Citrus Sinensis ID: 047722

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MGSQLPNSPLNYNNVSINPDNNLQHAAAASALASMKGYTLINVPASRNQQLGTTASSSAAASAPRGAAGIPRPHGYPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETSNIDQNSNNQTT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccHHHHHcccEEccHHcccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgsqlpnsplnynnvsinpdnnLQHAAAASALASMKgytlinvpasrnqqlgttasssaaasaprgaagiprphgypykrctnyncntndtpmwrrgplgpktlcnacgIKYRKEEEKRKAKetetsnidqnsnnqtt
Flexible Loop (DISEMBL)
mgsqlpnsplnyNNVSINPDNNLQHAAAASALASMKGYTLINVPASRNQQLGTTASssaaasaprgaagiprphgypykRCTNYNCNTndtpmwrrgplgpKTLCNACGIKYRKEeekrkaketetsnidqnsnnqtt
Low Complexity Region (SEG)
MGSQLPNSPLNYNNVSINPDNNLQHaaaasalasMKGYTLINVPASRNQQLGTTasssaaasaPRGAAGIPRPHGYPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIkyrkeeekrkaketetSNIDQNSNNQTT
Disordered region (IsUnstruct)
***********************************KGYTLIN*******************************HGYPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKY**************************
Disordered Region (DISOPRED)
***********************************************************************************YNCNTNDTPMWRRGPLGPKTLCNACGIKY**************************
Disordered Region (DISEMBL)
MGSQLPNSPLNYNNVSINPDNNLQHAAAASALASMKGYTLINVPASRNQ******************AGIPRPHGYPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRK************************
Disordered Region (DISPRO)
*************N**INPDN*LQHAAAASALASMKGYT**NVP*********************************YKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRK************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSQLPNSPLNYNNVSINPDNNLQHAAAASALASMKGYTLINVPASRNQQLGTTASSSAAASAPRGAAGIPRPHGYPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETSNIDQNSNNQTT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
Q9LT45	208	GATA transcription factor	yes	no	0.673	0.447	0.505	1e-16
Q6QPM2	211	GATA transcription factor	no	no	0.340	0.222	0.530	4e-10
Q8LC79	295	GATA transcription factor	no	no	0.297	0.138	0.581	7e-10
Q9ZPX0	208	GATA transcription factor	no	no	0.333	0.221	0.530	8e-10
Q54NM5	640	GATA zinc finger domain-c	yes	no	0.246	0.053	0.676	2e-09
Q00858	457	Cutinase gene palindrome-	N/A	no	0.268	0.080	0.615	4e-09
P69781	331	GATA transcription factor	no	no	0.297	0.123	0.534	1e-08
Q9SV30	322	GATA transcription factor	no	no	0.260	0.111	0.552	2e-08
Q55GK0	952	GATA zinc finger domain-c	no	no	0.268	0.038	0.594	2e-08
Q8L4M6	269	GATA transcription factor	no	no	0.239	0.122	0.6	3e-08

>sp|Q9LT45|GAT29_ARATH GATA transcription factor 29 OS=Arabidopsis thaliana GN=GATA29 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 57/99 (57%), Gaps = 6/99 (6%)

Query: 38  YTLINVPASR---NQQLGTTASSSAAASAPRGAAGIPRPHGYP--YKRCTNYNCNTNDTP 92
           Y LI+VPA R   N     T S    A+  R         G     K+CTN NCN  +TP
Sbjct: 111 YVLIDVPARRARRNNSTVMTNSWKENATPKRIRGCGGFCGGRIEGMKKCTNMNCNALNTP 170

Query: 93  MWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETSNIDQ 131
           MWRRGPLGPK+LCNACGIK+RKEEE RKAK      +D 
Sbjct: 171 MWRRGPLGPKSLCNACGIKFRKEEE-RKAKRNVVIVLDD 208

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6QPM2|GAT19_ARATH GATA transcription factor 19 OS=Arabidopsis thaliana GN=GATA19 PE=2 SV=2

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 34/49 (69%), Gaps = 2/49 (4%)

Query: 79  KRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETS 127
           +RC N  C+T  TP+WR GP GPK+LCNACGI+++KEE +       TS
Sbjct: 75  RRCAN--CDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASTARNSTS 121

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC79|GAT18_ARATH GATA transcription factor 18 OS=Arabidopsis thaliana GN=GATA18 PE=2 SV=2

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 2/43 (4%)

Query: 79  KRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKA 121
           +RC N  C+T  TP+WR GP GPK+LCNACGI+++KEE +  A
Sbjct: 152 RRCAN--CDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRTTA 192

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPX0|GAT20_ARATH GATA transcription factor 20 OS=Arabidopsis thaliana GN=GATA20 PE=2 SV=2

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 36/49 (73%), Gaps = 3/49 (6%)

Query: 74  HGYPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAK 122
           H  P +RC +  C+T  TP+WR GP GPK+LCNACGI+++KEE +  A+
Sbjct: 88  HSLP-RRCAS--CDTTSTPLWRNGPKGPKSLCNACGIRFKKEERRATAR 133

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54NM5|GTAL_DICDI GATA zinc finger domain-containing protein 12 OS=Dictyostelium discoideum GN=gtaL PE=4 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 29/34 (85%)

