....... .......... ...+ ...+..... +.... +.
T Consensus 189 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~-~~ 261 (437)
T TIGR00792 189 ICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNI--KNGV----QVYYFTYVLGDPELF-SY 261 (437)
T ss_pred HHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH--Hcch----hheeEeeecCChHHH-HH
Confidence 4566777652110100001111222233322221111100 0000000000 0000 011111111 23334 55
Q ss_pred HHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh-cccccccccccccCC
Q 047673 264 SALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMAT-QLVLICVYNAGFTF-LWWPLGWLVPSEIFP 341 (437)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p 341 (437)
......+..+++.++.++++||+|+|+.+..+..+.+++.+.+...... ..........+++. ...+..+++.+|..+
T Consensus 262 ~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 341 (437)
T TIGR00792 262 MGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVD 341 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 6666788999999999999999999999988888877776665544322 22222222222222 223444556666654
Q ss_pred -------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047673 342 -------LEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKA 376 (437)
Q Consensus 342 -------~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 376 (437)
++.+|...|+.+....++..+++.+.|.+.+..|+
T Consensus 342 ~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 342 YGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred hhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45678999999999999999999999999987664
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-21 Score=177.95 Aligned_cols=335 Identities=13% Similarity=0.023 Sum_probs=200.9
Q ss_pred HHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchh---
Q 047673 16 GLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRK--- 92 (437)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr--- 92 (437)
.+.+.+..++..+.+ |.+.+++ |.|..+.|++.+++.++..++++++|+++||+|||
T Consensus 13 ~~~~~~~~g~~~p~l--~~~l~~~------------------g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~ 72 (382)
T PRK11128 13 YFGYFFAYGVFLPFW--SVWLKGQ------------------GYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPA 72 (382)
T ss_pred HHHHHHHHHHHhhhH--HHHHHhc------------------CCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHH
Confidence 344445556665554 6677776 88999999999999999999999999999999984
Q ss_pred -HHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcccccccchHHHHHHHHHHHHHHHHHHHh
Q 047673 93 -ASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGTPKHIGGFNIGFQVCVATGILSANLLNY 159 (437)
Q Consensus 93 -~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~ 159 (437)
+.+.+...+. .......+++++.+++.| ...++..++ .++|+++.+....+.++|.++||.+++
T Consensus 73 ~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~~~~~a~~~~~~~~~lg~~igp~lgg 149 (382)
T PRK11128 73 LRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW-QKQIGLDYGKVRLWGSIAFVIGSALTG 149 (382)
T ss_pred HHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH-HhhccCCcchHHHHHHHHHHHHHHHHH
Confidence 3333332222 223334468898888888 122333333 566888899999999999999999999
Q ss_pred hhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHH-HHHHHhhhhhcc
Q 047673 160 GTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELD-DLIRQSSVSKNI 238 (437)
Q Consensus 160 ~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 238 (437)
.+.+.. |||..|++.++..++..+..++.||.++.. +++++.++..+..++..+++....... ........
T Consensus 150 ~l~~~~---g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~---- 221 (382)
T PRK11128 150 KLVSWF---GEQAILWILTAGVASMLLGQLLRPTIMPQG-ESRQQESAGWPAWKALLKEPTVWRFLLCVSLLQGSH---- 221 (382)
T ss_pred HHHHHc---ChhHHHHHHHHHHHHHHHHHHccCCCCCcc-ccccccccccchHHHHHcChhHHHHHHHHHHHHHHh----
Confidence 988654 899999887765554444444456542210 000000000111222222221111000 00000000
Q ss_pred ccchhhhhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 047673 239 NHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLIC 318 (437)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (437)
......+.......-.+.... +.......+..++..++.+++.||+++|+.+..+.++.++..+.+....+.+.....
T Consensus 222 -~~~~~~~~~~~~~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (382)
T PRK11128 222 -AAYYGFSAIYWQAAGYSASTI-GYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVI 299 (382)
T ss_pred -HhHHHHHHHHHHHCCCCHhHH-HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 000000000000111244445 677777788889999999999999999999998888888877766655544422222
Q ss_pred HHHHHhhhc-ccccccccccccCChhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhcccchhhHHHH
Q 047673 319 VYNAGFTFL-WWPLGWLVPSEIFPLEIRSAGKSITVAV-GLLFTSLVAQTVLAMLYHFKAGVFFFFGG 384 (437)
Q Consensus 319 ~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 384 (437)
.+..+.+.+ ..+....+..+. +++++++..+..+.. ..++..+++.+.|.+.|..+...++..++
T Consensus 300 ~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~~ 366 (382)
T PRK11128 300 QILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMAL 366 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 222233222 223333444555 556678888887644 45667899999999999888654444333
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-22 Score=191.30 Aligned_cols=337 Identities=16% Similarity=0.124 Sum_probs=222.7
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee-------------cc
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL-------------NA 124 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r-------------~~ 124 (437)
+-+..+++|+.++......+.+|+.+.+.||||.|++.+.|.++..++.++.+++++++++++.. .+
T Consensus 77 ~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~pa 156 (509)
T KOG2504|consen 77 GSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPA 156 (509)
T ss_pred CCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcch
Confidence 67888899999999999999999999999999999999999999999999999999999998887 44
Q ss_pred hhhhhhcccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhh-ccCCCChhHHHhhCC
Q 047673 125 PISLRNGTPKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGL-LFLPETPSSIIQRNN 203 (437)
Q Consensus 125 ~~~i~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~-~~l~esp~~~~~~~~ 203 (437)
...+..+++++|+.+.|+...+.++|.++-|.+...+.+.. |||+.+++.+.+.+-.++.. ..-|.+++....+.+
T Consensus 157 iviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~---G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~ 233 (509)
T KOG2504|consen 157 VVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKY---GWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEK 233 (509)
T ss_pred hhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHh---CcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhh
Confidence 45556555999999999999999999999888887777554 89999988665555444433 333322211000000
Q ss_pred CHHH-------HHHHHH-HHhCCc--cHH---HHHHHHHHHhhhhh--ccccch----hhhhccccccccc---------
Q 047673 204 DYQK-------AEKIMQ-IVRGTA--DVQ---AELDDLIRQSSVSK--NINHPF----KKIIDRKYRPQLL--------- 255 (437)
Q Consensus 204 ~~~~-------~~~~~~-~~~~~~--~~~---~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~--------- 255 (437)
+.++ .....+ .....+ ... .......+...... ...... .++++.+....+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g 313 (509)
T KOG2504|consen 234 DLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLG 313 (509)
T ss_pred hhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHH
Confidence 0000 000000 000000 000 00000000000000 000000 1223322111111
Q ss_pred -----------------ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCch--hHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047673 256 -----------------SESTSLLMSALVTGGIGTVSTILPMILADKLGRK--VLFLLGGIQILVSQVMIGSVMATQLVL 316 (437)
Q Consensus 256 -----------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (437)
+..+. ..+.++.++..++++++.|+++|+...+ .+..++.+..+++.+.+........+.
T Consensus 314 ~~~p~~~l~~~~~~~g~~~~~a-a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~ 392 (509)
T KOG2504|consen 314 FNVPFVYLPSYAKSLGLSSNDA-AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLI 392 (509)
T ss_pred HHHHHHHHHHHHhhcCCChhhh-HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 66666 8999999999999999999999998743 444555555555554455544443333
Q ss_pred HHHHHHHhhhc-ccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHhh
Q 047673 317 ICVYNAGFTFL-WWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFK-AGVFFFFGGWLIAMTTFVH 394 (437)
Q Consensus 317 ~~~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~ 394 (437)
......++..+ +.......+.|+.+.+.-..+.|+...++.++..++|++.|.+.|..+ |...+.++.++.+.+..++
T Consensus 393 ~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~ 472 (509)
T KOG2504|consen 393 VFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLL 472 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHH
Confidence 33333333333 334444567899999999999999999999999999999999999888 7777777777777777666
Q ss_pred hccc
Q 047673 395 FFLP 398 (437)
Q Consensus 395 ~~~~ 398 (437)
+..+
T Consensus 473 ~~~~ 476 (509)
T KOG2504|consen 473 LILR 476 (509)
T ss_pred HHhH
Confidence 6665
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=175.56 Aligned_cols=327 Identities=11% Similarity=-0.001 Sum_probs=187.5
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHH---hhcc-----ccceeeeee-------
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIG---GAAL-----DIYMLILGL------- 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~a~-----~~~~l~~~r------- 122 (437)
|+++.+.|++.+++.++..+++++.|+++||+|||+.++.+....+++.... .+.+ .+..+++.|
T Consensus 34 g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 113 (396)
T TIGR00882 34 GLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVF 113 (396)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999999988776665544322 1111 122233334
Q ss_pred -cchhhhhhcc-c--ccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhcc-CCCChhH
Q 047673 123 -NAPISLRNGT-P--KHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLF-LPETPSS 197 (437)
Q Consensus 123 -~~~~~i~~~~-~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~-l~esp~~ 197 (437)
.......++. + +++++..+......++|.++++.+++.+.+ .+||.+|++.++..++..+..+. .||+|+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 189 (396)
T TIGR00882 114 SAGAGAIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILFS----IDPQIVFWLGSGFALILMLLLMFAKPKAPSS 189 (396)
T ss_pred ccchhhHHHHHHHhhhhcccccchhhhhcccHHHHHHHHHhhhhc----cCchHHHHHHHHHHHHHHHHHHHhCCCCchh
Confidence 1222233333 2 344556777888889999999999887754 37999999987776665544333 4554431
Q ss_pred HHhhC-----CCHHHHHHHHHHHhCCccHHH-HHHHHHHHhhhhhccccchhhhhcccccccccccchHHHHHHHHHHHH
Q 047673 198 IIQRN-----NDYQKAEKIMQIVRGTADVQA-ELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGI 271 (437)
Q Consensus 198 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (437)
...++ ++.++.++ ..+..+++.... .............. .......++......-.+.... +.......+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~-g~~~~~~~i~ 266 (396)
T TIGR00882 190 ATVANALGANASAFSLKL-ALELFRQRKFWMFVLYVVGVACVYDVF-DQQFANFFTSFFATPQQGTRVF-GYVTTMGELL 266 (396)
T ss_pred hhhhcccccccCCCCHHH-HHHHHcCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccccchHHH-HHHHHHHHHH
Confidence 10000 00000111 111111111100 00000000000000 0000001111110001122334 6667777788
Q ss_pred HHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccccccccccCChhhhhhHHH
Q 047673 272 GTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFLW-WPLGWLVPSEIFPLEIRSAGKS 350 (437)
Q Consensus 272 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~r~~~~g 350 (437)
..++.+..+++.||+|+|+.+.++..+.++...+.....+...........+.+... ......+..+..|++.++++.+
T Consensus 267 ~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~ 346 (396)
T TIGR00882 267 NALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYL 346 (396)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeeh
Confidence 888999999999999999999888887777666655433332222222222222111 1122334566678888887776
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHHH
Q 047673 351 I-TVAVGLLFTSLVAQTVLAMLYHFKAGVFFF-FGGWLIAMTT 391 (437)
Q Consensus 351 ~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~ 391 (437)
. .+....+++.+++.+.|.+.|..|+...+. .+++..+.++
T Consensus 347 ~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 347 IGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 6 567889999999999999999888654444 4444333333
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-20 Score=176.48 Aligned_cols=327 Identities=14% Similarity=0.085 Sum_probs=217.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhc-----cccceeeeee------------
Q 047673 60 DSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAA-----LDIYMLILGL------------ 122 (437)
Q Consensus 60 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a-----~~~~~l~~~r------------ 122 (437)
|+.+.+++.++..+...+.++++|.++||+.|||+++.+.++.++..+..++. .+.+.+++.-
T Consensus 43 S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~P 122 (524)
T PF05977_consen 43 SPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNP 122 (524)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999988877665554432 3444444433
Q ss_pred cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChh--HHH
Q 047673 123 NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPS--SII 199 (437)
Q Consensus 123 ~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~--~~~ 199 (437)
.-.+++.|.. +++...+.++.+...++..++||.+++.+.... |-.+.|++.++..++.+.....++..++ ...
T Consensus 123 A~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~---G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~ 199 (524)
T PF05977_consen 123 AWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFF---GAAAAFLINALSFLISILALLRWKPPPPPSSLP 199 (524)
T ss_pred HHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence 5667888999 889999999999999999999999999887654 5677888877655544443333332211 000
Q ss_pred hhCCCHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhccccccccc-ccchHHHHHHHHHHHHHHHHhhh
Q 047673 200 QRNNDYQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQLL-SESTSLLMSALVTGGIGTVSTIL 278 (437)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 278 (437)
+++- .++.++..+....++............ . ........++.......+- +.... +.+....+++.++|+++
T Consensus 200 ~e~~-~~~l~~G~ryv~~~~~l~~~l~~~~~~---~-l~~~a~~aLlPl~a~~~l~~~a~~y-Gll~a~~gvGai~Gal~ 273 (524)
T PF05977_consen 200 RERF-FSALREGLRYVRSSPPLRSVLLRSFLF---N-LFASAVWALLPLFARDVLGGGASGY-GLLLAAFGVGAILGALL 273 (524)
T ss_pred hhhh-hhhHHHHHHHHhcchHHHHHHHHHHHH---H-HhhhHHHHhhhHHHHHHhCCcHHHH-HHHHHHHHHHHHHHHHH
Confidence 0000 111222233333332222111100000 0 0000111111100001111 44455 88999999999999999
Q ss_pred HHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccCChhhhhhHHHHHHHHHH
Q 047673 279 PMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFL-WWPLGWLVPSEIFPLEIRSAGKSITVAVGL 357 (437)
Q Consensus 279 ~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 357 (437)
.+++.+|+++++++..+.+..+++.+.+.+..+.+.....++..+.+.. ......+...+..|++.||+++++..++..
T Consensus 274 ~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~ 353 (524)
T PF05977_consen 274 LPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFF 353 (524)
T ss_pred HHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHH
Confidence 9999999999999988888888888888877666544444444444432 233334566789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhh
Q 047673 358 LFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHF 395 (437)
Q Consensus 358 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (437)
.+..++..+.|.+.+..|....+..+++..+.+.++..
T Consensus 354 g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 354 GGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998865555555544444444333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-20 Score=163.18 Aligned_cols=353 Identities=10% Similarity=0.031 Sum_probs=231.4
Q ss_pred HHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhh
Q 047673 7 LSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVT 86 (437)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~ 86 (437)
...+.+..-.|+.|+.....+... |.+++.| +++..|.+++..+++.|+.+++++.|++.
T Consensus 13 ~~~v~~t~lFfl~G~~~~l~diLi--p~l~~~f------------------~ls~~~a~liqfaff~gYf~~~lpa~~~~ 72 (422)
T COG0738 13 LAFVLLTSLFFLWGFITCLNDILI--PHLKEVF------------------DLTYFEASLIQFAFFGGYFIMSLPAGLLI 72 (422)
T ss_pred eHHHHHHHHHHHHHHHhhcchhhH--HHHHHHh------------------CccHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 344455555688888888888665 8888888 89999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHh---hccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHHH
Q 047673 87 RAFGRKASILVGGTTFLTSSAIGG---AALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVATG 150 (437)
Q Consensus 87 dr~Grr~~~~~~~~~~~~~~~~~~---~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G 150 (437)
+|+|+|+.++.++.++++++.+.. -..+|..++++- .+..++.... +++..+.+++.+.++++|
T Consensus 73 kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lG 152 (422)
T COG0738 73 KKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLG 152 (422)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhH
Confidence 999999999999999999999985 446676666644 8889999999 888899999999999999
Q ss_pred HHHHHHHHhhhhccC-----C-----------CcchHHHHHhhHHHHHHHHHh--hccCCCChhHHHhhCCCHHHHHHHH
Q 047673 151 ILSANLLNYGTQKIK-----G-----------GWGWRISLAMAVAPASILTIG--LLFLPETPSSIIQRNNDYQKAEKIM 212 (437)
Q Consensus 151 ~~~~~~~~~~l~~~~-----~-----------~~~wr~~f~~~~i~~~~~~~~--~~~l~esp~~~~~~~~~~~~~~~~~ 212 (437)
.+++|+++..+.... + ...||++|...+...++..+. ....|+.+.-..++.+ .+.+ ..
T Consensus 153 a~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~-~~~~--~~ 229 (422)
T COG0738 153 AILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGA-SGSA--GL 229 (422)
T ss_pred HHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccc-cccc--hH
Confidence 999999998766420 0 124888888766554444433 3345654321111111 1100 11
Q ss_pred HHHhCCccHHHHHHHHHHHhhhhhccccchh-hhhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhH
Q 047673 213 QIVRGTADVQAELDDLIRQSSVSKNINHPFK-KIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVL 291 (437)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 291 (437)
.+..+++....-.-....-...+.. ..++. ..+... .-.+..++ ....+...++.++|++++.++..|+...+.
T Consensus 230 ~~l~~~~~~~~gvl~~FlYVG~Eva-~gsfl~~y~~~~---~g~~~~~a-a~~~s~~~~~~~vGRFig~~lm~~~~~~k~ 304 (422)
T COG0738 230 SSLFQNKHLRLGVLAIFLYVGAEVA-IGSFLVSYLEEL---LGLNEQQA-AYYLSFFWVGFMVGRFIGSALMSRIKPEKY 304 (422)
T ss_pred HHHHhChHHHHHHHHHHHHHhHHHH-HHHHHHHHHHhc---CCccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 1111111111100000000000000 00111 000000 12245566 888999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047673 292 FLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAML 371 (437)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 371 (437)
+.+..++..+.++...+......+........+.....|..++...+..| +. ....|......-+|+++.|++.|.+.
T Consensus 305 Laf~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~ 382 (422)
T COG0738 305 LAFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIA 382 (422)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHH
Confidence 88877776666666666655433333333333444456666666678888 33 33334445566778999999999999
Q ss_pred Hhcccc-hhhHHHHHHHHH
Q 047673 372 YHFKAG-VFFFFGGWLIAM 389 (437)
Q Consensus 372 ~~~g~~-~~~~~~~~~~~~ 389 (437)
|..+.. .+......|.+.
T Consensus 383 d~~g~~~~~~~~pllc~ly 401 (422)
T COG0738 383 DMFGIQLTFLIVPLLCYLY 401 (422)
T ss_pred HhhhhHHHHHHHHHHHHHH
Confidence 998844 333333334333
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-20 Score=195.14 Aligned_cols=308 Identities=11% Similarity=-0.041 Sum_probs=194.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHh---hccccceeeeee------------cc
Q 047673 60 DSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGG---AALDIYMLILGL------------NA 124 (437)
Q Consensus 60 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~a~~~~~l~~~r------------~~ 124 (437)
+....+++.+++.+++.++++++|+++||+|||++++.+.++.+++.++.. .+++++.++++| ..
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence 456689999999999999999999999999999999998877666655544 457889999998 44
Q ss_pred hhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCC------CcchHHHHHhh-HHHHHHHHHhhccCCCChh
Q 047673 125 PISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKG------GWGWRISLAMA-VAPASILTIGLLFLPETPS 196 (437)
Q Consensus 125 ~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~------~~~wr~~f~~~-~i~~~~~~~~~~~l~esp~ 196 (437)
.+++.|++ +++|++++++...+..+|.++|+.+++++..... ..+|++.+.+. ....++.++..+.+||+|+
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 56899999 9999999999999999999999999998875410 01344444333 3334444555566788764
Q ss_pred HHHhhC-C----CHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhcccccccccccc-hHHHHHHHHHHH
Q 047673 197 SIIQRN-N----DYQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSES-TSLLMSALVTGG 270 (437)
Q Consensus 197 ~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 270 (437)
....+. + ..++..+..+.+.+++......................+...+... .-.+.. .. +.+.....+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~-g~~~~~~~i 280 (1146)
T PRK08633 205 AAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEV---LGLDNTFQV-QYLLAASAI 280 (1146)
T ss_pred CCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---hCCCcHHHH-HHHHHHHHH
Confidence 321110 0 0011111122222221111100000000000000000000000000 011334 45 778888889
Q ss_pred HHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccCChhhhhhHH
Q 047673 271 IGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFL-WWPLGWLVPSEIFPLEIRSAGK 349 (437)
Q Consensus 271 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~ 349 (437)
+.+++.++.+++.||+++++.+.++.++.+++.+++..........++.+..+++.+ ..+....++.+..|++.|++++
T Consensus 281 g~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~ 360 (1146)
T PRK08633 281 GIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVL 360 (1146)
T ss_pred HHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhh
Confidence 999999999999999999988888887777777766655443333333333333332 2333456667899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047673 350 SITVAVGLLFTSLVAQTVLAML 371 (437)
Q Consensus 350 g~~~~~~~~~~~~~~~~~~~~~ 371 (437)
|+.+.+.+++..+++.+.+.+.
T Consensus 361 ~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 361 AANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988877665555443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.8e-22 Score=170.65 Aligned_cols=314 Identities=13% Similarity=0.025 Sum_probs=192.6
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee-----------cchh
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL-----------NAPI 126 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r-----------~~~~ 126 (437)
+.+....|.+.+.+.+...+.++.+|.++||+|||++++++.+..++..++.+.+.|+..++++| ++.+
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rA 143 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRA 143 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999997777779 8889
Q ss_pred hhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhc---cCCCcchHHHHHhhHHHHHH-HHHhhccCCCChhHHHhh
Q 047673 127 SLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQK---IKGGWGWRISLAMAVAPASI-LTIGLLFLPETPSSIIQR 201 (437)
Q Consensus 127 ~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~---~~~~~~wr~~f~~~~i~~~~-~~~~~~~l~esp~~~~~~ 201 (437)
+++|.. +++|++.++.....+++|.++||.+|+.+.. ..+.+-.-.+-++..+.... ..+..+++||+-+...++
T Consensus 144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~ 223 (451)
T KOG2615|consen 144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRN 223 (451)
T ss_pred HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhc
Confidence 999999 9999999999999999999999999999887 22211111222233333333 445567899984321111
Q ss_pred CC--CHHHHHHHHHHHhCCccHHHHHHHHHHHhhhh---hcccc-----chhhhhc------ccc--cccccccchHHHH
Q 047673 202 NN--DYQKAEKIMQIVRGTADVQAELDDLIRQSSVS---KNINH-----PFKKIID------RKY--RPQLLSESTSLLM 263 (437)
Q Consensus 202 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~------~~~--~~~~~~~~~~~~~ 263 (437)
+. +.+++.+..++..+... ......+......+ ..... -+.+++. ..+ -+.-.+..+. +.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~-G~ 301 (451)
T KOG2615|consen 224 DEHSTLQEAADDRLALLKFAR-IFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQ-GK 301 (451)
T ss_pred ccccchhhhhhhhhhhcchhh-hhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhh-ee
Confidence 11 01111111111111100 00000000000000 00000 0001110 000 0001144555 56
Q ss_pred HHHHHHHHHHHHhhhHHHHhhhcC--chhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccccccccccccC
Q 047673 264 SALVTGGIGTVSTILPMILADKLG--RKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGF-TFLWWPLGWLVPSEIF 340 (437)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 340 (437)
+....++...+......+..+|.. .+..+..+..++.-..+.+........+........+ +....+....++....
T Consensus 302 vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~ 381 (451)
T KOG2615|consen 302 VLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYG 381 (451)
T ss_pred eeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence 666666666666666666666665 4445555555554444444443333222222222222 2223333456667889
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047673 341 PLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYH 373 (437)
Q Consensus 341 p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 373 (437)
|+++||+..|+....+.++-+++|.+.|.....
T Consensus 382 ~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 382 PQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred CcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 999999999999999999999999988876553
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=172.32 Aligned_cols=293 Identities=11% Similarity=-0.017 Sum_probs=176.4
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhh-----chhHH-HHHHHHHHHHHHHHHhhccc---cceeeeee------
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAF-----GRKAS-ILVGGTTFLTSSAIGGAALD---IYMLILGL------ 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-----Grr~~-~~~~~~~~~~~~~~~~~a~~---~~~l~~~r------ 122 (437)
|+|.+++|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.++...+.++.++ .+.+....
T Consensus 19 g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~ 96 (356)
T TIGR00901 19 NVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFF 96 (356)
T ss_pred CCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHH
Confidence 8999999999755 555555 99999999998 89997 56777778777777777743 32333322
Q ss_pred ------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCC-----CcchHHHHHhhHHHHHHHHHhhc-
Q 047673 123 ------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKG-----GWGWRISLAMAVAPASILTIGLL- 189 (437)
Q Consensus 123 ------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~-----~~~wr~~f~~~~i~~~~~~~~~~- 189 (437)
...+++.|++ +++|+++.++...+..+|.++++.+++.+....+ .++||..|++.++..++..+..+
T Consensus 97 ~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 97 SATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred HHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999 9999999999999999999999999988775542 23499999998877776655544
Q ss_pred cCCCChhHHHhhCCCHHHHHHHHHHHhCCcc---HHHHHHHHHHHhhhhhccccchhhhhcccccccccccchHHHHHHH
Q 047673 190 FLPETPSSIIQRNNDYQKAEKIMQIVRGTAD---VQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSAL 266 (437)
Q Consensus 190 ~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (437)
..||+++....++++.++..+..+++.+++. ........... .........+...+ ....-.+..+. +....
T Consensus 177 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---l~~~g~~~~~~-g~~~~ 251 (356)
T TIGR00901 177 LAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLY-KLGDSAATVLTTLF---LLDMGFSKEEI-ALVAK 251 (356)
T ss_pred hccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH-HHHHHHHHHHHHHH---HHHcCCCHHHH-HHHhH
Confidence 3566432100000000001111122211111 00000000000 00000000011111 00111244444 44454
Q ss_pred HHH-HHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhh-ccccccc
Q 047673 267 VTG-GIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVM-----------ATQLVLICVYNAGFTF-LWWPLGW 333 (437)
Q Consensus 267 ~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~~ 333 (437)
..+ +..+++.++++++.||+|+|+.+..+.++.++...++.+.. .......+.+..+++. ...+...
T Consensus 252 ~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 331 (356)
T TIGR00901 252 INGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFV 331 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 444 57789999999999999999988888877777665554431 1122222222222322 2444556
Q ss_pred ccccccCChhhhhhHHHHHHHHHH
Q 047673 334 LVPSEIFPLEIRSAGKSITVAVGL 357 (437)
Q Consensus 334 ~~~~~~~p~~~r~~~~g~~~~~~~ 357 (437)
.+..|.+|+++|++.+|+.+...+
T Consensus 332 ~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 332 AFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHh
Confidence 777899999999999999887654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-20 Score=196.01 Aligned_cols=304 Identities=10% Similarity=0.005 Sum_probs=194.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHH---HHHHHHHHHHHHhhccccceeeeee------------cch
Q 047673 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILV---GGTTFLTSSAIGGAALDIYMLILGL------------NAP 125 (437)
Q Consensus 61 ~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~---~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~ 125 (437)
....++..+++.+++++.++++|+++||+|||+++.. +.++..+..+....++|+++++++| ...
T Consensus 51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~ 130 (1140)
T PRK06814 51 NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKY 130 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHH
Confidence 3568889999999999999999999999999997633 2233333333334458999999999 566
Q ss_pred hhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhC--
Q 047673 126 ISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRN-- 202 (437)
Q Consensus 126 ~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~-- 202 (437)
+++.+++ +++|++++++.+++.++|.++||++++++.... +|++.|+..++..++.++..+++|+++.......
T Consensus 131 a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (1140)
T PRK06814 131 SILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG---NFVILVALLMGIAVLGWLASLFIPKTGNAAPDLKID 207 (1140)
T ss_pred HhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCeec
Confidence 7889999 999999999999999999999999999998654 8999996666666666666677776542100000
Q ss_pred -CCHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhcccccccc--cccchHHHHHHHHHHHHHHHHhhhH
Q 047673 203 -NDYQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQL--LSESTSLLMSALVTGGIGTVSTILP 279 (437)
Q Consensus 203 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (437)
+..++.....+.+.+++................ ..... +.+.+.... .+.... +.+.+..+++.+++.++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~p~~~~~~~g~~~~~~-g~~~~~~~~g~~ig~~~~ 281 (1140)
T PRK06814 208 RNIIRSTITLLKYAKADKRIWLAILGISWFWLVG----AVVLS-QLPLLAKETLGGDENVA-TLFLAVFSVGVAVGSFLA 281 (1140)
T ss_pred cchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH----HHHHH-HhHHHHHHHcCCchHHH-HHHHHHHHHHHHHHHHHH
Confidence 001111222333333322111111000000000 00000 001111111 144455 788888999999999999
Q ss_pred HHHhhhcCchhHHHHhHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhhhc-ccccccccccc
Q 047673 280 MILADKLGRKVLFLLGGIQILVSQVMIGSV--------------------MATQLVLICVYNAGFTFL-WWPLGWLVPSE 338 (437)
Q Consensus 280 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 338 (437)
+++.|+..+++.+..+.++.++..+.+.+. ...+...+..+..+++.+ ..+...+++.+
T Consensus 282 g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 361 (1140)
T PRK06814 282 SKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQA 361 (1140)
T ss_pred HHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 999988877766655555554444433331 111122222222233222 23334567789
Q ss_pred cCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047673 339 IFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYH 373 (437)
Q Consensus 339 ~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 373 (437)
..|++.||+++|+.+.+..++..+++.+.+.+.+.
T Consensus 362 ~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~ 396 (1140)
T PRK06814 362 WANPAHRARVIAANNVLNAAFMVAGTIILALLQAL 396 (1140)
T ss_pred hCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998888753
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-22 Score=173.25 Aligned_cols=373 Identities=12% Similarity=-0.012 Sum_probs=236.9
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHH-------Hhhhhcc-------------------------cccc
Q 047673 5 VVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFL-------EVYRKMK-------------------------EDTK 52 (437)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~-------~~~~~~~-------------------------~~~~ 52 (437)
+.+++.+++...+.|++..+++.++. |.+..+... ....... ..|.
T Consensus 19 r~lilviv~ialllDnmL~~vivPii--P~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~ 96 (464)
T KOG3764|consen 19 RPLILVIVSIALLLDNMLYTVIVPII--PGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPA 96 (464)
T ss_pred cceEEEEEehhhhccCccceeeeccC--ccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCch
Confidence 44455667777888999999988886 888887752 0000000 0112
Q ss_pred cCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee----------
Q 047673 53 ISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL---------- 122 (437)
Q Consensus 53 ~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r---------- 122 (437)
...+.+-+..++|++.++..+...+.+++.|.+.||+|+|..+++|.+++..+++++++.++|+.++++|
T Consensus 97 ~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~ 176 (464)
T KOG3764|consen 97 EAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFA 176 (464)
T ss_pred hccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHH
Confidence 2345567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred --cchhhhhhcc--cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccC-CCChhH
Q 047673 123 --NAPISLRNGT--PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFL-PETPSS 197 (437)
Q Consensus 123 --~~~~~i~~~~--~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l-~esp~~ 197 (437)
...++++|.+ +++|++++|+.-.+.++|.++||.+|+++.+.. |.+.+|++.++..++-..+.+++ +.+...
T Consensus 177 ~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~---Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 177 DTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA---GKSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred HhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc---CCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 6778899999 567899999999999999999999999999876 79999999998888866665554 322210
Q ss_pred HHhhCCCHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhcccccccccccc-hHHHHHHHHHHHHHHHHh
Q 047673 198 IIQRNNDYQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSES-TSLLMSALVTGGIGTVST 276 (437)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 276 (437)
++. .++. ..+.++-..+.+......+......... -.+-..+|. ...+.... +. +.......+...++.
T Consensus 254 ---~~~-~~~~-~~~~~Ll~dP~I~~~agai~~~n~~laf-LePtlslwm---~e~m~~p~w~~-G~~fLp~~~~y~ig~ 323 (464)
T KOG3764|consen 254 ---PDS-TEQG-TPMWSLLMDPYILLIAGAITFSNSSLAF-LEPTLSLWM---LETMFTPGWEV-GLAFLPASLSYAIGT 323 (464)
T ss_pred ---ccc-cccC-ccHHHHHhCchHhhhhcchhhccchHHH-hCcccHHHH---HHhccCCCcce-eeeecccccchhccC
Confidence 000 1111 1111111111111110000000000000 000000000 00000112 22 566667778889999
Q ss_pred hhHHHHhhhcC--chhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cccccccccccccCChh---hhh
Q 047673 277 ILPMILADKLG--RKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-----LWWPLGWLVPSEIFPLE---IRS 346 (437)
Q Consensus 277 ~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~~---~r~ 346 (437)
.+.|.+.||++ |......+.+...++.....+.....-+.+-.+..+++. ...|....+ .+.-..+ ..|
T Consensus 324 ~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~l-vd~rh~s~~~vYG 402 (464)
T KOG3764|consen 324 NLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYL-VDPRHVSGFNVYG 402 (464)
T ss_pred chHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHh-cchhhccccceee
Confidence 99999999999 533444444455545445554444332222222222222 223332222 2333333 567
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccc-chhhHHHHHHHHHHHHh
Q 047673 347 AGKSITVAVGLLFTSLVAQTVLAMLYHFKA-GVFFFFGGWLIAMTTFV 393 (437)
Q Consensus 347 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~ 393 (437)
...++......++.+++|.+.|.+.+..|+ +...+.+....+.+-++
T Consensus 403 sVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl 450 (464)
T KOG3764|consen 403 SVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVL 450 (464)
T ss_pred eHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHH
Confidence 888998888999999999999999998884 34444444444444433
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-19 Score=169.56 Aligned_cols=169 Identities=11% Similarity=0.028 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHh
Q 047673 3 VFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFA 82 (437)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 82 (437)
+++|..++.......+.|...+.- ...|++.++| |+|..+++++.++. ....+++++.
T Consensus 24 ~~Rw~~lva~~~~~~~~g~~y~fs---v~s~~L~~~l------------------gls~~~l~~i~svg-~~~g~~~lp~ 81 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTSFMYAFN---LISGAMQARY------------------NLTQRDLSTITTVG-IAVGYFLLPY 81 (591)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh------------------CcCHHHHHHHHHHH-HHHHHHHHHH
Confidence 345655555554444444333221 1125666666 89999999998874 4456778889
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHhhc------cccceeeeee------------cchhhhhhcccccccchHHHHH
Q 047673 83 STVTRAFGRKASILVGGTTFLTSSAIGGAA------LDIYMLILGL------------NAPISLRNGTPKHIGGFNIGFQ 144 (437)
Q Consensus 83 g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a------~~~~~l~~~r------------~~~~~i~~~~~~~r~~~~~~~~ 144 (437)
|++.||+|||+++.++.+++.+++++++++ ++++.+++.| .+...+.+++|++||++.++..
T Consensus 82 G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~ 161 (591)
T PTZ00207 82 SFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMK 161 (591)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHH
Confidence 999999999999999999999999999997 6888888888 3445667777889999999999
Q ss_pred HHHHHHHHH-HHHHHhhhhccCCCcchHHHHHhhHHHHHHH-HHhhcc--CCCChhHH
Q 047673 145 VCVATGILS-ANLLNYGTQKIKGGWGWRISLAMAVAPASIL-TIGLLF--LPETPSSI 198 (437)
Q Consensus 145 ~~~~~G~~~-~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~-~~~~~~--l~esp~~~ 198 (437)
.+.++|.++ +++...++. .+|+..|++.++..++. ++...+ .|+.|++.
T Consensus 162 ~~~gLGsaI~~~l~~~l~~-----~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~ 214 (591)
T PTZ00207 162 TFTGLGSAILGSIQLAFFS-----DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTG 214 (591)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhc
Confidence 999999975 555555443 26887777766554443 333333 35545543
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-19 Score=167.48 Aligned_cols=333 Identities=13% Similarity=0.065 Sum_probs=198.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHhhhhhhh-hchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------c
Q 047673 57 CKFDSQLLAAFTSSLYIAGLIASLFASTVTRA-FGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------N 123 (437)
Q Consensus 57 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~ 123 (437)
+|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++++.++++| .
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 122 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN 122 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence 48899999999999999999999999999999 8999999999999999999999998887777777 4
Q ss_pred chhhhhhcc-cc---cccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhcc----CCCCh
Q 047673 124 APISLRNGT-PK---HIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLF----LPETP 195 (437)
Q Consensus 124 ~~~~i~~~~-~~---~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~----l~esp 195 (437)
..++++|++ ++ +|+++.+++..+.++|.++|+.+++.+.+. .|||+.|.+.++..++..+.+.+ +++.|
T Consensus 123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~---~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~ 199 (475)
T TIGR00924 123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN---YGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIG 199 (475)
T ss_pred HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh---cChHHHHHHHHHHHHHHHHHHHHcccccccCC
Confidence 467888988 65 388899999999999999999999988754 38999999877654444433322 22222
Q ss_pred hHHHhhCCCHHHHHHHHHH--------------H-hCCccHHHHH-------------HHHHHH-hh-hhhc--------
Q 047673 196 SSIIQRNNDYQKAEKIMQI--------------V-RGTADVQAEL-------------DDLIRQ-SS-VSKN-------- 237 (437)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~-------------~~~~~~-~~-~~~~-------- 237 (437)
+.. ++.+ .++.+..... . ..+....... ....+. .+ .++.
T Consensus 200 ~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 277 (475)
T TIGR00924 200 SVP-DPLS-GQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVL 277 (475)
T ss_pred CCC-CCcc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHH
Confidence 100 0000 1110000000 0 0000000000 000000 00 0000
Q ss_pred ------------cccchhhhhccc-cccccccc-chHHHHHHHHHHHHHHHHhhhHHHHhhhcCc-----hhHH--HHhH
Q 047673 238 ------------INHPFKKIIDRK-YRPQLLSE-STSLLMSALVTGGIGTVSTILPMILADKLGR-----KVLF--LLGG 296 (437)
Q Consensus 238 ------------~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-----~~~~--~~~~ 296 (437)
+..+...++... ......+. ... ..+.....+..++..++..++-.|.+| +... .++.
T Consensus 278 ~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~-~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~ 356 (475)
T TIGR00924 278 FLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPV-IWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGM 356 (475)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECH-HHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence 000000000000 00000011 113 566666777777776665543333333 3333 6677
Q ss_pred HHHHHHHHHHHHH---------HHHH-HHHHHHHHHHhhhcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 047673 297 IQILVSQVMIGSV---------MATQ-LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQT 366 (437)
Q Consensus 297 ~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 366 (437)
++.+++...+... .+.+ .+...++....-....|....+..+..|++.|++.+|+......+|..+++.+
T Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~ 436 (475)
T TIGR00924 357 LFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYL 436 (475)
T ss_pred HHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666532 1111 22222222222234566667788899999999999999999999999999888
Q ss_pred HHHHHHhcccc-hhhHHHHHHHHHHHHhhh
Q 047673 367 VLAMLYHFKAG-VFFFFGGWLIAMTTFVHF 395 (437)
Q Consensus 367 ~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~ 395 (437)
.....+..++. .+...+++..+.+++..+
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (475)
T TIGR00924 437 ATFGAVPQGVTGVFGKIGLVTLLVGVVMAL 466 (475)
T ss_pred HHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 87766655543 333444444444444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.7e-19 Score=167.74 Aligned_cols=310 Identities=12% Similarity=0.037 Sum_probs=184.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHhhhhhhh-hchhHHHHHHHHHHHHHHHHHhhccccce-eeeee------------
Q 047673 57 CKFDSQLLAAFTSSLYIAGLIASLFASTVTRA-FGRKASILVGGTTFLTSSAIGGAALDIYM-LILGL------------ 122 (437)
Q Consensus 57 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~a~~~~~-l~~~r------------ 122 (437)
+|++..+.+++.+.+.....+..+++|+++|| +||||++.++.+++++++++++++.+... ++++|
T Consensus 45 lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~ 124 (489)
T PRK10207 45 LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKA 124 (489)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccC
Confidence 48899999999999998888999999999999 99999999999999999999999876544 33556
Q ss_pred cchhhhhhcc-cc--cccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHH
Q 047673 123 NAPISLRNGT-PK--HIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSII 199 (437)
Q Consensus 123 ~~~~~i~~~~-~~--~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~ 199 (437)
...+++.|.+ ++ +|+++.+++..+.++|.++||.+++++.+.. |||+.|++.++..++.++.+...++..+...
T Consensus 125 ~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~---gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~ 201 (489)
T PRK10207 125 NPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF---GYSVTYNLCGAGLIIALLVYFACRGMVKDIG 201 (489)
T ss_pred CHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHHHHHHcchhhcccC
Confidence 5678899999 66 4578999999999999999999999998654 8999999875544433333333221110000
Q ss_pred --hhCCCHHHHHHH-------------HHHHhCCccHHHHH-HH---------HHHHhhh---hhcc-------------
Q 047673 200 --QRNNDYQKAEKI-------------MQIVRGTADVQAEL-DD---------LIRQSSV---SKNI------------- 238 (437)
Q Consensus 200 --~~~~~~~~~~~~-------------~~~~~~~~~~~~~~-~~---------~~~~~~~---~~~~------------- 238 (437)
.+++ ..+.... .....+........ .. ....... .+.+
T Consensus 202 ~~~~~~-~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~r~~~~~~l~~~~~~ 280 (489)
T PRK10207 202 SEPDHK-PMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLDKTGRNKMFVAFVLMLEAVV 280 (489)
T ss_pred CCCCcc-chhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 0000 0000000 00000000000000 00 0000000 0000
Q ss_pred -------ccchhhhhcc-cccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhH-------HHHhHHHHHHHH
Q 047673 239 -------NHPFKKIIDR-KYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVL-------FLLGGIQILVSQ 303 (437)
Q Consensus 239 -------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-------~~~~~~~~~~~~ 303 (437)
......++.. .......+....+..+.....+..++.+++.+++.||+++|+. +.++.++.+++.
T Consensus 281 f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~ 360 (489)
T PRK10207 281 FYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGF 360 (489)
T ss_pred HHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHH
Confidence 0000000000 0000000111111344445556677888889999999998863 666777766665
Q ss_pred HHHHHHH----------HHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047673 304 VMIGSVM----------ATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAM 370 (437)
Q Consensus 304 ~~~~~~~----------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 370 (437)
+.+.... +.+.........+.+. ...+....++.+..|++.++.++|+.+....+|+.++..+....
