Citrus Sinensis ID: 047785

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MSSDRGKEIAEGSSDHHHQLQQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKPSQGKASDESSSAMHFS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccEEEEcccccccccccccccccccHHcccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHcccHHHHHHHHHHHHHccccEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHccccccccccccccccccccc
Coil and Loop (DISEMBL)
mssdrgkeiaegssdhhhqlqqpatpsryesqkrrdWNTFGQylknqrppvplsqcscnhVLDFLRYLDQFGktkvhlqgcmfygqpeppapctcplrqaWGSLDALIGRLRAAYeenggspetnpfasGAIRVYLREVRECQAkargipykkkkkkpsqgkasdesssamhfs
Flexible Loop (DISEMBL)
MSSDRGKEiaegssdhhhqlqqpatpsryesqkrRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYeenggspetnpfaSGAIRVYLREVRECQakargipykkkkkkpsqgkasdesssamhfs
Low Complexity Region (SEG)
MSSDRGKEIAEGSSDHHHQLQQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVRECQAKARGIPYkkkkkkPSQGKASDESSSAMHFS
Disordered region (IsUnstruct)
************************************WNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE**********FASGAIRVYLREVREC********************************
Disordered Region (DISOPRED)
*************************************NTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRA***************SGAIRVYLREVRECQ*******************************
Disordered Region (DISEMBL)
*********************************RRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVRECQAKARGI*************************
Disordered Region (DISPRO)
**************************SRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVRECQAKARGIP***K********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSDRGKEIAEGSSDHHHQLQQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKPSQGKASDESSSAMHFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
356543912	175	PREDICTED: uncharacterized protein LOC10	1.0	0.994	0.857	3e-83
351721022	175	uncharacterized protein LOC100306225 [Gl	1.0	0.994	0.845	2e-82
255561148	174	conserved hypothetical protein [Ricinus	0.994	0.994	0.891	5e-81
118484985	170	unknown [Populus trichocarpa]	0.971	0.994	0.820	1e-78
224128744	170	predicted protein [Populus trichocarpa]	0.977	1.0	0.850	2e-78
225446615	167	PREDICTED: uncharacterized protein LOC10	0.959	1.0	0.833	3e-76
147784987	158	hypothetical protein VITISV_034969 [Viti	0.862	0.949	0.894	2e-75
217074244	167	unknown [Medicago truncatula] gi|3884996	0.954	0.994	0.825	1e-73
224064784	152	predicted protein [Populus trichocarpa]	0.862	0.986	0.857	4e-73
357453693	186	177 protein [Medicago truncatula] gi|355	0.936	0.876	0.828	2e-72

>gi|356543912|ref|XP_003540402.1| PREDICTED: uncharacterized protein LOC100802937 [Glycine max]

 Score =  312 bits (799), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 150/175 (85%), Positives = 156/175 (89%), Gaps = 1/175 (0%)

Query: 1   MSSDRGKEIAEGSSDHHHQLQQ-PATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCN 59
           MSS   K+  EGSS      QQ P T SRYESQKRRDWNTFGQYLKNQRPPVPLSQC+CN
Sbjct: 1   MSSSSSKDFGEGSSSPTDNYQQSPGTLSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCN 60

Query: 60  HVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENG 119
           HVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENG
Sbjct: 61  HVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENG 120

Query: 120 GSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKPSQGKASDESSSAMHFS 174
           GSPETNPFASG+IRVYL+EVRECQAKARGIPYKKKKK  +Q K +DESSS MHFS
Sbjct: 121 GSPETNPFASGSIRVYLKEVRECQAKARGIPYKKKKKASNQSKGNDESSSTMHFS 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721022|ref|NP_001235660.1| uncharacterized protein LOC100306225 [Glycine max] gi|255627929|gb|ACU14309.1| unknown [Glycine max]

 Score =  310 bits (793), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 148/175 (84%), Positives = 156/175 (89%), Gaps = 1/175 (0%)

Query: 1   MSSDRGKEIAEGSSDHHHQLQQ-PATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCN 59
           MSS  GK++ EGSS      QQ P T SRYESQKRRDWNTFGQYLKNQRPPVPLSQC+CN
Sbjct: 1   MSSSSGKDLGEGSSSPTEDYQQSPGTLSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCN 60

Query: 60  HVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENG 119
           HVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDAL GRLRAAYEENG
Sbjct: 61  HVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALTGRLRAAYEENG 120

Query: 120 GSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKPSQGKASDESSSAMHFS 174
           GSPETNPFASG+IRVYL+E+RECQAKARGIPYKKKKK  +  K +DESSS MHFS
Sbjct: 121 GSPETNPFASGSIRVYLKEIRECQAKARGIPYKKKKKASNPSKGNDESSSTMHFS 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561148|ref|XP_002521586.1| conserved hypothetical protein [Ricinus communis] gi|223539264|gb|EEF40857.1| conserved hypothetical protein [Ricinus communis]

 Score =  305 bits (781), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 156/175 (89%), Positives = 165/175 (94%), Gaps = 2/175 (1%)

Query: 1   MSSDRGKEIAEGSSDHHHQLQQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCNH 60
           MS +RGK++AEGSS+ H Q  QPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQC+CNH
Sbjct: 1   MSGERGKDLAEGSSELHQQ-HQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNH 59

Query: 61  VLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG 120
           VLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG
Sbjct: 60  VLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG 119

Query: 121 SPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKPSQGKAS-DESSSAMHFS 174
           SPETNPFASGAIRV+LREVR+CQAKARGIPYKKKKKKPS  K + DES+SA HFS
Sbjct: 120 SPETNPFASGAIRVFLREVRDCQAKARGIPYKKKKKKPSPSKGNIDESTSAFHFS 174

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484985|gb|ABK94357.1| unknown [Populus trichocarpa]