Query: 85  NCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEK 118
           NC T+DTP WRRGP G KTLCNACGI+YR ++++
Sbjct: 508 NCKTSDTPEWRRGPQGAKTLCNACGIRYRLQQQQ 541

Dictyostelium discoideum (taxid: 44689)

>sp|Q00858|CGPB_FUSSO Cutinase gene palindrome-binding protein OS=Fusarium solani subsp. pisi PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 32/39 (82%), Gaps = 2/39 (5%)

Query: 81  CTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKR 119
           CT+  C T D+P WR+GP GPKTLCNACG+++ K+E+KR
Sbjct: 402 CTD--CGTLDSPEWRKGPSGPKTLCNACGLRWAKKEKKR 438

Binds a palindromic promoter element essential for induction of fungal cutinase gene.

Fusarium solani subsp. pisi (taxid: 70791)

>sp|P69781|GAT12_ARATH GATA transcription factor 12 OS=Arabidopsis thaliana GN=GATA12 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 30/43 (69%), Gaps = 2/43 (4%)

Query: 71  PRPHGYPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYR 113
           P   G   +RC   +C T+ TP WR GP+GPKTLCNACG++Y+
Sbjct: 211 PESGGAEERRC--LHCATDKTPQWRTGPMGPKTLCNACGVRYK 251

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV30|GATA8_ARATH GATA transcription factor 8 OS=Arabidopsis thaliana GN=GATA8 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 28/38 (73%), Gaps = 2/38 (5%)

Query: 76  YPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYR 113
           YP ++C +  C    TP WR GP+GPKTLCNACG++Y+
Sbjct: 226 YPLRKCMH--CEVTKTPQWRLGPMGPKTLCNACGVRYK 261

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q55GK0|GTAE_DICDI GATA zinc finger domain-containing protein 5 OS=Dictyostelium discoideum GN=gtaE PE=4 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 29/37 (78%)

Query: 84  YNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRK 120
           Y CNT++TP WR+GP GP TLCNACG+ Y K+++  K
Sbjct: 242 YQCNTSNTPEWRKGPEGPATLCNACGLAYAKKQKLTK 278

Dictyostelium discoideum (taxid: 44689)

>sp|Q8L4M6|GATA3_ARATH GATA transcription factor 3 OS=Arabidopsis thaliana GN=GATA3 PE=2 SV=2

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 21/35 (60%), Positives = 30/35 (85%), Gaps = 2/35 (5%)

Query: 79  KRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYR 113
           +RC++  C TN+TP WR GP+GPKTLCNACG++++
Sbjct: 180 RRCSH--CGTNNTPQWRTGPVGPKTLCNACGVRFK 212

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
255574434	161	conserved hypothetical protein [Ricinus	0.695	0.596	0.536	4e-20
109676364	1238	unknown [Populus trichocarpa]	0.333	0.037	0.782	6e-17
297830770	213	predicted protein [Arabidopsis lyrata su	0.666	0.431	0.520	2e-16
449448980	240	PREDICTED: GATA transcription factor 29-	0.644	0.370	0.516	6e-16
15232346	208	GATA transcription factor 29 [Arabidopsi	0.673	0.447	0.505	9e-15
224073208	226	predicted protein [Populus trichocarpa]	0.615	0.376	0.451	3e-12
413948588	243	hypothetical protein ZEAMMB73_192746 [Ze	0.362	0.205	0.547	5e-09
297798242	213	zinc finger family protein [Arabidopsis	0.340	0.220	0.551	1e-08
449457634	226	PREDICTED: GATA transcription factor 18-	0.376	0.230	0.5	2e-08
452844631	534	hypothetical protein DOTSEDRAFT_70543 [D	0.318	0.082	0.545	3e-08

>gi|255574434|ref|XP_002528130.1| conserved hypothetical protein [Ricinus communis] gi|223532469|gb|EEF34260.1| conserved hypothetical protein [Ricinus communis]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 61/97 (62%), Gaps = 1/97 (1%)

Query: 32  LASMKGYTLINVPASRNQQL-GTTASSSAAASAPRGAAGIPRPHGYPYKRCTNYNCNTND 90
           + +M  YTL++    R   +     SSS               +  P KRCTNYNCNTND
Sbjct: 61  IHTMNDYTLLDSTPRRVAHMEDVGGSSSINFRRRDSRRQRAGSYNDPTKRCTNYNCNTND 120

Query: 91  TPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETS 127
           TPMWR+GPLGPKTLCNACGIKYRKE EKR+AKE  +S
Sbjct: 121 TPMWRKGPLGPKTLCNACGIKYRKEVEKRRAKEAASS 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|109676364|gb|ABG37664.1| unknown [Populus trichocarpa]

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 43/46 (93%)

Query: 77   PYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAK 122
            PY+RCTN NCNT +TPMWR GPLGPK+LCNACGIKY+KEE++RKA+
Sbjct: 1184 PYRRCTNLNCNTRNTPMWRSGPLGPKSLCNACGIKYKKEEDRRKAR 1229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830770|ref|XP_002883267.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329107|gb|EFH59526.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/98 (52%), Positives = 61/98 (62%), Gaps = 6/98 (6%)

