Citrus Sinensis ID: 047849
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 651 | 2.2.26 [Sep-21-2011] | |||||||
| Q01899 | 675 | Heat shock 70 kDa protein | N/A | no | 0.989 | 0.954 | 0.843 | 0.0 | |
| P37900 | 675 | Heat shock 70 kDa protein | N/A | no | 0.989 | 0.954 | 0.836 | 0.0 | |
| Q9LDZ0 | 682 | Heat shock 70 kDa protein | yes | no | 1.0 | 0.954 | 0.800 | 0.0 | |
| Q08276 | 682 | Heat shock 70 kDa protein | N/A | no | 0.998 | 0.953 | 0.811 | 0.0 | |
| Q8GUM2 | 682 | Heat shock 70 kDa protein | no | no | 0.987 | 0.942 | 0.765 | 0.0 | |
| B6IVA4 | 640 | Chaperone protein DnaK OS | yes | no | 0.907 | 0.923 | 0.642 | 0.0 | |
| Q2VYT1 | 642 | Chaperone protein DnaK OS | yes | no | 0.866 | 0.878 | 0.668 | 0.0 | |
| Q11KJ6 | 636 | Chaperone protein DnaK OS | yes | no | 0.907 | 0.929 | 0.638 | 0.0 | |
| B8EIP9 | 634 | Chaperone protein DnaK OS | yes | no | 0.907 | 0.932 | 0.638 | 0.0 | |
| A7IC65 | 631 | Chaperone protein DnaK OS | yes | no | 0.906 | 0.935 | 0.636 | 0.0 |
| >sp|Q01899|HSP7M_PHAVU Heat shock 70 kDa protein, mitochondrial OS=Phaseolus vulgaris PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1135 bits (2937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/678 (84%), Positives = 610/678 (89%), Gaps = 34/678 (5%)
Query: 4 SVLLRQLRRRDVASAPISAYKCFTSNIKPSWAPSNLGKSWASLTRPFSSKPAGNDIIGID 63
+ +LR LRRRDVASA SAY+ T + KP++ + + W+ L RPFSS+PAGND+IGID
Sbjct: 2 AAVLRSLRRRDVASATFSAYRSLTGSTKPAY----VAQKWSCLARPFSSRPAGNDVIGID 57
Query: 64 LGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFG 123
LGTTNSCV++MEGKNPKVIENSEG+RTTPSVVAFNQKGELLVGTPAKRQAVTNPTNT+FG
Sbjct: 58 LGTTNSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFG 117
Query: 124 TKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAE 183
TKRLIGR+FDDPQTQKEM+MV +KIV+APNGDAWVEANGQQYSPSQIGAFVLTKMKETAE
Sbjct: 118 TKRLIGRRFDDPQTQKEMKMVPFKIVKAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAE 177
Query: 184 SYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEGLI 243
+YLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAA+LSYGMNNKEGLI
Sbjct: 178 AYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLI 237
Query: 244 AVFDLGGGTFDVSILEISNGVFE-----------------------------DEGIDLSK 274
AVFDLGGGTFDVSILEISNGVFE E IDLSK
Sbjct: 238 AVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKRTESIDLSK 297
Query: 275 DRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIE 334
DRLALQRLREAAEKAKIELSST+QT+INLPFITADASGAKHLNITLTRSKFE LVN+LIE
Sbjct: 298 DRLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNHLIE 357
Query: 335 RTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALG 394
RT+APCK+CLKDAN++ KDVDEVLLVGGMTRVPKVQEVV IFGKSPSKGVNPDEAVA+G
Sbjct: 358 RTKAPCKSCLKDANVSIKDVDEVLLVGGMTRVPKVQEVVLNIFGKSPSKGVNPDEAVAMG 417
Query: 395 AAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQT 454
AAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQT
Sbjct: 418 AAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQT 477
Query: 455 QVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKATG 514
QVGIKVLQGEREMASDNK LGEF+LVGIPPAPRG+PQIEVTFDIDANGIVTVSAKDK+TG
Sbjct: 478 QVGIKVLQGEREMASDNKMLGEFDLVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTG 537
Query: 515 KEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYR 574
KEQQITIRSSGGLSEDEIEKMVKEAELHAQ+D ERK LIDIRN ADTTIYSIEKSLGEYR
Sbjct: 538 KEQQITIRSSGGLSEDEIEKMVKEAELHAQKDQERKTLIDIRNSADTTIYSIEKSLGEYR 597
Query: 575 EKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHM-AGGSGGGAASG 633
EKIPSE AKEIEDAV+DLRKAM DNVD+IKSKLDAANKAVSKIG+HM G SGG +A G
Sbjct: 598 EKIPSETAKEIEDAVSDLRKAMSGDNVDEIKSKLDAANKAVSKIGEHMSGGSSGGSSAGG 657
Query: 634 GSQGGEQTPEAEYEEVKK 651
GG+Q PEAEYEEVKK
Sbjct: 658 SQGGGDQAPEAEYEEVKK 675
|
Phaseolus vulgaris (taxid: 3885) |
| >sp|P37900|HSP7M_PEA Heat shock 70 kDa protein, mitochondrial OS=Pisum sativum GN=HSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1121 bits (2899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/677 (83%), Positives = 615/677 (90%), Gaps = 33/677 (4%)
Query: 4 SVLLRQLRRRDVASAPISAYKCFTSNIKPSWAPSNLGKSWASLTRPFSSKPAGNDIIGID 63
+ LLR L+RR+++S+ +SA++ T + K S+A L ASLTRPFSS+PAGND+IGID
Sbjct: 3 ATLLRSLQRRNLSSSSVSAFRSLTGSTKTSYATHKL----ASLTRPFSSRPAGNDVIGID 58
Query: 64 LGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFG 123
LGTTNSCV++MEGKNPKVIENSEG+RTTPSVVAFNQK ELLVGTPAKRQAVTNPTNTLFG
Sbjct: 59 LGTTNSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKSELLVGTPAKRQAVTNPTNTLFG 118
Query: 124 TKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAE 183
TKRLIGR+FDD QTQKEM+MV YKIVRAPNGDAWVEANGQQYSPSQIGAFVLTK+KETAE
Sbjct: 119 TKRLIGRRFDDAQTQKEMKMVPYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKIKETAE 178
Query: 184 SYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEGLI 243
+YLGK++SKAV+TVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAA+LSYGMNNKEGLI
Sbjct: 179 AYLGKTISKAVVTVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLI 238
Query: 244 AVFDLGGGTFDVSILEISNGVFE-----------------------------DEGIDLSK 274
AVFDLGGGTFDVSILEISNGVFE E IDL+K
Sbjct: 239 AVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVSEFKRTESIDLAK 298
Query: 275 DRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIE 334
D+LALQRLREAAEKAKIELSST+QT+INLPFI+ADASGAKHLNITLTRSKFE LVNNLIE
Sbjct: 299 DKLALQRLREAAEKAKIELSSTSQTEINLPFISADASGAKHLNITLTRSKFEALVNNLIE 358
Query: 335 RTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALG 394
RT+APCK+CLKDANI+ KDVDEVLLVGGMTRVPKVQ+VVSEIFGKSPSKGVNPDEAVA+G
Sbjct: 359 RTKAPCKSCLKDANISIKDVDEVLLVGGMTRVPKVQQVVSEIFGKSPSKGVNPDEAVAMG 418
Query: 395 AAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQT 454
AA+QGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLI+RNTTIPTKKSQVFSTAADNQT
Sbjct: 419 AALQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLISRNTTIPTKKSQVFSTAADNQT 478
Query: 455 QVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKATG 514
QVGIKVLQGEREMA+DNKSLGEF+LVGIPPAPRG+PQIEVTFDIDANGIVTVSAKDK+TG
Sbjct: 479 QVGIKVLQGEREMAADNKSLGEFDLVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTG 538
Query: 515 KEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYR 574
KEQQITIRSSGGLS+DEI+KMVKEAELHAQRD ERKALIDIRN ADT+IYSIEKSL EYR
Sbjct: 539 KEQQITIRSSGGLSDDEIDKMVKEAELHAQRDQERKALIDIRNSADTSIYSIEKSLAEYR 598
Query: 575 EKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAGGSGGGAASGG 634
EKIP+EVAKEIEDAV+DLR AM +N DDIK+KLDAANKAVSKIGQHM+GGS GG + GG
Sbjct: 599 EKIPAEVAKEIEDAVSDLRTAMAGENADDIKAKLDAANKAVSKIGQHMSGGSSGGPSEGG 658
Query: 635 SQGGEQTPEAEYEEVKK 651
SQGGEQ PEAEYEEVKK
Sbjct: 659 SQGGEQAPEAEYEEVKK 675
|
Pisum sativum (taxid: 3888) |
| >sp|Q9LDZ0|HSP7J_ARATH Heat shock 70 kDa protein 10, mitochondrial OS=Arabidopsis thaliana GN=HSP70-10 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1103 bits (2852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/682 (80%), Positives = 602/682 (88%), Gaps = 31/682 (4%)
Query: 1 MATSVLLRQLRRRDVASAPISAYKCFTSNIKPSWAPSNLGKSWASLTRPFSSKPAGNDII 60
MAT+ LLR +RRR+V S+P SAY+C +S+ K S S LG+++ S +R FSSKPAGND+I
Sbjct: 1 MATAALLRSIRRREVVSSPFSAYRCLSSSGKASLNSSYLGQNFRSFSRAFSSKPAGNDVI 60
Query: 61 GIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNT 120
GIDLGTTNSCVA+MEGKNPKVIEN+EG+RTTPSVVAFN KGELLVGTPAKRQAVTNPTNT
Sbjct: 61 GIDLGTTNSCVAVMEGKNPKVIENAEGARTTPSVVAFNTKGELLVGTPAKRQAVTNPTNT 120
Query: 121 LFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKE 180
+ GTKRLIGRKFDDPQTQKEM+MV YKIVRAPNGDAWVEANGQQYSPSQIGAF+LTKMKE
Sbjct: 121 VSGTKRLIGRKFDDPQTQKEMKMVPYKIVRAPNGDAWVEANGQQYSPSQIGAFILTKMKE 180
Query: 181 TAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKE 240
TAE+YLGKSV+KAV+TVPAYFNDAQRQATKDAGRIAGLDV+RIINEPTAA+LSYGM NKE
Sbjct: 181 TAEAYLGKSVTKAVVTVPAYFNDAQRQATKDAGRIAGLDVERIINEPTAAALSYGMTNKE 240
Query: 241 GLIAVFDLGGGTFDVSILEISNGVFE-----------------------------DEGID 271
GLIAVFDLGGGTFDVS+LEISNGVFE EGID
Sbjct: 241 GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKTTEGID 300
Query: 272 LSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNN 331
L+KDRLALQRLREAAEKAKIELSST+QT+INLPFITADASGAKH NITLTRS+FETLVN+
Sbjct: 301 LAKDRLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHFNITLTRSRFETLVNH 360
Query: 332 LIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAV 391
LIERTR PCKNCLKDA I+ K+VDEVLLVGGMTRVPKVQ +V+EIFGKSPSKGVNPDEAV
Sbjct: 361 LIERTRDPCKNCLKDAGISAKEVDEVLLVGGMTRVPKVQSIVAEIFGKSPSKGVNPDEAV 420
Query: 392 ALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD 451
A+GAA+QGGILRGDVKELLLLDVTPLSLGIETLGG+FTRLI RNTTIPTKKSQVFSTAAD
Sbjct: 421 AMGAALQGGILRGDVKELLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQVFSTAAD 480
Query: 452 NQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDK 511
NQTQVGI+VLQGEREMA+DNK LGEF+LVGIPP+PRG+PQIEVTFDIDANGIVTVSAKDK
Sbjct: 481 NQTQVGIRVLQGEREMATDNKLLGEFDLVGIPPSPRGVPQIEVTFDIDANGIVTVSAKDK 540
Query: 512 ATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLG 571
TGK QQITIRSSGGLSED+I+KMV+EAELHAQ+D ERK LID +N ADTTIYSIEKSLG
Sbjct: 541 TTGKVQQITIRSSGGLSEDDIQKMVREAELHAQKDKERKELIDTKNTADTTIYSIEKSLG 600
Query: 572 EYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHM--AGGSGGG 629
EYREKIPSE+AKEIEDAVADLR A D++++IK+K++AANKAVSKIG+HM G G
Sbjct: 601 EYREKIPSEIAKEIEDAVADLRSASSGDDLNEIKAKIEAANKAVSKIGEHMSGGSGGGSA 660
Query: 630 AASGGSQGGEQTPEAEYEEVKK 651
G G +Q PEAEYEEVKK
Sbjct: 661 PGGGSEGGSDQAPEAEYEEVKK 682
|
In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q08276|HSP7M_SOLTU Heat shock 70 kDa protein, mitochondrial OS=Solanum tuberosum GN=HSP68 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1088 bits (2813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/683 (81%), Positives = 600/683 (87%), Gaps = 33/683 (4%)
Query: 1 MATSVLLRQLRRRDVASAPISAYKCFTSNIKPSWAPSNLGKSWASLTRPFSSKPAGNDII 60
MAT+ LLR LRRR+ A++ ISAY+ SN KPSW PS +G WA L RPFSSKPAGN+II
Sbjct: 1 MATAALLRSLRRREFATSSISAYRTLASNTKPSWCPSLVGAKWAGLARPFSSKPAGNEII 60
Query: 61 GIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNT 120
GIDLGTTNSCVA+MEGKNPKVIENSEG+RTTPSVVAFNQKGELLVGTPAKRQAVTNPTNT
Sbjct: 61 GIDLGTTNSCVAVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNT 120
Query: 121 LFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKE 180
L GTKRLIGR+FDDPQTQKEM+MV YKIVR NGDAWVEANGQQYSP+QIGAF+LTKMKE
Sbjct: 121 LSGTKRLIGRRFDDPQTQKEMKMVPYKIVRGSNGDAWVEANGQQYSPTQIGAFILTKMKE 180
Query: 181 TAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKE 240
TAE+YLGKS++KAVITVPAYFNDAQRQA KDAG IAGLDVQRIINEPTAA+LSYGMN+KE
Sbjct: 181 TAEAYLGKSINKAVITVPAYFNDAQRQAIKDAGAIAGLDVQRIINEPTAAALSYGMNSKE 240
Query: 241 GLIAVFDLGGGTFDVSILEISNGVFE-----------------------------DEGID 271
GL+AVFDLGGGTFDVSILEISNGVFE EGID
Sbjct: 241 GLVAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTEGID 300
Query: 272 LSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNN 331
LSKD+LALQRLREAAEKAKIELSST+QTDINLPFITADASGAKHLNITLTRSKFETLVN+
Sbjct: 301 LSKDKLALQRLREAAEKAKIELSSTSQTDINLPFITADASGAKHLNITLTRSKFETLVNH 360
Query: 332 LIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAV 391
LIERTR PCKNCLKDA ++ KDVDEVLLVGGMTRVPKVQE+VSEIFGKSPSKGVNPDEAV
Sbjct: 361 LIERTRNPCKNCLKDAGVSLKDVDEVLLVGGMTRVPKVQEIVSEIFGKSPSKGVNPDEAV 420
Query: 392 ALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD 451
A+GAA+QGGILRGDVKELLLLDVTPL+ GIETLGGIFTRLINRNTTIPTKKSQVFSTAAD
Sbjct: 421 AMGAALQGGILRGDVKELLLLDVTPLARGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD 480
Query: 452 NQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGM-PQIEVTFDIDANGIVTVSAKD 510
NQTQVGIKVLQGEREMASDNK LGEF+LVGIPPAP+G PQIEV FDIDANG+VTVSAKD
Sbjct: 481 NQTQVGIKVLQGEREMASDNKLLGEFDLVGIPPAPKGYCPQIEVIFDIDANGMVTVSAKD 540
Query: 511 KATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQR-DNERKALIDIRNQADTTIYSIEKS 569
KAT KEQQITIRSSGGLSEDEI+KMV+EAE+HAQR N R LI Q+ TTIYSIEKS
Sbjct: 541 KATSKEQQITIRSSGGLSEDEIDKMVREAEMHAQRIKNARHLLISGIVQS-TTIYSIEKS 599
Query: 570 LGEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHM-AGGSGG 628
L EY+EK+P EV EIE A++DLR AMG +N+DDIK+KLDAANKAVSKIG+HM G SGG
Sbjct: 600 LSEYKEKVPKEVVTEIETAISDLRAAMGTENIDDIKAKLDAANKAVSKIGEHMAGGSSGG 659
Query: 629 GAASGGSQGGEQTPEAEYEEVKK 651
+ GG+QGG+Q PEAEYEEVKK
Sbjct: 660 ASGGGGAQGGDQPPEAEYEEVKK 682
|
Solanum tuberosum (taxid: 4113) |
| >sp|Q8GUM2|HSP7I_ARATH Heat shock 70 kDa protein 9, mitochondrial OS=Arabidopsis thaliana GN=HSP70-9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1013 bits (2620), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/681 (76%), Positives = 584/681 (85%), Gaps = 38/681 (5%)
Query: 1 MATSVLLRQLRRRDVASAPISAYKCFTSNIKPSWAPSNLGKSWASLTRPFSSKPAGNDII 60
MA+ LLR RRR+V A +SA+K ++N K S GK L RPF S+P GND+I
Sbjct: 1 MASVALLRSFRRREVQMASVSAFKSVSANGKNSM----FGK-LGYLARPFCSRPVGNDVI 55
Query: 61 GIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNT 120
GIDLGTTNSCV++MEGK +VIEN+EGSRTTPSVVA NQKGELLVGTPAKRQAVTNPTNT
Sbjct: 56 GIDLGTTNSCVSVMEGKTARVIENAEGSRTTPSVVAMNQKGELLVGTPAKRQAVTNPTNT 115
Query: 121 LFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKE 180
+FG+KRLIGR+FDDPQTQKEM+MV YKIV+APNGDAWVEANGQ++SPSQIGA VLTKMKE
Sbjct: 116 IFGSKRLIGRRFDDPQTQKEMKMVPYKIVKAPNGDAWVEANGQKFSPSQIGANVLTKMKE 175
Query: 181 TAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKE 240
TAE+YLGKS++KAV+TVPAYFNDAQRQATKDAG+IAGLDVQRIINEPTAA+LSYGMNNKE
Sbjct: 176 TAEAYLGKSINKAVVTVPAYFNDAQRQATKDAGKIAGLDVQRIINEPTAAALSYGMNNKE 235
Query: 241 GLIAVFDLGGGTFDVSILEISNGVFE-----------------------------DEGID 271
G+IAVFDLGGGTFDVSILEIS+GVFE + ID
Sbjct: 236 GVIAVFDLGGGTFDVSILEISSGVFEVKATNGDTFLGGEDFDNTLLEYLVNEFKRSDNID 295
Query: 272 LSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNN 331
L+KD LALQRLREAAEKAKIELSSTTQT+INLPFITADASGAKHLNITLTRSKFE LV
Sbjct: 296 LTKDNLALQRLREAAEKAKIELSSTTQTEINLPFITADASGAKHLNITLTRSKFEGLVGK 355
Query: 332 LIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAV 391
LIERTR+PC+NCLKDA +T K+VDEVLLVGGMTRVPKVQE+VSEIFGKSP KGVNPDEAV
Sbjct: 356 LIERTRSPCQNCLKDAGVTIKEVDEVLLVGGMTRVPKVQEIVSEIFGKSPCKGVNPDEAV 415
Query: 392 ALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD 451
A+GAAIQGGILRGDVK+LLLLDV PLSLGIETLG +FT+LI RNTTIPTKKSQVFSTAAD
Sbjct: 416 AMGAAIQGGILRGDVKDLLLLDVVPLSLGIETLGAVFTKLIPRNTTIPTKKSQVFSTAAD 475
Query: 452 NQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDK 511
NQ QVGIKVLQGEREMA+DNK LGEF+LVGIPPAPRGMPQIEVTFDIDANGI TVSAKDK
Sbjct: 476 NQMQVGIKVLQGEREMAADNKVLGEFDLVGIPPAPRGMPQIEVTFDIDANGITTVSAKDK 535
Query: 512 ATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLG 571
ATGKEQ ITIRSSGGLS+DEI +MVKEAEL+AQ+D E+K LID+RN ADTTIYS+EKSL
Sbjct: 536 ATGKEQNITIRSSGGLSDDEINRMVKEAELNAQKDQEKKQLIDLRNSADTTIYSVEKSLS 595
Query: 572 EYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMA----GGSG 627
EYREKIP+E+A EIE AV+DLR AM ++V+DIK+K++AANKAVSKIG+HM+
Sbjct: 596 EYREKIPAEIASEIETAVSDLRTAMAGEDVEDIKAKVEAANKAVSKIGEHMSKGSGSSGS 655
Query: 628 GGAASGGSQGGEQTPEAEYEE 648
G++ G+ G EQTPEAE+EE
Sbjct: 656 DGSSGEGTSGTEQTPEAEFEE 676
|
In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage. Arabidopsis thaliana (taxid: 3702) |
| >sp|B6IVA4|DNAK_RHOCS Chaperone protein DnaK OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/629 (64%), Positives = 495/629 (78%), Gaps = 38/629 (6%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
+IGIDLGTTNSCVA+MEG KVIEN+EG+RTTPS+VAF Q GE LVG PAKRQAVTNP
Sbjct: 4 VIGIDLGTTNSCVAIMEGTQAKVIENAEGARTTPSMVAFTQGGERLVGQPAKRQAVTNPE 63
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKM 178
NT F KRLIGR++DDP TQK+ +V Y+IV NGDAWVE++G+QYSPS+I AF+L KM
Sbjct: 64 NTFFAIKRLIGRRYDDPLTQKDKGLVPYRIVGGKNGDAWVESHGKQYSPSEISAFILQKM 123
Query: 179 KETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNN 238
KETAE+YLG+ V++AVITVPAYFND+QRQATKDAG+IAGL+V RIINEPTAA+L+YGM
Sbjct: 124 KETAENYLGEKVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGMEK 183
Query: 239 K-EGLIAVFDLGGGTFDVSILEISNGVFE-----------------------------DE 268
K G IAV+DLGGGTFD+S+LEI +GVFE ++
Sbjct: 184 KGTGTIAVYDLGGGTFDISVLEIGDGVFEVKSTNGDTFLGGEDFDAKIIDYLAEEFQKEQ 243
Query: 269 GIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETL 328
GIDL KDRLALQRL+EAAEKAKIELS++ QT++NLPFITADASG KHLNI LTRSK E L
Sbjct: 244 GIDLRKDRLALQRLKEAAEKAKIELSASMQTEVNLPFITADASGPKHLNIKLTRSKLEAL 303
Query: 329 VNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPD 388
V++L+ RT PCK LKDA + ++DEV+LVGGMTR+PK+ E V + FG+ P +GVNPD
Sbjct: 304 VDDLVRRTIEPCKAALKDAGLKASEIDEVILVGGMTRMPKIIETVKQFFGREPHRGVNPD 363
Query: 389 EAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFST 448
E VA+GAAIQGG+L+G+VK++LLLDVTPLSLGIETLGG+FTRLI+RNTTIPTKKSQVFST
Sbjct: 364 EVVAVGAAIQGGVLKGEVKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQVFST 423
Query: 449 AADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSA 508
A DNQT V I+V QGEREMA+DNK LG+F+L+GIP APRG+PQIEVTFDIDANGIV VSA
Sbjct: 424 AEDNQTAVTIRVFQGEREMAADNKMLGQFDLMGIPSAPRGVPQIEVTFDIDANGIVNVSA 483
Query: 509 KDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEK 568
KDKATGKEQ I I++SGGLS+ +I++MVK+AE HA D +R+ L++ RNQAD I++ E+
Sbjct: 484 KDKATGKEQTIRIQASGGLSDADIDRMVKDAEAHAAEDKKRRELVEARNQADGLIHTTER 543
Query: 569 SLGEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHM------ 622
+L E +K+P E A+A+LR AM AD+V DIK+K DA +A K+G+ +
Sbjct: 544 TLSENGDKLPGAEKSAAEAAIAELRTAMAADDVADIKAKTDALAQASMKLGEALYKAGQE 603
Query: 623 AGGSGG-GAASGGSQ-GGEQTPEAEYEEV 649
GG G G SG S+ GGE+ +A++EEV
Sbjct: 604 TGGPGAPGGDSGASEAGGEKVVDADFEEV 632
|
Acts as a chaperone. Rhodospirillum centenum (strain ATCC 51521 / SW) (taxid: 414684) |
| >sp|Q2VYT1|DNAK_MAGSA Chaperone protein DnaK OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/594 (66%), Positives = 474/594 (79%), Gaps = 30/594 (5%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
+IGIDLGTTNSCVA+MEGKN KVIEN+EG RTTPS+ AF + GE LVG PAKRQAVTNPT
Sbjct: 4 VIGIDLGTTNSCVAVMEGKNAKVIENAEGMRTTPSMTAFTESGERLVGQPAKRQAVTNPT 63
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKM 178
+TLF KRLIGR+F+DP T+K+M +V Y IV NGDAWVEA +YSPSQ+ AF+L KM
Sbjct: 64 STLFAIKRLIGRRFEDPITKKDMNLVPYHIVAGDNGDAWVEARDAKYSPSQVSAFILQKM 123
Query: 179 KETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNN 238
KETAE YLG+ V++AVITVPAYFNDAQRQATKDAGRIAGL+V RIINEPTAA+L+YG+
Sbjct: 124 KETAEGYLGEKVTQAVITVPAYFNDAQRQATKDAGRIAGLEVLRIINEPTAAALAYGLEK 183
Query: 239 K-EGLIAVFDLGGGTFDVSILEISNGVFE-----------------------------DE 268
K G IAV+DLGGGTFDVS+LEI +GVFE ++
Sbjct: 184 KGAGTIAVYDLGGGTFDVSVLEIGDGVFEVKSTNGDTFLGGEDFDARIMDYLADEFKKEQ 243
Query: 269 GIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETL 328
GIDL KDRLALQRL+EAAEKAKIELSS+ QT++NLPFITADASG KHLNI LTRSK E L
Sbjct: 244 GIDLRKDRLALQRLKEAAEKAKIELSSSMQTEVNLPFITADASGPKHLNIKLTRSKLEAL 303
Query: 329 VNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPD 388
V +L+ RT PCK LKDA + ++DEV+LVGGMTR+PK+QEVV E FG+ P KGVNPD
Sbjct: 304 VEDLVARTVEPCKAALKDAGVKASEIDEVILVGGMTRMPKIQEVVKEFFGREPHKGVNPD 363
Query: 389 EAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFST 448
E VA+GAAIQGG+L+G+VK++LLLDVTPLSLGIETLGG+FTRLI+RNTTIPT+KSQVFST
Sbjct: 364 EVVAIGAAIQGGVLKGEVKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTRKSQVFST 423
Query: 449 AADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSA 508
A DNQT V I+V QGEREMA+DNK LG+F+LVGIPPAPRG+PQ+EVTFDIDANG+V VSA
Sbjct: 424 AEDNQTAVTIRVFQGEREMAADNKVLGQFDLVGIPPAPRGVPQVEVTFDIDANGLVNVSA 483
Query: 509 KDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEK 568
KDKATGKEQQI I++SGGLS+ +IEKMVKEAE HA D +RK LI+ RN AD I++ EK
Sbjct: 484 KDKATGKEQQIRIQASGGLSDADIEKMVKEAEAHAAEDKKRKELIEARNHADGLIHTTEK 543
Query: 569 SLGEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHM 622
SL E+ +K +E+ IE + L+ M D+V+ IK+K ++ +A K+G+ M
Sbjct: 544 SLKEFGDKAGAELTGAIEKEITALKAVMDGDDVEAIKAKTESLMQASMKLGEAM 597
|
Acts as a chaperone. Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) (taxid: 342108) |
| >sp|Q11KJ6|DNAK_MESSB Chaperone protein DnaK OS=Mesorhizobium sp. (strain BNC1) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/625 (63%), Positives = 494/625 (79%), Gaps = 34/625 (5%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
+IGIDLGTTNSCVA+M+GK+ KVIEN+EG+RTTPS+VAF E LVG PAKRQAVTNP
Sbjct: 4 VIGIDLGTTNSCVAVMDGKDAKVIENAEGARTTPSIVAFTDSDERLVGQPAKRQAVTNPE 63
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKM 178
NT F KRLIGR+F+DP +K+ ++V YKIV+A NGDAWVE++G +YSPSQI A +L KM
Sbjct: 64 NTFFAIKRLIGRRFEDPMVEKDKKLVPYKIVKADNGDAWVESHGTKYSPSQISAMILQKM 123
Query: 179 KETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNN 238
KETAESYLG+ V KAVITVPAYFNDAQRQATKDAG+IAGL+V RIINEPTAA+L+YG++
Sbjct: 124 KETAESYLGEKVEKAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 183
Query: 239 KEG-LIAVFDLGGGTFDVSILEISNGVFE-----------------------------DE 268
KEG IAV+DLGGGTFD+SILEI +GVFE ++
Sbjct: 184 KEGKTIAVYDLGGGTFDISILEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFKKEQ 243
Query: 269 GIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETL 328
GIDL D+LALQRL+EAAEKAKIELSS++QT+INLPFITAD +G KHL I LTR+KFE+L
Sbjct: 244 GIDLKNDKLALQRLKEAAEKAKIELSSSSQTEINLPFITADQTGPKHLAIKLTRAKFESL 303
Query: 329 VNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPD 388
V +L+ RT PC+ LKDA ++ ++DEV+LVGGMTR+PKVQE V FGK P KGVNPD
Sbjct: 304 VEDLVTRTIEPCRAALKDAGLSAGEIDEVVLVGGMTRMPKVQETVKNFFGKEPHKGVNPD 363
Query: 389 EAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFST 448
E VA+GAAIQ G+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI+RNTTIPTKKSQVFST
Sbjct: 364 EVVAMGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQVFST 423
Query: 449 AADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSA 508
A DNQ V I+V QGEREMA+DNK LG+F+LVGIPPAPRGMPQIEVTFDIDANGIV VSA
Sbjct: 424 AEDNQNAVTIRVFQGEREMAADNKLLGQFDLVGIPPAPRGMPQIEVTFDIDANGIVNVSA 483
Query: 509 KDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEK 568
KDK TGKEQQI I++SGGLS+ EIEKMVK+AE +A+ D +R+ ++++NQA+ I+S EK
Sbjct: 484 KDKGTGKEQQIRIQASGGLSDAEIEKMVKDAEANAEADKKRRETVEVKNQAEALIHSTEK 543
Query: 569 SLGEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAGGSGG 628
SL +Y +K+ + K IE+A+A+L+ A ++ D I++K A +A K+GQ + S
Sbjct: 544 SLKDYGDKVSEDDRKAIENAIAELKTATEGEDADAIRAKTTALAEASMKLGQAVYEASQA 603
Query: 629 GAASGGSQ--GG--EQTPEAEYEEV 649
A+GG++ GG + +A++EE+
Sbjct: 604 ENAAGGTEETGGAKDDVVDADFEEI 628
|
Acts as a chaperone. Mesorhizobium sp. (strain BNC1) (taxid: 266779) |
| >sp|B8EIP9|DNAK_METSB Chaperone protein DnaK OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/622 (63%), Positives = 490/622 (78%), Gaps = 31/622 (4%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
+IGIDLGTTNSCVA+MEG PKVIEN+EG+RTTPS+VAF GE LVG PAKRQ+VTNP
Sbjct: 4 VIGIDLGTTNSCVAVMEGTTPKVIENAEGARTTPSIVAFTDDGERLVGQPAKRQSVTNPE 63
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKM 178
T F KRLIGR +DDP T+K+M +V YKI+RA NGDAWVEA+G+QYSPSQI AF+L KM
Sbjct: 64 RTFFAIKRLIGRTYDDPMTKKDMGLVPYKIIRASNGDAWVEADGKQYSPSQISAFILQKM 123
Query: 179 KETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNN 238
KETAE+YLG+ VS+AVITVPAYFNDAQRQATKDAG+IAGL+V RIINEPTAA+L+YG++
Sbjct: 124 KETAEAYLGQPVSQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 183
Query: 239 K-EGLIAVFDLGGGTFDVSILEISNGVFE-----------------------------DE 268
K G+IAV+DLGGGTFDVSILEI +GVFE +
Sbjct: 184 KGAGVIAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDVRLVEYLADEFKKEN 243
Query: 269 GIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETL 328
GIDL KD+LALQRL+EAAEKAKIELSS TQT+INLP+ITADA+G KHL + LTR+KFE L
Sbjct: 244 GIDLKKDKLALQRLKEAAEKAKIELSSATQTEINLPYITADATGPKHLTLKLTRAKFEAL 303
Query: 329 VNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPD 388
V++LI++T PC+ LKDA +T +++EV+LVGGMTR+PKVQEVV FGK P KGVNPD
Sbjct: 304 VDDLIQKTVEPCRKALKDAGLTAGEINEVVLVGGMTRMPKVQEVVKSFFGKEPHKGVNPD 363
Query: 389 EAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFST 448
E VA+GAA+Q G+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI+RNTTIPTKKSQVFST
Sbjct: 364 EVVAIGAAVQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQVFST 423
Query: 449 AADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSA 508
A DNQT V I+V QGEREMA+DNK LG+F+LVGIP APRG+PQIEVTFDIDANGIV V+A
Sbjct: 424 AEDNQTAVTIRVFQGEREMAADNKLLGQFDLVGIPGAPRGVPQIEVTFDIDANGIVNVTA 483
Query: 509 KDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEK 568
KDKAT KEQQI I++SGGLSE +I+KMVK+AE+HA D +R+ L+D RNQA+ ++S EK
Sbjct: 484 KDKATNKEQQIRIQASGGLSEGDIDKMVKDAEVHAAEDKKRRELVDARNQAEAMVHSAEK 543
Query: 569 SLGEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHM-AGGSG 627
SL E+ K+ +E A+A ++ + ++V+ IK++ + +A K+G+ M G+
Sbjct: 544 SLTEFAGKVSDADKSALEAAIASVKGVLEGEDVEAIKARSNDLAQASMKLGEAMYKAGAE 603
Query: 628 GGAASGGSQGGEQTPEAEYEEV 649
G GG + +A+++EV
Sbjct: 604 AGPQEGGGAEKDDVIDADFKEV 625
|
Acts as a chaperone. Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) (taxid: 395965) |
| >sp|A7IC65|DNAK_XANP2 Chaperone protein DnaK OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/621 (63%), Positives = 486/621 (78%), Gaps = 31/621 (4%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
IIGIDLGTTNSCVA+MEG PKVIEN+EG+RTTPS+VAF + GE LVG PAKRQ+VTNP
Sbjct: 4 IIGIDLGTTNSCVAVMEGSTPKVIENAEGARTTPSIVAFTEDGERLVGQPAKRQSVTNPE 63
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKM 178
T F KRLIGR++DDP +K+ +V Y IVRA NGDAWVEA+G++YSPSQI AFVL KM
Sbjct: 64 RTFFAVKRLIGRRYDDPTVEKDKHLVPYSIVRADNGDAWVEADGKKYSPSQISAFVLQKM 123
Query: 179 KETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNN 238
KETAES+LG+ V KAVITVPAYFNDAQRQATKDAGRIAGL+V RIINEPTAA+L+YG++
Sbjct: 124 KETAESFLGEKVEKAVITVPAYFNDAQRQATKDAGRIAGLEVLRIINEPTAAALAYGLDK 183
Query: 239 KE-GLIAVFDLGGGTFDVSILEISNGVFE-----------------------------DE 268
K G IAV+DLGGGTFDVS+LEI +GVFE ++
Sbjct: 184 KSAGTIAVYDLGGGTFDVSVLEIGDGVFEVKSTNGDTFLGGEDFDMRLVTYLADEFKKEQ 243
Query: 269 GIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETL 328
GIDL D+LALQRL+EAAEKAKIELSS TQT+INLPFITADA+G KHL + LTR+KFE L
Sbjct: 244 GIDLRNDKLALQRLKEAAEKAKIELSSATQTEINLPFITADATGPKHLTLKLTRAKFEAL 303
Query: 329 VNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPD 388
V++LI+RT PC+ LKDA +T +DEV+LVGGMTR+PKVQEVV + FGK P KGVNPD
Sbjct: 304 VDDLIQRTVEPCRLALKDAGLTAGQIDEVVLVGGMTRMPKVQEVVKQFFGKEPHKGVNPD 363
Query: 389 EAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFST 448
E VA+GAA+Q G+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI+RNTTIPTKKSQ FST
Sbjct: 364 EVVAIGAAVQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQTFST 423
Query: 449 AADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSA 508
A D QT V I+V QGEREMA+DNK LG+F+L+GIPPAPRG+PQ+EVTFDIDANGIV VSA
Sbjct: 424 AEDGQTAVTIRVFQGEREMAADNKMLGQFDLMGIPPAPRGVPQVEVTFDIDANGIVQVSA 483
Query: 509 KDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEK 568
KDK TGKEQQI I++SGGL++ +IEKMVK+AE HA D +R+AL++ +N A+ ++S EK
Sbjct: 484 KDKGTGKEQQIRIQASGGLNDADIEKMVKDAEAHAAEDKKRRALVEAKNHAEALVHSTEK 543
Query: 569 SLGEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAGGSGG 628
++ E+ +K+ + IE A+ADL+ + D+V+ I +K + +A K+G+ M
Sbjct: 544 AVAEHGDKVGAVEKGAIEAALADLKSTLEGDDVEAITAKTNTLAQASLKLGEAMYAAQQP 603
Query: 629 GAASGGSQGGEQTPEAEYEEV 649
G A G ++ + +AE+ EV
Sbjct: 604 G-AEGAAKPADDVVDAEFTEV 623
|
Acts as a chaperone. Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) (taxid: 78245) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 651 | ||||||
| 255554571 | 657 | heat shock protein, putative [Ricinus co | 0.960 | 0.951 | 0.866 | 0.0 | |
| 224105855 | 682 | predicted protein [Populus trichocarpa] | 1.0 | 0.954 | 0.847 | 0.0 | |
| 224060991 | 683 | predicted protein [Populus trichocarpa] | 1.0 | 0.953 | 0.841 | 0.0 | |
| 356554826 | 674 | PREDICTED: heat shock 70 kDa protein, mi | 0.986 | 0.952 | 0.856 | 0.0 | |
| 356549495 | 674 | PREDICTED: heat shock 70 kDa protein, mi | 0.986 | 0.952 | 0.856 | 0.0 | |
| 449459554 | 680 | PREDICTED: heat shock 70 kDa protein, mi | 1.0 | 0.957 | 0.861 | 0.0 | |
| 399940 | 675 | RecName: Full=Heat shock 70 kDa protein, | 0.989 | 0.954 | 0.843 | 0.0 | |
| 225429228 | 679 | PREDICTED: heat shock 70 kDa protein, mi | 0.996 | 0.955 | 0.860 | 0.0 | |
| 359496771 | 682 | PREDICTED: heat shock 70 kDa protein, mi | 1.0 | 0.954 | 0.826 | 0.0 | |
| 356524786 | 677 | PREDICTED: heat shock 70 kDa protein, mi | 0.969 | 0.932 | 0.853 | 0.0 |
| >gi|255554571|ref|XP_002518324.1| heat shock protein, putative [Ricinus communis] gi|223542544|gb|EEF44084.1| heat shock protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1157 bits (2994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/654 (86%), Positives = 599/654 (91%), Gaps = 29/654 (4%)
Query: 1 MATSVLLRQLRRRDVASAPISAYKCFTSNIKPSWAPSNLGKSWASLTRPFSSKPAGNDII 60
MAT+ L+R LRRRDVASAP SAYKC T N+KPSW PSNLG +W SL+R FSSKPAGND+I
Sbjct: 1 MATAALIRTLRRRDVASAPFSAYKCLTGNVKPSWTPSNLGHNWGSLSRAFSSKPAGNDVI 60
Query: 61 GIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNT 120
GIDLGTTNSCVA+MEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNT
Sbjct: 61 GIDLGTTNSCVAVMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNT 120
Query: 121 LFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKE 180
+FGTKRLIGRKFDDPQTQKEM+MV YKIVRA NGDAWVEANGQQYSPSQIGAFVLTKMKE
Sbjct: 121 VFGTKRLIGRKFDDPQTQKEMKMVPYKIVRASNGDAWVEANGQQYSPSQIGAFVLTKMKE 180
Query: 181 TAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKE 240
T+E+YLGK+V+KAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAA+LSYGMNNKE
Sbjct: 181 TSEAYLGKTVTKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKE 240
Query: 241 GLIAVFDLGGGTFDVSILEISNGVFE-----------------------------DEGID 271
GLIAVFDLGGGTFDVSILEISNGVFE E ID
Sbjct: 241 GLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLEYLVSEFKRTEAID 300
Query: 272 LSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNN 331
L+KDRLALQRLREAAEKAKIELSST QT+INLPFITADASGAKHLNITLTRSKFE+LVN+
Sbjct: 301 LTKDRLALQRLREAAEKAKIELSSTAQTEINLPFITADASGAKHLNITLTRSKFESLVNH 360
Query: 332 LIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAV 391
LIERTRAPCKNCLKDA I+TKDVDEVLLVGGMTRVPKVQE+VSEIFGKSPSKGVNPDEAV
Sbjct: 361 LIERTRAPCKNCLKDAGISTKDVDEVLLVGGMTRVPKVQEIVSEIFGKSPSKGVNPDEAV 420
Query: 392 ALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD 451
A+GAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD
Sbjct: 421 AMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD 480
Query: 452 NQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDK 511
NQTQVGIKVLQGEREMASDNK LGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDK
Sbjct: 481 NQTQVGIKVLQGEREMASDNKLLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDK 540
Query: 512 ATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLG 571
+TGKEQQITIRSSGGLSEDEI+KMVKEAEL AQ+D ERKALIDI+N ADTTIYSIEKSL
Sbjct: 541 STGKEQQITIRSSGGLSEDEIDKMVKEAELFAQKDQERKALIDIKNSADTTIYSIEKSLN 600
Query: 572 EYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAGG 625
EYREKIP+E AKEIED++ADLR AM +N D+IKSKLDAANKAVSKIG+HM+ G
Sbjct: 601 EYREKIPAETAKEIEDSLADLRTAMAGENADEIKSKLDAANKAVSKIGEHMSKG 654