T Consensus 361 ~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 361 LTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4332100 0111222222223332 23444456667889999999999999999999988887776544
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-18 Score=148.61 Aligned_cols=312 Identities=14% Similarity=0.053 Sum_probs=210.2
Q ss_pred CCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee-----------
Q 047673 54 SNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL----------- 122 (437)
Q Consensus 54 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r----------- 122 (437)
++|+|+|.+..|++.+.+.+...+.+++..+++.|+|.++.+..++++..++.++-... +...++.+-
T Consensus 39 r~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~n 117 (395)
T COG2807 39 RQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVIN 117 (395)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHH
Confidence 34449999999999999999999999999999999999999999999999999998877 433333333
Q ss_pred -cchhhhhhcccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhh
Q 047673 123 -NAPISLRNGTPKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQR 201 (437)
Q Consensus 123 -~~~~~i~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~ 201 (437)
..|..+.+.+|++-+..+++|.+..++|..+++.+...+.+.. .+||....+-+.++++.++.++.- ..|....+
T Consensus 118 VLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~--~gW~~aL~~WAl~allAl~~WlPq--~~r~~~~~ 193 (395)
T COG2807 118 VLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHS--GGWRGALGFWALLALLALLIWLPQ--ALREQAAS 193 (395)
T ss_pred HhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--ccHHHHHHHHHHHHHHHHHHHhhh--cccccccc
Confidence 6777788888999999999999999999999999998888766 389999888888888877765432 11110000
Q ss_pred CCCHHHHHHHHHHHhCCccHHH--HHHHHHHHhhhhhccccchhhhhcccccccccccchHHHHHHHHHHHHHHHHhhhH
Q 047673 202 NNDYQKAEKIMQIVRGTADVQA--ELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILP 279 (437)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (437)
..+......++-+++.... .+-..+ +.........+...+...-.+..++ +.+.+...+.+++.++..
T Consensus 194 ---~~~~~~~~~~vw~~~~aW~vtLfmGlq------S~~~Y~~~~WLP~ili~~G~sa~~a-G~llsl~~l~~~~~~ll~ 263 (395)
T COG2807 194 ---IATKLVSVRKVWRSPLAWQVTLFMGLQ------SLLYYIVIGWLPAILIDRGLSAAEA-GSLLSLMQLAQLPTALLI 263 (395)
T ss_pred ---cccccccccccccCchhHHHHHHHHhh------HHHHHHHHHHHHHHHHHcCCCHHHh-hhHHHHHHHHHHHHHHHH
Confidence 0000000000000000000 000000 0000001111111222223377888 999999999999999999
Q ss_pred HHHhhhc-CchhHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccccccccccc-cCChhhhhhHHHHHHHHH
Q 047673 280 MILADKL-GRKVLFLLGGIQILVSQVMIGSVMATQ-LVLICVYNAGFTFLWWPLGWLVPSE-IFPLEIRSAGKSITVAVG 356 (437)
Q Consensus 280 g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~r~~~~g~~~~~~ 356 (437)
..+.+|. .+|+.......++.++.+.+.+.+... .....+++.+.+ +..++....+.. .-.++..+.-.|+.+.++
T Consensus 264 P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G-~~F~laL~li~~rs~~a~~Aa~LSgmaQg~G 342 (395)
T COG2807 264 PLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQG-GAFPLALTLILLRSSDAAIAAALSGMAQGVG 342 (395)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccc-hHHHHHHHHHHhhcCChHHHHHHHHHhhhhh
Confidence 9999975 566777777777888887777665544 222233332222 334433333333 345566788899999999
Q ss_pred HHHHHHHHHHHHHHHHhcc-cchhhH
Q 047673 357 LLFTSLVAQTVLAMLYHFK-AGVFFF 381 (437)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~g-~~~~~~ 381 (437)
++....+|+++|.+.|..| |...+.
T Consensus 343 YllAa~GP~l~G~lhDa~gsw~~~~~ 368 (395)
T COG2807 343 YLLAAFGPWLFGFLHDATGSWSAPLV 368 (395)
T ss_pred HHHHhhhhhhHhHHHHhcCChHHHHH
Confidence 9999999999999999988 443333
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-18 Score=163.56 Aligned_cols=304 Identities=14% Similarity=0.100 Sum_probs=181.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee-----------cchhhhh
Q 047673 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL-----------NAPISLR 129 (437)
Q Consensus 61 ~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r-----------~~~~~i~ 129 (437)
.....|+.+...++.+++.++.|+++|.||||+.++.+.++..+|++.++.++|...++++. .....++
T Consensus 77 ~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~is 156 (599)
T PF06609_consen 77 SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAIS 156 (599)
T ss_pred CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999998888 4445579
Q ss_pred hcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhh--ccCCCChhHHHhhCCCHH
Q 047673 130 NGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGL--LFLPETPSSIIQRNNDYQ 206 (437)
Q Consensus 130 ~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~--~~l~esp~~~~~~~~~~~ 206 (437)
|.. .|.|+...++...........++.++..+... .+|||.|++.++...+.+++. ++.|++ +...+++ +.
T Consensus 157 El~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~---~~WRw~~~~~~i~~~i~~vl~~~fY~PP~--~~~~~~~-~~ 230 (599)
T PF06609_consen 157 ELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH---SGWRWIFYIFIIWSGIALVLIFFFYFPPP--RAQLHGR-KL 230 (599)
T ss_pred HhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC---CCcchHHHHHHHHHHHHHHHHHHHhCCCc--hhhhccc-cC
Confidence 999 88888777766655555555666776655432 489999999887655544332 233432 2111111 11
Q ss_pred HHHHHHHHHh---------------------CC---c----cHHHHHH----HHHH--Hhhhhhcccc--chhhhhcc-c
Q 047673 207 KAEKIMQIVR---------------------GT---A----DVQAELD----DLIR--QSSVSKNINH--PFKKIIDR-K 249 (437)
Q Consensus 207 ~~~~~~~~~~---------------------~~---~----~~~~~~~----~~~~--~~~~~~~~~~--~~~~~~~~-~ 249 (437)
..++.++++. +. + .+...+. .+.. .-+.....+. -..+++++ +
T Consensus 231 s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r 310 (599)
T PF06609_consen 231 SKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRR 310 (599)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccch
Confidence 1111122110 10 0 0000000 0000 0000000011 11223332 1
Q ss_pred cccccc---------------------------cc---chHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHH-HHhHHH
Q 047673 250 YRPQLL---------------------------SE---STSLLMSALVTGGIGTVSTILPMILADKLGRKVLF-LLGGIQ 298 (437)
Q Consensus 250 ~~~~~~---------------------------~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~-~~~~~~ 298 (437)
.....+ +. ... +......+++..++.++.+.+..++++-|.. +++.++
T Consensus 311 ~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~-~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~ 389 (599)
T PF06609_consen 311 GFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEI-GWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVL 389 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccee-ehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHH
Confidence 111111 11 133 5667777888888999999999988776554 455555
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHhhhcccc-cccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047673 299 ILVSQVMIGSVMATQ--LVLICVYNAGFTFLWWP-LGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAML 371 (437)
Q Consensus 299 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 371 (437)
+.+..-++....... ....+....+++.+... .....+.-..|++.-+++.|+...+..+|+.++..++..+.
T Consensus 390 ~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 390 MTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 554444443322111 22222223333332222 22334455678899999999999999999888877765433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-17 Score=155.84 Aligned_cols=349 Identities=10% Similarity=-0.074 Sum_probs=194.2
Q ss_pred HHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHH--HHHHHHHHHHHHHHh-hhhh
Q 047673 10 IVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAF--TSSLYIAGLIASLFA-STVT 86 (437)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~s~~~l~~~i~~~~~-g~l~ 86 (437)
..+...++..|.-.+...+.. |.+.++. |++..++|++ .+.+.+...+.+|+. ++..
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~l--p~~l~~~------------------g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~ 63 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDAL--PTLLRED------------------GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWS 63 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHH--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344555688888877776554 6676666 8899999997 467788888888888 4479
Q ss_pred hhhchhHHHHHHHHHH-HHHHHHHh-h--ccc-cceeeeee------------cchhhhhhcc-cccccchHHHHHHHHH
Q 047673 87 RAFGRKASILVGGTTF-LTSSAIGG-A--ALD-IYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVA 148 (437)
Q Consensus 87 dr~Grr~~~~~~~~~~-~~~~~~~~-~--a~~-~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~ 148 (437)
||+||||..++...+. .+.....+ + ..+ ...++..- ....+..|.. +++++...+....+..
T Consensus 64 ~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~ 143 (390)
T TIGR02718 64 WRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVM 143 (390)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHH
Confidence 9999999875554332 21222222 1 222 11111112 2223345555 5555666777777778
Q ss_pred HHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHHHH
Q 047673 149 TGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDDL 228 (437)
Q Consensus 149 ~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (437)
+|.++|+...+.+.+.. |||..|++.++..++..+..++++|+++. ++++ .++..+...+..+++.........
T Consensus 144 lG~~~g~~~~~~l~~~~---gw~~~f~~~a~l~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 217 (390)
T TIGR02718 144 IGFFGGGAGTLVLFGKF---GQRPAFLLVACVPLASLVCVLWLKDRAVA--SPEA-PLARRASLFRFFRRPLAWSLLALA 217 (390)
T ss_pred HHHHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHcCCCCcC--cccc-chhhHHHHHHHHcCcCHHHHHHHH
Confidence 88888887777766543 89999999887766655544444433211 0111 111111122222222211111000
Q ss_pred HHHhhhhhccccchhhhhcccccccccccchHHHHHHHHHH-HHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHH
Q 047673 229 IRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTG-GIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIG 307 (437)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 307 (437)
...... ...............-.+.++. +......+ ...+++.++.|++.||+|+|+.+..+..+.++..+...
T Consensus 218 ~l~~~~----~~~~~~~~~~~l~~~G~s~~~i-g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~ 292 (390)
T TIGR02718 218 LLSAMT----AVSGFGLSKLYLVDAGWPLEWI-GRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWF 292 (390)
T ss_pred HHHHHH----HHHHHHHhhHHHHhcCCCHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0001111111111112355555 66665555 45667789999999999999988877665533332222
Q ss_pred HHHHH------HHHHHHHHH--HHhhhcccccccccccccCCh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 047673 308 SVMAT------QLVLICVYN--AGFTFLWWPLGWLVPSEIFPL-EIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGV 378 (437)
Q Consensus 308 ~~~~~------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~-~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 378 (437)
..... ......... ...+...... .....+..++ +.+++.+++.+...+++..++|.+.|.+.|..|+..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~ 371 (390)
T TIGR02718 293 AQAAFWLAPGIAVAWSCSAFGSLITGITSVAI-YTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAG 371 (390)
T ss_pred HHHHcccCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 11110 011111111 1122222222 2333344554 889999999999999999999999999999888755
Q ss_pred hhHHHHHHHHHH
Q 047673 379 FFFFGGWLIAMT 390 (437)
Q Consensus 379 ~~~~~~~~~~~~ 390 (437)
.+..+..+.+.+
T Consensus 372 ~f~~~~~~~l~a 383 (390)
T TIGR02718 372 GFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHH
Confidence 555544444443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-17 Score=154.24 Aligned_cols=336 Identities=13% Similarity=0.017 Sum_probs=204.2
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhh----hhchhHHHHHH-HHHHHHHHHHHhhccccceeee------------
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTR----AFGRKASILVG-GTTFLTSSAIGGAALDIYMLIL------------ 120 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~~~~~-~~~~~~~~~~~~~a~~~~~l~~------------ 120 (437)
|++..+.+++..+..+...+.+|+.|+++| |+||||.++++ .....++.++.++++++..++.
T Consensus 35 g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i 114 (477)
T TIGR01301 35 GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAI 114 (477)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHH
Confidence 889999999999999999999999999999 59999998774 6666677777777776542221
Q ss_pred ee-----------------cchhhhhhcc-cccc--cchHHHHHHHHHHHHHHHHHHHhhhh--ccCC----------Cc
Q 047673 121 GL-----------------NAPISLRNGT-PKHI--GGFNIGFQVCVATGILSANLLNYGTQ--KIKG----------GW 168 (437)
Q Consensus 121 ~r-----------------~~~~~i~~~~-~~~r--~~~~~~~~~~~~~G~~~~~~~~~~l~--~~~~----------~~ 168 (437)
.+ ...++++|.+ +++| +.+.++.+.+.++|.++|+.+++... +..+ ..
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~ 194 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCA 194 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccc
Confidence 01 5667899999 6654 57999999999999999999988641 1110 02
Q ss_pred chHHHHHhhHHHHHHHH-HhhccCCCChhHHHhhCCCHHH------------HHHHHHHHhCCccHHHHHHHHHHHhhhh
Q 047673 169 GWRISLAMAVAPASILT-IGLLFLPETPSSIIQRNNDYQK------------AEKIMQIVRGTADVQAELDDLIRQSSVS 235 (437)
Q Consensus 169 ~wr~~f~~~~i~~~~~~-~~~~~l~esp~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (437)
+.|..|++.++..++.. +..+..+|.|....++.+ .++ ..+..+.+++.+.........+.
T Consensus 195 ~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqf----- 268 (477)
T TIGR01301 195 NLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI-NSEAAPPSKHGEEAFFGELFGAFKYLPRPVWILLLVTC----- 268 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccch-hhhcccccccchhhhHHHHHHHHHHCCHHHHHHHHHHH-----
Confidence 67899999887666644 456678887521100000 000 00111111111110000000000
Q ss_pred hccccchh------------hhhcccc-ccccc--ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCc-hhHHHHhHHHH
Q 047673 236 KNINHPFK------------KIIDRKY-RPQLL--SESTSLLMSALVTGGIGTVSTILPMILADKLGR-KVLFLLGGIQI 299 (437)
Q Consensus 236 ~~~~~~~~------------~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~ 299 (437)
.....|. +++.... ..... ..... .+.....++...+.+++..++.+|+|+ |++...+.++.
T Consensus 269 -fsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G-~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~ 346 (477)
T TIGR01301 269 -LNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAG-AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIIL 346 (477)
T ss_pred -HHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 0000000 1111000 00000 00012 455556666667888888999999985 67778888888
Q ss_pred HHHHHHHHHHHH---------------------HHHHHHHHHHHHhhh-cccccccccccccCChh--hhhhHHHHHHHH
Q 047673 300 LVSQVMIGSVMA---------------------TQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLE--IRSAGKSITVAV 355 (437)
Q Consensus 300 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~--~r~~~~g~~~~~ 355 (437)
++++....+... ...........|... ....++++++++..|++ ..|..+|+.|.+
T Consensus 347 ~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~ 426 (477)
T TIGR01301 347 AICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLA 426 (477)
T ss_pred HHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHH
Confidence 887777765442 012222222233332 34556788888888854 458999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcc---cchhhHHHHHHHHHHHHhhhccccCC
Q 047673 356 GLLFTSLVAQTVLAMLYHFK---AGVFFFFGGWLIAMTTFVHFFLPETK 401 (437)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (437)
..+.+.+.....|.+.+..| ...+.+-++..++.++...+.+|+.+
T Consensus 427 I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 427 IVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999988888666665 23334444444555666666677654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-19 Score=162.89 Aligned_cols=138 Identities=12% Similarity=0.088 Sum_probs=120.4
Q ss_pred ccCChhH-HHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee-----------cc
Q 047673 57 CKFDSQL-LAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL-----------NA 124 (437)
Q Consensus 57 ~~~s~~~-~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r-----------~~ 124 (437)
+|+|..| .|.+.++++.+++++.++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+.| ..
T Consensus 56 lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~ 135 (511)
T TIGR00806 56 LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAY 135 (511)
T ss_pred cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3999999 99999999999999999999999999999999999999999999999999999999999 66
Q ss_pred hhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHH---hhHHHHHHHHHhhccCCCChhHH
Q 047673 125 PISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLA---MAVAPASILTIGLLFLPETPSSI 198 (437)
Q Consensus 125 ~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~---~~~i~~~~~~~~~~~l~esp~~~ 198 (437)
..++..|+ +++|+++.++..++..+|.+++++++..+.. +|||+.+. +......++++..+++|..++.+
T Consensus 136 ~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s----~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl 209 (511)
T TIGR00806 136 SSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVT----LGWISYSTLNIISLVFMTFSVFLALFLKRPKRSL 209 (511)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhh
Confidence 77899999 9999999999999999999999999998542 47886554 34444455666778888665543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-19 Score=173.65 Aligned_cols=165 Identities=15% Similarity=0.115 Sum_probs=133.6
Q ss_pred HHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 047673 10 IVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAF 89 (437)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~ 89 (437)
+..++..+..+...+..+.+. +.+.++| +++..+.|++.+.+.++++++.++.++++||+
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l--~~iek~F------------------~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~ 95 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSL--TTIERRF------------------KLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL 95 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhc--hhhhhhh------------------CCCCCcceeeeehhhHHHHHHHHHHHHhhccc
Confidence 444456666667777777554 6777777 88999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcc---------------------------------------------------cccee
Q 047673 90 GRKASILVGGTTFLTSSAIGGAAL---------------------------------------------------DIYML 118 (437)
Q Consensus 90 Grr~~~~~~~~~~~~~~~~~~~a~---------------------------------------------------~~~~l 118 (437)
|||+++.++.++++++++++++.+ .+..+
T Consensus 96 ~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (633)
T TIGR00805 96 HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLF 175 (633)
T ss_pred CcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhh
Confidence 999999999999999999998763 13456
Q ss_pred eeee------------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCc-----------------
Q 047673 119 ILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGW----------------- 168 (437)
Q Consensus 119 ~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~----------------- 168 (437)
+++| ...+++.|++ +++|+++.+++..+..+|.++|+++++.+.+...++
T Consensus 176 ~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprW 255 (633)
T TIGR00805 176 LVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRW 255 (633)
T ss_pred HHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccH
Confidence 6788 6778999999 999999999999999999999999999877543111
Q ss_pred --chHHHHHhhHHHHHHHHHhhccCCCC
Q 047673 169 --GWRISLAMAVAPASILTIGLLFLPET 194 (437)
Q Consensus 169 --~wr~~f~~~~i~~~~~~~~~~~l~es 194 (437)
+|+..|++.+++.++..+.++++|++
T Consensus 256 iGaWwl~Fli~g~l~~l~~v~l~~~p~~ 283 (633)
T TIGR00805 256 IGAWWIGFLICGGVALLTSIPFFFFPKA 283 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 37778888777766655555566654
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.6e-17 Score=153.58 Aligned_cols=313 Identities=14% Similarity=0.045 Sum_probs=178.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHhhhhhh----hhch-hHHHHHHHHHHHHHHHHHhhccccc------eeeeee---
Q 047673 57 CKFDSQLLAAFTSSLYIAGLIASLFASTVTR----AFGR-KASILVGGTTFLTSSAIGGAALDIY------MLILGL--- 122 (437)
Q Consensus 57 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d----r~Gr-r~~~~~~~~~~~~~~~~~~~a~~~~------~l~~~r--- 122 (437)
+|+++.++|.+..+.-+..++..|+.|.++| |+|| |+.++.+.+..+++..+....++.. .+++..
T Consensus 37 ~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~ 116 (473)
T PRK10429 37 VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILW 116 (473)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999 6699 5667778888777766664433221 122111
Q ss_pred ---------cchhhhhhcc--cccccchHHHHHHHHHHHHHHHHHHHhhhhc----cCCCcchHHHHHhhHHHHHHHH-H
Q 047673 123 ---------NAPISLRNGT--PKHIGGFNIGFQVCVATGILSANLLNYGTQK----IKGGWGWRISLAMAVAPASILT-I 186 (437)
Q Consensus 123 ---------~~~~~i~~~~--~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~----~~~~~~wr~~f~~~~i~~~~~~-~ 186 (437)
...++..|.. +++|.+..++...+.++|..+.+.+...+.. .....+|+....+.++..++.. +
T Consensus 117 ~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~ 196 (473)
T PRK10429 117 GMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII 196 (473)
T ss_pred HHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 2446678888 7889999988777777776655544433211 1112368877777665555433 3
Q ss_pred hhccCCCChhHHHhhC--CCHHHHHHHHHHHhCCccHHHHHHH-HHHHhhhhhccccchhhhhccccccccc-ccchHHH
Q 047673 187 GLLFLPETPSSIIQRN--NDYQKAEKIMQIVRGTADVQAELDD-LIRQSSVSKNINHPFKKIIDRKYRPQLL-SESTSLL 262 (437)
Q Consensus 187 ~~~~l~esp~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 262 (437)
..+..+|.++....+. +++....+..+.+.+++........ ...... ......+...+..... +.... +
T Consensus 197 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~------~~~~~~~~~y~~~y~~~~~~~~-~ 269 (473)
T PRK10429 197 TLRNVHEVYSSDNQVSAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIA------SNIINGFAIYYFTYVIGDADLF-P 269 (473)
T ss_pred HHcCceecCCccccccccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHH------HHHHhhheeeEEEEECCCHHHH-H
Confidence 4445677532110000 0011122222222222211111100 000000 0000011111111111 22333 4
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHhhh-cccccccccc
Q 047673 263 MSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSV----MA-TQLVLICVYNAGFTF-LWWPLGWLVP 336 (437)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~-~~~~~~~~~~ 336 (437)
.......+..+++.++.+++.||+|+|+.+..+..+.+++.+.+... .. .....+.....+.+. ...+..+++.
T Consensus 270 ~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ 349 (473)
T PRK10429 270 YYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMV 349 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566668889999999999999999999888777666555444321 11 112222222222222 2234445566
Q ss_pred cccCC-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047673 337 SEIFP-------LEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKA 376 (437)
Q Consensus 337 ~~~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 376 (437)
+|..+ .+..|..+|....+..++..+++.+.|.+.+..|+
T Consensus 350 ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 350 ADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred hhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 77754 33345678888899999999999999999886654
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.1e-17 Score=155.25 Aligned_cols=309 Identities=10% Similarity=0.020 Sum_probs=176.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHhhhhhhh-hchhHHHHHHHHHHHHHHHHHhhcc-ccceeeeee------------
Q 047673 57 CKFDSQLLAAFTSSLYIAGLIASLFASTVTRA-FGRKASILVGGTTFLTSSAIGGAAL-DIYMLILGL------------ 122 (437)
Q Consensus 57 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~a~-~~~~l~~~r------------ 122 (437)
+|++..+.+++.+.+........+++|+++|| +|||+++.++.++.+++.+++++++ +.+.++++|
T Consensus 52 lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~ 131 (500)
T PRK09584 52 LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKA 131 (500)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccC
Confidence 38899999998888776666777899999999 5999999999999999999998875 444455555
Q ss_pred cchhhhhhcc-ccc--ccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHh----hccCCCCh
Q 047673 123 NAPISLRNGT-PKH--IGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIG----LLFLPETP 195 (437)
Q Consensus 123 ~~~~~i~~~~-~~~--r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~----~~~l~esp 195 (437)
...+++.|++ +++ |+.+.++++.+.++|..++|.+++.+.+.. |||+.|.+.++..++.++. ...++|.+
T Consensus 132 ~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~---g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~ 208 (500)
T PRK09584 132 NPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY---GWSVAFALSVVGMLITVVNFAFCQRWVKQYG 208 (500)
T ss_pred CHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHHHHHhHHHhccCC
Confidence 4456788988 543 446788889999999999999999987643 8999999877544443322 22334321
Q ss_pred hHHHhhCCCHHHHHH---------HHHH-HhCCccHHHH----------HHHHHHH---hhhhhcc--------------
Q 047673 196 SSIIQRNNDYQKAEK---------IMQI-VRGTADVQAE----------LDDLIRQ---SSVSKNI-------------- 238 (437)
Q Consensus 196 ~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~----------~~~~~~~---~~~~~~~-------------- 238 (437)
+....+..+...... .... ...+++.... ....... ...++.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f 288 (500)
T PRK09584 209 SKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAMKGAARRKMIVAFILMLEAIIF 288 (500)
T ss_pred CCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 100000000000000 0000 0000000000 0000000 0000000
Q ss_pred ------ccchhhhhccc-ccccccccchHHHHHHHHHHHHHHHHhhhH----HHHhhhcCchhHHHHhHHHHHHHHHHHH
Q 047673 239 ------NHPFKKIIDRK-YRPQLLSESTSLLMSALVTGGIGTVSTILP----MILADKLGRKVLFLLGGIQILVSQVMIG 307 (437)
Q Consensus 239 ------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 307 (437)
.......+... ..+...+.............+..++..++. +++.+|.+..+.+.++.++.+++.+.+.
T Consensus 289 ~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~ 368 (500)
T PRK09584 289 FVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLP 368 (500)
T ss_pred HHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 00000000000 000011111111455555665555665555 5555555566778888888888888776
Q ss_pred HHHHH----------HHHHHHHHHHHhhhcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 047673 308 SVMAT----------QLVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVL 368 (437)
Q Consensus 308 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 368 (437)
..... +.+...+..........|....++.+..|++.||+.+|+......+++.+++.+..
T Consensus 369 ~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 369 LGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65442 12222222222223456666777789999999999999877666666666665554
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=158.31 Aligned_cols=310 Identities=12% Similarity=0.043 Sum_probs=181.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHhhhhhhh----hchh-HHHHHHHHHHHHHHHHHhhccccc------eeeeee---
Q 047673 57 CKFDSQLLAAFTSSLYIAGLIASLFASTVTRA----FGRK-ASILVGGTTFLTSSAIGGAALDIY------MLILGL--- 122 (437)
Q Consensus 57 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~a~~~~------~l~~~r--- 122 (437)
+|+++.+.|.+.++..+..++..|+.|.++|| +||| +.++.+.+..+++.++....+++. .+++..
T Consensus 40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~ 119 (444)
T PRK09669 40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILL 119 (444)
T ss_pred cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 49999999999999999999999999999998 7874 556677777777776665555422 111111
Q ss_pred ---------cchhhhhhcc--cccccchHHHHHHHHHHHHHHHHHHHhhhhccC----CCcchHHHHHhhHHHHHHHHHh
Q 047673 123 ---------NAPISLRNGT--PKHIGGFNIGFQVCVATGILSANLLNYGTQKIK----GGWGWRISLAMAVAPASILTIG 187 (437)
Q Consensus 123 ---------~~~~~i~~~~--~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~----~~~~wr~~f~~~~i~~~~~~~~ 187 (437)
...++.+|+. +++|++..++...+..+|..+++.+...+.... ...+|+..+.+.+++.++..+.
T Consensus 120 ~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~ 199 (444)
T PRK09669 120 SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC 199 (444)
T ss_pred HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 3335678887 688999888888888888887776554433221 1347998888777665554433
Q ss_pred -hccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHH-HHHHHhhhhhccccchhhhhccccccccc-ccchHHHHH
Q 047673 188 -LLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELD-DLIRQSSVSKNINHPFKKIIDRKYRPQLL-SESTSLLMS 264 (437)
Q Consensus 188 -~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 264 (437)
.+..+|.++. ++++ ..+..+..+...+++....... .......... ..... ..+..... +.+.. ...
T Consensus 200 ~~~~~~e~~~~--~~~~-~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~--~~~~~----~y~~~~~~~~~~~~-~~~ 269 (444)
T PRK09669 200 CFFMTKERYTP--EVDN-SSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVT--RGGAT----LYYVNYVLLRPDLA-TLF 269 (444)
T ss_pred HhCCeEEecCC--CCcC-CCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHH--Hhhhh----heeeeeecCCHHHH-HHH
Confidence 4445554211 0111 1112222333333322111110 0000000000 00001 11111111 22223 444
Q ss_pred HHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhh-cccccccccccccCC
Q 047673 265 ALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVM--ATQLVLICVYNAGFTF-LWWPLGWLVPSEIFP 341 (437)
Q Consensus 265 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p 341 (437)
.....+..+++.++.+++.||+|+|+.+..+.++.++....+.... +.....+.....+.+. ...+..+++.+|..+
T Consensus 270 ~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d 349 (444)
T PRK09669 270 LVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVD 349 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5555677788889999999999999998877766554333332221 1112222222222222 334555667777765
Q ss_pred -------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047673 342 -------LEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKA 376 (437)
Q Consensus 342 -------~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 376 (437)
++..|...|..+....++..+++.+.|.+.+..|+
T Consensus 350 ~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 350 YEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred hhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 23346678888889999999999999999887765
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-16 Score=147.41 Aligned_cols=310 Identities=14% Similarity=0.044 Sum_probs=185.3
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhc-hhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cc
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFG-RKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NA 124 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G-rr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~ 124 (437)
|+|..|+|.+.++..+...++++++|.++||++ +||.+.+..++.++........++++.+++.- ..
T Consensus 33 G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~ 112 (400)
T PF03825_consen 33 GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLS 112 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHH
Confidence 899999999999999999999999999999986 67788788888888777777788887655544 11
Q ss_pred hhhhhhcccccccchHHHHHHHHHHHHHHHHHH-HhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCC
Q 047673 125 PISLRNGTPKHIGGFNIGFQVCVATGILSANLL-NYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNN 203 (437)
Q Consensus 125 ~~~i~~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~ 203 (437)
.++..+.. ++++.-.+-.-...++|.+++... +..+....+..+....+++.+...++.....+.+|+.|.....+++
T Consensus 113 dsi~~~~~-~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~~ 191 (400)
T PF03825_consen 113 DSIALSYL-GDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPKRSAKES 191 (400)
T ss_pred HHHHHHHc-ccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCccccccCCC
Confidence 12222222 234445555555666666666443 2222222111123345666555555544455667877621111111
Q ss_pred CH-HHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhccccccccc--ccchHHHHHHHHHHHHHHHHhhhHH
Q 047673 204 DY-QKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQLL--SESTSLLMSALVTGGIGTVSTILPM 280 (437)
Q Consensus 204 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g 280 (437)
.+ ....+..+-+++++...--.......... .....+...+..... +.... +...++..+.+++.-...+
T Consensus 192 ~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~------~~~~~f~~~yl~~~gg~~~~~~-g~~~~l~~~aEi~~f~~~~ 264 (400)
T PF03825_consen 192 VKKLLGLDALKLLKNPRFLVFLLAAFLIGISH------AAYYTFFSIYLQELGGYSGSTI-GILWALGVVAEIPFFFFSG 264 (400)
T ss_pred cccccchHHHHHhcCccHHHHHHHHHHHHHHH------HHHHHHHHHHHHHcccchhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 01 11112222222222111111110000000 001111111111111 22333 6667788889999999999
Q ss_pred HHhhhcCchhHHHHhHHHHHHHHHHHHHHH-HHHH-HHH-HH----HHHHhhhcccccccccccccCChhhhhhHHHHHH
Q 047673 281 ILADKLGRKVLFLLGGIQILVSQVMIGSVM-ATQL-VLI-CV----YNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITV 353 (437)
Q Consensus 281 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~-~~----~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 353 (437)
++.+|+|.++++.++.+..++=..++.... +.+. ... .+ -+..++.. ......++.+..|++.|+++.++.+
T Consensus 265 ~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~-~~a~~~yi~~~~p~~~~at~Q~l~~ 343 (400)
T PF03825_consen 265 RFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLF-HAASVRYIDRIAPPELRATAQGLYS 343 (400)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHhCCccchHHHHHHHH
Confidence 999999999999999999999888887762 2221 111 11 22223222 2333567789999999999999988
Q ss_pred HH-HHHHHHHHHHHHHHHHHhccc
Q 047673 354 AV-GLLFTSLVAQTVLAMLYHFKA 376 (437)
Q Consensus 354 ~~-~~~~~~~~~~~~~~~~~~~g~ 376 (437)
.. ..+|..++..+.|.+.|+.+.
T Consensus 344 ~~~~Glg~~iG~~igG~l~~~~g~ 367 (400)
T PF03825_consen 344 ALSFGLGGAIGSLIGGWLYDAFGA 367 (400)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcc
Confidence 76 568999999999999998773
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-16 Score=151.69 Aligned_cols=333 Identities=10% Similarity=-0.035 Sum_probs=198.7
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhc-----hhHHHHHHHHHHH-HHHHHHhhccccceeee-ee--------
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFG-----RKASILVGGTTFL-TSSAIGGAALDIYMLIL-GL-------- 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G-----rr~~~~~~~~~~~-~~~~~~~~a~~~~~l~~-~r-------- 122 (437)
|+++++++...+...+...+-.+ +|+++||++ ||+.++++.++.+ ++....+..++.....+ ..
T Consensus 57 g~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a 135 (468)
T TIGR00788 57 GLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKA 135 (468)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 89999999999999999999666 999999998 7888888877763 44333444344332222 22
Q ss_pred ----cchhhhhhcccccccc---hHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCCh
Q 047673 123 ----NAPISLRNGTPKHIGG---FNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETP 195 (437)
Q Consensus 123 ----~~~~~i~~~~~~~r~~---~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp 195 (437)
.+.++..|..+++++. ..+.......+|.++++.+++.+.+.. +||..|++.+...++..+..++++|++
T Consensus 136 ~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~---~~~~~f~~~a~l~ll~~~~~~~~~E~~ 212 (468)
T TIGR00788 136 LYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKT---LTRILFLITAALLLLQLFVSNLSKERR 212 (468)
T ss_pred HHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc---CcchHHHHHHHHHHHHHHHHHhccccc
Confidence 6667777777422232 333334445689999999999887554 799999988776666666667778853
Q ss_pred hHHHhhCCCHH-------------HHHHH---HHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhcccccccccccch
Q 047673 196 SSIIQRNNDYQ-------------KAEKI---MQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSEST 259 (437)
Q Consensus 196 ~~~~~~~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (437)
.....+.++.+ ..++. ..+.-+++.......-.... .... .......+.......-.+...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~--~~~~-~~~~~~~f~~~~~~lG~s~~~ 289 (468)
T TIGR00788 213 AFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLS--YANL-PGASGSVFCATTQCLPGGPSF 289 (468)
T ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH--Hhhc-CCCCceeEEEEcccCCCCcch
Confidence 10000100000 00000 00000000000000000000 0000 000000000000111226667
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHH----------HHHH--HHHHHHHHHHhhhc
Q 047673 260 SLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSV----------MATQ--LVLICVYNAGFTFL 327 (437)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~--~~~~~~~~~~~~~~ 327 (437)
. +......+++.+++..+.+++.+|++.|+++.++.++.+++.+..... .... .....+-..+.+..
T Consensus 290 ~-G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~ 368 (468)
T TIGR00788 290 S-GMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLK 368 (468)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHH
Confidence 7 888888899999999999999999999999998888887766443211 0111 11222333334444
Q ss_pred ccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cchhhHHHHHHHHHH---HHhhhcccc
Q 047673 328 WWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFK-----AGVFFFFGGWLIAMT---TFVHFFLPE 399 (437)
Q Consensus 328 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~---~~~~~~~~~ 399 (437)
..+. ..++.+..|++.+++.+++.+.+.+++..+++.+.+.+.+..| +..++....++.+.. +....++|+
T Consensus 369 ~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 369 FMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred HccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4454 5566799999999999999999999999999998898888877 554444444333332 223335565
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.9e-16 Score=144.90 Aligned_cols=339 Identities=16% Similarity=0.055 Sum_probs=201.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHH-HHHHHHHHHHHHhhc-cccceeeeee-------------cch
Q 047673 61 SQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILV-GGTTFLTSSAIGGAA-LDIYMLILGL-------------NAP 125 (437)
Q Consensus 61 ~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~-~~~~~~~~~~~~~~a-~~~~~l~~~r-------------~~~ 125 (437)
.+..++..++..+..++..|+.|.++|+-|+||.++. ..++..+++.+..+. ++.+.+...- ...
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999987776554 555555666666664 3333222221 566
Q ss_pred hhhhhcc-cccc--------------------------cchHHHHHHHHHHHHHHHHHHHhhhhccCC-----CcchHHH
Q 047673 126 ISLRNGT-PKHI--------------------------GGFNIGFQVCVATGILSANLLNYGTQKIKG-----GWGWRIS 173 (437)
Q Consensus 126 ~~i~~~~-~~~r--------------------------~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~-----~~~wr~~ 173 (437)
+++.|.. ++++ ++..+.-.....+|.++.-++...+....+ .++-|..
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~ 228 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA 228 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 7888999 8877 899999888888888888777665533222 1245788
Q ss_pred HHhhHHH-HHHHHHhhccCCCChhHHHhhCC-C-----HHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhh
Q 047673 174 LAMAVAP-ASILTIGLLFLPETPSSIIQRNN-D-----YQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKII 246 (437)
Q Consensus 174 f~~~~i~-~~~~~~~~~~l~esp~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (437)
+.+.++. .+..+..++++||.|+....+.. + .++..+..++.++.++...-+.....-.+.- ........++
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~-~ti~~~~~i~ 307 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGV-NTIISFAGIY 307 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 8776655 44456667788887642111111 0 0111122222222211111000000000000 0000001111
Q ss_pred cccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCch--hHHHHhHHHHHH-HHHHHH-H------HHHHH-HH
Q 047673 247 DRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLGRK--VLFLLGGIQILV-SQVMIG-S------VMATQ-LV 315 (437)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~-~~~~~~-~------~~~~~-~~ 315 (437)
... ..-++..+. ........+..++|+++.+++.||+|.| +++....+...+ ....+. . ..+.+ ..
T Consensus 308 a~~--~lg~s~~~l-~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~ 384 (477)
T PF11700_consen 308 ATE--VLGMSTTQL-IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFW 384 (477)
T ss_pred HHH--hcCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHH
Confidence 100 001144555 6778888999999999999999999998 776666555422 222222 0 11111 22
Q ss_pred HHHHHHHHhhhcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHhh
Q 047673 316 LICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFK-AGVFFFFGGWLIAMTTFVH 394 (437)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~ 394 (437)
...++...+..+..+...++.+|+.|+++.+..+|++...+...+.++|.+++.+.+..+ ....+....+.++.++++.
T Consensus 385 ~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll 464 (477)
T PF11700_consen 385 VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL 464 (477)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 222222222234456667788999999999999999999999999999999999999887 4444444444555555555
Q ss_pred hccccCCCC
Q 047673 395 FFLPETKNV 403 (437)
Q Consensus 395 ~~~~~~~~~ 403 (437)
..++.++++
T Consensus 465 ~~v~~~~g~ 473 (477)
T PF11700_consen 465 FFVDVEKGR 473 (477)
T ss_pred hhccchhhh
Confidence 656554443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.8e-16 Score=145.60 Aligned_cols=310 Identities=11% Similarity=0.003 Sum_probs=175.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHhhhhhhh----hchhH-HHHHHHHHHHHHHHHHhhccccc------eeeee----
Q 047673 57 CKFDSQLLAAFTSSLYIAGLIASLFASTVTRA----FGRKA-SILVGGTTFLTSSAIGGAALDIY------MLILG---- 121 (437)
Q Consensus 57 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~a~~~~------~l~~~---- 121 (437)
+|+++...|.+..+.-+--++..|+.|.++|| +|||| .++++.+..+++.+++-..++.. .+.+.
T Consensus 40 ~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~ 119 (460)
T PRK11462 40 FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLL 119 (460)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 48999999999999999999999999999995 79865 45567778887777665555321 11111
Q ss_pred e--------cchhhhhhcc--cccccchHHHHHHHHHHHHHHHHHHHhhhhccCC----CcchHHHHHhhHHHHHHHHH-
Q 047673 122 L--------NAPISLRNGT--PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKG----GWGWRISLAMAVAPASILTI- 186 (437)
Q Consensus 122 r--------~~~~~i~~~~--~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~----~~~wr~~f~~~~i~~~~~~~- 186 (437)
+ .-.++..|.. +++|++..++...+..+|..+++.+...+....+ ..+|+....+.+++.++...
T Consensus 120 ~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 120 TLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 1 3446678888 8899999999999999988888777554433221 13688777666665555443
Q ss_pred hhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHHH-HHHHhhhhhccccchhhhhcccccccccccchHHHHHH
Q 047673 187 GLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDD-LIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSA 265 (437)
Q Consensus 187 ~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (437)
.....+|.++. +.+ +....+.++...+++........ ......... .......+..+. ..+.+.. ....
T Consensus 200 ~~~~~kE~~~~---~~~-~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~--~~~~~~y~~~y~---~g~~~~~-~~~l 269 (460)
T PRK11462 200 CFFTTKERVEA---PPT-TTSMREDLRDIWQNDQWRIVGLLTIFNILAVCV--RGGAMMYYVTWI---LGTPEVF-VAFL 269 (460)
T ss_pred HHhcceeccCC---Ccc-CCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHH--HHhHhhhhhhhh---cCChHHH-HHHH
Confidence 33445654321 111 11122223333332211111000 000000000 000001111111 1122223 4556
Q ss_pred HHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhh-cccccccccccccCC-
Q 047673 266 LVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ--LVLICVYNAGFTF-LWWPLGWLVPSEIFP- 341 (437)
Q Consensus 266 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~p- 341 (437)
....+..+++.+++++++||+++|+.+..+..+..+..+++.+..... ......+..+.+. ...++.+.+.+|..+
T Consensus 270 ~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~ 349 (460)
T PRK11462 270 TTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDY 349 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 677788889999999999999999887655444433333332222211 1111112222222 223344555566554
Q ss_pred ------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047673 342 ------LEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKA 376 (437)
Q Consensus 342 ------~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 376 (437)
.+..|...+.......++..+++.+.|.+++..|+
T Consensus 350 ~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 350 GEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred hHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22234445666788899999999999988876543
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-15 Score=138.45 Aligned_cols=314 Identities=17% Similarity=0.102 Sum_probs=199.9
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHHHhhhhhhh----hchhH-HHHHHHHHHHHHHHHHhhccccc----eeee------
Q 047673 56 YCKFDSQLLAAFTSSLYIAGLIASLFASTVTRA----FGRKA-SILVGGTTFLTSSAIGGAALDIY----MLIL------ 120 (437)
Q Consensus 56 ~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~a~~~~----~l~~------ 120 (437)
.+|+++...|.+..+.-+--++..|+.|.+.|| +||+| .++.+.+..++.+.++-.++++. ..++
T Consensus 42 v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l 121 (467)
T COG2211 42 VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYML 121 (467)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHH
Confidence 359999999999999999999999999999995 78754 66778899999999888887522 1111
Q ss_pred ---ee-----cchhhhhhcc--cccccchHHHHHHHHHHHHHHHHHHHhhhhccCC----CcchHHHHHhhHHHHHHHHH
Q 047673 121 ---GL-----NAPISLRNGT--PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKG----GWGWRISLAMAVAPASILTI 186 (437)
Q Consensus 121 ---~r-----~~~~~i~~~~--~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~----~~~wr~~f~~~~i~~~~~~~ 186 (437)
+. .-.++..|.+ ++||.+..++-+.+..+|.++...+...+....+ ..||+...++.++++++..+
T Consensus 122 ~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l 201 (467)
T COG2211 122 LGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLL 201 (467)
T ss_pred HHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 11 3446678888 8999999999999999997777666655544333 34788887777766666555
Q ss_pred hh-ccCCCChhHHHhhCC--CHHHHHHHHHHHhCCccHHHHHH-HHHHHhhhhhccccchhhhhccccccccc-ccchHH
Q 047673 187 GL-LFLPETPSSIIQRNN--DYQKAEKIMQIVRGTADVQAELD-DLIRQSSVSKNINHPFKKIIDRKYRPQLL-SESTSL 261 (437)
Q Consensus 187 ~~-~~l~esp~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 261 (437)
.. +..+|.+... .+.+ .+.+..+......+++....... .+..... ...+.-....+....+ +.+...