Query: 38  YTLINVPASR-----NQQLGTTASSSAAASAPRGAAGIPRPHGYPYKRCTNYNCNTNDTP 92
           Y LI+VPA R     +Q +  T + +A A   RG  G         K+CTN NCN  +TP
Sbjct: 116 YVLIDVPARRVRRNNSQTMANTWNENATAKRLRGCGGSCGGRIEGMKKCTNMNCNALNTP 175

Query: 93  MWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETSNID 130
           MWRRGPLGPK+LCNACGIK+RKEEE RKAK      +D
Sbjct: 176 MWRRGPLGPKSLCNACGIKFRKEEE-RKAKRNGVIELD 212

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448980|ref|XP_004142243.1| PREDICTED: GATA transcription factor 29-like [Cucumis sativus] gi|449503487|ref|XP_004162027.1| PREDICTED: GATA transcription factor 29-like [Cucumis sativus]

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 57/91 (62%), Gaps = 2/91 (2%)

Query: 38  YTLINVPASRNQQLGTTASSSAAASAPRGAAGIPRPHGYPYKRCTNYNCNTNDTPMWRRG 97
           YTL+N PASR        +SSA          +   +    +RCTNYNCNTN TPMWR+G
Sbjct: 151 YTLLN-PASRVADDHEAEASSAGRRKGSRRRRVSATNDVE-RRCTNYNCNTNFTPMWRKG 208

Query: 98  PLGPKTLCNACGIKYRKEEEKRKAKETETSN 128
           PLGPK+LCNACGI+YRKE   ++A   E SN
Sbjct: 209 PLGPKSLCNACGIRYRKETMNKEAMAAENSN 239

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232346|ref|NP_188711.1| GATA transcription factor 29 [Arabidopsis thaliana] gi|71660799|sp|Q9LT45.1|GAT29_ARATH RecName: Full=GATA transcription factor 29 gi|9294402|dbj|BAB02483.1| unnamed protein product [Arabidopsis thaliana] gi|225898665|dbj|BAH30463.1| hypothetical protein [Arabidopsis thaliana] gi|332642898|gb|AEE76419.1| GATA transcription factor 29 [Arabidopsis thaliana]

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 57/99 (57%), Gaps = 6/99 (6%)

Query: 38  YTLINVPASR---NQQLGTTASSSAAASAPRGAAGIPRPHGYP--YKRCTNYNCNTNDTP 92
           Y LI+VPA R   N     T S    A+  R         G     K+CTN NCN  +TP
Sbjct: 111 YVLIDVPARRARRNNSTVMTNSWKENATPKRIRGCGGFCGGRIEGMKKCTNMNCNALNTP 170

Query: 93  MWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETSNIDQ 131
           MWRRGPLGPK+LCNACGIK+RKEEE RKAK      +D 
Sbjct: 171 MWRRGPLGPKSLCNACGIKFRKEEE-RKAKRNVVIVLDD 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073208|ref|XP_002304024.1| predicted protein [Populus trichocarpa] gi|222841456|gb|EEE79003.1| predicted protein [Populus trichocarpa]

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 59/104 (56%), Gaps = 19/104 (18%)

Query: 9   PLNYNNVSINPDNNLQHAAAASALASMKGYTLINVPASRNQQLGTTASSSAAASAPRGAA 68
           P +Y+ ++ NP N          + +M G TL+N  A R+   G   SSS          
Sbjct: 123 PKSYSCINSNPGN--------FQIPTMNGRTLLNTVA-RDGDHGEVGSSS---------- 163

Query: 69  GIPRPHGYPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKY 112
           G  R      KRC+N +CNT+DTPMWR+GPLGPKTLCNACGIKY
Sbjct: 164 GSRRTFIDHNKRCSNRSCNTDDTPMWRKGPLGPKTLCNACGIKY 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413948588|gb|AFW81237.1| hypothetical protein ZEAMMB73_192746 [Zea mays]

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 39/53 (73%), Gaps = 3/53 (5%)

Query: 80  RCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETSNIDQN 132
           RC +  C T  TP+WR GP GPK+LCNACGI++RK +E+R A  T T+++DQ 
Sbjct: 129 RCAS--CGTTSTPLWRNGPRGPKSLCNACGIRFRK-KERRAATGTTTADMDQG 178

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798242|ref|XP_002867005.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297312841|gb|EFH43264.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 35/49 (71%), Gaps = 2/49 (4%)

Query: 79  KRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETS 127
           +RCTN  C+T  TP+WR GP GPK+LCNACGI+++KEE +       TS
Sbjct: 75  RRCTN--CDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASTAGNSTS 121

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457634|ref|XP_004146553.1| PREDICTED: GATA transcription factor 18-like [Cucumis sativus] gi|449529098|ref|XP_004171538.1| PREDICTED: GATA transcription factor 18-like [Cucumis sativus]

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 2/54 (3%)

Query: 79  KRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETSNIDQN 132
           +RC N  C+T  TP+WR GP GPK+LCNACGI+++KEE +  A    +S  + N
Sbjct: 100 RRCAN--CDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRAAAATVNSSVAESN 151

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|452844631|gb|EME46565.1| hypothetical protein DOTSEDRAFT_70543 [Dothistroma septosporum NZE10]

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 34/44 (77%)