 Score =  296 bits (759), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 142/173 (82%), Positives = 155/173 (89%), Gaps = 4/173 (2%)

Query: 1   MSSDRGKEIAEGSSDHHHQLQQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCNH 60
           MS +RGK+IAEGS ++    QQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQC+ NH
Sbjct: 1   MSRERGKDIAEGSIEN----QQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNSNH 56

Query: 61  VLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG 120
           VLDFLRYLDQFGKTKVHLQ CMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG
Sbjct: 57  VLDFLRYLDQFGKTKVHLQSCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG 116

Query: 121 SPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKPSQGKASDESSSAMHF 173
           + ETNPFA+ +IRVYLREV++ QAKARGIP+KKK+KK    K +DESSS M F
Sbjct: 117 TLETNPFANASIRVYLREVKDYQAKARGIPHKKKRKKQISSKGNDESSSEMQF 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128744|ref|XP_002320411.1| predicted protein [Populus trichocarpa] gi|118484025|gb|ABK93899.1| unknown [Populus trichocarpa] gi|222861184|gb|EEE98726.1| predicted protein [Populus trichocarpa]

 Score =  296 bits (758), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 148/174 (85%), Positives = 160/174 (91%), Gaps = 4/174 (2%)

Query: 1   MSSDRGKEIAEGSSDHHHQLQQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCNH 60
           MS +RGK+IAEGSS++    QQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQC+ NH
Sbjct: 1   MSRERGKDIAEGSSEN----QQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNSNH 56

Query: 61  VLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG 120
           VLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG
Sbjct: 57  VLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG 116

Query: 121 SPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKPSQGKASDESSSAMHFS 174
           +PETNPFA+ +IRVYLREVR+ QAKARGIP+KKKKK+    K +DESSSAM FS
Sbjct: 117 TPETNPFANASIRVYLREVRDYQAKARGIPHKKKKKQQISSKGNDESSSAMQFS 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446615|ref|XP_002280666.1| PREDICTED: uncharacterized protein LOC100266079 [Vitis vinifera]

 Score =  289 bits (739), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 145/174 (83%), Positives = 156/174 (89%), Gaps = 7/174 (4%)

Query: 1   MSSDRGKEIAEGSSDHHHQLQQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCNH 60
           MSS+RGK++AEGSS      QQ  TPSRYESQKRRDWNTFGQYLKNQRPPVPLSQC+CNH
Sbjct: 1   MSSERGKDLAEGSSRSPGD-QQSVTPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNH 59

Query: 61  VLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG 120
           VLDFLRYLDQFGKTKVHLQGCMF+GQPEPPAPCTCPLRQAWGSLDAL+GRLRAAYEENGG
Sbjct: 60  VLDFLRYLDQFGKTKVHLQGCMFFGQPEPPAPCTCPLRQAWGSLDALVGRLRAAYEENGG 119

Query: 121 SPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKPSQGKASDESSSAMHFS 174
           SPETNPFASGAIR+YLREVRECQ+KARGIPYKKKK      K + ES+S+  FS
Sbjct: 120 SPETNPFASGAIRIYLREVRECQSKARGIPYKKKK------KKAGESTSSGQFS 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784987|emb|CAN66524.1| hypothetical protein VITISV_034969 [Vitis vinifera]

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 135/151 (89%), Positives = 143/151 (94%), Gaps = 1/151 (0%)

Query: 1   MSSDRGKEIAEGSSDHHHQLQQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCNH 60
           MSS+RGK++AEGSS      QQ  TPSRYESQKRRDWNTFGQYLKNQRPPVPLSQC+CNH
Sbjct: 1   MSSERGKDLAEGSSRSPGD-QQSVTPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNH 59

Query: 61  VLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG 120
           VLDFLRYLDQFGKTKVHLQGCMF+GQPEPPAPCTCPLRQAWGSLDAL+GRLRAAYEENGG
Sbjct: 60  VLDFLRYLDQFGKTKVHLQGCMFFGQPEPPAPCTCPLRQAWGSLDALVGRLRAAYEENGG 119

Query: 121 SPETNPFASGAIRVYLREVRECQAKARGIPY 151
           SPETNPFASGAIR+YLREVRECQ+KARGIPY
Sbjct: 120 SPETNPFASGAIRIYLREVRECQSKARGIPY 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074244|gb|ACJ85482.1| unknown [Medicago truncatula] gi|388499638|gb|AFK37885.1| unknown [Medicago truncatula]

 Score =  280 bits (717), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 142/172 (82%), Positives = 149/172 (86%), Gaps = 6/172 (3%)

Query: 3   SDRGKEIAEGSSDHHHQLQQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCNHVL 62
           S  GK++AEG S       Q  T SRYESQKRRDWNTFGQYL N RPPVPLS C+ NHVL
Sbjct: 2   SSSGKDLAEGGSS----TSQGITLSRYESQKRRDWNTFGQYLNNLRPPVPLSHCNSNHVL 57

Query: 63  DFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSP 122
           +FLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG+P
Sbjct: 58  EFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGAP 117

Query: 123 ETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKPSQGKASDESSSAMHFS 174
           ETNPFASGAIRVYLREVREC+AKARGIPYKKKKK  S  K +DESSS MHFS
Sbjct: 118 ETNPFASGAIRVYLREVRECRAKARGIPYKKKKK--STNKGNDESSSTMHFS 167

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064784|ref|XP_002301561.1| predicted protein [Populus trichocarpa] gi|222843287|gb|EEE80834.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (712), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 132/154 (85%), Positives = 144/154 (93%), Gaps = 4/154 (2%)

Query: 4   DRGKEIAEGSSDHHHQLQQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCNHVLD 63
           +RGK+IAEGS ++    QQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQC+ NHVLD
Sbjct: 2   ERGKDIAEGSIEN----QQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNSNHVLD 57