T Consensus 202 ~~~~~v~ER~~~~-~~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~------~~i~~s~~~yy~~y~lg~~~l~~ 274 (467)
T COG2211 202 FCFFNVKERVVET-QPTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIA------FNIRGSIMVYYVTYVLGDPELFA 274 (467)
T ss_pred HHHHHhhcccCcc-ccCcccccccHHHHHHHHHccchHHHHHHHHHHHHHH------HHHHhhhhheeEEEEcCChHHHH
Confidence 44 4466654210 0011 01111111222222221111111 1100000 0111111112222222 222331
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhh-cccccccccccc
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ--LVLICVYNAGFTF-LWWPLGWLVPSE 338 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~ 338 (437)
...........+++.++..++.+|+|+|+++..+.++.+++.+++.+..... .+.+.....+.+. ...++.+++++|
T Consensus 275 ~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d 354 (467)
T COG2211 275 YLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVAD 354 (467)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcc
Confidence 4566666667777799999999999999999999999999998888877433 2222222323332 345677888888
Q ss_pred cCC-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047673 339 IFP-------LEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKA 376 (437)
Q Consensus 339 ~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 376 (437)
... .+.-|...|...++..+|.+++..+.|..++..|+
T Consensus 355 ~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 355 TVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred hhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 764 23346778888899999999999999999887764
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.9e-15 Score=138.25 Aligned_cols=308 Identities=10% Similarity=0.043 Sum_probs=180.2
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhh-chhHHHHHHHHHHHHHHHHHhhccc-cceeee--ee----------c
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAF-GRKASILVGGTTFLTSSAIGGAALD-IYMLIL--GL----------N 123 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~a~~-~~~l~~--~r----------~ 123 (437)
|+++.+.+.+.+.+.....++.+++|+++||+ ||||++.++.++..++.++.+...+ ...+.+ .+ .
T Consensus 41 gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~ 120 (493)
T PRK15462 41 KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSN 120 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhccccccc
Confidence 88999999999999999999999999999999 9999999999999999877765432 111111 11 4
Q ss_pred chhhhhhcc-cc--cccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhcc----CCCChh
Q 047673 124 APISLRNGT-PK--HIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLF----LPETPS 196 (437)
Q Consensus 124 ~~~~i~~~~-~~--~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~----l~esp~ 196 (437)
..++++|.+ ++ +|..+.++...+.++|..++|.+.+.+.+. +||++.|.++++..++.++.++. +++...
T Consensus 121 ~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~---~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~ 197 (493)
T PRK15462 121 VSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE---YSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRG 197 (493)
T ss_pred HHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh---hChHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Confidence 567889999 54 689999999999999999999999998754 48999999876654444433322 112100
Q ss_pred HHHhhCCCHHHHHH---------------HHH-HHhCCccHHHH-----------HHHHHH-Hh-hhhhc----------
Q 047673 197 SIIQRNNDYQKAEK---------------IMQ-IVRGTADVQAE-----------LDDLIR-QS-SVSKN---------- 237 (437)
Q Consensus 197 ~~~~~~~~~~~~~~---------------~~~-~~~~~~~~~~~-----------~~~~~~-~~-~~~~~---------- 237 (437)
. ++++.+++... .+. ....++..... +..... .. .+++.
T Consensus 198 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~ 275 (493)
T PRK15462 198 V--NKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTF 275 (493)
T ss_pred C--CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHH
Confidence 0 00000000000 000 00000000000 000000 00 00000
Q ss_pred ----------cccchhhhhccccc-ccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCc--hh-----HHHHhHHHH
Q 047673 238 ----------INHPFKKIIDRKYR-PQLLSESTSLLMSALVTGGIGTVSTILPMILADKLGR--KV-----LFLLGGIQI 299 (437)
Q Consensus 238 ----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--~~-----~~~~~~~~~ 299 (437)
+..+-..++..++. +.+.+-+....+..++..+.-++.+++..++=.|..| |. =+.++++++
T Consensus 276 ~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~ 355 (493)
T PRK15462 276 FSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLM 355 (493)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 00011111211111 1111211222566777788788888887777666532 21 256777777
Q ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHhhhcccccccccccccCChhhhhhHHHHHHHHH-HHHHHHHHHHHH
Q 047673 300 LVSQVMIGSVMAT----------QLVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVG-LLFTSLVAQTVL 368 (437)
Q Consensus 300 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~-~~~~~~~~~~~~ 368 (437)
+++.+.+...... +++...++....-....|+..+.++++.|++.++..+|...... .+++.+++.+.+
T Consensus 356 g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~ 435 (493)
T PRK15462 356 SAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIAD 435 (493)
T ss_pred HHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666543221 12222222222234678888888899999999999999986643 566666666555
Q ss_pred HH
Q 047673 369 AM 370 (437)
Q Consensus 369 ~~ 370 (437)
..
T Consensus 436 ~~ 437 (493)
T PRK15462 436 QT 437 (493)
T ss_pred Hh
Confidence 44
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-15 Score=132.02 Aligned_cols=372 Identities=12% Similarity=0.029 Sum_probs=222.8
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHh
Q 047673 3 VFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFA 82 (437)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 82 (437)
+++|.++++.++-.+..++.-.-++++. .+.++|+ + +....-|+.-+|++.+....+++
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~---n~~~~~Y-----------------g-s~~~~~wlsmIym~v~vp~gf~~ 99 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPIN---NYVNSFY-----------------G-SSSAADWLSMIYMVVSVPFGFAA 99 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHH---HHHHHHh-----------------c-chHHHHHHHHHHHHHHHHHhhHH
Confidence 5789999999998888877766665553 5555553 5 66778899999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHhhccc------cc--eeeeee-----------cchhhhh-hcc-cccccchHH
Q 047673 83 STVTRAFGRKASILVGGTTFLTSSAIGGAALD------IY--MLILGL-----------NAPISLR-NGT-PKHIGGFNI 141 (437)
Q Consensus 83 g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~------~~--~l~~~r-----------~~~~~i~-~~~-~~~r~~~~~ 141 (437)
-|+.||+|-|...+++..+.++|..+-..+.. ++ ....+. ..++-++ -|+ +++|..+..
T Consensus 100 mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~ 179 (480)
T KOG2563|consen 100 MWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATV 179 (480)
T ss_pred HHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhh
Confidence 99999999999999999999999999877632 22 222333 3333444 455 999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccC---CCcchHH--HHHhhHHHHHHHHH-hhccCCC---ChhHHHhhCCCHHHHHHHH
Q 047673 142 GFQVCVATGILSANLLNYGTQKIK---GGWGWRI--SLAMAVAPASILTI-GLLFLPE---TPSSIIQRNNDYQKAEKIM 212 (437)
Q Consensus 142 ~~~~~~~~G~~~~~~~~~~l~~~~---~~~~wr~--~f~~~~i~~~~~~~-~~~~l~e---sp~~~~~~~~~~~~~~~~~ 212 (437)
+-.++..+|.+++.++...+.... ++..|-. .|+....++.+.+. ..+..+| +|....+...++....+.+
T Consensus 180 ~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si 259 (480)
T KOG2563|consen 180 LGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSI 259 (480)
T ss_pred HHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHH
Confidence 999999999999999988887654 2345654 34433333222222 2233333 3321111111000112222
Q ss_pred HHHhCCccHHHHHHHHHHHhhhhhccccchhhhhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchh-H
Q 047673 213 QIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKV-L 291 (437)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~ 291 (437)
++.-++....-...... ..-.....+..++.........+...+ ++......+.+++++.+.|.+.||.+.-+ .
T Consensus 260 ~~~~~n~~F~il~~~yg----i~~g~F~~l~~~l~~~l~~sgY~~~~a-G~ig~l~iv~Gmlga~~~gii~Dktk~fk~~ 334 (480)
T KOG2563|consen 260 KSCFKNRQFIILAICYG----IGLGLFNSLSTLLNLALCPSGYEGVFA-GYIGALMIVAGMLGALASGIIADKTKKFKLT 334 (480)
T ss_pred HHHHcCccHHHHHHHHh----hhHHHHHHHHHHhhhccccccCCcccc-chhHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 22222111100000000 000000111111111111111133455 88899999999999999999999987654 3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 047673 292 FLLGGIQILVSQVMIGSVMATQ-----LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQT 366 (437)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 366 (437)
+++......++...+....... +...+.....++.+..|+..-+-.|..-|..-++..|+.+..+++.+.+...+
T Consensus 335 ~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~ 414 (480)
T KOG2563|consen 335 TLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFI 414 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHH
Confidence 4444444333322222221111 33334444445557778777777776655666888999999999999999999
Q ss_pred HHHHHHhcc----cchhhHHHHHHHHHHHHhhhccccC
Q 047673 367 VLAMLYHFK----AGVFFFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 367 ~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (437)
.+...+..+ +....+......+.......+.++.
T Consensus 415 ~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~ 452 (480)
T KOG2563|consen 415 MGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPD 452 (480)
T ss_pred HHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence 888888776 4444444444444444444444443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-16 Score=146.59 Aligned_cols=313 Identities=14% Similarity=0.110 Sum_probs=200.5
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHhhhhhh----hhchhHH-HHHHHHHHHHHHHHHhhc-c-ccc------eeeeee-
Q 047673 57 CKFDSQLLAAFTSSLYIAGLIASLFASTVTR----AFGRKAS-ILVGGTTFLTSSAIGGAA-L-DIY------MLILGL- 122 (437)
Q Consensus 57 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~-~~~~~~~~~~~~~~~~~a-~-~~~------~l~~~r- 122 (437)
+|+++...|.+..+..+..++..|+.|.++| |+||||. ++++....+++.++.... + +.. .+.+..
T Consensus 32 ~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~ 111 (428)
T PF13347_consen 32 LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYI 111 (428)
T ss_pred cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHH
Confidence 3899999999999999999999999999999 8997665 556888888888877766 4 111 112111
Q ss_pred -----------cchhhhhhcc--cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCC----cchHHHHHhhHHHHHHHH
Q 047673 123 -----------NAPISLRNGT--PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGG----WGWRISLAMAVAPASILT 185 (437)
Q Consensus 123 -----------~~~~~i~~~~--~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~----~~wr~~f~~~~i~~~~~~ 185 (437)
...++..|.. +++|.+..+.-..+..+|.++...+...+.+..+. .+|++...+.+++.++..
T Consensus 112 l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~ 191 (428)
T PF13347_consen 112 LFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFF 191 (428)
T ss_pred HHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHh
Confidence 4456788888 67899999999999999987777666665543332 279999888776666655
Q ss_pred Hh-hccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhccccccccc-ccchHHHH
Q 047673 186 IG-LLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQLL-SESTSLLM 263 (437)
Q Consensus 186 ~~-~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 263 (437)
+. .+..+|.++...++++ +.+..+..+.+.+++.............. . ..........+..... +.+.. ..
T Consensus 192 ~i~~~~~ke~~~~~~~~~~-~~~~~~~~~~~~~nr~~~~l~~~~~~~~~-~----~~~~~~~~~y~~~~vl~~~~~~-~~ 264 (428)
T PF13347_consen 192 LITFFFVKERSVEVTEQEK-KISLRDSLRSLFRNRPFRILLLAFFLQWL-A----FALMNTFLPYYFTYVLGNEGLI-SI 264 (428)
T ss_pred hhhhheeeecccccccccc-ccccccchhhhcccchHHHHHHHHHHHHh-h----hhhhhhHHHHHHHHHhcCchhh-HH
Confidence 44 5567772211111111 11222223333332221111100000000 0 0000000011111111 33344 66
Q ss_pred HHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhh-cccccccccccccC
Q 047673 264 SALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVM--ATQLVLICVYNAGFTF-LWWPLGWLVPSEIF 340 (437)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 340 (437)
......+..+++.++.++++||+|+|+.+..+..+.+++.+.+.+.. +.....+.....+.+. ......+++.+|..
T Consensus 265 ~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~i 344 (428)
T PF13347_consen 265 FMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVI 344 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccch
Confidence 77778889999999999999999999999999999999888887776 3333333333333332 33455667778877
Q ss_pred Ch-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047673 341 PL-------EIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKA 376 (437)
Q Consensus 341 p~-------~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 376 (437)
+. +..|...|+.+....++..+++.+.+.+.+..|+
T Consensus 345 d~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 345 DYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred hhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 63 3357888899999999999999999988876653
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.4e-15 Score=133.24 Aligned_cols=340 Identities=14% Similarity=0.080 Sum_probs=190.0
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHH--HHHHHH-Hhhc----cccc-eeeeee-------
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTF--LTSSAI-GGAA----LDIY-MLILGL------- 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~--~~~~~~-~~~a----~~~~-~l~~~r------- 122 (437)
|+|.+++|.+.++..+...+.+|+.|.++||+|.||-++....+. ..+... ..+. .|.+ ..+++-
T Consensus 39 GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f 118 (412)
T PF01306_consen 39 GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVF 118 (412)
T ss_dssp ---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999776554332222 222222 2222 3332 111111
Q ss_pred cchhhhhhcc----cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhc-cCCCChhH
Q 047673 123 NAPISLRNGT----PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLL-FLPETPSS 197 (437)
Q Consensus 123 ~~~~~i~~~~----~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~-~l~esp~~ 197 (437)
....-+.|-+ .++.+.-.|-.-+..++|.+++..++|.+.+. +-+..|+++...+++..++.+ .-|+.++.
T Consensus 119 ~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i----~p~~~fwi~s~~~~il~lll~~~~~~~~~~ 194 (412)
T PF01306_consen 119 NAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFNI----NPNIIFWIASAAAIILLLLLLLLKPDVPPQ 194 (412)
T ss_dssp TTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHSS---SSSS
T ss_pred cccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeeee----CccHHHHHHHHHHHHHHHHHHHcCCcCchh
Confidence 1111122322 34445566667788889999999999888754 345777876665555444433 33333221
Q ss_pred HHhhC-CCHHHH---HHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhcccccccccccchHHHHHHHHHHHHHH
Q 047673 198 IIQRN-NDYQKA---EKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIGT 273 (437)
Q Consensus 198 ~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (437)
...++ ++.++. .+...++.+.++...-..-.......-......+...++..+...-.+.... +++.+...+.++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~-G~l~s~~v~~E~ 273 (412)
T PF01306_consen 195 AEVADALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMY-GYLWSVQVFLEA 273 (412)
T ss_dssp S-SSTTSSS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHH-HHHHHHHHHHHH
T ss_pred hhhhcccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHH-hHHHHHHHHHHH
Confidence 11111 101111 1111222222221111110000000000000001111111111111133334 788888899999
Q ss_pred HHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccccccccccCChhhhhhHHHHH
Q 047673 274 VSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFLW-WPLGWLVPSEIFPLEIRSAGKSIT 352 (437)
Q Consensus 274 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~r~~~~g~~ 352 (437)
+...+..++.+|+|.|+.++++..++.+=....++..+...+...=..-+..... .....-++++.+|++..++...+.
T Consensus 274 ~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~ 353 (412)
T PF01306_consen 274 LMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVG 353 (412)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Confidence 9999999999999999999999999999988888777665333332222322221 112245678999999989998886
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHHhhhccccCCC
Q 047673 353 -VAVGLLFTSLVAQTVLAMLYHFKAG-VFFFFGGWLIAMTTFVHFFLPETKN 402 (437)
Q Consensus 353 -~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (437)
+...+++..+.+++.|.+.|+.|+. .+++.+.+.+...++..+.++++++
T Consensus 354 ~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 354 FQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 4677899999999999999999954 6777777666666666666654433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.4e-15 Score=131.20 Aligned_cols=336 Identities=10% Similarity=-0.030 Sum_probs=200.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHH-HHHHHHHHHHHHHHHhhccc--cceeeeee-------------c
Q 047673 60 DSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKAS-ILVGGTTFLTSSAIGGAALD--IYMLILGL-------------N 123 (437)
Q Consensus 60 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~-~~~~~~~~~~~~~~~~~a~~--~~~l~~~r-------------~ 123 (437)
+.+..|...++..+..++.+|+.|.++|+.|+||. +-....+..++..+..++++ ++.+.+.- .
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 56788999999999999999999999999996665 55566666666777777765 54444333 5
Q ss_pred chhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccC---------------CCcchHHHHHhhHHHHHH-HHH
Q 047673 124 APISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIK---------------GGWGWRISLAMAVAPASI-LTI 186 (437)
Q Consensus 124 ~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~---------------~~~~wr~~f~~~~i~~~~-~~~ 186 (437)
-.+++.+.. +++-++..+.-.....+|+++.-+......... +...=|..+.+.++--++ .+.
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 567888888 888888887776666677666555432211111 123567777776654444 455
Q ss_pred hhccCCCChhHH-----HhhCCCHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhcccccccccccchHH
Q 047673 187 GLLFLPETPSSI-----IQRNNDYQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSL 261 (437)
Q Consensus 187 ~~~~l~esp~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (437)
+++..|+.++-. .-++. .++..+..++++++++...-+.....-.+.-. ........+... ..-++..+.
T Consensus 216 m~~~v~~~~~~~~~~~~~l~~g-~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~-til~~~~~fg~~--~~gls~~~l- 290 (438)
T COG2270 216 MILNVHDAEKISSPPPTALRNG-FKELKSTFKEIRGRKNLVLFLIARFFYIDGVN-TILAMGGVFGAA--DLGLSSTEL- 290 (438)
T ss_pred HHhcccccccccccchHHHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHhhHH-HHHHHHHHHHHH--HcCccHHHH-
Confidence 666666654210 00000 11222222333222211110000000000000 000000111000 001134444
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccccccccccccC
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFT-FLWWPLGWLVPSEIF 340 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 340 (437)
........+..++++++.|++.||+|.|+++..+.++..+..+...+.........+....+.. .+......++..+++
T Consensus 291 ll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lv 370 (438)
T COG2270 291 LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLV 370 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhC
Confidence 6777778899999999999999999999988888877766655544443332222332222333 334455677889999
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc-chhhHHHHHHHHHHHHhhhccccC
Q 047673 341 PLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKA-GVFFFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 341 p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~ 400 (437)
|+++-++.+|+++..++..+..+|..++.+.+..+- ..-....++.+..+.+....+|..
T Consensus 371 p~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 371 PKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred CCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 999999999999999999999999999999988773 333333334444455555555544
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.1e-15 Score=139.70 Aligned_cols=309 Identities=11% Similarity=-0.001 Sum_probs=162.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhh----chhHHH-HHHHHHHHHHHHHHhhcc-----ccc--eeeee---
Q 047673 57 CKFDSQLLAAFTSSLYIAGLIASLFASTVTRAF----GRKASI-LVGGTTFLTSSAIGGAAL-----DIY--MLILG--- 121 (437)
Q Consensus 57 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~----Grr~~~-~~~~~~~~~~~~~~~~a~-----~~~--~l~~~--- 121 (437)
+|+++.++|.+.+...+..++..++.|+++||. ||||.. ..+.+...+.+++....+ +.. .+++.
T Consensus 39 ~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (448)
T PRK09848 39 AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMG 118 (448)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHH
Confidence 489999999999999999999999999999996 777744 555555554444432111 110 01111
Q ss_pred -e--------cchhhhhhcc--cccccchHHHHHHHHH-----HHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHH-H
Q 047673 122 -L--------NAPISLRNGT--PKHIGGFNIGFQVCVA-----TGILSANLLNYGTQKIKGGWGWRISLAMAVAPASI-L 184 (437)
Q Consensus 122 -r--------~~~~~i~~~~--~~~r~~~~~~~~~~~~-----~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~-~ 184 (437)
. ...++..+.. +++|.+..+....+.+ +|..++|.++........ .+|.....+.++.+++ .
T Consensus 119 ~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~-~~~~~~~~~~~v~~~~~~ 197 (448)
T PRK09848 119 LGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMV-SVYHFWTIVLAIAGMVLY 197 (448)
T ss_pred HHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh-hhHHHHHHHHHHHHHHHH
Confidence 1 2234445666 5678887776654433 455556665543321100 1222222222223222 2
Q ss_pred HHhhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHH-HHHHHhhhhhccccchhhhhccccccccccc-chHHH
Q 047673 185 TIGLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELD-DLIRQSSVSKNINHPFKKIIDRKYRPQLLSE-STSLL 262 (437)
Q Consensus 185 ~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 262 (437)
++.....||+++. +.+ ++...+..+.+.+++....... .......... .... ...+.....+. .....
T Consensus 198 ~~~~~~~~e~~~~---~~~-~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~g~~~~~~~ 267 (448)
T PRK09848 198 FICFKSTRENVVR---IVA-QPSLKISLQTLKRNRPLFMLCIGALCVLISTFA--VSAS----SLFYVRYVLNDTGLFTV 267 (448)
T ss_pred HHHHcCcEeccCC---Ccc-CCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHH--Hhhh----heeeEeeecCChHHHHH
Confidence 2334456765421 111 1111222233333322111110 0000000000 0000 11111111111 12203
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhh-ccccccccccccc
Q 047673 263 MSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMAT--QLVLICVYNAGFTF-LWWPLGWLVPSEI 339 (437)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 339 (437)
.......+..+++.++.+++.||+|+|+.+..+.++..++.+.+.+.... ..........+.+. ...+...++.+|.
T Consensus 268 ~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~ 347 (448)
T PRK09848 268 LVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADT 347 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333456678899999999999999999999988877777666543321 12222122222222 2233445555676
Q ss_pred CChh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047673 340 FPLE-------IRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKA 376 (437)
Q Consensus 340 ~p~~-------~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 376 (437)
.|.+ .+|...|+.+....++..+++.+.+.+.+..|+
T Consensus 348 ~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 348 VEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred hhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6543 458889999999999999999999988876553
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6e-16 Score=128.92 Aligned_cols=334 Identities=12% Similarity=0.064 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhh
Q 047673 4 FVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFAS 83 (437)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g 83 (437)
++...++..|+-.|-..++.-..+ .++.+| +.|.+++.++..++.+++.....+.+.++|
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~------alq~~f--------------k~d~ni~~akftLlYsvYSwPNvVlcffgG 100 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPG------ALQIDF--------------KLDSNIEYAKFTLLYSVYSWPNVVLCFFGG 100 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCch------hhhhhh--------------hcccccceeeeeeeeeeccCCCEEEeeecc
Confidence 445566666776666666654433 345555 344578889999999999999999999999
Q ss_pred hhhhh-hchhHHHHHHHHHHHHHHHHHh---hccccceeeeee------------cchhhhhhcc-cccccchHHHHHHH
Q 047673 84 TVTRA-FGRKASILVGGTTFLTSSAIGG---AALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVC 146 (437)
Q Consensus 84 ~l~dr-~Grr~~~~~~~~~~~~~~~~~~---~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~ 146 (437)
++.|| +|-|..-++-++...++.+.++ .++.+|.+.++| .-..|...|+ .|+.+.++|+....
T Consensus 101 flidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSv 180 (459)
T KOG4686|consen 101 FLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSV 180 (459)
T ss_pred eeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHH
Confidence 99997 6888877777777777777765 468999999999 4557788899 99999999999988
Q ss_pred HHHHHHHHHHHHhhhhccCC----CcchH---HHHHhhHHHH---HHHHHhhccCCCChhHHHhhCCCHHHHHHHHHHHh
Q 047673 147 VATGILSANLLNYGTQKIKG----GWGWR---ISLAMAVAPA---SILTIGLLFLPETPSSIIQRNNDYQKAEKIMQIVR 216 (437)
Q Consensus 147 ~~~G~~~~~~~~~~l~~~~~----~~~wr---~~f~~~~i~~---~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~ 216 (437)
.-+|+.+-..+..++.+..+ ..|-. ....+....+ ++.....-+. ++++++.+++-+
T Consensus 181 AR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~-------------D~rAerilh~e~ 247 (459)
T KOG4686|consen 181 ARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLS-------------DDRAERILHLEE 247 (459)
T ss_pred HHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------------hhHHHHHHhhhc
Confidence 88888766655555543221 01110 0011111111 1111111111 223333322221
Q ss_pred CCccHHHHHHHHH-------------HHhhhhhccccchhh-hhcccccccccccchHHHHHHHHHHHHHHHHhhhHHHH
Q 047673 217 GTADVQAELDDLI-------------RQSSVSKNINHPFKK-IIDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPMIL 282 (437)
Q Consensus 217 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 282 (437)
+.......+.+.. ..-...-.+.....+ ++..++ -++...+ +.+.+.......+.+++.|.+
T Consensus 248 g~~Ge~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rf---GlS~~~a-~~i~s~vy~Isav~spvfg~i 323 (459)
T KOG4686|consen 248 GFLGEEPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRF---GLSAVSA-GNILSTVYGISAVLSPVFGAI 323 (459)
T ss_pred CcccCCcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhh---CCChhhc-cchhhhhhhhhhhhhhhHHHh
Confidence 1110000000000 000000000000000 011111 1155555 667777777888999999999
Q ss_pred hhhcCchhHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCChhhhhhHHHHHHHHHHHHHH
Q 047673 283 ADKLGRKVLFLLGGIQ-ILVSQVMIGSVMATQLVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTS 361 (437)
Q Consensus 283 ~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~ 361 (437)
+||+|++...+.+..+ ...+-..+.+....+....++.+..+... ....|..++.+.|+++.|++.|.++.+.++|-.
T Consensus 324 ~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsysll-AcslWP~va~~vpE~qLGTaygf~qsIqNLgla 402 (459)
T KOG4686|consen 324 SDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFLGLSYSLL-ACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLA 402 (459)
T ss_pred HhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhhHHHH-HHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhh
Confidence 9999999766554443 33444444444444444444444444332 222355667888999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 047673 362 LVAQTVLAMLYHFK 375 (437)
Q Consensus 362 ~~~~~~~~~~~~~g 375 (437)
+.|.+.|.+.|+.|
T Consensus 403 ~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 403 FIPIIAGFIADGDG 416 (459)
T ss_pred HHhhhhheeecCCC
Confidence 99999999998776
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=133.13 Aligned_cols=157 Identities=12% Similarity=0.019 Sum_probs=114.0
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHH---Hhhccccceeeeee------------
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAI---GGAALDIYMLILGL------------ 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~---~~~a~~~~~l~~~r------------ 122 (437)
|++..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+. ...+++...++++|
T Consensus 282 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 361 (490)
T PRK10642 282 HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTG 361 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 677778888888889999999999999999999999988877654433322 22334555555555
Q ss_pred cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhh
Q 047673 123 NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQR 201 (437)
Q Consensus 123 ~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~ 201 (437)
....++.|.+ ++.|+...+.......++..++|.+.+.+.+..+ +|+.+++...+.+++.++..+++||+|+|+.++
T Consensus 362 ~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~--~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~ 439 (490)
T PRK10642 362 VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQ--NLMMPAYYLMVVAVIGLITGVTMKETANRPLKG 439 (490)
T ss_pred HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Confidence 3456678899 9999999997433344555677777776654332 578777766667777666667789999987754
Q ss_pred -----CCCHHHHHHHHHHHhC
Q 047673 202 -----NNDYQKAEKIMQIVRG 217 (437)
Q Consensus 202 -----~~~~~~~~~~~~~~~~ 217 (437)
++ .+|+++.++++++
T Consensus 440 ~~~~~~~-~~~a~~~l~~~~~ 459 (490)
T PRK10642 440 ATPAASD-IQEAKEILVEHYD 459 (490)
T ss_pred ccccccc-hhhHHHHhhcccc
Confidence 66 8888888888864
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.9e-13 Score=119.25 Aligned_cols=248 Identities=9% Similarity=-0.037 Sum_probs=140.8
Q ss_pred cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCC-------------CcchHHHHHhhHHH-HHHHHHh
Q 047673 123 NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKG-------------GWGWRISLAMAVAP-ASILTIG 187 (437)
Q Consensus 123 ~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~-------------~~~wr~~f~~~~i~-~~~~~~~ 187 (437)
.+..++++.. ++++.+.+++.+.++++|..++|.+++.+..... ..+|+++|++.+.. .++.++.
T Consensus 30 ~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 30 AANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999 8899999999999999999999999997763211 13799999865443 3333332
Q ss_pred -hccCCCChhHHHhhCCCHHHHHH-HHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhcccccccccccchHHHHHH
Q 047673 188 -LLFLPETPSSIIQRNNDYQKAEK-IMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSA 265 (437)
Q Consensus 188 -~~~l~esp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (437)
+..+||.++...+ + .++.+. ..++..+.+...............+. ...+|...+-......-.+..+. +...
T Consensus 110 ~~~~~p~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~f~yvg~e~-~~~~w~~~yl~~~~~~g~s~~~a-~~~~ 184 (310)
T TIGR01272 110 AFLPLPELQEADVA--R-VSSGDTTQKTSAFQFTHLVLGALGIFVYVGAEV-SAGSFLVNFLSDPHALGLPEDQA-AHFT 184 (310)
T ss_pred HHccCCCCCccccc--c-cccccccchhhHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccCCCCHHHH-HHHH
Confidence 2335654221000 0 000000 00000000000000000000000010 01112211111101112355666 7888
Q ss_pred HHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccccccccccccCChhh
Q 047673 266 LVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ-LVLICVYNAGFTFLWWPLGWLVPSEIFPLEI 344 (437)
Q Consensus 266 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 344 (437)
.....+.++|+++.+++.||+++|+.+..+..+..++.++........ ...+.+...+. ....|.......+..|++
T Consensus 185 s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~-s~i~P~~~s~a~~~~~~~- 262 (310)
T TIGR01272 185 AYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAMWFVLALGLFN-SIMFPTIFSLALNALGRH- 262 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhh-
Confidence 999999999999999999999999988887777776665444332221 22222222222 233444455555667754
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 047673 345 RSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGV 378 (437)
Q Consensus 345 r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 378 (437)
.+++.++. ..+.+|+.+.|++.|.+.|..+...
T Consensus 263 ~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~ 295 (310)
T TIGR01272 263 TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQL 295 (310)
T ss_pred hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchH
Confidence 45666764 6788999999999999999887543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-11 Score=114.54 Aligned_cols=298 Identities=14% Similarity=0.052 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceee--eee--------cchhhhhhcc-cccccc
Q 047673 70 SLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLI--LGL--------NAPISLRNGT-PKHIGG 138 (437)
Q Consensus 70 ~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~--~~r--------~~~~~i~~~~-~~~r~~ 138 (437)
...+...+.++..|.++||+|||..+....+...+..+...+.. +|.++ -.+ ...++++|.. .++|..
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~~~~l~g~~~~~~s~~~a~vadis~~~~R~~ 148 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFLLLGLSGGFSAIFSVGFAYVADISSEEERSS 148 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhhhcccccchhhhhhhhhhheeeccchhHHHH
Confidence 44677789999999999999999999999988888888777766 32211 111 7788999999 999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHH-HhhccCCCChhHHHhh---------CC-CHHH
Q 047673 139 FNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILT-IGLLFLPETPSSIIQR---------NN-DYQK 207 (437)
Q Consensus 139 ~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~-~~~~~l~esp~~~~~~---------~~-~~~~ 207 (437)
..++.......+..++|.+++.+.+.. |.-.+|.+..+..++.. ..+.++||+-....+. ++ ..++
T Consensus 149 ~~gll~~~~~~~~~~~p~~~~~~~~~~---~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~ 225 (463)
T KOG2816|consen 149 SIGLLSGTFGAGLVIGPALGGYLVKFL---GIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSH 225 (463)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccchh
Confidence 999999999999999999999887654 66678888777666654 4567788874321111 00 0111
Q ss_pred HHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhccccc--ccccccchHHHHHHHHHHHHHHHHhhhHH-HHhh
Q 047673 208 AEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYR--PQLLSESTSLLMSALVTGGIGTVSTILPM-ILAD 284 (437)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d 284 (437)
..+..+...+.+..+.....................+.+ ..+. +..++.++. +...+..+....++.++.. .+..
T Consensus 226 ~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~-~~yl~~~f~w~~~~~-s~~~~~~~~~~~i~~l~~~~~l~~ 303 (463)
T KOG2816|consen 226 VADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVL-LLYLKAKFGWNKKEF-SDLLSLVSILGIISQLLLLPLLSS 303 (463)
T ss_pred hhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEE-EEEEeeecCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111000000000000000000000000001 0111 112266666 6677777777777777766 6777
Q ss_pred hcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHH
Q 047673 285 KLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVA 364 (437)
Q Consensus 285 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~ 364 (437)
.+|.|+.+..+.....+....+.+....+..........+.....+...+..+...+++.+|++.++...+..+.+.++|
T Consensus 304 ~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~ 383 (463)
T KOG2816|consen 304 ILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSP 383 (463)
T ss_pred HHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhH
Confidence 78999999999999999999988888777555555555555666666677777888999999999999999999999999
Q ss_pred HHHHHHHHh
Q 047673 365 QTVLAMLYH 373 (437)
Q Consensus 365 ~~~~~~~~~ 373 (437)
.+.+.+...
T Consensus 384 ~~~~~i~~~ 392 (463)
T KOG2816|consen 384 ALYGNIFAL 392 (463)
T ss_pred HHHHHHHHH
Confidence 999887654
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-11 Score=113.21 Aligned_cols=336 Identities=15% Similarity=0.078 Sum_probs=198.1
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhh-chhHHHHHHHHHHHHHHHHHhhcc--ccceeeeee-----------
Q 047673 57 CKFDSQLLAAFTSSLYIAGLIASLFASTVTRAF-GRKASILVGGTTFLTSSAIGGAAL--DIYMLILGL----------- 122 (437)
Q Consensus 57 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~a~--~~~~l~~~r----------- 122 (437)
+|+++++..-+.+.|.----+..+++|+++||+ |+|+++..+.+++.+|.++.+.+. +...++++-
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 689999998888888877788899999999996 999999999999999999999884 555555544
Q ss_pred -cchhhhhhcc-c--ccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCC----CC
Q 047673 123 -NAPISLRNGT-P--KHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLP----ET 194 (437)
Q Consensus 123 -~~~~~i~~~~-~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~----es 194 (437)
...+++.|.+ + .+|-..++++.++.++|++++|++.+.+.+.. ||...|..+++.....++.+...+ ++
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~---g~~~gF~~aavGm~~gl~~f~~~~r~~~~~ 212 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY---GWHVGFGLAAVGMIIGLVIFLLGRRHVKGI 212 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHHHHHccchhcCC
Confidence 7778889998 3 35777888999999999999999999988664 899999998877666655443332 11
Q ss_pred -----hhHHHhhCCCHHHHHHH----HHH----HhCCccHH-------------------------HHHHHHHHHhhh--
Q 047673 195 -----PSSIIQRNNDYQKAEKI----MQI----VRGTADVQ-------------------------AELDDLIRQSSV-- 234 (437)
Q Consensus 195 -----p~~~~~~~~~~~~~~~~----~~~----~~~~~~~~-------------------------~~~~~~~~~~~~-- 234 (437)
|..+..+.. ....... ... ....+... ++.++.......
T Consensus 213 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl 291 (498)
T COG3104 213 GGVPDPNPLSFNFL-LPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFL 291 (498)
T ss_pred CCCCCccchhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHH
Confidence 111100000 0000000 000 00000000 000000000000
Q ss_pred -------hhccccchhhhhcc-cccccccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCch-------hHHHHhHHHH
Q 047673 235 -------SKNINHPFKKIIDR-KYRPQLLSESTSLLMSALVTGGIGTVSTILPMILADKLGRK-------VLFLLGGIQI 299 (437)
Q Consensus 235 -------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-------~~~~~~~~~~ 299 (437)
-.++..+-...+.. ...+...+.+....+..+...+.-++.+++..++..|.+++ .-+.++..++
T Consensus 292 ~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~ 371 (498)
T COG3104 292 FAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILA 371 (498)
T ss_pred HHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHH
Confidence 00000000001100 00000111112225777777888888888888888875443 1244556666
Q ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHhhhcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 047673 300 LVSQVMIGSVMATQ-----------LVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVL 368 (437)
Q Consensus 300 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~ 368 (437)
..+.+++....... .+...++....-....|+...++....|+...+..++........++.++..+.+
T Consensus 372 g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 372 GLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 66666555541111 2233333333335677777788889999999999999888777777777766655
Q ss_pred H------HHHhcc-cchhhHHHHHHHHHHHHhhhc
Q 047673 369 A------MLYHFK-AGVFFFFGGWLIAMTTFVHFF 396 (437)
Q Consensus 369 ~------~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 396 (437)
. ..+... ...++.++....+........
T Consensus 452 ~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~ 486 (498)
T COG3104 452 LTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLL 486 (498)
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 2 222222 344555555444444444433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-09 Score=98.15 Aligned_cols=311 Identities=13% Similarity=0.001 Sum_probs=183.8
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhc-----hhHHHH-HHHHHHHHHHHHHhhc-----c-------ccc-
Q 047673 56 YCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFG-----RKASIL-VGGTTFLTSSAIGGAA-----L-------DIY- 116 (437)
Q Consensus 56 ~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G-----rr~~~~-~~~~~~~~~~~~~~~a-----~-------~~~- 116 (437)
|+++.....+.+.++.++... ..+.+|+.+|+.+ ||.-++ .+.++...+..+..++ . +.+
T Consensus 9 EL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~ 87 (403)
T PF03209_consen 9 ELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWL 87 (403)
T ss_pred HhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHH
Confidence 348888999999998887755 6899999999998 776554 4666666655555443 2 111
Q ss_pred eeeeee---------------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHH
Q 047673 117 MLILGL---------------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAP 180 (437)
Q Consensus 117 ~l~~~r---------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~ 180 (437)
...++- ...++++|.. +++|+++.++...+.-+|.+++..+.+.+.+.+....-...+...++.
T Consensus 88 g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i 167 (403)
T PF03209_consen 88 GLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALI 167 (403)
T ss_pred HHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHH
Confidence 111111 5557789999 999999999999999999999999988776544311111222222222
Q ss_pred HHHHHHhhccCCCChhHHHh--hCCCHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhccccccccc--c
Q 047673 181 ASILTIGLLFLPETPSSIIQ--RNNDYQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQLL--S 256 (437)
Q Consensus 181 ~~~~~~~~~~l~esp~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 256 (437)
.+...++..+=.|.+..... ++++++...+..++...++....-..-+..... .....|..-.+|--..+ +
T Consensus 168 ~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~-----a~~~QD~iLEPygg~Vfgms 242 (403)
T PF03209_consen 168 ALLLNLIALWGQEPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTL-----AFFMQDVILEPYGGEVFGMS 242 (403)
T ss_pred HHHHHHHHHHhcccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHH-----HHHhhHHHcCCchhHHcCCC
Confidence 22222222222232211111 111122223333333332221111110000000 11122222223322222 5
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhh-hcCchhHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhccccc-
Q 047673 257 ESTSLLMSALVTGGIGTVSTILPMILAD-KLGRKVLFLLGGIQILVSQVMIGSVMATQ---LVLICVYNAGFTFLWWPL- 331 (437)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~- 331 (437)
..++ ..++...+.+.+++..+.+++.. |.++++....++...+++..++....... .+...++.++++.+...+
T Consensus 243 v~eT-T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vg 321 (403)
T PF03209_consen 243 VGET-TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVG 321 (403)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHH
Confidence 5666 77888888899999999888876 67888888888888888877766554332 444455555555544332
Q ss_pred ccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047673 332 GWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYH 373 (437)
Q Consensus 332 ~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 373 (437)
.....-+..+++..|..+|.....+.+...++....|...|.
T Consensus 322 als~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 322 ALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred HHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222334777778889999999998888888888888877763
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.4e-12 Score=115.30 Aligned_cols=175 Identities=11% Similarity=0.055 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhh
Q 047673 4 FVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFAS 83 (437)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g 83 (437)
..|..+.++.+-+|+.+...+++.+.. .++.++. |.+-+.+..|++.++..++.+++++.+|
T Consensus 31 t~wrsi~l~~~~sfl~~v~~sI~~~s~--wpYl~~l----------------D~~A~~~ffG~viaa~slg~~i~~liF~ 92 (488)
T KOG2325|consen 31 TNWRSIYLALLNSFLVAVQFSIYLTSM--WPYLQKL----------------DPTATATFFGLVIAASSLGHAIFSLIFG 92 (488)
T ss_pred CchHhHHHHHHHHHHHhhhheEEEeec--chhhhhc----------------CCCCCcchhhHHHHHHHHHHHhcchhhc
Confidence 356677777777888888888887554 5666654 2256888999999999999999999999
Q ss_pred hhhhhhch-hHHHHHHHHHHHHHHHHH-hhc---c-ccceeeeee-----------cchhhhhhcc-cccccchHHHHHH
Q 047673 84 TVTRAFGR-KASILVGGTTFLTSSAIG-GAA---L-DIYMLILGL-----------NAPISLRNGT-PKHIGGFNIGFQV 145 (437)
Q Consensus 84 ~l~dr~Gr-r~~~~~~~~~~~~~~~~~-~~a---~-~~~~l~~~r-----------~~~~~i~~~~-~~~r~~~~~~~~~ 145 (437)
....|.+. |+-++.+.++..+++++. +++ + .-+.++++| ...+|+++.. +++|.++++....
T Consensus 93 ~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~ 172 (488)
T KOG2325|consen 93 IWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSG 172 (488)
T ss_pred ccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhh
Confidence 99999987 888999999999999998 433 3 567888899 5668899999 9999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCC-------c---chHHHHHhhHHHHHHHHH-hhccCCCChh
Q 047673 146 CVATGILSANLLNYGTQKIKGG-------W---GWRISLAMAVAPASILTI-GLLFLPETPS 196 (437)
Q Consensus 146 ~~~~G~~~~~~~~~~l~~~~~~-------~---~wr~~f~~~~i~~~~~~~-~~~~l~esp~ 196 (437)
+..+|.++||.+...+...... . -+..+-|+.++..++.++ +.+++.|.++
T Consensus 173 ~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 173 GFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 9999999999988877654321 0 123456666666666444 3455677654
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=6e-12 Score=99.36 Aligned_cols=123 Identities=25% Similarity=0.271 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cc
Q 047673 68 TSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PK 134 (437)
Q Consensus 68 ~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~ 134 (437)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++++.+.+.+ ....++.|.. ++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 3456788899999999999999999999999999999999888888888777777 4556788999 89
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHh-hccCCC
Q 047673 135 HIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIG-LLFLPE 193 (437)
Q Consensus 135 ~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~-~~~l~e 193 (437)
+|++..++.+....+|..+++.+.+.+.+. .+|++.+++.++..++..+. .+..||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQF---LGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcc---cchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999988754 37999998877666655444 344454
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-10 Score=108.08 Aligned_cols=133 Identities=13% Similarity=0.039 Sum_probs=107.1
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cch
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAP 125 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~ 125 (437)
|+++.+.+++.+...++..++.++.|+++||+|||+.+..+.....+.......+++.+.+++.+ ...