Query: 85  NCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETSN 128
           +C T D+P WR+GP GPKTLCNACG+++ K+E+KR   + + SN
Sbjct: 452 DCGTLDSPEWRKGPKGPKTLCNACGLRWAKKEKKRSGDDIKMSN 495

Source: Dothistroma septosporum NZE10

Species: Mycosphaerella pini

Genus: Mycosphaerella

Family: Mycosphaerellaceae

Order: Capnodiales

Class: Dothideomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
TAIR|locus:2091886	208	GATA29 "GATA transcription fac	0.528	0.350	0.487	1e-13
DICTYBASE|DDB_G0285139	640	gtaL "GATA zinc finger domain-	0.188	0.040	0.807	3.3e-09
ASPGD|ASPL0000039361	461	nsdD [Emericella nidulans (tax	0.231	0.069	0.588	4.1e-09
DICTYBASE|DDB_G0281661	536	gtaI "GATA zinc finger domain-	0.188	0.048	0.692	1.2e-08
TAIR|locus:2115195	211	GATA19 "GATA transcription fac	0.253	0.165	0.594	1.3e-08
TAIR|locus:2139594	269	GATA3 "GATA transcription fact	0.217	0.111	0.656	1.6e-08
TAIR|locus:2062095	208	GATA20 "GATA transcription fac	0.246	0.163	0.594	2.1e-08
DICTYBASE|DDB_G0270756	1006	gtaG "GATA zinc finger domain-	0.195	0.026	0.703	5.4e-08
DICTYBASE|DDB_G0277589	587	gtaC "GATA zinc finger domain-	0.384	0.090	0.415	6.2e-08
TAIR|locus:2103346	240	GATA4 "GATA transcription fact	0.217	0.125	0.656	6.8e-08

TAIR|locus:2091886 GATA29 "GATA transcription factor 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 38/78 (48%), Positives = 45/78 (57%)

Query:    38 YTLINVPASRNQQLGTTXXXXX--XXXXP---RGAAGIPRPHGYPYKRCTNYNCNTNDTP 92
             Y LI+VPA R ++  +T           P   RG  G         K+CTN NCN  +TP
Sbjct:   111 YVLIDVPARRARRNNSTVMTNSWKENATPKRIRGCGGFCGGRIEGMKKCTNMNCNALNTP 170

Query:    93 MWRRGPLGPKTLCNACGI 110
             MWRRGPLGPK+LCNACGI
Sbjct:   171 MWRRGPLGPKSLCNACGI 188

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

DICTYBASE|DDB_G0285139 gtaL "GATA zinc finger domain-containing protein 12" [Dictyostelium discoideum (taxid:44689)]

 Score = 126 (49.4 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
 Identities = 21/26 (80%), Positives = 22/26 (84%)

Query:    85 NCNTNDTPMWRRGPLGPKTLCNACGI 110
             NC T+DTP WRRGP G KTLCNACGI
Sbjct:   508 NCKTSDTPEWRRGPQGAKTLCNACGI 533

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ASPGD|ASPL0000039361 nsdD [Emericella nidulans (taxid:162425)]

 Score = 114 (45.2 bits), Expect = 4.1e-09, Sum P(3) = 4.1e-09
 Identities = 20/34 (58%), Positives = 25/34 (73%)

Query:    77 PYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGI 110
             P  RC  ++CN  +TP WRRGP G +TLCNACG+
Sbjct:   396 PPGRC--HSCNRAETPEWRRGPDGARTLCNACGL 427

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0043941 "positive regulation of sexual sporulation resulting in formation of a cellular spore" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0031505 "fungal-type cell wall organization" evidence=IEA

GO:0007618 "mating" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

DICTYBASE|DDB_G0281661 gtaI "GATA zinc finger domain-containing protein 9" [Dictyostelium discoideum (taxid:44689)]

 Score = 111 (44.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query:    85 NCNTNDTPMWRRGPLGPKTLCNACGI 110
             +C T DTP WRRGP G K+LCNACG+
Sbjct:   481 HCGTTDTPEWRRGPDGRKSLCNACGL 506

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2115195 GATA19 "GATA transcription factor 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 22/37 (59%), Positives = 26/37 (70%)

Query:    74 HGYPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGI 110
             H    +RC N  C+T  TP+WR GP GPK+LCNACGI
Sbjct:    70 HNLLARRCAN--CDTTSTPLWRNGPRGPKSLCNACGI 104

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2139594 GATA3 "GATA transcription factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 21/32 (65%), Positives = 27/32 (84%)

Query:    79 KRCTNYNCNTNDTPMWRRGPLGPKTLCNACGI 110
             +RC++  C TN+TP WR GP+GPKTLCNACG+
Sbjct:   180 RRCSH--CGTNNTPQWRTGPVGPKTLCNACGV 209

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2062095 GATA20 "GATA transcription factor 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 22/37 (59%), Positives = 27/37 (72%)

Query:    74 HGYPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGI 110
             H  P +RC +  C+T  TP+WR GP GPK+LCNACGI
Sbjct:    88 HSLP-RRCAS--CDTTSTPLWRNGPKGPKSLCNACGI 121

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

DICTYBASE|DDB_G0270756 gtaG "GATA zinc finger domain-containing protein 7" [Dictyostelium discoideum (taxid:44689)]