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224105855|ref|XP_002313955.1| predicted protein [Populus trichocarpa] gi|222850363|gb|EEE87910.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1152 bits (2981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/682 (84%), Positives = 624/682 (91%), Gaps = 31/682 (4%)
Query: 1 MATSVLLRQLRRRDVASAPISAYKCFTSNIKPSWAPSNLGKSWASLTRPFSSKPAGNDII 60
MAT+ LLR LRRRDVASAP++AY+ ++N+KPSWAPSN ++ + L+R FS+KPAG+D+I
Sbjct: 1 MATAALLRSLRRRDVASAPLAAYRSLSNNVKPSWAPSNFSQNLSGLSRAFSAKPAGSDVI 60
Query: 61 GIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNT 120
GIDLGTTNSCVA+MEGK+PKVIEN+EGSRTTPSVVAF KGELL+GTPAKRQAVTNP+NT
Sbjct: 61 GIDLGTTNSCVAVMEGKSPKVIENAEGSRTTPSVVAFTPKGELLMGTPAKRQAVTNPSNT 120
Query: 121 LFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKE 180
+FGTKRLIGRKFDDPQTQKEM+MV YKIVRAPNGDAWVE+NGQQYSPSQIGAF+LTKMKE
Sbjct: 121 VFGTKRLIGRKFDDPQTQKEMKMVPYKIVRAPNGDAWVESNGQQYSPSQIGAFILTKMKE 180
Query: 181 TAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKE 240
TAE+YLGK++SKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAA+LSYGMNNKE
Sbjct: 181 TAEAYLGKTISKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKE 240
Query: 241 GLIAVFDLGGGTFDVSILEISNGVFE-----------------------------DEGID 271
GLIAVFDLGGGTFDVSILEISNGVFE EGID
Sbjct: 241 GLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLEYLVNEFKRTEGID 300
Query: 272 LSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNN 331
LSKD+LALQRLREAAEKAKIELSSTTQTDINLPFITAD+SGAKHLNITLTRSKFE+LVN+
Sbjct: 301 LSKDKLALQRLREAAEKAKIELSSTTQTDINLPFITADSSGAKHLNITLTRSKFESLVNH 360
Query: 332 LIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAV 391
LIERTR PCKNCLKDA I+TK+VDEVLLVGGMTRVP+VQE+VSEIFGKSPSKGVNPDEAV
Sbjct: 361 LIERTRIPCKNCLKDAGISTKEVDEVLLVGGMTRVPRVQEIVSEIFGKSPSKGVNPDEAV 420
Query: 392 ALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD 451
A+GAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLI+RNTTIPTKKSQVFSTAAD
Sbjct: 421 AMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLISRNTTIPTKKSQVFSTAAD 480
Query: 452 NQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDK 511
NQTQVGIKVLQGEREMASDNK LGEFEL+GIPPAPRGMPQIEVTFDIDANGIVTVSAKDK
Sbjct: 481 NQTQVGIKVLQGEREMASDNKMLGEFELMGIPPAPRGMPQIEVTFDIDANGIVTVSAKDK 540
Query: 512 ATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLG 571
+TGKEQQITIRSSGGLSEDEIEKMVKEAEL AQ+D +RKALIDI+N ADTTIYSIEKSL
Sbjct: 541 STGKEQQITIRSSGGLSEDEIEKMVKEAELFAQKDQDRKALIDIKNSADTTIYSIEKSLD 600
Query: 572 EYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHM--AGGSGGG 629
EYREKIPSEVAKEIEDAVADLRKAMG DNVDDIKSKLDAANKAVSKIG+H+ GG
Sbjct: 601 EYREKIPSEVAKEIEDAVADLRKAMGGDNVDDIKSKLDAANKAVSKIGEHLSKGSSGGGD 660
Query: 630 AASGGSQGGEQTPEAEYEEVKK 651
+ASGGSQGG+Q PEAEYEEVKK
Sbjct: 661 SASGGSQGGDQAPEAEYEEVKK 682
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224060991|ref|XP_002300311.1| predicted protein [Populus trichocarpa] gi|222847569|gb|EEE85116.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1148 bits (2970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/683 (84%), Positives = 622/683 (91%), Gaps = 32/683 (4%)
Query: 1 MATSVLLRQLRRRDVASAPISAYKCFTSNIKPSWAPSNLGKSWASLTRPFSSKPAGNDII 60
MAT+ L+R LRRRDVASAP+SAY+C T+N KPSWAPSN ++WA L+R FS+KPAG D+I
Sbjct: 1 MATAALIRSLRRRDVASAPLSAYRCLTNNGKPSWAPSNFSQNWAGLSRAFSAKPAGGDVI 60
Query: 61 GIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNT 120
G+DLGTTNSCVA+MEGKNPKVIEN+EGSRTTPSVVAF KGELLVGTPAKRQAVTNP+NT
Sbjct: 61 GVDLGTTNSCVAVMEGKNPKVIENAEGSRTTPSVVAFTPKGELLVGTPAKRQAVTNPSNT 120
Query: 121 LFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKE 180
+FGTKRLIGRKFDDPQTQKEM+MV YKIVRAPNGDAWVEANGQQYSPSQIGAF+LTKMKE
Sbjct: 121 VFGTKRLIGRKFDDPQTQKEMKMVPYKIVRAPNGDAWVEANGQQYSPSQIGAFILTKMKE 180
Query: 181 TAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKE 240
TAE+YLGK ++KAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAA+LSYGMNNKE
Sbjct: 181 TAEAYLGKGITKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKE 240
Query: 241 GLIAVFDLGGGTFDVSILEISNGVFE-----------------------------DEGID 271
GLIAVFDLGGGTFDVSILEISNGVFE EGID
Sbjct: 241 GLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLEYLVDEFKRTEGID 300
Query: 272 LSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNN 331
LSKD+LALQRLREAAEKAKIELSSTTQT+INLPFITAD+SGAKHLNITLTRSKFE+LVN+
Sbjct: 301 LSKDKLALQRLREAAEKAKIELSSTTQTEINLPFITADSSGAKHLNITLTRSKFESLVNH 360
Query: 332 LIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAV 391
LIERTR PCKNCLKDA I+TK+VDEVLLVGGMTRVPKVQ++V+EIFGKSPSKGVNPDEAV
Sbjct: 361 LIERTRIPCKNCLKDAGISTKEVDEVLLVGGMTRVPKVQDIVAEIFGKSPSKGVNPDEAV 420
Query: 392 ALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD 451
A+GAA+QGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLI+RNTTIPTKKSQ FSTAAD
Sbjct: 421 AMGAALQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLISRNTTIPTKKSQAFSTAAD 480
Query: 452 NQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDK 511
NQTQVGIKVLQGEREMASDNK LGEF+LVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDK
Sbjct: 481 NQTQVGIKVLQGEREMASDNKLLGEFDLVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDK 540
Query: 512 ATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLG 571
TGKEQQITIRSSGGLSEDEIEKMVKEAE AQ+D ERKALIDI+N ADTTIYS+EKSL
Sbjct: 541 TTGKEQQITIRSSGGLSEDEIEKMVKEAEQFAQKDQERKALIDIKNSADTTIYSVEKSLN 600
Query: 572 EYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHM---AGGSGG 628
EYREKIPSE++KEIEDAVADLRKAMG D+VDDIKSKLDAANKAVSKIG+HM + G G
Sbjct: 601 EYREKIPSEISKEIEDAVADLRKAMGGDSVDDIKSKLDAANKAVSKIGEHMSKGSSGGGD 660
Query: 629 GAASGGSQGGEQTPEAEYEEVKK 651
GA+ GGSQGG+QTPEA++EEVKK
Sbjct: 661 GASGGGSQGGDQTPEADFEEVKK 683
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554826|ref|XP_003545743.1| PREDICTED: heat shock 70 kDa protein, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1147 bits (2968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/675 (85%), Positives = 619/675 (91%), Gaps = 33/675 (4%)
Query: 6 LLRQLRRRDVASAPISAYKCFTSNIKPSWAPSNLGKSWASLTRPFSSKPAGNDIIGIDLG 65
LLR LRRRDVASA +SAY+ T + KP++ N W+SL+RPFSS+PAGND+IGIDLG
Sbjct: 4 LLRSLRRRDVASASLSAYRSLTGSTKPAYVAHN----WSSLSRPFSSRPAGNDVIGIDLG 59
Query: 66 TTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTK 125
TTNSCV++MEGKNPKVIENSEG+RTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTK
Sbjct: 60 TTNSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTK 119
Query: 126 RLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESY 185
RLIGR+FDD QTQKEM+MV +KIV+APNGDAWVEANGQQYSPSQIGAFVLTKMKETAE+Y
Sbjct: 120 RLIGRRFDDAQTQKEMKMVPFKIVKAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAY 179
Query: 186 LGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEGLIAV 245
LGKS+SKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAA+LSYGMN KEGLIAV
Sbjct: 180 LGKSISKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNKKEGLIAV 239
Query: 246 FDLGGGTFDVSILEISNGVFE-----------------------------DEGIDLSKDR 276
FDLGGGTFDVSILEISNGVFE E IDL+KDR
Sbjct: 240 FDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKRTESIDLAKDR 299
Query: 277 LALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERT 336
LALQRLREAAEKAKIELSST+QT+INLPFITADASGAKHLNITLTRSKFE LVN+LIERT
Sbjct: 300 LALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNHLIERT 359
Query: 337 RAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAA 396
+APCK+CLKDANI+ KDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVA+GAA
Sbjct: 360 KAPCKSCLKDANISIKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVAMGAA 419
Query: 397 IQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQV 456
IQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQV
Sbjct: 420 IQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQV 479
Query: 457 GIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKATGKE 516
GIKVLQGEREMA+DNK LGEF+LVGIPPAPRG+PQIEVTFDIDANGIVTVSAKDK+TGKE
Sbjct: 480 GIKVLQGEREMAADNKMLGEFDLVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTGKE 539
Query: 517 QQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREK 576
QQITIRSSGGLSEDEIEKMVKEAELHAQ+D ERKALIDIRN ADTTIYSIEKSLGEYR+K
Sbjct: 540 QQITIRSSGGLSEDEIEKMVKEAELHAQKDQERKALIDIRNSADTTIYSIEKSLGEYRDK 599
Query: 577 IPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAGGSGGGAASGGSQ 636
IPSEVAKEIEDAV+DLRKAM DNVD+IKSKLDAANKAVSKIG+HM+GGS GG+++GGSQ
Sbjct: 600 IPSEVAKEIEDAVSDLRKAMSEDNVDEIKSKLDAANKAVSKIGEHMSGGSSGGSSAGGSQ 659
Query: 637 GGEQTPEAEYEEVKK 651
GG+Q PEAEYEEVKK
Sbjct: 660 GGDQAPEAEYEEVKK 674
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549495|ref|XP_003543129.1| PREDICTED: heat shock 70 kDa protein, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1146 bits (2965), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/675 (85%), Positives = 619/675 (91%), Gaps = 33/675 (4%)
Query: 6 LLRQLRRRDVASAPISAYKCFTSNIKPSWAPSNLGKSWASLTRPFSSKPAGNDIIGIDLG 65
LLR LRRRDVASA +SAY+ T + KP++ N W+SL+RPFSS+PAGND+IGIDLG
Sbjct: 4 LLRSLRRRDVASASLSAYRSLTGSTKPAYVAHN----WSSLSRPFSSRPAGNDVIGIDLG 59
Query: 66 TTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTK 125
TTNSCV++MEGKNPKVIENSEG+RTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTK
Sbjct: 60 TTNSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTK 119
Query: 126 RLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESY 185
RLIGR+FDD QTQKEM+MV +KIV+APNGDAWVEANGQQYSPSQIGAFVLTKMKETAE+Y
Sbjct: 120 RLIGRRFDDAQTQKEMKMVPFKIVKAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAY 179
Query: 186 LGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEGLIAV 245
LGKS+SKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAA+LSYGMNNKEGLIAV
Sbjct: 180 LGKSISKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAV 239
Query: 246 FDLGGGTFDVSILEISNGVFE-----------------------------DEGIDLSKDR 276
FDLGGGTFDVSILEISNGVFE E IDLSKDR
Sbjct: 240 FDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKRTESIDLSKDR 299
Query: 277 LALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERT 336
LALQRLREAAEKAKIELSST+QT+INLPFITADASGAKHLNITLTRSKFE LVN+LIERT
Sbjct: 300 LALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNHLIERT 359
Query: 337 RAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAA 396
+ PCK+CLKDANI+ KDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVA+GAA
Sbjct: 360 KVPCKSCLKDANISIKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVAMGAA 419
Query: 397 IQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQV 456
IQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQV
Sbjct: 420 IQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQV 479
Query: 457 GIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKATGKE 516
GIKVLQGEREMA+DNK LGEF+LVGIPPAPRG+PQIEVTFDIDANGIVTVSAKDK+TGKE
Sbjct: 480 GIKVLQGEREMAADNKMLGEFDLVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTGKE 539
Query: 517 QQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREK 576
QQITIRSSGGLS+DEIEKMVKEAELHAQ+D ERKALIDIRN ADTTIYSIEKSLGEYREK
Sbjct: 540 QQITIRSSGGLSDDEIEKMVKEAELHAQKDQERKALIDIRNSADTTIYSIEKSLGEYREK 599
Query: 577 IPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAGGSGGGAASGGSQ 636
IPSEVAKEIEDAV+DLR+AM DNVD+IKSKLDAANKAVSKIG+HM+GGS GG+++GGSQ
Sbjct: 600 IPSEVAKEIEDAVSDLRQAMSGDNVDEIKSKLDAANKAVSKIGEHMSGGSSGGSSAGGSQ 659
Query: 637 GGEQTPEAEYEEVKK 651
GG+Q PEAEYEEVKK
Sbjct: 660 GGDQAPEAEYEEVKK 674
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459554|ref|XP_004147511.1| PREDICTED: heat shock 70 kDa protein, mitochondrial-like [Cucumis sativus] gi|449511372|ref|XP_004163938.1| PREDICTED: heat shock 70 kDa protein, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1146 bits (2965), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 586/680 (86%), Positives = 628/680 (92%), Gaps = 29/680 (4%)
Query: 1 MATSVLLRQLRRRDVASAPISAYKCFTSNIKPSWAPSNLGKSWASLTRPFSSKPAGNDII 60
MAT VLLR LRRRD+AS+ +SAY+ +SN KPSW S+L +SWASL+RPFSSKPAGND+I
Sbjct: 1 MATGVLLRSLRRRDLASSSLSAYRSLSSNAKPSWGNSHLSQSWASLSRPFSSKPAGNDVI 60
Query: 61 GIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNT 120
G+DLGTTNSCVA+MEGKNPKVIENSEG+RTTPSVVAFNQKGELLVGTPAKRQAVTNPTNT
Sbjct: 61 GVDLGTTNSCVAVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNT 120
Query: 121 LFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKE 180
+FGTKRLIGR+FDDPQTQKEM+MV YKIV+APNGDAWVEANGQQYSPSQIGAFVLTKMKE
Sbjct: 121 VFGTKRLIGRRFDDPQTQKEMKMVPYKIVKAPNGDAWVEANGQQYSPSQIGAFVLTKMKE 180
Query: 181 TAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKE 240
TAE+YLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGL+V RIINEPTAA+LSYGMNNKE
Sbjct: 181 TAEAYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLEVLRIINEPTAAALSYGMNNKE 240
Query: 241 GLIAVFDLGGGTFDVSILEISNGVFE-----------------------------DEGID 271
GLIAVFDLGGGTFDVSILEISNGVFE EGID
Sbjct: 241 GLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVSEFKRTEGID 300
Query: 272 LSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNN 331
L+KDRLALQRLREAAEKAKIELSST+QT+INLPFITAD+SGAKHLNITLTRSKFE+LVN+
Sbjct: 301 LTKDRLALQRLREAAEKAKIELSSTSQTEINLPFITADSSGAKHLNITLTRSKFESLVNH 360
Query: 332 LIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAV 391
LIERT+APC+NCLKDA+I+ K+VDEVLLVGGMTRVPKVQEVV+EIFGKSPSKGVNPDEAV
Sbjct: 361 LIERTKAPCRNCLKDASISIKEVDEVLLVGGMTRVPKVQEVVTEIFGKSPSKGVNPDEAV 420
Query: 392 ALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD 451
A+GAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLI+RNTTIPTKKSQVFSTAAD
Sbjct: 421 AMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLISRNTTIPTKKSQVFSTAAD 480
Query: 452 NQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDK 511
NQTQVGIKVLQGEREMA+DNK LGEFELVGIPPAPRG+PQIEVTFDIDANGIVTVSAKDK
Sbjct: 481 NQTQVGIKVLQGEREMATDNKLLGEFELVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDK 540
Query: 512 ATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLG 571
+TGKEQQITIRSSGGLSEDEI+KMVKEAELHAQ+D ERKALIDIRN ADTTIYSIEKSL
Sbjct: 541 STGKEQQITIRSSGGLSEDEIDKMVKEAELHAQKDQERKALIDIRNSADTTIYSIEKSLS 600
Query: 572 EYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAGGSGGGAA 631
EYREKIPSEVAKEIEDAVADLRKAM DN+++IKSKLDAANKAVSKIGQHMAGGSG GA+
Sbjct: 601 EYREKIPSEVAKEIEDAVADLRKAMSEDNLEEIKSKLDAANKAVSKIGQHMAGGSGDGAS 660
Query: 632 SGGSQGGEQTPEAEYEEVKK 651
GGSQGGEQ EAEYEEVKK
Sbjct: 661 GGGSQGGEQASEAEYEEVKK 680
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|399940|sp|Q01899.1|HSP7M_PHAVU RecName: Full=Heat shock 70 kDa protein, mitochondrial; Flags: Precursor gi|22636|emb|CAA47345.1| 70 kDa heat shock protein [Phaseolus vulgaris] | Back alignment and taxonomy information |
|---|
Score = 1135 bits (2937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/678 (84%), Positives = 610/678 (89%), Gaps = 34/678 (5%)
Query: 4 SVLLRQLRRRDVASAPISAYKCFTSNIKPSWAPSNLGKSWASLTRPFSSKPAGNDIIGID 63
+ +LR LRRRDVASA SAY+ T + KP++ + + W+ L RPFSS+PAGND+IGID
Sbjct: 2 AAVLRSLRRRDVASATFSAYRSLTGSTKPAY----VAQKWSCLARPFSSRPAGNDVIGID 57
Query: 64 LGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFG 123
LGTTNSCV++MEGKNPKVIENSEG+RTTPSVVAFNQKGELLVGTPAKRQAVTNPTNT+FG
Sbjct: 58 LGTTNSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFG 117
Query: 124 TKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAE 183
TKRLIGR+FDDPQTQKEM+MV +KIV+APNGDAWVEANGQQYSPSQIGAFVLTKMKETAE
Sbjct: 118 TKRLIGRRFDDPQTQKEMKMVPFKIVKAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAE 177
Query: 184 SYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEGLI 243
+YLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAA+LSYGMNNKEGLI
Sbjct: 178 AYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLI 237
Query: 244 AVFDLGGGTFDVSILEISNGVFE-----------------------------DEGIDLSK 274
AVFDLGGGTFDVSILEISNGVFE E IDLSK
Sbjct: 238 AVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKRTESIDLSK 297
Query: 275 DRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIE 334
DRLALQRLREAAEKAKIELSST+QT+INLPFITADASGAKHLNITLTRSKFE LVN+LIE
Sbjct: 298 DRLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNHLIE 357
Query: 335 RTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALG 394
RT+APCK+CLKDAN++ KDVDEVLLVGGMTRVPKVQEVV IFGKSPSKGVNPDEAVA+G
Sbjct: 358 RTKAPCKSCLKDANVSIKDVDEVLLVGGMTRVPKVQEVVLNIFGKSPSKGVNPDEAVAMG 417
Query: 395 AAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQT 454
AAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQT
Sbjct: 418 AAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQT 477
Query: 455 QVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKATG 514
QVGIKVLQGEREMASDNK LGEF+LVGIPPAPRG+PQIEVTFDIDANGIVTVSAKDK+TG
Sbjct: 478 QVGIKVLQGEREMASDNKMLGEFDLVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTG 537
Query: 515 KEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYR 574
KEQQITIRSSGGLSEDEIEKMVKEAELHAQ+D ERK LIDIRN ADTTIYSIEKSLGEYR
Sbjct: 538 KEQQITIRSSGGLSEDEIEKMVKEAELHAQKDQERKTLIDIRNSADTTIYSIEKSLGEYR 597
Query: 575 EKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHM-AGGSGGGAASG 633
EKIPSE AKEIEDAV+DLRKAM DNVD+IKSKLDAANKAVSKIG+HM G SGG +A G
Sbjct: 598 EKIPSETAKEIEDAVSDLRKAMSGDNVDEIKSKLDAANKAVSKIGEHMSGGSSGGSSAGG 657
Query: 634 GSQGGEQTPEAEYEEVKK 651
GG+Q PEAEYEEVKK
Sbjct: 658 SQGGGDQAPEAEYEEVKK 675
|
Source: Phaseolus vulgaris Species: Phaseolus vulgaris Genus: Phaseolus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225429228|ref|XP_002263457.1| PREDICTED: heat shock 70 kDa protein, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1135 bits (2935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 586/681 (86%), Positives = 616/681 (90%), Gaps = 32/681 (4%)
Query: 1 MATSVLLRQLRRRDVASAPISAYKCFTSNIKPSWAPSNLGKSWASLTRPFSSKPAGNDII 60
MA SVLLR LRRR++AS +SAY+ T N K SW S G WASL R FSSKPAGND+I
Sbjct: 1 MAASVLLRSLRRRELASPSLSAYRALTGNTKSSWNTSPTG--WASLARAFSSKPAGNDVI 58
Query: 61 GIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNT 120
GIDLGTTNSCVA+MEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNT
Sbjct: 59 GIDLGTTNSCVAVMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNT 118
Query: 121 LFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKE 180
+FGTKRLIGR+FDDPQTQKEM+MV YKIVRAPNGDAWVEANGQQYSPSQIGAF+LTKMKE
Sbjct: 119 VFGTKRLIGRRFDDPQTQKEMKMVPYKIVRAPNGDAWVEANGQQYSPSQIGAFILTKMKE 178
Query: 181 TAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKE 240
TAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRI+GLDVQRIINEPTAA+LSYG+NNKE
Sbjct: 179 TAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRISGLDVQRIINEPTAAALSYGLNNKE 238
Query: 241 GLIAVFDLGGGTFDVSILEISNGVFE-----------------------------DEGID 271
GLIAVFDLGGGTFDVSILEISNGVFE EGID
Sbjct: 239 GLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGID 298
Query: 272 LSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNN 331
LSKDRLALQRLREAAEKAKIELSST+QT+INLPFITADASGAKHLNITLTRSKFE+LVN+
Sbjct: 299 LSKDRLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFESLVNH 358
Query: 332 LIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAV 391
LIERTR PCK+CLKDA I+TK+VDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAV
Sbjct: 359 LIERTRGPCKSCLKDAGISTKEVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAV 418
Query: 392 ALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD 451
A+GAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD
Sbjct: 419 AMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD 478
Query: 452 NQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDK 511
NQTQVGIKVLQGEREMASDNK LGEFEL+GIPPAPRGMPQIEVTFDIDANGIVTVSAKDK
Sbjct: 479 NQTQVGIKVLQGEREMASDNKLLGEFELMGIPPAPRGMPQIEVTFDIDANGIVTVSAKDK 538
Query: 512 ATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLG 571
ATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQ+D ERKALIDIRN ADTTIYS+EKSLG
Sbjct: 539 ATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQKDQERKALIDIRNSADTTIYSVEKSLG 598
Query: 572 EYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMA-GGSGGGA 630
EYR+KIPSEVA EIE AVADLRKAM DN+++IK+KLDAANKAVSKIGQHMA G GG
Sbjct: 599 EYRDKIPSEVATEIESAVADLRKAMSGDNIEEIKAKLDAANKAVSKIGQHMAGGSGGGST 658
Query: 631 ASGGSQGGEQTPEAEYEEVKK 651
GGSQGG+Q PEAEYEEVKK
Sbjct: 659 PGGGSQGGDQAPEAEYEEVKK 679
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359496771|ref|XP_002272173.2| PREDICTED: heat shock 70 kDa protein, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1125 bits (2911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/682 (82%), Positives = 605/682 (88%), Gaps = 31/682 (4%)
Query: 1 MATSVLLRQLRRRDVASAPISAYKCFTSNIKPSWAPSNLGKSWASLTRPFSSKPAGNDII 60
MATSVLLR L+RRD+ S+ ++AY+ T N K S + S + WAS RPFSSKPAGND+I
Sbjct: 1 MATSVLLRCLKRRDLQSSSLAAYRSLTGNAKTSVSTSPAVQKWASYIRPFSSKPAGNDVI 60
Query: 61 GIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNT 120
GIDLGTTNSCV++MEGKN KVIENSEG+RTTPSVVA NQKGEL+VGTPAKRQAVTNPTNT
Sbjct: 61 GIDLGTTNSCVSVMEGKNAKVIENSEGARTTPSVVAINQKGELIVGTPAKRQAVTNPTNT 120
Query: 121 LFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKE 180
+FGTKRLIGR+FDDPQTQKEM+MV +KIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKE
Sbjct: 121 VFGTKRLIGRRFDDPQTQKEMKMVPFKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKE 180
Query: 181 TAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKE 240
TAE+YLGK+VSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAA+LSYG+NNKE
Sbjct: 181 TAEAYLGKTVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGLNNKE 240
Query: 241 GLIAVFDLGGGTFDVSILEISNGVFE-----------------------------DEGID 271
GLIAVFDLGGGTFDVSILEISNGVFE EGID
Sbjct: 241 GLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTEGID 300
Query: 272 LSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNN 331
L+KDRLALQRLREAAEKAKIELSST+QTDINLPFITADASGAKHLNITLTRSKFE LV+
Sbjct: 301 LTKDRLALQRLREAAEKAKIELSSTSQTDINLPFITADASGAKHLNITLTRSKFEALVDK 360
Query: 332 LIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAV 391
LIERTR PCK+CLKDA I+ K+VDEVLLVGGMTRVPKVQEVV+EIFGKSPSKGVNPDEAV
Sbjct: 361 LIERTRNPCKSCLKDAGISVKEVDEVLLVGGMTRVPKVQEVVAEIFGKSPSKGVNPDEAV 420
Query: 392 ALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD 451
A+GAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD
Sbjct: 421 AMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD 480
Query: 452 NQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDK 511
NQTQVG+KVLQGEREMA+DNK LGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDK
Sbjct: 481 NQTQVGVKVLQGEREMATDNKLLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDK 540
Query: 512 ATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLG 571
+TGKEQQITIRSSGGLS+DEIEKMVKEAELHAQRD ERKALIDIRN ADTTIYSIEKSL
Sbjct: 541 STGKEQQITIRSSGGLSDDEIEKMVKEAELHAQRDQERKALIDIRNSADTTIYSIEKSLD 600
Query: 572 EYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHM--AGGSGGG 629
EYR+KIP+EVAKEIE AVADLR AM +N+D+IK+KLDAANKAVSKIGQHM G
Sbjct: 601 EYRDKIPAEVAKEIEAAVADLRDAMQKENIDEIKAKLDAANKAVSKIGQHMSGGSGGAAS 660
Query: 630 AASGGSQGGEQTPEAEYEEVKK 651
S GS +QTPEAEYE+ KK
Sbjct: 661 GGSEGSTSSDQTPEAEYEQAKK 682
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524786|ref|XP_003531009.1| PREDICTED: heat shock 70 kDa protein, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1124 bits (2907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/664 (85%), Positives = 605/664 (91%), Gaps = 33/664 (4%)
Query: 17 SAPISAYKCFTSNIKPSWAPSNLGKSWASLTRPFSSKPAGNDIIGIDLGTTNSCVALMEG 76
S+ +SA++ TS K S+ +G WASL+RPFSSKPAGND+IGIDLGTTNSCV++MEG
Sbjct: 18 SSSLSAFRSLTSGTKTSY----VGNKWASLSRPFSSKPAGNDVIGIDLGTTNSCVSVMEG 73
Query: 77 KNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQ 136
KNPKVIENSEG+RTTPSVVAFNQK ELLVGTPAKRQAVTNPTNTLFGTKRLIGR+FDD Q
Sbjct: 74 KNPKVIENSEGARTTPSVVAFNQKAELLVGTPAKRQAVTNPTNTLFGTKRLIGRRFDDSQ 133
Query: 137 TQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVIT 196
TQKEM+MV YKIV+APNGDAWVEANGQQYSPSQ+GAFVLTKMKETAESYLGKSVSKAVIT
Sbjct: 134 TQKEMKMVPYKIVKAPNGDAWVEANGQQYSPSQVGAFVLTKMKETAESYLGKSVSKAVIT 193
Query: 197 VPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVS 256
VPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAA+LSYGMNNKEGLIAVFDLGGGTFDVS
Sbjct: 194 VPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVS 253
Query: 257 ILEISNGVFE-----------------------------DEGIDLSKDRLALQRLREAAE 287
ILEISNGVFE E IDLSKD+LALQRLREAAE
Sbjct: 254 ILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKRTENIDLSKDKLALQRLREAAE 313
Query: 288 KAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDA 347
KAKIELSST+QT+INLPFITADASGAKHLNITLTRSKFE LVN+LIERT+APCK+CLKDA
Sbjct: 314 KAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNHLIERTKAPCKSCLKDA 373
Query: 348 NITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVK 407
N++ K+VDEVLLVGGMTRVPKVQEVVS IFGKSPSKGVNPDEAVA+GAAIQGGILRGDVK
Sbjct: 374 NVSIKEVDEVLLVGGMTRVPKVQEVVSAIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVK 433
Query: 408 ELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREM 467
ELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREM
Sbjct: 434 ELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREM 493
Query: 468 ASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGL 527
A DNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDK+TGKEQQITIRSSGGL
Sbjct: 494 AVDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGGL 553
Query: 528 SEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIED 587
SEDEI+KMVKEAELHAQ+D ERKALIDIRN ADTTIYSIEKSLGEYR+KIPSEVAKEIED
Sbjct: 554 SEDEIDKMVKEAELHAQKDQERKALIDIRNSADTTIYSIEKSLGEYRDKIPSEVAKEIED 613
Query: 588 AVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAGGSGGGAASGGSQGGEQTPEAEYE 647
AV+DLR AM DN D+IK+KLDAANKAVSKIG+HM+GGS G +++GGSQGGEQ PEAEYE
Sbjct: 614 AVSDLRTAMAGDNADEIKAKLDAANKAVSKIGEHMSGGSSGSSSAGGSQGGEQAPEAEYE 673
Query: 648 EVKK 651
EVKK
Sbjct: 674 EVKK 677
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 651 | ||||||
| TAIR|locus:2144801 | 682 | MTHSC70-2 "mitochondrial HSO70 | 0.680 | 0.649 | 0.744 | 1.9e-287 | |
| TAIR|locus:2121022 | 682 | mtHsc70-1 "mitochondrial heat | 0.615 | 0.587 | 0.778 | 1.8e-271 | |
| GENEDB_PFALCIPARUM|PF11_0351 | 663 | PF11_0351 "heat shock protein | 0.576 | 0.565 | 0.619 | 7.2e-202 | |
| UNIPROTKB|Q8II24 | 663 | PF11_0351 "Heat shock protein | 0.576 | 0.565 | 0.619 | 7.2e-202 | |
| WB|WBGene00002010 | 657 | hsp-6 [Caenorhabditis elegans | 0.543 | 0.538 | 0.638 | 9.2e-202 | |
| ZFIN|ZDB-GENE-030828-12 | 682 | hspa9 "heat shock protein 9" [ | 0.569 | 0.543 | 0.605 | 5.1e-201 | |
| UNIPROTKB|F1NZ86 | 675 | HSPA9 "Stress-70 protein, mito | 0.545 | 0.525 | 0.629 | 1.1e-200 | |
| UNIPROTKB|F1RGJ3 | 679 | HSPA9 "Stress-70 protein, mito | 0.569 | 0.546 | 0.597 | 1.3e-200 | |
| UNIPROTKB|E2RAU5 | 679 | HSPA9 "Stress-70 protein, mito | 0.569 | 0.546 | 0.597 | 1.7e-200 | |
| UNIPROTKB|Q5ZM98 | 675 | HSPA9 "Stress-70 protein, mito | 0.545 | 0.525 | 0.626 | 4.5e-200 |
| TAIR|locus:2144801 MTHSC70-2 "mitochondrial HSO70 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1625 (577.1 bits), Expect = 1.9e-287, Sum P(2) = 1.9e-287
Identities = 332/446 (74%), Positives = 374/446 (83%)
Query: 209 TKDAGRIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFED- 267
T G IA D+ + + +S G+ + LGG FD ++L+ F+
Sbjct: 237 TNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKTT 296
Query: 268 EGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFET 327
EGIDL+KDRLALQRLREAAEKAKIELSST+QT+INLPFITADASGAKH NITLTRS+FET
Sbjct: 297 EGIDLAKDRLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHFNITLTRSRFET 356
Query: 328 LVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNP 387
LVN+LIERTR PCKNCLKDA I+ K+VDEVLLVGGMTRVPKVQ +V+EIFGKSPSKGVNP
Sbjct: 357 LVNHLIERTRDPCKNCLKDAGISAKEVDEVLLVGGMTRVPKVQSIVAEIFGKSPSKGVNP 416
Query: 388 DEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFS 447
DEAVA+GAA+QGGILRGDVKELLLLDVTPLSLGIETLGG+FTRLI RNTTIPTKKSQVFS
Sbjct: 417 DEAVAMGAALQGGILRGDVKELLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQVFS 476
Query: 448 TAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVS 507
TAADNQTQVGI+VLQGEREMA+DNK LGEF+LVGIPP+PRG+PQIEVTFDIDANGIVTVS
Sbjct: 477 TAADNQTQVGIRVLQGEREMATDNKLLGEFDLVGIPPSPRGVPQIEVTFDIDANGIVTVS 536
Query: 508 AKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIE 567
AKDK TGK QQITIRSSGGLSED+I+KMV+EAELHAQ+D ERK LID +N ADTTIYSIE
Sbjct: 537 AKDKTTGKVQQITIRSSGGLSEDDIQKMVREAELHAQKDKERKELIDTKNTADTTIYSIE 596
Query: 568 KSLGEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMXXXXX 627
KSLGEYREKIPSE+AKEIEDAVADLR A D++++IK+K++AANKAVSKIG+HM
Sbjct: 597 KSLGEYREKIPSEIAKEIEDAVADLRSASSGDDLNEIKAKIEAANKAVSKIGEHMSGGSG 656
Query: 628 XXXX--XXXXXXXEQTPEAEYEEVKK 651
+Q PEAEYEEVKK
Sbjct: 657 GGSAPGGGSEGGSDQAPEAEYEEVKK 682
|
|
| TAIR|locus:2121022 mtHsc70-1 "mitochondrial heat shock protein 70-1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1570 (557.7 bits), Expect = 1.8e-271, Sum P(2) = 1.8e-271
Identities = 316/406 (77%), Positives = 351/406 (86%)
Query: 248 LGGGTFDVSILE-ISNGVFEDEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFI 306
LGG FD ++LE + N + IDL+KD LALQRLREAAEKAKIELSSTTQT+INLPFI
Sbjct: 271 LGGEDFDNTLLEYLVNEFKRSDNIDLTKDNLALQRLREAAEKAKIELSSTTQTEINLPFI 330
Query: 307 TADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRV 366
TADASGAKHLNITLTRSKFE LV LIERTR+PC+NCLKDA +T K+VDEVLLVGGMTRV
Sbjct: 331 TADASGAKHLNITLTRSKFEGLVGKLIERTRSPCQNCLKDAGVTIKEVDEVLLVGGMTRV 390
Query: 367 PKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGG 426
PKVQE+VSEIFGKSP KGVNPDEAVA+GAAIQGGILRGDVK+LLLLDV PLSLGIETLG
Sbjct: 391 PKVQEIVSEIFGKSPCKGVNPDEAVAMGAAIQGGILRGDVKDLLLLDVVPLSLGIETLGA 450
Query: 427 IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAP 486
+FT+LI RNTTIPTKKSQVFSTAADNQ QVGIKVLQGEREMA+DNK LGEF+LVGIPPAP
Sbjct: 451 VFTKLIPRNTTIPTKKSQVFSTAADNQMQVGIKVLQGEREMAADNKVLGEFDLVGIPPAP 510
Query: 487 RGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRD 546
RGMPQIEVTFDIDANGI TVSAKDKATGKEQ ITIRSSGGLS+DEI +MVKEAEL+AQ+D
Sbjct: 511 RGMPQIEVTFDIDANGITTVSAKDKATGKEQNITIRSSGGLSDDEINRMVKEAELNAQKD 570
Query: 547 NERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKS 606
E+K LID+RN ADTTIYS+EKSL EYREKIP+E+A EIE AV+DLR AM ++V+DIK+
Sbjct: 571 QEKKQLIDLRNSADTTIYSVEKSLSEYREKIPAEIASEIETAVSDLRTAMAGEDVEDIKA 630
Query: 607 KLDAANKAVSKIGQHMXXXXXXXXXXXXX----XXXEQTPEAEYEE 648
K++AANKAVSKIG+HM EQTPEAE+EE
Sbjct: 631 KVEAANKAVSKIGEHMSKGSGSSGSDGSSGEGTSGTEQTPEAEFEE 676
|
|
| GENEDB_PFALCIPARUM|PF11_0351 PF11_0351 "heat shock protein hsp70 homologue" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 1180 (420.4 bits), Expect = 7.2e-202, Sum P(2) = 7.2e-202
Identities = 233/376 (61%), Positives = 295/376 (78%)
Query: 248 LGGGTFDVSILEISNGVFED-EGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFI 306
LGG FD ILE F+ E IDL D+LALQRLREAAE AKIELSS TQT+INLPFI
Sbjct: 261 LGGEDFDQRILEYFISEFKKKENIDLKNDKLALQRLREAAETAKIELSSKTQTEINLPFI 320
Query: 307 TADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRV 366
TA+ +G KHL I LTR+K E L ++L++ T PC+ C+KDA++ ++++E++LVGGMTR+
Sbjct: 321 TANQTGPKHLQIKLTRAKLEELCHDLLKGTIEPCEKCIKDADVKKEEINEIILVGGMTRM 380