T Consensus 248 ~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~ 327 (393)
T PRK15011 248 HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGM 327 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999998888888889999999999999999988877766666555555567776666555 233
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCC
Q 047673 126 ISLRNGTPKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPE 193 (437)
Q Consensus 126 ~~i~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~e 193 (437)
.+..|..|++|+++.++++....+|..+++.+++.+.+.. ||+..|++.++..++.++..+++||
T Consensus 328 ~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 328 LYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIW---NYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4566766777999999999999999999999999988653 7999999888888887777776665
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.5e-11 Score=118.19 Aligned_cols=129 Identities=12% Similarity=-0.076 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhh
Q 047673 63 LLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRN 130 (437)
Q Consensus 63 ~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~ 130 (437)
...+...+..++..++.++.|+++||+|||++++++.++.++++++.+++++...+++.+ ...++++|
T Consensus 596 ~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aE 675 (742)
T TIGR01299 596 MIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVE 675 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777899999999999999999999999999999999999998888766665555 56677899
Q ss_pred cc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCCh
Q 047673 131 GT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETP 195 (437)
Q Consensus 131 ~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp 195 (437)
++ .+.|++++|+..+...+|.+++|.+++.+... +...+|++.++..+++.++.+++||+.
T Consensus 676 l~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~----~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 676 LYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI----TKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99 99999999999999999999999999876543 356788887777777766667779874
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-10 Score=107.95 Aligned_cols=145 Identities=18% Similarity=0.020 Sum_probs=106.8
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWL 334 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 334 (437)
+..+. +.......++..++.++.|+++||+|||+.+..+.++..++........+.....+..+..+.+. ...+....
T Consensus 27 s~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 105 (399)
T TIGR00893 27 SAAQY-GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIIL 105 (399)
T ss_pred ChhhH-HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34455 78888999999999999999999999999999998888888777776655443333333333333 23445566
Q ss_pred cccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHHHhhhccccCC
Q 047673 335 VPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFF-GGWLIAMTTFVHFFLPETK 401 (437)
Q Consensus 335 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~ 401 (437)
++.|.+|+++|+++.++......++..+++.+.+.+.+..+|...+.. ++...+..++..+..++++
T Consensus 106 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 106 IVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPP 173 (399)
T ss_pred HHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCC
Confidence 778999999999999999999999999999999988888886654444 3333444444444455543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-09 Score=102.00 Aligned_cols=314 Identities=10% Similarity=0.002 Sum_probs=172.4
Q ss_pred CcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhc-----hhHHHHHHHHHHHHHHHHHhhccc----cceeeeee---
Q 047673 55 NYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFG-----RKASILVGGTTFLTSSAIGGAALD----IYMLILGL--- 122 (437)
Q Consensus 55 ~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~G-----rr~~~~~~~~~~~~~~~~~~~a~~----~~~l~~~r--- 122 (437)
+++|+++++...+.+...+...+ -++.|.++|-+- ||+-++++.++..++.+..+..++ .....+.-
T Consensus 18 ~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la 96 (433)
T PF03092_consen 18 DDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLA 96 (433)
T ss_pred HHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHH
Confidence 34599999999999998888655 567889999863 555666777777666665555433 22211111
Q ss_pred ---------cchhhhhhcc---cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhh-c
Q 047673 123 ---------NAPISLRNGT---PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGL-L 189 (437)
Q Consensus 123 ---------~~~~~i~~~~---~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~-~ 189 (437)
++.+.+.|.. |+.||...+.......+|.+++..+++.+.+.. ++|..|.+.+++..+..+.. +
T Consensus 97 ~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~---~~~~~f~i~~~~~~l~~~~~~~ 173 (433)
T PF03092_consen 97 SFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF---GPQGVFLISAALPLLMLIVALF 173 (433)
T ss_pred HHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC---CCeEEehHHHHHHHHHHHHHHH
Confidence 6667777777 444677788888889999999999998887654 68888888776655554443 3
Q ss_pred cCCCChhHH----HhhCCC-HHH----HHHHHHHHh---CCccHHHHHH-HHHHHhhhhhccccchhhhhccc-cccccc
Q 047673 190 FLPETPSSI----IQRNND-YQK----AEKIMQIVR---GTADVQAELD-DLIRQSSVSKNINHPFKKIIDRK-YRPQLL 255 (437)
Q Consensus 190 ~l~esp~~~----~~~~~~-~~~----~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 255 (437)
..+|.++.. ....++ .+. .++..+++. ..+.+..... -.......... .....-.+... ....-+
T Consensus 174 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-~~a~~fy~~~~~~~gp~f 252 (433)
T PF03092_consen 174 LLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSI-SSASSFYFQTDALGGPHF 252 (433)
T ss_pred hhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCC-CCccEEEEEecccccccc
Confidence 444411000 000000 000 000110000 0000000000 00000000000 00000000000 000012
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHH----------HHHH--HHHHHHHHHH
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSV----------MATQ--LVLICVYNAG 323 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~--~~~~~~~~~~ 323 (437)
+.... +....+..++.+++..+..+...+..-|+++....++..+..+.-... .+.. ..--.+....
T Consensus 253 s~~f~-~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~ 331 (433)
T PF03092_consen 253 SPSFY-GTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI 331 (433)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence 33344 556666777778888888777777777777766666554443321100 0001 1111222222
Q ss_pred hhhcccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047673 324 FTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFK 375 (437)
Q Consensus 324 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 375 (437)
..+.+.|.. ...+|+.|+..-|+.+++...+.+++..++..+...+.+..+
T Consensus 332 ~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 332 GMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred HHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 233344442 345799999999999999999999999999988888877655
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-10 Score=108.33 Aligned_cols=135 Identities=13% Similarity=0.126 Sum_probs=107.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhcc-c---cceeeeee------------c
Q 047673 60 DSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAAL-D---IYMLILGL------------N 123 (437)
Q Consensus 60 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~-~---~~~l~~~r------------~ 123 (437)
+..+.+...++..++..++.++.|+++||+|||+++.++.++.+++..+..... + ++.+++.+ .
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999988877766632 2 23344434 4
Q ss_pred chhhhhhcc-cccccchHHHHH-HHHHHHHHHHHHHHhhhhccCCC---cchHHHHHhhHHHHHHHHH-hhccCCCC
Q 047673 124 APISLRNGT-PKHIGGFNIGFQ-VCVATGILSANLLNYGTQKIKGG---WGWRISLAMAVAPASILTI-GLLFLPET 194 (437)
Q Consensus 124 ~~~~i~~~~-~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~~~---~~wr~~f~~~~i~~~~~~~-~~~~l~es 194 (437)
...++.|.+ +++|+++.++.+ ...++|.++||.+++.+.+..+. +||+..|.+.++..++..+ ..++++|+
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 456789999 899999999997 67899999999999998876543 4799999887766555444 45566766
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.3e-10 Score=106.38 Aligned_cols=143 Identities=17% Similarity=0.091 Sum_probs=105.6
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccccccc
Q 047673 257 ESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWLV 335 (437)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 335 (437)
..+. +.......++.+++.++.|+++||+|||+.+..+.++..++.++.....+.....+..+..+++. ...+....+
T Consensus 51 ~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 129 (398)
T TIGR00895 51 PVQL-GFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNAL 129 (398)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHH
Confidence 3445 77788888899999999999999999999999988888887777666554443333333333333 234455677
Q ss_pred ccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH-HHHHHHHHHhhhccccC
Q 047673 336 PSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFG-GWLIAMTTFVHFFLPET 400 (437)
Q Consensus 336 ~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 400 (437)
..|.+|++.|+++.++......++..+++.+.+.+.+..++...+.+. ++..+...+...+.+++
T Consensus 130 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 130 VSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPES 195 (398)
T ss_pred HHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCC
Confidence 789999999999999999999999999999999998888866444443 44444445555556654
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.13 E-value=7e-10 Score=102.17 Aligned_cols=130 Identities=16% Similarity=0.138 Sum_probs=114.4
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhH-HHHHHHHHHHHHHHHHhhccccceeeeee------------cc
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKA-SILVGGTTFLTSSAIGGAALDIYMLILGL------------NA 124 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~ 124 (437)
|.+..+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++.+.+++.. ..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 286 (352)
T cd06174 207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhH
Confidence 678999999999999999999999999999999999 99999999999999999888876665555 56
Q ss_pred hhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhcc
Q 047673 125 PISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLF 190 (437)
Q Consensus 125 ~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~ 190 (437)
..++.|.. +++|++..++......+|..+++.+.+.+.+. .+|+..+.+.++..++..+..++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~---~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT---GGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCcchHHHHHHHHHHHHHHHhee
Confidence 67788999 89999999999999999999999999988754 38999999988887777665544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.8e-10 Score=103.88 Aligned_cols=125 Identities=11% Similarity=-0.043 Sum_probs=104.0
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccce--eeeee------------c
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYM--LILGL------------N 123 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~--l~~~r------------~ 123 (437)
+.+..+.+.+.+...++..+++++.|++.||+|||+.+.++..+..++.++..+.++... ++... .
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 315 (377)
T TIGR00890 236 GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISL 315 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhc
Confidence 678889999999999999999999999999999999999999999888888777664322 11112 4
Q ss_pred chhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHH
Q 047673 124 APISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILT 185 (437)
Q Consensus 124 ~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~ 185 (437)
.+.++.|.+ +++|+++.++......+|..++|.+.+.+.+.. ||++.|.+.++..++.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 316 FPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI---GFEYTFIVTGAFALTSL 375 (377)
T ss_pred cHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh---chhhHHHHHHHHHHHhc
Confidence 456788999 999999999999999999999999999887543 79999988877666543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-09 Score=103.33 Aligned_cols=143 Identities=11% Similarity=0.075 Sum_probs=104.0
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccccccc
Q 047673 257 ESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWLV 335 (437)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 335 (437)
..+. +...+...++..++.++.|+++||+|||+.+..+.++.+++.+......+........+..+.+. ...+....+
T Consensus 46 ~~~~-g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~ 124 (405)
T TIGR00891 46 TVDA-ASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAY 124 (405)
T ss_pred hhhH-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 3455 78888889999999999999999999999999998888888777766655443333333333332 233444566
Q ss_pred ccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHHHHhhhccccC
Q 047673 336 PSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFK--AGVFFFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 336 ~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (437)
+.|.+|+++|+++.++.+....+|..+++.+.+.+.+..+ |...+...++..+...+.....||+
T Consensus 125 i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 191 (405)
T TIGR00891 125 VIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEA 191 (405)
T ss_pred HHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 7899999999999999999999999999999888887665 5554444444444444444445554
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-10 Score=109.81 Aligned_cols=134 Identities=13% Similarity=0.104 Sum_probs=107.8
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cch
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAP 125 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~ 125 (437)
+.+..+.|++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.+++++.+.+++.+ ...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999989998999988877777 233
Q ss_pred hhhhhcc-cccccchHHH-HHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHH-HhhccCCCC
Q 047673 126 ISLRNGT-PKHIGGFNIG-FQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILT-IGLLFLPET 194 (437)
Q Consensus 126 ~~i~~~~-~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~-~~~~~l~es 194 (437)
.++.|.. ++.|+...+. ++.+..+|.++++.+.+.+.+.. ||+..|.+.++..++.. +..+.+++.
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~---G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI---GFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh---CchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5667888 7888877655 67778899999999999988654 79999998766655544 334444443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-09 Score=99.78 Aligned_cols=145 Identities=12% Similarity=-0.024 Sum_probs=98.4
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFLWWPLGWLV 335 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (437)
+..+. +...+...++..++.+..|+++||+|||+++.........+........+.....+.-+..+.+.+........
T Consensus 24 s~~~~-g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~~~~~~~~ 102 (368)
T TIGR00903 24 SKEEL-GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPFLLNAFAP 102 (368)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 34455 78888889999999999999999999998766554444343322221122223333333333333332333344
Q ss_pred ccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHHHhhhccccCC
Q 047673 336 PSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFF-GGWLIAMTTFVHFFLPETK 401 (437)
Q Consensus 336 ~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~ 401 (437)
.+|.+|+++|++++++......+|..+++.+.+.+.++.+|...+.. +++..+..++.++++||.+
T Consensus 103 ~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 103 AASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 47899999999999999999999999999999998888888755544 5555555566666677654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8e-10 Score=106.35 Aligned_cols=167 Identities=17% Similarity=0.149 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047673 8 SCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTR 87 (437)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d 87 (437)
.+++.++..+.+++..+.++..+ ..+-+.| +++..+.|++.+.+-++..+...+..+..-
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~I--ttiErRF------------------~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~ 157 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVI--TTIERRF------------------KISSSQSGLIASSYDIGNLLLIIFVSYFGS 157 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhh--hhhhhhc------------------CCCCCcceeEeeecccchhhhhHhHHHhcc
Confidence 34556666777777777776554 4556666 889999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHhhcc----c--------------c---------------------------------c
Q 047673 88 AFGRKASILVGGTTFLTSSAIGGAAL----D--------------I---------------------------------Y 116 (437)
Q Consensus 88 r~Grr~~~~~~~~~~~~~~~~~~~a~----~--------------~---------------------------------~ 116 (437)
|.-|-+.+-++.++++++++++++-+ . . +
T Consensus 158 r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (735)
T KOG3626|consen 158 RGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPF 237 (735)
T ss_pred ccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhH
Confidence 99999999999999999999997631 0 0 0
Q ss_pred -eeeeee------------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCc--------------
Q 047673 117 -MLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGW-------------- 168 (437)
Q Consensus 117 -~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~-------------- 168 (437)
.++++. ...+|+-|.. +++-....|+......+|.++|.++++++.....+.
T Consensus 238 llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrW 317 (735)
T KOG3626|consen 238 LLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRW 317 (735)
T ss_pred HHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcch
Confidence 000000 6778899999 999999999999999999999999999886633221
Q ss_pred --chHHHHHhhHHHHHHHHHhhccCCCC
Q 047673 169 --GWRISLAMAVAPASILTIGLLFLPET 194 (437)
Q Consensus 169 --~wr~~f~~~~i~~~~~~~~~~~l~es 194 (437)
.|..-|++.+...++..+.++++|..
T Consensus 318 IGAWWlGFLi~g~~~~~~a~p~f~fPk~ 345 (735)
T KOG3626|consen 318 IGAWWLGFLICGALLLFSAVPLFFFPKE 345 (735)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 25555666666666666666777755
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-09 Score=100.88 Aligned_cols=143 Identities=13% Similarity=0.038 Sum_probs=99.0
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFT-FLWWPLGWL 334 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 334 (437)
+..+. +...+...+...++.++.|+++||+|||+.+..+.++..++.+.+.+..+......+....+.. ....+....
T Consensus 41 s~~~~-g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 119 (395)
T PRK10054 41 SVDLI-GYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKA 119 (395)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455 7888888889999999999999999999999988888888777776665544222222222222 123444556
Q ss_pred cccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccch-hhHHHHHHHHHHHHhhhccccC
Q 047673 335 VPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGV-FFFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 335 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~ 400 (437)
+..|..|++.|+++.|+.+...++|..++|.+.+.+.+ .++.. +...++...+..+...+++++.
T Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 120 WFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 66899999999999999999999999999999888765 56543 3333333333333333444443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-10 Score=99.95 Aligned_cols=111 Identities=15% Similarity=-0.002 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCC
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFLWWPLGWLVPSEIFP 341 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (437)
+.+.+.+++.+++.++..|.++||+|||.++..+.+..++...+.+...+...+...-+..+..-+...+..++++|+++
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAiisdV~s 150 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAIISDVVS 150 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHhhcC
Confidence 88899999999999999999999999999999999999887777766665522222244445444555666788899999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047673 342 LEIRSAGKSITVAVGLLFTSLVAQTVLAMLY 372 (437)
Q Consensus 342 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 372 (437)
++.|+.+++.......+|-.++|.+.|++..
T Consensus 151 ek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 151 EKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 9999999999999999999999999998877
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.1e-09 Score=100.16 Aligned_cols=145 Identities=11% Similarity=0.012 Sum_probs=106.1
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccccccc
Q 047673 257 ESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWLV 335 (437)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 335 (437)
..+. +...+...++..++.++.|++.||+|||+++..+.++..++.++..+..+...+...-+..+.+. ...+....+
T Consensus 42 ~~~~-g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 120 (412)
T TIGR02332 42 ATMF-GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLY 120 (412)
T ss_pred HHHH-HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4455 78888899999999999999999999999999999998888888777655443333333333333 234555566
Q ss_pred ccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh------cccchhhHH-HHHHHHHHHHhhhccccCCC
Q 047673 336 PSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYH------FKAGVFFFF-GGWLIAMTTFVHFFLPETKN 402 (437)
Q Consensus 336 ~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 402 (437)
+.|.+|+++|+++.++.+....+|..+++.+.+.+.+. .+|...+.. ++..++...+.++++||+++
T Consensus 121 ~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 121 LTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 78999999999999999999999999999998887642 466544444 44444455555666776653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-09 Score=100.40 Aligned_cols=133 Identities=11% Similarity=0.090 Sum_probs=105.4
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cch
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAP 125 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~ 125 (437)
|.++.+.+++.+.......++.++.|++.||+|||+.+.++.++..+..++..+.++.+.+++.+ ...
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 310 (375)
T TIGR00899 231 GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGM 310 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999998888778888899999999999999999888777666666666666766555544 334
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCC
Q 047673 126 ISLRNGTPKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPE 193 (437)
Q Consensus 126 ~~i~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~e 193 (437)
.++.|..|++++++.++++....+|..+++.+++.+.+.. ||+..|++.++..++..+...+++|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 311 LYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERW---SYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHHHHHheecC
Confidence 5566766667789999999999999999999999887654 7999999988877777766655543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.6e-10 Score=106.77 Aligned_cols=140 Identities=19% Similarity=0.158 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhc-ccccccc
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMA------TQLVLICVYNAGFTFL-WWPLGWL 334 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~ 334 (437)
+.+.....++.+++.++.|+++||+|||+.+..+.++..++.++...... .....+.-+..+++.+ ..+....
T Consensus 59 ~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~ 138 (502)
T TIGR00887 59 AAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAI 138 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 67888888999999999999999999999999888888887776665432 1233333333344433 3455567
Q ss_pred cccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hcccchhhHHHHHHHHHHH
Q 047673 335 VPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLY-----------------------HFKAGVFFFFGGWLIAMTT 391 (437)
Q Consensus 335 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~-----------------------~~g~~~~~~~~~~~~~~~~ 391 (437)
+..|.+|++.|+++.++.+....+|..+++.+...+.. ..+|...+.+.++..+...
T Consensus 139 ~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~ 218 (502)
T TIGR00887 139 ITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLAL 218 (502)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHH
Confidence 88999999999999999999988888887777654432 1246655555555555555
Q ss_pred HhhhccccCC
Q 047673 392 FVHFFLPETK 401 (437)
Q Consensus 392 ~~~~~~~~~~ 401 (437)
+..+++||+.
T Consensus 219 ~~~~~lpESp 228 (502)
T TIGR00887 219 YFRLTIPETP 228 (502)
T ss_pred HHHHhCCCCH
Confidence 5556778863
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.2e-08 Score=85.66 Aligned_cols=137 Identities=15% Similarity=0.112 Sum_probs=91.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee----cchhh-----
Q 047673 57 CKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL----NAPIS----- 127 (437)
Q Consensus 57 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r----~~~~~----- 127 (437)
+|++..|++.+....+...++.+++.|.++||+|||+.-+..+++++++++. -..++++.++++| ++.++
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS~F 142 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFSAF 142 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999999864 4668999999999 22222
Q ss_pred ----hhhcc-cccc----cchHHHHH-HHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHh-hccCCCCh
Q 047673 128 ----LRNGT-PKHI----GGFNIGFQ-VCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIG-LLFLPETP 195 (437)
Q Consensus 128 ----i~~~~-~~~r----~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~-~~~l~esp 195 (437)
+.|.- .+.+ +...+... ...++-.+.+.+++..+.+..+ .|-..+|.......++..+. ....+|..
T Consensus 143 EsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~-~g~vaPF~~a~~~l~~~~~~I~~~W~ENy 220 (354)
T PF05631_consen 143 ESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG-FGPVAPFDAAIVLLAVAAVLILKTWPENY 220 (354)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHHHHhcccccC
Confidence 23332 1111 11111111 1223334455555555554332 23467888877666654443 44566653
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.1e-10 Score=103.78 Aligned_cols=132 Identities=13% Similarity=0.012 Sum_probs=105.0
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cch
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAP 125 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~ 125 (437)
|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+.- ...
T Consensus 251 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 330 (406)
T PRK11551 251 GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLY 330 (406)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHH
Confidence 78899999999999999999999999999999999999887777777777666666665443333 345
Q ss_pred hhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccC
Q 047673 126 ISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFL 191 (437)
Q Consensus 126 ~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l 191 (437)
++..|.+ +++|++..++.+....+|..++|.+++.+.+... +|...++......++..+..+++
T Consensus 331 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 331 ALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGR--STVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCC--chHHHHHHHHHHHHHHHHHHHHH
Confidence 6678899 9999999999999999999999999998876542 57777776665555555554444
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=102.93 Aligned_cols=144 Identities=16% Similarity=0.084 Sum_probs=104.9
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFL-WWPLGWL 334 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 334 (437)
+..+. +...+...++..++.++.|++.||+|||+.+..+.++..++.++.....+.....+..+..+.+.+ ..+....
T Consensus 56 s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~ 134 (434)
T PRK11663 56 SRSDI-GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAK 134 (434)
T ss_pred CHHHH-HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHH
Confidence 44555 788888999999999999999999999999999999988888877766554433222222222222 2344456
Q ss_pred cccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHHHhhhccccC
Q 047673 335 VPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFF-GGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 335 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~ 400 (437)
++.|.+|+++|++++++.+....+++.+++.+.+.+.+..+|...+.. ++..++..++..++++|+
T Consensus 135 ~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 135 LLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 678999999999999999999999999999999999888887655444 333333434444445543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.5e-10 Score=104.11 Aligned_cols=144 Identities=13% Similarity=0.072 Sum_probs=104.3
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWL 334 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 334 (437)
+..+. +...+...++..++.++.|+++||+|||+.+..+.++..++.++.....+.....+..+..+.+. ...+....
T Consensus 28 s~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 106 (379)
T TIGR00881 28 SKTDL-GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGR 106 (379)
T ss_pred CHhHH-HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHH
Confidence 34455 78888999999999999999999999999999999998888888877765554434444434433 23455566
Q ss_pred cccccCChhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHhcccch-hhHHHHHHHHHHHHhhhccccC
Q 047673 335 VPSEIFPLEIRSAGKSITVAVGLLFTSLVAQ-TVLAMLYHFKAGV-FFFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 335 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~ 400 (437)
++.|.+|+++|+++.++.+....++..++++ +.+.+.+..++.. +...+++..+..++...+.+++
T Consensus 107 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 107 TVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred HHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence 7789999999999999999999999999995 4455555556554 3334444444445555555554
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.5e-09 Score=99.15 Aligned_cols=132 Identities=17% Similarity=0.057 Sum_probs=98.7
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhh-cccc
Q 047673 257 ESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVM-----ATQLVLICVYNAGFTF-LWWP 330 (437)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~ 330 (437)
..+. +...+...+...++.++.|+++||+|||+.+..+.++..++.+...... +...........+.+. ...+
T Consensus 33 ~~~~-g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 111 (365)
T TIGR00900 33 ASVL-SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTP 111 (365)
T ss_pred HHHH-HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3445 7888888999999999999999999999999998888777777666655 3333333333333332 2344
Q ss_pred cccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 047673 331 LGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAM 389 (437)
Q Consensus 331 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 389 (437)
....+..|.+|+++|+++.++.+....++..+++.+.+.+.+..++...+....+..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~ 170 (365)
T TIGR00900 112 AYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAI 170 (365)
T ss_pred HHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55677789999999999999999999999999999999998888876544444333333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-11 Score=117.20 Aligned_cols=131 Identities=18% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchh
Q 047673 13 ASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRK 92 (437)
Q Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr 92 (437)
++..+.+....+..+.++ ..+.++| +++..+.|++.+.+-++..+..++..++.+|..|-
T Consensus 9 ~~~~~~q~~~~g~~~~~l--ttiErRF------------------~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrp 68 (539)
T PF03137_consen 9 CLLGLFQMMVSGYVNSSL--TTIERRF------------------GLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRP 68 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHhc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 333444455555555443 4667777 89999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHhhc----ccc----------------------------------------------ceeeeee
Q 047673 93 ASILVGGTTFLTSSAIGGAA----LDI----------------------------------------------YMLILGL 122 (437)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~a----~~~----------------------------------------------~~l~~~r 122 (437)
|.+-++.++++++++++++= ..| ..++++.
T Consensus 69 rwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq 148 (539)
T PF03137_consen 69 RWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQ 148 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHH
Confidence 89999999999999998752 111 0111111
Q ss_pred ------------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhc
Q 047673 123 ------------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQK 163 (437)
Q Consensus 123 ------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~ 163 (437)
...+|+-|.. +++-+...|++.+...+|.++|.++++.+.+
T Consensus 149 ~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~ 202 (539)
T PF03137_consen 149 LLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLR 202 (539)
T ss_dssp ---SSS------------------------------------------------
T ss_pred HHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHh
Confidence 7778999999 9999999999999999999999999987664
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-09 Score=100.37 Aligned_cols=144 Identities=20% Similarity=0.135 Sum_probs=105.8
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccccccc
Q 047673 257 ESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFL-WWPLGWLV 335 (437)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 335 (437)
..+. +...+...++..++.++.|++.||+|||+.+..+..+..++.+......+........+..+.+.+ ..+....+
T Consensus 39 ~~~~-g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 117 (385)
T TIGR00710 39 ASIV-QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQAL 117 (385)
T ss_pred HHHH-HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 3455 788888899999999999999999999999999988888888777766554433333333333332 23444567
Q ss_pred ccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh-hHHHHHHHHHHHHhhhccccCC
Q 047673 336 PSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVF-FFFGGWLIAMTTFVHFFLPETK 401 (437)
Q Consensus 336 ~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 401 (437)
..|.+|+++|+++.++.+....++..+++.+.+.+.+..+|... +..++...+..+...+..||++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 118 VRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETL 184 (385)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 78999999999999999999999999999999988888886543 3444444444444445555544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-09 Score=84.18 Aligned_cols=132 Identities=20% Similarity=0.223 Sum_probs=93.6
Q ss_pred HHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccccccCChhhh
Q 047673 267 VTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIR 345 (437)
Q Consensus 267 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r 345 (437)
...++.+++.++.+++.||+|||+.+..+.....++.+......+...........+.+. ...+....+..|.+|+++|
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 85 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEER 85 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhh
Confidence 346778889999999999999999998888888777776665444333333333333332 2344556677899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHHhhhccc
Q 047673 346 SAGKSITVAVGLLFTSLVAQTVLAMLYHFKAG-VFFFFGGWLIAMTTFVHFFLP 398 (437)
Q Consensus 346 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~ 398 (437)
+++.++.+....++..+++.+.+.+.+..++. .+...+....+..+......|
T Consensus 86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 86 GVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred hHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999998877764 344444444444444444443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-09 Score=99.04 Aligned_cols=143 Identities=13% Similarity=0.133 Sum_probs=104.5
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccccccc
Q 047673 257 ESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFL-WWPLGWLV 335 (437)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 335 (437)
..+. +...+...+...++.++.|++.||+|||+++..+..+..++.+......+.....+..+..+.+.+ ..+....+
T Consensus 43 ~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~ 121 (390)
T PRK03545 43 TAQV-GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASL 121 (390)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455 777888888888999999999999999999999999988888877776655533333333333332 33444566
Q ss_pred ccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccch-hhHHHHHHHHHHHHhhhccccC
Q 047673 336 PSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGV-FFFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 336 ~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~ 400 (437)
..|.+|+++|++++|+......++..+++++.+.+.+..+|.. +++.++...+.........|+.
T Consensus 122 i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 122 AIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred HHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 7899999999999999999999999999999998888888664 4444444444444444444543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.6e-09 Score=95.50 Aligned_cols=142 Identities=16% Similarity=0.131 Sum_probs=120.7
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWL 334 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 334 (437)
+...+ +...+.++.+..+++++...+.||+.||++++....++.++.++..+.++.....+.=...+..- .+.++...
T Consensus 46 s~~~a-G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~ 124 (394)
T COG2814 46 SEGAA-GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAA 124 (394)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667 99999999999999999999999999999999999999999999999888875555545444443 45566677
Q ss_pred cccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHHhhhccc
Q 047673 335 VPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAG-VFFFFGGWLIAMTTFVHFFLP 398 (437)
Q Consensus 335 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~ 398 (437)
+..++.|+++|++++++......+...++.++..++-|..||. .|+..+++..+..+..+..+|
T Consensus 125 ~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 125 LAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8889999999999999999999999999999999999999976 566666666777777777788
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.3e-11 Score=106.64 Aligned_cols=150 Identities=17% Similarity=0.026 Sum_probs=119.7
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWL 334 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 334 (437)
+.... +.+.....+..++.++++|++.||+.|++++.++..+-.++.+...+....+.+.++-...+.+- .+.++...
T Consensus 66 ~~s~~-Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s 144 (493)
T KOG1330|consen 66 SDSEL-GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPS 144 (493)
T ss_pred Cchhc-cchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchh
Confidence 44555 78999999999999999999999999999999999999999999888877666666655555553 57788888
Q ss_pred cccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cc-hhhHHHHHHHHHHHHhhhccccCCCCCHH
Q 047673 335 VPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFK-AG-VFFFFGGWLIAMTTFVHFFLPETKNVPIE 406 (437)
Q Consensus 335 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (437)
+++|.+|.++|++.+++.+.....|..++-.....+.+..+ |. .+...+++.++++++..++.+|..++..+
T Consensus 145 ~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~ 218 (493)
T KOG1330|consen 145 LIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARD 218 (493)
T ss_pred HhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccccc
Confidence 89999999999999999999999988877766666666655 43 56666666777777777777776654333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.9e-09 Score=97.59 Aligned_cols=126 Identities=13% Similarity=0.101 Sum_probs=97.9
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccccccc
Q 047673 257 ESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWLV 335 (437)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 335 (437)
..+. +...+...+...++.++.|++.||+|||+.+..+.++.+++.++.....+.+...+.-...+.+. ...+....+
T Consensus 54 ~~~~-g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 132 (394)
T PRK10213 54 EGVA-GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASL 132 (394)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4455 77778888999999999999999999999999999999888877766554443333333333333 234555667
Q ss_pred ccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 047673 336 PSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFG 383 (437)
Q Consensus 336 ~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 383 (437)
+.|.+|+++|+++.++......++..++|++.+.+.+..+|...+...
T Consensus 133 i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~ 180 (394)
T PRK10213 133 TMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAA 180 (394)
T ss_pred HHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 789999999999999999999999999999999999888876444443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.9e-09 Score=98.96 Aligned_cols=143 Identities=14% Similarity=0.164 Sum_probs=102.3
Q ss_pred chHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccccc
Q 047673 258 STSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFL-WWPLGWLVP 336 (437)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 336 (437)
.+. +...+...++..++.++.|+++||+|||+.+..+.+...++........+........+..+.+.+ ..+....++
T Consensus 38 ~~~-~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i 116 (392)
T PRK10473 38 AQL-HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAIL 116 (392)
T ss_pred HHH-HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344 677788888899999999999999999999999988888887777665543322222223333322 233455677
Q ss_pred cccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccch-hhHHHHHHHHHHHHhhhccccCC
Q 047673 337 SEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGV-FFFFGGWLIAMTTFVHFFLPETK 401 (437)
Q Consensus 337 ~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~ 401 (437)
.|.+|+++|+++.++.+....++..++|.+.+.+.+..+|.. +.+.+++..+..++.....+|++
T Consensus 117 ~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 117 RDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 899999999999999999999998888888887777777654 44444444555555555566553
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.9e-09 Score=97.77 Aligned_cols=144 Identities=19% Similarity=0.130 Sum_probs=105.8
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWL 334 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 334 (437)
+..+. +...+...++..++.++.|+++||+|||+.+..+.++.+++...+....+........+..+++. ...+....
T Consensus 24 s~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 102 (377)
T PRK11102 24 SAGSV-QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINA 102 (377)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555 78888889999999999999999999999999999988888888776655443333333333333 23344456
Q ss_pred cccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh-hHHHHHHHHHHHHhhhccccC
Q 047673 335 VPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVF-FFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 335 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 400 (437)
+..|.+|+++|+++.++.+....++..+++.+.+.+.+..++... ...+....+..+......+|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 103 LMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPET 169 (377)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 678999999999999999999999999999999999888786544 444444444444444555554
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.5e-09 Score=99.77 Aligned_cols=127 Identities=17% Similarity=0.119 Sum_probs=98.8
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccccccc
Q 047673 257 ESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWLV 335 (437)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 335 (437)
..+. +...+...++..++.++.|+++||+|||+.+..+.+..+++.+......+.....+.-+..+.+. ...+....+
T Consensus 52 ~~~~-~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~ 130 (426)
T PRK12307 52 DMEG-AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTY 130 (426)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3445 77888888999999999999999999999999999999998888777666554444444444433 234445566
Q ss_pred ccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH
Q 047673 336 PSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGG 384 (437)
Q Consensus 336 ~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 384 (437)
..|.+|+++|+++.++......+|..+++.+.+.+.+..+|...+.+..
T Consensus 131 ~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~ 179 (426)
T PRK12307 131 AVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGL 179 (426)
T ss_pred HHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence 7899999999999999999889999999988888887777765554443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.7e-09 Score=95.67 Aligned_cols=115 Identities=15% Similarity=0.090 Sum_probs=86.4
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccccccccc
Q 047673 257 ESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVM-ATQLVLICVYNAGFTFLWWPLGWLV 335 (437)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (437)
..+. +.......++..++.++.|+++||+|||+.+..+.++..++.+.+.... +.....+..+..+.+.+..+....+
T Consensus 36 ~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 114 (366)
T TIGR00886 36 TAQL-GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPW 114 (366)
T ss_pred HHHh-hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHH
Confidence 3444 7888888999999999999999999999999999999999888877766 4443333333333333333334566
Q ss_pred ccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047673 336 PSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLY 372 (437)
Q Consensus 336 ~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 372 (437)
+.|.+|+++|+++.++.....++|..+++.+.+.+..
T Consensus 115 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 115 ISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred HHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 7899999999999999988888877777777666554
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.3e-09 Score=101.03 Aligned_cols=143 Identities=17% Similarity=0.008 Sum_probs=101.7
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhh-cccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMA--TQLVLICVYNAGFTF-LWWPLG 332 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~ 332 (437)
+..+. +.+.....++..++.++.|++.||+|+|+.+..+.++..++.++...... .....+.-+..+.+. ...+..
T Consensus 74 s~~~~-g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~ 152 (465)
T TIGR00894 74 SGALQ-GLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPAT 152 (465)
T ss_pred CHHHh-hHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhH
Confidence 45555 78888999999999999999999999999999888887777666544322 112222333333332 344555
Q ss_pred cccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccchhhH-HHHHHHHHHHHhhhcccc
Q 047673 333 WLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHF-KAGVFFF-FGGWLIAMTTFVHFFLPE 399 (437)
Q Consensus 333 ~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~~~~~~~~~~~~~~~~~ 399 (437)
..+++|.+|+++|+++.|+......+|..+++++.+.+.+.. +|...+. .++..++..++.+.+.++
T Consensus 153 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 153 HKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 667789999999999999999999999999999999998874 7664444 334333333333333433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.9e-09 Score=102.51 Aligned_cols=140 Identities=15% Similarity=0.108 Sum_probs=99.2
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccccccc
Q 047673 257 ESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFL-WWPLGWLV 335 (437)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 335 (437)
..+. +...+...++.+++.++.|+++||+|||+++..+.++..++.++..+..+.....+..+..+++.+ ..+....+
T Consensus 126 ~~~~-~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~ 204 (505)
T TIGR00898 126 AWKV-DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVL 204 (505)
T ss_pred HHHH-HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHH
Confidence 4455 788999999999999999999999999999999998888888777766555444444444444443 35566778
Q ss_pred ccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhccccC
Q 047673 336 PSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 336 ~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (437)
+.|.+|++.|+.+.++......+|..+++.+...+.+ |...+....+..+...+..+++||+
T Consensus 205 ~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~~~~~es 266 (505)
T TIGR00898 205 NTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWFVPES 266 (505)
T ss_pred hheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999877777777776665544332 4433333333333334444566664
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1e-08 Score=96.73 Aligned_cols=139 Identities=16% Similarity=0.069 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCC
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFLWWPLGWLVPSEIFP 341 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (437)
+.......+...++.++.|+++||+|||+.+..+.+..+++.+++....+.....+.....+.+.+..+.......+.+|
T Consensus 57 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 136 (408)
T PRK09874 57 GLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVP 136 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcC
Confidence 56777888889999999999999999999999888888887777666544443322322333333334444556678899
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccch-hhHHHHHHHHHHHHhhhccccC
Q 047673 342 LEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGV-FFFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 342 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~ 400 (437)
+++|+++.++.+....++..+++.+.+.+.+..++.. ++..++...+..+...++.+++
T Consensus 137 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 137 RNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999888777654 3444443344444444445543
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.6e-09 Score=98.39 Aligned_cols=143 Identities=16% Similarity=0.143 Sum_probs=101.4
Q ss_pred chHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccccccc
Q 047673 258 STSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFLW-WPLGWLVP 336 (437)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 336 (437)
... ....+.+.++..++.++.|+++||+|||+++..+..+..++.+......+.....+.-+..+.+.+. .+....+.
T Consensus 51 ~~~-~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~ 129 (413)
T PRK15403 51 SLA-PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTV 129 (413)
T ss_pred HHH-HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 6677778888999999999999999999999999888888877776665544333333333333222 33445667
Q ss_pred cccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhh-HHHHHHHHHHHHhhhccccCC
Q 047673 337 SEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFF-FFGGWLIAMTTFVHFFLPETK 401 (437)
Q Consensus 337 ~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~ 401 (437)
.|.+|++++++++++.+....++..++|.+.+.+.+..+|...+ ..++...+..+...+.+||++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 130 QEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETV 195 (413)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 89999999999999999999999999988888888877775444 334333333333344566654
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.2e-09 Score=96.61 Aligned_cols=136 Identities=10% Similarity=0.012 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCC
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFLWWPLGWLVPSEIFP 341 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (437)
+.......+...+..++.|+++||+|||+++..+..+.+++.+.+....+. ...- ...........|....++.|.+|
T Consensus 41 ~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~-~~~r-~l~G~~~a~~~pa~~a~i~~~~~ 118 (393)
T PRK11195 41 PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP-LLAY-GLVGIGAAAYSPAKYGILTELLP 118 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHcC
Confidence 778888889999999999999999999999999998887776665444332 2211 22222223455666778899999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhccccC
Q 047673 342 LEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 342 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (437)
+++|+++.|+......++..++|.+.|.+.+.. +...+...+.+.+...+..+.+||.
T Consensus 119 ~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~ 176 (393)
T PRK11195 119 GEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLAALFNLFIPRL 176 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999988754 3322222222233333444556654
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-09 Score=99.19 Aligned_cols=143 Identities=18% Similarity=0.139 Sum_probs=101.7
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWL 334 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 334 (437)
+..+. +...+...+...++.++.|+++||+|||+.+..+.++.+++.+...+..+.+......+..+.+. ...+....
T Consensus 30 s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 108 (352)
T PF07690_consen 30 SPSQI-GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNA 108 (352)
T ss_dssp TSHCH-HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccc
Confidence 44555 78888899999999999999999999999999999998888444443233333333333334332 34555667
Q ss_pred cccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccch-hhHHHHHHHHHHHHhhhcccc
Q 047673 335 VPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGV-FFFFGGWLIAMTTFVHFFLPE 399 (437)
Q Consensus 335 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~ 399 (437)
++.|.+|+++|+++.++......++..+++.+.+.+.+..++.. +++.++...+..++...+.++
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~ 174 (352)
T PF07690_consen 109 LIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPE 174 (352)
T ss_dssp HHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC--
T ss_pred cccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhh
Confidence 77899999999999999999999999999999998887777654 444444444444433344443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-09 Score=97.01 Aligned_cols=145 Identities=17% Similarity=0.145 Sum_probs=114.7
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhcccccc
Q 047673 255 LSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAG--FTFLWWPLG 332 (437)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 332 (437)
++..+- +.+.+...+..-++..+.|.++||.+.|..+..++++.++..+++++.....+..++...-+ -+.+..|..
T Consensus 61 lsk~~l-G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~ 139 (448)
T COG2271 61 LSKTQL-GILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCA 139 (448)
T ss_pred CCHHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 366677 99999999999999999999999999999999999999999999999887664444433333 344555654
Q ss_pred cccccccCChhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHhcccch-hhHHHHHHHHHHHHhhhccccCC
Q 047673 333 WLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTV--LAMLYHFKAGV-FFFFGGWLIAMTTFVHFFLPETK 401 (437)
Q Consensus 333 ~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~ 401 (437)
.++ +.-+|+++||+..++-+...++|+.+.+++. +.+.++.+|.. |+.-+++.++.++++++..+++.
T Consensus 140 ~~i-~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 140 RTI-THWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred HHH-HHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 444 7899999999999999999999999999999 88888877664 44555555566666666665443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.7e-09 Score=99.37 Aligned_cols=128 Identities=13% Similarity=0.004 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhh
Q 047673 63 LLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRN 130 (437)
Q Consensus 63 ~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~ 130 (437)
+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+ .......|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 446667788889999999999999999999999999888888888888888876665555 22344567
Q ss_pred cc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCC
Q 047673 131 GT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPE 193 (437)
Q Consensus 131 ~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~e 193 (437)
.. +++|+++.++++....+|..+++.+.+.+.+.. ||+..|++.++..++.++..+++++
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF---GYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88 899999999999999999999988888877543 7999999888777776665555444
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.9e-09 Score=98.09 Aligned_cols=139 Identities=14% Similarity=0.140 Sum_probs=97.9
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhc-CchhHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhc-ccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKL-GRKVLFLLGGIQILVSQVMIGSVMAT-QLVLICVYNAGFTFL-WWPLG 332 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~ 332 (437)
+..++ +...........++.+++|+++||+ |||+.+..+.++..++.+++...... ......+.....+.+ ..+..
T Consensus 43 s~~~a-~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~ 121 (493)
T PRK15462 43 DDNHA-YELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNV 121 (493)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccH
Confidence 45555 6777778888899999999999999 99999999999988887666532211 111111112222222 23444
Q ss_pred cccccccCChh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhh
Q 047673 333 WLVPSEIFPLE--IRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHF 395 (437)
Q Consensus 333 ~~~~~~~~p~~--~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (437)
.++++|.+|++ .|.+++++.+...++|+.++|.+.+.+.+..||...+..+++..+.+++.+.