 Score = 122 (48.0 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
 Identities = 19/27 (70%), Positives = 22/27 (81%)

Query:    84 YNCNTNDTPMWRRGPLGPKTLCNACGI 110
             +NC T +TP WRRGP GP TLCNACG+
Sbjct:   843 HNCGTKNTPEWRRGPSGPATLCNACGL 869

GO:0030587 "sorocarp development" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

DICTYBASE|DDB_G0277589 gtaC "GATA zinc finger domain-containing protein 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 111 (44.1 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
 Identities = 22/53 (41%), Positives = 26/53 (49%)

Query:    86 CNTNDTPMWRRGPLGPKTLCNACGIXXXXXXXXXXXXXXXXSNIDQNSNNQTT 138
             C T +TP WR+GP G KTLCNACG+                 N  QN+   TT
Sbjct:   503 CGTMETPEWRKGPGGHKTLCNACGLHYAKNIKKENQNNGGSPNPQQNNVTTTT 555

GO:0005634 "nucleus" evidence=IDA

GO:0031149 "sorocarp stalk cell differentiation" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2103346 GATA4 "GATA transcription factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query:    79 KRCTNYNCNTNDTPMWRRGPLGPKTLCNACGI 110
             +RCT+  C +  TP WR GPLGPKTLCNACG+
Sbjct:   158 RRCTH--CASEKTPQWRTGPLGPKTLCNACGV 187

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Al_scaffold_0003_2224 annotation not avaliable (213 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	138
pfam00320	36	pfam00320, GATA, GATA zinc finger	3e-13
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	1e-12
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	3e-10

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 59.2 bits (144), Expect = 3e-13
 Identities = 21/30 (70%), Positives = 24/30 (80%)

Query: 85  NCNTNDTPMWRRGPLGPKTLCNACGIKYRK 114
           NC T  TP+WRRGP G +TLCNACG+ YRK
Sbjct: 3   NCGTTKTPLWRRGPDGNRTLCNACGLYYRK 32

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 58.2 bits (141), Expect = 1e-12
 Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 79  KRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETS 127
           + C+N  C T +TP+WRRGP G KTLCNACG+ Y+K    ++    +  
Sbjct: 4   RSCSN--CGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLSLKKD 50

Length = 52

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 52.0 bits (125), Expect = 3e-10
 Identities = 21/50 (42%), Positives = 29/50 (58%)

Query: 85  NCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETSNIDQNSN 134
           NC T  TP+WRRGP G  TLCNACG+ ++K    R   + +   I + + 
Sbjct: 4   NCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRKKDQIKRRNR 53

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.66
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.6
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.57
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	98.84
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.41
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	85.29

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.66  E-value=5.7e-17  Score=105.76  Aligned_cols=51  Identities=43%  Similarity=0.959  Sum_probs=43.5

Q ss_pred             cccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhcccchhhhhccccccc
Q 047722           80 RCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETSNIDQN  132 (138)
Q Consensus        80 ~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~~r~~~~~~~~~~~~~  132 (138)
                      .|+  +|++++||+||+||.+...|||||||||++++..|+........+..+
T Consensus         1 ~C~--~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~~~rp~~~~~~~~~~~~   51 (54)
T cd00202           1 ACS--NCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRKKDQIKRR   51 (54)
T ss_pred             CCC--CCCCCCCcccccCCCCcchHHHHHHHHHHhcCCCCCcccCcccccccc
Confidence            488  999999999999998889999999999999999888877664444433

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.60  E-value=4.1e-16  Score=100.79  Aligned_cols=44  Identities=52%  Similarity=1.114  Sum_probs=39.1

Q ss_pred             CCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhcc-cchh
Q 047722           77 PYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEK-RKAK  122 (138)
Q Consensus        77 ~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~~-r~~~  122 (138)
                      ....|+  +|++++||+||+||.|...|||||||||+++..+ |+..
T Consensus         2 ~~~~C~--~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~~rp~~   46 (52)
T smart00401        2 SGRSCS--NCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLS   46 (52)
T ss_pred             CCCCcC--CCCCCCCCccccCCCCCCcEeecccHHHHHcCCCCCccc
Confidence            356799  9999999999999999889999999999999987 4443

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.57  E-value=5.8e-16  Score=93.29  Aligned_cols=35  Identities=60%  Similarity=1.342  Sum_probs=28.5

Q ss_pred             ccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhc
Q 047722           81 CTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEE  117 (138)
Q Consensus        81 C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~  117 (138)
                      |+  +|++++||+||+||.|..+|||||||+|+++++
T Consensus         1 C~--~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~~   35 (36)
T PF00320_consen    1 CS--NCGTTETPQWRRGPNGNRTLCNACGLYYKKYGK   35 (36)
T ss_dssp             -T--TT--ST-SSEEEETTSEE-EEHHHHHHHHHHSS
T ss_pred             Cc--CCcCCCCchhhcCCCCCCHHHHHHHHHHHHhCC
Confidence            67  999999999999999988899999999999976

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=98.84  E-value=1.4e-09  Score=83.44  Aligned_cols=50  Identities=46%  Similarity=1.090  Sum_probs=41.0