Query: 367 PKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGG 426
PKV + V +IF +PSKGVNPDEAVALGAAIQGG+L+G++K+LLLLDV PLSLGIETLGG
Sbjct: 381 PKVTDTVKQIFQNNPSKGVNPDEAVALGAAIQGGVLKGEIKDLLLLDVIPLSLGIETLGG 440
Query: 427 IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAP 486
+FT+LINRNTTIPTKKSQ+FSTAADNQTQV IKV QGEREMASDNK LG F+LVGIPPAP
Sbjct: 441 VFTKLINRNTTIPTKKSQIFSTAADNQTQVSIKVFQGEREMASDNKLLGSFDLVGIPPAP 500
Query: 487 RGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRD 546
RG+PQIEVTFD+DAN I+ +SA DK T K+QQITI+SSGGLS++EIEKMV+EAEL+ ++D
Sbjct: 501 RGVPQIEVTFDVDANAIINISAIDKMTNKKQQITIQSSGGLSKEEIEKMVQEAELNREKD 560
Query: 547 NERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKS 606
+K L D +N+A+T IYS EK L ++++KI E+ + LR+ + ++++D IK
Sbjct: 561 QLKKNLTDSKNEAETLIYSSEKQLEDFKDKISDSDKDELRQKITVLREKLTSEDLDSIKD 620
Query: 607 KLDAANKAVSKIGQHM 622
+ I Q M
Sbjct: 621 ATKQLQEKSWAISQEM 636
|
|
| UNIPROTKB|Q8II24 PF11_0351 "Heat shock protein hsp70 homologue" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 1180 (420.4 bits), Expect = 7.2e-202, Sum P(2) = 7.2e-202
Identities = 233/376 (61%), Positives = 295/376 (78%)
Query: 248 LGGGTFDVSILEISNGVFED-EGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFI 306
LGG FD ILE F+ E IDL D+LALQRLREAAE AKIELSS TQT+INLPFI
Sbjct: 261 LGGEDFDQRILEYFISEFKKKENIDLKNDKLALQRLREAAETAKIELSSKTQTEINLPFI 320
Query: 307 TADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRV 366
TA+ +G KHL I LTR+K E L ++L++ T PC+ C+KDA++ ++++E++LVGGMTR+
Sbjct: 321 TANQTGPKHLQIKLTRAKLEELCHDLLKGTIEPCEKCIKDADVKKEEINEIILVGGMTRM 380
Query: 367 PKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGG 426
PKV + V +IF +PSKGVNPDEAVALGAAIQGG+L+G++K+LLLLDV PLSLGIETLGG
Sbjct: 381 PKVTDTVKQIFQNNPSKGVNPDEAVALGAAIQGGVLKGEIKDLLLLDVIPLSLGIETLGG 440
Query: 427 IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAP 486
+FT+LINRNTTIPTKKSQ+FSTAADNQTQV IKV QGEREMASDNK LG F+LVGIPPAP
Sbjct: 441 VFTKLINRNTTIPTKKSQIFSTAADNQTQVSIKVFQGEREMASDNKLLGSFDLVGIPPAP 500
Query: 487 RGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRD 546
RG+PQIEVTFD+DAN I+ +SA DK T K+QQITI+SSGGLS++EIEKMV+EAEL+ ++D
Sbjct: 501 RGVPQIEVTFDVDANAIINISAIDKMTNKKQQITIQSSGGLSKEEIEKMVQEAELNREKD 560
Query: 547 NERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKS 606
+K L D +N+A+T IYS EK L ++++KI E+ + LR+ + ++++D IK
Sbjct: 561 QLKKNLTDSKNEAETLIYSSEKQLEDFKDKISDSDKDELRQKITVLREKLTSEDLDSIKD 620
Query: 607 KLDAANKAVSKIGQHM 622
+ I Q M
Sbjct: 621 ATKQLQEKSWAISQEM 636
|
|
| WB|WBGene00002010 hsp-6 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 1149 (409.5 bits), Expect = 9.2e-202, Sum P(2) = 9.2e-202
Identities = 228/357 (63%), Positives = 282/357 (78%)
Query: 248 LGGGTFDVSILEISNGVFEDE-GIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFI 306
LGG FD +++ G F+ E G+DL+KD A+QRLREAAEKAK ELSSTTQTDINLP+I
Sbjct: 252 LGGEDFDHALVHHLVGEFKKEQGVDLTKDPQAMQRLREAAEKAKCELSSTTQTDINLPYI 311
Query: 307 TADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRV 366
T D SG KHLN+ LTR+KFE +V +LI+RT PC+ L DA + + + +VLLVGGM+R+
Sbjct: 312 TMDQSGPKHLNLKLTRAKFEQIVGDLIKRTIEPCRKALHDAEVKSSQIADVLLVGGMSRM 371
Query: 367 PKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGG 426
PKVQ V EIFGK PSK VNPDEAVA+GAAIQG +L GDV ++LLLDVTPLSLGIETLGG
Sbjct: 372 PKVQATVQEIFGKVPSKAVNPDEAVAMGAAIQGAVLAGDVTDVLLLDVTPLSLGIETLGG 431
Query: 427 IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAP 486
I T+LI RNTTIPTKKSQVFSTAAD QTQV IKV QGEREMA+ NK LG+F LVGIPPAP
Sbjct: 432 IMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAP 491
Query: 487 RGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRD 546
RG+PQ+EVTFDIDANGIV VSA+D+ TGKEQQI I+SSGGLS+D+IE M+KEAE +A D
Sbjct: 492 RGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQIENMIKEAEKNAAED 551
Query: 547 NERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMGADNVDD 603
+RK L+++ NQA+ I+ E + E+ +++P + + + +AD +K + DN D+
Sbjct: 552 AKRKELVEVINQAEGIIHDTEAKMTEFADQLPKDECEALRTKIADTKKIL--DNKDN 606
|
|
| ZFIN|ZDB-GENE-030828-12 hspa9 "heat shock protein 9" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1153 (410.9 bits), Expect = 5.1e-201, Sum P(2) = 5.1e-201
Identities = 227/375 (60%), Positives = 294/375 (78%)
Query: 248 LGGGTFDVSILEISNGVFEDE-GIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFI 306
LGG FD +L F+ E G+DL KD +ALQR+REAAEKAK ELSS+ QTDINLP++
Sbjct: 276 LGGEGFDQHLLRHIVKEFKKESGVDLMKDNMALQRVREAAEKAKCELSSSLQTDINLPYL 335
Query: 307 TADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRV 366
T DASG KHLN+ LTRS+FE +V +LI RT APC+ ++DA ++ D+ EVLLVGGMTR+
Sbjct: 336 TMDASGPKHLNMKLTRSQFEGIVADLIRRTVAPCQKAMQDAEVSKSDIGEVLLVGGMTRM 395
Query: 367 PKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGG 426
PKVQ+ V ++FG++PSK VNPDEAVA+GAAIQGG+L GDV ++LLLDVTPLSLGIETLGG
Sbjct: 396 PKVQQTVQDLFGRAPSKSVNPDEAVAIGAAIQGGVLAGDVTDVLLLDVTPLSLGIETLGG 455
Query: 427 IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAP 486
+FT+LINRNTTIPTKKSQVFSTAAD QTQV IKV QGEREMA+DNK LG+F LVGIPPAP
Sbjct: 456 VFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMATDNKVLGQFTLVGIPPAP 515
Query: 487 RGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRD 546
RG+PQIEVTFDIDANGIV VSAKDK TG+EQQI I+SSGGLS+D+IE MVK AE +A+ D
Sbjct: 516 RGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDDIENMVKNAEKYAEED 575
Query: 547 NERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMGADNVD---D 603
RK ++ N A+ ++ E + E+++++P++ ++++ ++ +R+ + + + +
Sbjct: 576 RRRKDRVEAVNMAEGIVHDTESKMEEFKDQLPADECNKLKEEISKVRELLSRKDTETGEN 635
Query: 604 IKSKLDAANKAVSKI 618
IK + +A K+
Sbjct: 636 IKQAATSLQQASLKL 650
|
|
| UNIPROTKB|F1NZ86 HSPA9 "Stress-70 protein, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1162 (414.1 bits), Expect = 1.1e-200, Sum P(2) = 1.1e-200
Identities = 224/356 (62%), Positives = 290/356 (81%)
Query: 248 LGGGTFDVSILEISNGVFEDE-GIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFI 306
LGG FD ++L+ F+ E G+DL+KD +ALQR+REA+EKAK ELSS+ QTDINLP++
Sbjct: 275 LGGEDFDQALLQYIVKEFKRETGVDLTKDNMALQRVREASEKAKCELSSSVQTDINLPYL 334
Query: 307 TADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRV 366
T DASG KHLN+ L+RS+FE +V +LI+RT APC+ ++DA ++ D+ EV+LVGGMTR+
Sbjct: 335 TMDASGPKHLNMKLSRSQFEGIVADLIKRTVAPCQKAMQDAEVSKSDIGEVILVGGMTRM 394
Query: 367 PKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGG 426
PKVQ+ V ++FG++PSK VNPDEAVA+GAAIQGG+L GDV ++LLLDVTPLSLGIETLGG
Sbjct: 395 PKVQQTVQDLFGRAPSKAVNPDEAVAIGAAIQGGVLAGDVTDVLLLDVTPLSLGIETLGG 454
Query: 427 IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAP 486
+FT+LINRNTTIPTKKSQVFSTAAD QTQV IKV QGEREMASDNK LG+F LVGIPPAP
Sbjct: 455 VFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMASDNKLLGQFTLVGIPPAP 514
Query: 487 RGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRD 546
RG+PQIEVTFDIDANGIV VSAKDK TG+EQQI I+SSGGLS+DEIE MVK AE +A+ D
Sbjct: 515 RGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDEIENMVKNAEKYAEED 574
Query: 547 NERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMGADNVD 602
RK ++ N A+ I+ E + E+++++P++ ++++ +A +R+ + + +
Sbjct: 575 RRRKERVEAVNLAEGIIHDTESKMEEFKDQLPADECNKLKEEIAKMRELLARKDTE 630
|
|
| UNIPROTKB|F1RGJ3 HSPA9 "Stress-70 protein, mitochondrial" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1156 (412.0 bits), Expect = 1.3e-200, Sum P(2) = 1.3e-200
Identities = 224/375 (59%), Positives = 297/375 (79%)
Query: 248 LGGGTFDVSILEISNGVFEDE-GIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFI 306
LGG FD ++L F+ E G+DL+KD +ALQR+REAAEKAK ELSS+ QTDINLP++
Sbjct: 273 LGGEDFDQALLRYIVKEFKRETGVDLTKDNMALQRVREAAEKAKCELSSSVQTDINLPYL 332
Query: 307 TADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRV 366
T DASG KHLN+ LTR++FE +V +LI+RT APC+ ++DA ++ D+ EV+LVGGMTR+
Sbjct: 333 TMDASGPKHLNMKLTRAQFEGIVTDLIKRTIAPCQKAMQDAEVSKSDIGEVILVGGMTRM 392
Query: 367 PKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGG 426
PKVQ+ V ++FG++PSK VNPDEAVA+GAAIQGG+L GDV ++LLLDVTPLSLGIETLGG
Sbjct: 393 PKVQQTVQDLFGRAPSKAVNPDEAVAIGAAIQGGVLAGDVTDVLLLDVTPLSLGIETLGG 452
Query: 427 IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAP 486
+FT+LINRNTTIPTKKSQVFSTAAD QTQV IKV QGEREMA DNK LG+F LVGIPPAP
Sbjct: 453 VFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLVGIPPAP 512
Query: 487 RGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRD 546
RG+PQIEVTFDIDANGIV VSAKDK TG+EQQI I+SSGGLS+D+IE MVK AE +A+ D
Sbjct: 513 RGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDDIENMVKNAEKYAEED 572
Query: 547 NERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMG---ADNVDD 603
+K ++ N A+ I+ E + E+++++P++ ++++ ++ +R+ + ++ ++
Sbjct: 573 RRKKERVEAVNMAEGIIHDTESKMEEFKDQLPADECNKLKEEISKMRELLSRKDSETGEN 632
Query: 604 IKSKLDAANKAVSKI 618
I+ + +A K+
Sbjct: 633 IRQAASSLQQASLKL 647
|
|
| UNIPROTKB|E2RAU5 HSPA9 "Stress-70 protein, mitochondrial" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1154 (411.3 bits), Expect = 1.7e-200, Sum P(2) = 1.7e-200
Identities = 224/375 (59%), Positives = 296/375 (78%)
Query: 248 LGGGTFDVSILEISNGVFEDE-GIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFI 306
LGG FD ++L F+ E G+DL+KD +ALQR+REAAEKAK ELSS+ QTDINLP++
Sbjct: 273 LGGEDFDQALLRHIVKEFKRETGVDLTKDNMALQRVREAAEKAKCELSSSVQTDINLPYL 332
Query: 307 TADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRV 366
T DASG KHLN+ LTR++FE +V +LI RT APC+ ++DA ++ D+ EV+LVGGMTR+
Sbjct: 333 TMDASGPKHLNMKLTRAQFEGIVTDLIRRTIAPCQKAMQDAEVSKSDIGEVILVGGMTRM 392
Query: 367 PKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGG 426
PKVQ+ V ++FG++PSK VNPDEAVA+GAAIQGG+L GDV ++LLLDVTPLSLGIETLGG
Sbjct: 393 PKVQQTVQDLFGRAPSKAVNPDEAVAIGAAIQGGVLAGDVTDVLLLDVTPLSLGIETLGG 452
Query: 427 IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAP 486
+FT+LINRNTTIPTKKSQVFSTAAD QTQV IKV QGEREMA DNK LG+F L+GIPPAP
Sbjct: 453 VFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAP 512
Query: 487 RGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRD 546
RG+PQIEVTFDIDANGIV VSAKDK TG+EQQI I+SSGGLS+D+IE MVK AE +A+ D
Sbjct: 513 RGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDDIENMVKNAEKYAEED 572
Query: 547 NERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMG---ADNVDD 603
+K ++ N A+ I+ E + E+++++P+E ++++ ++ +R+ + ++ ++
Sbjct: 573 RRKKERVEAVNMAEGIIHDTETKMEEFKDQLPAEECNKLKEEISKMRELLARKDSETGEN 632
Query: 604 IKSKLDAANKAVSKI 618
I+ + +A K+
Sbjct: 633 IRQAASSLQQASLKL 647
|
|
| UNIPROTKB|Q5ZM98 HSPA9 "Stress-70 protein, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1156 (412.0 bits), Expect = 4.5e-200, Sum P(2) = 4.5e-200
Identities = 223/356 (62%), Positives = 289/356 (81%)
Query: 248 LGGGTFDVSILEISNGVFEDE-GIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFI 306
LGG FD ++L+ F+ E +DL+KD +ALQR+REA+EKAK ELSS+ QTDINLP++
Sbjct: 275 LGGEDFDQALLQYIVKEFKRETSVDLTKDNMALQRVREASEKAKCELSSSVQTDINLPYL 334
Query: 307 TADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRV 366
T DASG KHLN+ L+RS+FE +V +LI+RT APC+ ++DA ++ D+ EV+LVGGMTR+
Sbjct: 335 TMDASGPKHLNMKLSRSQFEGIVADLIKRTVAPCQKAMQDAEVSKSDIGEVILVGGMTRM 394
Query: 367 PKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGG 426
PKVQ+ V ++FG++PSK VNPDEAVA+GAAIQGG+L GDV ++LLLDVTPLSLGIETLGG
Sbjct: 395 PKVQQTVQDLFGRAPSKAVNPDEAVAIGAAIQGGVLAGDVTDVLLLDVTPLSLGIETLGG 454
Query: 427 IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAP 486
+FT+LINRNTTIPTKKSQVFSTAAD QTQV IKV QGEREMASDNK LG+F LVGIPPAP
Sbjct: 455 VFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMASDNKLLGQFTLVGIPPAP 514
Query: 487 RGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRD 546
RG+PQIEVTFDIDANGIV VSAKDK TG+EQQI I+SSGGLS+DEIE MVK AE +A+ D
Sbjct: 515 RGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDEIENMVKNAEKYAEED 574
Query: 547 NERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMGADNVD 602
RK ++ N A+ I+ E + E+++++P++ ++++ +A +R+ + + +
Sbjct: 575 RRRKERVEAVNLAEGIIHDTESKMEEFKDQLPADECNKLKEEIAKMRELLARKDTE 630
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| A8IPT1 | DNAK_AZOC5 | No assigned EC number | 0.6344 | 0.9062 | 0.9350 | yes | no |
| Q98DD1 | DNAK_RHILO | No assigned EC number | 0.6548 | 0.8663 | 0.8840 | yes | no |
| A5FZ19 | DNAK_ACICJ | No assigned EC number | 0.6256 | 0.9078 | 0.9307 | yes | no |
| Q3SW76 | DNAK_NITWN | No assigned EC number | 0.6582 | 0.8663 | 0.8952 | yes | no |
| Q6G1F9 | DNAK_BARQU | No assigned EC number | 0.6334 | 0.9078 | 0.9380 | yes | no |
| Q08276 | HSP7M_SOLTU | No assigned EC number | 0.8111 | 0.9984 | 0.9530 | N/A | no |
| P94317 | DNAK_BRAJA | No assigned EC number | 0.6515 | 0.8663 | 0.8909 | yes | no |
| B1ZGR1 | DNAK_METPB | No assigned EC number | 0.6488 | 0.8725 | 0.8888 | yes | no |
| Q21CI2 | DNAK_RHOPB | No assigned EC number | 0.6447 | 0.8663 | 0.8924 | yes | no |
| A9ILH7 | DNAK_BART1 | No assigned EC number | 0.6318 | 0.9078 | 0.9380 | yes | no |
| B2IBR4 | DNAK_BEII9 | No assigned EC number | 0.6561 | 0.8801 | 0.9066 | yes | no |
| B3Q972 | DNAK_RHOPT | No assigned EC number | 0.6531 | 0.8663 | 0.8938 | yes | no |
| A0L4Z2 | DNAK_MAGSM | No assigned EC number | 0.6464 | 0.8663 | 0.8637 | yes | no |
| A1UUC3 | DNAK_BARBK | No assigned EC number | 0.6292 | 0.9078 | 0.9366 | yes | no |
| Q01899 | HSP7M_PHAVU | No assigned EC number | 0.8436 | 0.9892 | 0.9540 | N/A | no |
| Q2RNE6 | DNAK_RHORT | No assigned EC number | 0.6142 | 0.9078 | 0.9248 | yes | no |
| Q2J320 | DNAK_RHOP2 | No assigned EC number | 0.6498 | 0.8663 | 0.8909 | yes | no |
| Q5NPS6 | DNAK_ZYMMO | No assigned EC number | 0.6296 | 0.8663 | 0.8881 | yes | no |
| P37900 | HSP7M_PEA | No assigned EC number | 0.8360 | 0.9892 | 0.9540 | N/A | no |
| B6IVA4 | DNAK_RHOCS | No assigned EC number | 0.6422 | 0.9078 | 0.9234 | yes | no |
| Q39PT7 | DNAK_GEOMG | No assigned EC number | 0.6212 | 0.9093 | 0.9278 | yes | no |
| Q3ZCH0 | GRP75_BOVIN | No assigned EC number | 0.5959 | 0.9185 | 0.8807 | yes | no |
| A7HZ39 | DNAK_PARL1 | No assigned EC number | 0.6304 | 0.9078 | 0.9248 | yes | no |
| Q5R511 | GRP75_PONAB | No assigned EC number | 0.5927 | 0.9185 | 0.8807 | yes | no |
| A9W6R7 | DNAK_METEP | No assigned EC number | 0.6236 | 0.9078 | 0.9248 | yes | no |
| B6JCI3 | DNAK_OLICO | No assigned EC number | 0.6531 | 0.8663 | 0.8854 | yes | no |
| P38647 | GRP75_MOUSE | No assigned EC number | 0.5959 | 0.9185 | 0.8807 | yes | no |
| Q2VYT1 | DNAK_MAGSA | No assigned EC number | 0.6683 | 0.8663 | 0.8785 | yes | no |
| Q1QRU1 | DNAK_NITHX | No assigned EC number | 0.6515 | 0.8663 | 0.8924 | yes | no |
| B8IHL3 | DNAK_METNO | No assigned EC number | 0.6288 | 0.9078 | 0.9277 | yes | no |
| Q9LDZ0 | HSP7J_ARATH | No assigned EC number | 0.8005 | 1.0 | 0.9545 | yes | no |
| B7KSZ4 | DNAK_METC4 | No assigned EC number | 0.6236 | 0.9078 | 0.9248 | yes | no |
| B1LZ51 | DNAK_METRJ | No assigned EC number | 0.6230 | 0.9078 | 0.9263 | yes | no |
| B8EIP9 | DNAK_METSB | No assigned EC number | 0.6382 | 0.9078 | 0.9321 | yes | no |
| Q8GUM2 | HSP7I_ARATH | No assigned EC number | 0.7650 | 0.9877 | 0.9428 | no | no |
| Q13E60 | DNAK_RHOPS | No assigned EC number | 0.6447 | 0.8663 | 0.8909 | yes | no |
| Q4FNP9 | DNAK_PELUB | No assigned EC number | 0.6380 | 0.8663 | 0.8717 | yes | no |
| P38646 | GRP75_HUMAN | No assigned EC number | 0.5852 | 0.9278 | 0.8895 | yes | no |
| Q6G554 | DNAK_BARHE | No assigned EC number | 0.6548 | 0.8663 | 0.8952 | yes | no |
| B0UR84 | DNAK_METS4 | No assigned EC number | 0.6464 | 0.8663 | 0.8826 | yes | no |
| Q07US6 | DNAK_RHOP5 | No assigned EC number | 0.6464 | 0.8663 | 0.8909 | yes | no |
| Q5ZM98 | GRP75_CHICK | No assigned EC number | 0.6363 | 0.8494 | 0.8192 | yes | no |
| P48721 | GRP75_RAT | No assigned EC number | 0.6303 | 0.8433 | 0.8085 | yes | no |
| Q11KJ6 | DNAK_MESSB | No assigned EC number | 0.6384 | 0.9078 | 0.9292 | yes | no |
| P11141 | HSP7F_CAEEL | No assigned EC number | 0.6375 | 0.8632 | 0.8554 | yes | no |
| A7IC65 | DNAK_XANP2 | No assigned EC number | 0.6360 | 0.9062 | 0.9350 | yes | no |
| Q6NCY4 | DNAK_RHOPA | No assigned EC number | 0.6531 | 0.8663 | 0.8938 | yes | no |
| Q0BW82 | DNAK_GRABC | No assigned EC number | 0.6153 | 0.9062 | 0.9335 | yes | no |
| O35501 | GRP75_CRIGR | No assigned EC number | 0.5943 | 0.9185 | 0.8807 | yes | no |
| O05700 | DNAK_RHOS7 | No assigned EC number | 0.6548 | 0.8663 | 0.8938 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_fgenesh4_pm.C_LG_IX0400 | hypothetical protein (683 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| estExt_Genewise1_v1.C_LG_II2716 | hypothetical protein; Essential component of the PAM complex, a complex required for the transl [...] (274 aa) | • | • | • | 0.561 | ||||||
| gw1.XI.2808.1 | hypothetical protein; Essential component of the PAM complex, a complex required for the transl [...] (244 aa) | • | • | • | • | 0.525 | |||||
| fgenesh4_pg.C_LG_V000902 | hypothetical protein (229 aa) | • | • | • | 0.518 | ||||||
| eugene3.00190466 | hypothetical protein (110 aa) | • | 0.500 | ||||||||
| estExt_fgenesh4_pg.C_LG_X1023 | hypothetical protein (175 aa) | • | 0.500 | ||||||||
| gw1.II.3317.1 | hypothetical protein (126 aa) | • | 0.499 | ||||||||
| gw1.41.327.1 | hypothetical protein (212 aa) | • | 0.499 | ||||||||
| fgenesh4_pg.C_LG_VI000215 | hypothetical protein (191 aa) | • | 0.499 | ||||||||
| estExt_fgenesh4_pm.C_1330037 | hypothetical protein (160 aa) | • | 0.499 | ||||||||
| grail3.0096001803 | hypothetical protein (221 aa) | • | 0.498 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 651 | |||
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 0.0 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 0.0 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 0.0 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 0.0 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 0.0 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 0.0 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 0.0 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 0.0 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 0.0 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 0.0 | |
| cd11733 | 377 | cd11733, HSPA9-like_NBD, Nucleotide-binding domain | 0.0 | |
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 0.0 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 0.0 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 0.0 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 0.0 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 1e-172 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 1e-148 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 1e-144 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 1e-130 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 1e-112 | |
| cd10235 | 339 | cd10235, HscC_like_NBD, Nucleotide-binding domain | 1e-105 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 1e-105 | |
| cd10228 | 381 | cd10228, HSPA4_like_NDB, Nucleotide-binding domain | 1e-99 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 3e-88 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 7e-70 | |
| cd10230 | 388 | cd10230, HYOU1-like_NBD, Nucleotide-binding domain | 5e-67 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 1e-62 | |
| cd11737 | 383 | cd11737, HSPA4_NBD, Nucleotide-binding domain of H | 4e-58 | |
| cd11732 | 377 | cd11732, HSP105-110_like_NBD, Nucleotide-binding d | 1e-55 | |
| cd11738 | 383 | cd11738, HSPA4L_NBD, Nucleotide-binding domain of | 6e-53 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 4e-51 | |
| cd10229 | 404 | cd10229, HSPA12_like_NBD, Nucleotide-binding domai | 3e-19 | |
| cd10231 | 415 | cd10231, YegD_like, Escherichia coli YegD, a putat | 4e-18 | |
| PLN00130 | 213 | PLN00130, PLN00130, succinate dehydrogenase (SDH3) | 9e-18 | |
| cd10231 | 415 | cd10231, YegD_like, Escherichia coli YegD, a putat | 4e-15 | |
| TIGR02529 | 239 | TIGR02529, EutJ, ethanolamine utilization protein | 2e-07 | |
| PRK11678 | 450 | PRK11678, PRK11678, putative chaperone; Provisiona | 3e-07 | |
| COG4820 | 277 | COG4820, EutJ, Ethanolamine utilization protein, p | 8e-07 | |
| PRK15080 | 267 | PRK15080, PRK15080, ethanolamine utilization prote | 1e-06 | |
| PRK11678 | 450 | PRK11678, PRK11678, putative chaperone; Provisiona | 4e-06 | |
| pfam06723 | 327 | pfam06723, MreB_Mbl, MreB/Mbl protein | 4e-05 | |
| PRK13929 | 335 | PRK13929, PRK13929, rod-share determining protein | 5e-05 | |
| cd10225 | 320 | cd10225, MreB_like, MreB and similar proteins | 7e-05 | |
| COG1077 | 342 | COG1077, MreB, Actin-like ATPase involved in cell | 9e-05 | |
| TIGR00904 | 333 | TIGR00904, mreB, cell shape determining protein, M | 9e-05 | |
| PRK13930 | 335 | PRK13930, PRK13930, rod shape-determining protein | 1e-04 | |
| cd00012 | 185 | cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- | 2e-04 | |
| TIGR01312 | 481 | TIGR01312, XylB, D-xylulose kinase | 0.002 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 1090 bits (2822), Expect = 0.0
Identities = 391/624 (62%), Positives = 483/624 (77%), Gaps = 33/624 (5%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
IIGIDLGTTNSCVA+MEG PKVIEN+EG+RTTPSVVAF + GE LVG PAKRQAVTNP
Sbjct: 4 IIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPE 63
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKM 178
NT+F KRL+GR+ D + QK++++V YKIV+A NGDAWVE +G++Y+P +I A +L K+
Sbjct: 64 NTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKL 121
Query: 179 KETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMN- 237
K+ AE YLG+ V++AVITVPAYFNDAQRQATKDAG+IAGL+V RIINEPTAA+L+YG++
Sbjct: 122 KKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 181
Query: 238 NKEGLIAVFDLGGGTFDVSILEISNGVFE-----------------------------DE 268
+ I V+DLGGGTFDVSILEI +GVFE +
Sbjct: 182 KGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKEN 241
Query: 269 GIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETL 328
GIDL KD++ALQRL+EAAEKAKIELSS QT+INLPFITADASG KHL I LTR+KFE L
Sbjct: 242 GIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEEL 301
Query: 329 VNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPD 388
+L+ERT PCK LKDA ++ D+DEV+LVGG TR+P VQE+V E FGK P+KGVNPD
Sbjct: 302 TEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPD 361
Query: 389 EAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFST 448
E VA+GAAIQGG+L GDVK++LLLDVTPLSLGIETLGG+ T+LI RNTTIPTKKSQVFST
Sbjct: 362 EVVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFST 421
Query: 449 AADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSA 508
AADNQ V I VLQGEREMA+DNKSLG F L GIPPAPRG+PQIEVTFDIDANGIV VSA
Sbjct: 422 AADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHVSA 481
Query: 509 KDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEK 568
KDK TGKEQ ITI +S GLS++EIE+MVK+AE +A+ D +RK L++ RNQAD+ IY EK
Sbjct: 482 KDKGTGKEQSITITASSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEK 541
Query: 569 SLGEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHM-AGGSG 627
+L E +K+P++ ++IE A+ +L++A+ ++ + IK+K + +A K+G+ M
Sbjct: 542 TLKELGDKVPADEKEKIEAAIKELKEALKGEDKEAIKAKTEELTQASQKLGEAMYQQAQA 601
Query: 628 GGAASGGSQGGEQTPEAEYEEVKK 651
A+G + + +AE+EEVK
Sbjct: 602 AQGAAGAAAKDDDVVDAEFEEVKD 625
|
Length = 627 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 915 bits (2367), Expect = 0.0
Identities = 378/599 (63%), Positives = 458/599 (76%), Gaps = 38/599 (6%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
+IGIDLGTTNSCVA+MEG P+VI N EG+RTTPSVVAF K E LVG AKRQAVTNP
Sbjct: 1 VIGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPK-ERLVGQAAKRQAVTNPK 59
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEAN--GQQYSPSQIGAFVLT 176
NT+F KRLIGRKF DP Q++++ V YK+V+ PNGDA VE G+ ++P QI A VL
Sbjct: 60 NTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGETFTPEQISAMVLQ 119
Query: 177 KMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGM 236
K+KETAE+YLG+ V+ AVITVPAYFNDAQRQATKDAGRIAGL+V RIINEPTAA+L+YG+
Sbjct: 120 KLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGL 179
Query: 237 N--NKEGLIAVFDLGGGTFDVSILEISNGVFE---------------------------- 266
+ +KE + VFDLGGGTFDVSILEI +GVFE
Sbjct: 180 DKKDKERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEEFK 239
Query: 267 -DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKF 325
GIDLSKD ALQRLREAAEKAKIELSS QT+INLPFITA A G K ++ TLTR+KF
Sbjct: 240 KKYGIDLSKDPRALQRLREAAEKAKIELSSN-QTEINLPFITAMADG-KDVSGTLTRAKF 297
Query: 326 ETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGV 385
E L +L ERT P + LKDA ++ ++DEV+LVGG TR+P VQE+V E FGK PSKGV
Sbjct: 298 EELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKGV 357
Query: 386 NPDEAVALGAAIQGGILRG--DVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKS 443
NPDEAVA+GAA+Q G+L G DVK++LLLDVTPLSLGIETLGG+ T+LI RNTTIPTKKS
Sbjct: 358 NPDEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKS 417
Query: 444 QVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGI 503
Q+FSTAADNQT V I+V QGEREMA DNK LG FEL GIPPAPRG+PQIEVTFDIDANGI
Sbjct: 418 QIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANGI 477
Query: 504 VTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTI 563
+TVSAKDK TGKEQ+ITI +S GLS+DEIE+MVK+AE +A D +RK I+ +N+A+ +
Sbjct: 478 LTVSAKDKGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYV 537
Query: 564 YSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHM 622
YS+EKSL E +K+P K++E+A+ L++ + ++ ++I++K + K V IG+ M
Sbjct: 538 YSLEKSLKEEGDKLPEADKKKVEEAIEWLKEELEGEDKEEIEAKTEELQKVVQPIGERM 596
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 909 bits (2352), Expect = 0.0
Identities = 374/595 (62%), Positives = 463/595 (77%), Gaps = 34/595 (5%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
IIGIDLGTTNSCVA+MEG P VI N+EG+RTTPSVVAF + GE LVG PAKRQAVTNP
Sbjct: 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPE 61
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKM 178
NT++ KR +GR+FD + +E + V YK V GD V+ +G++Y+P +I A +L K+
Sbjct: 62 NTIYSIKRFMGRRFD--EVTEEAKRVPYK-VVGDGGDVRVKVDGKEYTPQEISAMILQKL 118
Query: 179 KETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMN- 237
K+ AE+YLG+ V++AVITVPAYFNDAQRQATKDAG+IAGL+V RIINEPTAA+L+YG++
Sbjct: 119 KKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 178
Query: 238 -NKEGLIAVFDLGGGTFDVSILEISNGVFE-----------------------------D 267
K+ I VFDLGGGTFDVSILEI +GVFE +
Sbjct: 179 SKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKE 238
Query: 268 EGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFET 327
EGIDLSKD++ALQRL+EAAEKAKIELSS T+INLPFITADASG KHL +TLTR+KFE
Sbjct: 239 EGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEE 298
Query: 328 LVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNP 387
L +L+ERT+ P + LKDA ++ D+DEV+LVGG TR+P VQE+V + FGK P+K VNP
Sbjct: 299 LTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNP 358
Query: 388 DEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFS 447
DE VA+GAAIQGG+L+GDVK++LLLDVTPLSLGIETLGG+ T+LI RNTTIPTKKSQVFS
Sbjct: 359 DEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFS 418
Query: 448 TAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVS 507
TAADNQ V I VLQGER MA+DNKSLG FEL GIPPAPRG+PQIEVTFDIDANGI+ VS
Sbjct: 419 TAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHVS 478
Query: 508 AKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIE 567
AKDK TGKEQ ITI +S GLSE+EIE+MVKEAE +A+ D +RK I+ RN AD+ Y E
Sbjct: 479 AKDKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAE 538
Query: 568 KSLGEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHM 622
K+L E +K+P+E ++IE AVA+L++A+ ++V++IK+K + +A+ K+ + M
Sbjct: 539 KTLKEAGDKLPAEEKEKIEKAVAELKEALKGEDVEEIKAKTEELQQALQKLAEAM 593
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 905 bits (2341), Expect = 0.0
Identities = 394/621 (63%), Positives = 483/621 (77%), Gaps = 30/621 (4%)
Query: 55 AGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAV 114
A DI+GIDLGTTNSCVA+MEG PKVIENSEG RTTPSVVAF + G+ LVG AKRQAV
Sbjct: 39 ATGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAV 98
Query: 115 TNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFV 174
TNP NT+F TKRLIGR++D+ T+KE +++ YKIVRA NGDAW+EA G++YSPSQIGAFV
Sbjct: 99 TNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFV 158
Query: 175 LTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSY 234
L KMKETAESYLG+ V +AVITVPAYFND+QRQATKDAG+IAGLDV RIINEPTAA+L++
Sbjct: 159 LEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAF 218
Query: 235 GMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE--------------------------- 266
GM+ +G IAV+DLGGGTFD+SILEI GVFE
Sbjct: 219 GMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEF 278
Query: 267 --DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSK 324
+GIDL KD+LALQRLREAAE AKIELSS TQT+INLPFITAD SG KHL I L+R+K
Sbjct: 279 KKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAK 338
Query: 325 FETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKG 384
E L ++L+++T PC+ C+KDA + ++++V+LVGGMTR+PKV E V +IFGK PSKG
Sbjct: 339 LEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKG 398
Query: 385 VNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQ 444
VNPDEAVA+GAAIQ G+L+G++K+LLLLDVTPLSLGIETLGG+FTRLINRNTTIPTKKSQ
Sbjct: 399 VNPDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQ 458
Query: 445 VFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIV 504
VFSTAADNQTQVGIKV QGEREMA+DNK LG+F+LVGIPPAPRG+PQIEVTFD+DANGI+
Sbjct: 459 VFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIM 518
Query: 505 TVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIY 564
+SA DK+TGK+Q+ITI+SSGGLS++EIEKMVKEAE + ++D ++K L+D +N+A+T IY
Sbjct: 519 NISAVDKSTGKKQEITIQSSGGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIY 578
Query: 565 SIEKSLGEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAG 624
S+EK L + ++KI E++ + LR + +++VD IK K +A KI Q
Sbjct: 579 SVEKQLSDLKDKISDADKDELKQKITKLRSTLSSEDVDSIKDKTKQLQEASWKISQQAYK 638
Query: 625 GSGGGAASGGSQGGEQTPEAE 645
+ E +
Sbjct: 639 QGNSDNQQSEQSTNSEESEEK 659
|
Length = 663 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 774 bits (2000), Expect = 0.0
Identities = 343/609 (56%), Positives = 434/609 (71%), Gaps = 36/609 (5%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
+IGIDLGTTNSCVA++EG P VI NSEG RTTPS+V F + G+ LVG AKRQAVTN
Sbjct: 4 VIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAE 63
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKM 178
NT++ KR IGR++DD T++E V Y V+ + V+ G+ Y+P +I A +L K+
Sbjct: 64 NTVYSIKRFIGRRWDD--TEEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKL 121
Query: 179 KETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMN- 237
K+ AE+YLG+ V++AVITVPAYF DAQRQATKDAG IAGL+V RIINEPTAA+L+YG++
Sbjct: 122 KQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDK 181
Query: 238 -NKEGLIAVFDLGGGTFDVSILEISNGVFE-----------------------------D 267
++E LI VFDLGGGTFDVSIL++ +GVFE
Sbjct: 182 QDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQ 241