T Consensus 122 ~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~ 186 (493)
T PRK15462 122 SCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFL 186 (493)
T ss_pred HHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHH
Confidence 56778999875 6999999999999999999999999998888876554444444444444443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-08 Score=97.73 Aligned_cols=138 Identities=14% Similarity=0.021 Sum_probs=99.6
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhcc--ccce-e-eeee-----------
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAAL--DIYM-L-ILGL----------- 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~--~~~~-l-~~~r----------- 122 (437)
|.+....++......++..++.++.|+++||+|||+.++.+.++.+++.++.+... +... . ..+-
T Consensus 302 g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (479)
T PRK10077 302 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 381 (479)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccc
Confidence 66766667777778888999999999999999999999999999888877765431 1111 0 0000
Q ss_pred --cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhc---cCCCcchHHHHHhhHHHHHHHHHh-hccCCCCh
Q 047673 123 --NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQK---IKGGWGWRISLAMAVAPASILTIG-LLFLPETP 195 (437)
Q Consensus 123 --~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~---~~~~~~wr~~f~~~~i~~~~~~~~-~~~l~esp 195 (437)
....++.|.+ +++|++++++......+|.++++.+.+.+.. ..+..+|++.|++.++..++..+. +++.||++
T Consensus 382 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 382 GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred cchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 3457789999 8999999999999999999888766654431 112357888888877665554444 45567764
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-09 Score=103.35 Aligned_cols=142 Identities=20% Similarity=0.185 Sum_probs=105.3
Q ss_pred chHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccc
Q 047673 258 STSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWLVP 336 (437)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 336 (437)
.+. ++......++..++.++.|++.||+|||+.+..+.++..++.++.....+........+..+.+. ...+....++
T Consensus 37 ~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i 115 (485)
T TIGR00711 37 SQV-QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTL 115 (485)
T ss_pred hhh-hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 444 78888899999999999999999999999999999998888887776655443333333334333 3345556777
Q ss_pred cccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhh-HHHHHHHHHHHHhhhccccC
Q 047673 337 SEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFF-FFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 337 ~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 400 (437)
.|.+|++.|+++.++......++..+++.+.+.+.++.+|...+ .......+..++..+..+++
T Consensus 116 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 116 LNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRD 180 (485)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCc
Confidence 89999999999999999999999999999999998888865433 33333333334444445544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.1e-09 Score=101.11 Aligned_cols=132 Identities=16% Similarity=-0.008 Sum_probs=95.5
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHH--hhccccceeeeee------------c
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIG--GAALDIYMLILGL------------N 123 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~--~~a~~~~~l~~~r------------~ 123 (437)
|++..+.++..+...++..++.+++|+++||+|||+.+.....+..++..+. ...++...+.+.+ .
T Consensus 290 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 369 (467)
T PRK09556 290 GFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLL 369 (467)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHH
Confidence 8899999999999999999999999999999999988766554444333222 2334444333333 1
Q ss_pred chhhhhhcc-cccccchHHHHHHHHHH-HHHHHHHHHhhhhcc---------CCCcchHHHHHhhHHHHHHHHHhhc
Q 047673 124 APISLRNGT-PKHIGGFNIGFQVCVAT-GILSANLLNYGTQKI---------KGGWGWRISLAMAVAPASILTIGLL 189 (437)
Q Consensus 124 ~~~~i~~~~-~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l~~~---------~~~~~wr~~f~~~~i~~~~~~~~~~ 189 (437)
......|.. +++||.+.|+.+....+ |..++|.+.+.+.+. ....+|+..|++..+..+++.+..+
T Consensus 370 ~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 370 IGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 124567888 88999999999888776 778899888888761 0024799999887666666554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.7e-09 Score=96.97 Aligned_cols=132 Identities=12% Similarity=0.028 Sum_probs=102.2
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cch
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAP 125 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~ 125 (437)
|++..+.+.+.+.+.++..++.+..|+++||+|||+.+.....+..+...+....++...+.+.. ...
T Consensus 237 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 316 (394)
T PRK03699 237 GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTII 316 (394)
T ss_pred CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999888877777766666667665443332 222
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCC
Q 047673 126 ISLRNGTPKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLP 192 (437)
Q Consensus 126 ~~i~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~ 192 (437)
++..|..++++++..+....+..+|..++|.+.+.+.+.. ||+..+++.++..++..+....++
T Consensus 317 ~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 317 TLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHF---GLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred HHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh---CchhhhhhhHHHHHHHHHHHHHHH
Confidence 3344444666778888888888999999999999888654 799998887766666655555444
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.8e-09 Score=96.54 Aligned_cols=130 Identities=10% Similarity=0.026 Sum_probs=94.7
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHH-HHHHHHHHHHHHHhh-----ccccceeeeee---------
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASIL-VGGTTFLTSSAIGGA-----ALDIYMLILGL--------- 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~-~~~~~~~~~~~~~~~-----a~~~~~l~~~r--------- 122 (437)
|++..+.+.+.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...+ .++++.+++..
T Consensus 253 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 332 (402)
T TIGR00897 253 GFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAG 332 (402)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999988764 333333333333322 23444333333
Q ss_pred --cchhhhhhcccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhcc
Q 047673 123 --NAPISLRNGTPKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLF 190 (437)
Q Consensus 123 --~~~~~i~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~ 190 (437)
.....+.|..|++|+++.++.+....+|..++|.+++.+.+.. ||+..+++.++..++..+...+
T Consensus 333 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~---g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 333 YVPLAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF---GAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---chHHHHHHHHHHHHHHHHHHHH
Confidence 2223444534789999999999999999999999999888654 7999998888777665555444
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.1e-09 Score=100.55 Aligned_cols=127 Identities=9% Similarity=-0.087 Sum_probs=99.2
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhh--hchhHHHHH--HHHHHHHHHHHHhhccccceeeeee-----------
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRA--FGRKASILV--GGTTFLTSSAIGGAALDIYMLILGL----------- 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr--~Grr~~~~~--~~~~~~~~~~~~~~a~~~~~l~~~r----------- 122 (437)
|++..+.+++.++..++..+++++.|+++|| +++|+...+ +.++.+++.++...+++++.+++.+
T Consensus 272 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~ 351 (455)
T TIGR00892 272 GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVG 351 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHH
Confidence 7899999999999999999999999999997 344443333 3444455555666778887766656
Q ss_pred -cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHH
Q 047673 123 -NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTI 186 (437)
Q Consensus 123 -~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~ 186 (437)
...+++.|.+ ++++++..++++....+|.++||.+++.+.+..+ +|+..|++.++..++..+
T Consensus 352 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g--~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 352 ALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK--NYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC--CcchHHHHhhHHHHHHHH
Confidence 4456778889 8999999999999999999999999998876543 699999887766555443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-08 Score=95.32 Aligned_cols=142 Identities=13% Similarity=0.073 Sum_probs=103.2
Q ss_pred chHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccccc
Q 047673 258 STSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFL-WWPLGWLVP 336 (437)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 336 (437)
.+. +...+...++..++.++.|++.||+|||+.+..+..+.+++.++.....+.....+..+..+.+.+ ..+......
T Consensus 38 ~~~-g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 116 (382)
T PRK10091 38 PAA-GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVL 116 (382)
T ss_pred HHH-hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344 788888999999999999999999999999999999999888887776655533333333333322 233444566
Q ss_pred cccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh-hHHHHHHHHHHHHhhhccccC
Q 047673 337 SEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVF-FFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 337 ~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 400 (437)
.|.+|+++|+++++.......++..+++++.+.+.+..+|... .+.++...+..+......||.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~ 181 (382)
T PRK10091 117 SKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDI 181 (382)
T ss_pred HHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 7889999999999999988899999999998888887776543 333443344444444556654
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.7e-09 Score=97.88 Aligned_cols=122 Identities=10% Similarity=-0.036 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhc
Q 047673 64 LAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNG 131 (437)
Q Consensus 64 ~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~ 131 (437)
.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.++++. ...+.+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45666677888899999999999999999999999999999888888888776655554 233456788
Q ss_pred c-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhh
Q 047673 132 T-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGL 188 (437)
Q Consensus 132 ~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~ 188 (437)
+ +++||++.++++....+|..+++.+.+.+.+.. ||+..|.+.++..++..+..
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF---GYPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CchHHHHHHHHHHHHHHHHH
Confidence 8 899999999999999999999999999888654 79999999887766655543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-08 Score=99.03 Aligned_cols=142 Identities=14% Similarity=0.083 Sum_probs=100.9
Q ss_pred chHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccc
Q 047673 258 STSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWLVP 336 (437)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 336 (437)
.+. .+....+.++..++.++.|+++||+|||+.+..+..+..++.+......+.......-...+.+. ...+......
T Consensus 41 ~~~-~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l 119 (495)
T PRK14995 41 NEL-LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGI 119 (495)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 67777888888889999999999999999999999999998888877665553333333333332 2233333333
Q ss_pred ccc-CChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHHHhhhccccC
Q 047673 337 SEI-FPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFF-GGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 337 ~~~-~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~ 400 (437)
.+. .|+++|+++.|+......++..++|.+.+.+.++.+|...+.. ..+..+..++..+++|+.
T Consensus 120 ~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 120 RATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 344 4789999999999999999999999999999998887644433 333344444444555654
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=94.58 Aligned_cols=127 Identities=13% Similarity=0.053 Sum_probs=98.1
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cch
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAP 125 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~ 125 (437)
|.+..+.+++.+...++..+++++.|++.||+|+|+++..+..+..++.+... ... ...... ...
T Consensus 231 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~~-~~~~~~~l~g~~~~~~~p~~~ 307 (381)
T PRK03633 231 GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQA-AMAPALFILGAAGFTLYPVAM 307 (381)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hhH-HHHHHHHHHHHHHHhHHHHHH
Confidence 77889999999999999999999999999999999999888887777665443 111 111111 445
Q ss_pred hhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhcc
Q 047673 126 ISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLF 190 (437)
Q Consensus 126 ~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~ 190 (437)
+++.|.. +++++...+.+..+.++|.++||.+++.+.+.. +|++.|.+.+...++..+..++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~---g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 308 AWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY---SDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHh
Confidence 5567777 777777888888889999999999999987654 7999998877776665555444
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.2e-09 Score=99.85 Aligned_cols=135 Identities=12% Similarity=-0.014 Sum_probs=103.7
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhh---c--c------ccceeeeee----
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGA---A--L------DIYMLILGL---- 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---a--~------~~~~l~~~r---- 122 (437)
|++..+.++......++..++.++.|+++||+|||+.+.++.++.+++.++..+ . + +...+....
T Consensus 315 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (481)
T TIGR00879 315 GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIA 394 (481)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHH
Confidence 678888899999999999999999999999999999999988888877776652 1 1 111111111
Q ss_pred --------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHh-hccCC
Q 047673 123 --------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIG-LLFLP 192 (437)
Q Consensus 123 --------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~-~~~l~ 192 (437)
....++.|.+ +++|+++.++......+|.++++.+.+.+.+.. +|++.|++.++.+++..+. .++.|
T Consensus 395 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~---~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 395 FFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI---GVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred HHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CccceehhHHHHHHHHHHHHheecc
Confidence 3345668999 889999999999999999999999988876543 7999888877776665554 45567
Q ss_pred CCh
Q 047673 193 ETP 195 (437)
Q Consensus 193 esp 195 (437)
|++
T Consensus 472 ~~~ 474 (481)
T TIGR00879 472 ETK 474 (481)
T ss_pred cCC
Confidence 654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=98.33 Aligned_cols=131 Identities=13% Similarity=0.073 Sum_probs=99.5
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccccccc
Q 047673 257 ESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWLV 335 (437)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 335 (437)
..+. +.......++..++.++.|+++||+|||+.+..+.++.+++.+......+.....+..+..+++. +..+....+
T Consensus 54 ~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~ 132 (496)
T PRK03893 54 TVQA-ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATY 132 (496)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445 67788888899999999999999999999999998888888887777655543333333334332 233444566
Q ss_pred ccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHH
Q 047673 336 PSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIA 388 (437)
Q Consensus 336 ~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 388 (437)
+.|.+|++.|+++.++......++..+++.+.+.+.+..+|...+.+..+..+
T Consensus 133 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~ 185 (496)
T PRK03893 133 VIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPII 185 (496)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999998888887655554443333
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-08 Score=94.43 Aligned_cols=144 Identities=17% Similarity=0.091 Sum_probs=101.1
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccccccc
Q 047673 257 ESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFL-WWPLGWLV 335 (437)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 335 (437)
..+. +.......++..++.++.|+++||+|||+.+..+.....++.+......+........+..+.+.+ ..+.....
T Consensus 47 ~~~~-~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~ 125 (406)
T PRK15402 47 AEWV-PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAA 125 (406)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHH
Confidence 3444 677788889999999999999999999999999888888887776665544433333333333322 23444566
Q ss_pred ccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHHHHhhhccccCC
Q 047673 336 PSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFF-FGGWLIAMTTFVHFFLPETK 401 (437)
Q Consensus 336 ~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~ 401 (437)
..|.+|++.|.++.++......++..++|.+.+.+.+..+|...+. .++...+.....+...||++
T Consensus 126 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 126 IQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 6899999999999999888888888999999888888777654443 34444444443444556553
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.5e-07 Score=79.11 Aligned_cols=133 Identities=14% Similarity=0.158 Sum_probs=96.3
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhc-------cccceeeeee--------
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAA-------LDIYMLILGL-------- 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a-------~~~~~l~~~r-------- 122 (437)
|+|.+|...+.+.-.+|..+| ++.|.+.|++|++.++.+|.+...+|..+...+ .++|.+.+..
T Consensus 33 ~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~ 111 (250)
T PF06813_consen 33 GYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSC 111 (250)
T ss_pred CCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHH
Confidence 899999999999999999874 889999999999999999999999998887654 2344444333
Q ss_pred ----cchhhhhhcccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCC
Q 047673 123 ----NAPISLRNGTPKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPET 194 (437)
Q Consensus 123 ----~~~~~i~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~es 194 (437)
.+.....+.+|++||.+.++.-...+++..+-..+...+.+.. .-+..+.....+.++.++..+++++.
T Consensus 112 ~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~---~~~fll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 112 WFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD---PSSFLLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred HhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHHHHHHhhheecc
Confidence 1112223445899999999999999998887666655554332 34455555555565555555555443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.1e-08 Score=92.98 Aligned_cols=142 Identities=13% Similarity=0.046 Sum_probs=100.8
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWL 334 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 334 (437)
+.... +.......+...+..++.|+++||+|||+++..+..+.+++.+.+....+.+.+.......+.+. ...+....
T Consensus 44 s~~~~-gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~ 122 (400)
T PRK11646 44 AAVMV-GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTA 122 (400)
T ss_pred cHHHH-HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455 77778888888888999999999999999999999999888888776554443333333333332 23344456
Q ss_pred cccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccch-hhHHHHHHHHHHHHhhhcccc
Q 047673 335 VPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGV-FFFFGGWLIAMTTFVHFFLPE 399 (437)
Q Consensus 335 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~ 399 (437)
++.|.+|+++|+++.|+......++..++|.+.+.+. ..++.. +++.+....+..++.....|+
T Consensus 123 ~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 123 LVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 6689999999999999999999999999999999888 556544 333333333333333444454
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.91 E-value=2e-08 Score=96.22 Aligned_cols=140 Identities=11% Similarity=0.097 Sum_probs=102.5
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhh-cCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADK-LGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFL-WWPLGW 333 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 333 (437)
+..+. +.......+...++.+++|+++|| +|||+++..+.++.+++.+++....+...........+.+.+ ..+...
T Consensus 46 s~~~a-g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~ 124 (475)
T TIGR00924 46 SQEQA-FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPS 124 (475)
T ss_pred CHHHH-HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHH
Confidence 45566 888889999999999999999999 899999999999999988877765443333233333333333 344555
Q ss_pred ccccccCChh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhc
Q 047673 334 LVPSEIFPLE---IRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFF 396 (437)
Q Consensus 334 ~~~~~~~p~~---~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (437)
.+.++.+|++ .|+++.++.+...++|..+++.+.+.+.++.+|...+...++..+.+.+.+.+
T Consensus 125 ~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~ 190 (475)
T TIGR00924 125 SMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFA 190 (475)
T ss_pred HHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 6667888765 38889999999999999999999999998888765544444444444444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-08 Score=95.39 Aligned_cols=135 Identities=14% Similarity=0.037 Sum_probs=107.5
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cch
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAP 125 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~ 125 (437)
|.+..+.|++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.+.++. ...
T Consensus 255 g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 334 (417)
T PRK10489 255 QMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQY 334 (417)
T ss_pred CCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999998888888888888888888887777765544443 223
Q ss_pred hhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHH-HHHHHHHhhccCCCCh
Q 047673 126 ISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVA-PASILTIGLLFLPETP 195 (437)
Q Consensus 126 ~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i-~~~~~~~~~~~l~esp 195 (437)
+++.|.. +++||++.+++.....+|..+|+.+.+.+.+.. |++..+++.+. ..++..+....+||.+
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 335 TLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM---TPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh---chhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 5667888 788999999999999999999999999988654 67777776554 4444555556666654
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.6e-08 Score=92.74 Aligned_cols=125 Identities=15% Similarity=0.044 Sum_probs=92.0
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccccccc
Q 047673 257 ESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFL-WWPLGWLV 335 (437)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 335 (437)
..+. +...+...++..++.++.|+++||+|||+.+..+..+..++.+......+.....+..+..+.+.+ ..+.....
T Consensus 40 ~~~~-g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~ 118 (401)
T PRK11043 40 ASAV-SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQAL 118 (401)
T ss_pred HHHH-HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3445 788888899999999999999999999999998888888777766665444333322233232221 22233455
Q ss_pred ccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH
Q 047673 336 PSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFF 382 (437)
Q Consensus 336 ~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 382 (437)
..|.+|++.++...+..+....++..++|.+.+.+.+..+|...+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~ 165 (401)
T PRK11043 119 VIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFAT 165 (401)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 67899999889999988888889999999999999888887644433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.4e-08 Score=93.14 Aligned_cols=136 Identities=11% Similarity=-0.012 Sum_probs=94.8
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhh---cc-ccceeeeee-----------
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGA---AL-DIYMLILGL----------- 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---a~-~~~~l~~~r----------- 122 (437)
|++......+.....+...++.++.|+++||+|||+.+..+.++..++.+.... .. +...+++..
T Consensus 282 g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 361 (438)
T PRK09952 282 GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVV 361 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 667766666666667777889999999999999999988887666555433322 12 222222111
Q ss_pred -cchhhhhhcc-cccccchHHHH-HHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCC
Q 047673 123 -NAPISLRNGT-PKHIGGFNIGF-QVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPET 194 (437)
Q Consensus 123 -~~~~~i~~~~-~~~r~~~~~~~-~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~es 194 (437)
...+++.|.+ .+.|+...++. ..+..+|..++|.+.+.+.+..+ .+|+..+...++..++..+..+.++|+
T Consensus 362 ~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~-~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 362 CVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG-GSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 3556788999 88898888884 45566899999999988865432 258888887777777766666666664
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.7e-08 Score=92.26 Aligned_cols=136 Identities=13% Similarity=0.006 Sum_probs=101.2
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhcc-cccee-eeee---------cchh
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAAL-DIYML-ILGL---------NAPI 126 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~-~~~~l-~~~r---------~~~~ 126 (437)
|++..+.|...+.+.++..++.++.|++.||+|||+.+.++..+..++.++....+ +...+ ...- ....
T Consensus 236 g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~ 315 (393)
T PRK09705 236 GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLWAMVCGLGLGGAFPLCLL 315 (393)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHhccchHHHHHH
Confidence 78999999999999999999999999999999999999888888777766554322 21111 1111 2223
Q ss_pred hhhhcc--cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHh-hccCCCCh
Q 047673 127 SLRNGT--PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIG-LLFLPETP 195 (437)
Q Consensus 127 ~i~~~~--~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~-~~~l~esp 195 (437)
...+.. +++|++..++.+....++..++|.+.+.+.+..+ +|+..|.+.++..++.... ..+.||++
T Consensus 316 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 316 LALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG--NYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 444555 4678999999999999999999999999887654 5888888876665554443 45667764
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.2e-08 Score=94.21 Aligned_cols=114 Identities=11% Similarity=0.008 Sum_probs=80.8
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFLWWPLGWLV 335 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (437)
+..+. +...+...++..++.++.|+++||+|||+.+..+.++..++.++..+..+.....+..+..+++.+.......+
T Consensus 69 s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~ 147 (476)
T PLN00028 69 TKSDI-GNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYW 147 (476)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34455 66677778888999999999999999999998888888877776666544433323333333333222222345
Q ss_pred ccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047673 336 PSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAM 370 (437)
Q Consensus 336 ~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 370 (437)
++|.+|++.|++++|+.+...++++.+++.+.+.+
T Consensus 148 i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i 182 (476)
T PLN00028 148 MSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV 182 (476)
T ss_pred HHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999888888887777666544
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-08 Score=96.14 Aligned_cols=144 Identities=14% Similarity=0.064 Sum_probs=98.1
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhc-ccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVM----ATQLVLICVYNAGFTFL-WWP 330 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~ 330 (437)
+..+. +.......++..++.++.|+++||+|||+.+..+.++.+++.+...... .........+..+.+.+ ..+
T Consensus 59 s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~ 137 (438)
T TIGR00712 59 SKGEL-GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWP 137 (438)
T ss_pred CHhHh-HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchH
Confidence 55666 8888899999999999999999999999999888888877776655432 11112222222222222 223
Q ss_pred cccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cccchhh-HHHHHHHHHHHHhhhccccC
Q 047673 331 LGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYH-FKAGVFF-FFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 331 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 400 (437)
.....+.|.+|+++|++++|+.+....+++.+++++.+...+. .+|...+ ..+++..+..++..++++|+
T Consensus 138 ~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 138 PCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3345557899999999999999999999999998887765543 4665444 44444445455555555554
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.1e-09 Score=91.69 Aligned_cols=146 Identities=11% Similarity=0.068 Sum_probs=115.3
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFLW-WPLGWL 334 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 334 (437)
+..+. +.+....++.+++.+++.|.+.||+|+|..+++++.++..+.+++.+....+..++.-...+.+..+ ......
T Consensus 104 e~~~i-G~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgla 182 (464)
T KOG3764|consen 104 ENTQI-GLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLA 182 (464)
T ss_pred cccch-hHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHH
Confidence 33444 8999999999999999999999999999999999999999999999988777555554444444433 333456
Q ss_pred cccccCChhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHHhhhccccCCC
Q 047673 335 VPSEIFPLEI-RSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAG-VFFFFGGWLIAMTTFVHFFLPETKN 402 (437)
Q Consensus 335 ~~~~~~p~~~-r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (437)
+.++.+|++. |++++|+.-.+..+|-.++|++.|.+++..|+. +|.+++.++++-..+..+.++.++.
T Consensus 183 mlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 183 MLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred HHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 6789998865 699999999999999999999999999999954 6666666666666666555554433
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.7e-08 Score=94.13 Aligned_cols=140 Identities=17% Similarity=0.127 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhcc-ccccccccc
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ---LVLICVYNAGFTFLW-WPLGWLVPS 337 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~ 337 (437)
.....+..+++++|++..++++||+|||..+.+..++..++.++........ .+.+.-+..+...+. ......+..
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~ 142 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLT 142 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 5778888999999999999999999999999988888888777776655443 333333333333322 223456778
Q ss_pred ccCChhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHhcc-cchhhHHHHHHHHHHHHhhhccccCC
Q 047673 338 EIFPLEIRSAGKSITVAVGLLFTSLVAQTV-LAMLYHFK-AGVFFFFGGWLIAMTTFVHFFLPETK 401 (437)
Q Consensus 338 ~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (437)
|+.|.+.||....+......+|..++..+. ..+..+.. |.....+..+..+...+...++||..
T Consensus 143 E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESP 208 (485)
T KOG0569|consen 143 EISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESP 208 (485)
T ss_pred hcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999998888887777777764433 33433333 55555555555666666777788864
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.3e-08 Score=93.68 Aligned_cols=144 Identities=13% Similarity=0.071 Sum_probs=93.6
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhc-ccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVM----ATQLVLICVYNAGFTFL-WWP 330 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~ 330 (437)
+..+. +...+...++..++.++.|+++||+|||+++..+.++.+++.+.+.... +........+..+.+.+ ..+
T Consensus 61 s~~~~-g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~ 139 (452)
T PRK11273 61 SRGDL-GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWP 139 (452)
T ss_pred CHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccch
Confidence 55566 8888999999999999999999999999999999988888877766542 12122222222222222 223
Q ss_pred cccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHhcccc-hhhHHHHHHHHHHHHhhhccccC
Q 047673 331 LGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVL-AMLYHFKAG-VFFFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 331 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~ 400 (437)
.......|.+|++.|++++|+.+....+++.+.+++.+ ......+|. .+++.+++..+..++..++++|+
T Consensus 140 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 140 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDT 211 (452)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 22344578899999999999998888888755555443 222233554 33343444444445555556654
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.5e-08 Score=90.81 Aligned_cols=126 Identities=11% Similarity=0.012 Sum_probs=103.7
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cch
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAP 125 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~ 125 (437)
|.+..+.|.+.+...++..++.++.+++.||+|+|+.+.++.++..+..++.++++|.+.+++.+ ...
T Consensus 236 g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~ 315 (382)
T TIGR00902 236 GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999998888777 445
Q ss_pred hhhhhcccccccchHHHHH-HHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHh
Q 047673 126 ISLRNGTPKHIGGFNIGFQ-VCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIG 187 (437)
Q Consensus 126 ~~i~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~ 187 (437)
.++.+.-+++|++..++++ ...++|.++++.+++.+.+.. |+ ..|++.++.+++.+++
T Consensus 316 ~~i~~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~---g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 316 RYIAAQPGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL---GA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cH-HHHHHHHHHHHHHHHH
Confidence 5566543566788888876 578899999999999998654 55 4455555555554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.3e-08 Score=94.00 Aligned_cols=141 Identities=14% Similarity=0.114 Sum_probs=99.3
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhh-cCchhHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhh-cccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADK-LGRKVLFLLGGIQILVSQVMIGSVMATQ-LVLICVYNAGFTF-LWWPLG 332 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~ 332 (437)
+..+. ......+.....+..+++|+++|| +|||+++..+.++..++.+.+....... .+.......+.+. ...+..
T Consensus 48 ~~~~a-~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~ 126 (489)
T PRK10207 48 SQEQA-FITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANP 126 (489)
T ss_pred CHHHH-HHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCH
Confidence 34444 566666666777778899999999 9999999999999999888877654322 2222233333333 234445
Q ss_pred cccccccCChh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhcc
Q 047673 333 WLVPSEIFPLE--IRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFL 397 (437)
Q Consensus 333 ~~~~~~~~p~~--~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (437)
..++.|.+|++ .|+.++++.+...++|..++|.+.+.+.++.||+..+....+..+..++.+...
T Consensus 127 ~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~ 193 (489)
T PRK10207 127 ASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFAC 193 (489)
T ss_pred HHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHc
Confidence 66778999877 457789999999999999999999999998887655544444444444444333
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.6e-08 Score=90.76 Aligned_cols=145 Identities=13% Similarity=0.056 Sum_probs=100.4
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFL-WWPLGWL 334 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 334 (437)
+..+. +.......+...++.++.|+++||+|||+.+..+.....++.+......+.....+..+..+.+.+ ..+....
T Consensus 41 s~~~~-~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 119 (394)
T PRK11652 41 REGAV-QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMART 119 (394)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33455 778888899999999999999999999999999888888877776655444333333333333222 2233445
Q ss_pred cccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHHHhhhccccCC
Q 047673 335 VPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFF-GGWLIAMTTFVHFFLPETK 401 (437)
Q Consensus 335 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~ 401 (437)
+..|.++++.++.+.+..+....++..++|.+.+.+.+..+|...+.. ++...+...+..++.||++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 120 LPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 567888888999999998888888888999998888887776544433 3333334444445556643
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-07 Score=87.88 Aligned_cols=143 Identities=13% Similarity=-0.001 Sum_probs=106.3
Q ss_pred ccch-HHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 047673 256 SEST-SLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFLWWPLGWL 334 (437)
Q Consensus 256 ~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (437)
+..+ . +.+...+..+..+..+++|+++||+|.|+++..+.+...+..++..+........++-+..|.+-+.......
T Consensus 59 T~~qv~-G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~s 137 (511)
T TIGR00806 59 TEETVT-NEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSS 137 (511)
T ss_pred CHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 4 7888899999999999999999999999999999999988888888875544333332333332222225566
Q ss_pred cccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh---hHHHHHHHHHHHHhhhccccC
Q 047673 335 VPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVF---FFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 335 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~ 400 (437)
++...+|++.|++++|+.+....+|.++++++.+. ....+|..+ ..+.....+.+.+..+++|..
T Consensus 138 yI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~ 205 (511)
T TIGR00806 138 YIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRP 205 (511)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 77899999999999999999999999999999998 556675433 334444555566666777743
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.2e-08 Score=90.97 Aligned_cols=127 Identities=13% Similarity=0.113 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhccccccccccccc
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ--LVLICVYNAGFTFLWWPLGWLVPSEI 339 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (437)
+......-.+.++.-++.+++.+|+|+-+++..++.+..+-.+.+....+.+ +.+-.+-.+..+..+..+ .+|++..
T Consensus 409 Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~-~sY~s~v 487 (618)
T KOG3762|consen 409 GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAI-ISYASHV 487 (618)
T ss_pred eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 3444455567788888999999999999999999999999888888887776 333334444444444443 4667889
Q ss_pred CChhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhccc-chhhHHHHHHHHH
Q 047673 340 FPLEIRSAGKSITVAV-GLLFTSLVAQTVLAMLYHFKA-GVFFFFGGWLIAM 389 (437)
Q Consensus 340 ~p~~~r~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~ 389 (437)
.||+.|.++.++.... ..+|-.+++.+.|.+.+..+. ..+.++++.+++.
T Consensus 488 aPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~ 539 (618)
T KOG3762|consen 488 APPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVT 539 (618)
T ss_pred CCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHH
Confidence 9999999999998764 456777788888888887773 3455555544443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.7e-08 Score=93.51 Aligned_cols=134 Identities=14% Similarity=0.069 Sum_probs=100.2
Q ss_pred cCChhHHHHHHH-HHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHH---hhc-cccceee---ee------e-
Q 047673 58 KFDSQLLAAFTS-SLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIG---GAA-LDIYMLI---LG------L- 122 (437)
Q Consensus 58 ~~s~~~~g~~~s-~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~a-~~~~~l~---~~------r- 122 (437)
|++..+.+++.+ ...++..++.+++|+++||+|+|+.+.++.++.+++.++. +.. ++.+.+. .. -
T Consensus 254 G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~ 333 (491)
T PRK11010 254 GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMG 333 (491)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 889999999974 6678999999999999999999998877666555544332 232 3332221 11 1
Q ss_pred --cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCC
Q 047673 123 --NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPET 194 (437)
Q Consensus 123 --~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~es 194 (437)
...++..+.. ++.++...++.+...++|..+++.+++.+.+.. ||+..|.+.++.++..++...+++++
T Consensus 334 ~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~---G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 334 TAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH---GWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677888 888999999999999999988888888887654 79999998888887776666555543
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-07 Score=88.14 Aligned_cols=114 Identities=11% Similarity=0.128 Sum_probs=83.1
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhcccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSV-----MATQLVLICVYNAGFTFLWWP 330 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 330 (437)
+..+. +.+.++..+...+.++..|++.||+|.|+++..+.++..+..+...+. .+.....++-+..+.+....+
T Consensus 68 s~~q~-g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~ 146 (462)
T PRK15034 68 TTDQL-FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFA 146 (462)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHH
Confidence 55566 788888888899999999999999999999999999888888777764 222233333333333333344
Q ss_pred cccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047673 331 LGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAM 370 (437)
Q Consensus 331 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 370 (437)
.....+++.+|+++||++.|+....+++|..+.+.+.+.+
T Consensus 147 ~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~ 186 (462)
T PRK15034 147 SSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLV 186 (462)
T ss_pred HHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4455678999999999999999877777777666655543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.8e-08 Score=92.97 Aligned_cols=138 Identities=15% Similarity=0.065 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccccccC
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWLVPSEIF 340 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 340 (437)
+.......++..++.++.|+++||+|||+.+..+..+..++.+......+...........+.+. ...+....++.|.+
T Consensus 48 ~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~ 127 (471)
T PRK10504 48 HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIV 127 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 56677778888899999999999999999999888887777766555443333333333333332 23445566678999
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH-HHHHHHHHHhhhcccc
Q 047673 341 PLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFG-GWLIAMTTFVHFFLPE 399 (437)
Q Consensus 341 p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~ 399 (437)
|+++|+++.|+......++..++|.+.+.+.++.+|...+... ....+..+......++
T Consensus 128 ~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 128 PREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999888865443333 3333333333333343
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.6e-08 Score=91.84 Aligned_cols=128 Identities=16% Similarity=0.053 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhc-cccccc
Q 047673 263 MSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ--------LVLICVYNAGFTFL-WWPLGW 333 (437)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~ 333 (437)
.......++..+++++.|+++||+|||+.+..+..+..++.+...+.++.. ...++-+..+.+.+ ..+...
T Consensus 67 ~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~ 146 (432)
T PRK10406 67 GVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSA 146 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHH
Confidence 344455566779999999999999999999999999988888776644321 23333334444433 445566
Q ss_pred ccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HhcccchhhHHHHHHHHHH
Q 047673 334 LVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAML--------YHFKAGVFFFFGGWLIAMT 390 (437)
Q Consensus 334 ~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~ 390 (437)
.++.|.+|+++|+...++.......|..+++.+...+. +..+|...+...++..+..
T Consensus 147 ~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 147 TYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 78899999999999988877666666665555433332 2456765555544443333
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9e-08 Score=93.27 Aligned_cols=141 Identities=14% Similarity=0.121 Sum_probs=107.8
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWL 334 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 334 (437)
+.... ....++..++.++|+++.|.++||+|||+++..+.++..++.+...+..+.....++-+..+++. +...+.+.
T Consensus 116 ~~~~~-~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~ 194 (521)
T KOG0255|consen 116 SSTLV-ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFG 194 (521)
T ss_pred cHhHH-HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHh
Confidence 33444 77888899999999999999999999999999999999999988888887776666666656554 44556677
Q ss_pred cccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhccccC
Q 047673 335 VPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 335 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (437)
+..|.++++.|+.+..+ ....+.++..++...+++.. +|........+..+..++.+++.+|.
T Consensus 195 ~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es 257 (521)
T KOG0255|consen 195 LVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPES 257 (521)
T ss_pred hheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcC
Confidence 88999999999999999 88888888889988888877 55444444333333333334555454
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.5e-08 Score=92.47 Aligned_cols=123 Identities=9% Similarity=-0.069 Sum_probs=90.3
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHH--HHHhhc--cccceeeeee-----------
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSS--AIGGAA--LDIYMLILGL----------- 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~--~~~~~a--~~~~~l~~~r----------- 122 (437)
|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+..+..+.. +...+. ++.+.+++..
T Consensus 251 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 330 (394)
T TIGR00883 251 GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYT 330 (394)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Confidence 6788999999999999999999999999999999998776555444333 122221 3444333333
Q ss_pred -cchhhhhhcc-cccccchHHH-HHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHH
Q 047673 123 -NAPISLRNGT-PKHIGGFNIG-FQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPAS 182 (437)
Q Consensus 123 -~~~~~i~~~~-~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~ 182 (437)
...+++.|.+ +++|+++.++ ++.+..+|..++|.+++.+.+..+ .|+..++......+
T Consensus 331 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g--~~~~~~~~~~~~~l 391 (394)
T TIGR00883 331 GPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG--DWYAIGYYLAALAL 391 (394)
T ss_pred hhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC--cchhHHHHHHHHHH
Confidence 5567788999 8899999998 456677899999999998887653 38877666554433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.2e-07 Score=87.57 Aligned_cols=142 Identities=17% Similarity=0.099 Sum_probs=111.9
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhc-ccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ--LVLICVYNAGFTFL-WWPLG 332 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~ 332 (437)
+..+. +.+......+.+++.+.++++.||+|.|+++..+.++.+++.++.+...... .+.++-+..|++.+ ..|..
T Consensus 71 s~~~k-~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~ 149 (466)
T KOG2532|consen 71 SSTEK-GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAI 149 (466)
T ss_pred CHHHH-HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhh
Confidence 55666 8899999999999999999999999999999999999999999988877665 33444444444432 34555
Q ss_pred cccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cccc-hhhHHHHHHHHHHHHhhhccc
Q 047673 333 WLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYH-FKAG-VFFFFGGWLIAMTTFVHFFLP 398 (437)
Q Consensus 333 ~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~~~~~~~ 398 (437)
..+.+.-.|+++|++..++.....++|..+.-++.|.+.+. .||. .+++.+++.++..++.+++..
T Consensus 150 ~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 150 GSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred hceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 66778999999999999999999999999999999999998 7876 455555555555555444443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1e-07 Score=85.49 Aligned_cols=141 Identities=15% Similarity=0.105 Sum_probs=108.8
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhcccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ---LVLICVYNAGFTFLWWPLG 332 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 332 (437)
+..+. ..+..+..+.+.+.+++.|.+.||+|.|++...+.++..+-.+...+....+ ....+-...+.+.+...+.
T Consensus 47 S~~q~-~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~ 125 (417)
T COG2223 47 SEGQK-GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVG 125 (417)
T ss_pred CHHHH-HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcc
Confidence 66677 8899999999999999999999999999999999999888888777765544 4444444455555555666
Q ss_pred cccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cc-hhhHHHHHHHHHHHHhhhccc
Q 047673 333 WLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFK---AG-VFFFFGGWLIAMTTFVHFFLP 398 (437)
Q Consensus 333 ~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g---~~-~~~~~~~~~~~~~~~~~~~~~ 398 (437)
...+++.||++++|.+.|+.. .+++|..+...+.+.+....+ |. ...++.....+..+..++...
T Consensus 126 m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 126 MPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred cccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 677799999999999999998 999999999999888888777 43 344444444444555555543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.7e-07 Score=86.18 Aligned_cols=125 Identities=10% Similarity=0.034 Sum_probs=97.6
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cch
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAP 125 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~ 125 (437)
|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+.+++.+.+++.. ...
T Consensus 236 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 315 (382)
T PRK11128 236 GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999888888888888776666 333
Q ss_pred hhhhhcccccccchHHHHH-HHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHH
Q 047673 126 ISLRNGTPKHIGGFNIGFQ-VCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTI 186 (437)
Q Consensus 126 ~~i~~~~~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~ 186 (437)
.++.+..++++++..+.+. ....+|..+|+.+++.+.+.. |+ ..++..++..++.++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~---g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 316 RYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL---GA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cH-HHHHHHHHHHHHHHH
Confidence 4444544556678888775 666788899999999998665 55 355555555554443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-07 Score=89.91 Aligned_cols=137 Identities=12% Similarity=0.133 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhh-hccccccccc
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ-----LVLICVYNAGFT-FLWWPLGWLV 335 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~ 335 (437)
+.+.....+-.++.++++|.++||++||++++.+-++.++....+....... .+..+.+..+.+ ....|...+.
T Consensus 48 alv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ 127 (524)
T PF05977_consen 48 ALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAI 127 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777788889999999999999999999998888776655555433222 233333333333 3456666778
Q ss_pred ccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhccc
Q 047673 336 PSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLP 398 (437)
Q Consensus 336 ~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 398 (437)
+.|++|+++...+.++.....++...++|.+.|.+....|....+.+.+++.+..+......+
T Consensus 128 ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~ 190 (524)
T PF05977_consen 128 IPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWK 190 (524)
T ss_pred HHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 899999999999999999999999999999999999888855445555555555444444443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.1e-07 Score=86.08 Aligned_cols=127 Identities=10% Similarity=-0.066 Sum_probs=92.3
Q ss_pred cCChhHHHHHHHHHH-HHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhc------cccceeeee-------e-
Q 047673 58 KFDSQLLAAFTSSLY-IAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAA------LDIYMLILG-------L- 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~-l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a------~~~~~l~~~-------r- 122 (437)
|+++++.|++.+... ....++.++.|++.||+|+|+.+..+..+.++..+..... ++...+... .
T Consensus 239 G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 318 (390)
T TIGR02718 239 GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITG 318 (390)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHH
Confidence 889999999988876 4667789999999999999999988776663333322211 121111111 1
Q ss_pred ----cchhhhhhcc-c-ccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHh
Q 047673 123 ----NAPISLRNGT-P-KHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIG 187 (437)
Q Consensus 123 ----~~~~~i~~~~-~-~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~ 187 (437)
.....+.+.. + +++++..+..+...++|..++|.+++.+.+.. ||+..|++.++..++..+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~---G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 319 ITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF---GYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHHHHH
Confidence 2333445666 5 78899999999999999999999999988654 7899998887766665544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.2e-07 Score=86.17 Aligned_cols=126 Identities=10% Similarity=0.074 Sum_probs=98.9
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cch
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAP 125 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~ 125 (437)
+.+..+.|.+.++..+...++.+..|++.||+|||+.+.++.++.+++..+...++|.+.+++.+ ...
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999888878888888777666 112
Q ss_pred hhhhhcc-cccccchHHH-HHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHH
Q 047673 126 ISLRNGT-PKHIGGFNIG-FQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTI 186 (437)
Q Consensus 126 ~~i~~~~-~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~ 186 (437)
.+..+.. ++.++...+. ++....+|..+++.+++.+.+.. ||+..|.+.++..++..+
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~---G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI---GFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc---ccHHHHHHHHHHHHHHHH
Confidence 2334445 5555555555 56888999999999999998654 799999987766655444
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-07 Score=87.85 Aligned_cols=136 Identities=15% Similarity=0.098 Sum_probs=111.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchh--HHHHHHHHHHHHHHHHHhh--------ccccceeeeee----
Q 047673 57 CKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRK--ASILVGGTTFLTSSAIGGA--------ALDIYMLILGL---- 122 (437)
Q Consensus 57 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~--------a~~~~~l~~~r---- 122 (437)
+|++..+...+.-+..+...+|++++|++.||+|.| +++.++.+++.+..+...+ .++-+.+.+.-
T Consensus 312 lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G 391 (477)
T PF11700_consen 312 LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIG 391 (477)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999 8888888887655555444 33433333322
Q ss_pred --------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCC
Q 047673 123 --------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPE 193 (437)
Q Consensus 123 --------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~e 193 (437)
.+.++.+|.. +++.+..+|++....-....+||++.+.+.+..+ +-|+.+....++.++.+++++++++
T Consensus 392 ~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg--~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 392 LFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG--SQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHhhccc
Confidence 6778899999 9999999999999999999999999999988775 5788888777777777777777664
Q ss_pred C
Q 047673 194 T 194 (437)
Q Consensus 194 s 194 (437)
.