Q ss_pred             CccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhcccchhhhhccccc
Q 047722           78 YKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETSNID  130 (138)
Q Consensus        78 ~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~~r~~~~~~~~~~~  130 (138)
                      ...|.  +|+++.||+||+++.|++.+||||||+|+++. .++........+.
T Consensus       199 ~~~c~--~~~~~~t~~~r~~~~g~~~~cnacgl~~k~~~-~~r~~~~~~~~~~  248 (340)
T KOG1601|consen  199 LRQCS--NCGTTKTPLWRRGPEGPKSLCNACGLRYKKGG-VRRPLPEKRPASS  248 (340)
T ss_pred             CcccC--CCCCCCCcceecCCCCCccccccchhhhhhcC-ccccccccCcccc
Confidence            47898  99999999999999999999999999999998 3444444444333

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.41  E-value=2.1e-07  Score=83.50  Aligned_cols=40  Identities=43%  Similarity=0.967  Sum_probs=37.0

Q ss_pred             CCccccCCCCCCCCCCccccCCC-----CCcchhhHHHHHHHhhhccc
Q 047722           77 PYKRCTNYNCNTNDTPMWRRGPL-----GPKTLCNACGIKYRKEEEKR  119 (138)
Q Consensus        77 ~~~~C~~~~C~t~~TP~WRrGp~-----G~~~LCNACGL~~~k~~~~r  119 (138)
                      ...+|.  +|.++.||+|||+..     | -.|||||||+|+-|+..|
T Consensus       157 ~~~vc~--Nc~t~stPlwrR~~~~~s~~~-n~lcnaCgl~~klhg~~r  201 (498)
T COG5641         157 QPHVCS--NCKTTSTPLWRRASSESSLPG-NNLCNACGLYLKLHGSPR  201 (498)
T ss_pred             ccchhc--cccccCCccccccccccccCC-ccccccccccccccCCcC
Confidence            445899  999999999999999     6 899999999999999988

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=85.29  E-value=0.3  Score=44.46  Aligned_cols=43  Identities=30%  Similarity=0.474  Sum_probs=34.9

Q ss_pred             ccccCCCCCC-CCCCccccCCCCCcchhhHHHHHHHhhhcccchhh
Q 047722           79 KRCTNYNCNT-NDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKE  123 (138)
Q Consensus        79 ~~C~~~~C~t-~~TP~WRrGp~G~~~LCNACGL~~~k~~~~r~~~~  123 (138)
                      ..|.  +|.+ +.||.||+...---++|||||++.+..+.+++...
T Consensus       298 ~~~s--~~~~~~~tp~~~r~~~~~s~~~n~~~~~~~~~~~~~p~~p  341 (498)
T COG5641         298 KKRS--TLTTSTATPLWRRTSDKSSFSCNASGSALKPPGSKRPLLP  341 (498)
T ss_pred             cCcc--cccccccCcccccccccccccccccccccCCcccccccCC
Confidence            4466  5554 67899988876668999999999999999888766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	138
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	2e-12
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	4e-10
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	4e-09
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	8e-07
3dfx_A	63	Trans-acting T-cell-specific transcription factor	1e-06

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 57.6 bits (139), Expect = 2e-12
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 79  KRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETSNIDQNSNNQTT 138
            +C+N  C+  +T  WR         CNAC I  RK  + R           +    +T 
Sbjct: 9   FQCSN--CSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNKYQKRKLKVQETN 66

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 50.9 bits (122), Expect = 4e-10
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 79  KRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKR 119
           + C N  C    TP+WRR   G   LCNACG+ ++   + R
Sbjct: 5   RECVN--CGATATPLWRRDRTG-HYLCNACGLYHKMNGQNR 42

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 48.2 bits (115), Expect = 4e-09
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 84  YNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKR 119
            NC T  TP+WRR P G + LCNACG+  +     R
Sbjct: 5   TNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHGVVR 39

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 43.1 bits (101), Expect = 8e-07
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 84  YNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKR 119
            NC T  TP+WRR P G + LCNACG+  +     R
Sbjct: 13  TNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHGVVR 47

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 42.7 bits (100), Expect = 1e-06
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 84  YNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKR 119
            NC T  T +WRR   G   +CNACG+ Y+     R
Sbjct: 11  ANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNINR 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	138
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.78
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.74
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.74
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.74
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.69
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.65
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.46

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.78  E-value=1.9e-19  Score=120.20  Aligned_cols=56  Identities=30%  Similarity=0.686  Sum_probs=47.3

Q ss_pred             CCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhcccchhhhhcccccccccCC
Q 047722           77 PYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETSNIDQNSNNQ  136 (138)
Q Consensus        77 ~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~~r~~~~~~~~~~~~~~~~~  136 (138)
                      ....|+  +|++++||+||+||+|+ +|||||||+|+++++.|++.. ....|+.|+|+-
T Consensus         6 ~~~~C~--~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~-~~~~i~~R~Rk~   61 (63)
T 3dfx_A            6 AGTSCA--NCQTTTTTLWRRNANGD-PVCNACGLYYKLHNINRPLTM-KKEGIQTRNRKM   61 (63)
T ss_dssp             TTCCCT--TTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGG-CCSSCCCCC---
T ss_pred             CCCcCC--CcCCCCCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCc-CCCccccccCCC
Confidence            446799  99999999999999996 999999999999999888775 567799998864