Query: 268 EGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFET 327
EGIDLS+D++ALQRLREAAEKAKIELSS T INLPFITAD +G KHL + LTR+KFE
Sbjct: 242 EGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEE 301
Query: 328 LVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIF-GKSPSKGVN 386
L +L+E T P + LKDA + +D+D V+LVGG TR+P VQE + + F GK P + VN
Sbjct: 302 LTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVN 361
Query: 387 PDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVF 446
PDEAVALGAAIQ G+L G+VK+LLLLDVTPLSLGIETLG +FT++I RNTTIPT KSQVF
Sbjct: 362 PDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQVF 421
Query: 447 STAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTV 506
STA D QT V I VLQGER MA DNKSLG+F L GIPPAPRG+PQIEV+F+ID NGI+ V
Sbjct: 422 STATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILKV 481
Query: 507 SAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSI 566
SA+D+ TG+EQ I I ++GGLS +EIE+M +EAE +A+ D RK LI+++NQAD+ +YS
Sbjct: 482 SAQDQGTGREQSIRITNTGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSY 541
Query: 567 EKSLGEYREKIPSEVAKEIEDAVADLRKAMGADNV--DDIKSKLDAANKAVSKIGQHMAG 624
E +L E E I E+ + E V L A+ N+ +++K +L+ +A+ IG +
Sbjct: 542 ESTLKENGELISEELKQRAEQKVEQLEAALTDPNISLEELKQQLEEFQQALLAIGAEVYQ 601
Query: 625 GSGGGAASG 633
G
Sbjct: 602 QGGSQTTDT 610
|
Length = 653 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 770 bits (1990), Expect = 0.0
Identities = 352/596 (59%), Positives = 442/596 (74%), Gaps = 34/596 (5%)
Query: 57 NDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTN 116
++GIDLGTTNS VA+MEG P VI N+EG RTTPS+VA+ +KG+LLVG AKRQAV N
Sbjct: 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVIN 61
Query: 117 PTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVE--ANGQQYSPSQIGAFV 174
P NT + KR IGRKF + +E + VSYK+ NG+ +E A + +SP +I A V
Sbjct: 62 PENTFYSVKRFIGRKFS--EISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQV 119
Query: 175 LTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSY 234
L K+ E A YLG++V++AVITVPAYFND+QRQATKDAG+IAGL+V RIINEPTAASL+Y
Sbjct: 120 LRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAY 179
Query: 235 GMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE--------------------------- 266
G++ K I VFDLGGGTFDVSILE+ +GVFE
Sbjct: 180 GLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEF 239
Query: 267 --DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSK 324
EGIDLSKDR ALQRL EAAEKAKIELS+ TQT+INLPFITA +G KH+ TLTR+K
Sbjct: 240 KKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAK 299
Query: 325 FETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKG 384
FE L ++LI R R P +N LKDA + D+DEV+LVGG TR+P +QE+V ++ GK P++
Sbjct: 300 FEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQS 359
Query: 385 VNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQ 444
VNPDE VA+GAA+Q G+L G+VK++LLLDVTPLSLG+ETLGG+ T++I RNTTIPTKKS+
Sbjct: 360 VNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSE 419
Query: 445 VFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIV 504
VFSTA DNQT V I VLQGERE+A DNKSLG F L GIPPAPRG+PQIEVTFDIDANGI+
Sbjct: 420 VFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGIL 479
Query: 505 TVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIY 564
+V+AKDK TGKEQ ITI+ + L +DE+E+MVKEAE +A D E++ ID++NQA++ Y
Sbjct: 480 SVTAKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCY 539
Query: 565 SIEKSLGEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQ 620
EK L E ++KI E ++IE+ + LR+A+ DN + IKS L+ KA+ +IG+
Sbjct: 540 QAEKQLKELKDKISEEKKEKIENLIKKLRQALQNDNYESIKSLLEELQKALMEIGK 595
|
Length = 621 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 732 bits (1891), Expect = 0.0
Identities = 388/649 (59%), Positives = 486/649 (74%), Gaps = 43/649 (6%)
Query: 42 SWASLTRPFSSKPAGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKG 101
S A L R S K G D+IG+DLGTT SCVA M+G +V+ENSEG RTTPSVVAF +
Sbjct: 13 SAARLARHESQKVQG-DVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAF-KGS 70
Query: 102 ELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVE-A 160
E LVG AKRQA+TNP +T + KRLIGR+F+D QK+++ V YKIVRA NGDAWV+
Sbjct: 71 EKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQDG 130
Query: 161 NGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDV 220
NG+QYSPSQIGAFVL KMKETAE++LG VS AV+T PAYFNDAQRQATKDAG IAGL+V
Sbjct: 131 NGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNV 190
Query: 221 QRIINEPTAASLSYGMN-NKEGLIAVFDLGGGTFDVSILEISNGVFE------------- 266
R++NEPTAA+L+YGM+ K+ LIAV+DLGGGTFD+S+LEI+ GVFE
Sbjct: 191 IRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGE 250
Query: 267 ----------------DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADA 310
GIDLSK+R+ALQR+REAAEKAK ELSS +T++NLPFITA+A
Sbjct: 251 DFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANA 310
Query: 311 SGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQ 370
GA+H+ + ++RSKFE + LIER+ APCK C+KDA + K++++V+LVGGMTR+PKV
Sbjct: 311 DGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVV 370
Query: 371 EVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTR 430
E V + F K P +GVNPDEAVALGAA GG+LRGDVK L+LLDVTPLSLGIETLGG+FTR
Sbjct: 371 EEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIETLGGVFTR 430
Query: 431 LINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMP 490
+I +NTTIPTKKSQ FSTAADNQTQVGIKV QGEREMA+DN+ +G+F+LVGIPPAPRG+P
Sbjct: 431 MIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVP 490
Query: 491 QIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERK 550
QIEVTFDIDANGI V+AKDKATGK Q ITI ++GGLS+++IE+M++++E HA+ D ++
Sbjct: 491 QIEVTFDIDANGICHVTAKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKR 550
Query: 551 ALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKE-IEDAVADLRKAMGADNV--DDIKSK 607
L+++RN A+T + + E+ LGE+ K S+ KE ++ VA+LRKAM NV DD+ +
Sbjct: 551 ELVEVRNNAETQLTTAERQLGEW--KYVSDAEKENVKTLVAELRKAMENPNVAKDDLAAA 608
Query: 608 LDAANKAVSKIG-----QHMAGGSGGGAASGGSQGGEQTPEAEYEEVKK 651
D KAV + G Q A SG + SG Q +Q + + E KK
Sbjct: 609 TDKLQKAVMECGRTEYQQAAAANSGSSSNSGEQQQQQQQQQQQNSEEKK 657
|
Length = 657 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 724 bits (1870), Expect = 0.0
Identities = 340/616 (55%), Positives = 438/616 (71%), Gaps = 35/616 (5%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
++GIDLGTTNS VA MEG P ++ N+EG RTTPSVVA+ + G+ LVG AKRQAV NP
Sbjct: 41 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPE 100
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVE--ANGQQYSPSQIGAFVLT 176
NT F KR IGRK + +E + VSY++VR NG+ ++ A G+Q++ +I A VL
Sbjct: 101 NTFFSVKRFIGRKMS--EVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLR 158
Query: 177 KMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGM 236
K+ + A +L V+KAVITVPAYFND+QR ATKDAGRIAGL+V RIINEPTAASL+YG
Sbjct: 159 KLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGF 218
Query: 237 NNKEG-LIAVFDLGGGTFDVSILEISNGVFE----------------------------- 266
K I VFDLGGGTFDVS+LE+ +GVFE
Sbjct: 219 EKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKK 278
Query: 267 DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFE 326
DEGIDL KD+ ALQRL EAAEKAKIELSS TQT I+LPFITA A G KH++ TLTR+KFE
Sbjct: 279 DEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFE 338
Query: 327 TLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVN 386
L ++L++R + P +N L+DA ++ KD+DEV+LVGG TR+P VQE+V ++ GK P+ VN
Sbjct: 339 ELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVN 398
Query: 387 PDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVF 446
PDE VALGAA+Q G+L G+V +++LLDVTPLSLG+ETLGG+ T++I RNTT+PT KS+VF
Sbjct: 399 PDEVVALGAAVQAGVLAGEVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVF 458
Query: 447 STAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTV 506
STAAD QT V I VLQGERE DNKSLG F L GIPPAPRG+PQIEV FDIDANGI++V
Sbjct: 459 STAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 518
Query: 507 SAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSI 566
SA DK TGK+Q ITI + L +DE+E+MV+EAE A+ D E++ +D +NQAD+ +Y
Sbjct: 519 SATDKGTGKKQDITITGASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQT 578
Query: 567 EKSLGEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAGGS 626
EK L E +K+P++V +++E + +L+ A+ + + +K + A N+ V +IGQ +
Sbjct: 579 EKQLKELGDKVPADVKEKVEAKLKELKDAIASGSTQKMKDAMAALNQEVMQIGQSLYNQP 638
Query: 627 GGGAASGGSQGGEQTP 642
G G A G + GGE
Sbjct: 639 GAGGA-GPAPGGEAGS 653
|
Length = 673 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 700 bits (1810), Expect = 0.0
Identities = 303/593 (51%), Positives = 405/593 (68%), Gaps = 57/593 (9%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
I+GIDLGTTNS VA+MEG P VI N+EG RTTPSVV F + GELLVG A+RQ V NP
Sbjct: 4 IVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQ 63
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVE--ANGQQYSPSQIGAFVLT 176
NT + KR IGR++D+ E + V Y I R G+ ++ ++++P ++ A +L
Sbjct: 64 NTFYNLKRFIGRRYDE--LDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILR 121
Query: 177 KMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGM 236
K+ + A YLG+ V+ AVITVPAYFND+QRQAT+DAGRIAGL+V+RI+NEPTAA+L+YG+
Sbjct: 122 KLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGL 181
Query: 237 NNKEG-LIAVFDLGGGTFDVSILEISNGVF-----------------------------E 266
+ + VFDLGGGTFDVS+LE+ NGVF E
Sbjct: 182 DRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLE 241
Query: 267 DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFE 326
EGIDL +DR ALQRL EAAEKAKIELS + TDI+LPFITA G KH+ L R +FE
Sbjct: 242 KEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFE 301
Query: 327 TLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVN 386
+L +L++R P K LKDA ++ +D+DEV+LVGG TR+P VQ++V + + P++ VN
Sbjct: 302 SLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVN 361
Query: 387 PDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVF 446
PDE VA+GAAIQ GIL G++K+LLLLDVTPLSLG+ET+GG+ +LI RNTTIP ++S VF
Sbjct: 362 PDEVVAVGAAIQAGILAGELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVF 421
Query: 447 STAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTV 506
ST+ +NQ+ V I V QGEREMASDNKSLG F+L GIPPAPRG+PQ++V FDIDANGI+ V
Sbjct: 422 STSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQV 481
Query: 507 SAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIY-- 564
SA D+ TG+EQ +TI+ + LSE E+ +M++EAE A D R+ I+ RN+A T I
Sbjct: 482 SATDRTTGREQSVTIQGASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQA 541
Query: 565 ---------------------SIEKSLGEYREKIPSEVAKEIEDAVADLRKAM 596
++E ++ + ++ + + +E++ AVADL++A+
Sbjct: 542 ERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEAL 594
|
Length = 668 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 697 bits (1800), Expect = 0.0
Identities = 336/593 (56%), Positives = 418/593 (70%), Gaps = 56/593 (9%)
Query: 59 IIGIDLGTTNSCVALMEGKN-PKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNP 117
IGIDLGTTNS VA+M G PKVIEN+EG R TPSVVAF++ GE+LVG AKRQAV NP
Sbjct: 7 AIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNP 66
Query: 118 TNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTK 177
NT+F KR IGR + + VE +G++Y+P +I A +LTK
Sbjct: 67 ENTIFSIKRKIGRGSNGLK-------------------ISVEVDGKKYTPEEISAMILTK 107
Query: 178 MKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMN 237
+KE AE+YLG+ V+ AVITVPAYFNDAQRQATKDA RIAGL+V R+INEPTAA+L+YG++
Sbjct: 108 LKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLD 167
Query: 238 -NKEGLIAVFDLGGGTFDVSILEISNGVFED----------------------------- 267
KE + V+DLGGGTFDVS+LEI +GVFE
Sbjct: 168 KGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGK 227
Query: 268 EGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFET 327
GIDL D+ ALQRLREAAEKAKIELSS TQT INLP I D L LTR+KFE
Sbjct: 228 GGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD----IDLLKELTRAKFEE 283
Query: 328 LVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNP 387
L+ +L+ERT P + LKDA + D+D V+LVGG TR+P VQE+V E FGK P K +NP
Sbjct: 284 LILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINP 343
Query: 388 DEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFS 447
DEAVALGAAIQ +L G+V ++LLLDV PLSLGIETLGG+ T +I RNTTIP KKSQ FS
Sbjct: 344 DEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFS 403
Query: 448 TAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVS 507
TAAD QT V I V QGEREMA+DNKSLG FEL GIPPAPRG+PQIEVTFDIDANGI+ V+
Sbjct: 404 TAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVT 463
Query: 508 AKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIE 567
AKD TGKEQ ITI++S GLS++EIE+MV++AE +A D + + L++ RN+A++ IYS+E
Sbjct: 464 AKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLE 523
Query: 568 KSLGEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQ 620
K+L E K+ E ++IE+A+ DL +A+ ++IK+K++ + K+ +
Sbjct: 524 KALKEI-VKVSEEEKEKIEEAITDLEEAL-EGEKEEIKAKIEELQEVTQKLAE 574
|
Length = 579 |
| >gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins | Back alignment and domain information |
|---|
Score = 668 bits (1725), Expect = 0.0
Identities = 262/377 (69%), Positives = 308/377 (81%), Gaps = 30/377 (7%)
Query: 56 GNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVT 115
+IGIDLGTTNSCVA+MEGK PKVIEN+EG+RTTPSVVAF + GE LVG PAKRQAVT
Sbjct: 1 KGAVIGIDLGTTNSCVAVMEGKTPKVIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVT 60
Query: 116 NPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVL 175
NP NTL+ TKRLIGR+FDDP+ QK+++ V YKIV+A NGDAWVEA+G++YSPSQIGAFVL
Sbjct: 61 NPENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVKASNGDAWVEAHGKKYSPSQIGAFVL 120
Query: 176 TKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYG 235
KMKETAE+YLGK V AVITVPAYFND+QRQATKDAG+IAGL+V R+INEPTAA+L+YG
Sbjct: 121 MKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYG 180
Query: 236 MNNKEG-LIAVFDLGGGTFDVSILEISNGVFE---------------------------- 266
++ K+ +IAV+DLGGGTFD+SILEI GVFE
Sbjct: 181 LDKKDDKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDNALLRHLVKEFK 240
Query: 267 -DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKF 325
++GIDL+KD +ALQRLREAAEKAKIELSS+ QTDINLP+ITADASG KHLN+ LTR+KF
Sbjct: 241 KEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLNMKLTRAKF 300
Query: 326 ETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGV 385
E+LV +LI+RT PCK LKDA ++ D+ EV+LVGGMTR+PKVQE V EIFGK PSKGV
Sbjct: 301 ESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIFGKEPSKGV 360
Query: 386 NPDEAVALGAAIQGGIL 402
NPDEAVA+GAAIQGG+L
Sbjct: 361 NPDEAVAIGAAIQGGVL 377
|
This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 592 bits (1527), Expect = 0.0
Identities = 295/634 (46%), Positives = 394/634 (62%), Gaps = 63/634 (9%)
Query: 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTN 119
IGIDLGTT SCV + + +N ++I N +G+RTTPS VAF E L+G AK Q NP N
Sbjct: 7 IGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVARNPEN 65
Query: 120 TLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQ----QYSPSQIGAFVL 175
T+F KRLIGRKFDD Q +M+ +K+ + +E Q + P +I + VL
Sbjct: 66 TVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVL 125
Query: 176 TKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYG 235
KMKE AE+YLGK V AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAA+++YG
Sbjct: 126 QKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 185
Query: 236 MNNK---EGLIAVFDLGGGTFDVSILEISNGVFE-------------------------- 266
++ K E + +FDLGGGTFDVS+L I +G+FE
Sbjct: 186 LDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQD 245
Query: 267 ----DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLP--FITADASGAKHLNITL 320
+ G DLS ++ AL+RLR E+AK LSS+TQ I + F D N+T+
Sbjct: 246 FKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGID------YNVTI 299
Query: 321 TRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIF-GK 379
+R++FE L + T P + LKDA + + V EV+LVGG TR+PKVQ ++ + F GK
Sbjct: 300 SRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGK 359
Query: 380 SPSKGVNPDEAVALGAAIQGGILRGD----VKELLLLDVTPLSLGIETLGGIFTRLINRN 435
P K +NPDEAVA GAA+Q IL G+ V++LLLLDVTPLSLG+ET GG+ T+LI RN
Sbjct: 360 EPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERN 419
Query: 436 TTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVT 495
TTIPTKKSQ+F+T ADNQ V I+V +GER M DN LG+F L GIPPAPRG+PQIEVT
Sbjct: 420 TTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVT 479
Query: 496 FDIDANGIVTVSAKDKATGKEQQITIRSSGG-LSEDEIEKMVKEAELHAQRDNERKALID 554
FDIDANGI+ VSA+DK+TGK +ITI + G LS+ +I++MV EAE + D + ++
Sbjct: 480 FDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVE 539
Query: 555 IRNQADTTIYSIEKSLGE--YREKIPSE----VAKEIEDAVADLRKAMGADNVDDIKSKL 608
+N + YS++ +L + + K+ + K I++A+ L K A+ ++ + K
Sbjct: 540 AKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEK-EEFEHKQ 598
Query: 609 DAA----NKAVSKIGQHMAGGSGGGAASGGSQGG 638
N ++K+ Q GG GG G G
Sbjct: 599 KEVESVCNPIMTKMYQAAGGGMPGGMPGGMPGGM 632
|
Length = 653 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 578 bits (1492), Expect = 0.0
Identities = 234/376 (62%), Positives = 287/376 (76%), Gaps = 35/376 (9%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
IIGIDLGTTNSCVA+MEG P VI N+EGSRTTPSVVAF +KGE LVG PAKRQAVTNP
Sbjct: 4 IIGIDLGTTNSCVAVMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTNPE 63
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVE--ANGQQYSPSQIGAFVLT 176
NT+F KR +GRKFD+ + ++++ YK+V G+ VE +NG+ Y+P +I A +L
Sbjct: 64 NTIFSIKRFMGRKFDEVEEERKV---PYKVVVDEGGNYKVEIDSNGKDYTPQEISAMILQ 120
Query: 177 KMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGM 236
K+KE AE+YLG+ V++AVITVPAYFND+QRQATKDAG+IAGL+V RIINEPTAA+L+YG+
Sbjct: 121 KLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 180
Query: 237 NNK-EGLIAVFDLGGGTFDVSILEISNGVFE----------------------------- 266
+ K I V+DLGGGTFDVSILEI +GVFE
Sbjct: 181 DKKGNEKILVYDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGDDFDQRIIDWLVEEFKK 240
Query: 267 DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFE 326
+EGIDL KD++ALQRL+EAAEKAKIELSS T+T+INLPFITADA+G KHL +TLTR+KFE
Sbjct: 241 EEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLEMTLTRAKFE 300
Query: 327 TLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVN 386
L +L+ERT P K LKDA ++ D+DEV+LVGG TR+P VQE+V E+FGK P+KGVN
Sbjct: 301 ELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELFGKEPNKGVN 360
Query: 387 PDEAVALGAAIQGGIL 402
PDE VA+GAAIQGG+L
Sbjct: 361 PDEVVAIGAAIQGGVL 376
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 552 bits (1425), Expect = 0.0
Identities = 233/583 (39%), Positives = 353/583 (60%), Gaps = 41/583 (7%)
Query: 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTN 119
+GIDLGTTNS VA + +V+ + +G PSVV + + G + VG A+ A +P N
Sbjct: 22 VGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDG-IEVGYEARANAAQDPKN 80
Query: 120 TLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMK 179
T+ KR +GR D Q + Y+ V + NG + SP ++ A +L ++
Sbjct: 81 TISSVKRFMGRSLADIQQ--RYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALR 138
Query: 180 ETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGM-NN 238
+ AE LG + AVITVPAYF+DAQRQATKDA R+AGL+V R++NEPTAA+++YG+ +
Sbjct: 139 QRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG 198
Query: 239 KEGLIAVFDLGGGTFDVSILEISNGVFE-------------------------DEGIDLS 273
+EG+IAV+DLGGGTFD+SIL +S GVFE G+
Sbjct: 199 QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAGLSPR 258
Query: 274 KDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLI 333
D + L +AA AK LS ++++ A G +TR +F L+ L+
Sbjct: 259 LDPEDQRLLLDAARAAKEALSDADSVEVSV----ALWQG------EITREQFNALIAPLV 308
Query: 334 ERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVAL 393
+RT C+ L+DA + +V EV++VGG TRVP V+E V E FG++P ++PD+ VA+
Sbjct: 309 KRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAI 368
Query: 394 GAAIQGGILRGDV--KELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD 451
GAAIQ IL G+ ++LLLDV PLSLG+ET+GG+ ++I RNTTIP ++Q F+T D
Sbjct: 369 GAAIQADILAGNKPDSDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKD 428
Query: 452 NQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDK 511
QT + I V+QGERE+ +D +SL FEL GIPP G +I VTF +DA+G+++V+A +K
Sbjct: 429 GQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVTAMEK 488
Query: 512 ATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLG 571
+TG E I ++ S GL++DEI +M+K++ HA+ D + +AL + + +A+ + +++ +L
Sbjct: 489 STGVEASIQVKPSYGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALA 548
Query: 572 EYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKA 614
+ + + I+ A+A LR+ D+ D I++ + A +KA
Sbjct: 549 ADGDLLSAAERAAIDAAMAALREVAQGDDADAIEAAIKALDKA 591
|
Length = 616 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 542 bits (1399), Expect = 0.0
Identities = 237/584 (40%), Positives = 358/584 (61%), Gaps = 37/584 (6%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
+GIDLGTTNS VA + P+V+ ++EG PSVV + + G + VG A A +P
Sbjct: 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPK 60
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKM 178
NT+ KRL+GR +D +T + Y+ V P + +P ++ A +L K+
Sbjct: 61 NTISSVKRLMGRSIEDIKTFSIL---PYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKL 117
Query: 179 KETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGM-N 237
K+ AE LG + AVITVPAYF+DAQRQATKDA R+AGL+V R++NEPTAA+++YG+
Sbjct: 118 KQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDK 177
Query: 238 NKEGLIAVFDLGGGTFDVSILEISNGVFE-------------------------DEGIDL 272
EG+ AV+DLGGGTFDVSIL+++ GVFE GI
Sbjct: 178 ASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLGISA 237
Query: 273 SKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNL 332
+ + L +AA AK L+ +++ D G LTR +FE L+ L
Sbjct: 238 DLNPEDQRLLLQAARAAKEALTDAESVEVDFTLDGKDFKG------KLTRDEFEALIQPL 291
Query: 333 IERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVA 392
+++T + C+ L+DA ++ +++ V+LVGG TR+P V+ V+E+FG+ P ++PD+ VA
Sbjct: 292 VQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVA 351
Query: 393 LGAAIQGGILRGDV--KELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAA 450
LGAAIQ +L G+ +LLLLDVTPLSLGIET+GG+ ++I RNT IP ++Q F+T
Sbjct: 352 LGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTYK 411
Query: 451 DNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKD 510
D QT + I V+QGERE+ D +SL FEL GIPP G +I VTF +DA+G++TVSA++
Sbjct: 412 DGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQE 471
Query: 511 KATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSL 570
++TG EQ I ++ S GLS++EIE+M+K++ HA+ D +AL + + +A+ + +++ +L
Sbjct: 472 QSTGVEQSIQVKPSYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAAL 531
Query: 571 GEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKA 614
+ + + I+ A+ L+KA+ D+ D IK+ ++A +A
Sbjct: 532 AADGDLLSEDERAAIDAAMEALQKALQGDDADAIKAAIEALEEA 575
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 493 bits (1272), Expect = e-172
Identities = 218/378 (57%), Positives = 275/378 (72%), Gaps = 36/378 (9%)
Query: 56 GNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVT 115
+ IIGIDLGTTNSCVA+++ P +IEN+EG RTTPS+V+F K +LVG AKRQ
Sbjct: 1 RSTIIGIDLGTTNSCVAVIDKTTPVIIENAEGKRTTPSIVSF-TKTGILVGEAAKRQEAL 59
Query: 116 NPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVL 175
+P NT F TKRLIGR+F D + Q++M++ YKIV NGDAW+ NG++YSPSQI +FVL
Sbjct: 60 HPENTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYTNGKKYSPSQIASFVL 119
Query: 176 TKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYG 235
K+K+TAE+YLGK V +AVITVPAYFND+QRQATKDAG +AGL V RIINEPTAA+L+YG
Sbjct: 120 KKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYG 179
Query: 236 MNNKE--GLIAVFDLGGGTFDVSILEISNGVFE--------------------------- 266
++ ++ IAV+DLGGGTFD+SIL I +GVFE
Sbjct: 180 IDKRKENKNIAVYDLGGGTFDISILNIEDGVFEVKATNGDTMLGGEDFDNAIVQYIIKEF 239
Query: 267 --DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSK 324
IDL++++ A+QR++EAAEKAKIELSS+ ++ I LP++ G KHL IT+TR +
Sbjct: 240 KRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYL----DGPKHLRITITRRE 295
Query: 325 FETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKG 384
FE L ++ +RT PCK CLKDA + KD+DEV+LVGGMTR+P +Q VV EIFGK PSK
Sbjct: 296 FEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIFGKKPSKS 355
Query: 385 VNPDEAVALGAAIQGGIL 402
VNPDEAVALGAAIQG IL
Sbjct: 356 VNPDEAVALGAAIQGSIL 373
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 434 bits (1118), Expect = e-148
Identities = 191/374 (51%), Positives = 243/374 (64%), Gaps = 38/374 (10%)
Query: 60 IGIDLGTTNSCVALMEGKN-PKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
IGIDLGTTNS VA ++ P++I N EGSRTTPSVV F+ GE+LVG AKRQA+ NP
Sbjct: 1 IGIDLGTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPE 60
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKM 178
NT+ KRLIGRKFDDP Q + V AP VE G++YSP ++ A +L K+
Sbjct: 61 NTVGDFKRLIGRKFDDPLVQSAKK-VIGVDRGAPIIPVPVELGGKKYSPEEVSALILKKL 119
Query: 179 KETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNN 238
KE AE+YLG+ V++AVITVPAYFNDAQR+ATK+A IAGL+V R+INEPTAA+L+YG++
Sbjct: 120 KEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLDK 179
Query: 239 ---KEGLIAVFDLGGGTFDVSILEISNGVFE---------------DE------------ 268
K I VFDLGGGTFDVS++E+ GVFE D
Sbjct: 180 KDEKGRTILVFDLGGGTFDVSLVEVEGGVFEVLATGGDNHLGGDDFDNALADYLAEKFKE 239
Query: 269 --GIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFE 326
GIDL D AL+RL+EAAEKAKI LSS+ + I LP + L + LTR +FE
Sbjct: 240 KGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGL----GSGGDLEVELTREEFE 295
Query: 327 TLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVN 386
L+ L+ERT + L DA + +D+D VLLVGG +R+P V+E++ E+FGK P + ++
Sbjct: 296 ELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKKPLRSID 355
Query: 387 PDEAVALGAAIQGG 400
PDEAVALGAAI
Sbjct: 356 PDEAVALGAAIYAA 369
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 424 bits (1093), Expect = e-144
Identities = 196/378 (51%), Positives = 252/378 (66%), Gaps = 42/378 (11%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
+IGIDLGTT SCV + + ++I N +G+R TPS VAF GE L+G AK QA +NP
Sbjct: 3 VIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTD-GERLIGDAAKNQATSNPE 61
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEAN----GQQYSPSQIGAFV 174
NT+F KRLIGRKFDD + QK+++++ YK+V +G ++E + + +SP +I A V
Sbjct: 62 NTIFDVKRLIGRKFDDKEVQKDIKLLPYKVVNK-DGKPYIEVDVKGEKKTFSPEEISAMV 120
Query: 175 LTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSY 234
LTKMKE AE+YLGK V AV+TVPAYFNDAQRQATKDAG IAGL+V RIINEPTAA+++Y
Sbjct: 121 LTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAY 180
Query: 235 GMNNKEG--LIAVFDLGGGTFDVSILEISNGVFE-------------------------- 266
G++ K G I VFDLGGGTFDVS+L I NGVFE
Sbjct: 181 GLDKKGGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEHFIKL 240
Query: 267 ---DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRS 323
G D+SKD+ ALQ+LR EKAK LSS QT I I + G + + TLTR+
Sbjct: 241 FKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIE---IESLFDG-EDFSETLTRA 296
Query: 324 KFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIF-GKSPS 382
KFE L +L ++T P K L+DA++ D+DE++LVGG TR+PKVQ+++ E F GK PS
Sbjct: 297 KFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKEPS 356
Query: 383 KGVNPDEAVALGAAIQGG 400
+G+NPDEAVA GAA+Q G
Sbjct: 357 RGINPDEAVAYGAAVQAG 374
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 387 bits (995), Expect = e-130
Identities = 177/382 (46%), Positives = 236/382 (61%), Gaps = 47/382 (12%)
Query: 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTN 119
IGIDLGTT SCV + + ++I N +G+RTTPS VAF E L+G AK Q NPTN
Sbjct: 2 IGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTN 60
Query: 120 TLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEAN----GQQYSPSQIGAFVL 175
T+F KRLIGRKF DP Q +M+ +K+V G + + + P +I + VL
Sbjct: 61 TVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGG-GKPPIIVEYKGETKTFYPEEISSMVL 119
Query: 176 TKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYG 235
TKMKE AE+YLGK+V+ AVITVPAYFND+QRQATKDAG IAGL+V RIINEPTAA+++YG
Sbjct: 120 TKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 179
Query: 236 MNNK---EGLIAVFDLGGGTFDVSILEISNGVFE------------------------DE 268
++ K E + +FDLGGGTFDVS+L I +G+FE E
Sbjct: 180 LDKKGGGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQE 239
Query: 269 -----GIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLP--FITADASGAKHLNITLT 321
D+S ++ AL+RLR A E+AK LSS+TQ I + F D ++T
Sbjct: 240 FKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGID------FYTSIT 293
Query: 322 RSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIF-GKS 380
R++FE L +L T P + L+DA + + +++LVGG TR+PKVQ+++ + F GK
Sbjct: 294 RARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 353
Query: 381 PSKGVNPDEAVALGAAIQGGIL 402
+K +NPDEAVA GAA+Q IL
Sbjct: 354 LNKSINPDEAVAYGAAVQAAIL 375
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 341 bits (878), Expect = e-112
Identities = 149/368 (40%), Positives = 207/368 (56%), Gaps = 42/368 (11%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
IGIDLGTTNS VA + K++ + G PSVV + G + VG A + A+++P
Sbjct: 2 AIGIDLGTTNSLVASVLSGKVKILPDENGRVLLPSVVHYGDGG-ISVGHDALKLAISDPK 60
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQY-SPSQIGAFVLTK 177
NT+ KRL+G+ +D + I+ NG + Q +P ++ A +L
Sbjct: 61 NTISSVKRLMGKSIEDIKKSF----PYLPILEGKNGGIILFHTQQGTVTPVEVSAEILKA 116
Query: 178 MKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGM- 236
+KE AE LG + AVITVPAYF+DAQRQATKDA R+AGL+V R++NEPTAA+L+YG+
Sbjct: 117 LKERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLD 176
Query: 237 NNKEGLIAVFDLGGGTFDVSILEISNGVFE---------------DE----------GID 271
KEG+ AV+DLGGGTFDVSIL++ GVFE D+ G+
Sbjct: 177 KKKEGIYAVYDLGGGTFDVSILKLHKGVFEVLATGGDSALGGDDFDQLLAELLLKKYGLK 236
Query: 272 LSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNN 331
L A KAK LS + ++ T+TR +FE L++
Sbjct: 237 SLISDEDQAELLLIARKAKEALSGAEEVEVRGQDFK----------CTITREEFEKLIDP 286
Query: 332 LIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAV 391
L+++T CK L+DA ++ KD+ V+LVGG TR+P VQE VS+ FG+ P +NPDE V
Sbjct: 287 LVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLCDINPDEVV 346
Query: 392 ALGAAIQG 399
A+GAA+Q
Sbjct: 347 AIGAALQA 354
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins | Back alignment and domain information |
|---|
Score = 322 bits (829), Expect = e-105
Identities = 154/369 (41%), Positives = 219/369 (59%), Gaps = 58/369 (15%)
Query: 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTN 119
IGIDLGTTNS VA+ + ++I N+ G TPSVV+ ++ GE+LVG A+ + +T+P
Sbjct: 1 IGIDLGTTNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDL 60
Query: 120 TLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMK 179
T KR +G T K+ Y++ +++ ++ + VL +K
Sbjct: 61 TAASFKRFMG-------TDKK-----YRL------------GKREFRAEELSSLVLRSLK 96
Query: 180 ETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNK 239
E AE+YLG+ V++AVI+VPAYFND QR+ATK AG +AGL V+R+INEPTAA+L+YG+++K
Sbjct: 97 EDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALAYGLHDK 156