T Consensus 470 ~ 470 (477)
T PF11700_consen 470 E 470 (477)
T ss_pred h
Confidence 3
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.5e-07 Score=80.47 Aligned_cols=139 Identities=13% Similarity=0.051 Sum_probs=107.9
Q ss_pred ccCChhHHH-HHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee-----------cc
Q 047673 57 CKFDSQLLA-AFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL-----------NA 124 (437)
Q Consensus 57 ~~~s~~~~g-~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r-----------~~ 124 (437)
.|++..|+. -+.-+..-.+....++...++|..+.|++++++.+...+...+..+.++...+-+.. +-
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~evay 114 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAEVAY 114 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHH
Confidence 477888765 455566677788889999999999999999999999999999998988887766666 44
Q ss_pred hhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChh
Q 047673 125 PISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPS 196 (437)
Q Consensus 125 ~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~ 196 (437)
.+|+-... +++-.++.+...++.-+|..++.++|-.+.+... .+.+....+......++++..+++|..++
T Consensus 115 ~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~-~sy~~L~~isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 115 YSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGG-VSYFQLNYISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 46666666 6777888988888888898888888887776432 45777777777666667777777887654
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=5e-07 Score=96.70 Aligned_cols=139 Identities=12% Similarity=0.053 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHhh-hccccccccccc
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQ--ILVSQVMIGSV-MATQLVLICVYNAGFT-FLWWPLGWLVPS 337 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 337 (437)
+.......+..++.+++.|+++||+|||+++.....+ .......+... .+.+.+.++.+..+.+ ....|....++.
T Consensus 55 ~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~ 134 (1140)
T PRK06814 55 TLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILP 134 (1140)
T ss_pred HHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhH
Confidence 5666677888899999999999999999976332221 11111122222 2233333333443433 345677777889
Q ss_pred ccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhccccC
Q 047673 338 EIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 338 ~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (437)
+.+|++.|+.++|+.++...++..++|.+.|.+.+..++..+++..++..+.+.++.+.++++
T Consensus 135 ~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 135 DHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred hhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999999999988887666555555555555555555544
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-05 Score=74.02 Aligned_cols=294 Identities=14% Similarity=0.125 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee-----------cchhhhhhcc-ccc
Q 047673 68 TSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL-----------NAPISLRNGT-PKH 135 (437)
Q Consensus 68 ~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r-----------~~~~~i~~~~-~~~ 135 (437)
.++.+..+.+.+++.+.+.|+.|+|+.+.++...+..-.+..-+-+++......- .--.|++|.. ++.
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~t 135 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRET 135 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccceehhhcCChhh
Confidence 7778888899999999999999999999999999998888887766654443333 4456788999 999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhhccCCC-----cchH--------------HHHHhhHHHHHHHHHhhccCCCChh
Q 047673 136 IGGFNIGFQVCVATGILSANLLNYGTQKIKGG-----WGWR--------------ISLAMAVAPASILTIGLLFLPETPS 196 (437)
Q Consensus 136 r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~-----~~wr--------------~~f~~~~i~~~~~~~~~~~l~esp~ 196 (437)
+.+..++..+....+.++|..+-..+...... .+-+ ..+.+...+.++..+...+.|...
T Consensus 136 ie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~- 214 (461)
T KOG3098|consen 136 IERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD- 214 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc-
Confidence 99999999888888888887766554432220 1121 111111122222333334444321
Q ss_pred HHHhhCC---CHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhccccc---ccccccchHHHHHHHHHHH
Q 047673 197 SIIQRNN---DYQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYR---PQLLSESTSLLMSALVTGG 270 (437)
Q Consensus 197 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 270 (437)
...+++. ...+..+..-++..+++........... ..+ ..-|...+..... ....+....+.......++
T Consensus 215 ~~~~~~~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~t-G~~---~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~ 290 (461)
T KOG3098|consen 215 VVNCKSSSETSFSELLKLTFKLLKTPKMLLLFPFFFYT-GLE---TSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGL 290 (461)
T ss_pred hhhhhhhccccHHHHHHHHHHHhcCHhHHHHHHHHHHH-HHH---HHHHHhccchhhhhhhhccCcchhHHHHHHHHHhH
Confidence 1111111 0111111111111111100000000000 000 0001111110000 0000122222556666777
Q ss_pred HHHHHhhhHHHHhhh---cCchhHHHHhHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHhhh-cc
Q 047673 271 IGTVSTILPMILADK---LGRKVLFLLGGIQILVSQVMIGSVMATQ------------------LVLICVYNAGFTF-LW 328 (437)
Q Consensus 271 ~~~~~~~~~g~l~d~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~-~~ 328 (437)
+++++....+.+.+| +|+++.+.++..+..+..++.....+.. +..++.+..+++= .+
T Consensus 291 g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~ 370 (461)
T KOG3098|consen 291 GEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACF 370 (461)
T ss_pred HHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHH
Confidence 788888888888765 6888888888877776666654432211 3333333333332 34
Q ss_pred cccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 047673 329 WPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTV 367 (437)
Q Consensus 329 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~ 367 (437)
....+.++...+ ++.|..+.++.-.-..+.+.++-...
T Consensus 371 ~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~ 408 (461)
T KOG3098|consen 371 NTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFS 408 (461)
T ss_pred HHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhh
Confidence 455566777777 46678888887777666655544333
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.9e-07 Score=84.44 Aligned_cols=114 Identities=11% Similarity=-0.004 Sum_probs=85.9
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhcc-cccc
Q 047673 257 ESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVM---ATQLVLICVYNAGFTFLW-WPLG 332 (437)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~ 332 (437)
..+. +...+...++.+++++..+++.||+|||+.+..+..+.+++.+++.... +........+..+.+.+. .+..
T Consensus 37 ~~~~-g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~ 115 (410)
T TIGR00885 37 AFQA-ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAA 115 (410)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhh
Confidence 4455 8889999999999999999999999999999999999988887764432 122233333333333322 2333
Q ss_pred cccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047673 333 WLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAML 371 (437)
Q Consensus 333 ~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 371 (437)
..+..+..|+++|++..++.+....+|..+++.+.+.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 116 NPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred hHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567889999999999999999999999998888775
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.7e-07 Score=86.84 Aligned_cols=138 Identities=18% Similarity=0.088 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-ccccccccccC
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFLWW-PLGWLVPSEIF 340 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 340 (437)
+++.+...++..++.++.|+++|++|||+.+.++.+...++.++.....+...+.+.-+..+++.+.. .+...+.+|..
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEia 171 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIA 171 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcC
Confidence 68889999999999999999999999999999999999999999999887665555555556555443 34567889999
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHHHHhhhccccC
Q 047673 341 PLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHF--KAGVFFFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 341 p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (437)
|++.||...+.......+|..++ ++.+...++. +|...+....+..+...+..++.||+
T Consensus 172 p~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pes 232 (513)
T KOG0254|consen 172 PAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPES 232 (513)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999998888877655554 6677766654 56655555444444444446666764
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.7e-07 Score=96.50 Aligned_cols=112 Identities=11% Similarity=-0.010 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhh-ccccccccccc
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVM---ATQLVLICVYNAGFTF-LWWPLGWLVPS 337 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 337 (437)
++..++..+..++++++.|+++||+|||++++.+.++.++..++..... ....+.+..+..+.+. ...+....++.
T Consensus 50 ~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 129 (1146)
T PRK08633 50 AIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIP 129 (1146)
T ss_pred HHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhH
Confidence 6677778888899999999999999999999888766555554433322 2223333333333333 34455567789
Q ss_pred ccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047673 338 EIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYH 373 (437)
Q Consensus 338 ~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 373 (437)
|.+|++.|++++|+......+|..+++.+.+.+.+.
T Consensus 130 ~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 130 ELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999888775
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.8e-07 Score=87.64 Aligned_cols=114 Identities=15% Similarity=0.042 Sum_probs=78.7
Q ss_pred HHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhhc-ccccccccccccC
Q 047673 270 GIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQL--------VLICVYNAGFTFL-WWPLGWLVPSEIF 340 (437)
Q Consensus 270 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~ 340 (437)
+...++.++.|++.||+|||+.+..+..+..++.++..+..+... ..+.-+..+.+.+ ..+....+.+|.+
T Consensus 67 l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~ 146 (434)
T PRK15075 67 LMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIA 146 (434)
T ss_pred HHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhC
Confidence 334578899999999999999999999998888888776654321 1222233333332 2333456788999
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HhcccchhhHHH
Q 047673 341 PLEIRSAGKSITVAVGLLFTSLVAQTVLAML--------YHFKAGVFFFFG 383 (437)
Q Consensus 341 p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~ 383 (437)
|+++|+++.++.....+++..+++.+.+.+. +..+|...+.+.
T Consensus 147 p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~ 197 (434)
T PRK15075 147 TPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIG 197 (434)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHH
Confidence 9999999999988888777766666555442 455666554443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-06 Score=82.68 Aligned_cols=105 Identities=19% Similarity=0.098 Sum_probs=80.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhcc-ccceeeeee------------cchh
Q 047673 60 DSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAAL-DIYMLILGL------------NAPI 126 (437)
Q Consensus 60 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~-~~~~l~~~r------------~~~~ 126 (437)
+..+.+++.+...++..++.+++++++||+|+|+++..+.++.+++.++..+.+ +.+.+++.. ...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888999999999999999999999999999988888877776653 433333322 3344
Q ss_pred hhhhcc--------cccccchHHHHHHHHHHHHHHHHHHHhhhhcc
Q 047673 127 SLRNGT--------PKHIGGFNIGFQVCVATGILSANLLNYGTQKI 164 (437)
Q Consensus 127 ~i~~~~--------~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~ 164 (437)
+++|.. ++++|.+.++.+....+|..+++.+.+.+.+.
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI 380 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455543 34578999999999999999999998887654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.8e-07 Score=84.06 Aligned_cols=137 Identities=15% Similarity=0.117 Sum_probs=114.2
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccc---ccee--eeee-------c
Q 047673 56 YCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALD---IYML--ILGL-------N 123 (437)
Q Consensus 56 ~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~---~~~l--~~~r-------~ 123 (437)
++|++..++.++.-...+..++|++++|++.||+|.|+++.++.+++.+.++...+... ++.+ +++- .
T Consensus 282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~ 361 (438)
T COG2270 282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQAS 361 (438)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHH
Confidence 45999999999999999999999999999999999999999999999988887766532 3322 1111 7
Q ss_pred chhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCC
Q 047673 124 APISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPET 194 (437)
Q Consensus 124 ~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~es 194 (437)
+.+|.++.. +++-++.+|++....-.++.+||.+-+.+.+..+ +-|.-+....++..+.++.++.+|+.
T Consensus 362 SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg--~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 362 SRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG--SSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc--chhhHHHHHHHHHHhhHhhEEeecCC
Confidence 889999999 9999999999999999999999999999888775 57777777677777777777777754
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.4e-07 Score=82.02 Aligned_cols=117 Identities=16% Similarity=0.007 Sum_probs=83.2
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFLW-WPLGWL 334 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 334 (437)
+..+. +...+...++..++.++.|+++||+|||+.+..+.++..++.+.. ...+...+.+..+..+++.+. .+....
T Consensus 33 s~~~~-g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~ 110 (355)
T TIGR00896 33 SFSVA-GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPS 110 (355)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchH
Confidence 44556 888999999999999999999999999999998887777666554 332222222222333333222 223334
Q ss_pred cccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047673 335 VPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFK 375 (437)
Q Consensus 335 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 375 (437)
.+.|.+| ++|+++.++.+....+|..+++.+.+.+.+..+
T Consensus 111 ~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~ 150 (355)
T TIGR00896 111 LIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG 150 (355)
T ss_pred HHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5567776 579999999999999999999988888876653
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.9e-07 Score=85.41 Aligned_cols=124 Identities=10% Similarity=-0.011 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhh-cCchhHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhc-ccccccccccc
Q 047673 262 LMSALVTGGIGTVSTILPMILADK-LGRKVLFLLGGIQILVSQVMIGSVMAT-QLVLICVYNAGFTFL-WWPLGWLVPSE 338 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~ 338 (437)
...............+++|+++|| +|||+.+..+.++..++..++...... ....+.....+.+.+ ..+....+..|
T Consensus 60 ~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~ 139 (500)
T PRK09584 60 ITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLST 139 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHH
Confidence 444444444444555789999999 599999999999988887777654322 222222223333333 33444566789
Q ss_pred cCChhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHH
Q 047673 339 IFPLEI--RSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGW 385 (437)
Q Consensus 339 ~~p~~~--r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 385 (437)
.+|++. |..+.++.+...++|..++|.+.+.+.++.||...+...++
T Consensus 140 ~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i 188 (500)
T PRK09584 140 CYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVV 188 (500)
T ss_pred hcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 887643 45678888999999999999999999998887655444443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.3e-07 Score=82.47 Aligned_cols=125 Identities=19% Similarity=0.084 Sum_probs=80.2
Q ss_pred hhhHHHHhhhc-----CchhH-HHHhHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHhhhcccccccccccccCChhhh
Q 047673 276 TILPMILADKL-----GRKVL-FLLGGIQILVSQVMIGSVMA---TQLVLICV-YNAGFTFLWWPLGWLVPSEIFPLEIR 345 (437)
Q Consensus 276 ~~~~g~l~d~~-----g~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~r 345 (437)
.++.|+++||+ ||||. +..+.+..++....+.+... ...+.... ..........+....++.|.+|+++|
T Consensus 38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r 117 (356)
T TIGR00901 38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL 117 (356)
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence 88999999997 78886 45556666665555544321 11111111 11122222344455677899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cchhhHHHHHHHHHHHHhhh-ccccC
Q 047673 346 SAGKSITVAVGLLFTSLVAQTVLAMLYHFK--------AGVFFFFGGWLIAMTTFVHF-FLPET 400 (437)
Q Consensus 346 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~-~~~~~ 400 (437)
+.+.++......+|..+++.+.+.+.+..+ |...+...++..+...+..+ ..+|+
T Consensus 118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 118 GYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999988887777 66555555444444444333 34554
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.7e-10 Score=105.48 Aligned_cols=139 Identities=20% Similarity=0.241 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhc-cccccccccc
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVM---ATQLVLICVYNAGFTFL-WWPLGWLVPS 337 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 337 (437)
........++..+|+++.|+++||+|||+.+..+..+..++.++..+.. +...+.+.-+..|++.+ ..+....++.
T Consensus 49 ~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~ 128 (451)
T PF00083_consen 49 SLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYIS 128 (451)
T ss_pred HHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6778888899999999999999999999999999999999998888887 44444444444555543 3445677889
Q ss_pred ccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---hcccchhhHHHHHHHHHHHHhhhccccC
Q 047673 338 EIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLY---HFKAGVFFFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 338 ~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (437)
|..|++.|+...++.+....+|..++..+.....+ ...|.....+..+..+...+...++||+
T Consensus 129 E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES 194 (451)
T PF00083_consen 129 EIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES 194 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999888887776665555443322222 1235555555555554555555677775
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.1e-07 Score=84.43 Aligned_cols=137 Identities=17% Similarity=0.074 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhc-----Cchh-HHHHhHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHhhhccccc
Q 047673 262 LMSALVTGGIGTVSTILPMILADKL-----GRKV-LFLLGGIQILVSQVMIGSVMA---TQLVLIC-VYNAGFTFLWWPL 331 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~ 331 (437)
+.+...... .+..++.|+++||+ |||| .+..+.+..+++...+..... ...+..+ .....+.....+.
T Consensus 37 g~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 114 (402)
T PRK11902 37 GFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIV 114 (402)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 444443333 68889999999999 7765 677777777777766655422 1122222 1222222334455
Q ss_pred ccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccchhhHHHHHHHHHHHHhhhccccC
Q 047673 332 GWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHF-KAGVFFFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 332 ~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (437)
...++.|..|+++|+++.++......++..+++.+.+.+.+.. +|...+.+.++..+...+..+..+|+
T Consensus 115 ~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~ 184 (402)
T PRK11902 115 FDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEP 184 (402)
T ss_pred HHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5677789999999999999999888899999999888888754 66654444333333333334455554
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.1e-07 Score=85.41 Aligned_cols=125 Identities=14% Similarity=0.162 Sum_probs=81.2
Q ss_pred HHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhhc-ccccccccccccCChhhhh
Q 047673 274 VSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVM------ATQLVLICVYNAGFTFL-WWPLGWLVPSEIFPLEIRS 346 (437)
Q Consensus 274 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~r~ 346 (437)
...++.|++.||+|+|+++.++.++..++.++.+... +...+.+.....+.+.+ ..+.....+.+.+| +.||
T Consensus 76 ~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG 154 (591)
T PTZ00207 76 YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRG 154 (591)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhH
Confidence 4566789999999999999999999999998888752 22222222223333322 22223344567787 6799
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhcccc
Q 047673 347 AGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPE 399 (437)
Q Consensus 347 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 399 (437)
++.|+......+|+.+.+++...+........+++.+++..+.+++...+++.
T Consensus 155 ~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~ 207 (591)
T PTZ00207 155 AVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRL 207 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeC
Confidence 99999999999999876666665554222234555555555555555555543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.1e-07 Score=89.28 Aligned_cols=117 Identities=14% Similarity=0.024 Sum_probs=90.2
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHH------------------------
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMA------------------------ 311 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 311 (437)
+..+. +.+.+...++..++.++.+++.||.+||+++.++.++++++.+++.....
T Consensus 66 ss~~~-G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~ 144 (633)
T TIGR00805 66 STSSS-GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFL 144 (633)
T ss_pred CCCcc-eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccccccc
Confidence 34445 77888888999999999999999999999999999999999888765430
Q ss_pred ------------------------H-H--HHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHHHHHHH
Q 047673 312 ------------------------T-Q--LVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLV 363 (437)
Q Consensus 312 ------------------------~-~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~ 363 (437)
. . .+.+.-+..+.+. ...++...++.|.+|++.|+...|+.+....+|..++
T Consensus 145 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG 224 (633)
T TIGR00805 145 CMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFG 224 (633)
T ss_pred ccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHH
Confidence 0 1 1222333333333 3345567888999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 047673 364 AQTVLAMLYH 373 (437)
Q Consensus 364 ~~~~~~~~~~ 373 (437)
+.+.+.+.+.
T Consensus 225 ~llgg~l~~~ 234 (633)
T TIGR00805 225 YLLGSFCLQI 234 (633)
T ss_pred HHHHHHHHhc
Confidence 9888887754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=73.65 Aligned_cols=134 Identities=11% Similarity=-0.011 Sum_probs=93.7
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHH-HHHHHHHHhhc--ccccee-eeee-------cchh
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTT-FLTSSAIGGAA--LDIYML-ILGL-------NAPI 126 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~-~~~~~~~~~~a--~~~~~l-~~~r-------~~~~ 126 (437)
|+|+...+.+.+....-.+..+++.|.++||+|++-..+.+..+ ..++-....++ +.|..+ +.+- ..-.
T Consensus 296 GlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsysllAcslWP 375 (459)
T KOG4686|consen 296 GLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFLGLSYSLLACSLWP 375 (459)
T ss_pred CCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhhHHHHHHHHhh
Confidence 89999999999999999999999999999999999877665444 44444444333 111111 1111 1123
Q ss_pred hhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHh-hHHHHHHHHHhhccC
Q 047673 127 SLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAM-AVAPASILTIGLLFL 191 (437)
Q Consensus 127 ~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~-~~i~~~~~~~~~~~l 191 (437)
.++... +++.|.+.+..+.-.++|..+.+++++++.+..+.+.|--.|.+ .+.+++....+.+.+
T Consensus 376 ~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 376 CVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred hhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 345556 67889999999999999999999999999887665566655544 445555544444444
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-06 Score=84.47 Aligned_cols=120 Identities=17% Similarity=0.092 Sum_probs=83.2
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q 047673 257 ESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFLWWPLGWLVP 336 (437)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (437)
.+.. .++.....+...++.++.|+++|.+|||..++.+.++..++.++.....+...........+.+.+...+....+
T Consensus 77 ~~~~-~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~i 155 (599)
T PF06609_consen 77 SDNW-SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAI 155 (599)
T ss_pred Cccc-hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444 677778888999999999999999999999999999999999988877666533333333333444444445557
Q ss_pred cccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 047673 337 SEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAG 377 (437)
Q Consensus 337 ~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 377 (437)
+|..|.+.|..+.++.....-.....++.+...+..+.+|.
T Consensus 156 sEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WR 196 (599)
T PF06609_consen 156 SELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWR 196 (599)
T ss_pred HHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcc
Confidence 89999999988777665443333334455544444444554
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.9e-06 Score=78.63 Aligned_cols=144 Identities=12% Similarity=0.032 Sum_probs=88.5
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhh----hcCchhHHHHh-HHHHHHHHHHHHHHHHHH-----------------H
Q 047673 257 ESTSLLMSALVTGGIGTVSTILPMILAD----KLGRKVLFLLG-GIQILVSQVMIGSVMATQ-----------------L 314 (437)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------~ 314 (437)
.... +....+..+..++..++.|+++| |+|||+.++.+ .+...+++.++.+..+.. .
T Consensus 38 ~~~~-~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~ 116 (477)
T TIGR01301 38 HAWA-SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIV 116 (477)
T ss_pred HHHH-HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHH
Confidence 3445 78888889999999999999999 59999988765 555555555555432210 1
Q ss_pred HHHHHHHHHhhh-cccccccccccccCChhhh--hhHHHHHHHHHHHHHHHHHHHHHHH--HHhc-------------cc
Q 047673 315 VLICVYNAGFTF-LWWPLGWLVPSEIFPLEIR--SAGKSITVAVGLLFTSLVAQTVLAM--LYHF-------------KA 376 (437)
Q Consensus 315 ~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r--~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~-------------g~ 376 (437)
..+.+...-++. ...+...++++|..|+++| +.+.++.+....+|+.+++.+.+.. .+.. +.
T Consensus 117 ~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 196 (477)
T TIGR01301 117 FVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANL 196 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchH
Confidence 111111111111 1222335678999998865 5788888888899888888776653 1211 11
Q ss_pred -chhhHHHHHHHHHHHHhhhccccCC
Q 047673 377 -GVFFFFGGWLIAMTTFVHFFLPETK 401 (437)
Q Consensus 377 -~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (437)
..|.+.+++..+...+..+..+|..
T Consensus 197 ~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 197 KSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 2344444444555556666677754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.4e-06 Score=78.82 Aligned_cols=138 Identities=14% Similarity=0.207 Sum_probs=101.4
Q ss_pred chHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHhhhcccccccc
Q 047673 258 STSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ-LVLIC--VYNAGFTFLWWPLGWL 334 (437)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~ 334 (437)
.+. .++.++......+..++.+.+.||+|.|.+.+.+.++..+++++..+..+.+ +.... +.+.++++.+.|.. .
T Consensus 81 ~~~-~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~pai-v 158 (509)
T KOG2504|consen 81 SQI-AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAV-V 158 (509)
T ss_pred cHH-HHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchh-h
Confidence 334 7888888888999999999999999999999999999999999998888765 33333 33333333444442 2
Q ss_pred cccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHHhhhccc
Q 047673 335 VPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAG-VFFFFGGWLIAMTTFVHFFLP 398 (437)
Q Consensus 335 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~ 398 (437)
.+. .+-+++|+.+.|+......+|..+.|++...+.+..||. ..++++.+.+-.+.......|
T Consensus 159 iv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 159 ILG-TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred hhh-hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333 455678999999999999999999999999999999965 455555544433333333333
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.1e-08 Score=88.00 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=85.2
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhh----hhchhHHHH-HHHHHHHHHHHHHhhccccceeeeee----------
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTR----AFGRKASIL-VGGTTFLTSSAIGGAALDIYMLILGL---------- 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d----r~Grr~~~~-~~~~~~~~~~~~~~~a~~~~~l~~~r---------- 122 (437)
|++..+.+.+--+..+...+.+|+.|..+| ||||||.++ .+.+...++.++..++.++..++.-.
T Consensus 63 Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai 142 (498)
T KOG0637|consen 63 GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAI 142 (498)
T ss_pred CCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHH
Confidence 788888898888888999999999999999 589887655 56677778888888888776665544
Q ss_pred -------------------cchhhhhhcc-cccccc-hHHHHHHHHHHHHHHHHHHHhh
Q 047673 123 -------------------NAPISLRNGT-PKHIGG-FNIGFQVCVATGILSANLLNYG 160 (437)
Q Consensus 123 -------------------~~~~~i~~~~-~~~r~~-~~~~~~~~~~~G~~~~~~~~~~ 160 (437)
.+.+++.|.. ++++.+ +++++..+.++|..+|..++..
T Consensus 143 ~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 143 VLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred HHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc
Confidence 6678899999 666666 9999999999999999988864
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.2e-06 Score=77.50 Aligned_cols=115 Identities=10% Similarity=-0.051 Sum_probs=83.1
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhc-cccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGS---VMATQLVLICVYNAGFTFL-WWPL 331 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~ 331 (437)
+..+. +...+...++..++.++.|++.||+|||+++..+..+.+++.+++.. ..+........+..+.+.+ ..+.
T Consensus 59 s~~~~-gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~ 137 (438)
T PRK10133 59 TNFQA-GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETA 137 (438)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 45566 88889999999999999999999999999999999999988876532 2222233344444444432 2333
Q ss_pred ccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047673 332 GWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAML 371 (437)
Q Consensus 332 ~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 371 (437)
...++.|..|++.|...+++.+....+|..+++.+.+.+.
T Consensus 138 ~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 138 ANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777767788989988898888887766543
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.6e-06 Score=78.33 Aligned_cols=137 Identities=12% Similarity=-0.069 Sum_probs=104.2
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhc----------cccceeeeee---
Q 047673 56 YCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAA----------LDIYMLILGL--- 122 (437)
Q Consensus 56 ~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a----------~~~~~l~~~r--- 122 (437)
++|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+..... ++. .++.+-
T Consensus 282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~-~~~~~~~~l 360 (468)
T TIGR00788 282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDE-VFVLGDSII 360 (468)
T ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCe-eeeeehhHH
Confidence 468999999999999999999999999999999999999999999999988665422 222 122221
Q ss_pred ----------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCC----CcchHHHHH-hhHHHHHHHHH
Q 047673 123 ----------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKG----GWGWRISLA-MAVAPASILTI 186 (437)
Q Consensus 123 ----------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~----~~~wr~~f~-~~~i~~~~~~~ 186 (437)
....++.+.. ++++|...++.+...++|..+++.+++.+.+..+ +++.++..+ +..+..++.+.
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~ 440 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP 440 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence 5577888999 9999999999999999999999999998877543 123333332 24444555555
Q ss_pred hhccCCC
Q 047673 187 GLLFLPE 193 (437)
Q Consensus 187 ~~~~l~e 193 (437)
..+++|+
T Consensus 441 ~~~llP~ 447 (468)
T TIGR00788 441 LLHLLPR 447 (468)
T ss_pred HHHhCCC
Confidence 5557785
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.4e-06 Score=80.25 Aligned_cols=142 Identities=13% Similarity=0.100 Sum_probs=105.5
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhc-CchhHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhh-ccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKL-GRKVLFLLGGIQILVSQVMIGSVM--ATQLVLICVYNAGFTF-LWWPL 331 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~ 331 (437)
+..++ ..+...+....-+..+++||++||+ |+|+.+..+.++++++.+++.... ....+.+.+..+..+. ..-+.
T Consensus 59 ~~~~A-~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~N 137 (498)
T COG3104 59 DETHA-TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPN 137 (498)
T ss_pred ChHhh-HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccccc
Confidence 56666 6666666777778889999999995 999999999999999999998874 2222222222222333 33344
Q ss_pred ccccccccCChh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhccc
Q 047673 332 GWLVPSEIFPLE--IRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLP 398 (437)
Q Consensus 332 ~~~~~~~~~p~~--~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 398 (437)
..++..|++|++ .|..++++.++..++|+.+.|.+.+.+.++.+|..-+..+.+....+++.+...+
T Consensus 138 iS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 138 ISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred HHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 566778988753 3778888889999999999999999999999987777777767777776666554
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.5e-06 Score=77.28 Aligned_cols=133 Identities=14% Similarity=0.066 Sum_probs=106.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchh
Q 047673 59 FDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPI 126 (437)
Q Consensus 59 ~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~ 126 (437)
.+....|.+.++..+.-++.-.+..++.+|+|.|+.++++..++.+=.+++++++|.+.+.+.+ ...-
T Consensus 256 ~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk 335 (412)
T PF01306_consen 256 QGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK 335 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999998888 6677
Q ss_pred hhhhcc-cccccchHHHH-HHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHH-hhccCCCC
Q 047673 127 SLRNGT-PKHIGGFNIGF-QVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTI-GLLFLPET 194 (437)
Q Consensus 127 ~i~~~~-~~~r~~~~~~~-~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~-~~~~l~es 194 (437)
|+++.+ ++-.++...+. +.+.++|..+.+.+++.+.+.. |.+..|++.+.+.+...+ ..+.+++.
T Consensus 336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~---G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 336 YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI---GFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc---CcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 888988 66666666664 6888999999999999988654 788888876655554444 44445443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.1e-05 Score=72.85 Aligned_cols=119 Identities=13% Similarity=0.047 Sum_probs=86.4
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeee----e-------cch
Q 047673 57 CKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILG----L-------NAP 125 (437)
Q Consensus 57 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~----r-------~~~ 125 (437)
+|+++.+.++..+.+..+..+|.+..+++.||+|+||.+.++..+..++.++....++...+... - ...
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~ 252 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIF 252 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999988888888877666555433211111 1 223
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHH
Q 047673 126 ISLRNGTPKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVA 179 (437)
Q Consensus 126 ~~i~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i 179 (437)
+...+..+++.+.+.++. ....+|.++.|.+.+.+.+.. |.+..|++..+
T Consensus 253 s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~---g~~~a~~v~~~ 302 (310)
T TIGR01272 253 SLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCL---GIQLAFALPVP 302 (310)
T ss_pred HHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhc---cchHHHHHHHH
Confidence 333444455566777775 456689999999888887644 67777775443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.1e-05 Score=63.54 Aligned_cols=283 Identities=13% Similarity=0.080 Sum_probs=142.7
Q ss_pred CcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee----cchhh---
Q 047673 55 NYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL----NAPIS--- 127 (437)
Q Consensus 55 ~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r----~~~~~--- 127 (437)
++++....++|.+.-..+-...+...+.|-++||-|||+.-+.-++.++++++ .-.+++|-.++++| .+.++
T Consensus 65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFS 143 (454)
T KOG4332|consen 65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFS 143 (454)
T ss_pred hhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHH
Confidence 35678889999988888878888889999999999999976655555555433 44679999999999 22222
Q ss_pred ------hhhcccccccchHHHHH--------HHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHH-HhhccCC
Q 047673 128 ------LRNGTPKHIGGFNIGFQ--------VCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILT-IGLLFLP 192 (437)
Q Consensus 128 ------i~~~~~~~r~~~~~~~~--------~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~-~~~~~l~ 192 (437)
++|.- ++|+.-.-+.. .+..+=.+++.+.+..+.+..+ .|--.+|-..+-+..++. +...-.-
T Consensus 144 aFEsWliaEHn-ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~s-lGPVAPFdAAacfLaigmAvil~~W~ 221 (454)
T KOG4332|consen 144 AFESWLIAEHN-EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFS-LGPVAPFDAAACFLAIGMAVILSSWS 221 (454)
T ss_pred HHHHHHHHHhh-hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhc-cCCCCchHHHHHHHHHHHHHHHhhhh
Confidence 22222 23443222221 2223333444444444443322 233345554443222222 2221122
Q ss_pred CChhHHHhhCCCHHHHHHHHHHHhCCc-----cHH-HHHHHHHHHhhhhhccccchhhhhcccccccccccchHHHHHHH
Q 047673 193 ETPSSIIQRNNDYQKAEKIMQIVRGTA-----DVQ-AELDDLIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSAL 266 (437)
Q Consensus 193 esp~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (437)
| .-++ ..+.++.+.+.+... +.+ ..+..++.. -+.....+.-+|.+...+. +.+...+.+..
T Consensus 222 E------Nygd-ps~~kdlltqf~gaa~aiaSD~ki~LLG~iqsL---FE~smytFVFLWTPaLspn--~e~iPhGfiFa 289 (454)
T KOG4332|consen 222 E------NYGD-PSENKDLLTQFKGAARAIASDEKIALLGAIQSL---FEGSMYTFVFLWTPALSPN--DEEIPHGFIFA 289 (454)
T ss_pred h------ccCC-hhhhHHHHHHhhHhHHHHhcchHHHHHHHHHHH---HhhhhheeeeeecccCCCC--cccCCchhHHH
Confidence 2 1222 223333333322211 000 001111100 0000111111111111000 22222367777
Q ss_pred HHHHHHHHHhhhHHHHhhhcCch--hHHHHhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhhccccccccc
Q 047673 267 VTGGIGTVSTILPMILADKLGRK--VLFLLGGIQILVSQVMIGSVMAT---------QLVLICVYNAGFTFLWWPLGWLV 335 (437)
Q Consensus 267 ~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 335 (437)
.+.+..++|+-+..++..|-..| ..+.+.+.+..+.+.+....... ..+..+++-...+..+.++. -+
T Consensus 290 tFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSim-km 368 (454)
T KOG4332|consen 290 TFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIM-KM 368 (454)
T ss_pred HHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHH-HH
Confidence 77788888888887777664433 45555555555554444333311 15566666666665555554 34
Q ss_pred ccccCChhhhhhHHHHHH
Q 047673 336 PSEIFPLEIRSAGKSITV 353 (437)
Q Consensus 336 ~~~~~p~~~r~~~~g~~~ 353 (437)
-.+..|++.|++.+-...
T Consensus 369 RsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 369 RSQYIPEEARSTIMNFFR 386 (454)
T ss_pred HHhhCCHHHHhhhhhhee
Confidence 468889998887655433
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.4e-06 Score=58.19 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=57.6
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhcccccee
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYML 118 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l 118 (437)
++|.++.|++.+..++|+.+|++...++.++..+++.+..+.+...+..+.+++.++++.+
T Consensus 23 ~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 23 GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 8999999999999999999999999999999899999999999999999999999887654
|
Note that many members are hypothetical proteins. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.5e-05 Score=74.71 Aligned_cols=106 Identities=8% Similarity=-0.065 Sum_probs=76.9
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhcc--ccceeeeee------------c
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAAL--DIYMLILGL------------N 123 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~--~~~~l~~~r------------~ 123 (437)
|.++...++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+ +++.+++.. .
T Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~ 339 (448)
T PRK09848 260 NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTV 339 (448)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555677888999999999999999999999999888887776654 344333222 3
Q ss_pred chhhhhhcc-c-------ccccchHHHHHHHHHHHHHHHHHHHhhhhc
Q 047673 124 APISLRNGT-P-------KHIGGFNIGFQVCVATGILSANLLNYGTQK 163 (437)
Q Consensus 124 ~~~~i~~~~-~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~ 163 (437)
..++.+|.. . +++|...+.++....+|..+++.+.+.+..
T Consensus 340 ~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 340 MWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred HHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554 3 245888999999999999999988877654
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.6e-06 Score=73.04 Aligned_cols=121 Identities=21% Similarity=0.242 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccc--cceeeeee------------cchhh
Q 047673 62 QLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALD--IYMLILGL------------NAPIS 127 (437)
Q Consensus 62 ~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~--~~~l~~~r------------~~~~~ 127 (437)
.+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.++.++..+ .+.+++.| ...++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 57899999999999999999999999999998888888776666777777766 67777777 55677
Q ss_pred hhhcc-c-ccccchHHHHHH-HHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHH
Q 047673 128 LRNGT-P-KHIGGFNIGFQV-CVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASI 183 (437)
Q Consensus 128 i~~~~-~-~~r~~~~~~~~~-~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~ 183 (437)
+.|+. + ++|+...+.... ...+|..+++.+++.+... ...+||..|.+.......
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHH
Confidence 78888 5 578888888888 5888989998887776655 445899977766655443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0033 Score=59.44 Aligned_cols=104 Identities=10% Similarity=-0.002 Sum_probs=79.5
Q ss_pred ChhHHHHHHHHHHHHHHHH-HHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhc----cccc------------------
Q 047673 60 DSQLLAAFTSSLYIAGLIA-SLFASTVTRAFGRKASILVGGTTFLTSSAIGGAA----LDIY------------------ 116 (437)
Q Consensus 60 s~~~~g~~~s~~~l~~~i~-~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a----~~~~------------------ 116 (437)
..+.+.++-+...+..++. .++.+++++|++|++++-+....+....+++++. ++..
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 4468999999888887777 8999999999999999988777777666666554 1110
Q ss_pred -eeeeee---------------------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhc
Q 047673 117 -MLILGL---------------------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQK 163 (437)
Q Consensus 117 -~l~~~r---------------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~ 163 (437)
.+...| .--.+.+|.+ +++-.|..++...+.++|.++++.+...+.+
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111 2235678999 9999999999999999999999988887763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.5e-06 Score=77.34 Aligned_cols=104 Identities=16% Similarity=0.086 Sum_probs=76.1
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhh-c
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ-------LVLICVYNAGFTF-L 327 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~ 327 (437)
+.... +.+.....++.++|.++.|++.||+|||+++...++++.++.++........ .+...-+..+++. +
T Consensus 82 ps~i~-~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGG 160 (538)
T KOG0252|consen 82 PSGVL-ALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGG 160 (538)
T ss_pred CchHH-HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccC
Confidence 34444 6788888899999999999999999999999999999988887555433222 2333334444444 3
Q ss_pred ccccccccccccCChhhhhhHHHHHHHHHHHHH
Q 047673 328 WWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFT 360 (437)
Q Consensus 328 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~ 360 (437)
-.|+..+..+|....+.||+-.+...+++..|.
T Consensus 161 DYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi 193 (538)
T KOG0252|consen 161 DYPLSATIMSESANKKTRGAFIAAVFAMQGFGI 193 (538)
T ss_pred CCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence 467878888999999999988887666554443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00089 Score=62.44 Aligned_cols=107 Identities=14% Similarity=-0.029 Sum_probs=67.8
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHH----HH---HHHHHH---HHHHHHhh
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSV----MA---TQLVLI---CVYNAGFT 325 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~---~~~~~~~~ 325 (437)
+.... +..-....+.++.++++..++.+|+|..+.-..+......++.+.... .. ...... .+...=.+
T Consensus 291 s~~~i-gi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~G 369 (432)
T PF06963_consen 291 SPSVI-GIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIG 369 (432)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHH
Confidence 44444 677778888999999999999999999887777766554444332221 11 111111 11111112
Q ss_pred h-cccccccccccccCChhhhhhHHHHHHHHHHHHHHHH
Q 047673 326 F-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLV 363 (437)
Q Consensus 326 ~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~ 363 (437)
. ++-....-+..|..|+++|++..|.-+...++...+.
T Consensus 370 LW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~ 408 (432)
T PF06963_consen 370 LWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLS 408 (432)
T ss_pred HHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence 1 2333334456899999999999999998888866543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.7e-05 Score=73.34 Aligned_cols=138 Identities=18% Similarity=0.119 Sum_probs=99.2
Q ss_pred HHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCChhhhh
Q 047673 267 VTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFLWWPLGWLVPSEIFPLEIRS 346 (437)
Q Consensus 267 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~ 346 (437)
..++..++.++..|.++||+|||..+........+..+...+.... ... .....+..........+++++....+.|.
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~~-~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~ 147 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGYW-FFL-LLGLSGGFSAIFSVGFAYVADISSEEERS 147 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHH-Hhh-hcccccchhhhhhhhhhheeeccchhHHH
Confidence 4567788999999999999999999988888877777666665421 111 11111222233445567889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHHhhhccccCCCCCHH
Q 047673 347 AGKSITVAVGLLFTSLVAQTVLAMLYHFKAG-VFFFFGGWLIAMTTFVHFFLPETKNVPIE 406 (437)
Q Consensus 347 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (437)
...|+.+..-..+..++|.+.+.+....+.. .+.+..+...+..+...+++||+..++.+
T Consensus 148 ~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 148 SSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 9999999988999999999999998887754 44445555555556666778877655443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=3e-05 Score=73.58 Aligned_cols=145 Identities=14% Similarity=0.063 Sum_probs=102.0
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccccccccc
Q 047673 257 ESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ-LVLICVYNAGFTFLWWPLGWLV 335 (437)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 335 (437)
.++- +...+++.++.+++.+.++.+.||++..+.+....++..+..++-....+.+ .+.+-++.+.+-.+..|....+
T Consensus 80 ~~~l-~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~ 158 (495)
T KOG2533|consen 80 GNQL-GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAI 158 (495)
T ss_pred hhhh-hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHH
Confidence 3444 7888899999999999999999999976666655555544443333333333 3333333333334445555666
Q ss_pred ccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------hcccc-hhhHHHHHHHHHHHHhhhccccCCC
Q 047673 336 PSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLY------HFKAG-VFFFFGGWLIAMTTFVHFFLPETKN 402 (437)
Q Consensus 336 ~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (437)
++..|.++.|+.-+|+.+....+|+++++.+...+.. ..||. .|.+-+++.++.++++++++|+...
T Consensus 159 lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 159 LGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred HHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 7899999999999999999999999999888777543 23454 6667777777788888888886544
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.7e-05 Score=69.19 Aligned_cols=135 Identities=10% Similarity=0.078 Sum_probs=103.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhc-cccceee----e---ee--------
Q 047673 59 FDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAA-LDIYMLI----L---GL-------- 122 (437)
Q Consensus 59 ~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a-~~~~~l~----~---~r-------- 122 (437)
.+....+.+.++..++-...-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+... + ..
T Consensus 240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~ 319 (400)
T PF03825_consen 240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH 319 (400)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence 567778888888888889999999999999999999999999999999888887 4433221 1 12
Q ss_pred -cchhhhhhcc-cccccchHHHHHH-HHHHHHHHHHHHHhhhhccCCC---cchHHHHHhhHHHHHHHHHh-hccCCC
Q 047673 123 -NAPISLRNGT-PKHIGGFNIGFQV-CVATGILSANLLNYGTQKIKGG---WGWRISLAMAVAPASILTIG-LLFLPE 193 (437)
Q Consensus 123 -~~~~~i~~~~-~~~r~~~~~~~~~-~~~~G~~~~~~~~~~l~~~~~~---~~wr~~f~~~~i~~~~~~~~-~~~l~e 193 (437)
.+..|+.+.. ++.|+++.+++.. ..++|..+|..++|.+.+..+. ..|...+.+.+...++..+. .++.+|
T Consensus 320 ~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 320 AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 6778899999 8999999999875 5789999999999999875541 34666666666555554443 333443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0001 Score=66.24 Aligned_cols=116 Identities=12% Similarity=0.002 Sum_probs=92.4
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhcc-ccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ---LVLICVYNAGFTFLW-WPL 331 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~ 331 (437)
+..++ +.+......+..+.++..+++.+|+|+|+-++.++.+++++..++....... .....++..+.+.+. -..
T Consensus 46 s~~~a-~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~Leta 124 (422)
T COG0738 46 TYFEA-SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETA 124 (422)
T ss_pred cHHHH-HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhc
Confidence 34566 7888888999999999999999999999999999999999999887544433 444444555555443 233
Q ss_pred ccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047673 332 GWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLY 372 (437)
Q Consensus 332 ~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 372 (437)
...++..+.|++..+.-+.+...++.+|+.++|.+.+.+..