Query: 64  FLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPE 123
           FLRYLDQFGKTKVHLQ CMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG+ E
Sbjct: 58  FLRYLDQFGKTKVHLQSCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGTLE 117

Query: 124 TNPFASGAIRVYLREVRECQAKARGIPYKKKKKK 157
           TNPFA+ +IRVYLREV++ QAKARGIP+KKK+KK
Sbjct: 118 TNPFANASIRVYLREVKDYQAKARGIPHKKKRKK 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453693|ref|XP_003597127.1| 177 protein [Medicago truncatula] gi|355486175|gb|AES67378.1| 177 protein [Medicago truncatula]

 Score =  276 bits (706), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 140/169 (82%), Positives = 146/169 (86%), Gaps = 6/169 (3%)

Query: 3   SDRGKEIAEGSSDHHHQLQQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCNHVL 62
           S  GK++AEG S       Q  T SRYESQKRRDWNTFGQYL N RPPVPLS C+ NHVL
Sbjct: 2   SSSGKDLAEGGSS----TSQGITLSRYESQKRRDWNTFGQYLNNLRPPVPLSHCNSNHVL 57

Query: 63  DFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSP 122
           +FLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG+P
Sbjct: 58  EFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGTP 117

Query: 123 ETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKPSQGKASDESSSAM 171
           ETNPFASGAIRVYLREVRECQAKARGIPYKKKKK  S  K +DESSS M
Sbjct: 118 ETNPFASGAIRVYLREVRECQAKARGIPYKKKKK--STNKGNDESSSTM 164

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2041514	177	LSH10 "AT2G42610" [Arabidopsis	0.971	0.954	0.772	1.3e-70
TAIR|locus:505006228	195	LSH7 "AT1G78815" [Arabidopsis	0.856	0.764	0.698	4.6e-57
TAIR|locus:2124067	191	LSH9 "AT4G18610" [Arabidopsis	0.867	0.790	0.708	8.6e-56
TAIR|locus:2007382	196	LSH6 "AT1G07090" [Arabidopsis	0.741	0.658	0.759	1.6e-54
TAIR|locus:2055897	219	LSH3 "AT2G31160" [Arabidopsis	0.850	0.675	0.695	5.5e-54
TAIR|locus:2082170	195	LSH4 "LIGHT SENSITIVE HYPOCOTY	0.718	0.641	0.792	2.4e-53
TAIR|locus:2147494	190	LSH1 "AT5G28490" [Arabidopsis	0.758	0.694	0.744	4.4e-52
TAIR|locus:2100850	201	LSH2 "AT3G04510" [Arabidopsis	0.741	0.641	0.736	7.2e-52
TAIR|locus:2171263	182	LSH5 "AT5G58500" [Arabidopsis	0.810	0.774	0.683	1.9e-51
TAIR|locus:2015591	164	LSH8 "AT1G16910" [Arabidopsis	0.741	0.786	0.713	1.4e-48

TAIR|locus:2041514 LSH10 "AT2G42610" [Arabidopsis thaliana (taxid:3702)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 139/180 (77%), Positives = 145/180 (80%)

Query:     1 MSS--DRGKEIAEGSSDHHHQLQQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSC 58
             MSS  +RGK + E S       + P TPSRYESQKRRDWNTFGQYLKNQRPPVP+S CSC
Sbjct:     1 MSSPRERGKSLMESSGS-----EPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSC 55

Query:    59 NHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEN 118
             NHVLDFLRYLDQFGKTKVH+ GCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEN
Sbjct:    56 NHVLDFLRYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEN 115

Query:   119 GGSPETNPFASGAIRVYLREVRECQAKARGIPYXXXXX---XPSQGKA-SDESSSAMHFS 174
             GG PETNPFASGAIRVYLREVRECQAKARGIPY         P  G    D SSS+  FS
Sbjct:   116 GGPPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSSSSSSFS 175

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006228 LSH7 "AT1G78815" [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 111/159 (69%), Positives = 126/159 (79%)

Query:     3 SDRGKEIAEGSSDHH-------HQLQQPATP---SRYESQKRRDWNTFGQYLKNQRPPVP 52
             S++GK IAEGSS          HQ Q P  P   SRYESQKRRDWNTF QYL+NQ+PPV 
Sbjct:     5 SNKGKGIAEGSSQPQSQPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQPPVH 64

Query:    53 LSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLR 112
             +SQC  NH+LDFL+YLDQFGKTKVH+ GC+F+GQ EP   C CPL+QAWGSLDALIGRLR
Sbjct:    65 ISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIGRLR 124

Query:   113 AAYEENGGSPETNPFASGAIRVYLREVRECQAKARGIPY 151
             AA+EENGG PE NPFA G IRV+LREVR+ QAKARG+PY
Sbjct:   125 AAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPY 163

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

TAIR|locus:2124067 LSH9 "AT4G18610" [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 114/161 (70%), Positives = 128/161 (79%)

Query:     1 MSSDRGKEIAE------GSSDHHHQL--QQPATP-SRYESQKRRDWNTFGQYLKNQRPPV 51
             MSSDR     +       SS+HH Q    QP  P SRYESQKRRDWNTF QYLK+Q PP+
Sbjct:     1 MSSDRHTPTKDPPDHPSSSSNHHKQPLPPQPQQPLSRYESQKRRDWNTFVQYLKSQNPPL 60

Query:    52 PLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRL 111
              +SQ    HVL FLRYLDQFGKTKVH Q C+F+GQP+PP PCTCPL+QAWGSLDALIGRL
Sbjct:    61 MMSQFDYTHVLSFLRYLDQFGKTKVHHQACVFFGQPDPPGPCTCPLKQAWGSLDALIGRL 120