Query: 240 --EGLIAVFDLGGGTFDVSILEISNGVFE-------------------------DEGIDL 272
E VFDLGGGTFDVS+LE+ +GV E G+D
Sbjct: 157 DEETKFLVFDLGGGTFDVSVLELFDGVMEVRASAGDNYLGGEDFTRALAEAFLKKHGLDF 216
Query: 273 SK-DRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNN 331
K D L RL AAE+AK LS + ++++ + L TLTR +FE +
Sbjct: 217 EKLDPSELARLLRAAERAKRALSDQEEAEMSVRI------EGEELEYTLTREEFEEICQP 270
Query: 332 LIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAV 391
L+ER R P + L+DA + D+DE++LVGG TR+P V+++VS +FG+ P +NPDE V
Sbjct: 271 LLERLRQPIERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRLFGRFPLVHLNPDEVV 330
Query: 392 ALGAAIQGG 400
ALGAAIQ G
Sbjct: 331 ALGAAIQAG 339
|
This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 330 bits (848), Expect = e-105
Identities = 193/574 (33%), Positives = 301/574 (52%), Gaps = 50/574 (8%)
Query: 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTN 119
+GID GTTNS +A+ + KVI++ + P+ + F +G
Sbjct: 22 VGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNN-FTIGN----------NK 70
Query: 120 TLFGTKRLIGRKFDDP-QTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKM 178
L KRL G+ + T +V + + AN +Q +I A + +
Sbjct: 71 GLRSIKRLFGKTLKEILNTPALFSLVKDYLDVNSSELKLNFAN-KQLRIPEIAAEIFIYL 129
Query: 179 KETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMN- 237
K AE L +++KAVITVPA+FNDA R A +IAG +V R+I EPTAA+ +YG+N
Sbjct: 130 KNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNK 189
Query: 238 NKEGLIAVFDLGGGTFDVSILEISNGVFE------DE---GIDLSK-------DRLALQR 281
N++G V+DLGGGTFDVSIL I G+F+ D G D+ ++ L
Sbjct: 190 NQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFDLPN 249
Query: 282 LREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCK 341
+ + AK + T D D NI++ + E L+ L+ERT +
Sbjct: 250 SIDTLQLAKKAKETLTYKD----SFNND-------NISINKQTLEQLILPLVERTINIAQ 298
Query: 342 NCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401
CL+ A ++D V+LVGG TR+P +++ + + F ++PD+AV GAA+Q
Sbjct: 299 ECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAEN 356
Query: 402 LRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVL 461
L LL+DV PLSLG+E GGI ++I RNT IP + F+T ADNQT + +L
Sbjct: 357 LIAPHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHIL 416
Query: 462 QGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITI 521
QGEREMA+D +SL FEL G+PP G + EVTF IDA+GI++VSA +K + I +
Sbjct: 417 QGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEV 476
Query: 522 RSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEV 581
+ + G+ + EI+ M++ A +A+ D + L + +A+ I++IE+++ E +
Sbjct: 477 KPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAELTTLLSESE 536
Query: 582 AKEIEDAVADLRKAMGA-------DNVDDIKSKL 608
I + ++++A+ A +++ + KSK+
Sbjct: 537 ISIINSLLDNIKEAVHARDIILINNSIKEFKSKI 570
|
Length = 595 |
| >gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins | Back alignment and domain information |
|---|
Score = 309 bits (794), Expect = 1e-99
Identities = 142/383 (37%), Positives = 216/383 (56%), Gaps = 45/383 (11%)
Query: 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTN 119
+GID G NS VA+ V+ N +R TPS+V+F +K + L+G AK QA++N N
Sbjct: 3 VGIDFGNLNSVVAVARKGGIDVVANEYSNRETPSLVSFGEK-QRLIGEAAKNQAISNFKN 61
Query: 120 TLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEAN--GQQ--YSPSQIGAFVL 175
T+ KRLIGRKFDDP+ QKE++ + +K+V P+G ++ N G++ +SP Q+ A +L
Sbjct: 62 TVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQVLAMLL 121
Query: 176 TKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYG 235
TK+KE AE L V+ VI+VP+YF DAQR+A DA +IAGL+ R++NE TA +L+YG
Sbjct: 122 TKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAYG 181
Query: 236 M------NNKEGLIAVF-----------------------------DLGGGTFDVSILEI 260
+ ++ F +LGG FD ++ E
Sbjct: 182 IYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFNKGKLKVLSTAFDRNLGGRDFDEALFEH 241
Query: 261 SNGVFEDE-GIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNIT 319
F+++ ID+ + A RL A EK K LS+ T+ +N+ + D K ++
Sbjct: 242 FAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLNIECLMED----KDVSGK 297
Query: 320 LTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGK 379
+ R +FE L L+ER P + L +A +T +D+ V +VGG TR+P V+E+++++FGK
Sbjct: 298 IKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKELIAKVFGK 357
Query: 380 SPSKGVNPDEAVALGAAIQGGIL 402
S +N DEAVA G A+Q +L
Sbjct: 358 ELSTTLNADEAVARGCALQCAML 380
|
This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 280 bits (719), Expect = 3e-88
Identities = 143/387 (36%), Positives = 212/387 (54%), Gaps = 46/387 (11%)
Query: 59 IIGIDLGTTNSCVALME---GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVT 115
IIGIDLGTT S V + + G+ +I + G ++ PSVVAF +LVG A QA
Sbjct: 22 IIGIDLGTTYSSVGVYQAGTGET-DIIPDENGRKSIPSVVAFTPGT-VLVGYKAVEQAEH 79
Query: 116 NPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEA----NGQQYSPSQIG 171
NP NT++ KR IG+ F + + E +K+ A+ + + +P +IG
Sbjct: 80 NPQNTIYDAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIG 139
Query: 172 AFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAS 231
+ ++ K+++ AE YLG V KAVI+VPA F++ QR AT A +AGL+V R+INEPTAA+
Sbjct: 140 SRLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAA 199
Query: 232 LSYGMNNKEGL--IAVFDLGGGTFDVSILEISNGVF------------------------ 265
L+YG++ K+ + + V DLGGGT DVS+L G+F
Sbjct: 200 LAYGLHKKQDVFNVLVVDLGGGTLDVSLLNKQGGMFLTRAMAGNNRLGGQDFNQRLLQYL 259
Query: 266 -----EDEG--IDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAK-HLN 317
E G D +D +QRLR+A E AKI L+ T I+L +
Sbjct: 260 YQKIYEKYGKVPDNKED---IQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVKFE 316
Query: 318 ITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIF 377
LTR +FETL +L ++ P + L + ++ ++VDE++LVGG TR+P++++V+ F
Sbjct: 317 YELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGRFF 376
Query: 378 GKSPSKGVNPDEAVALGAAIQGGILRG 404
GK P+ V+P+ AV G AIQ GI+ G
Sbjct: 377 GKDPNTSVDPELAVVTGVAIQAGIIGG 403
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 231 bits (590), Expect = 7e-70
Identities = 119/378 (31%), Positives = 199/378 (52%), Gaps = 42/378 (11%)
Query: 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTN 119
IG+ G T++C+A+ + V+ N G R TP+VVAF E++VG AK+ + N N
Sbjct: 3 IGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVVAFTDT-EVIVGLAAKQGRIRNAAN 61
Query: 120 TLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAW-VEANGQQY--SPSQIGAFVLT 176
T+ K+++GR + DP QKE S KI+ + + + SP ++ +
Sbjct: 62 TIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIFK 121
Query: 177 KMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGM 236
KMKE A+S LG VITVP YF++ Q+ A ++A AG +V RII+EP+AA+L+YG+
Sbjct: 122 KMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYGI 181
Query: 237 ----NNKEGLIAVFDLGGGTFDVSILEISNGVFEDEG----------------------- 269
+ + V+ LGG + DV+IL +++G++
Sbjct: 182 GQDSPTGKSYVLVYRLGGTSTDVTILRVNSGMYRVLATSTDDNLGGESFTETLSQYLANE 241
Query: 270 ------IDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRS 323
D+ + A+ +L AAE AK LS T N F+ + +++R+
Sbjct: 242 FKRKWKQDVRGNARAMMKLNNAAEVAKQILS--TLPSANC-FVES-LYEGIDFQCSVSRA 297
Query: 324 KFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSP-S 382
+FE+L ++L + P + L+ AN+T D+++V+L GG +R+PK+Q+++ ++F
Sbjct: 298 RFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVL 357
Query: 383 KGVNPDEAVALGAAIQGG 400
++PDE +A+GAA Q G
Sbjct: 358 NSISPDEVIAIGAAKQAG 375
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins | Back alignment and domain information |
|---|
Score = 224 bits (573), Expect = 5e-67
Identities = 129/392 (32%), Positives = 193/392 (49%), Gaps = 57/392 (14%)
Query: 60 IGIDLGTTNSCVALME-GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
+GIDLG+ VAL++ G +++ N E R TPS VAF + GE L G+ A A P
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAF-KGGERLFGSDASSLAARFPQ 59
Query: 119 NTLFGTKRLIGRKFDDPQTQK--EMQMVSYKIVRAPNGDAWVEAN-GQQYSPSQIGAFVL 175
K L+G+ DDP + Y +V G + + G++YS ++ A +L
Sbjct: 60 QVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEEYSVEELVAMIL 119
Query: 176 TKMKETAESYLGKSVSK-AVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSY 234
K+ AE + ++ K VITVP YF AQRQA DA +AGL+V ++N+ TAA+L+Y
Sbjct: 120 NYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNY 179
Query: 235 GM-----NNKEGLIAVFDLGGGTFDVSILEISN----------------GVFEDEGI--- 270
+ NNK + +D+G G+ +++E S GV D +
Sbjct: 180 ALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGGR 239
Query: 271 ----------------------DLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITA 308
D+ + A+ +L + A +AK LS+ ++ +++ +
Sbjct: 240 EFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIESLYD 299
Query: 309 DASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPK 368
D +TR++FE L +L ER AP K L+ A +T KD+D V L+GG TRVPK
Sbjct: 300 D----IDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPK 355
Query: 369 VQEVVSEIFGKSP-SKGVNPDEAVALGAAIQG 399
VQE +SE GK K +N DEA A+GAA
Sbjct: 356 VQEELSEAVGKKKLGKHLNADEAAAMGAAYYA 387
|
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 1e-62
Identities = 133/390 (34%), Positives = 206/390 (52%), Gaps = 55/390 (14%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
++G D+G + +A+ + + N R TPSV++F K +G AK Q +T+
Sbjct: 2 VVGFDVGFQSCYIAVARAGGIETVANEFSDRCTPSVISFGSKNRT-IGVAAKNQQITHAN 60
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEAN--GQQ--YSPSQIGAFV 174
NT+ KR GR F+DP QKE + +SY +V NG V+ G++ +S QI A +
Sbjct: 61 NTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQITAML 120
Query: 175 LTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSY 234
LTK+KETAE+ L K V+ VI+VP++F DA+R++ DA +I GL+ R++N+ TA +L+Y
Sbjct: 121 LTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNY 180
Query: 235 GM--------NNKEGLIAVFDLGGGTFDVSILEISNGV----------------FEDEGI 270
G+ + K ++ D+G F VS + G F+++ +
Sbjct: 181 GIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLV 240
Query: 271 DL--------------SKDRLALQRLREAAEKAKIELSSTTQTDINLP---FIT-ADASG 312
+ SK R AL RL + EK K +L S+ TD+ L F+ D SG
Sbjct: 241 EHFCAEFKTKYKLDAKSKIR-ALLRLYQECEKLK-KLMSSNSTDLPLNIECFMNDKDVSG 298
Query: 313 AKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEV 372
+ RS+FE L +L++R P + L+ ++ +DV V +VGG TR+P V+E
Sbjct: 299 ------KMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKER 352
Query: 373 VSEIFGKSPSKGVNPDEAVALGAAIQGGIL 402
+++ FGK S +N DEAVA G A+Q IL
Sbjct: 353 IAKFFGKDVSTTLNADEAVARGCALQCAIL 382
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 | Back alignment and domain information |
|---|
Score = 200 bits (509), Expect = 4e-58
Identities = 128/389 (32%), Positives = 197/389 (50%), Gaps = 53/389 (13%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
++GIDLG + VA+ + I N R TP+ ++F K +G AK Q ++N
Sbjct: 2 VVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNRS-IGAAAKSQVISNAK 60
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEA----NGQQYSPSQIGAFV 174
NT+ G KR GR F DP Q E ++Y +V+ P G ++ + ++ Q+ A +
Sbjct: 61 NTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVTAML 120
Query: 175 LTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSY 234
LTK+KETAES L K V V++VP ++ DA+R++ DA +IAGL+ R++NE TA +L+Y
Sbjct: 121 LTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAY 180
Query: 235 GM--------NNKEGLIAVFDLGGGTFDVSILEISNGVFE---------------DE--- 268
G+ K + D+G + VS+ + G + DE
Sbjct: 181 GIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKLKVLATAFDTTLGGRKFDEVLV 240
Query: 269 -----------GIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLP---FIT-ADASGA 313
+D+ AL RL + EK K +L S +D+ L F+ D SG
Sbjct: 241 NYFCEEFGKKYKLDIKSKIRALLRLSQECEKLK-KLMSANASDLPLNIECFMNDIDVSG- 298
Query: 314 KHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVV 373
T+ R KF + ++L+ R P ++ L+ A + +D+ V +VGG TR+P V+E +
Sbjct: 299 -----TMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKI 353
Query: 374 SEIFGKSPSKGVNPDEAVALGAAIQGGIL 402
S+ FGK S +N DEAVA G A+Q IL
Sbjct: 354 SKFFGKEVSTTLNADEAVARGCALQCAIL 382
|
Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins | Back alignment and domain information |
|---|
Score = 193 bits (491), Expect = 1e-55
Identities = 117/380 (30%), Positives = 184/380 (48%), Gaps = 46/380 (12%)
Query: 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTN 119
G+DLG NS +A+ + ++ N +R+TPSVV F K L G K + +N N
Sbjct: 1 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYL-GETGKNKQTSNIKN 59
Query: 120 TLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRA--PNGDAWVEANGQQ--YSPSQIGAFVL 175
T+ KR+IG + P ++E + + K+V A V G++ +S +Q+ A +
Sbjct: 60 TVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 119
Query: 176 TKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYG 235
K+K+T + +++ I VP ++ + QR DA RIAGL+ RI+N+ TAA +SYG
Sbjct: 120 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 179
Query: 236 M--------NNKEGLIAVFDLGGGT----------------------------FDVSILE 259
+ K ++A D+G + FD++I E
Sbjct: 180 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQLKVLGTACDKHFGGRDFDLAITE 239
Query: 260 ISNGVF-EDEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNI 318
F ID+ ++ A R+ AAEK K LS+ T N PF ++
Sbjct: 240 HFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANT----NAPFSVESVMNDVDVSS 295
Query: 319 TLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFG 378
L+R + E LV L+ER P L A ++ ++VD V ++GG TR+P +++ +SE FG
Sbjct: 296 QLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFG 355
Query: 379 KSPSKGVNPDEAVALGAAIQ 398
K S +N DEA+A GAA
Sbjct: 356 KPLSTTLNQDEAIAKGAAFI 375
|
This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377 |
| >gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L | Back alignment and domain information |
|---|
Score = 186 bits (473), Expect = 6e-53
Identities = 122/387 (31%), Positives = 197/387 (50%), Gaps = 49/387 (12%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
++GIDLG N +A+ + I N R TP+ ++ + +G AK Q VTN
Sbjct: 2 VVGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACISLGSRTRA-IGNAAKSQIVTNVR 60
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEA----NGQQYSPSQIGAFV 174
NT+ G K+L GR FDDP Q E + Y++ + PNG V+ + ++ Q+ +
Sbjct: 61 NTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVTGML 120
Query: 175 LTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSY 234
L K+KET+E+ L K V+ VI++P++F DA+R++ A ++AGL+ R++NE TA +L+Y
Sbjct: 121 LAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAY 180
Query: 235 G--------MNNKEGLIAVFDLGGGTFDVSILEISNG----------------------- 263
G ++ K + D+G + VS+ + G
Sbjct: 181 GIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGGRNFDEALV 240
Query: 264 -VFEDE-----GIDLSKDRLALQRLREAAEKAKIELSSTTQTD--INLPFITADASGAKH 315
F DE I++ ++ AL RL + EK K +L S +D +N+ D +
Sbjct: 241 DYFCDEFKTKYKINVKENSRALLRLYQECEKLK-KLMSANASDLPLNIECFMNDLDVSSK 299
Query: 316 LNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSE 375
+N R++FE L +L+ R P K ++ AN+ +D+ + +VGG TR+P V+E ++
Sbjct: 300 MN----RAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITS 355
Query: 376 IFGKSPSKGVNPDEAVALGAAIQGGIL 402
F K S +N DEAVA G A+Q IL
Sbjct: 356 FFLKDISTTLNADEAVARGCALQCAIL 382
|
Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 4e-51
Identities = 108/389 (27%), Positives = 174/389 (44%), Gaps = 53/389 (13%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
+IGI+ G T S +A + VI N +G R PS ++++ + E G AK Q + N
Sbjct: 2 VIGINFGNTYSSIACINQGKADVIANEDGERQIPSAISYHGEQEYH-GNQAKAQLIRNAK 60
Query: 119 NTLFGTKRLIGRKFDDP---QTQKEMQMVSYKIVRAPNGDAWVEANGQQ--YSPSQIGAF 173
NT+ + L+G+ F + + I E ++ + ++
Sbjct: 61 NTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEVTVR 120
Query: 174 VLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLS 233
L ++KE AE +LGK V+ AV++VP +F+D Q +A A AGL V ++I EP AA L+
Sbjct: 121 FLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALLA 180
Query: 234 YGMNNKEGLIA------VFDLGGGTFDVSILEISNGVF------EDEGI----------- 270
Y A V D GG DVS++ + G++ D G+
Sbjct: 181 YDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRGGLYTILATAHDPGLGGDTLDDALVK 240
Query: 271 ------------DLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNI 318
D + AL +LR +E K LS++T + + + A G +
Sbjct: 241 HFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLSASTSATCS---VESLAEGID-FHS 296
Query: 319 TLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFG 378
++ R +FE L + + + A + + A + D+DEVLLVGG PK+ +S +F
Sbjct: 297 SINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLSYLFP 356
Query: 379 K--------SPSKGVNPDEAVALGAAIQG 399
+ + SK ++P E VA G AIQ
Sbjct: 357 ETTTITAPITVSKALDPSELVARGCAIQA 385
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A, HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 3e-19
Identities = 88/426 (20%), Positives = 147/426 (34%), Gaps = 109/426 (25%)
Query: 59 IIGIDLGTTNS--CVALMEGKNPKVI-------ENSEGSRTTPSVVAFNQKGELL-VGTP 108
++GID GTT S A ++ P + G P+ + ++ +G+L+ G
Sbjct: 2 VVGIDFGTTFSGVAYAFLDSSPPDIRVITRWPGGEGRGYCKVPTEILYDPEGKLVAWGYE 61
Query: 109 AKRQAVTNPTNTLFGTKRLIGRKFD---DPQTQKEMQMVSYKIVRAPNGDAWVEANGQQY 165
A+R L F DP K K
Sbjct: 62 AER---EYAELEAEDEGWLFFEWFKLLLDPDALKLQGDDKLK------------PLPPGK 106
Query: 166 SPSQIGAFVLTKMKETAESYLGKSVSKA---------VITVPAYFNDAQRQATKDAGRIA 216
+ + A L + E A L K+ V+TVPA ++DA +QA ++A A
Sbjct: 107 TAVDVIADYLRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKA 166
Query: 217 GLDVQR-------IINEPTAASL--------SYGMNNKEGLIAVFDLGGGTFDVSILEIS 261
GL R I+ EP AA+L S + +G + V D GGGT D+++ E++
Sbjct: 167 GLVSSREGPDRLLIVLEPEAAALYCLKLLLISLNLKPGDGFL-VCDAGGGTVDLTVYEVT 225
Query: 262 N------------------GVFEDEG-IDLSKDRLALQRLREAAEKAKIEL--------- 293
+ F D +L K+RL ++ + L
Sbjct: 226 SVEPLRLKELAAGSGGLCGSTFVDRAFEELLKERLGELFYELPSKSPALWLILMRFFETI 285
Query: 294 -----SSTTQTDINLPFITA-----DASGAKHLNITLTRSK----FETLVNNLIERTRAP 339
+ T+I LP A G ++ + ++ F+ ++ +I+
Sbjct: 286 KRSFGGTDNDTNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLFDPVIEEIIDLIEEQ 345
Query: 340 CKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGK------SPSKGVNPDEAVAL 393
+ K + + LVGG P ++ + E F P +P AV
Sbjct: 346 LEQAEKGDKVKY-----IFLVGGFGESPYLRSRLKERFSSRGIRVLRP---PDPQLAVVR 397
Query: 394 GAAIQG 399
GA + G
Sbjct: 398 GAVLFG 403
|
Human HSPA12A (also known as 70-kDa heat shock protein-12A) and HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2) belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A or HSPA12B. The gene encoding HSPA12A maps to 10q26.12, a cytogenetic region that might represent a common susceptibility locus for both schizophrenia and bipolar affective disorder; reduced expression of HSPA12A has been shown in the prefrontal cortex of subjects with schizophrenia. HSPA12A is also a candidate gene for forelimb-girdle muscular anomaly, an autosomal recessive disorder of Japanese black cattle. HSPA12A is predominantly expressed in neuronal cells. It may also play a role in the atherosclerotic process. The gene encoding HSPA12B maps to 20p13. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 404 |
| >gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 4e-18
Identities = 58/215 (26%), Positives = 88/215 (40%), Gaps = 33/215 (15%)
Query: 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQ-----KGELLVGTPAKRQAV 114
+GID GT+NS VA+ P+++ GS T PS + F + E+L G A +
Sbjct: 1 LGIDFGTSNSAVAVARDGQPRLVPLEGGSTTLPSALFFPHEESALEREVLFGRAAIAAYL 60
Query: 115 TNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFV 174
P M+ S K + G++ + + A
Sbjct: 61 EGPGEGRL------------------MR--SLKSFLGSSLFRETRIFGRRLTFEDLVARF 100
Query: 175 LTKMKETAESYLGKSVSKAVITVPAYFNDAQ----RQATKD---AGRIAGLDVQRIINEP 227
L ++K+ AE+ LG + + VI P +F QA A R AG EP
Sbjct: 101 LAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAAARAAGFKDVEFQYEP 160
Query: 228 TAASLSYGMN-NKEGLIAVFDLGGGTFDVSILEIS 261
AA+L Y +E L+ V D+GGGT D S++ +
Sbjct: 161 IAAALDYEQRLTREELVLVVDIGGGTSDFSLVRLG 195
|
This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415 |
| >gnl|CDD|177741 PLN00130, PLN00130, succinate dehydrogenase (SDH3); Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (202), Expect = 9e-18
Identities = 36/69 (52%), Positives = 47/69 (68%)
Query: 1 MATSVLLRQLRRRDVASAPISAYKCFTSNIKPSWAPSNLGKSWASLTRPFSSKPAGNDII 60
MA + L R +RRRDV SAP+S YK N +PSW S +G+++AS +R F SKP NDI+
Sbjct: 1 MAATALFRSIRRRDVVSAPLSVYKSLAGNAQPSWGSSYIGQNYASFSRAFGSKPVVNDIL 60
Query: 61 GIDLGTTNS 69
G LGT N+
Sbjct: 61 GTGLGTNNA 69
|
Length = 213 |
| >gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 4e-15
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 281 RLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPC 340
RL A E AKI LSS +T I+L F+ L +TR++FE + +ER A
Sbjct: 302 RLARAVEAAKIALSSQDETRIDLDFV------EVGLEAPVTRAEFEGAIAPDLERIEAAV 355
Query: 341 KNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAI 397
L A ++ +D V L GG + VP V++ + F + + +VA G A+
Sbjct: 356 DEALAQAGVSPDAIDRVFLTGGSSLVPAVRQAFAARFPAARIVEGDAFGSVASGLAL 412
|
This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415 |
| >gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-07
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 174 VLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLS 233
++ ++K+T E LG ++ A +P + + + AG++V +++EPTAA+
Sbjct: 45 IVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAV 104
Query: 234 YGMNNKEGLIAVFDLGGGTFDVSILE 259
+ N AV D+GGGT +SIL+
Sbjct: 105 LQIKNG----AVVDVGGGTTGISILK 126
|
Length = 239 |
| >gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 3e-07
Identities = 64/239 (26%), Positives = 104/239 (43%), Gaps = 53/239 (22%)
Query: 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPS-------------------VVAFNQK 100
IG D GT N VA+M P+++ S PS V A++ +
Sbjct: 3 IGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDE 62
Query: 101 GELLVGTP--AKRQAVTNPT-NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAW 157
+ L+ R+ + T ++F + + +DP+ V + V++P ++
Sbjct: 63 RQALLRRAIRYNREEDIDVTAQSVFFGLAALAQYLEDPEE------VYF--VKSPK--SF 112
Query: 158 VEANGQQYSPSQIGAF--VLTKM----KETAESYLGKSVSKAVITVPAYFN-----DAQR 206
+ A+G P Q+ F ++ M K+ AE+ L ++++AVI P F +A R
Sbjct: 113 LGASG--LKPQQVALFEDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANR 170
Query: 207 QA----TKDAGRIAGL-DVQRIINEPTAASLSYGMN-NKEGLIAVFDLGGGTFDVSILE 259
QA + A R AG DV EP AA L + +E + V D+GGGT D S+L
Sbjct: 171 QAEGILERAAKR-AGFKDV-EFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLL 227
|
Length = 450 |
| >gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 8e-07
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 174 VLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLS 233
++ ++K+T E LG + A +P + + + AGL+V +++EPTAA+
Sbjct: 77 IVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADV 136
Query: 234 YGMNNKEGLIAVFDLGGGTFDVSILE 259
+++ V D+GGGT +SI++
Sbjct: 137 LQLDDG----GVVDIGGGTTGISIVK 158
|
Length = 277 |
| >gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 170 IGAF-VLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPT 228
IGA ++ ++K T E LG+ ++ A +P ++ +A + AGL+V +++EPT
Sbjct: 67 IGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPT 126
Query: 229 AASLSYGMNNKEGLIAVFDLGGGTFDVSILE 259
AA+ G++N AV D+GGGT +SIL+
Sbjct: 127 AAAAVLGIDNG----AVVDIGGGTTGISILK 153
|
Length = 267 |
| >gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 4e-06
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 274 KDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLI 333
+ RL+ + +R +AE+AKI LS +T +L FI+ L +++ E ++ +
Sbjct: 330 RQRLSYRLVR-SAEEAKIALSDQAETRASLDFISDG------LATEISQQGLEEAISQPL 382
Query: 334 ERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSP 381
R + L A DV + L GG R P ++ +++ P
Sbjct: 383 ARILELVQLALDQAQ-VKPDV--IYLTGGSARSPLIRAALAQQLPGIP 427
|
Length = 450 |
| >gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 76/274 (27%), Positives = 111/274 (40%), Gaps = 89/274 (32%)
Query: 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQK-GELL-VGTPAKRQAVTNP 117
IGIDLGT N+ + ++GK + E PSVVA N K ++L VG AK
Sbjct: 4 IGIDLGTANT-LVYVKGKGIVLNE--------PSVVAINTKTKKVLAVGNEAK------- 47
Query: 118 TNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTK 177
+++GR T + V P + G +
Sbjct: 48 --------KMLGR------TPGNIVAVR---------------------PLKDGVIADFE 72
Query: 178 MKETAESYLGKSVSKA--------VITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTA 229
+ E Y K V VI VP+ + +R+A K+A + AG +I EP A
Sbjct: 73 VTEAMLKYFIKKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMA 132
Query: 230 ASLSYGMNNKE--GLIAVFDLGGGTFDVSILEISNGVFEDEGIDLSKD-RLALQRLREA- 285
A++ G+ +E G + V D+GGGT +V++ IS G GI SK R+A + EA
Sbjct: 133 AAIGAGLPVEEPTGNM-VVDIGGGTTEVAV--ISLG-----GIVTSKSVRVAGDEMDEAI 184
Query: 286 ----------------AEKAKIELSSTTQTDINL 303
AE+ KIE+ S T+
Sbjct: 185 IKYIRKKYNLLIGERTAERIKIEIGSAYPTEEEE 218
|
This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl. Length = 327 |
| >gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 5e-05
Identities = 89/362 (24%), Positives = 145/362 (40%), Gaps = 76/362 (20%)
Query: 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQ--KGELLVGTPAKRQAVTNP 117
IGIDLGT N L+ KN +I N PSVVA + K L +GT AK P
Sbjct: 7 IGIDLGTAN---ILVYSKNKGIILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTP 57
Query: 118 TNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTK 177
+ VR P D + + + +L +
Sbjct: 58 GKIV--------------------------AVR-PMKDGVI-------ADYDMTTDLLKQ 83
Query: 178 MKETAESYLGKSVSK--AVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYG 235
+ + A +G + K V+ P+ +R+A DA + G +I EP AA++
Sbjct: 84 IMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIGAD 143
Query: 236 MNNKEGLI-AVFDLGGGTFDVSILEISNGVFEDEGIDLSKDRL---ALQRLRE------- 284
+ E + V D+GGGT +V+I+ GV I + D+L + +R+
Sbjct: 144 LPVDEPVANVVVDIGGGTTEVAIISFG-GVVSCHSIRIGGDQLDEDIVSFVRKKYNLLIG 202
Query: 285 --AAEKAKIELSSTTQTDINLPFITADASGAKHLN-----ITLTRSKFETLVN----NLI 333
AE+ K+E+ I T + G + ITL + + + +++
Sbjct: 203 ERTAEQVKMEIGYAL---IEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHIL 259
Query: 334 ERTRAPCKNCLKDANITTKDVDE-VLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVA 392
E RA ++C + ++ VD V+L GG + ++E +SE NP E+VA
Sbjct: 260 EAIRATLEDCPPE--LSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVA 317
Query: 393 LG 394
+G
Sbjct: 318 IG 319
|
Length = 335 |
| >gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 7e-05
Identities = 68/265 (25%), Positives = 112/265 (42%), Gaps = 67/265 (25%)
Query: 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQK-GELL-VGTPAKRQAVTNP 117
IGIDLGT N+ V + +GK V+ +E PSVVA + K G++L VG A
Sbjct: 1 IGIDLGTANTLVYV-KGKG-IVL--NE-----PSVVAIDTKTGKILAVGEEA-------- 43
Query: 118 TNTLFGTKRLIGRKFDDPQTQKEMQ---MVSYKIVRAPNGDAWVEANGQQYSPSQIGAFV 174
K ++GR + + + ++ + ++ A + F
Sbjct: 44 -------KEMLGRTPGNIEVIRPLKDGVIADFEATEA-----------------MLRYF- 78
Query: 175 LTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSY 234
+ K+K + VI VP+ + +R+A DA AG +I EP AA++
Sbjct: 79 IKKVK----GRSLFFRPRVVICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGA 134
Query: 235 GMN-NKEGLIAVFDLGGGTFDVSILEIS-NGVFEDEGIDLSKDRL--ALQR-LRE----- 284
G++ + V D+GGGT ++++ IS G+ + I + D A+ R +R
Sbjct: 135 GLDIFEPKGNMVVDIGGGTTEIAV--ISLGGIVVSKSIRVGGDDFDEAIIRYVRRKYNLL 192
Query: 285 ----AAEKAKIELSSTTQTDINLPF 305
AE+ KIE+ S D
Sbjct: 193 IGERTAEEIKIEIGSAYPLDEEETM 217
|
MreB is a bacterial protein which assembles into filaments resembling those of eukaryotic F-actin. It is involved in determining the shape of rod-like bacterial cells, by assembling into large fibrous spirals beneath the cell membrane. MreB has also been implicated in chromosome segregation; specifically MreB is thought to bind to and segregate the replication origin of bacterial chromosomes. Length = 320 |
| >gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 9e-05
Identities = 72/259 (27%), Positives = 108/259 (41%), Gaps = 72/259 (27%)
Query: 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGE----LLVGTPAKRQAVT 115
IGIDLGT N+ V K ++ N PSVVA +G+ L VG AK+
Sbjct: 9 IGIDLGTANTLVY---VKGKGIVLNE------PSVVAIESEGKTKVVLAVGEEAKQ---- 55
Query: 116 NPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVL 175
++GR + +R P D V A+ + + + F
Sbjct: 56 -----------MLGR-----------TPGNIVAIR-PMKDG-VIAD-FEVTELMLKYF-- 88
Query: 176 TKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYG 235
+K+ ++ + VI VP+ D +R+A K+A AG +I EP AA++ G
Sbjct: 89 --IKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAG 146
Query: 236 MNNKEGLIA-VFDLGGGTFDVSILEISNGVFEDEGIDLSK-DRLALQRLREA-------- 285
+ E + V D+GGGT +V++ IS G GI S R+ ++ EA
Sbjct: 147 LPIMEPTGSMVVDIGGGTTEVAV--ISLG-----GIVSSSSVRVGGDKMDEAIIVYVRKK 199
Query: 286 ---------AEKAKIELSS 295
AEK KIE+ S
Sbjct: 200 YNLLIGERTAEKIKIEIGS 218
|
Length = 342 |
| >gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 9e-05
Identities = 63/255 (24%), Positives = 102/255 (40%), Gaps = 63/255 (24%)
Query: 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGE------LLVGTPAKRQA 113
IGIDLGT N+ V ++G+ + E PSVVA + L VG AK
Sbjct: 5 IGIDLGTANTLV-YVKGRGIVLNE--------PSVVAIRTDRDAKTKSILAVGHEAKEML 55
Query: 114 VTNPTNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAF 173
P N + G D T+K M+ Y I + + ++ +
Sbjct: 56 GKTPGNIVAIRPMKDGVIADFEVTEK---MIKYFIKQVHSRKSFFK-------------- 98
Query: 174 VLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLS 233
+ VI VP+ +R+A K++ AG +I EP AA++
Sbjct: 99 -----------------PRIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIG 141
Query: 234 YGMNNKEGLIA-VFDLGGGTFDVSILEISNGVFEDEGIDLSKDRL---ALQRLR------ 283
G+ +E + V D+GGGT +V+++ + G+ I + D + +R
Sbjct: 142 AGLPVEEPTGSMVVDIGGGTTEVAVISL-GGIVVSRSIRVGGDEFDEAIINYIRRTYNLL 200
Query: 284 ---EAAEKAKIELSS 295
+ AE+ KIE+ S
Sbjct: 201 IGEQTAERIKIEIGS 215
|
MreB (mecillinam resistance) in E. coli (also called envB) and the paralogous pair MreB and Mrl of Bacillus subtilis have all been shown to help determine cell shape. This protein is present in a wide variety of bacteria, including spirochetes, but is missing from the Mycoplasmas and from Gram-positive cocci. Most completed bacterial genomes have a single member of this family. In some species it is an essential gene. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 333 |
| >gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-04
Identities = 69/275 (25%), Positives = 112/275 (40%), Gaps = 97/275 (35%)
Query: 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQK-GELL-VGTPAKRQAVTNP 117
IGIDLGT N+ V ++GK ++ N PSVVA + K G++L VG AK
Sbjct: 11 IGIDLGTANTLVY-VKGK--GIVLNE------PSVVAIDTKTGKVLAVGEEAK------- 54
Query: 118 TNTLFGTKRLIGRKFDDPQTQKEM------------QMVSYKIVRAPNGDAWVEANGQQY 165
++GR + + + + M+ Y I +A
Sbjct: 55 --------EMLGRTPGNIEAIRPLKDGVIADFEATEAMLRYFIKKARGR----------- 95
Query: 166 SPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGL-DVQRII 224
+ K + VI VP+ + +R+A ++A AG +V +I
Sbjct: 96 ------------------RFFRKP--RIVICVPSGITEVERRAVREAAEHAGAREV-YLI 134
Query: 225 NEPTAASLSYGMNNKEGLIA------VFDLGGGTFDVSILEIS-NGVFEDEGIDLSKDRL 277
EP AA++ G+ + V D+GGGT +V++ IS G+ E I ++ D +
Sbjct: 135 EEPMAAAIGAGLP-----VTEPVGNMVVDIGGGTTEVAV--ISLGGIVYSESIRVAGDEM 187