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.74  E-value=6.9e-19  Score=110.92  Aligned_cols=43  Identities=37%  Similarity=0.848  Sum_probs=39.4

Q ss_pred             CCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhcccchh
Q 047722           77 PYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAK  122 (138)
Q Consensus        77 ~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~~r~~~  122 (138)
                      ..+.|+  +|++++||+||+||+|+ +|||||||||+++++.|++.
T Consensus         3 ~~~~C~--~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~   45 (46)
T 1gnf_A            3 EARECV--NCGATATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLI   45 (46)
T ss_dssp             CSCCCT--TTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCC
T ss_pred             CCCCCC--CcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCCCCCC
Confidence            456799  99999999999999995 99999999999999988864

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.74  E-value=5.3e-19  Score=110.00  Aligned_cols=41  Identities=46%  Similarity=0.946  Sum_probs=37.9

Q ss_pred             ccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhcccchh
Q 047722           79 KRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAK  122 (138)
Q Consensus        79 ~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~~r~~~  122 (138)
                      +.|+  +|++++||+||+||+|+ +|||||||+|+++++.|+..
T Consensus         2 ~~C~--~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~   42 (43)
T 2vut_I            2 TTCT--NCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLS   42 (43)
T ss_dssp             CCCS--SSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSCCCCC
T ss_pred             CcCC--ccCCCCCCccccCCCCC-cccHHHHHHHHHhCCCCCCC
Confidence            5699  99999999999999996 99999999999999988764

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.74  E-value=6.8e-19  Score=118.39  Aligned_cols=56  Identities=39%  Similarity=0.719  Sum_probs=48.7

Q ss_pred             CCCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhcccchhhhhcccccccccC
Q 047722           76 YPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETSNIDQNSNN  135 (138)
Q Consensus        76 ~~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~~r~~~~~~~~~~~~~~~~  135 (138)
                      .....|+  +|++++||+||+||+|. +|||||||||+++++.|+... +...|+.++|+
T Consensus         7 ~~~~~C~--~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~-k~~~ik~R~R~   62 (66)
T 4gat_A            7 NGPTTCT--NCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSL-KTDVIKKRNRN   62 (66)
T ss_dssp             SSSCCCT--TTCCCCCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGG-CCSCCCCCCCS
T ss_pred             CCCCCCC--CCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhh-ccccccccccC
Confidence            3567899  99999999999999995 999999999999999888776 55677777765

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.69  E-value=1e-17  Score=114.16  Aligned_cols=51  Identities=27%  Similarity=0.435  Sum_probs=41.4

Q ss_pred             CCCCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhcccchhhhhcc
Q 047722           75 GYPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETS  127 (138)
Q Consensus        75 ~~~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~~r~~~~~~~~  127 (138)
                      ......|+  +|++++||+||+|+.+..+|||||||||+++++.|++......
T Consensus         5 ~~~~~~C~--nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~~~   55 (71)
T 2kae_A            5 NKKSFQCS--NCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNKY   55 (71)
T ss_dssp             ---CCCCS--SSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHHHH
T ss_pred             CCCCCcCC--ccCCCCCCccccCCCCCCccchHHHHHHHHhCCCCCcccchhh
Confidence            34567899  9999999999995444449999999999999999998877653

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.65  E-value=1.1e-16  Score=117.45  Aligned_cols=56  Identities=30%  Similarity=0.682  Sum_probs=48.1

Q ss_pred             CCCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhcccchhhhhcccccccccC
Q 047722           76 YPYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETSNIDQNSNN  135 (138)
Q Consensus        76 ~~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~~r~~~~~~~~~~~~~~~~  135 (138)
                      .....|+  +|++++||+||+||+| .+|||||||||++|++.|++... ...|+.|+++
T Consensus        57 ~~~~~C~--~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~-~~~i~~r~r~  112 (115)
T 4hc9_A           57 RAGTSCA--NCQTTTTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMK-KEGIQTRNRK  112 (115)
T ss_dssp             CTTCCCT--TTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGC-CSSCCCCC--
T ss_pred             cccccCC--CcCCCCcceeEECCCC-CCcchHHHHHHHHhCCCCCcccc-ccchhhcccc
Confidence            3457899  9999999999999999 99999999999999998887664 5678888875

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.46  E-value=1.8e-14  Score=105.63  Aligned_cols=48  Identities=33%  Similarity=0.761  Sum_probs=41.3

Q ss_pred             CCccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhcccchhhhhcc
Q 047722           77 PYKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETS  127 (138)
Q Consensus        77 ~~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~~r~~~~~~~~  127 (138)
                      ..+.|+  +|++++||+||+|+.| .+|||||||||+.+++.|+..+.+..
T Consensus         4 ~~~~C~--~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpKKR   51 (115)
T 4hc9_A            4 MGRECV--NCGATSTPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPKRR   51 (115)
T ss_dssp             --CCCT--TTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCCCC
T ss_pred             CCCCCC--CCCCccCCcceECCCC-CCcCcchhhhhhhccccccccccccc
Confidence            457899  9999999999999999 89999999999999998887655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	138
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	1e-10
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	5e-09
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	8e-07