Query:   112 RAAYEENGG-SPETNPFASGAIRVYLREVRECQAKARGIPY 151
             RAAYEE+GG SP+TNPFA+G+IRV+LREVRE QAKARGIPY
Sbjct:   121 RAAYEEHGGGSPDTNPFANGSIRVHLREVRESQAKARGIPY 161

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2007382 LSH6 "AT1G07090" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 98/129 (75%), Positives = 116/129 (89%)

Query:    23 PATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCM 82
             PATPSRYESQKRRDWNTF QYLKN +PP+ LS+CS  HV++FL+YLDQFGKTKVH+  C 
Sbjct:    26 PATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACP 85

Query:    83 FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVREC 142
             ++G  +PP+PC+CPL+QAWGSLDALIGRLRAAYEENGG P++NPFA+ A+R+YLREVRE 
Sbjct:    86 YFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRES 145

Query:   143 QAKARGIPY 151
             QAKARGIPY
Sbjct:   146 QAKARGIPY 154

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055897 LSH3 "AT2G31160" [Arabidopsis thaliana (taxid:3702)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 103/148 (69%), Positives = 117/148 (79%)

Query:    24 ATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMF 83
             A  SRYE+QKRRDWNTFGQYL+N RPP+ LS+CS  HVL+FLRYLDQFGKTKVH   C F
Sbjct:    50 ANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHF 109

Query:    84 YGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVRECQ 143
             YG P PPAPC CPLRQAWGSLDALIGRLRAA+EENGG PETNPF + A+R+YLREVR+ Q
Sbjct:   110 YGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQ 169

Query:   144 AKARGIPYXXXXXXPSQGKASDESSSAM 171
             +KARG+ Y           +S  SSSA+
Sbjct:   170 SKARGVSYEKKKRKRPLPSSSTSSSSAV 197

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007389 "pattern specification process" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2082170 LSH4 "LIGHT SENSITIVE HYPOCOTYLS 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 99/125 (79%), Positives = 110/125 (88%)

Query:    27 SRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQ 86
             SRYE+QKRRDWNTFGQYL+N RPP+ LS+CS  HVL+FLRYLDQFGKTKVH   C F+G 
Sbjct:    47 SRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGH 106

Query:    87 PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVRECQAKA 146
             P PPAPC CPLRQAWGSLDALIGRLRAA+EENGGSPETNPF + A+R+YLREVR+ QAKA
Sbjct:   107 PNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKA 166

Query:   147 RGIPY 151
             RGI Y
Sbjct:   167 RGISY 171

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2147494 LSH1 "AT5G28490" [Arabidopsis thaliana (taxid:3702)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 99/133 (74%), Positives = 111/133 (83%)

Query:    19 QLQQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHL 78
             QL  P++ SRYE+QKRRDWNTF QYL+N RPP+ L  CS  HVL+FLRYLDQFGKTKVH 
Sbjct:    17 QLTPPSS-SRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHH 75

Query:    79 QGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLRE 138
             Q C F+G P PPAPC CPLRQAWGSLDALIGRLRAAYEENGG PE NPF S A+R++LRE
Sbjct:    76 QNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLRE 135

Query:   139 VRECQAKARGIPY 151
             VR+ QAKARG+ Y
Sbjct:   136 VRDFQAKARGVSY 148

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0009637 "response to blue light" evidence=IGI

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0010114 "response to red light" evidence=IGI

GO:0010218 "response to far red light" evidence=IGI

TAIR|locus:2100850 LSH2 "AT3G04510" [Arabidopsis thaliana (taxid:3702)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 95/129 (73%), Positives = 110/129 (85%)

Query:    23 PATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCM 82
             P + SRYE+QKRRDWNTF QYL+N  PP+ L+ CS  HVLDFLRYLDQFGKTKVH Q C 
Sbjct:    28 PPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCA 87

Query:    83 FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVREC 142
             F+G P PPAPC CPLRQAWGSLDALIGRLRAAYEENGG+PET+PF S ++R++LREVR+ 
Sbjct:    88 FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDF 147

Query:   143 QAKARGIPY 151
             QAK+RG+ Y
Sbjct:   148 QAKSRGVSY 156

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171263 LSH5 "AT5G58500" [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 97/142 (68%), Positives = 116/142 (81%)

Query:    11 EGSSDHHHQLQQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQ 70
             EG +         ++PSRYESQKRRDWNTF QYL+N +PP+ LS+CS  HVL+FL+YLDQ
Sbjct:     2 EGETAAKAAASSSSSPSRYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKYLDQ 61

Query:    71 FGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE-NGGSPETNPFAS 129
             FGKTKVH   C F+GQP PP+ CTCPL+QAWGSLDALIGRLRAA+EE  GG PE+NPFA+
Sbjct:    62 FGKTKVHATACPFFGQPNPPSQCTCPLKQAWGSLDALIGRLRAAFEEIGGGLPESNPFAA 121

Query:   130 GAIRVYLREVRECQAKARGIPY 151
              A+R+YL+EVR+ QAKARGIPY
Sbjct:   122 KAVRIYLKEVRQTQAKARGIPY 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015591 LSH8 "AT1G16910" [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 92/129 (71%), Positives = 104/129 (80%)

Query:    23 PATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCM 82
             P T SRYESQK RDWNTF QYL  + PPV + +C  NH+LDFL+  DQFGKTKVH+QGC+
Sbjct:    18 PPTLSRYESQKSRDWNTFCQYLMTKMPPVHVWECESNHILDFLQSRDQFGKTKVHIQGCV 77

Query:    83 FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVREC 142
             F+GQ EPP  C CPL+QAWGSLDALIGRLRAAYEENGG  E NPFA G IR++LREVR  
Sbjct:    78 FFGQKEPPGECNCPLKQAWGSLDALIGRLRAAYEENGGLTEKNPFARGGIRIFLREVRGS 137