Query: 278 --ALQR-LRE---------AAEKAKIELSSTTQTD 300
A+ + +R AE+ KIE+ S D
Sbjct: 188 DEAIVQYVRRKYNLLIGERTAEEIKIEIGSAYPLD 222
|
Length = 335 |
| >gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 11/118 (9%)
Query: 172 AFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQAT----------KDAGRIAGLDVQ 221
L ++ + A L + IT P R+ A G
Sbjct: 44 EEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLLIPLALALEDLGGVPV 103
Query: 222 RIINEPTAASLSYGMNNKEGL-IAVFDLGGGTFDVSILEISNGVFEDEGIDLSKDRLA 278
++N+ AA+L+ G+ KE + V DLG GT ++I+E G G + LA
Sbjct: 104 AVVNDAVAAALAEGLFGKEEDTVLVVDLGTGTTGIAIVEDGKGGVGAAGELGIAEALA 161
|
This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185 |
| >gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 344 LKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILR 403
L++A + + L+GG + P ++++++IFG +P +E ALGAAI
Sbjct: 383 LREAGGI--PIQSIRLIGGGAKSPAWRQMLADIFG-TPVDVPEGEEGPALGAAILAAWAL 439
Query: 404 G 404
G
Sbjct: 440 G 440
|
This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see PMID:9324246), was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization [Energy metabolism, Sugars]. Length = 481 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 651 | |||
| KOG0100 | 663 | consensus Molecular chaperones GRP78/BiP/KAR2, HSP | 100.0 | |
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 100.0 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 100.0 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 100.0 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 100.0 | |
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 100.0 | |
| KOG0102 | 640 | consensus Molecular chaperones mortalin/PBP74/GRP7 | 100.0 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 100.0 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 100.0 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 100.0 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 100.0 | |
| KOG0101 | 620 | consensus Molecular chaperones HSP70/HSC70, HSP70 | 100.0 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 100.0 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 100.0 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 100.0 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 100.0 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 100.0 | |
| KOG0103 | 727 | consensus Molecular chaperones HSP105/HSP110/SSE1, | 100.0 | |
| KOG0104 | 902 | consensus Molecular chaperones GRP170/SIL1, HSP70 | 100.0 | |
| PRK11678 | 450 | putative chaperone; Provisional | 100.0 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 100.0 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 100.0 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 100.0 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 100.0 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 100.0 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 99.96 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 99.96 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 99.94 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 99.93 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 99.89 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 99.88 | |
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 99.81 | |
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 99.67 | |
| PLN00130 | 213 | succinate dehydrogenase (SDH3); Provisional | 99.62 | |
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 99.57 | |
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 99.48 | |
| PRK13917 | 344 | plasmid segregation protein ParM; Provisional | 99.42 | |
| PTZ00280 | 414 | Actin-related protein 3; Provisional | 99.29 | |
| TIGR03739 | 320 | PRTRC_D PRTRC system protein D. A novel genetic sy | 99.14 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 99.14 | |
| PTZ00452 | 375 | actin; Provisional | 99.12 | |
| PF00022 | 393 | Actin: Actin; InterPro: IPR004000 Actin [, ] is a | 99.09 | |
| PF06406 | 318 | StbA: StbA protein; InterPro: IPR009440 This entry | 99.07 | |
| PTZ00281 | 376 | actin; Provisional | 99.04 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 98.98 | |
| PTZ00004 | 378 | actin-2; Provisional | 98.96 | |
| PTZ00466 | 380 | actin-like protein; Provisional | 98.91 | |
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 98.79 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 98.75 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 98.71 | |
| PRK10719 | 475 | eutA reactivating factor for ethanolamine ammonia | 98.7 | |
| PF07520 | 1002 | SrfB: Virulence factor SrfB; InterPro: IPR009216 T | 98.52 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 98.45 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 98.41 | |
| KOG0679 | 426 | consensus Actin-related protein - Arp4p/Act3p [Cyt | 98.23 | |
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 98.21 | |
| PRK13317 | 277 | pantothenate kinase; Provisional | 97.98 | |
| COG5277 | 444 | Actin and related proteins [Cytoskeleton] | 97.92 | |
| COG4457 | 1014 | SrfB Uncharacterized protein conserved in bacteria | 97.49 | |
| PF08841 | 332 | DDR: Diol dehydratase reactivase ATPase-like domai | 97.48 | |
| PF06277 | 473 | EutA: Ethanolamine utilisation protein EutA; Inter | 97.41 | |
| TIGR02259 | 432 | benz_CoA_red_A benzoyl-CoA reductase, bcr type, su | 97.38 | |
| KOG0797 | 618 | consensus Actin-related protein [Cytoskeleton] | 97.12 | |
| KOG0676 | 372 | consensus Actin and related proteins [Cytoskeleton | 96.91 | |
| PF02782 | 198 | FGGY_C: FGGY family of carbohydrate kinases, C-ter | 96.78 | |
| PRK15027 | 484 | xylulokinase; Provisional | 96.14 | |
| PLN02669 | 556 | xylulokinase | 95.99 | |
| TIGR01315 | 541 | 5C_CHO_kinase FGGY-family pentulose kinase. This m | 95.84 | |
| PF01968 | 290 | Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr | 95.43 | |
| PRK00047 | 498 | glpK glycerol kinase; Provisional | 95.32 | |
| PRK04123 | 548 | ribulokinase; Provisional | 95.22 | |
| TIGR01311 | 493 | glycerol_kin glycerol kinase. This model describes | 95.21 | |
| TIGR01312 | 481 | XylB D-xylulose kinase. D-xylulose kinase (XylB) g | 95.2 | |
| TIGR02628 | 465 | fuculo_kin_coli L-fuculokinase. Members of this fa | 95.15 | |
| PTZ00294 | 504 | glycerol kinase-like protein; Provisional | 95.12 | |
| TIGR01234 | 536 | L-ribulokinase L-ribulokinase. This enzyme catalyz | 95.01 | |
| PRK10331 | 470 | L-fuculokinase; Provisional | 94.92 | |
| TIGR01314 | 505 | gntK_FGGY gluconate kinase, FGGY type. Gluconate i | 94.75 | |
| PLN02295 | 512 | glycerol kinase | 94.62 | |
| TIGR02627 | 454 | rhamnulo_kin rhamnulokinase. This model describes | 94.6 | |
| COG4819 | 473 | EutA Ethanolamine utilization protein, possible ch | 94.48 | |
| KOG2517 | 516 | consensus Ribulose kinase and related carbohydrate | 94.41 | |
| PRK10939 | 520 | autoinducer-2 (AI-2) kinase; Provisional | 94.35 | |
| PRK10854 | 513 | exopolyphosphatase; Provisional | 94.18 | |
| smart00842 | 187 | FtsA Cell division protein FtsA. FtsA is essential | 94.17 | |
| PRK10640 | 471 | rhaB rhamnulokinase; Provisional | 94.07 | |
| PRK13321 | 256 | pantothenate kinase; Reviewed | 93.83 | |
| KOG2531 | 545 | consensus Sugar (pentulose and hexulose) kinases [ | 93.6 | |
| PRK11031 | 496 | guanosine pentaphosphate phosphohydrolase; Provisi | 93.3 | |
| PRK13318 | 258 | pantothenate kinase; Reviewed | 93.17 | |
| KOG0677 | 389 | consensus Actin-related protein Arp2/3 complex, su | 92.89 | |
| PRK09698 | 302 | D-allose kinase; Provisional | 92.84 | |
| COG1548 | 330 | Predicted transcriptional regulator/sugar kinase [ | 92.77 | |
| PF13941 | 457 | MutL: MutL protein | 92.77 | |
| COG0248 | 492 | GppA Exopolyphosphatase [Nucleotide transport and | 92.76 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 92.47 | |
| COG1070 | 502 | XylB Sugar (pentulose and hexulose) kinases [Carbo | 92.36 | |
| KOG0680 | 400 | consensus Actin-related protein - Arp6p [Cytoskele | 91.55 | |
| TIGR03706 | 300 | exo_poly_only exopolyphosphatase. It appears that | 90.53 | |
| COG1521 | 251 | Pantothenate kinase type III (Bvg accessory factor | 90.42 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 89.98 | |
| KOG1385 | 453 | consensus Nucleoside phosphatase [Nucleotide trans | 89.95 | |
| COG1940 | 314 | NagC Transcriptional regulator/sugar kinase [Trans | 89.91 | |
| COG1069 | 544 | AraB Ribulose kinase [Energy production and conver | 88.87 | |
| TIGR03281 | 326 | methan_mark_12 putative methanogenesis marker prot | 88.63 | |
| PF01869 | 271 | BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In | 88.5 | |
| PF02541 | 285 | Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I | 88.02 | |
| COG5026 | 466 | Hexokinase [Carbohydrate transport and metabolism] | 86.67 | |
| PLN02666 | 1275 | 5-oxoprolinase | 85.99 | |
| KOG0681 | 645 | consensus Actin-related protein - Arp5p [Cytoskele | 85.24 | |
| PF07318 | 343 | DUF1464: Protein of unknown function (DUF1464); In | 84.61 | |
| TIGR00744 | 318 | ROK_glcA_fam ROK family protein (putative glucokin | 82.94 | |
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 82.5 | |
| COG0554 | 499 | GlpK Glycerol kinase [Energy production and conver | 81.93 | |
| PRK00976 | 326 | hypothetical protein; Provisional | 81.06 |
| >KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-130 Score=972.72 Aligned_cols=566 Identities=52% Similarity=0.849 Sum_probs=544.9
Q ss_pred CCcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCCh
Q 047849 56 GNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDP 135 (651)
Q Consensus 56 ~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~ 135 (651)
...|||||||||||||+++++|+++||.|.+|+|.+||+|+|+++ ++++|++|+++...||+||+++.||+||+.|+++
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~d-erLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~ 113 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDK 113 (663)
T ss_pred cceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccc-hhhhhhHhhcccccCcccceechHHHhCcccCCh
Confidence 457999999999999999999999999999999999999999866 9999999999999999999999999999999999
Q ss_pred HHHHHhhcceeEEEECCCCCeEEE--eC---CeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHH
Q 047849 136 QTQKEMQMVSYKIVRAPNGDAWVE--AN---GQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATK 210 (651)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~g~~~v~--~~---~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~ 210 (651)
.+|++.++|||+++. .+++++|+ .+ .+.|+|+++++|+|.++++.|+.|+|.+++++|+||||||+++||++++
T Consensus 114 ~vq~Dik~~Pfkvv~-k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATK 192 (663)
T KOG0100|consen 114 SVQKDIKFLPFKVVN-KDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATK 192 (663)
T ss_pred hhhhhhhcCceEEEc-CCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhc
Confidence 999999999999986 56666655 22 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEeecchHHHhhhhccccCCC--eEEEEEeCCcceEEEEEEEeccccc----------------------
Q 047849 211 DAGRIAGLDVQRIINEPTAASLSYGMNNKEG--LIAVFDLGGGTFDVSILEISNGVFE---------------------- 266 (651)
Q Consensus 211 ~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~--~vlVvD~GggT~Dvsv~~~~~~~~~---------------------- 266 (651)
+|..+|||+++|+|+||+|||++|+++++++ ++||||+||||||||++.+++|+|+
T Consensus 193 DAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~ 272 (663)
T KOG0100|consen 193 DAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEY 272 (663)
T ss_pred ccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHH
Confidence 9999999999999999999999999998875 9999999999999999999999987
Q ss_pred -------ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHH
Q 047849 267 -------DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAP 339 (651)
Q Consensus 267 -------~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~ 339 (651)
+++.|++++.+++.+|+++||+||+.||++.++.+.|+.++++ .||+-++||+.||++.-+++..++.+
T Consensus 273 fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG----~DfSEtLtRAkFEElNmDLFr~TlkP 348 (663)
T KOG0100|consen 273 FIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDG----VDFSETLTRAKFEELNMDLFRKTLKP 348 (663)
T ss_pred HHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeecccc----ccccchhhhhHHHHhhhHHHHHhhHH
Confidence 6789999999999999999999999999999999999999987 89999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHh-cCCCCCcCCccchheehhHHHhhhccCC--cceeEEEeccc
Q 047849 340 CKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIF-GKSPSKGVNPDEAVALGAAIQGGILRGD--VKELLLLDVTP 416 (651)
Q Consensus 340 i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f-~~~~~~~~~p~~aVA~GAa~~a~~l~~~--~~~~~~~d~~~ 416 (651)
++++|+++++.+.+|+.|+|||||+|||.||++|+++| |+++.+.+||++|||+|||.+|..+|+. ..++++.|++|
T Consensus 349 v~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLLDv~p 428 (663)
T KOG0100|consen 349 VQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDVNP 428 (663)
T ss_pred HHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEEEeecc
Confidence 99999999999999999999999999999999999999 8999999999999999999999999984 57899999999
Q ss_pred CccceeecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEE
Q 047849 417 LSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTF 496 (651)
Q Consensus 417 ~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f 496 (651)
+++|||+.+|.|..+|||||.||+++++.|+|+.|+|..+.|++|+||+++..+|+.||.|.+.|+||+|+|.|+|+|+|
T Consensus 429 LtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtF 508 (663)
T KOG0100|consen 429 LTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTF 508 (663)
T ss_pred ccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCeeEEEEEEecCCCceeeEEecCC-CCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHh---h
Q 047849 497 DIDANGIVTVSAKDKATGKEQQITIRSS-GGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLG---E 572 (651)
Q Consensus 497 ~~d~~G~l~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~---~ 572 (651)
++|.||+|+|+|.|+.||++.+++|++. ++||+++|++|++++++|+++|+..+++.++||+||+|.|.+++.+. +
T Consensus 509 evDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkek 588 (663)
T KOG0100|consen 509 EVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEK 588 (663)
T ss_pred EEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhH
Confidence 9999999999999999999999999986 78999999999999999999999999999999999999999999995 3
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 047849 573 YREKIPSEVAKEIEDAVADLRKAMGADN---VDDIKSKLDAANKAVSKIGQHMAGGSG 627 (651)
Q Consensus 573 ~~~~~~~~~~~~~~~~l~~~~~wl~~~~---~~~~~~k~~~l~~~~~~i~~~~~~~~~ 627 (651)
+...+++++++.+..++++..+||+.+. .++++++.++|..++.||.+++|+.+|
T Consensus 589 Lg~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~~ag 646 (663)
T KOG0100|consen 589 LGGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYGGAG 646 (663)
T ss_pred hcccCChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 6688999999999999999999998874 899999999999999999999999776
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-104 Score=888.98 Aligned_cols=569 Identities=64% Similarity=1.009 Sum_probs=535.3
Q ss_pred CcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChH
Q 047849 57 NDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQ 136 (651)
Q Consensus 57 ~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~ 136 (651)
..+||||||||||+||+++++.+++++|..|.+.+||+|+|. ++.++||..|+.+...+|.++++.+||+||+.++++.
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~-~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~ 105 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFK-GSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEH 105 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEEC-CCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHH
Confidence 359999999999999999999999999999999999999996 5678999999999999999999999999999999999
Q ss_pred HHHHhhcceeEEEECCCCCeEEE-eCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHH
Q 047849 137 TQKEMQMVSYKIVRAPNGDAWVE-ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRI 215 (651)
Q Consensus 137 ~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~ 215 (651)
++...+.+||.++...++..++. .+++.|+|++|++++|++|++.|+.++|.++.++|||||+||++.||+++++||++
T Consensus 106 v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~~ 185 (657)
T PTZ00186 106 IQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTI 185 (657)
T ss_pred HHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHHH
Confidence 99999999999998888887776 35788999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----------------------------
Q 047849 216 AGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE---------------------------- 266 (651)
Q Consensus 216 AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~---------------------------- 266 (651)
|||++++||+||+|||++|+.+...+ ++||||+||||||+||+++.++.|+
T Consensus 186 AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~ 265 (657)
T PTZ00186 186 AGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFR 265 (657)
T ss_pred cCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999876544 9999999999999999998877664
Q ss_pred -ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 047849 267 -DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLK 345 (651)
Q Consensus 267 -~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~ 345 (651)
+++.|+..+++++.+|+.+||++|+.||....+.+.++.+..+.+|..++.+.|||++|+++++|+++++..+++++|+
T Consensus 266 ~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~L~ 345 (657)
T PTZ00186 266 KTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMK 345 (657)
T ss_pred hhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778999999999999999999999999999887665555567899999999999999999999999999999
Q ss_pred HcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCccceeecC
Q 047849 346 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLG 425 (651)
Q Consensus 346 ~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~~~~ 425 (651)
++++++.+|+.|+||||+||||.|+++|+++||.++...+||++|||+|||++|+++++.++++.+.|++|++||+++.+
T Consensus 346 ~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~slgie~~~ 425 (657)
T PTZ00186 346 DAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIETLG 425 (657)
T ss_pred HcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccccCceEEEeeccccccceecC
Confidence 99999999999999999999999999999999988889999999999999999999999888999999999999999999
Q ss_pred CeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEE
Q 047849 426 GIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVT 505 (651)
Q Consensus 426 ~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~ 505 (651)
|.|.+|||||++||+++++.|++..|||+.+.|+|||||+..+.+|..||+|+|.++||.|+|.++|+|+|++|.||+|+
T Consensus 426 g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~nGiL~ 505 (657)
T PTZ00186 426 GVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICH 505 (657)
T ss_pred CEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHH
Q 047849 506 VSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEI 585 (651)
Q Consensus 506 v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~ 585 (651)
|++.++.||++..+.|..+..||+++|++++++++++.++|+..+++.+++|++|.+++.+++.+++. ..+++++++.+
T Consensus 506 V~a~d~~tg~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 584 (657)
T PTZ00186 506 VTAKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEW-KYVSDAEKENV 584 (657)
T ss_pred EEEEEccCCcEEEEEeccCccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCCHHHHHHH
Confidence 99999999999999999888899999999999999999999999999999999999999999999753 46899999999
Q ss_pred HHHHHHHHHHhccCC--HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 047849 586 EDAVADLRKAMGADN--VDDIKSKLDAANKAVSKIGQHMAGGSG 627 (651)
Q Consensus 586 ~~~l~~~~~wl~~~~--~~~~~~k~~~l~~~~~~i~~~~~~~~~ 627 (651)
...++.+++||.+++ .+++++++++|++.+.++..++|++++
T Consensus 585 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 628 (657)
T PTZ00186 585 KTLVAELRKAMENPNVAKDDLAAATDKLQKAVMECGRTEYQQAA 628 (657)
T ss_pred HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999754 599999999999999999999987553
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-103 Score=891.22 Aligned_cols=591 Identities=66% Similarity=1.030 Sum_probs=551.1
Q ss_pred cEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHH
Q 047849 58 DIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQT 137 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~ 137 (651)
.+||||||||||+||++++|.++++.|..|+|.+||+|+|.+++++++|..|+.+...+|.++++++||+||+. ++.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~~ 80 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEEV 80 (627)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chHH
Confidence 58999999999999999999999999999999999999997678999999999999999999999999999999 5678
Q ss_pred HHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcC
Q 047849 138 QKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAG 217 (651)
Q Consensus 138 ~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AG 217 (651)
+...+.+||.++..++|...+..+++.++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||++||
T Consensus 81 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AG 160 (627)
T PRK00290 81 QKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAG 160 (627)
T ss_pred HHHhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 88889999999998888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc-----------------------------c
Q 047849 218 LDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE-----------------------------D 267 (651)
Q Consensus 218 l~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~-----------------------------~ 267 (651)
|++++||+||+|||++|+.....+ ++|||||||||||+|++++.++.++ +
T Consensus 161 l~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~ 240 (627)
T PRK00290 161 LEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKE 240 (627)
T ss_pred CceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999876433 9999999999999999998876653 3
Q ss_pred cCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047849 268 EGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDA 347 (651)
Q Consensus 268 ~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a 347 (651)
++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+..|+.++.+.|||++|+++|+|+++++..+|+++|+++
T Consensus 241 ~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~a 320 (627)
T PRK00290 241 NGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDA 320 (627)
T ss_pred hCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45667778899999999999999999999999999988766544557899999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCccceeecCCe
Q 047849 348 NITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGI 427 (651)
Q Consensus 348 ~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~~~~~~ 427 (651)
++++.+|+.|+||||+||+|+|++.|++.||.++..++||++|||+|||++|+.+++.++++.+.|++|++||+++.+|.
T Consensus 321 ~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~~~~~~~~d~~~~slgi~~~~~~ 400 (627)
T PRK00290 321 GLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGGV 400 (627)
T ss_pred CCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCCccceeeeeccceEEEEEecCCe
Confidence 99999999999999999999999999999998888999999999999999999999988999999999999999999999
Q ss_pred EEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEEEE
Q 047849 428 FTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVS 507 (651)
Q Consensus 428 ~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~v~ 507 (651)
+.+|||+|+++|++++++|++..|+|+.+.|++|||++..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|+
T Consensus 401 ~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil~v~ 480 (627)
T PRK00290 401 MTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHVS 480 (627)
T ss_pred EEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHH
Q 047849 508 AKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIED 587 (651)
Q Consensus 508 ~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~ 587 (651)
+.+..+++...+++....+|++++++++++++.++.++|++.+++.+++|+||+|+|.+++.|+++.+.+++++++++.+
T Consensus 481 a~~~~~~~~~~~~i~~~~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~~~~~~~~~~e~~~i~~ 560 (627)
T PRK00290 481 AKDKGTGKEQSITITASSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEA 560 (627)
T ss_pred EEEccCCceeEEEeccccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 99999999999999887789999999999999999999999999999999999999999999987778999999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCC-C-CCCCCCCCCCCCCCchhhhhccC
Q 047849 588 AVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAGGSG-G-GAASGGSQGGEQTPEAEYEEVKK 651 (651)
Q Consensus 588 ~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 651 (651)
.|+++++||+.++.+++++++++|++.+.++..++|++++ + +.++ ..++.++.+++||||||.
T Consensus 561 ~l~~~~~wL~~~~~~~i~~k~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 625 (627)
T PRK00290 561 AIKELKEALKGEDKEAIKAKTEELTQASQKLGEAMYQQAQAAQGAAG-AAAKDDDVVDAEFEEVKD 625 (627)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc-cCCCCCccccCceeecCC
Confidence 9999999999988999999999999999999999987433 1 1111 233346788999999983
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-103 Score=889.53 Aligned_cols=571 Identities=58% Similarity=0.922 Sum_probs=536.7
Q ss_pred CCCcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCC
Q 047849 55 AGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDD 134 (651)
Q Consensus 55 ~~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~ 134 (651)
.+..+||||||||||+||++.+|.+.+++|..|++++||+|+|..++++++|..|+.+...+|.++++++||+||+.+++
T Consensus 37 ~~~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 116 (673)
T PLN03184 37 VAEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE 116 (673)
T ss_pred cCCCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch
Confidence 34569999999999999999999999999999999999999997677899999999999999999999999999999875
Q ss_pred hHHHHHhhcceeEEEECCCCCeEEE--eCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHH
Q 047849 135 PQTQKEMQMVSYKIVRAPNGDAWVE--ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDA 212 (651)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~A 212 (651)
++...+.+||.++..+++.+.+. ..++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 117 --~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 194 (673)
T PLN03184 117 --VDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDA 194 (673)
T ss_pred --hhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 45667889999998888877765 45789999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc-------------------------
Q 047849 213 GRIAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE------------------------- 266 (651)
Q Consensus 213 a~~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~------------------------- 266 (651)
|++|||+++++|+||+|||++|+.....+ ++|||||||||||+|++++.++.|+
T Consensus 195 a~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~ 274 (673)
T PLN03184 195 GRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAS 274 (673)
T ss_pred HHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999886554 9999999999999999998876654
Q ss_pred ----ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHH
Q 047849 267 ----DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKN 342 (651)
Q Consensus 267 ----~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~ 342 (651)
.++.++..+++++.+|+.+||++|+.||.+.++.+.++++..+.++..++.+.|||++|+++|+++++++..+|++
T Consensus 275 ~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~~ 354 (673)
T PLN03184 275 NFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVEN 354 (673)
T ss_pred HHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788999999999999999999999999998877654445568899999999999999999999999999
Q ss_pred HHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCcccee
Q 047849 343 CLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIE 422 (651)
Q Consensus 343 ~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~ 422 (651)
+|+++++++.+|+.|+||||+||||.|+++|++.||..+...+||++|||+|||++|+++++.++++.+.|++|++||++
T Consensus 355 ~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~~~dv~p~slgi~ 434 (673)
T PLN03184 355 ALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGEVSDIVLLDVTPLSLGLE 434 (673)
T ss_pred HHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccCccceEEEecccccceEE
Confidence 99999999999999999999999999999999999988888999999999999999999999888999999999999999
Q ss_pred ecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCe
Q 047849 423 TLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANG 502 (651)
Q Consensus 423 ~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G 502 (651)
+.++.+.+|||+|+++|++++++|++..|+|+.+.|+||||++.++.+|..||+|.|.++|++++|.++|+|+|++|.||
T Consensus 435 ~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~G 514 (673)
T PLN03184 435 TLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANG 514 (673)
T ss_pred ecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHH
Q 047849 503 IVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVA 582 (651)
Q Consensus 503 ~l~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~ 582 (651)
+|+|++.+..++++..+++.....||++++++++++++++.++|+..+++.+++|++|+|||.+++.|+++.++++++++
T Consensus 515 iL~V~a~~~~t~~~~~~~i~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e~~~~~~~eer 594 (673)
T PLN03184 515 ILSVSATDKGTGKKQDITITGASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVK 594 (673)
T ss_pred eEEEEEEecCCCeEEEEEecccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCHHHH
Confidence 99999999999999999998877899999999999999999999999999999999999999999999878889999999
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 047849 583 KEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAGGSG 627 (651)
Q Consensus 583 ~~~~~~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~~~~ 627 (651)
+++.+.|+++++||++++.+++++++++|.+.+.++..++|+++|
T Consensus 595 ~~l~~~l~~~e~wL~~~d~~~ik~~~~~l~~~l~~l~~~~~~~~~ 639 (673)
T PLN03184 595 EKVEAKLKELKDAIASGSTQKMKDAMAALNQEVMQIGQSLYNQPG 639 (673)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999998765
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-103 Score=889.58 Aligned_cols=571 Identities=69% Similarity=1.063 Sum_probs=542.5
Q ss_pred CcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChH
Q 047849 57 NDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQ 136 (651)
Q Consensus 57 ~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~ 136 (651)
..+||||||||||+||++.++.+++++|..|+|.+||+|+|.+++++++|..|+.+..++|.++++++||+||+.++++.