T Consensus 125 aNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 125 ANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred cchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45667788888888888999999999999999999998877
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.5e-05 Score=73.39 Aligned_cols=104 Identities=11% Similarity=0.010 Sum_probs=74.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhh-----ccccceeeeee------------
Q 047673 60 DSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGA-----ALDIYMLILGL------------ 122 (437)
Q Consensus 60 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----a~~~~~l~~~r------------ 122 (437)
+....+++.++..++..++.+++++++||+|+|+.+.++..+..++.+...+ ..+.+.+++.-
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777899999999999999999999999888777766655432 23333332222
Q ss_pred cchhhhhhcc--------cccccchHHHHHHHHHHHHHHHHHHHhhhhc
Q 047673 123 NAPISLRNGT--------PKHIGGFNIGFQVCVATGILSANLLNYGTQK 163 (437)
Q Consensus 123 ~~~~~i~~~~--------~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~ 163 (437)
...++++|.. .++.|...+......-+|..+++.+.+.+.+
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667663 2334558888888889999999888877654
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.4e-05 Score=52.83 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=41.5
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHH
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTF 102 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~ 102 (437)
|+++.|+|.+.++..+...++.+++|.++||+|+++.++....++
T Consensus 31 Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 31 GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 899999999999999999999999999999999999888766554
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00017 Score=63.94 Aligned_cols=159 Identities=14% Similarity=0.049 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHh
Q 047673 3 VFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFA 82 (437)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 82 (437)
+..|.+.+...+-++..+...+++ |.+..|- |+|..+.|++.+...+.....++..
T Consensus 208 ~~aW~vtLfmGlqS~~~Y~~~~WL------P~ili~~------------------G~sa~~aG~llsl~~l~~~~~~ll~ 263 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYYIVIGWL------PAILIDR------------------GLSAAEAGSLLSLMQLAQLPTALLI 263 (395)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHH------HHHHHHc------------------CCCHHHhhhHHHHHHHHHHHHHHHH
Confidence 346777777777777776666664 4555554 8999999999999999999999999
Q ss_pred hhhhhhh-chhHHHHHHHHHHHHHHHHHhhcccc----ceeeeee-------cchhhhhhcc--cccccchHHHHHHHHH
Q 047673 83 STVTRAF-GRKASILVGGTTFLTSSAIGGAALDI----YMLILGL-------NAPISLRNGT--PKHIGGFNIGFQVCVA 148 (437)
Q Consensus 83 g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~a~~~----~~l~~~r-------~~~~~i~~~~--~~~r~~~~~~~~~~~~ 148 (437)
-.+++|. .+|+.......++.++.+.+.+.+.- |.++.+- .+...+.+.. +++-++..++.|....
T Consensus 264 P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GY 343 (395)
T COG2807 264 PLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGY 343 (395)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhH
Confidence 9999975 67788888888888888888776532 2222222 4555566666 5555666666666655
Q ss_pred HHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHh
Q 047673 149 TGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIG 187 (437)
Q Consensus 149 ~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~ 187 (437)
+=...||.+.+.+.+..+ +|+......+...+...+.
T Consensus 344 llAa~GP~l~G~lhDa~g--sw~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 344 LLAAFGPWLFGFLHDATG--SWSAPLVLLALATLLMLIF 380 (395)
T ss_pred HHHhhhhhhHhHHHHhcC--ChHHHHHHHHHHHHHHHHH
Confidence 556778999999888776 8998877666555554443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.2e-05 Score=68.41 Aligned_cols=144 Identities=16% Similarity=0.050 Sum_probs=106.0
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFLWWPLGWLV 335 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (437)
+..+. .+++.....+..+++...|.++|++|||+..........+..++-...++...+.++-...+++.+..|...++
T Consensus 111 s~~q~-~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~ 189 (528)
T KOG0253|consen 111 SEGQA-PLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAI 189 (528)
T ss_pred hhhhh-hHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHH
Confidence 44455 67777778889999999999999999999888888777776666665555445555555566666556665666
Q ss_pred ccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhccccCC
Q 047673 336 PSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETK 401 (437)
Q Consensus 336 ~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (437)
-.|..|...|..-+-.. +...+|......+.-....+.||...+.+...-+......+++++|..
T Consensus 190 yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESp 254 (528)
T KOG0253|consen 190 YLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESP 254 (528)
T ss_pred HHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCc
Confidence 67999988888766555 666677777777666677788888877777766666777778888754
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.9e-05 Score=64.68 Aligned_cols=140 Identities=17% Similarity=0.180 Sum_probs=89.2
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhcc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ-------LVLICVYNAGFTFLW 328 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 328 (437)
+..+. ..+.....++..+ .++.|.+.|++|++.++.++.+...++...++...... ...+..+..+.+..+
T Consensus 35 sq~~l-~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~ 112 (250)
T PF06813_consen 35 SQSQL-NTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCW 112 (250)
T ss_pred CHHHH-HHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHH
Confidence 34444 5566666666655 58889999999999999999999999998887765432 222222333333222
Q ss_pred -cccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhccc
Q 047673 329 -WPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLP 398 (437)
Q Consensus 329 -~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 398 (437)
.........+.+| +.||++.|+.-....+++.+...+...+.+......+.+.+....+.+++...+++
T Consensus 113 ~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 113 FNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred hhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhhee
Confidence 2222233447888 57999999999999998888887777666553333334444444444444444443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00018 Score=67.24 Aligned_cols=142 Identities=13% Similarity=0.045 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCc-hhHHHHhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhccccccccc
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGR-KVLFLLGGIQILVSQVMIGSVMATQ-----LVLICVYNAGFTFLWWPLGWLV 335 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 335 (437)
++......++..+++++.|+...|.++ |+.++.+.++++++.+++....... +.+++-+..|++.+.....-.|
T Consensus 74 G~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y 153 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAY 153 (488)
T ss_pred hHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHH
Confidence 788888999999999999999999886 7788889999999988884433221 4444445555555555566778
Q ss_pred ccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHhc---------c-c-chhhHHHHHHHHHHHHhhhccccCC
Q 047673 336 PSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLA---MLYHF---------K-A-GVFFFFGGWLIAMTTFVHFFLPETK 401 (437)
Q Consensus 336 ~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~---------g-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (437)
+++..-.+.|.++++......-++..+||.+-.. +.+.. . + .+.|+.+.+.++..++...+++|..
T Consensus 154 ~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~ 233 (488)
T KOG2325|consen 154 IADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVY 233 (488)
T ss_pred HHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecc
Confidence 7887667778888887776555555555544322 22110 0 1 2345555555666666666666654
Q ss_pred CC
Q 047673 402 NV 403 (437)
Q Consensus 402 ~~ 403 (437)
+.
T Consensus 234 ~~ 235 (488)
T KOG2325|consen 234 RG 235 (488)
T ss_pred cC
Confidence 33
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=97.90 E-value=8e-05 Score=70.75 Aligned_cols=102 Identities=12% Similarity=0.062 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhcc--ccceeeeee------------cchhh
Q 047673 62 QLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAAL--DIYMLILGL------------NAPIS 127 (437)
Q Consensus 62 ~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~--~~~~l~~~r------------~~~~~ 127 (437)
...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++..+.+ |.+.+++.- ...++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 5778888899999999999999999999999999999999999999988876 766655554 44555
Q ss_pred hhhcc-c-------ccccchHHHHHHHHHHHHHHHHHHHhhhhc
Q 047673 128 LRNGT-P-------KHIGGFNIGFQVCVATGILSANLLNYGTQK 163 (437)
Q Consensus 128 i~~~~-~-------~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~ 163 (437)
++|.. . ++.|...+.+....-+|..+++.+.+.+.+
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 66655 2 334788888888888999998888776654
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0001 Score=70.41 Aligned_cols=116 Identities=18% Similarity=0.079 Sum_probs=73.2
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhh----cCch-hHHHHhHHHHHHHHHHHHHHHH----HH----HHHHHHHHH
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADK----LGRK-VLFLLGGIQILVSQVMIGSVMA----TQ----LVLICVYNA 322 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~-~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~ 322 (437)
+.... +.+..+..+...+..++.|+++|| +||| +.++.+.+..+++..++...+. .. .+...++..
T Consensus 43 s~~~~-g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~ 121 (444)
T PRK09669 43 SAAIM-GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSL 121 (444)
T ss_pred CHHHH-HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHH
Confidence 55566 888888889999999999999998 5664 4555666666666554443321 11 111122222
Q ss_pred HhhhcccccccccccccC-ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047673 323 GFTFLWWPLGWLVPSEIF-PLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYH 373 (437)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 373 (437)
++.....| ..++.+|.. ++++|.+..+.......+|+.+++.+...+...
T Consensus 122 ~~t~~~ip-~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~ 172 (444)
T PRK09669 122 VYTAINVP-YCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDI 172 (444)
T ss_pred HHHhhcch-HHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322223 345566766 557799888888888888877777655554443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00047 Score=68.16 Aligned_cols=131 Identities=11% Similarity=0.095 Sum_probs=99.3
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhh-hchhHHHHHHHHHHHHHHHHHhhcccc--------ceeeeee------
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRA-FGRKASILVGGTTFLTSSAIGGAALDI--------YMLILGL------ 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~a~~~--------~~l~~~r------ 122 (437)
|++......+...+....-+..+++|+++|+ +||++.+.++.++..++.++.+++... ...+++-
T Consensus 19 g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G 98 (654)
T TIGR00926 19 GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALG 98 (654)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhh
Confidence 7788888889989888889999999999997 599999999999999999888765211 0011111
Q ss_pred ------cchhhhhhcc-ccc---ccchHHHHHHHHHHHHHHHHHHHhhhhccC----CCcchHHHHHhhHHHHHHHHHhh
Q 047673 123 ------NAPISLRNGT-PKH---IGGFNIGFQVCVATGILSANLLNYGTQKIK----GGWGWRISLAMAVAPASILTIGL 188 (437)
Q Consensus 123 ------~~~~~i~~~~-~~~---r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~----~~~~wr~~f~~~~i~~~~~~~~~ 188 (437)
+..+...|.+ +++ |.....++..+.++|+++++.+...+.... ...+|...|.+.++..+++++.+
T Consensus 99 ~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf 178 (654)
T TIGR00926 99 TGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF 178 (654)
T ss_pred ccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence 6667778888 543 566777888899999999998888776432 12469999999887776655543
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00038 Score=63.77 Aligned_cols=127 Identities=14% Similarity=0.110 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee---------cchhhhhhcccc
Q 047673 64 LAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL---------NAPISLRNGTPK 134 (437)
Q Consensus 64 ~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r---------~~~~~i~~~~~~ 134 (437)
.+.+.-+-.+...+.-+.+.++.+|+.-+.=..+..+++.++.++.++++|.+.=+++- .-..+++-.. .
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~ 139 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-F 139 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-h
Confidence 34444445556666667777888888766556666778888999999998876443333 1112222111 1
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHh-hccCCC
Q 047673 135 HIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIG-LLFLPE 193 (437)
Q Consensus 135 ~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~-~~~l~e 193 (437)
......+.+..+.+.+.++|+..-..+.. .+ .+-|..+++...+.++..+. ++.+|.
T Consensus 140 y~~~~l~~wssGTG~aGl~Ga~~y~~lT~-~g-~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 140 YGKSSLSAWSSGTGGAGLVGALYYLGLTT-LG-LSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred cCccccccccCCcChhhHHHHHHHHHHHH-hC-cCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 12246788888888888888887766665 21 34566777665544443333 334443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00046 Score=66.07 Aligned_cols=117 Identities=15% Similarity=0.080 Sum_probs=75.0
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhh----cCchh-HHHHhHHHHHHHHHHHHHHHHH---H-----HHHHHHHHH
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADK----LGRKV-LFLLGGIQILVSQVMIGSVMAT---Q-----LVLICVYNA 322 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~-~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~ 322 (437)
+.... +.+..+.-+...+.-++.|+++|| +|||| .+.++.+.++++.+++...+.. . .+..+++..
T Consensus 43 ~~~~~-g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~ 121 (460)
T PRK11462 43 PAGFV-GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTL 121 (460)
T ss_pred CHHHH-HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHH
Confidence 45555 777888888889999999999997 57665 5556666777766665543311 1 111222233
Q ss_pred HhhhcccccccccccccCC-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047673 323 GFTFLWWPLGWLVPSEIFP-LEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHF 374 (437)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~p-~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 374 (437)
++.....|- .++.+|+.+ +++|++..+.-...+.+|+.+++.+...+....
T Consensus 122 ~~t~~~ipy-~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~ 173 (460)
T PRK11462 122 LYTVVNIPY-CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLI 173 (460)
T ss_pred HHHHHhccH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333322232 345567665 788999999999888888877777765555443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.044 Score=51.14 Aligned_cols=105 Identities=10% Similarity=0.011 Sum_probs=80.9
Q ss_pred ChhHHHHHHHHHHH-HHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhc---------cc----------c----
Q 047673 60 DSQLLAAFTSSLYI-AGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAA---------LD----------I---- 115 (437)
Q Consensus 60 s~~~~g~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a---------~~----------~---- 115 (437)
.+..+..+-+...+ +..+..++.+++.+++.|.+++-+.+..+....+++++. ++ .
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 56778888888888 778889999999999999999988777777777776653 11 1
Q ss_pred -ceeeeee---------------------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhcc
Q 047673 116 -YMLILGL---------------------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKI 164 (437)
Q Consensus 116 -~~l~~~r---------------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~ 164 (437)
|.+.+.+ .--....|.+ .++-.|..++++.+.+++..++..+...+.+.
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444 1223457888 88889999999999999999999888887753
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00088 Score=58.95 Aligned_cols=143 Identities=10% Similarity=0.027 Sum_probs=96.0
Q ss_pred cCChhHHH-HHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee-----------cch
Q 047673 58 KFDSQLLA-AFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL-----------NAP 125 (437)
Q Consensus 58 ~~s~~~~g-~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r-----------~~~ 125 (437)
+++..|+. -+.-+..-.+.+.-.+.=.+.|..--|++++.-.+.......+..+.++.+.+=+.- +-.
T Consensus 37 NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYy 116 (433)
T KOG3810|consen 37 NLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYY 116 (433)
T ss_pred CccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhh
Confidence 55555443 222233344556666666789988888888877666666677777777766544444 566
Q ss_pred hhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhh
Q 047673 126 ISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLPETPSSIIQR 201 (437)
Q Consensus 126 ~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~ 201 (437)
+|+-+.. |+++.++.+...+..-.|-..|..++-.+.+... .+++..-.+......+..+..+++|..+|....+
T Consensus 117 sYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~-~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~ 192 (433)
T KOG3810|consen 117 SYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLET-LSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFH 192 (433)
T ss_pred heeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcc-cchhhhchhhHHHHHHHHHHHhhCCCCchhhhhh
Confidence 7777778 8999999999988888888888888887775432 3444555555555556667778888776544433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.004 Score=56.72 Aligned_cols=136 Identities=13% Similarity=0.028 Sum_probs=103.3
Q ss_pred cCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhh-hhchhHHHHHHHHHHHHHHHHHhhcc---ccceeeeee------
Q 047673 53 ISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTR-AFGRKASILVGGTTFLTSSAIGGAAL---DIYMLILGL------ 122 (437)
Q Consensus 53 ~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~d-r~Grr~~~~~~~~~~~~~~~~~~~a~---~~~~l~~~r------ 122 (437)
-.+-+|++..|...+.+....|..++-...|++.. |.++|+.-.+++....++..+..++. +.+.+-..-
T Consensus 235 gg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g 314 (403)
T PF03209_consen 235 GGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLG 314 (403)
T ss_pred hhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 34456999999999999999999999999999888 67888888888888888877766553 333222222
Q ss_pred ------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhcc----C---CCcchHHHHHhhHHHHHHHHHhh
Q 047673 123 ------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKI----K---GGWGWRISLAMAVAPASILTIGL 188 (437)
Q Consensus 123 ------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~----~---~~~~wr~~f~~~~i~~~~~~~~~ 188 (437)
...+.+.+.. +++.|.++|.+.....++..++..+++.+.+. . ...+|-.+|.+.++..++.+++.
T Consensus 315 ~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 315 NGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred hhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 5556678888 99999999999999999888888888876541 1 22467788888777666655544
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.015 Score=54.56 Aligned_cols=106 Identities=11% Similarity=0.042 Sum_probs=78.1
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhcc--ccceeeeee------------c
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAAL--DIYMLILGL------------N 123 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~--~~~~l~~~r------------~ 123 (437)
|-+..+..+.......+..++.+++.++.+|+|+|+++.++.++..++.++..+.+ +...+++.. .
T Consensus 268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l 347 (467)
T COG2211 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPL 347 (467)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccc
Confidence 34566777777778888888899999999999999999999999999999998876 555555554 2
Q ss_pred chhhhh------hcc--cccccchHHHHHHHHHHHHHHHHHHHhhhhc
Q 047673 124 APISLR------NGT--PKHIGGFNIGFQVCVATGILSANLLNYGTQK 163 (437)
Q Consensus 124 ~~~~i~------~~~--~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~ 163 (437)
..++++ |+- .++-|...+......=+|..++..+.+++..
T Consensus 348 ~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 348 PWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred cHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333 333 3344677777777777788887776666543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0079 Score=59.70 Aligned_cols=113 Identities=13% Similarity=-0.028 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhh-cCchhHHHHhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhh-ccccc
Q 047673 262 LMSALVTGGIGTVSTILPMILADK-LGRKVLFLLGGIQILVSQVMIGSVMAT--------QLVLICVYNAGFTF-LWWPL 331 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~ 331 (437)
..+........-+..+++|+++|+ +|+++.+.++.++..++..++...... ......+..+..+. +.-+.
T Consensus 26 ~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~ 105 (654)
T TIGR00926 26 TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPC 105 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccC
Confidence 445555556666777889999997 699999999999988888777653210 11222222222222 23344
Q ss_pred ccccccccCChh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047673 332 GWLVPSEIFPLE---IRSAGKSITVAVGLLFTSLVAQTVLAMLYHF 374 (437)
Q Consensus 332 ~~~~~~~~~p~~---~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 374 (437)
..+...|.++++ .|...+.+.+...++|+.+++++.+.+.+..
T Consensus 106 vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~ 151 (654)
T TIGR00926 106 VSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDV 151 (654)
T ss_pred chhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566777643 4677888899999999999999998887543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0049 Score=48.74 Aligned_cols=97 Identities=20% Similarity=0.144 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-
Q 047673 66 AFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT- 132 (437)
Q Consensus 66 ~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~- 132 (437)
.-.++.+....+++++...+.+++|.|+.++++.+.+.+-..... -++.+.++.+- ....++.+..
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~-~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~ 119 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF-YPNSYTLYPASALLGFGAALLWTAQGTYLTSYST 119 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence 344456666778888888999999999999999999986665543 34444444333 4457788888
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHhhhhc
Q 047673 133 PKHIGGFNIGFQVCVATGILSANLLNYGTQK 163 (437)
Q Consensus 133 ~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~ 163 (437)
+++|++-.+++......+.++|.++..++.+
T Consensus 120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 120 EETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988888888888887766543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.011 Score=52.92 Aligned_cols=146 Identities=19% Similarity=0.092 Sum_probs=80.1
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccccc-c
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF--LWWPL-G 332 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~ 332 (437)
+..+. ..+.....+...+...+.|.++||+|||+..+..+++..++.+.-... +...+.+.=...+.+. .+..- .
T Consensus 67 ~~~qI-a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~-~~~~L~~GRvlgGiaTSLLfS~FEs 144 (354)
T PF05631_consen 67 SEHQI-AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSS-NYPVLLLGRVLGGIATSLLFSAFES 144 (354)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556 778888888999999999999999999999888888877777543332 2222222222222221 11111 1
Q ss_pred ccc---ccccCChhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhccc--c-hhhHHHHHHHHHHHHhhhccccCCCC
Q 047673 333 WLV---PSEIFPLEIRSAGKSITVAV-GLLFTSLVAQTVLAMLYHFKA--G-VFFFFGGWLIAMTTFVHFFLPETKNV 403 (437)
Q Consensus 333 ~~~---~~~~~p~~~r~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (437)
|.. -..-+|++..+...+..... +.+..++.+.+...+.+..+. . ++..-..+..+..+++....+|+.+.
T Consensus 145 W~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 145 WMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 221 12235666666666655533 334444555555555665553 3 33333333344444444445565443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00047 Score=64.36 Aligned_cols=129 Identities=9% Similarity=-0.042 Sum_probs=107.9
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cch
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAP 125 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~ 125 (437)
+-.+...|.....-..|-.+.-++.+++..|+|+-+++.+++.+..+=.+..++.+|.|+.+... ++.
T Consensus 402 ~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~ 481 (618)
T KOG3762|consen 402 GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAII 481 (618)
T ss_pred CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHH
Confidence 44666677777777788888889999999999999999999999999999999999999888766 788
Q ss_pred hhhhhcc-cccccchHHHHH-HHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhc
Q 047673 126 ISLRNGT-PKHIGGFNIGFQ-VCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLL 189 (437)
Q Consensus 126 ~~i~~~~-~~~r~~~~~~~~-~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~ 189 (437)
+|+++.. |+-|..+.++.+ ...++|--+|.++++.+.... +=|..|.+.++.+++.++...
T Consensus 482 sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f---g~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 482 SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF---GARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee---hhHHHHHHHHHHHHHHHHHHH
Confidence 8999999 999999999885 667888889999998887665 678888887777666555443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.015 Score=53.66 Aligned_cols=128 Identities=11% Similarity=0.009 Sum_probs=79.1
Q ss_pred HHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cccccccccccccCChhhhhhHH
Q 047673 272 GTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF--LWWPLGWLVPSEIFPLEIRSAGK 349 (437)
Q Consensus 272 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~r~~~~ 349 (437)
.++..+....+.|.++.|++++.+.+...+...++.+..... .+-+.-+.++. ..-...++++-...|+++--++.
T Consensus 54 yl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~--~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vt 131 (412)
T PF01770_consen 54 YLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVL--AMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVT 131 (412)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHH--HHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHH
Confidence 344555667889999999999999988877777766665433 22222223332 22223344555566888778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHHHHhhhccccCC
Q 047673 350 SITVAVGLLFTSLVAQTVLAMLYHFK--AGVFFFFGGWLIAMTTFVHFFLPETK 401 (437)
Q Consensus 350 g~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (437)
+.......+|..++..+...+.+..+ +.....+.......+.+..+++|..+
T Consensus 132 s~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~ 185 (412)
T PF01770_consen 132 SYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPK 185 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 88888887777777766655554332 33344444445555556666676543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.023 Score=44.94 Aligned_cols=107 Identities=14% Similarity=0.040 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccccccccccccC
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ-LVLICVYNAGFTFLWWPLGWLVPSEIF 340 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (437)
..-..+......+..++.+.+.+++|.|+.++++.+...+-........... .....+.+.+.+..+... ..++.+..
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aq-g~ylt~~s 118 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQ-GTYLTSYS 118 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhh-hHHHHHcC
Confidence 3445555566777788889999999999999999988887666654443332 222223333333333332 44556888
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047673 341 PLEIRSAGKSITVAVGLLFTSLVAQTVLA 369 (437)
Q Consensus 341 p~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 369 (437)
.++.+++..++...+...+..+++.+.-.
T Consensus 119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 119 TEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred CHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999888888776666654433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.37 Score=46.17 Aligned_cols=104 Identities=10% Similarity=-0.002 Sum_probs=72.4
Q ss_pred ChhHHHHHHHHHHH-HHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhc--cc-------c--------------
Q 047673 60 DSQLLAAFTSSLYI-AGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAA--LD-------I-------------- 115 (437)
Q Consensus 60 s~~~~g~~~s~~~l-~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a--~~-------~-------------- 115 (437)
.++.+..+-....+ ...+......+++++++|.+++-+....+.....+.++. |+ .
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 56666666665555 345557788999999999999887766666665555542 11 0
Q ss_pred ceeeeee----------------c-----chhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhc
Q 047673 116 YMLILGL----------------N-----APISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQK 163 (437)
Q Consensus 116 ~~l~~~r----------------~-----~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~ 163 (437)
+.+.+.| + --.+..|.+ .++-.|..+++..+.++|.++++.+...+.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111 1 124467888 8999999999999999999999988887776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0062 Score=56.75 Aligned_cols=41 Identities=15% Similarity=-0.041 Sum_probs=32.6
Q ss_pred cccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047673 333 WLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYH 373 (437)
Q Consensus 333 ~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 373 (437)
.++-+.+..|..-|+.+.+.|.+.++|+..-..+.-.+.|.
T Consensus 427 ~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 427 MAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 44556788899999999999999999988777666666553
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.16 Score=45.94 Aligned_cols=42 Identities=10% Similarity=-0.049 Sum_probs=35.7
Q ss_pred cccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047673 333 WLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHF 374 (437)
Q Consensus 333 ~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 374 (437)
.+..+.+.+|...|+-+.+.+...++|+-.-..+...+.|..
T Consensus 391 maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 391 MAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL 432 (510)
T ss_pred HHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence 456688899999999999999999999888888888777654
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.052 Score=51.58 Aligned_cols=111 Identities=11% Similarity=-0.020 Sum_probs=72.1
Q ss_pred HHHHHHHHHHH-HHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHH-----------------------------
Q 047673 262 LMSALVTGGIG-TVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMA----------------------------- 311 (437)
Q Consensus 262 ~~~~~~~~~~~-~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 311 (437)
.++-+...+.. ++..++.+++++|++|+++.............++.+...
T Consensus 46 ~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~ 125 (472)
T TIGR00769 46 PFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAI 125 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHH
Confidence 34444333333 334788999999999999876665555555544444311
Q ss_pred --HH-HHHHHHHHHHhhhcccc-cccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047673 312 --TQ-LVLICVYNAGFTFLWWP-LGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLY 372 (437)
Q Consensus 312 --~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 372 (437)
.+ .....+..-.++....+ +.|.+.+|.+..++..+-+++....+++|..+++.+...+.+
T Consensus 126 ~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 126 LRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 11112222222222233 568889999999999999999999999999999988887763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.074 Score=50.49 Aligned_cols=137 Identities=12% Similarity=0.040 Sum_probs=99.1
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhc----------cccceeeeee-----
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAA----------LDIYMLILGL----- 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a----------~~~~~l~~~r----- 122 (437)
|+++...|.+..+..++..+|..+.....-+..-|+++..+.++..+..+....- ++. .+..+-
T Consensus 251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~-~f~lgd~~l~~ 329 (433)
T PF03092_consen 251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQ-WFALGDTILEE 329 (433)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCe-EEEEEhHHHHH
Confidence 3799999999988999999999999888888888999888888777766654322 111 222222
Q ss_pred --------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCC-----cchHHHHHhhHHHHHHHHHhh
Q 047673 123 --------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGG-----WGWRISLAMAVAPASILTIGL 188 (437)
Q Consensus 123 --------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~-----~~wr~~f~~~~i~~~~~~~~~ 188 (437)
....+++|.+ +..-|...++.....++|..++..++..+.+..+. .+-.+..++..+..++.+.+.
T Consensus 330 ~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll 409 (433)
T PF03092_consen 330 VIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLL 409 (433)
T ss_pred HHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 4446678999 88899999999999999999999998887764431 122244455555566666666
Q ss_pred ccCCCCh
Q 047673 189 LFLPETP 195 (437)
Q Consensus 189 ~~l~esp 195 (437)
.++|+..
T Consensus 410 ~lLp~~~ 416 (433)
T PF03092_consen 410 FLLPPQK 416 (433)
T ss_pred HHcCCCc
Confidence 6677644
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.073 Score=45.47 Aligned_cols=57 Identities=14% Similarity=0.017 Sum_probs=36.9
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhhhhc--cCCCcchHHHHHhhHHHHHHHHHhhcc
Q 047673 134 KHIGGFNIGFQVCVATGILSANLLNYGTQK--IKGGWGWRISLAMAVAPASILTIGLLF 190 (437)
Q Consensus 134 ~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~--~~~~~~wr~~f~~~~i~~~~~~~~~~~ 190 (437)
++|+..+.....+.++|.++.-..-..-.+ ......|++.+.+.+++.++-+++...
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~i 60 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYII 60 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888999998877654322201 111236999998877766665554443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.75 Score=45.15 Aligned_cols=127 Identities=16% Similarity=0.075 Sum_probs=88.8
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhh-chhHHHHHHHHHHHHHHHHHhhccccceeee---------------e
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAF-GRKASILVGGTTFLTSSAIGGAALDIYMLIL---------------G 121 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~---------------~ 121 (437)
|.+.....-..+.+.-...+..+.++.++|-| ||-+++.++.++..++..+..++.....+.. .
T Consensus 69 ~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s 148 (571)
T KOG1237|consen 69 HASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPS 148 (571)
T ss_pred ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcc
Confidence 56667777788888888888889999999986 9999999999999998776665533332221 0
Q ss_pred e----------------------cchhhhhhcc-c------ccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHH
Q 047673 122 L----------------------NAPISLRNGT-P------KHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRI 172 (437)
Q Consensus 122 r----------------------~~~~~i~~~~-~------~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~ 172 (437)
+ ...++-+|-+ + +++...+.++....++|..++..+-....+. .+|.+
T Consensus 149 ~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~---~~w~l 225 (571)
T KOG1237|consen 149 KLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDN---VGWKL 225 (571)
T ss_pred hHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhc---cccee
Confidence 0 3344445554 2 2234677888888999999888887776543 38998
Q ss_pred HHHhhHHHHHHHHHh
Q 047673 173 SLAMAVAPASILTIG 187 (437)
Q Consensus 173 ~f~~~~i~~~~~~~~ 187 (437)
-|.+..+...+++++
T Consensus 226 gf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 226 GFGIPTVLNALAILI 240 (571)
T ss_pred eccHHHHHHHHHHHH
Confidence 888866555544433
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.071 Score=49.24 Aligned_cols=116 Identities=14% Similarity=0.055 Sum_probs=78.0
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHhhhcccc-
Q 047673 257 ESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMAT---QLVL--ICVYNAGFTFLWWP- 330 (437)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~- 330 (437)
.+.+ .+...++.+..++..+.+-|+.||+|-|....++.....++..+=...... .... ++..+........+
T Consensus 78 ~~~~-~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~F 156 (480)
T KOG2563|consen 78 SSAA-DWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPF 156 (480)
T ss_pred hHHH-HHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhH
Confidence 3344 688888999999999999999999999999999999988888764443332 1111 22222221111111
Q ss_pred ---cccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047673 331 ---LGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYH 373 (437)
Q Consensus 331 ---~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 373 (437)
++.-+..-.+|+++|+++..+..+.+.+|..++..+-+.+..+
T Consensus 157 im~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 157 ILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred hhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 1112334568999999999999998888887776665555543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.058 Score=36.90 Aligned_cols=44 Identities=30% Similarity=0.332 Sum_probs=37.1
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHH
Q 047673 255 LSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQI 299 (437)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 299 (437)
++..+. +.+..+..+..+++.++.|+++||+++++.......++
T Consensus 32 l~~~~i-Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 32 LSPSQI-GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 366677 89999999999999999999999999998776655443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.24 Score=44.09 Aligned_cols=112 Identities=19% Similarity=0.151 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhh-cccccccccccc
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMA--TQLVLICVYNAGFTF-LWWPLGWLVPSE 338 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 338 (437)
........+...++.++.|.+.||.|||+.+..+......+.+....... ...........+.+. ...+....+..|
T Consensus 42 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 121 (338)
T COG0477 42 GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSE 121 (338)
T ss_pred HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 67777777888888899999999999997777776553444333333322 112222222122222 344555667788
Q ss_pred cCCh-hhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 047673 339 IFPL-EIRSAGKSITVA-VGLLFTSLVAQTVLAMLYH 373 (437)
Q Consensus 339 ~~p~-~~r~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 373 (437)
.+|+ +.|+...+.... ...++..+++.+.+.+...
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 122 WFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887 677888888777 4666666666555555544
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.2 Score=46.29 Aligned_cols=81 Identities=7% Similarity=-0.022 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCC
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFLWWPLGWLVPSEIFP 341 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (437)
+.+...-.+-.++..++..+..+|+..+.-......++.+++++..+..+...-.+.+...+.+.+.+-+...-.+..+|
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~ 141 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTHFYG 141 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHHhcC
Confidence 34555555667778888999999987555455566677777777766555443333344444444444443333345666
Q ss_pred h
Q 047673 342 L 342 (437)
Q Consensus 342 ~ 342 (437)
+
T Consensus 142 ~ 142 (402)
T PF02487_consen 142 K 142 (402)
T ss_pred c
Confidence 4
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=1.1 Score=43.60 Aligned_cols=128 Identities=13% Similarity=-0.094 Sum_probs=68.1
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHH-HHHH-HHHHHHHHhhcccc----ceeeeee---------
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILV-GGTT-FLTSSAIGGAALDI----YMLILGL--------- 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~-~~~~-~~~~~~~~~~a~~~----~~l~~~r--------- 122 (437)
|-+..+.+.+.+++.+|.++|+..++++.++--++....- ...+ .+++..+......+ ..+...-
T Consensus 46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G 125 (521)
T PRK03612 46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIG 125 (521)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6688899999999999999999999988754333322111 1111 11111111111111 0000000
Q ss_pred cchhhhhhcc-c---ccccchHHHHHHHHHHHHHHHHHHHhhhhc-cCCCcchHHHHHhhHHHHHHHHHh
Q 047673 123 NAPISLRNGT-P---KHIGGFNIGFQVCVATGILSANLLNYGTQK-IKGGWGWRISLAMAVAPASILTIG 187 (437)
Q Consensus 123 ~~~~~i~~~~-~---~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~-~~~~~~wr~~f~~~~i~~~~~~~~ 187 (437)
....++.... . ++-|+..|-......+|.++|.++.+++.- ..+ ..+..++++++..+++++.
T Consensus 126 ~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG--~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 126 MEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLG--LIRTAALTGSLNLLAALVF 193 (521)
T ss_pred HHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHH
Confidence 2222333333 2 224677788888888898888888766542 332 2455555555444444333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.011 Score=57.52 Aligned_cols=112 Identities=11% Similarity=-0.032 Sum_probs=0.9
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH----------------------
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ---------------------- 313 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 313 (437)
+..+. +.+.+..-++.++..++..+..+|..|-+.+-.+.++++++.+++.......
T Consensus 36 ~S~~~-G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c 114 (539)
T PF03137_consen 36 SSSQS-GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLC 114 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccc
Confidence 45566 8888889999999999999999998888888888888888887665421000
Q ss_pred --------------------------HHHHHHHHHHhhhc---ccccccccccccCChhhhhhHHHHHHHHHHHHHHHHH
Q 047673 314 --------------------------LVLICVYNAGFTFL---WWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVA 364 (437)
Q Consensus 314 --------------------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~ 364 (437)
..++++.....+.+ ..++..+|+-|..+++..+...|+......+|-.++-
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf 194 (539)
T PF03137_consen 115 DSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGF 194 (539)
T ss_dssp -------------------------------------SSS----------------------------------------
T ss_pred cccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHH
Confidence 11111111222223 3445678888999999888888888887777665554
Q ss_pred HHHH
Q 047673 365 QTVL 368 (437)
Q Consensus 365 ~~~~ 368 (437)
.+.+
T Consensus 195 ~lg~ 198 (539)
T PF03137_consen 195 LLGS 198 (539)
T ss_dssp ----
T ss_pred HHHH
Confidence 4443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=94.11 E-value=3.4 Score=39.28 Aligned_cols=103 Identities=11% Similarity=-0.003 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCch-hHHHHhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhhhcc
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRK-VLFLLGGIQILVSQVMIGSV------------MATQLVLICVYNAGFTFLW 328 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~-~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 328 (437)
......+.++.++|+.+..+.. .-++| +.+.+..+.=.+..-++... .+.....+..+..++..|+
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 5677778889999998665432 11222 12222222211111111111 1111333344444444443
Q ss_pred -cccccccccccCChhhhhhHHHHHHHHHHHHHHHHHH
Q 047673 329 -WPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQ 365 (437)
Q Consensus 329 -~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~ 365 (437)
......+..+..++++|..+-.+....-.+|-.+|..
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~ 426 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAV 426 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677788888887777666666665554443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.13 Score=47.76 Aligned_cols=65 Identities=17% Similarity=0.108 Sum_probs=50.4
Q ss_pred cchhhhhhcc-cc---cccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhcc
Q 047673 123 NAPISLRNGT-PK---HIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLF 190 (437)
Q Consensus 123 ~~~~~i~~~~-~~---~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~ 190 (437)
...++.+|.+ ++ +|.+...++..+.++|..++..+...+.+. ++|.+.|.+.++..+++++.++.
T Consensus 53 ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~---~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 53 NISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQN---YGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC---S-HHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccc---cchhhhhhHHHHHHHHHHHHHHh
Confidence 6778888888 55 356677788999999999999998888754 48999999988777776665443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=93.73 E-value=1.4 Score=42.24 Aligned_cols=102 Identities=18% Similarity=0.086 Sum_probs=65.8
Q ss_pred HHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHH--H----------------------------HHHHHHH
Q 047673 271 IGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMAT--Q----------------------------LVLICVY 320 (437)
Q Consensus 271 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~----------------------------~~~~~~~ 320 (437)
+.++...+..++++++++.++.............++++.... . ....+.+
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 445667778899999999987665554444444433332110 0 0011111
Q ss_pred HHH--hhhc-ccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047673 321 NAG--FTFL-WWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLY 372 (437)
Q Consensus 321 ~~~--~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 372 (437)
... ++.. ..-+-|.+.+|..+.++..+.+++....++++..+++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1111 222457889999999999999999999999999999998887777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.31 Score=45.33 Aligned_cols=109 Identities=12% Similarity=-0.070 Sum_probs=69.9
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhh-cccccccccccccCChh---hhhhHHHHHHHHH
Q 047673 290 VLFLLGGIQILVSQVMIGSVMATQ---------LVLICVYNAGFTF-LWWPLGWLVPSEIFPLE---IRSAGKSITVAVG 356 (437)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~~ 356 (437)
+.+.++.++..++.+++....... ...+.+..+..+. +.=|....+.+|.++++ .|.+.+...+...
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 456677777777777755443211 2333333333333 23344455667777654 5677788889999
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhccc
Q 047673 357 LLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLP 398 (437)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 398 (437)
++|+.++....+++.++.+|...+..+.++.+.+++.+...+
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~ 123 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR 123 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence 999999999999999999988777777766766666655543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=92.98 E-value=1.4 Score=41.74 Aligned_cols=36 Identities=17% Similarity=0.070 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHH
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGI 297 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 297 (437)
.++.....+..++..+....+..|+..+.-+..+++
T Consensus 48 ~~~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv 83 (437)
T TIGR00939 48 TYYTLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLV 83 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccchhHHHHH
Confidence 455555566667777777777777765333333433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=92.39 E-value=1.4 Score=41.65 Aligned_cols=104 Identities=12% Similarity=-0.005 Sum_probs=79.7
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhh---ccc----c---c----eeeeee-
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGA---ALD----I---Y----MLILGL- 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---a~~----~---~----~l~~~r- 122 (437)
|+++.++|..-+...+....+.....++.+|+|..|.=+.+.........++.. .+. . . ...++|
T Consensus 289 G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~ 368 (432)
T PF06963_consen 289 GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRI 368 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999988877766555444333322 221 1 1 233444
Q ss_pred -------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHhhh
Q 047673 123 -------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANLLNYGT 161 (437)
Q Consensus 123 -------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~~~l 161 (437)
+..-++.|.. +++||...+...+..++-.++...++...
T Consensus 369 GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 369 GLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6667778888 99999999999999888888877776544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.29 E-value=1.9 Score=40.90 Aligned_cols=105 Identities=14% Similarity=0.018 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccccccccccccC
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ-LVLICVYNAGFTFLWWPLGWLVPSEIF 340 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (437)
.....+......+..++.+.+.|+++.|..+.++..+.......+....... .....+.+++.++.+ .-...+.+|..
T Consensus 53 y~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw-~GqG~ylt~~s 131 (461)
T KOG3098|consen 53 YYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLW-TGQGGYLTSNS 131 (461)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHhee-cccceehhhcC
Confidence 3446677788889999999999999999999999998888777777665443 333334444444333 33345668999
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHH
Q 047673 341 PLEIRSAGKSITVAVGLLFTSLVAQTV 367 (437)
Q Consensus 341 p~~~r~~~~g~~~~~~~~~~~~~~~~~ 367 (437)
.++.+.+..++...+...+.++|+.+.
T Consensus 132 t~~tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 132 TRETIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred ChhhHHHHHHHHHHHHHHHHHhhhHhh
Confidence 999999999999998888777765544
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.91 Score=31.58 Aligned_cols=56 Identities=16% Similarity=-0.021 Sum_probs=49.0
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHH
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMAT 312 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (437)
+..+. +++.+...++.++|.+...++.++.++++.+..+.+...+..+.+.+..+.
T Consensus 25 s~~~a-g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~ 80 (85)
T PF06779_consen 25 SLSQA-GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSF 80 (85)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 66777 899999999999999999999999888899999999888888888776654
|
Note that many members are hypothetical proteins. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.74 Score=45.89 Aligned_cols=149 Identities=13% Similarity=0.011 Sum_probs=92.3
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH----------------------
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ---------------------- 313 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 313 (437)
+..+. +.+....-++..+...+..+..-|..|-+++-.+.++++++.++..+.....
T Consensus 130 ~Ss~s-G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s 208 (735)
T KOG3626|consen 130 SSSQS-GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLS 208 (735)
T ss_pred CCCcc-eeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccc
Confidence 33444 6666667777777788888888898888999999999988888776542100
Q ss_pred ----------------------------HHHHHHHHHHhhhcc---cccccccccccCChhhhhhHHHHHHHHHHHHHHH
Q 047673 314 ----------------------------LVLICVYNAGFTFLW---WPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSL 362 (437)
Q Consensus 314 ----------------------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~ 362 (437)
.+.+++.....+.+- .++..+|+-|...++..+...|+.+.+..+|-++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPai 288 (735)
T KOG3626|consen 209 FCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAI 288 (735)
T ss_pred hhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHH
Confidence 111222222223333 3455678888888888888899988887776665
Q ss_pred HHHHHHHHHH----h--------------cc-cchhhHHHHHHHHHHHHhhhccccCCCCCH
Q 047673 363 VAQTVLAMLY----H--------------FK-AGVFFFFGGWLIAMTTFVHFFLPETKNVPI 405 (437)
Q Consensus 363 ~~~~~~~~~~----~--------------~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (437)
+-.+.+.... . .| ||.-+++++...+...+.++++|++..++.