Query:   143 QAKARGIPY 151
             QAKARG+ Y
Sbjct:   138 QAKARGVLY 146


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      174       168   0.00079  108 3  11 22  0.41    32
                                                     31  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  169 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.01u 0.12s 17.13t   Elapsed:  00:00:01
  Total cpu time:  17.01u 0.12s 17.13t   Elapsed:  00:00:01
  Start:  Mon May 20 18:21:53 2013   End:  Mon May 20 18:21:54 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_kg.C_LG_XIV0027 SubName- Full=Putative uncharacterized protein; (170 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	174
pfam04852	133	pfam04852, DUF640, Protein of unknown function (DU	4e-75

>gnl|CDD|191112 pfam04852, DUF640, Protein of unknown function (DUF640)

 Score =  220 bits (563), Expect = 4e-75
 Identities = 94/122 (77%), Positives = 104/122 (85%)

Query: 21  QQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQG 80
             P   SRYESQKRRDWNTF QYL+NQRPP+ LS+CS NHVLDFLRYLDQFGKTKVH Q 
Sbjct: 12  SPPPALSRYESQKRRDWNTFCQYLRNQRPPLNLSKCSGNHVLDFLRYLDQFGKTKVHGQA 71

Query: 81  CMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVR 140
           C F+G P PPAPC CPLRQAWGSLDALIGRLRAA+EE+GG PE NPFA+ A+R+YLREVR
Sbjct: 72  CGFFGHPSPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGHPEENPFAARAVRLYLREVR 131

Query: 141 EC 142
           + 
Sbjct: 132 DS 133

This family represents a conserved region found in plant proteins including Resistance protein-like protein. Length = 133

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
PF04852	132	DUF640: Protein of unknown function (DUF640); Inte	100.0
PF08821	107	CGGC: CGGC domain; InterPro: IPR014925 Proteins in	93.07
PF02899	84	Phage_int_SAM_1: Phage integrase, N-terminal SAM-l	90.26
cd00798	284	INT_XerDC XerD and XerC integrases, DNA breaking-r	90.23
PRK00283	299	xerD site-specific tyrosine recombinase XerD; Revi	87.08
TIGR02225	291	recomb_XerD tyrosine recombinase XerD. The phage i	85.53
cd00799	287	INT_Cre Cre recombinase, C-terminal catalytic doma	85.27

>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT)

Probab=100.00  E-value=2e-77  Score=471.74  Aligned_cols=122  Identities=77%  Similarity=1.402  Sum_probs=119.1

Q ss_pred             CCCCCCchhhhhhhhhHhHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhh
Q 047785           21 QQPATPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQA  100 (174)
Q Consensus        21 ~~~~~~srYesQKrrdwntf~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqA  100 (174)
                      ++++++||||+|||||||||+|||+||+|||+|++|+++|||+||+|+|||||||||.++|+|||+|+||+||+||||||
T Consensus        11 ~~~~~~SrYesQKrrdwntf~qyL~n~rPP~~L~~csg~hVl~FL~~~d~~GkTkVh~~~C~~~g~~~~p~~C~CPlrqA   90 (132)
T PF04852_consen   11 SPQPAPSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGNHVLEFLRYLDQFGKTKVHGQGCPFFGHPSPPAPCPCPLRQA   90 (132)
T ss_pred             CCCCCCcccchhhhHHHHHHHHHHHccCCCcchhhcChHHHHHHHHHHhccCCeeecCCCCCCCCCCCCCCCCCCcHHHH
Confidence            44568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hchhHHHHHHHHHHHHHhCCCCCCCCCccchHHHHHHHHHHH
Q 047785          101 WGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVREC  142 (174)
Q Consensus       101 wGSlDALIGRLRAafee~Gg~pe~NPf~araVr~YLreVRd~  142 (174)
                      ||||||||||||||||||||.||+|||+++|||+|||||||+
T Consensus        91 wGSlDalIGrLraafee~Gg~pe~NPf~~~~vr~yLr~vr~~  132 (132)
T PF04852_consen   91 WGSLDALIGRLRAAFEEHGGHPEANPFAARAVRLYLREVRDS  132 (132)
T ss_pred             hccHHHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999985

>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region

Probab=93.07  E-value=0.22  Score=37.95  Aligned_cols=66  Identities=23%  Similarity=0.526  Sum_probs=49.5

Q ss_pred             HHHHHHhCCCCCCCCCCC---chhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHHHHHH
Q 047785           40 FGQYLKNQRPPVPLSQCS---CNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY  115 (174)
Q Consensus        40 f~qyL~n~rPPl~l~~cs---~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRLRAaf  115 (174)
                      |.+|=.+..--+.+.+|.   +..++..+..+-..|-..||..+|...+.+.+    +||.      +|.|+-.|+++|
T Consensus        30 F~~y~~~~~elvgf~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~----~CP~------~~~~~~~I~~~~   98 (107)
T PF08821_consen   30 FARYDDEDVELVGFFTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHG----PCPH------IDEIKKIIEEKF   98 (107)
T ss_pred             cccCCCCCeEEEEEeeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCC----CCCC------HHHHHHHHHHHh
Confidence            444433222334454554   58899999999999999999999999887654    6666      899999999888

The region has many conserved cysteines and histidines suggestive of a zinc binding function.

>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]

Probab=90.26  E-value=0.47  Score=31.42  Aligned_cols=40  Identities=30%  Similarity=0.473  Sum_probs=31.5

Q ss_pred             hhhhhHhHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhccC
Q 047785           32 QKRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFG   72 (174)
Q Consensus        32 QKrrdwntf~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfG   72 (174)
                      .-+++++.|.+||.+ ....++..++..||.+||.++-+.|
T Consensus        21 ~Y~~~l~~f~~~~~~-~~~~~~~~i~~~~v~~f~~~~~~~~   60 (84)
T PF02899_consen   21 SYRRDLRRFIRWLEE-HGIIDWEDITEEDVRDFLEYLAKEG   60 (84)
T ss_dssp             HHHHHHHHHHHHHHH-TTS-CGGG--HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhhhh-hhhhhhhhhhhHHHHHHHHHHHccC
Confidence            346789999999999 6667778899999999999998766

The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.