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.9 bits (122), Expect = 1e-10
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 79  KRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRK 114
           + C N  C    TP+WRR   G   LCNACG+ ++ 
Sbjct: 3   RECVN--CGATATPLWRRDRTG-HYLCNACGLYHKM 35

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 46.7 bits (111), Expect = 5e-09
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 85  NCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKR 119
           NC T  TP+WRR P G + LCNACG+  +     R
Sbjct: 5   NCFTQTTPLWRRNPEG-QPLCNACGLFLKLHGVVR 38

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.5 bits (97), Expect = 8e-07
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 85  NCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKR 119
           NC T+ T +WRR P+G   +CNACG+ Y+  +  R
Sbjct: 9   NCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQVNR 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	138
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.78
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.75
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.75
d1neea2	37	Zinc-binding domain of translation initiation fact	80.68

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.78  E-value=2.5e-20  Score=113.97  Aligned_cols=40  Identities=48%  Similarity=0.983  Sum_probs=37.5

Q ss_pred             cccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhcccchh
Q 047722           80 RCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAK  122 (138)
Q Consensus        80 ~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~~r~~~  122 (138)
                      .|+  ||++++||+||+||+| ++|||||||||+++++.||+.
T Consensus         2 ~C~--nC~tt~Tp~WRr~~~G-~~lCNACGl~~k~~g~~RP~s   41 (42)
T d2vuti1           2 TCT--NCFTQTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLS   41 (42)
T ss_dssp             CCS--SSCCCCCSCCEECTTS-CEECHHHHHHHHHHSSCCCCC
T ss_pred             cCC--CCCCCCCccceeCCCC-CCchhhhhHHHHHcCCCCCCC
Confidence            588  9999999999999999 899999999999999998864

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.75  E-value=2.4e-19  Score=119.05  Aligned_cols=54  Identities=33%  Similarity=0.807  Sum_probs=46.2

Q ss_pred             CccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhcccchhhhhcccccccccC
Q 047722           78 YKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEEKRKAKETETSNIDQNSNN  135 (138)
Q Consensus        78 ~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~~r~~~~~~~~~~~~~~~~  135 (138)
                      ...|+  ||++++||+||+||.| .+|||||||||+++++.|++.. ....|+.+++.
T Consensus         4 g~~C~--nCgt~~Tp~WRr~~~G-~~lCNACGl~~~~~~~~RP~~~-~~~~i~~r~r~   57 (66)
T d3gata_           4 GTVCS--NCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQVNRPLTM-RKDGIQTRNRK   57 (66)
T ss_dssp             TCCCT--TTCCCCCSSEEECTTS-CEEEHHHHHHHHHHCSCCCGGG-CCSSCCCCSCC
T ss_pred             CCCCC--CCCCCCCcccccCCCC-CcccchhHHHHHHhCCcCCccc-cccccccccCC
Confidence            35699  9999999999999999 8999999999999999888764 45667776664

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.5e-19  Score=108.99  Aligned_cols=37  Identities=41%  Similarity=0.990  Sum_probs=34.4

Q ss_pred             CccccCCCCCCCCCCccccCCCCCcchhhHHHHHHHhhhc
Q 047722           78 YKRCTNYNCNTNDTPMWRRGPLGPKTLCNACGIKYRKEEE  117 (138)
Q Consensus        78 ~~~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL~~~k~~~  117 (138)
                      .+.|+  +|++++||+||+||.| ++|||||||||++|++
T Consensus         2 ~r~C~--~Cgtt~Tp~WR~gp~G-~~LCNACGl~~r~~G~   38 (39)
T d1y0ja1           2 ARECV--NCGATATPLWRRDRTG-HYLCNACGLYHKMNGQ   38 (39)
T ss_dssp             CCCCS--SSCCCCCSCCEECTTS-CEECSSHHHHHHHSCC
T ss_pred             cCCCC--CCCCCCCcccccCCCC-CEeeHHhHHHHHHhCC
Confidence            46799  9999999999999999 7999999999999875

>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Small proteins
fold: Zinc-binding domain of translation initiation factor 2 beta
superfamily: Zinc-binding domain of translation initiation factor 2 beta
family: Zinc-binding domain of translation initiation factor 2 beta
domain: Zinc-binding domain of translation initiation factor 2 beta
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=80.68  E-value=0.17  Score=28.60  Aligned_cols=28  Identities=39%  Similarity=0.851  Sum_probs=22.9

Q ss_pred             cccCCCCCCCCCCccccCCCCCcchhhHHHH
Q 047722           80 RCTNYNCNTNDTPMWRRGPLGPKTLCNACGI  110 (138)
Q Consensus        80 ~C~~~~C~t~~TP~WRrGp~G~~~LCNACGL  110 (138)
                      .|.  .|+..+|-+-+.+-.- -.-|+|||-
T Consensus         3 ~C~--~C~spDT~l~ke~R~~-~l~C~aCGa   30 (37)
T d1neea2           3 ICH--ECNRPDTRIIREGRIS-LLKCEACGA   30 (37)
T ss_dssp             HHT--CCSSCSSCCEEETTTT-EEECSTTSC
T ss_pred             ECC--CCCCCCCEEEEcCCEE-EEEeccCCC
Confidence            377  9999999999987555 577999984