T Consensus 289 GfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~ 350 (735)
T KOG3626|consen 289 GFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQ 350 (735)
T ss_pred HHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence 5554444432 1 12 344444444455555556666776655543
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=88.92 E-value=0.11 Score=46.92 Aligned_cols=100 Identities=11% Similarity=-0.011 Sum_probs=2.1
Q ss_pred HHHHHHHHHHHHhhhHHHHhhhc-CchhHHHHhHHHHH--HHHHHHH-HH----------HHHHHHHHHHHHHHhhhcc-
Q 047673 264 SALVTGGIGTVSTILPMILADKL-GRKVLFLLGGIQIL--VSQVMIG-SV----------MATQLVLICVYNAGFTFLW- 328 (437)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~--~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~- 328 (437)
....+.++.++|+.+.++..-+. .+|.+. +..+.=. +-++++. .. .+.....+..+.++++.|+
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 45567888999999888753221 233333 2222111 1111111 11 1111333344444555544
Q ss_pred cccccccccccCChhhhhhHHHHHHHHHHHHHHHHH
Q 047673 329 WPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVA 364 (437)
Q Consensus 329 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~ 364 (437)
.++...+..+..++++|..+-.+....-.+|-.+|.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs 301 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGS 301 (309)
T ss_dssp -HHHH-------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667888878777776655555554444433
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.89 E-value=8.2 Score=37.70 Aligned_cols=47 Identities=9% Similarity=-0.019 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcc-cchhhHHHHHHHHHHH
Q 047673 345 RSAGKSITVAVGLLFTSLVAQTVLAMLY-HFK-AGVFFFFGGWLIAMTT 391 (437)
Q Consensus 345 r~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~ 391 (437)
-+...|-.+....+|+.+++.+.+.+.- ..| ....++.+.+.++.++
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3566788888899999999988887765 455 3344444444444443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.17 E-value=16 Score=34.88 Aligned_cols=112 Identities=14% Similarity=-0.021 Sum_probs=71.9
Q ss_pred HHHHHHHHH-HHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH---------------------------
Q 047673 262 LMSALVTGG-IGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ--------------------------- 313 (437)
Q Consensus 262 ~~~~~~~~~-~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 313 (437)
..+-...-+ +.++..++..++.+++.+.++............+++++.....
T Consensus 64 ~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~il 143 (509)
T COG3202 64 SFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFIL 143 (509)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeE
Confidence 444444444 5677788889999999999887666555555555554432200
Q ss_pred ----HHHHHHHHHH--hhh-cccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047673 314 ----LVLICVYNAG--FTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYH 373 (437)
Q Consensus 314 ----~~~~~~~~~~--~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 373 (437)
......+... ++. ...-+-|...+|....++..+-+++.+..++++..+++.+..++..+
T Consensus 144 i~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 144 IVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred eecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 0111111111 111 12224466788999999999999999999999999998888877763
|
|
| >KOG2881 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.96 E-value=7.8 Score=33.08 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=19.9
Q ss_pred HHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHH
Q 047673 270 GIGTVSTILPMILADKLGRKVLFLLGGIQILVS 302 (437)
Q Consensus 270 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 302 (437)
++..+..+-+-+++.|+..|++.+.+.+++.+.
T Consensus 251 lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~F 283 (294)
T KOG2881|consen 251 LCTGLAVIGGKYLASKISVRTVTLIGGILFIIF 283 (294)
T ss_pred HHHHHHHhhhHHHhhhheeEEEEEecchhHHHH
Confidence 334444444556778888887777666655444
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.92 E-value=22 Score=33.17 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=14.6
Q ss_pred cchhhHHHHHHHHHHHHhhhcccc
Q 047673 376 AGVFFFFGGWLIAMTTFVHFFLPE 399 (437)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~ 399 (437)
...++..+.+..+.+++++...++
T Consensus 182 A~~yF~~s~~~~llC~i~y~~l~~ 205 (406)
T KOG1479|consen 182 ALIYFITSTVILLLCFVLYLVLPK 205 (406)
T ss_pred eehhHHHHHHHHHHHHHHHHHhhc
Confidence 345666666666666666665543
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.26 E-value=4 Score=29.39 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=29.7
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 047673 341 PLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKA 376 (437)
Q Consensus 341 p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 376 (437)
.++.++.+.++-...-.+++.+.+..+|++.|++-.
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa~iG~llD~~ag 71 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAG 71 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345677888888888899999999999999998753
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.99 E-value=6.7 Score=28.27 Aligned_cols=48 Identities=17% Similarity=0.039 Sum_probs=34.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhhhhh-chhHHHHHHHHHHHHHHH
Q 047673 60 DSQLLAAFTSSLYIAGLIASLFASTVTRAF-GRKASILVGGTTFLTSSA 107 (437)
Q Consensus 60 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~ 107 (437)
...+...-.+.=+++..+.....||+.||| |.++..++..++.+.+.-
T Consensus 40 k~~~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG 88 (116)
T COG5336 40 KGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAG 88 (116)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 344555666777888888888999999997 888877776666555443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.84 E-value=0.86 Score=42.51 Aligned_cols=104 Identities=18% Similarity=0.118 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhh----cCchhHH-HHhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHh
Q 047673 262 LMSALVTGGIGTVSTILPMILADK----LGRKVLF-LLGGIQILVSQVMIGSVMATQ------------LVLICVYNAGF 324 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~-~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 324 (437)
.......-+.+++..++.|..+|| +||||.. ..+....+++++++.+..+.. ...+.++..++
T Consensus 70 S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~ 149 (498)
T KOG0637|consen 70 SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGF 149 (498)
T ss_pred cccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHh
Confidence 455666677888899999999996 6777654 445555666777776665433 12333333333
Q ss_pred hh---c---ccccccccccccCChhhhhh-HHHHHHHHHHHHHHHHHH
Q 047673 325 TF---L---WWPLGWLVPSEIFPLEIRSA-GKSITVAVGLLFTSLVAQ 365 (437)
Q Consensus 325 ~~---~---~~~~~~~~~~~~~p~~~r~~-~~g~~~~~~~~~~~~~~~ 365 (437)
-. . .....-++..|+..++.+.+ +.+....+..+|+.++-.
T Consensus 150 ~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~ 197 (498)
T KOG0637|consen 150 WLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYA 197 (498)
T ss_pred HHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeee
Confidence 22 1 11223456678776666666 888888877777765543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 437 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 3e-20 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 437 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.97 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.95 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.95 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.91 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.89 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.19 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.04 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.99 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.96 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.94 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.84 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-45 Score=349.90 Aligned_cols=400 Identities=23% Similarity=0.354 Sum_probs=307.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHh
Q 047673 3 VFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFA 82 (437)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 82 (437)
++.+.+++++++|.+.+|||.++++.+. |.+.++|..+.. .+.+.+..+.|++.+++.+|..+|++++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~--~~~~~~~~~~~~----------~~~~~~~~~~g~~~s~~~~G~~iG~~~~ 75 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTV--ESLNTVFVAPQN----------LSESAANSLLGFCVASALIGCIIGGALG 75 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTH--HHHHHHHTGGGC----------CCHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCCC----------CCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999765 788887743221 1114467889999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHh------------------hccccceeeeee------------cchhhhhhcc
Q 047673 83 STVTRAFGRKASILVGGTTFLTSSAIGG------------------AALDIYMLILGL------------NAPISLRNGT 132 (437)
Q Consensus 83 g~l~dr~Grr~~~~~~~~~~~~~~~~~~------------------~a~~~~~l~~~r------------~~~~~i~~~~ 132 (437)
|+++||+|||+++.++.+++.+++++++ +++|+++++++| .++.+++|+.
T Consensus 76 G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~ 155 (491)
T 4gc0_A 76 GYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELA 155 (491)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999998 478999999999 6788999999
Q ss_pred -cccccchHHHHHHHHHHHHHHHHHHHhhhhccCC-----CcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHH
Q 047673 133 -PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKG-----GWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQ 206 (437)
Q Consensus 133 -~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~-----~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~ 206 (437)
+++|++..++.+.+..+|.++++.++..+....+ .++||+.+.+..++.++.++..+++||||+|+..+++ .+
T Consensus 156 p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~-~~ 234 (491)
T 4gc0_A 156 PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGK-QE 234 (491)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTC-HH
T ss_pred CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCc-hh
Confidence 9999999999999999999999998887654322 3579999999999999998999999999999999999 89
Q ss_pred HHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhccccccc---------------------------ccccch
Q 047673 207 KAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQ---------------------------LLSEST 259 (437)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~ 259 (437)
++.+.+++...++...++..+........+... .....++.+.... ..+...
T Consensus 235 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (491)
T 4gc0_A 235 QAEGILRKIMGNTLATQAVQEIKHSLDHGRKTG-GRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDI 313 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh-hHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccc
Confidence 888888777655433333222222211111110 0011111000000 002333
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhccccccc
Q 047673 260 SLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ------LVLICVYNAGFTFLWWPLGW 333 (437)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 333 (437)
. .......++..+++.++++++.||+|||+.++.+...+.++.+.+....... ....+++..++..+..++.+
T Consensus 314 ~-~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (491)
T 4gc0_A 314 A-LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCW 392 (491)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3 5566777888999999999999999999999999888888877766544322 34444555566667788888
Q ss_pred ccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc------c-cchhhHHHHHHHHHHHHhhhccccCCCCCHH
Q 047673 334 LVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHF------K-AGVFFFFGGWLIAMTTFVHFFLPETKNVPIE 406 (437)
Q Consensus 334 ~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (437)
.+.+|++|++.|+++.|+.+.++++++.+++.+++.+.+.. + ...++++++++++..++.++++||||+|+.|
T Consensus 393 ~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLe 472 (491)
T 4gc0_A 393 VLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE 472 (491)
T ss_dssp HHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHH
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHH
Confidence 89999999999999999999999999999998887664422 2 3356777888888888888999999999999
Q ss_pred HHHHHHccccc
Q 047673 407 QMDKVWRVHWF 417 (437)
Q Consensus 407 ~~~~~~~~~~~ 417 (437)
|+|+.+|++.+
T Consensus 473 ei~~~f~~~~~ 483 (491)
T 4gc0_A 473 ELEALWEPETK 483 (491)
T ss_dssp HHGGGTC----
T ss_pred HHHHHhCCCCc
Confidence 99998876544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-31 Score=247.76 Aligned_cols=360 Identities=9% Similarity=-0.003 Sum_probs=250.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhh
Q 047673 4 FVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFAS 83 (437)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g 83 (437)
+.+.....+++..+..+++....++.. |.+.+++ |++..+.|++.+++.++..++++++|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------g~s~~~~g~~~~~~~~~~~i~~~~~G 82 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILL--PQFQQAF------------------TLTNFQAGLIQSAFYFGYFIIPIPAG 82 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHS------------------CCCSHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHH
Confidence 446667777788888999888777654 6777776 89999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHH---hhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHH
Q 047673 84 TVTRAFGRKASILVGGTTFLTSSAIG---GAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCV 147 (437)
Q Consensus 84 ~l~dr~Grr~~~~~~~~~~~~~~~~~---~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~ 147 (437)
+++||+|||+++.++.++.+++.+++ ++++|++.++++| ...+++.|++ +++|++++++.+.+.
T Consensus 83 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 162 (438)
T 3o7q_A 83 ILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFN 162 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHH
Confidence 99999999999999999999999999 8899999999999 6678899999 999999999999999
Q ss_pred HHHHHHHHHHHhhhh-ccCCC----------------------cchHHHHHhhHHHHHHHHHh--hccCCCChhHHHhhC
Q 047673 148 ATGILSANLLNYGTQ-KIKGG----------------------WGWRISLAMAVAPASILTIG--LLFLPETPSSIIQRN 202 (437)
Q Consensus 148 ~~G~~~~~~~~~~l~-~~~~~----------------------~~wr~~f~~~~i~~~~~~~~--~~~l~esp~~~~~~~ 202 (437)
.+|.++++.+++.+. ...+. .+||+.|++.++..++..+. ....||+++...+++
T Consensus 163 ~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 242 (438)
T 3o7q_A 163 SFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA 242 (438)
T ss_dssp HHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS
T ss_pred HHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc
Confidence 999999999999887 44321 01999997766554443333 334577664221111
Q ss_pred CCHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhh-h-hcccccccccccchHHHHHHHHHHHHHHHHhhhHH
Q 047673 203 NDYQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKK-I-IDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPM 280 (437)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 280 (437)
+ .++..+..++..+++................. ....+.. . ++... -.+.... +.......++.+++.++.+
T Consensus 243 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---g~~~~~~-~~~~~~~~~~~~~~~~~~g 316 (438)
T 3o7q_A 243 K-QGSFSASLSRLARIRHWRWAVLAQFCYVGAQT-ACWSYLIRYAVEEIP---GMTAGFA-ANYLTGTMVCFFIGRFTGT 316 (438)
T ss_dssp S-TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHST---TCCHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred c-ccchhhhHHHHHhChHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhccC---CcchhHH-HHHHHHHHHHHHHHHHHHH
Confidence 2 22222333333333322211111000000000 0001111 1 11110 1245556 7888888999999999999
Q ss_pred HHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcccccccccccccCChhhhhhHHHHHHHHHHHH
Q 047673 281 ILADKLGRKVLFLLGGIQILVSQVMIGSVMATQL-VLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLF 359 (437)
Q Consensus 281 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~ 359 (437)
++.||+|||+.+..+.++..++.+++........ ....+...+. ....+....+..|.+|++ ++.+.++.. .+.++
T Consensus 317 ~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g 393 (438)
T 3o7q_A 317 WLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFM-SIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIG 393 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-HHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHH
Confidence 9999999999999988888887776666544432 2222222222 234455566767889977 888888777 77899
Q ss_pred HHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHH
Q 047673 360 TSLVAQTVLAMLYHFK-AGVFFFFGGWLIAMTTF 392 (437)
Q Consensus 360 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~ 392 (437)
+.++|.+.|.+.+..+ +...+.+.+++.+...+
T Consensus 394 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 394 GGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 9999999999999988 66555554444444333
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=254.90 Aligned_cols=365 Identities=13% Similarity=0.001 Sum_probs=247.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHh
Q 047673 3 VFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFA 82 (437)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 82 (437)
++++.....++++.+..+++....++.. |. ..+++ ++..+.|++.+++.++..++++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------------~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~ 82 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAM--PY------------------LVEQG-FSRGDLGFALSGISIAYGFSKFIM 82 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHH--HH------------------TTSST-TCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH------------------HHHHh-ccHhHHHHHHHHHHHHHHHHHHhH
Confidence 4567778888888888888887766442 22 24456 789999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHhh----ccccceeeeee------------cchhhhhhcc-cccccchHHHHHH
Q 047673 83 STVTRAFGRKASILVGGTTFLTSSAIGGA----ALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQV 145 (437)
Q Consensus 83 g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~ 145 (437)
|+++||+|||+++.++.++.+++.+++++ ++|++.++++| ...+++.|++ +++|++++++.+.
T Consensus 83 G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 162 (451)
T 1pw4_A 83 GSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNC 162 (451)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHH
Confidence 99999999999999999999999999999 99999999999 5678899999 8999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCcc-hHHHHHhhHHHHHHHH-HhhccCCCChhHHHhhCCCH---H-HHHH--H------
Q 047673 146 CVATGILSANLLNYGTQKIKGGWG-WRISLAMAVAPASILT-IGLLFLPETPSSIIQRNNDY---Q-KAEK--I------ 211 (437)
Q Consensus 146 ~~~~G~~~~~~~~~~l~~~~~~~~-wr~~f~~~~i~~~~~~-~~~~~l~esp~~~~~~~~~~---~-~~~~--~------ 211 (437)
+..+|.++++.+++.+.+.. | ||+.|++.++..++.. +..+++||+|+....++++. + +.+. .
T Consensus 163 ~~~~g~~~g~~~~~~l~~~~---g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (451)
T 1pw4_A 163 AHNVGGGIPPLLFLLGMAWF---NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELT 239 (451)
T ss_dssp HHHHHHTSHHHHHHHHHHHT---CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------C
T ss_pred HHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccc
Confidence 99999999999998876543 6 9999999887766544 44567888875422111100 0 0000 0
Q ss_pred -----HHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhccccccc--ccccchHHHHHHHHHHHHHHHHhhhHHHHhh
Q 047673 212 -----MQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQ--LLSESTSLLMSALVTGGIGTVSTILPMILAD 284 (437)
Q Consensus 212 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 284 (437)
.++..+++....... .... ...........+ +.+... -.+..+. +.......++.+++.++.+++.|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~-~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~g~l~~ 313 (451)
T 1pw4_A 240 AKQIFMQYVLPNKLLWYIAI--ANVF--VYLLRYGILDWS-PTYLKEVKHFALDKS-SWAYFLYEYAGIPGTLLCGWMSD 313 (451)
T ss_dssp CTHHHHHHTSSCHHHHHHHH--HHHH--HHHHHHHHHHHH-HHHBTTBSCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHcCHHHHHHHH--HHHH--HHHHHHHHHHHH-HHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000000 0000 000000000000 011111 1245556 78888889999999999999999
Q ss_pred hc--CchhHHHHhHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHH
Q 047673 285 KL--GRKVLFLLGGIQIL-VSQVMIGSVM--ATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLL 358 (437)
Q Consensus 285 ~~--g~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~ 358 (437)
|+ ++|+.+..+..+.. ++.+++.... .........+..+++. ...+....+..|.+|++.|+++.|+.+...++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 393 (451)
T 1pw4_A 314 KVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 393 (451)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence 99 99998877776665 5555444332 2222223333333332 23344456778999999999999999999999
Q ss_pred -HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhcc
Q 047673 359 -FTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFL 397 (437)
Q Consensus 359 -~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (437)
+..+++.+.+.+.+..++...+...+++.+.+.+..++.
T Consensus 394 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 394 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998886554444444444444433333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=226.81 Aligned_cols=342 Identities=12% Similarity=0.044 Sum_probs=216.8
Q ss_pred CcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhh-hchhHHHHHHHHHHHHHHHHHhhccccceeeeee-----------
Q 047673 55 NYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRA-FGRKASILVGGTTFLTSSAIGGAALDIYMLILGL----------- 122 (437)
Q Consensus 55 ~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r----------- 122 (437)
+|+|++..+.+++.+++.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 4469999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred -cchhhhhhcc-ccc--ccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccC-----CC
Q 047673 123 -NAPISLRNGT-PKH--IGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFL-----PE 193 (437)
Q Consensus 123 -~~~~~i~~~~-~~~--r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l-----~e 193 (437)
...+++.|++ +++ |+.+.++++.+.++|..++|.+++.+.+.. |||+.|++.++..++..+..++. ++
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 203 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA---GYHVAFSLAAIGMFIGLLVYYFGGKKTLDP 203 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 6678899999 888 777888899999999999999999987654 79999999876655544443321 11
Q ss_pred ChhHHHhhCCCHHHHHHHHHH----------------HhCCccHHH--HH-HHHH---------HHhhhhh----cccc-
Q 047673 194 TPSSIIQRNNDYQKAEKIMQI----------------VRGTADVQA--EL-DDLI---------RQSSVSK----NINH- 240 (437)
Q Consensus 194 sp~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~--~~-~~~~---------~~~~~~~----~~~~- 240 (437)
..+...++.+ .++.++..+. ..+..+... .. .... ....... ..+.
T Consensus 204 ~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (491)
T 4aps_A 204 HYLRPTDPLA-PEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV 282 (491)
T ss_dssp CCSCCSCCCS-HHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred cccCCCCccc-cchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 1100001111 2232222221 001100000 00 0000 0000000 0000
Q ss_pred -chhhhh----------c--c----ccccccc--ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHH-----HhH
Q 047673 241 -PFKKII----------D--R----KYRPQLL--SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFL-----LGG 296 (437)
Q Consensus 241 -~~~~~~----------~--~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~~ 296 (437)
....++ . . .+..... +.... +.......+..+++.++.+++.||++||+... .+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~ 361 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPV-SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGL 361 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCS-GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCH-HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHH
Confidence 000000 0 0 0000000 21233 55667778888889999999999999986544 666
Q ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 047673 297 IQILVSQVMIGSVM---------ATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQT 366 (437)
Q Consensus 297 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 366 (437)
.+.+++.+.+.... ............+.+. ...+....+..|.+|++.|+++.|+.+...+++..+++.+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~ 441 (491)
T 4aps_A 362 MFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQL 441 (491)
T ss_dssp HHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555543 1112222223333332 3355557788899999999999999999999999999999
Q ss_pred HHHHHHhcccchhhHHHHHHHHHHHHhhhccccCC
Q 047673 367 VLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETK 401 (437)
Q Consensus 367 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (437)
.+.+.+......+..++++..+..++.++..++.+
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 442 VTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp GGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776654445566666655665555555554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-28 Score=226.34 Aligned_cols=340 Identities=12% Similarity=0.068 Sum_probs=227.2
Q ss_pred HHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 047673 10 IVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAF 89 (437)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~ 89 (437)
+.++++.+..+++....++.. |.+.+++ |.++.+.+++.+.+.++..+++++.|+++||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~ 62 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAI--ADMARDL------------------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRV 62 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHTTS------------------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhhhh--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666777777777776553 5555554 88999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHH
Q 047673 90 GRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANL 156 (437)
Q Consensus 90 Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~ 156 (437)
|||+++..+.++.+++.++.++++|++.+++.| ...+++.|++ +++|++++++.+.+..+|..+++.
T Consensus 63 g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 142 (375)
T 2gfp_A 63 GRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPL 142 (375)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999999 5667889999 999999999999999999999999
Q ss_pred HHhhhhccCCCcchHHHHHhhHHHHHHHHH-hhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHHHHHHHhhhh
Q 047673 157 LNYGTQKIKGGWGWRISLAMAVAPASILTI-GLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDDLIRQSSVS 235 (437)
Q Consensus 157 ~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~-~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (437)
+++.+.+. .+||+.|++.++..++..+ ..+++||+++...++++..+..++..++ +............
T Consensus 143 ~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 211 (375)
T 2gfp_A 143 IGGLLDTM---WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGN--------SGFNCYLLMLIGG 211 (375)
T ss_dssp HHHHSSCH---HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCCCTTTCSTHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccccHHHHHHHHhcC--------cchHHHHHHHHHH
Confidence 99988754 3899999988877776655 5567888865321111100000000000 0000000000000
Q ss_pred hccccchhhhhccccccc--ccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHH-HHHHHH--HHHHHH
Q 047673 236 KNINHPFKKIIDRKYRPQ--LLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQ-ILVSQV--MIGSVM 310 (437)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~--~~~~~~ 310 (437)
......+. .+.+.+... -.+.... +.......++.+++.++.+++.||++++. ..+... ...+.. ......
T Consensus 212 ~~~~~~~~-~~~~~~~~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~ 287 (375)
T 2gfp_A 212 LAGIAAFE-ACSGVLMGAVLGLSSMTV-SILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFG 287 (375)
T ss_dssp HHHHHHHH-HHCSCSSHHHHHHHHHHH-HHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhc
Confidence 00000011 111111111 1144455 77888888999999999999999998732 222222 222222 222211
Q ss_pred --HHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHH
Q 047673 311 --ATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGW 385 (437)
Q Consensus 311 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 385 (437)
+...........+++. ...+....+..|..| +.|+++.|+.+...+++..+++.+.+.+.+..++...+...++
T Consensus 288 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 288 VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 2222222222222222 234555667788888 8899999999999999999999999998877666555554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=203.22 Aligned_cols=337 Identities=11% Similarity=0.003 Sum_probs=192.6
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHH---HHHhhcccc-ceeeeee-----------
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSS---AIGGAALDI-YMLILGL----------- 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~---~~~~~a~~~-~~l~~~r----------- 122 (437)
|+++.+.|++.+.+.++..++++++|+++||+|||+++.++..+++++. ....+++.. ..++..+
T Consensus 39 g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 118 (417)
T 2cfq_A 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118 (417)
T ss_dssp CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999998887775532 212222211 1122222
Q ss_pred -cchhhhhhcc-c--ccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCC-CChhH
Q 047673 123 -NAPISLRNGT-P--KHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLP-ETPSS 197 (437)
Q Consensus 123 -~~~~~i~~~~-~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~-esp~~ 197 (437)
.......++. + ++|+...+....+..+|..++|.+++.+.+ .+||+.|++.++..++..+..++.+ |+|+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 194 (417)
T 2cfq_A 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFAKTDAPSS 194 (417)
T ss_dssp HTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCS
T ss_pred hhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 1222333444 3 456777888887888899999999888764 2699999987766555555555544 43221
Q ss_pred HHhhC----CCHHHHHHHHHHHhCCccHHHHHHH-HHHHhhhhhccccchhhhhcccccccccccchHHHHHHHHHHHHH
Q 047673 198 IIQRN----NDYQKAEKIMQIVRGTADVQAELDD-LIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIG 272 (437)
Q Consensus 198 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (437)
..+++ ++.+...+...+..+++........ .......... ...+...+.........+.... +.......++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~ 272 (417)
T 2cfq_A 195 ATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVF-DQQFANFFTSFFATGEQGTRVF-GYVTTMGELLN 272 (417)
T ss_dssp SCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTSSSHHHHTHHH-HHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCChhHH-HHHHHHHHHHH
Confidence 00000 0000000011111111111000000 0000000000 0000001111110000112233 55666777788
Q ss_pred HHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHH
Q 047673 273 TVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSI 351 (437)
Q Consensus 273 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~ 351 (437)
+++.++.++++||+|||+.+..+..+.++..+.+....+...........+... ...+..+.+.+|.+|++.|+++.++
T Consensus 273 ~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 352 (417)
T 2cfq_A 273 ASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLV 352 (417)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 899999999999999999988888777776555543222221111111111111 1223335677899999999999999
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHhcccchh-hHHHHHHHHHHHHhhhccccC
Q 047673 352 T-VAVGLLFTSLVAQTVLAMLYHFKAGVF-FFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 352 ~-~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 400 (437)
. +..+.+++.++|.+.|.+.+..++... ...+++.++..++.+...+|+
T Consensus 353 ~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 353 CFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 5 778889999999999999988775444 344444444444444444443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-23 Score=199.39 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=113.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhhhhhhh-chhHHHHHHHHHHHHHHHHHhhcc-ccceeeeee------------cc
Q 047673 59 FDSQLLAAFTSSLYIAGLIASLFASTVTRAF-GRKASILVGGTTFLTSSAIGGAAL-DIYMLILGL------------NA 124 (437)
Q Consensus 59 ~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~a~-~~~~l~~~r------------~~ 124 (437)
++..+.|++.+++.++..++++++|+++||+ |||+++.++.++.+++.++.++++ +++.++++| ..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 8999999999999999999999999999999 999999999999999999999999 999999989 55
Q ss_pred hhhhhhcc-cccccchHHH---HHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhh
Q 047673 125 PISLRNGT-PKHIGGFNIG---FQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGL 188 (437)
Q Consensus 125 ~~~i~~~~-~~~r~~~~~~---~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~ 188 (437)
.+++.|++ +++|+++.+. ...+.++|.+++|.+++.+.+.. +||+.|++.++..++..+..
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF---GAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS---CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHHH
Confidence 67899999 9999877666 88999999999999998887543 89999999877766655443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=4.8e-11 Score=112.71 Aligned_cols=146 Identities=12% Similarity=0.074 Sum_probs=110.6
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhh-ccc
Q 047673 255 LSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGS----VMATQLVLICVYNAGFTF-LWW 329 (437)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~ 329 (437)
.+..+. +...+...++..++.++.|+++||+|||+++..+.++.+++.++..+ ..+.....+..+..+.+. ...
T Consensus 59 ~s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~ 137 (451)
T 1pw4_A 59 FSRGDL-GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW 137 (451)
T ss_dssp TCSSCH-HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTH
T ss_pred ccHhHH-HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhcc
Confidence 456667 89999999999999999999999999999999999999998888877 433333333333334333 344
Q ss_pred ccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhH-HHHHHHHHHHHhhhccccCC
Q 047673 330 PLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFK-AGVFFF-FGGWLIAMTTFVHFFLPETK 401 (437)
Q Consensus 330 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~-~~~~~~~~~~~~~~~~~~~~ 401 (437)
+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+..+ |...+. .++..++..++..+.+||++
T Consensus 138 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 138 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 5556778899999999999999999999999999999999888887 765444 44444444555555666543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.04 E-value=3e-10 Score=104.54 Aligned_cols=145 Identities=12% Similarity=0.068 Sum_probs=108.3
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFL-WWPLGWL 334 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 334 (437)
+..+. +...+...+...++.++.|+++||+|||+.+..+..+..++.+......+........+..+.+.+ ..+....
T Consensus 33 s~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~ 111 (375)
T 2gfp_A 33 REGAV-QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMART 111 (375)
T ss_dssp TTHHH-HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 34455 788899999999999999999999999999999999999988888777665544444444444433 4455567
Q ss_pred cccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHHHhhhccccCC
Q 047673 335 VPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFF-GGWLIAMTTFVHFFLPETK 401 (437)
Q Consensus 335 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~ 401 (437)
++.|.+|+++|+++.++.+....++..+++.+.+.+.+..+|...+.. ++...+..+...+..||++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 112 LPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 778999999999999999999999999999999988877676544443 3333333333445555543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=8e-10 Score=103.21 Aligned_cols=133 Identities=11% Similarity=0.063 Sum_probs=106.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhh
Q 047673 60 DSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPIS 127 (437)
Q Consensus 60 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~ 127 (437)
+..+.+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++.. ....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888899999999999999999999999999988888888887777766554443 34568
Q ss_pred hhhcc-cccccchHHH-HHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHh-hccCCCCh
Q 047673 128 LRNGT-PKHIGGFNIG-FQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIG-LLFLPETP 195 (437)
Q Consensus 128 i~~~~-~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~-~~~l~esp 195 (437)
+.|.+ ++.|+.+.+. ++.+..+|..++|.+++.+.+.. |++..|.+.++..++..+. ....||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~---g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS---HHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc---CcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 88999 8899999998 48888899999999999877543 7888888877776665554 44566654
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-09 Score=102.85 Aligned_cols=115 Identities=10% Similarity=-0.030 Sum_probs=91.9
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhh-ccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMI---GSVMATQLVLICVYNAGFTF-LWWPL 331 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~ 331 (437)
+..+. +.+.+...++..++.++.|+++||+|||+.+..+.++.+++.++. ....+.....+..+..+.+. ...+.
T Consensus 59 s~~~~-g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~ 137 (438)
T 3o7q_A 59 TNFQA-GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETA 137 (438)
T ss_dssp CSHHH-HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHH-HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhh
Confidence 45566 889999999999999999999999999999999999999888887 33333333333333333333 33445
Q ss_pred ccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047673 332 GWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAML 371 (437)
Q Consensus 332 ~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 371 (437)
...++.|.+|+++|+++.++.+....+|..+++.+.+.+.
T Consensus 138 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 138 ANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999999999999999888
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.96 E-value=5.1e-10 Score=106.91 Aligned_cols=135 Identities=15% Similarity=0.085 Sum_probs=101.3
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhh-cCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADK-LGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGW 333 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 333 (437)
+..+. +...+...++..++.++.|+++|| +|||+++..+.++.+++.++.....+.....+..+..+.+. ...+...
T Consensus 52 s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 130 (491)
T 4aps_A 52 TRATA-ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVS 130 (491)
T ss_dssp CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHH
Confidence 44555 888899999999999999999999 89999999999998888887766544333333333333333 2445556
Q ss_pred ccccccCChhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Q 047673 334 LVPSEIFPLEI--RSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTT 391 (437)
Q Consensus 334 ~~~~~~~p~~~--r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 391 (437)
.++.|.+|++. |+.+.++.+....+|..++|.+.+.+.+..+|...+...++..+.+.
T Consensus 131 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~ 190 (491)
T 4aps_A 131 TLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGL 190 (491)
T ss_dssp HHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 77789999988 77788888899999999999999999998887655444444333333
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.94 E-value=5.4e-09 Score=100.71 Aligned_cols=137 Identities=14% Similarity=0.009 Sum_probs=101.2
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhc-CchhHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhh-cccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKL-GRKVLFLLGGIQILVSQVMIGSVM-ATQLVLICVYNAGFTF-LWWPLG 332 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~ 332 (437)
+..+. +.......++..++.++.|+++||+ |||+.+..+.++.+++.++..... +........+..+.+. ...+..
T Consensus 52 s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 52 RGAVA-KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTH-HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 45566 8888899999999999999999999 999999999998888888777665 4443333333333333 344555
Q ss_pred cccccccCChhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHh
Q 047673 333 WLVPSEIFPLEIRSAGKSI---TVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFV 393 (437)
Q Consensus 333 ~~~~~~~~p~~~r~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 393 (437)
..++.|.+|++.|+++.+. .+....+|..++|.+.+.+.+..+|...+...++..+...+.
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 6778899999999776666 888899999999999999988878665444444444433333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-08 Score=97.18 Aligned_cols=139 Identities=13% Similarity=-0.013 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHH
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGS------------------VMATQLVLICVYNAG 323 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~ 323 (437)
+.+.+...++.++|+++.|+++||+|||+.+.++.++..++.++..+ ..+.....+.-+..+
T Consensus 58 g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G 137 (491)
T 4gc0_A 58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGG 137 (491)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHH
Confidence 67777888999999999999999999999999999998888877663 222223344444444
Q ss_pred hhhc-ccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cchhhHHHHHHHHHHHHhh
Q 047673 324 FTFL-WWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFK--------AGVFFFFGGWLIAMTTFVH 394 (437)
Q Consensus 324 ~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~~~~~~~~ 394 (437)
++.+ ..+....+++|..|++.|+...++.+.....|..+++.+........+ |........+..+...+..
T Consensus 138 ~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
T 4gc0_A 138 IGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLL 217 (491)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhh
Confidence 4433 345566788999999999999999888877777666655544443221 2233333333444444455
Q ss_pred hccccC
Q 047673 395 FFLPET 400 (437)
Q Consensus 395 ~~~~~~ 400 (437)
++.||.
T Consensus 218 ~~~peS 223 (491)
T 4gc0_A 218 YTVPES 223 (491)
T ss_dssp GGSCCC
T ss_pred hcCCCC
Confidence 566664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 437 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.94 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.22 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.97 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=6.6e-32 Score=253.89 Aligned_cols=369 Identities=14% Similarity=0.015 Sum_probs=232.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHh
Q 047673 3 VFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFA 82 (437)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 82 (437)
+++|.+...+.++.+..+++...++.+. | +.++ +|+|.+|.|++.+++.+++.++++++
T Consensus 21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~--p-~~~~------------------~g~s~~~~g~~~s~~~~~~~~~~~~~ 79 (447)
T d1pw4a_ 21 RLRWQIFLGIFFGYAAYYLVRKNFALAM--P-YLVE------------------QGFSRGDLGFALSGISIAYGFSKFIM 79 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHH--H-HTTS------------------STTCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHH------------------hCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888887766432 2 2222 38999999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHhhc----cccceeeeee------------cchhhhhhcc-cccccchHHHHHH
Q 047673 83 STVTRAFGRKASILVGGTTFLTSSAIGGAA----LDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQV 145 (437)
Q Consensus 83 g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a----~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~ 145 (437)
|+++||+|||+++.++.++.+++.++++++ ++++.+++.| ....++.|++ +++|++++++.+.
T Consensus 80 G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 159 (447)
T d1pw4a_ 80 GSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNC 159 (447)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhccccccccccc
Confidence 999999999999999999999999998876 4778888888 5567899999 9999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHH-HHhhccCCCChhHHHhhCCC---HHHHHHHHHHHhCCc-c
Q 047673 146 CVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASIL-TIGLLFLPETPSSIIQRNND---YQKAEKIMQIVRGTA-D 220 (437)
Q Consensus 146 ~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~-~~~~~~l~esp~~~~~~~~~---~~~~~~~~~~~~~~~-~ 220 (437)
+..+|.++++.++..+..... +||+.|++.++..++. ++.+++++|+|+.......+ .++.++..++.+++. .
T Consensus 160 ~~~~g~~i~~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (447)
T d1pw4a_ 160 AHNVGGGIPPLLFLLGMAWFN--DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTA 237 (447)
T ss_dssp HHHHHHTSHHHHHHHHHHHTC--CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CC
T ss_pred ccchhhhhhhhhhhhHhhhhh--cccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccch
Confidence 999999999998887665443 7999988877665554 44455566665432111110 000000000000000 0
Q ss_pred HHHHHHHH---------HHHhhhhhccccchhhhhcccccc--cccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCch
Q 047673 221 VQAELDDL---------IRQSSVSKNINHPFKKIIDRKYRP--QLLSESTSLLMSALVTGGIGTVSTILPMILADKLGRK 289 (437)
Q Consensus 221 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 289 (437)
.+...... ................ +...+.. .-.+.... +.......+..+++.++.+++.||++|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 315 (447)
T d1pw4a_ 238 KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILD-WSPTYLKEVKHFALDKS-SWAYFLYEYAGIPGTLLCGWMSDKVFRG 315 (447)
T ss_dssp THHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH-HHHHHBTTBSCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred hhHHHHHHHcCchHHHHHHHhhhhhhhhhcchh-hhhhhcccccccccchh-hhhhhcchhhhhhhhhhhhhhhhhcccc
Confidence 00000000 0000000000000000 0000111 11145566 7888888999999999999999999987
Q ss_pred hHHHHhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHHHH-HH
Q 047673 290 VLFLLGGIQILVSQVMIGSVM-----ATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFT-SL 362 (437)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~-~~ 362 (437)
+.................... +......+.+..+++. +..+....+..|.+|++.|+++.|+.+.++++++ .+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~ 395 (447)
T d1pw4a_ 316 NRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 395 (447)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 654433333322222222111 1112233333333332 3344556677899999999999999999988854 55
Q ss_pred HHHHHHHHHHhcccchhh-HHHHHHHHHHHHhhhc
Q 047673 363 VAQTVLAMLYHFKAGVFF-FFGGWLIAMTTFVHFF 396 (437)
Q Consensus 363 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 396 (437)
++.+.|.+.+..|+...+ ...++.++..++..++
T Consensus 396 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 396 ASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp HHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999998865443 3444334444444333
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=2.4e-25 Score=205.94 Aligned_cols=341 Identities=9% Similarity=-0.037 Sum_probs=212.3
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee---------------
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL--------------- 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r--------------- 122 (437)
|+|+.++|++.+++.++..++++++|+++||+||||+++++..+..++..+..+..+.......+
T Consensus 39 g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (417)
T d1pv7a_ 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118 (417)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccc
Confidence 89999999999999999999999999999999999999999999999888888776544322222
Q ss_pred -cchhhhhhcc---cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHh-hHHHHHHHHHhhccCCCChhH
Q 047673 123 -NAPISLRNGT---PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAM-AVAPASILTIGLLFLPETPSS 197 (437)
Q Consensus 123 -~~~~~i~~~~---~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~-~~i~~~~~~~~~~~l~esp~~ 197 (437)
.......+.. .+++.+..+........|..+++.+++.+... +|+..+.. .....+...+..+..+|+|+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (417)
T d1pv7a_ 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI----NNQFVFWLGSGCALILAVLLFFAKTDAPSS 194 (417)
T ss_dssp TTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHHSSCCCSCSS
T ss_pred cchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc----cccccccchhhHHHHHHHHHHHHhcccccc
Confidence 1111111222 23556677888888889999999999887754 45555544 445555555666667766532
Q ss_pred HHhhCC----CHHHHHHHHHHHhCCccHHHH-HHHHHHHhhhhhccccchhhhhcc-cccccccccchHHHHHHHHHHHH
Q 047673 198 IIQRNN----DYQKAEKIMQIVRGTADVQAE-LDDLIRQSSVSKNINHPFKKIIDR-KYRPQLLSESTSLLMSALVTGGI 271 (437)
Q Consensus 198 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 271 (437)
..++++ +.++......+.......... ............ .......... .......+.... ........++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 271 (417)
T d1pv7a_ 195 ATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDV--FDQQFANFFTSFFATGEQGTRVF-GYVTTMGELL 271 (417)
T ss_dssp SCSSHHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTSSSCHHHHHHHH-HHHHHHHHHH
T ss_pred hhhhhhhhhhcccccccccccccccccccchhhhhHHHHHHHHh--hhccccccccccccccccchhhh-cccccccccc
Confidence 110000 000000111111111100000 000000000000 0000000000 000111133344 6677777888
Q ss_pred HHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHH
Q 047673 272 GTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKS 350 (437)
Q Consensus 272 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g 350 (437)
..++..+.+++.||.++|+.+..+..+.+++.+.+....+...........+++. ...+....+..|.+|++.|+++.|
T Consensus 272 ~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (417)
T d1pv7a_ 272 NASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYL 351 (417)
T ss_dssp HHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHH
T ss_pred cccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHH
Confidence 9999999999999999999999999888888877776655543333333333332 234555667789999999999999
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHHhhhccccCCCCCH
Q 047673 351 ITV-AVGLLFTSLVAQTVLAMLYHFKAG-VFFFFGGWLIAMTTFVHFFLPETKNVPI 405 (437)
Q Consensus 351 ~~~-~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (437)
+.. ....++..++|.+.|.+.|+.|+. .+++.+++.++..++..+.+++++..+.
T Consensus 352 ~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 408 (417)
T d1pv7a_ 352 VCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccch
Confidence 865 456789999999999999998865 4555566556666666666666555554
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=3.4e-11 Score=111.17 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=105.9
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhh-cccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ----LVLICVYNAGFTF-LWWP 330 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~ 330 (437)
+..+. +++.+...++..++.++.|+++||+|||+.+..+.++.+++.++........ ...+..+..+.+. ...+
T Consensus 57 s~~~~-g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 135 (447)
T d1pw4a_ 57 SRGDL-GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWP 135 (447)
T ss_dssp CSSCH-HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHH
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 56677 8999999999999999999999999999999999999888888777654332 2233333333332 2334
Q ss_pred cccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cc-hhhHHHHHHHHHHHHhhhccccC
Q 047673 331 LGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFK-AG-VFFFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 331 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~-~~~~~~~~~~~~~~~~~~~~~~~ 400 (437)
....++.|.+|+++|++++++.+....+|..+++.+.+...+..+ |. .+++.+.+..+..++.+.+.+++
T Consensus 136 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 136 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT 207 (447)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence 455677899999999999999999999999999988887777654 44 34444455555555555555543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=2.4e-10 Score=103.71 Aligned_cols=133 Identities=11% Similarity=0.044 Sum_probs=110.7
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cch
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAP 125 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~ 125 (437)
+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++.. ...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 334 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 44677888889999999999999999999999999999999999999999999999887766655 566
Q ss_pred hhhhhcc-cccccchHHHH-HHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHh-hccCCC
Q 047673 126 ISLRNGT-PKHIGGFNIGF-QVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIG-LLFLPE 193 (437)
Q Consensus 126 ~~i~~~~-~~~r~~~~~~~-~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~-~~~l~e 193 (437)
+++.|.+ +++|+++.+.. +....+|..++|.+++.+.+.. ||+..|++.++..++..+. .+.+++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---GFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 7789999 89999999975 5677899999999999888654 7999998877666655444 344443
|