>cd00798 INT_XerDC XerD and XerC integrases, DNA breaking-rejoining enzymes, N- and C-terminal domains

Probab=90.23  E-value=1  Score=34.18  Aligned_cols=68  Identities=22%  Similarity=0.259  Sum_probs=48.8

Q ss_pred             hhhhHhHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHHH
Q 047785           33 KRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLR  112 (174)
Q Consensus        33 Krrdwntf~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRLR  112 (174)
                      -+..|+.|.+|+.....+. +..-+..||.+|+.++...|                          ....++...++-|+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~~~~~~~~--------------------------~~~~t~~~~~~~l~   74 (284)
T cd00798          22 YRRDLERFLEFLEERGILF-PADVTPDDIRRFLAELKDQG--------------------------LSARSIARKLSALR   74 (284)
T ss_pred             HHHHHHHHHHHHHHcCCCc-hhhCCHHHHHHHHHHhhhcC--------------------------CCHHHHHHHHHHHH
Confidence            3567899999998754433 56678999999999887654                          23457788888888


Q ss_pred             HHHHHhC--CCCCCCCC
Q 047785          113 AAYEENG--GSPETNPF  127 (174)
Q Consensus       113 Aafee~G--g~pe~NPf  127 (174)
                      ++|.-..  |..+.||+
T Consensus        75 ~~~~~~~~~~~~~~~p~   91 (284)
T cd00798          75 SFFKFLLREGLILANPA   91 (284)
T ss_pred             HHHHHHHHcCCccCChh
Confidence            8887432  44556887

XerD-like integrases are involved in the site-specific integration and excision of lysogenic bacteriophage genomes, transposition of conjugative transposons, termination of chromosomal replication, and stable plasmid inheritance. They share the same fold in their catalytic domain containing six conserved active site residues and the overall reaction mechanism with the DNA breaking-rejoining enzyme superfamily. In Escherichia coli, the Xer site-specific recombination system acts to convert dimeric chromosomes, which are formed by homologous recombination to monomers. Two related recombinases, XerC and XerD, bind cooperatively to a recombination site present in the E. coli chromosome. Each recombinase catalyzes the exchange of one pair of DNA strand in a reaction that proceeds through a Holliday junction intermediate. These enzymes can bridge two different and well-separated DNA sequen

>PRK00283 xerD site-specific tyrosine recombinase XerD; Reviewed

Probab=87.08  E-value=1.9  Score=33.74  Aligned_cols=68  Identities=25%  Similarity=0.298  Sum_probs=48.9

Q ss_pred             hhhhHhHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHHH
Q 047785           33 KRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLR  112 (174)
Q Consensus        33 Krrdwntf~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRLR  112 (174)
                      -+.+|+.|..||....-  .+...+..||.+|+.++.+.|                          .+-.++...+..|+
T Consensus        30 ~~~~~~~~~~~~~~~~~--~~~~l~~~~i~~~~~~~~~~~--------------------------~~~~t~~~~~~~l~   81 (299)
T PRK00283         30 YRRDLELFAEWLAARGL--SLAEATRDDLQAFLAELAEGG--------------------------YKATSSARRLSALR   81 (299)
T ss_pred             HHHHHHHHHHHHHhcCC--ChHHCCHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHH
Confidence            35688899999986432  566778999999999886531                          23457788899999


Q ss_pred             HHHHHhC--CCCCCCCCc
Q 047785          113 AAYEENG--GSPETNPFA  128 (174)
Q Consensus       113 Aafee~G--g~pe~NPf~  128 (174)
                      ++|+-..  |.-..|||.
T Consensus        82 ~~~~~a~~~~~i~~np~~   99 (299)
T PRK00283         82 RFFQFLLREGLREDDPSA   99 (299)
T ss_pred             HHHHHHHHcCCcccCchh
Confidence            9988432  345578863

>TIGR02225 recomb_XerD tyrosine recombinase XerD

Probab=85.53  E-value=2.8  Score=32.14  Aligned_cols=70  Identities=27%  Similarity=0.424  Sum_probs=48.5

Q ss_pred             hhhhhhHhHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHH
Q 047785           31 SQKRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGR  110 (174)
Q Consensus        31 sQKrrdwntf~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGR  110 (174)
                      .+-+..++.|..|+....  ..+..-+..||.+|+.++.+.|                          -+.-++...+.-
T Consensus        19 ~~~~~~~~~~~~~~~~~~--~~~~~it~~~i~~~~~~~~~~~--------------------------~~~~t~~~~~~~   70 (291)
T TIGR02225        19 EAYRRDLEKFLEFLEERG--IDLEEVDRGDIVDFLAELKEAG--------------------------LSARSIARALSA   70 (291)
T ss_pred             HHHHHHHHHHHHHHHhcC--CChHHCCHHHHHHHHHHhhcCC--------------------------CCHhHHHHHHHH
Confidence            334557788999998542  2455567899999999887644                          122467889999


Q ss_pred             HHHHHHHh--CCCCCCCCCc
Q 047785          111 LRAAYEEN--GGSPETNPFA  128 (174)
Q Consensus       111 LRAafee~--Gg~pe~NPf~  128 (174)
                      |+++|+-.  -|..+.||+.
T Consensus        71 l~~~~~~a~~~~~~~~np~~   90 (291)
T TIGR02225        71 LRSFYRFLLREGIREDDPSA   90 (291)
T ss_pred             HHHHHHHHHhcccccCCchh
Confidence            99999742  2445578874

The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerD, one of two closely related chromosomal proteins along with XerC (TIGR02224). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and with homologs of XerD on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerD, as some apparent XerD examples score below the trusted and noise cutoff scores. XerC and XerD interact with cell division protein FtsK.