T Consensus 41 ~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 120 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDA 120 (663)
T ss_pred CcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHH
Confidence 35999999999999999999999999999999999999999877899999999999999999999999999999999999
Q ss_pred HHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHc
Q 047849 137 TQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIA 216 (651)
Q Consensus 137 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~A 216 (651)
++...+.+||.++..+++...+..+++.|+|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||++|
T Consensus 121 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~A 200 (663)
T PTZ00400 121 TKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIA 200 (663)
T ss_pred HHhhhccCCeEEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHc
Confidence 99999999999999888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc-----------------------------
Q 047849 217 GLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----------------------------- 266 (651)
Q Consensus 217 Gl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----------------------------- 266 (651)
||+++++|+||+|||++|+.....+ ++|||||||||||+||+++.++.|+
T Consensus 201 Gl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~ 280 (663)
T PTZ00400 201 GLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKK 280 (663)
T ss_pred CCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999876554 9999999999999999998776554
Q ss_pred ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047849 267 DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKD 346 (651)
Q Consensus 267 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~ 346 (651)
.++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+..|..++.++|||++|+++|+|+++++.++++++|++
T Consensus 281 ~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L~~ 360 (663)
T PTZ00400 281 QQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKD 360 (663)
T ss_pred hcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777889999999999999999999999999988877665566789999999999999999999999999999999
Q ss_pred cCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCccceeecCC
Q 047849 347 ANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGG 426 (651)
Q Consensus 347 a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~~~~~ 426 (651)
+++.+.+|+.|+||||+||+|+|+++|++.||.++...+||+++||+|||++|+++++..+++.+.|++|++||+++.+|
T Consensus 361 a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~slgi~~~~g 440 (663)
T PTZ00400 361 AGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIETLGG 440 (663)
T ss_pred cCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCCccceEEEeccccceEEEecCC
Confidence 99999999999999999999999999999999888899999999999999999999998889999999999999999999
Q ss_pred eEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEEE
Q 047849 427 IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTV 506 (651)
Q Consensus 427 ~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~v 506 (651)
.|.+|||+|+++|++++++|++..|+|+.+.|+||||++.++.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|
T Consensus 441 ~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v 520 (663)
T PTZ00400 441 VFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMNI 520 (663)
T ss_pred eeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHH
Q 047849 507 SAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIE 586 (651)
Q Consensus 507 ~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~ 586 (651)
++.++.++++..++|....+||+++++++++++.++.++|++.+++.+++|++|+|+|.+++.|+++.+.+++++++++.
T Consensus 521 ~a~~~~~~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e~~~~~s~~ere~i~ 600 (663)
T PTZ00400 521 SAVDKSTGKKQEITIQSSGGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELK 600 (663)
T ss_pred EEEeccCCcEEEEEeeccccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHH
Confidence 99999999999999988788999999999999999999999999999999999999999999998788899999999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 047849 587 DAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAGGSG 627 (651)
Q Consensus 587 ~~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~~~~ 627 (651)
+.++++++||+.++.+++++++++|++.+.++..++|++++
T Consensus 601 ~~l~~~~~WL~~~d~~~i~~k~~eL~~~l~~l~~k~y~~~~ 641 (663)
T PTZ00400 601 QKITKLRSTLSSEDVDSIKDKTKQLQEASWKISQQAYKQGN 641 (663)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999987554
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-103 Score=889.18 Aligned_cols=590 Identities=49% Similarity=0.780 Sum_probs=542.4
Q ss_pred CCCcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCC
Q 047849 55 AGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDD 134 (651)
Q Consensus 55 ~~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~ 134 (651)
....+||||||||||+||+++++.++++.|..|+|++||+|+|. ++++++|..|+.+..++|.++++++||+||+.+++
T Consensus 2 ~~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~-~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 80 (653)
T PTZ00009 2 TKGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDD 80 (653)
T ss_pred CcccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEEC-CCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCc
Confidence 45569999999999999999999999999999999999999995 56899999999999999999999999999999999
Q ss_pred hHHHHHhhcceeEEEECCCCCeEEE--e--CCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHH
Q 047849 135 PQTQKEMQMVSYKIVRAPNGDAWVE--A--NGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATK 210 (651)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~g~~~v~--~--~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~ 210 (651)
+.++...+.+||.+....++...+. . ..+.|+|++|++++|++|++.|+.++|.++.++|||||+||++.||++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~ 160 (653)
T PTZ00009 81 SVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATK 160 (653)
T ss_pred hhHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHH
Confidence 9999999999999988887766544 2 34789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEeecchHHHhhhhccccCC---CeEEEEEeCCcceEEEEEEEeccccc---------------------
Q 047849 211 DAGRIAGLDVQRIINEPTAASLSYGMNNKE---GLIAVFDLGGGTFDVSILEISNGVFE--------------------- 266 (651)
Q Consensus 211 ~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~---~~vlVvD~GggT~Dvsv~~~~~~~~~--------------------- 266 (651)
+||++|||++++|++||+|||++|+..+.. .++|||||||||||+||+++.++.|+
T Consensus 161 ~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~ 240 (653)
T PTZ00009 161 DAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVE 240 (653)
T ss_pred HHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHH
Confidence 999999999999999999999999986532 38999999999999999998766554
Q ss_pred --------cc-CCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHH
Q 047849 267 --------DE-GIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTR 337 (651)
Q Consensus 267 --------~~-~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~ 337 (651)
++ +.++..+++++.+|+.+||++|+.||.+.++.+.++.+.++ .++.++|||++|+++|+|+++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~----~d~~~~itR~~fe~l~~~l~~~~~ 316 (653)
T PTZ00009 241 FCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEG----IDYNVTISRARFEELCGDYFRNTL 316 (653)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCC----ceEEEEECHHHHHHHHHHHHHHHH
Confidence 11 35666778999999999999999999999999999887665 689999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhc-CCCCCcCCccchheehhHHHhhhccCC----cceeEEE
Q 047849 338 APCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFG-KSPSKGVNPDEAVALGAAIQGGILRGD----VKELLLL 412 (651)
Q Consensus 338 ~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~l~~~----~~~~~~~ 412 (651)
.+|+++|+++++++.+|+.|+||||+||||.|+++|++.|+ ..+...+||++|||+|||++|+++++. ++++.+.
T Consensus 317 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~ 396 (653)
T PTZ00009 317 QPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLL 396 (653)
T ss_pred HHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEE
Confidence 99999999999999999999999999999999999999996 567889999999999999999999863 5789999
Q ss_pred ecccCccceeecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCee
Q 047849 413 DVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQI 492 (651)
Q Consensus 413 d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i 492 (651)
|++|++||++..+|.+.+|||+|+++|++++++|++..|+|+.+.|+||||++..+.+|..||+|.|.++|+.++|.++|
T Consensus 397 dv~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i 476 (653)
T PTZ00009 397 DVTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQI 476 (653)
T ss_pred eecccccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEEcCCeeEEEEEEecCCCceeeEEecCC-CCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047849 493 EVTFDIDANGIVTVSAKDKATGKEQQITIRSS-GGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLG 571 (651)
Q Consensus 493 ~v~f~~d~~G~l~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~ 571 (651)
+|+|++|.||+|+|++.++.++++..+++... ..|++++++++++++.++.++|+..+++.+++|+||+|||+++++|+
T Consensus 477 ~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~ 556 (653)
T PTZ00009 477 EVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQ 556 (653)
T ss_pred EEEEEECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 99999999999999999999999999888754 67999999999999999999999999999999999999999999996
Q ss_pred h--cccCCCHHHHHHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCCCCCCC-------
Q 047849 572 E--YREKIPSEVAKEIEDAVADLRKAMGADN---VDDIKSKLDAANKAVSKIGQHMAGGSG---GGAASGGSQ------- 636 (651)
Q Consensus 572 ~--~~~~~~~~~~~~~~~~l~~~~~wl~~~~---~~~~~~k~~~l~~~~~~i~~~~~~~~~---~~~~~~~~~------- 636 (651)
+ +.+++++++++++.+.++++++||++++ .+++++++++|++.++++..|++++|| ||+++||.|
T Consensus 557 ~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (653)
T PTZ00009 557 DEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGMPGGMPGGA 636 (653)
T ss_pred hhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCC
Confidence 3 7889999999999999999999999753 788999999999999999999998775 455555444
Q ss_pred ---CCCCCCchhhhhc
Q 047849 637 ---GGEQTPEAEYEEV 649 (651)
Q Consensus 637 ---~~~~~~~~~~~~~ 649 (651)
|+|...||++|||
T Consensus 637 ~~~~~~~~~~~~~~~~ 652 (653)
T PTZ00009 637 GPAGAGASSGPTVEEV 652 (653)
T ss_pred CCCCCCCCCCCccccC
Confidence 3456668999998
|
|
| >KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-105 Score=823.54 Aligned_cols=574 Identities=71% Similarity=1.057 Sum_probs=557.6
Q ss_pred CCCCcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCC
Q 047849 54 PAGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFD 133 (651)
Q Consensus 54 ~~~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~ 133 (651)
.....++|||+||||||++++.++++.++.|.+|.|.+||+|+|+.|+++++|..|+++...||.|+++..||+|||.++
T Consensus 24 ~~~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~ 103 (640)
T KOG0102|consen 24 KVKGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFD 103 (640)
T ss_pred CCCCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhcc
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHH
Q 047849 134 DPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAG 213 (651)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa 213 (651)
+++++.+.+..||++++..+|..|++..|+.++|.++.+++|.+++++|++|++..+..+|+||||||++.||+++++|.
T Consensus 104 d~evq~~~k~vpyKiVk~~ngdaw~e~~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag 183 (640)
T KOG0102|consen 104 DPEVQKDIKQVPYKIVKASNGDAWVEARGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAG 183 (640)
T ss_pred CHHHHHHHHhCCcceEEccCCcEEEEeCCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc--------------------------
Q 047849 214 RIAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE-------------------------- 266 (651)
Q Consensus 214 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~-------------------------- 266 (651)
++||++++++++||+|||++|+++++.+ .++|||+||||||++++++.+++|+
T Consensus 184 ~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~~ 263 (640)
T KOG0102|consen 184 QIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSE 263 (640)
T ss_pred hhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHHh
Confidence 9999999999999999999999997765 9999999999999999999998887
Q ss_pred ---ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 047849 267 ---DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNC 343 (651)
Q Consensus 267 ---~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~ 343 (651)
..++|+..+..++.||++++|++|+.||+..+.++.++++..+..|+.++++++||.+||+++.++++|.++++.++
T Consensus 264 fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~a 343 (640)
T KOG0102|consen 264 FKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKA 343 (640)
T ss_pred hhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCccceee
Q 047849 344 LKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIET 423 (651)
Q Consensus 344 l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~~ 423 (651)
|++|++...+|+.|+||||++|+|++++.+++.||+.+...+||+++||.|||++++.++++++++.+.|++|+++||++
T Consensus 344 L~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVkdvlLLdVtpLsLgiet 423 (640)
T KOG0102|consen 344 LRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVKDVLLLDVTPLSLGIET 423 (640)
T ss_pred HHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhccccceeeeecchHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCee
Q 047849 424 LGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGI 503 (651)
Q Consensus 424 ~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~ 503 (651)
.+|.|..|||+|+.||++++..|.++.|+|+.+.|.++|||++++.+|..+|+|.+.|+||.|+|.|+|+|+|.+|+||+
T Consensus 424 lggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdanGI 503 (640)
T KOG0102|consen 424 LGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGI 503 (640)
T ss_pred hhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeecCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHH
Q 047849 504 VTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAK 583 (651)
Q Consensus 504 l~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~ 583 (651)
++|+|.|+.|+|..++++..+++||+++++.|+++++.+...|+.+++..+.+|..++++++.+..+.++.+.++.++..
T Consensus 504 ~~vsA~dk~t~K~qsi~i~~sggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~~~~~~~~~~~~ 583 (640)
T KOG0102|consen 504 GTVSAKDKGTGKSQSITIASSGGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKEFEEKIPAEECE 583 (640)
T ss_pred eeeehhhcccCCccceEEeecCCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhhhhhhCcHHHHH
Confidence 99999999999999999999989999999999999999999999999999999999999999999999899999999888
Q ss_pred HHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 047849 584 EIEDAVADLRKAMGA---DNVDDIKSKLDAANKAVSKIGQHMAGGSG 627 (651)
Q Consensus 584 ~~~~~l~~~~~wl~~---~~~~~~~~k~~~l~~~~~~i~~~~~~~~~ 627 (651)
+|...+.++.+.+.. .+.++++.+...|++...++++.+|..++
T Consensus 584 ~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~~~ 630 (640)
T KOG0102|consen 584 KLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYKNMG 630 (640)
T ss_pred HHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHHHHHHhhhc
Confidence 999999999888753 45899999999999999999999998655
|
|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-102 Score=881.53 Aligned_cols=569 Identities=60% Similarity=0.938 Sum_probs=535.0
Q ss_pred cEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHH
Q 047849 58 DIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQT 137 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~ 137 (651)
.+||||||||||+||++.+|.+.++.|..|+|.+||+|+|.++++++||..|+.+...+|.++++++||+||+.++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~- 81 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE- 81 (653)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh-
Confidence 5899999999999999999999999999999999999999777799999999999999999999999999999998764
Q ss_pred HHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcC
Q 047849 138 QKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAG 217 (651)
Q Consensus 138 ~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AG 217 (651)
...+.+||.++...++.+.+..+++.++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||++||
T Consensus 82 -~~~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AG 160 (653)
T PRK13411 82 -EERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAG 160 (653)
T ss_pred -HHhhcCCceEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHHcC
Confidence 4567899999988888877888889999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeecchHHHhhhhccccCC--CeEEEEEeCCcceEEEEEEEeccccc-----------------------------
Q 047849 218 LDVQRIINEPTAASLSYGMNNKE--GLIAVFDLGGGTFDVSILEISNGVFE----------------------------- 266 (651)
Q Consensus 218 l~~~~li~Ep~AAAl~y~~~~~~--~~vlVvD~GggT~Dvsv~~~~~~~~~----------------------------- 266 (651)
|++++|++||+|||++|+..+.. .++|||||||||||+|++++.++.|+
T Consensus 161 l~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~~ 240 (653)
T PRK13411 161 LEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQ 240 (653)
T ss_pred CCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987543 38999999999999999998876664
Q ss_pred ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047849 267 DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKD 346 (651)
Q Consensus 267 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~ 346 (651)
.++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+..++.++.+.|||++|+++++|+++++..+|+++|++
T Consensus 241 ~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~ 320 (653)
T PRK13411 241 QEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKD 320 (653)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888999999999999999999999999998876554455788999999999999999999999999999999
Q ss_pred cCCCCCCCCeEEEecCccCcHhHHHHHHHHhc-CCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCccceeecC
Q 047849 347 ANITTKDVDEVLLVGGMTRVPKVQEVVSEIFG-KSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLG 425 (651)
Q Consensus 347 a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~~~~ 425 (651)
+++.+.+|+.|+||||+||||+|++.|++.|+ ..+..++||++|||+|||++|+++++..+++.+.|++|++||+++.+
T Consensus 321 a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~slgi~~~~ 400 (653)
T PRK13411 321 AGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIETLG 400 (653)
T ss_pred cCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCCccceeeeecccceeeEEecC
Confidence 99999999999999999999999999999996 67888999999999999999999998889999999999999999999
Q ss_pred CeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEE
Q 047849 426 GIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVT 505 (651)
Q Consensus 426 ~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~ 505 (651)
+.|.+|||||+++|++++++|++..|+|+.+.|+||||++..+.+|..||+|.|.++|++++|.++|+|+|++|.||+|+
T Consensus 401 ~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~ 480 (653)
T PRK13411 401 EVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILK 480 (653)
T ss_pred CceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHH
Q 047849 506 VSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEI 585 (651)
Q Consensus 506 v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~ 585 (651)
|++.+..++++..+.+....+||++++++++++++++.++|+.++++.+++|++|+|+|.+++.|+++.+.+++++|+++
T Consensus 481 v~a~d~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~~~~~~~~~er~~i 560 (653)
T PRK13411 481 VSAQDQGTGREQSIRITNTGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEELKQRA 560 (653)
T ss_pred EEEeeccCCceEeeEEeccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 99999999999999988777899999999999999999999999999999999999999999999877889999999999
Q ss_pred HHHHHHHHHHhccCC--HHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 047849 586 EDAVADLRKAMGADN--VDDIKSKLDAANKAVSKIGQHMAGGSGG 628 (651)
Q Consensus 586 ~~~l~~~~~wl~~~~--~~~~~~k~~~l~~~~~~i~~~~~~~~~~ 628 (651)
.+.++++++||++++ .+++++++++|++.+.+++.++|+++|+
T Consensus 561 ~~~l~~~~~wL~~~~~~~~~~~~~~~el~~~~~~i~~~~y~~~~~ 605 (653)
T PRK13411 561 EQKVEQLEAALTDPNISLEELKQQLEEFQQALLAIGAEVYQQGGS 605 (653)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999864 8999999999999999999999987663
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-101 Score=874.83 Aligned_cols=565 Identities=53% Similarity=0.873 Sum_probs=529.6
Q ss_pred cEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHH
Q 047849 58 DIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQT 137 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~ 137 (651)
.+||||||||||+||++.+|.+.+|.|..|+++|||+|+|.+++++++|..|+.+...+|.++++.+||+||+++++ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~--~ 80 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE--L 80 (668)
T ss_pred cEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--h
Confidence 58999999999999999999999999999999999999997778999999999999999999999999999999865 5
Q ss_pred HHHhhcceeEEEECCCCCeEEEe--CCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHH
Q 047849 138 QKEMQMVSYKIVRAPNGDAWVEA--NGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRI 215 (651)
Q Consensus 138 ~~~~~~~~~~~~~~~~g~~~v~~--~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~ 215 (651)
+...+.+||.+..+++|.+.+.. .++.|+|++|++++|++|++.|+.++|.++.++|||||+||++.||++|++||++
T Consensus 81 ~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~ 160 (668)
T PRK13410 81 DPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRI 160 (668)
T ss_pred HHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHH
Confidence 56678899999988888877663 5688999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----------------------------
Q 047849 216 AGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE---------------------------- 266 (651)
Q Consensus 216 AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~---------------------------- 266 (651)
|||+++++|+||+|||++|+..+..+ ++||||+||||||+|++++.++.|+
T Consensus 161 AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~ 240 (668)
T PRK13410 161 AGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFL 240 (668)
T ss_pred cCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHHH
Confidence 99999999999999999999886554 9999999999999999998877654
Q ss_pred -ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 047849 267 -DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLK 345 (651)
Q Consensus 267 -~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~ 345 (651)
+++.++..+++++.+|+.+||++|+.||....+.+.++.+..+.++..++...|||++|+++|+++++++..+|+++|+
T Consensus 241 ~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~ 320 (668)
T PRK13410 241 EKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALK 320 (668)
T ss_pred hhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666788899999999999999999999999999888765555678899999999999999999999999999999
Q ss_pred HcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCccceeecC
Q 047849 346 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLG 425 (651)
Q Consensus 346 ~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~~~~ 425 (651)
++++++.+|+.|+||||+||||+|+++|+++||.++...+||++|||+|||++|+++++.++++.+.|++|++||+++.+
T Consensus 321 ~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~l~Dv~p~slgie~~~ 400 (668)
T PRK13410 321 DAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGELKDLLLLDVTPLSLGLETIG 400 (668)
T ss_pred HcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhcccccceeEEeeccccccceecC
Confidence 99999999999999999999999999999999988889999999999999999999999889999999999999999999
Q ss_pred CeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEE
Q 047849 426 GIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVT 505 (651)
Q Consensus 426 ~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~ 505 (651)
|.+.+|||+|++||++++.+|++..|||+.+.|+||||++..+.+|..||+|.|.++|++++|.++|+|+|++|.||+|+
T Consensus 401 g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nGiL~ 480 (668)
T PRK13410 401 GVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQ 480 (668)
T ss_pred CeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhh----cccCCCHHH
Q 047849 506 VSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGE----YREKIPSEV 581 (651)
Q Consensus 506 v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~----~~~~~~~~~ 581 (651)
|++.++.||++..++|....+||+++++++++++.++.++|+..+++.+++|++|+|+|.+++.|.+ +..++++++
T Consensus 481 V~a~d~~tg~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~ 560 (668)
T PRK13410 481 VSATDRTTGREQSVTIQGASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQ 560 (668)
T ss_pred EEEEEcCCCceeeeeecccccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHH
Confidence 9999999999999999877889999999999999999999999999999999999999999999963 568899999
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 047849 582 AKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAG 624 (651)
Q Consensus 582 ~~~~~~~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~ 624 (651)
|+++...++++++||+.++.+++++++++|.+.+.++..+++.
T Consensus 561 ~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 603 (668)
T PRK13410 561 RRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRA 603 (668)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999889999998888888888866643
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-99 Score=852.93 Aligned_cols=563 Identities=66% Similarity=1.021 Sum_probs=530.5
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHHH
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQ 138 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~~ 138 (651)
+||||||||||+||++++|.+.++.|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||+||+.++ .++
T Consensus 2 viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~~ 79 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EVT 79 (595)
T ss_pred EEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HHH
Confidence 799999999999999999999999999999999999999877799999999999999999999999999999984 477
Q ss_pred HHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCC
Q 047849 139 KEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGL 218 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AGl 218 (651)
...+.+||. +..++|...+..+++.++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||++|||
T Consensus 80 ~~~~~~~~~-v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl 158 (595)
T TIGR02350 80 EEAKRVPYK-VVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGL 158 (595)
T ss_pred HHhhcCCee-EEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 778899999 5567788888888999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeecchHHHhhhhcccc-CC-CeEEEEEeCCcceEEEEEEEeccccc-----------------------------c
Q 047849 219 DVQRIINEPTAASLSYGMNN-KE-GLIAVFDLGGGTFDVSILEISNGVFE-----------------------------D 267 (651)
Q Consensus 219 ~~~~li~Ep~AAAl~y~~~~-~~-~~vlVvD~GggT~Dvsv~~~~~~~~~-----------------------------~ 267 (651)
+++++|+||+|||++|+..+ .. .++|||||||||||+|++++.++.++ +
T Consensus 159 ~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~~ 238 (595)
T TIGR02350 159 EVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKE 238 (595)
T ss_pred ceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHHh
Confidence 99999999999999999875 33 39999999999999999998776553 3
Q ss_pred cCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047849 268 EGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDA 347 (651)
Q Consensus 268 ~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a 347 (651)
++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+..|+.++.+.|||++|+++++|+++++.++++++|+++
T Consensus 239 ~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~a 318 (595)
T TIGR02350 239 EGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDA 318 (595)
T ss_pred hCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566778889999999999999999999999999888766555557889999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCccceeecCCe
Q 047849 348 NITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGI 427 (651)
Q Consensus 348 ~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~~~~~~ 427 (651)
++++.+|+.|+||||+||+|+|++.|++.||.++..++||++|||+|||++|+.+++.++++.+.|++|++||+++.+|.
T Consensus 319 ~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~~~~~~~~d~~~~~igi~~~~~~ 398 (595)
T TIGR02350 319 GLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGGV 398 (595)
T ss_pred CCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCCcccceeeecccceeEEEecCCc
Confidence 99999999999999999999999999999998888999999999999999999999988999999999999999999999
Q ss_pred EEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEEEE
Q 047849 428 FTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVS 507 (651)
Q Consensus 428 ~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~v~ 507 (651)
+.+|||+|+++|++++++|++..|+|+.+.|++|||++..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|+
T Consensus 399 ~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l~v~ 478 (595)
T TIGR02350 399 MTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHVS 478 (595)
T ss_pred eEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHH
Q 047849 508 AKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIED 587 (651)
Q Consensus 508 ~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~ 587 (651)
+.+..++++..+++....+||+++++++++++.++.++|+..+++.+++|+||+|||.+++.|+++.+.+++++++++.+
T Consensus 479 ~~~~~~~~~~~~~i~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~~~~~~~~~e~~~l~~ 558 (595)
T TIGR02350 479 AKDKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEK 558 (595)
T ss_pred EEEccCCceEEEEeccccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 99999999999999887889999999999999999999999999999999999999999999976778899999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 047849 588 AVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAG 624 (651)
Q Consensus 588 ~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~ 624 (651)
.++++++||+.++.+++++++++|++.+.+++.++|+
T Consensus 559 ~l~~~~~wL~~~d~~~i~~~~~~l~~~~~~~~~~~~~ 595 (595)
T TIGR02350 559 AVAELKEALKGEDVEEIKAKTEELQQALQKLAEAMYQ 595 (595)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999988764
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-98 Score=850.79 Aligned_cols=565 Identities=62% Similarity=0.956 Sum_probs=531.2
Q ss_pred cEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHH
Q 047849 58 DIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQT 137 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~ 137 (651)
.+||||||||||+||++.+|.+.+++|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||+||+.+++ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~--~ 80 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE--I 80 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--H
Confidence 58999999999999999999999999999999999999997777899999999999999999999999999999864 5
Q ss_pred HHHhhcceeEEEECCCCCeEEE--eCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHH
Q 047849 138 QKEMQMVSYKIVRAPNGDAWVE--ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRI 215 (651)
Q Consensus 138 ~~~~~~~~~~~~~~~~g~~~v~--~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~ 215 (651)
+...+.+||.+...++|.+.+. ..+..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||++
T Consensus 81 ~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~ 160 (621)
T CHL00094 81 SEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKI 160 (621)
T ss_pred HhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 5666789999998887877665 45788999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----------------------------
Q 047849 216 AGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE---------------------------- 266 (651)
Q Consensus 216 AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~---------------------------- 266 (651)
|||+++++|+||+|||++|+.....+ ++|||||||||||+|++++.++.|+
T Consensus 161 AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~ 240 (621)
T CHL00094 161 AGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFK 240 (621)
T ss_pred cCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876554 9999999999999999998876654
Q ss_pred -ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 047849 267 -DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLK 345 (651)
Q Consensus 267 -~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~ 345 (651)
+++.++..+++++.+|+.+||++|+.||...++.+.++.+..+..|+.++...|||++|+++++++++++..+|+++|+
T Consensus 241 ~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~ 320 (621)
T CHL00094 241 KKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALK 320 (621)
T ss_pred HHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788899999999999999999999999988877654445567899999999999999999999999999999
Q ss_pred HcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCccceeecC
Q 047849 346 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLG 425 (651)
Q Consensus 346 ~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~~~~ 425 (651)
++++.+.+|+.|+||||+||||.|++.|++.||.++...+||++|||+|||++|+.+++..+++.+.|++|++||+++.+
T Consensus 321 ~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~~~~~~d~~~~~lgi~~~~ 400 (621)
T CHL00094 321 DAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLG 400 (621)
T ss_pred HcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCccceeeeeeeceeeeeeccC
Confidence 99999999999999999999999999999999988889999999999999999999999888999999999999999999
Q ss_pred CeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEE
Q 047849 426 GIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVT 505 (651)
Q Consensus 426 ~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~ 505 (651)
|.+.+|||+|+++|++++++|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+
T Consensus 401 ~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~Gil~ 480 (621)
T CHL00094 401 GVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILS 480 (621)
T ss_pred CEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHH
Q 047849 506 VSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEI 585 (651)
Q Consensus 506 v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~ 585 (651)
|++.++.|+++..+.+....+|++++++++++++.++.++|+..+++.+++|++|+|+|.+++.|+++.+.+++++|+++
T Consensus 481 v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~~~~~~~~~~~~~~ 560 (621)
T CHL00094 481 VTAKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKKEKI 560 (621)
T ss_pred EEEeeccCCceeeeeeccchhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 99999999999999988777899999999999999999999999999999999999999999999877788999999999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 047849 586 EDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAG 624 (651)
Q Consensus 586 ~~~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~ 624 (651)
.+.++++++||+.++.+++++++++|++.+.+++.++|+
T Consensus 561 ~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 561 ENLIKKLRQALQNDNYESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987
|
|
| >KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-100 Score=819.10 Aligned_cols=566 Identities=49% Similarity=0.788 Sum_probs=537.4
Q ss_pred CCCcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCC
Q 047849 55 AGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDD 134 (651)
Q Consensus 55 ~~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~ 134 (651)
..+.+|||||||||||++++.++.++++.|..|+|.+||+|+|.+ .++++|..|+.+...||.++++.+||++|+.+++
T Consensus 5 ~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~-~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d 83 (620)
T KOG0101|consen 5 PESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTD-TERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDD 83 (620)
T ss_pred cccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecc-cccchhhhhhhhhhcCCcceeeehhhhcCccccc
Confidence 345689999999999999999999999999999999999999964 5899999999999999999999999999999999
Q ss_pred hHHHHHhhcceeEEEECCCCCeEEE----eCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHH
Q 047849 135 PQTQKEMQMVSYKIVRAPNGDAWVE----ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATK 210 (651)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~g~~~v~----~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~ 210 (651)
+.++.+.+.|||.+.....+.+.+. ...+.|+|+++++++|.++++.|+.++|..+.++|+|||+||++.||+++.
T Consensus 84 ~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~ 163 (620)
T KOG0101|consen 84 PEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATK 163 (620)
T ss_pred hhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHH
Confidence 9999999999999986666666655 334789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEeecchHHHhhhhccccCC--C-eEEEEEeCCcceEEEEEEEeccccc---------------------
Q 047849 211 DAGRIAGLDVQRIINEPTAASLSYGMNNKE--G-LIAVFDLGGGTFDVSILEISNGVFE--------------------- 266 (651)
Q Consensus 211 ~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~--~-~vlVvD~GggT~Dvsv~~~~~~~~~--------------------- 266 (651)
+|+.+|||+++++|+||+|||++|+++++. . +|||+|+||||||+|++.+.+|.|.
T Consensus 164 ~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~ 243 (620)
T KOG0101|consen 164 DAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVN 243 (620)
T ss_pred HHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHH
Confidence 999999999999999999999999988752 2 9999999999999999999987544
Q ss_pred --------ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHH
Q 047849 267 --------DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRA 338 (651)
Q Consensus 267 --------~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~ 338 (651)
+++.++..+++++.+|+.+||.+|+.||+...+.+.+++++++ .++...|||.+|+.++.+++.++..
T Consensus 244 h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g----~d~~~~itrarfe~l~~dlf~~~~~ 319 (620)
T KOG0101|consen 244 HFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARFEELNADLFRSTLE 319 (620)
T ss_pred HHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhcc----ccccceeehhhhhhhhhHHHHHHHH
Confidence 6678889999999999999999999999999999999999887 7899999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHh-cCCCCCcCCccchheehhHHHhhhccC----CcceeEEEe
Q 047849 339 PCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIF-GKSPSKGVNPDEAVALGAAIQGGILRG----DVKELLLLD 413 (651)
Q Consensus 339 ~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f-~~~~~~~~~p~~aVA~GAa~~a~~l~~----~~~~~~~~d 413 (651)
++.++|+++++++.+|+.|+||||++++|.+|..++++| ++.+..++|||++||+|||++|+.+++ ...++.++|
T Consensus 320 ~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid 399 (620)
T KOG0101|consen 320 PVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLID 399 (620)
T ss_pred HHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeee
Confidence 999999999999999999999999999999999999999 577889999999999999999999987 357899999
Q ss_pred cccCccceeecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeE
Q 047849 414 VTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIE 493 (651)
Q Consensus 414 ~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~ 493 (651)
+.|+++||++.+|.|.++|++||.+|++++++|+++.|||+.+.|.|||||+.+.++|..+|.|+|.|+||+|+|+++|+
T Consensus 400 ~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~Ie 479 (620)
T KOG0101|consen 400 VAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIE 479 (620)
T ss_pred cccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCeeEEEEEEecCCCceeeEEecCC-CCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047849 494 VTFDIDANGIVTVSAKDKATGKEQQITIRSS-GGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGE 572 (651)
Q Consensus 494 v~f~~d~~G~l~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~ 572 (651)
++|.+|.+|+|+|++.|+.|||...++|.+. +.||.++|++|..+++.+..+|...+.+.+++|.||+|+|+++..+++
T Consensus 480 vtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~ 559 (620)
T KOG0101|consen 480 VTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVED 559 (620)
T ss_pred EEEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhh
Confidence 9999999999999999999999999999885 789999999999999999999999999999999999999999999987
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHHHHhcC
Q 047849 573 YREKIPSEVAKEIEDAVADLRKAMGADN---VDDIKSKLDAANKAVSKIGQHMAGG 625 (651)
Q Consensus 573 ~~~~~~~~~~~~~~~~l~~~~~wl~~~~---~~~~~~k~~~l~~~~~~i~~~~~~~ 625 (651)
..+.++++++.++.+.++++.+||+.++ .+++++|.++|+..|.|+++++|++
T Consensus 560 ~~~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 560 EKGKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred hccccChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 6689999999999999999999999875 8999999999999999999999996
|
|
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-98 Score=839.18 Aligned_cols=558 Identities=42% Similarity=0.690 Sum_probs=522.0
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHHH
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQ 138 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~~ 138 (651)
+||||||||||+||++.+|.++++.|..|++.+||+|+|.++++++||..|+.+...+|.++++.+||+||+.+.+..
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~-- 78 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIK-- 78 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchh--
Confidence 589999999999999999999999999999999999999877799999999999999999999999999999987643
Q ss_pred HHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCC
Q 047849 139 KEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGL 218 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AGl 218 (651)
. .+.+||.+...++|.+.+...+..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||++|||
T Consensus 79 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl 157 (599)
T TIGR01991 79 T-FSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGL 157 (599)
T ss_pred h-cccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 2 577899998888888888766678999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc-------------------------ccCCCC
Q 047849 219 DVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE-------------------------DEGIDL 272 (651)
Q Consensus 219 ~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~-------------------------~~~~~~ 272 (651)
+++++++||+|||++|+.....+ ++||||+||||||+|++++.++.|+ +++.+.
T Consensus 158 ~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~~~~ 237 (599)
T TIGR01991 158 NVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLGISA 237 (599)
T ss_pred CceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999876544 9999999999999999998876654 334555
Q ss_pred ccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 047849 273 SKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTK 352 (651)
Q Consensus 273 ~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~ 352 (651)
..++..+.+|+.+||++|+.||....+.+.++. ++ .++.++|||++|+++++|+++++.++|+++|+++++.+.
T Consensus 238 ~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g----~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~ 311 (599)
T TIGR01991 238 DLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DG----KDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVE 311 (599)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CC----cEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 567888999999999999999999988888764 22 678999999999999999999999999999999999999
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCC--cceeEEEecccCccceeecCCeEEE
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGD--VKELLLLDVTPLSLGIETLGGIFTR 430 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~--~~~~~~~d~~~~sigi~~~~~~~~~ 430 (651)
+|+.|+||||+||||+|+++|++.|+..+..++||++|||.|||++|+.+++. .+++.+.|++|++||+++.+|.+.+
T Consensus 312 ~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~slgi~~~~g~~~~ 391 (599)
T TIGR01991 312 EIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMGGLVEK 391 (599)
T ss_pred hCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeeeeEEEecCCEEEE
Confidence 99999999999999999999999999888889999999999999999999874 3589999999999999999999999
Q ss_pred EEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEEEEEEe
Q 047849 431 LINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKD 510 (651)
Q Consensus 431 ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~v~~~~ 510 (651)
|||||+++|+++++.|++..|+|+.+.|+||||++..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|++.+
T Consensus 392 ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V~a~~ 471 (599)
T TIGR01991 392 IIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQE 471 (599)
T ss_pred EEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Q 047849 511 KATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIEDAVA 590 (651)
Q Consensus 511 ~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~ 590 (651)
+.||++..+.|.....|++++++++++++.++..+|+..++..+++|++|+++|.+++.+.++...+++++|+++...++
T Consensus 472 ~~t~~~~~~~i~~~~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 551 (599)
T TIGR01991 472 QSTGVEQSIQVKPSYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAADGDLLSEDERAAIDAAME 551 (599)
T ss_pred CCCCcEEEEecccccCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 99999999999887789999999999999999999999999999999999999999999976667899999999999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047849 591 DLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAGG 625 (651)
Q Consensus 591 ~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~~ 625 (651)
++++||++++.++++++.++|++.+.+++.+.++.