>cd00799 INT_Cre Cre recombinase, C-terminal catalytic domain

Probab=85.27  E-value=8.8  Score=30.44  Aligned_cols=76  Identities=21%  Similarity=0.265  Sum_probs=52.6

Q ss_pred             hhhhHhHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHHH
Q 047785           33 KRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLR  112 (174)
Q Consensus        33 Krrdwntf~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRLR  112 (174)
                      -..+++.|..|+...-  +....-+..+|.+||.||.+.                           .+..++-..++.|+
T Consensus         7 y~~~l~~f~~~~~~~~--~~~~~~~~~~i~~~~~~l~~~---------------------------~s~~ti~~~~~~l~   57 (287)
T cd00799           7 YLSDWRRFAAWCQAHG--RTPLPASPETVTLYLTDLADS---------------------------LAPSTISRRLSALS   57 (287)
T ss_pred             HHHHHHHHHHHHHhcC--CCCCCCCHHHHHHHHHHHHhc---------------------------cChHHHHHHHHHHH
Confidence            3567889999998752  122223589999999988631                           24578888999999


Q ss_pred             HHHHHhCCCCCCCCCccchHHHHHHHHH
Q 047785          113 AAYEENGGSPETNPFASGAIRVYLREVR  140 (174)
Q Consensus       113 Aafee~Gg~pe~NPf~araVr~YLreVR  140 (174)
                      .+|+..+.   .||+....+..-|+.++
T Consensus        58 ~~~~~~~~---~~p~~~~~~~~~~~~~~   82 (287)
T cd00799          58 QLHRRSGL---PSPADSPLVRLVLRGIR   82 (287)
T ss_pred             HHHHHcCC---CCCccCHHHHHHHHHHH
Confidence            99985432   58877655666665554

Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
1xo0_A	324	Recombinase CRE; CRE recombinase, holliday junctio	92.4
3nrw_A	117	Phage integrase/site-specific recombinase; alpha-h	88.76
1a0p_A	290	Site-specific recombinase XERD; DNA binding, DNA r	85.44
2khq_A	110	Integrase; all-alpha, structural genomics, PSI-2,	80.11

>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...

Probab=92.40  E-value=0.18  Score=37.88  Aligned_cols=70  Identities=19%  Similarity=0.215  Sum_probs=52.0

Q ss_pred             hhhhhHhHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHH
Q 047785           32 QKRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRL  111 (174)
Q Consensus        32 QKrrdwntf~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRL  111 (174)
                      .-+.+|+.|..|+....  +.+...+..||.+|+.++-..|                          .+..++...+.-|
T Consensus        25 ~y~~~l~~~~~~~~~~~--~~~~~i~~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~l   76 (324)
T 1xo0_A           25 MLLSVCRSWAAWCKLNN--RKWFPAEPEDVRDYLLYLQARG--------------------------LAVKTIQQHLGQL   76 (324)
T ss_dssp             HHHHHHHHHHHHHHHHT--CCCSSCCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC--CCCCCCCHHHHHHHHHHHHhcC--------------------------cCHHHHHHHHHHH
Confidence            34568899999998753  2456678999999999885422                          3557889999999


Q ss_pred             HHHHHHhCCC-CCCCCCcc
Q 047785          112 RAAYEENGGS-PETNPFAS  129 (174)
Q Consensus       112 RAafee~Gg~-pe~NPf~a  129 (174)
                      ++.|+-.+.. +..||+..
T Consensus        77 ~~~~~~~~~~~~~~np~~~   95 (324)
T 1xo0_A           77 NMLHRRSGLPRPSDSNAVS   95 (324)
T ss_dssp             HHHHHHHTSCCGGGSHHHH
T ss_pred             HHHHHHcCCCCCCcCHHHH
Confidence            9999988632 35688743

>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}

Probab=88.76  E-value=1.4  Score=29.98  Aligned_cols=68  Identities=7%  Similarity=0.034  Sum_probs=49.1

Q ss_pred             hhhHhHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHHHH
Q 047785           34 RRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRA  113 (174)
Q Consensus        34 rrdwntf~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRLRA  113 (174)
                      +++++.|..||.... -..+...+..||.+|+.|+-..|                          .+..|+-..+.-||+
T Consensus        33 ~~~l~~f~~~l~~~~-~~~l~~it~~~i~~y~~~l~~~~--------------------------~s~~Ti~~~ls~lr~   85 (117)
T 3nrw_A           33 RYRLKHFVEWAEERD-ITAMRELTGWKLDEYETFRRGSD--------------------------VSPATLNGEMQTLKN   85 (117)
T ss_dssp             HHHHHHHHHHHHHTT-CCSGGGCCHHHHHHHHHHHHTSS--------------------------CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-CCChHHCCHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHH
Confidence            578889999997642 12566778999999999885311                          245688888888998


Q ss_pred             HHHHh--CCCCCCCCCc
Q 047785          114 AYEEN--GGSPETNPFA  128 (174)
Q Consensus       114 afee~--Gg~pe~NPf~  128 (174)
                      .|.-.  -|.-+.||+.
T Consensus        86 f~~~l~~~g~i~~nP~~  102 (117)
T 3nrw_A           86 WLEYLARIDVVDEDLPE  102 (117)
T ss_dssp             HHHHHHHTTSSCTTSGG
T ss_pred             HHHHHHHcCCcccCHHH
Confidence            88743  2556789975

>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1

Probab=85.44  E-value=2  Score=31.73  Aligned_cols=69  Identities=17%  Similarity=0.159  Sum_probs=48.1

Q ss_pred             hhhhhHhHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHH
Q 047785           32 QKRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRL  111 (174)
Q Consensus        32 QKrrdwntf~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRL  111 (174)
                      .-+..++.|..|+...  .+.+..-+..||.+|+.++-..                          ..+..++...+.-|
T Consensus        26 ~y~~~l~~~~~~~~~~--~~~~~~i~~~~i~~~~~~l~~~--------------------------~~s~~t~~~~~~~l   77 (290)
T 1a0p_A           26 AYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLEG--------------------------GYKATSSARLLSAV   77 (290)
T ss_dssp             HHHHHHHHHHHHHHHT--SCCTTTCCHHHHHHHHHSCC---------------------------------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc--CCChhhCCHHHHHHHHHHHHhc--------------------------CCCHHHHHHHHHHH
Confidence            3456788899999887  3467778899999999976421                          12456788889999


Q ss_pred             HHHHHHhC--CCCCCCCCc
Q 047785          112 RAAYEENG--GSPETNPFA  128 (174)
Q Consensus       112 RAafee~G--g~pe~NPf~  128 (174)
                      +++|...-  |..+.||+.
T Consensus        78 ~~~~~~~~~~~~i~~np~~   96 (290)
T 1a0p_A           78 RRLFQYLYREKFREDDPSA   96 (290)
T ss_dssp             HHHHHHHHHTTSSSSCTTS
T ss_pred             HHHHHHHHhCCCccCChhh
Confidence            99988542  455689985

>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}

Probab=80.11  E-value=3.1  Score=26.78  Aligned_cols=63  Identities=14%  Similarity=0.252  Sum_probs=44.2

Q ss_pred             hhHhHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchhHHHHHHHHHH
Q 047785           35 RDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAA  114 (174)
Q Consensus        35 rdwntf~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSlDALIGRLRAa  114 (174)
                      +.++.|..|+.+    +.|..-+..||.+|+.++.+                           ..+..++..++.-||++
T Consensus        30 ~~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~---------------------------~~s~~t~~~~~~~l~~~   78 (110)
T 2khq_A           30 SAYKHIKDHFRH----KLLKDIKRTEYQKFLNEYGL---------------------------THSYETIRKLNSYIRNA   78 (110)
T ss_dssp             HHHHHHHHHCSS----CBGGGCCHHHHHHHHHHHHH---------------------------HSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCc----CCHhhCCHHHHHHHHHHHHH---------------------------HhhHHHHHHHHHHHHHH
Confidence            345557777754    45667789999999998742                           12446888999999999


Q ss_pred             HHHh--CCCCCCCCCc
Q 047785          115 YEEN--GGSPETNPFA  128 (174)
Q Consensus       115 fee~--Gg~pe~NPf~  128 (174)
                      |+-.  -|--+.||+.
T Consensus        79 ~~~a~~~~~i~~NP~~   94 (110)
T 2khq_A           79 FDDAIHEGYVIKNPTY   94 (110)
T ss_dssp             HHHHHHTTCCCCCGGG
T ss_pred             HHHHHHCCCcccCccc
Confidence            9743  1445689984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d1f44a1	110	Cre recombinase {Bacteriophage P1 [TaxId: 10678]}	97.76

>d1f44a1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}

class: All alpha proteins
fold: SAM domain-like
superfamily: lambda integrase-like, N-terminal domain
family: lambda integrase-like, N-terminal domain
domain: Cre recombinase
species: Bacteriophage P1 [TaxId: 10678]

Probab=97.76  E-value=7.3e-05  Score=51.91  Aligned_cols=87  Identities=21%  Similarity=0.263  Sum_probs=69.6

Q ss_pred             CCchhhhhhhhhHhHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhccCCeeeeccCCCCCCCCCCCCCCCCchhhhhchh
Q 047785           25 TPSRYESQKRRDWNTFGQYLKNQRPPVPLSQCSCNHVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSL  104 (174)
Q Consensus        25 ~~srYesQKrrdwntf~qyL~n~rPPl~l~~cs~~hVleFL~ylDqfGkTkVH~~~C~~fg~p~ppapC~CPlRqAwGSl  104 (174)
                      |...|    ++||+.|.+|+.++.-  ++..++..+|.+||.+|-.-|                          .+..|+
T Consensus        22 T~~aY----~~dl~~f~~w~~~~~~--~~l~~~~~~v~~yl~~l~~~g--------------------------~s~sTi   69 (110)
T d1f44a1          22 TWKML----LSVCRSWAAWCKLNNR--KWFPAEPEDVRDYLLYLQARG--------------------------LAVKTI   69 (110)
T ss_dssp             HHHHH----HHHHHHHHHHHHHTTC--CTTTTCHHHHHHHHHHHHHTT--------------------------CCHHHH
T ss_pred             HHHHH----HHHHHHHHHHHhhhcc--cccchhhhHHHHHHHHHHhcC--------------------------CCccHH
Confidence            44455    5799999999988864  345689999999999985533                          456789


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCccchHHHHHHHHHHHHHhh
Q 047785          105 DALIGRLRAAYEENGGSPETNPFASGAIRVYLREVRECQAKA  146 (174)
Q Consensus       105 DALIGRLRAafee~Gg~pe~NPf~araVr~YLreVRd~QAkA  146 (174)
                      .--|.-||..|...|-.   +|+.+..|++.|+-++-..+.+
T Consensus        70 ~R~lsair~f~r~~g~~---~p~~~~~V~~~l~~i~R~~~~~  108 (110)
T d1f44a1          70 QQHLGQLNMLHRRSGLP---RPSDSNAVSLVMRRIRKENVDA  108 (110)
T ss_dssp             HHHHHHHHHHHHHTTCC---CGGGSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCC---CCcCCHHHHHHHHHccccccCC
Confidence            99999999999888753   7999999999999998776653