T Consensus 552 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 586 (599)
T TIGR01991 552 ALQKALQGDDADAIKAAIEALEEATDNFAARRMDR 586 (599)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999877764
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-96 Score=830.59 Aligned_cols=558 Identities=41% Similarity=0.683 Sum_probs=517.8
Q ss_pred CCcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCCh
Q 047849 56 GNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDP 135 (651)
Q Consensus 56 ~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~ 135 (651)
...+||||||||||+||++.+|.+++++|..|++.+||+|+|.++ .++||..|+.+...+|.++++.+||+||+.+++
T Consensus 18 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d- 95 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLED-GIEVGYEARANAAQDPKNTISSVKRFMGRSLAD- 95 (616)
T ss_pred CCeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCC-CEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh-
Confidence 346899999999999999999999999999999999999999755 599999999999999999999999999999875
Q ss_pred HHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHH
Q 047849 136 QTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRI 215 (651)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~ 215 (651)
++.....+||.+....+|.+.+...+..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||++
T Consensus 96 -~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~ 174 (616)
T PRK05183 96 -IQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARL 174 (616)
T ss_pred -hhhhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHH
Confidence 4455678899998877888888766678999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc-------------------------ccC
Q 047849 216 AGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE-------------------------DEG 269 (651)
Q Consensus 216 AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~-------------------------~~~ 269 (651)
|||+++++|+||+|||++|+.+...+ ++||||+||||||+|++++.++.|+ +.+
T Consensus 175 AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~~ 254 (616)
T PRK05183 175 AGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAG 254 (616)
T ss_pred cCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999876544 9999999999999999998877654 334
Q ss_pred CCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 047849 270 IDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANI 349 (651)
Q Consensus 270 ~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~ 349 (651)
.+...++..+.+|+.+||++|+.||....+.+.+..+ ...|||++|+++++|+++++..+++++|+++++
T Consensus 255 ~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~----------~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~~ 324 (616)
T PRK05183 255 LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW----------QGEITREQFNALIAPLVKRTLLACRRALRDAGV 324 (616)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC----------CCeEcHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4455678889999999999999999998888877421 224999999999999999999999999999999
Q ss_pred CCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCC--cceeEEEecccCccceeecCCe
Q 047849 350 TTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGD--VKELLLLDVTPLSLGIETLGGI 427 (651)
Q Consensus 350 ~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~--~~~~~~~d~~~~sigi~~~~~~ 427 (651)
.+.+|+.|+||||+||||+|++.|+++||..+..++||++|||+|||++|+.+++. .+++.+.|++|++||+++.+|.
T Consensus 325 ~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~~~l~dv~p~slgi~~~~g~ 404 (616)
T PRK05183 325 EADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGLETMGGL 404 (616)
T ss_pred CcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccccCceEEEeeccccccceecCCe
Confidence 99999999999999999999999999999888889999999999999999999875 4689999999999999999999
Q ss_pred EEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEEEE
Q 047849 428 FTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVS 507 (651)
Q Consensus 428 ~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~v~ 507 (651)
+.+|||+|+++|+++++.|++..|+|+.+.|+|||||+..+.+|..||+|.|.++|+.|+|.++|+|+|++|.||+|+|+
T Consensus 405 ~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gil~V~ 484 (616)
T PRK05183 405 VEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVT 484 (616)
T ss_pred EEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHH
Q 047849 508 AKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIED 587 (651)
Q Consensus 508 ~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~ 587 (651)
+.++.+|++..+.|.+..+||++++++++++++++..+|+..+++.+++|++|.++|.+++.+.+..+.+++++|+++.+
T Consensus 485 a~~~~~~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 564 (616)
T PRK05183 485 AMEKSTGVEASIQVKPSYGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAADGDLLSAAERAAIDA 564 (616)
T ss_pred EEEcCCCcEEEecccccccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 99999999999999877789999999999999999999999999999999999999999999976667899999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 047849 588 AVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAGGS 626 (651)
Q Consensus 588 ~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~~~ 626 (651)
.++++++||++++.+++++++++|++.+.++..+.++.+
T Consensus 565 ~l~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~ 603 (616)
T PRK05183 565 AMAALREVAQGDDADAIEAAIKALDKATQEFAARRMDRS 603 (616)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999998877643
|
|
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-92 Score=790.24 Aligned_cols=533 Identities=35% Similarity=0.545 Sum_probs=472.8
Q ss_pred CcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCCh-
Q 047849 57 NDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDP- 135 (651)
Q Consensus 57 ~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~- 135 (651)
..+||||||||||+||++.+|.+++++|..|++.+||+|+|.+ +.++||..| +++++||++|+.+++.
T Consensus 19 ~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~-~~~~vG~~A----------ti~~~KrliG~~~~~~~ 87 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTS-NNFTIGNNK----------GLRSIKRLFGKTLKEIL 87 (595)
T ss_pred ceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcC-CCEEECchh----------hHHHHHHHhCCCchhhc
Confidence 3589999999999999999999999999999999999999964 469999987 7999999999998752
Q ss_pred ---HHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHH
Q 047849 136 ---QTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDA 212 (651)
Q Consensus 136 ---~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~A 212 (651)
.+....+. ......+...+..+++.++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++|
T Consensus 88 ~~~~~~~~~k~----~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~A 163 (595)
T PRK01433 88 NTPALFSLVKD----YLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLA 163 (595)
T ss_pred cchhhHhhhhh----eeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 22221111 12223334456677889999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc---------ccCCCC----------
Q 047849 213 GRIAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE---------DEGIDL---------- 272 (651)
Q Consensus 213 a~~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~---------~~~~~~---------- 272 (651)
|++|||+++++++||+|||++|+.+.... ++||||+||||||+|++++.++.|+ ..|.|+
T Consensus 164 a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~ 243 (595)
T PRK01433 164 AKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCN 243 (595)
T ss_pred HHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHH
Confidence 99999999999999999999999876544 8999999999999999999887766 111221
Q ss_pred ----ccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 047849 273 ----SKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDAN 348 (651)
Q Consensus 273 ----~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~ 348 (651)
..+. +.+..||++|+.||......+ ..++|||++|+++++|+++++..+++++|++++
T Consensus 244 ~~~~~~~~----~~~~~~ekaK~~LS~~~~~~~--------------~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~ 305 (595)
T PRK01433 244 KFDLPNSI----DTLQLAKKAKETLTYKDSFNN--------------DNISINKQTLEQLILPLVERTINIAQECLEQAG 305 (595)
T ss_pred hcCCCCCH----HHHHHHHHHHHhcCCCccccc--------------ceEEEcHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 1111 234469999999998764211 268999999999999999999999999999998
Q ss_pred CCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCccceeecCCeE
Q 047849 349 ITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIF 428 (651)
Q Consensus 349 ~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~~~~~~~ 428 (651)
+.+|+.|+||||+||||+|+++|++.||.++..+.||++|||+|||++|+.+++...++.+.|++|++||+++.+|.+
T Consensus 306 --~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~slgi~~~~g~~ 383 (595)
T PRK01433 306 --NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHTNSLLIDVVPLSLGMELYGGIV 383 (595)
T ss_pred --cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCccceEEEEecccceEEEecCCEE
Confidence 578999999999999999999999999988888999999999999999999988778899999999999999999999
Q ss_pred EEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEEEEE
Q 047849 429 TRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSA 508 (651)
Q Consensus 429 ~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~v~~ 508 (651)
.+|||||++||+++++.|++..|+|+.+.|+|||||+..+.+|..||+|.|.++|+.|+|.++|+|+|++|.||+|+|++
T Consensus 384 ~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~id~~Gil~V~a 463 (595)
T PRK01433 384 EKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVSA 463 (595)
T ss_pred EEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEECCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHH
Q 047849 509 KDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIEDA 588 (651)
Q Consensus 509 ~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~ 588 (651)
.++.||++..+.|..+..||++|+++++++++++.++|..+++..+++|++|++++.+++.++++.+.+++++|+++...
T Consensus 464 ~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 543 (595)
T PRK01433 464 YEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAELTTLLSESEISIINSL 543 (595)
T ss_pred EEcCCCcEEEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 99999999999998777899999999999999999999999999999999999999999999877778999999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHH--------HHHHHhc
Q 047849 589 VADLRKAMGADNVDDIKSKLDAANKAVSK--------IGQHMAG 624 (651)
Q Consensus 589 l~~~~~wl~~~~~~~~~~k~~~l~~~~~~--------i~~~~~~ 624 (651)
++++++||+.++...+++++++|++.+.+ ++.++|+
T Consensus 544 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 587 (595)
T PRK01433 544 LDNIKEAVHARDIILINNSIKEFKSKIKKSMDTKLNIIINDLLK 587 (595)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 99999999988877777666666655555 5555555
|
|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-90 Score=767.95 Aligned_cols=543 Identities=62% Similarity=0.921 Sum_probs=513.1
Q ss_pred CcEEEEEcCCceEEEEEEeCC-ceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCCh
Q 047849 57 NDIIGIDLGTTNSCVALMEGK-NPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDP 135 (651)
Q Consensus 57 ~~vvGID~GTt~s~va~~~~~-~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~ 135 (651)
..+|||||||||||||+++++ .+.++.|..|.|.+||+|+|.+++++++|..|+.+...+|.++++.+||++|+...
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~-- 82 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN-- 82 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC--
Confidence 458999999999999999988 79999999999999999999877789999999999999999999999999998721
Q ss_pred HHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHH
Q 047849 136 QTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRI 215 (651)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~ 215 (651)
.....+..+++.++|+++++++|++|++.|+.+++..++++||||||||++.||+++++|+++
T Consensus 83 -----------------~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~i 145 (579)
T COG0443 83 -----------------GLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARI 145 (579)
T ss_pred -----------------CCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 011235566789999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----------------------------
Q 047849 216 AGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE---------------------------- 266 (651)
Q Consensus 216 AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~---------------------------- 266 (651)
|||+++++++||+|||++|+.+...+ +|||||+||||||+|++++.++.|+
T Consensus 146 aGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~ 225 (579)
T COG0443 146 AGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFK 225 (579)
T ss_pred cCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhh
Confidence 99999999999999999999998765 9999999999999999999877665
Q ss_pred -ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 047849 267 -DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLK 345 (651)
Q Consensus 267 -~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~ 345 (651)
++++++..++..+.+|+.+||++|+.||+..++.+.++++..+ .++..+|||++||+++.+++.++..++.++|.
T Consensus 226 ~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~----~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~ 301 (579)
T COG0443 226 GKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD----IDLLKELTRAKFEELILDLLERTIEPVEQALK 301 (579)
T ss_pred ccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhcccc----chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888999999999999999999999999999999877655 67889999999999999999999999999999
Q ss_pred HcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCccceeecC
Q 047849 346 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLG 425 (651)
Q Consensus 346 ~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~~~~ 425 (651)
++++++.+|+.|+||||++|||.|++.++++|++++...+||+++||.|||++|+.+++...++.+.|++|+++|+++.+
T Consensus 302 ~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~d~ll~Dv~plslgie~~~ 381 (579)
T COG0443 302 DAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIETLG 381 (579)
T ss_pred HcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCcccCceEEeeeeeccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999877999999999999999999
Q ss_pred CeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEE
Q 047849 426 GIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVT 505 (651)
Q Consensus 426 ~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~ 505 (651)
+.+..+|++|+.+|.++...|.+..|+|..+.+++++|++....+|..+|.|.+.++||.++|.++|+|+|.+|.||+++
T Consensus 382 ~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi~~ 461 (579)
T COG0443 382 GVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILN 461 (579)
T ss_pred chhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHH
Q 047849 506 VSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEI 585 (651)
Q Consensus 506 v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~ 585 (651)
|++.++.+|++..+.|..+.+|++++++.|.+.++.+.+.|++.++..+.+|.++.+++.++..|.+.. .+++++++++
T Consensus 462 v~a~~~~~~k~~~i~i~~~~~ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~ 540 (579)
T COG0443 462 VTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIV-KVSEEEKEKI 540 (579)
T ss_pred eeeecccCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-cCCHHHHHHH
Confidence 999999999999999998766999999999999999999999999999999999999999999998766 8999999999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 047849 586 EDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAG 624 (651)
Q Consensus 586 ~~~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~ 624 (651)
...+.++++||+++ .++++.+.++|+....++.++.|+
T Consensus 541 ~~~~~~~~~~l~~~-~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 541 EEAITDLEEALEGE-KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999985 889999999999999999988775
|
|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-88 Score=772.52 Aligned_cols=562 Identities=47% Similarity=0.773 Sum_probs=505.4
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHHH
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQ 138 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~~ 138 (651)
|||||||||||+||++.++.++++.|..|+|++||+|+|.+ +++++|..|...+.++|.++++++||+||+.++++.++
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~-~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSD-NERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEES-SCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEee-ecccCCcchhhhcccccccccccccccccccccccccc
Confidence 69999999999999999999999999999999999999965 48999999999999999999999999999999999999
Q ss_pred HHhhcceeEEEECCCCCeEEE--eCC--eeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHH
Q 047849 139 KEMQMVSYKIVRAPNGDAWVE--ANG--QQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGR 214 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~g~~~v~--~~~--~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~ 214 (651)
...+.+||.+..+++|...+. ..+ +.++|+++++++|++|++.++.+++..+.++|||||++|++.||+++++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 999999999999888887765 334 4899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEeecchHHHhhhhccccCC-C-eEEEEEeCCcceEEEEEEEeccccc--------------------------
Q 047849 215 IAGLDVQRIINEPTAASLSYGMNNKE-G-LIAVFDLGGGTFDVSILEISNGVFE-------------------------- 266 (651)
Q Consensus 215 ~AGl~~~~li~Ep~AAAl~y~~~~~~-~-~vlVvD~GggT~Dvsv~~~~~~~~~-------------------------- 266 (651)
.|||++++||+||+|||++|+..+.. + ++|||||||||+|+|++++.++.++
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEK 239 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeecccccc
Confidence 99999999999999999999887655 3 9999999999999999998877654
Q ss_pred ---ccCCCCccCHHHHHHHHHHHHHhhhhcCC--CceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHH
Q 047849 267 ---DEGIDLSKDRLALQRLREAAEKAKIELSS--TTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCK 341 (651)
Q Consensus 267 ---~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~--~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~ 341 (651)
.++.++..+++.+.+|+.+||++|+.||. ..+..+.++.+.++ | .++.+.|||++|+++++|+++++..+++
T Consensus 240 ~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~--~-~~~~~~itr~~fe~l~~~~~~~~~~~i~ 316 (602)
T PF00012_consen 240 FKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDD--G-EDFSITITREEFEELCEPLLERIIEPIE 316 (602)
T ss_dssp HHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETT--T-EEEEEEEEHHHHHHHTHHHHHHTHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc--c-cccccccccceecccccccccccccccc
Confidence 44667778899999999999999999999 56667777766652 1 7899999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC--CcceeEEEecccCcc
Q 047849 342 NCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG--DVKELLLLDVTPLSL 419 (651)
Q Consensus 342 ~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~--~~~~~~~~d~~~~si 419 (651)
++|++++++..+|+.|+||||+||+|+|++.|++.|+..+..++||++|||+|||++|+.+++ ..+++.+.|++|++|
T Consensus 317 ~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~~~~~~ 396 (602)
T PF00012_consen 317 KALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDVTPFSI 396 (602)
T ss_dssp HHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEBESSEE
T ss_pred cccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccccccccccccccccc
Confidence 999999999999999999999999999999999999987888999999999999999999887 567899999999999
Q ss_pred ceeecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEc
Q 047849 420 GIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDID 499 (651)
Q Consensus 420 gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d 499 (651)
||+..+|.+.+++++|+++|+..+..|.+..++|+.+.|.||+|+.....+|..||++.|.++++.+.|.++|+|+|++|
T Consensus 397 ~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld 476 (602)
T PF00012_consen 397 GIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELD 476 (602)
T ss_dssp EEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEeee
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred CCeeEEEEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCH
Q 047849 500 ANGIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPS 579 (651)
Q Consensus 500 ~~G~l~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~ 579 (651)
.+|+|+|++.+..+++...+.+.....+++++++++.++++++...|+.+++..+++|++|+++|++++.+++..+.+++
T Consensus 477 ~~Gil~V~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~~~~~~~ 556 (602)
T PF00012_consen 477 ENGILSVEAAEVETGKEEEVTVKKKETLSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEEDKDFVSE 556 (602)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEESSSSSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGSTH
T ss_pred eeeehhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhhhccCCH
Confidence 99999999999999999989888876699999999999999999999999999999999999999999999866778888
Q ss_pred HHH-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 047849 580 EVA-KEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAG 624 (651)
Q Consensus 580 ~~~-~~~~~~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~ 624 (651)
+++ +++++..+++.+|.+..+.+++++++++|++..+++..|+||
T Consensus 557 ~~~~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 557 EEKKKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 776 555555555555555556999999999999999999999875
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-78 Score=641.28 Aligned_cols=548 Identities=30% Similarity=0.525 Sum_probs=495.5
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHHH
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQ 138 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~~ 138 (651)
++|||||..+|.+|+.+.+++++|.|..++|.||++|+|. ...|++|.+|+.+..+|+.|++..+||++|+.|+||.+|
T Consensus 3 vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg-~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q 81 (727)
T KOG0103|consen 3 VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFG-PKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQ 81 (727)
T ss_pred ceeeeccccceeeeeeccCCceeeeeccccccCcceeeec-cccceeeeccccceeecccccchhhhhhhccccCChHhh
Confidence 8999999999999999999999999999999999999995 568999999999999999999999999999999999999
Q ss_pred HHhhcceeEEEECCCCCeEEE----eCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHH
Q 047849 139 KEMQMVSYKIVRAPNGDAWVE----ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGR 214 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~g~~~v~----~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~ 214 (651)
.+.+.+|+.++..++|.+.+. ...+.|+|++|++|+|.+|+..|++.+..++.+|||+||+||++.||+++.+||+
T Consensus 82 ~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~ 161 (727)
T KOG0103|consen 82 REIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAAR 161 (727)
T ss_pred hcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHh
Confidence 999999999999999988766 4557899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEeecchHHHhhhhccccCC--------CeEEEEEeCCcceEEEEEEEeccccc--------------------
Q 047849 215 IAGLDVQRIINEPTAASLSYGMNNKE--------GLIAVFDLGGGTFDVSILEISNGVFE-------------------- 266 (651)
Q Consensus 215 ~AGl~~~~li~Ep~AAAl~y~~~~~~--------~~vlVvD~GggT~Dvsv~~~~~~~~~-------------------- 266 (651)
+|||+++++++|.+|+|++|++.+.+ .+|+++|+|++++.+|++.+..|.+.
T Consensus 162 iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~ 241 (727)
T KOG0103|consen 162 IAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALI 241 (727)
T ss_pred hcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHH
Confidence 99999999999999999999998642 28999999999999999988766433
Q ss_pred ---------ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHH
Q 047849 267 ---------DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTR 337 (651)
Q Consensus 267 ---------~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~ 337 (651)
++++|...+++++.||+.+||+.|+.||++.....+|++++++ .|.+-.|+|++||+++.|+++|+.
T Consensus 242 ~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d----~dvs~~i~ReEfEel~~plL~rv~ 317 (727)
T KOG0103|consen 242 DHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMND----KDVSSKIKREEFEELSAPLLERVE 317 (727)
T ss_pred HHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeec----chhhhhccHHHHHHHHHHHHHhhh
Confidence 7788889999999999999999999999999999999999998 788999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC--CcceeEEEecc
Q 047849 338 APCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG--DVKELLLLDVT 415 (651)
Q Consensus 338 ~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~--~~~~~~~~d~~ 415 (651)
.++.++|++++++..+|+.|.+|||+||||.|+++|+++||++..+++|.++|||+|||+++|++|+ +++++.+.|+.
T Consensus 318 ~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di~ 397 (727)
T KOG0103|consen 318 VPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDIV 397 (727)
T ss_pred HHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccceecceeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 77899999999
Q ss_pred cCccceeec----C-CeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecC-ccccccCcceeEEEEeCCCCCCCC-
Q 047849 416 PLSLGIETL----G-GIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGE-REMASDNKSLGEFELVGIPPAPRG- 488 (651)
Q Consensus 416 ~~sigi~~~----~-~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge-~~~~~~n~~lg~~~l~~~~~~~~g- 488 (651)
||++.+.+. + +....+||+|.++|.++..+|.... .|.+.++++. ..++.....|+++.+.++.+...|
T Consensus 398 pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~----~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge 473 (727)
T KOG0103|consen 398 PYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKG----PFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGE 473 (727)
T ss_pred ceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecC----ceEEEEEeccccccCCCCCceeeEEecccccCcccc
Confidence 999998864 2 5557899999999999999998875 4777777765 455656678999999999888774
Q ss_pred CCeeEEEEEEcCCeeEEEEEEe----------------------------cCCC----ceeeEEecC--CCCCCHHHHHH
Q 047849 489 MPQIEVTFDIDANGIVTVSAKD----------------------------KATG----KEQQITIRS--SGGLSEDEIEK 534 (651)
Q Consensus 489 ~~~i~v~f~~d~~G~l~v~~~~----------------------------~~t~----~~~~~~i~~--~~~ls~~~i~~ 534 (651)
..+++|..+++.+|+++|...- ...+ +...+.+.. .++|+..+++.
T Consensus 474 ~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~~ 553 (727)
T KOG0103|consen 474 FSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDELEL 553 (727)
T ss_pred ccceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHHHHHH
Confidence 6789999999999999987320 0011 122333433 35799999999
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHh-hcccCCCHHHHHHHHHHHHHHHHHhccCC----HHHHHHHHH
Q 047849 535 MVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLG-EYREKIPSEVAKEIEDAVADLRKAMGADN----VDDIKSKLD 609 (651)
Q Consensus 535 ~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~-~~~~~~~~~~~~~~~~~l~~~~~wl~~~~----~~~~~~k~~ 609 (651)
.++++.+|..+|+...++.+++|.||+|+|++|++|. .|.+++++++++++...|+++++|||.++ ...|..|+.
T Consensus 554 ~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~ 633 (727)
T KOG0103|consen 554 YIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLE 633 (727)
T ss_pred HHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHH
Confidence 9999999999999999999999999999999999996 68899999999999999999999999875 566777777
Q ss_pred HHHHHH
Q 047849 610 AANKAV 615 (651)
Q Consensus 610 ~l~~~~ 615 (651)
+|+...
T Consensus 634 elk~~g 639 (727)
T KOG0103|consen 634 ELKKLG 639 (727)
T ss_pred HHHhhh
Confidence 777655
|
|
| >KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-70 Score=579.68 Aligned_cols=560 Identities=28% Similarity=0.445 Sum_probs=477.7
Q ss_pred ccCCCCCCcEEEEEcCCceEEEEEEeCCceE-EEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhh
Q 047849 50 FSSKPAGNDIIGIDLGTTNSCVALMEGKNPK-VIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLI 128 (651)
Q Consensus 50 ~~~~~~~~~vvGID~GTt~s~va~~~~~~~~-ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~l 128 (651)
|.+......|++||+||.+++||++++|.|. |+.|..++|++|++|+| ++|+|++|.+|.....++|.+++..++.++
T Consensus 15 ~~~~~~~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vaf-k~~eR~fg~~A~~ma~r~P~~~~~~l~~ll 93 (902)
T KOG0104|consen 15 FVALSSALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAF-KGGERIFGEAAASMATRFPQSTYRQLKDLL 93 (902)
T ss_pred HhcccchhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEe-cCCceehhhhhhhhhhcCcHHHHHHHHHHh
Confidence 3334455679999999999999999999875 89999999999999999 688999999999999999999999999999
Q ss_pred CCCCCChHHHHHhhccee-EEEECC-CCCeEEEeCC-eeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHH
Q 047849 129 GRKFDDPQTQKEMQMVSY-KIVRAP-NGDAWVEANG-QQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQ 205 (651)
Q Consensus 129 g~~~~~~~~~~~~~~~~~-~~~~~~-~g~~~v~~~~-~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~q 205 (651)
|+...++.++.+.+.+|| .++.++ .+.+.+..++ ..|++|++++|+|.+.+..|+.+...+|+++|||||.||++.|
T Consensus 94 gk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qae 173 (902)
T KOG0104|consen 94 GKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAE 173 (902)
T ss_pred CcccCCcHHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHH
Confidence 999999999998888775 566665 4455567666 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCceEEeecchHHHhhhhccccCC-----C-eEEEEEeCCcceEEEEEEEec------c----------
Q 047849 206 RQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKE-----G-LIAVFDLGGGTFDVSILEISN------G---------- 263 (651)
Q Consensus 206 r~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~-----~-~vlVvD~GggT~Dvsv~~~~~------~---------- 263 (651)
|+++.+||++||++++.||+|.+|||+.|+..+.. . +++|||||+|++.++++.+.- +
T Consensus 174 R~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~g 253 (902)
T KOG0104|consen 174 RRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLG 253 (902)
T ss_pred HHHHHHHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEe
Confidence 99999999999999999999999999999998632 2 999999999999999987531 1
Q ss_pred -ccc------------------------ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEE
Q 047849 264 -VFE------------------------DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNI 318 (651)
Q Consensus 264 -~~~------------------------~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~ 318 (651)
.|+ +.+.++..+++++.+|.++|+++|..||.+.++.++|+.+.++ .||..
T Consensus 254 vGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~dd----iDFr~ 329 (902)
T KOG0104|consen 254 VGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDD----IDFRL 329 (902)
T ss_pred eccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhc----ccccc
Confidence 011 3345778899999999999999999999999999999999988 89999
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhc-CCCCCcCCccchheehhHH
Q 047849 319 TLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFG-KSPSKGVNPDEAVALGAAI 397 (651)
Q Consensus 319 ~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~-~~~~~~~~p~~aVA~GAa~ 397 (651)
.|||++||++|.++..++..+|.++|..++++.++|+.|+|.||+||+|.||+.|.++.| .++...+|.|||++.||++
T Consensus 330 kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~ 409 (902)
T KOG0104|consen 330 KVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVY 409 (902)
T ss_pred ceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997 5688999999999999999
Q ss_pred HhhhccC--CcceeEEEecccCccceeecCC--------eEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccc
Q 047849 398 QGGILRG--DVKELLLLDVTPLSLGIETLGG--------IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREM 467 (651)
Q Consensus 398 ~a~~l~~--~~~~~~~~d~~~~sigi~~~~~--------~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~ 467 (651)
+|+.|+. +++++.+.|.++|+|-++..+. .-..+|++|.++|..+..+|+.+.|+ +.+.+-.|.-.
T Consensus 410 ~aA~LSksFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~~- 485 (902)
T KOG0104|consen 410 QAAHLSKSFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDLG- 485 (902)
T ss_pred HHHhhcccccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhhc-
Confidence 9999997 5789999999999988765432 22358999999999988888877763 44433333211
Q ss_pred cccCcceeEEEEeCCCCC----CC---CCCeeEEEEEEcCCeeEEEEEEec---------------------CC------
Q 047849 468 ASDNKSLGEFELVGIPPA----PR---GMPQIEVTFDIDANGIVTVSAKDK---------------------AT------ 513 (651)
Q Consensus 468 ~~~n~~lg~~~l~~~~~~----~~---g~~~i~v~f~~d~~G~l~v~~~~~---------------------~t------ 513 (651)
..+-+|++.++... +. ....|+++|.+|.+|++.|+..+. .+
T Consensus 486 ----~nl~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~ 561 (902)
T KOG0104|consen 486 ----QNLTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEET 561 (902)
T ss_pred ----cCccEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccc
Confidence 23346777776532 11 135699999999999999874320 00
Q ss_pred -----------------Cc--------------------------------------eeeEEecCC----CCCCHHHHHH
Q 047849 514 -----------------GK--------------------------------------EQQITIRSS----GGLSEDEIEK 534 (651)
Q Consensus 514 -----------------~~--------------------------------------~~~~~i~~~----~~ls~~~i~~ 534 (651)
++ .+.+.|... ..|++..++.
T Consensus 562 ~~~~~~~e~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~ 641 (902)
T KOG0104|consen 562 SDDSVQEEDAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDA 641 (902)
T ss_pred cccccchhhhhhhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHH
Confidence 00 002444432 4599999999
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHh--hcccCCCHHHHHHHHHHHHHHHHHhccCC----HHHHHHHH
Q 047849 535 MVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLG--EYREKIPSEVAKEIEDAVADLRKAMGADN----VDDIKSKL 608 (651)
Q Consensus 535 ~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~--~~~~~~~~~~~~~~~~~l~~~~~wl~~~~----~~~~~~k~ 608 (651)
....++.+.+.|+.+.+++++-|+||.++|.+++.|. +|.++.+++++.+|...+..+.+||+.+. ...+.+++
T Consensus 642 ~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~ 721 (902)
T KOG0104|consen 642 AVAKLEDFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKL 721 (902)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 9999999999999999999999999999999999996 57788999999999999999999998763 78889999
Q ss_pred HHHHHHHHHHHHHH
Q 047849 609 DAANKAVSKIGQHM 622 (651)
Q Consensus 609 ~~l~~~~~~i~~~~ 622 (651)
.+|++.+..+..|.
T Consensus 722 a~L~~l~~~~~~R~ 735 (902)
T KOG0104|consen 722 AELKKLETSKNFRE 735 (902)
T ss_pred HHHHHHHhhhhHHH
Confidence 99998888776553
|
|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-52 Score=452.90 Aligned_cols=309 Identities=27% Similarity=0.405 Sum_probs=264.1
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEe----------------------------------------
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFN---------------------------------------- 98 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~---------------------------------------- 98 (651)
++|||||||||+||++.+|.++++++..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 6999999999999999999999999999999999999994
Q ss_pred eCCcEEEcHhHHhhhhhCCCch--hhhhhhhhCCCCCChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHH
Q 047849 99 QKGELLVGTPAKRQAVTNPTNT--LFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLT 176 (651)
Q Consensus 99 ~~~~~~vG~~A~~~~~~~p~~~--i~~~Kr~lg~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~ 176 (651)
.++..++|..|+.+...+|+++ +..+|++||...-.+ +....++++++++|+
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~--------------------------~~~~~~e~l~a~iL~ 135 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP--------------------------QQVALFEDLVCAMML 135 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc--------------------------cceeCHHHHHHHHHH
Confidence 2457789999999999999998 679999999753211 122348999999999
Q ss_pred HHHHHHHHhhCCCCCeEEEEecCCCC-----HHHHHH---HHHHHHHcCCceEEeecchHHHhhhhccccCCC-eEEEEE
Q 047849 177 KMKETAESYLGKSVSKAVITVPAYFN-----DAQRQA---TKDAGRIAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFD 247 (651)
Q Consensus 177 ~l~~~a~~~~~~~~~~~VITVPa~f~-----~~qr~~---l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD 247 (651)
+|++.++.++|.++.++|||||++|+ +.||++ +++||+.|||+++++++||+|||++|+.....+ ++||||
T Consensus 136 ~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D 215 (450)
T PRK11678 136 HIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVD 215 (450)
T ss_pred HHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEE
Confidence 99999999999999999999999998 778776 699999999999999999999999999765544 999999
Q ss_pred eCCcceEEEEEEEeccc----------------------cc------------------ccCCCCc--------------
Q 047849 248 LGGGTFDVSILEISNGV----------------------FE------------------DEGIDLS-------------- 273 (651)
Q Consensus 248 ~GggT~Dvsv~~~~~~~----------------------~~------------------~~~~~~~-------------- 273 (651)
+||||||+|++++.++. |+ +.+.++.
T Consensus 216 ~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~i~ 295 (450)
T PRK11678 216 IGGGTTDCSMLLMGPSWRGRADRSASLLGHSGQRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVP 295 (450)
T ss_pred eCCCeEEEEEEEecCcccccCCcceeEEecCCCCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhccc
Confidence 99999999999985421 11 0011000
Q ss_pred ---------------------cCHHHH------------HHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEe
Q 047849 274 ---------------------KDRLAL------------QRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITL 320 (651)
Q Consensus 274 ---------------------~~~~~~------------~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~i 320 (651)
.++..+ .+|+.+||++|+.||....+.+.++.+. .++...|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~------~~~~~~I 369 (450)
T PRK11678 296 AQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS------DGLATEI 369 (450)
T ss_pred hhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC------CCcceee
Confidence 012222 3678999999999999999999887654 2467999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhh
Q 047849 321 TRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGG 400 (651)
Q Consensus 321 tr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~ 400 (651)
||++|+++++|+++++.++++++|+++++. ++.|+||||+|+||.|++.|++.||.......+|.++||.|+|++|.
T Consensus 370 tR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~a~ 446 (450)
T PRK11678 370 SQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARWAQ 446 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHHHHH
Confidence 999999999999999999999999999975 47999999999999999999999987777788999999999999987
Q ss_pred hc
Q 047849 401 IL 402 (651)
Q Consensus 401 ~l 402 (651)
.+
T Consensus 447 ~~ 448 (450)
T PRK11678 447 VV 448 (450)
T ss_pred hh
Confidence 53
|
|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=317.03 Aligned_cols=298 Identities=22% Similarity=0.301 Sum_probs=220.7
Q ss_pred EEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCC-c-EEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHH
Q 047849 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKG-E-LLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQT 137 (651)
Q Consensus 60 vGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~-~-~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~ 137 (651)
+||||||+||+++.. ++..++. .||+|+|..++ . ..+|..|+.+..+.|.+.... +++
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~------~pi----- 65 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI------RPL----- 65 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE------ccC-----
Confidence 899999999999775 4445554 59999997542 3 479999988766666654321 111
Q ss_pred HHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcC
Q 047849 138 QKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAG 217 (651)
Q Consensus 138 ~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AG 217 (651)
.+ ..+...+++..+|+++.+.+..........+|||||++|++.||+++++|++.||
T Consensus 66 --------------~~---------G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag 122 (336)
T PRK13928 66 --------------RD---------GVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAG 122 (336)
T ss_pred --------------CC---------CeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 11 1223445667777887765543322334479999999999999999999999999
Q ss_pred CceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccCHHHH--H-----HHHHH
Q 047849 218 LDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKDRLAL--Q-----RLREA 285 (651)
Q Consensus 218 l~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~~~~~--~-----~L~~~ 285 (651)
++.+.+++||+|||++|+.+...+ .++|||+||||||+++++.++-.+. ..|.+++..-... . .-...
T Consensus 123 ~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~~~~~~lGG~did~~i~~~l~~~~~~~~~~~~ 202 (336)
T PRK13928 123 AKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVTSSSIKVAGDKFDEAIIRYIRKKYKLLIGERT 202 (336)
T ss_pred CCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEEeCCcCCHHHHHHHHHHHHHHHHhchhcCHHH
Confidence 999999999999999999865444 8999999999999999987543222 1222222211110 0 01347
Q ss_pred HHHhhhhcCCCc----eeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCCCCC-eEE
Q 047849 286 AEKAKIELSSTT----QTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDAN--ITTKDVD-EVL 358 (651)
Q Consensus 286 ~e~~K~~Ls~~~----~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~--~~~~~i~-~Vv 358 (651)
||++|+.++... ...+.+.. .+...+....+.|+|++|+++++++++++.+.+++.|+.++ +....++ .|+
T Consensus 203 ae~lK~~~~~~~~~~~~~~~~v~g--~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~Iv 280 (336)
T PRK13928 203 AEEIKIKIGTAFPGAREEEMEIRG--RDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGII 280 (336)
T ss_pred HHHHHHHhcccccccCCcEEEEec--ccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEE
Confidence 999999987642 12233221 11111245678999999999999999999999999999986 4456677 799
Q ss_pred EecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhc
Q 047849 359 LVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGIL 402 (651)
Q Consensus 359 LvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l 402 (651)
|+||+|++|.|++.|++.|+.++....||+++||+|||+++..+
T Consensus 281 L~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 281 MTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred EECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 99999999999999999999988888999999999999998764
|
|
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=311.79 Aligned_cols=296 Identities=26% Similarity=0.316 Sum_probs=225.3
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCc--EEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChH
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGE--LLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQ 136 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~--~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~ 136 (651)
.+||||||+|+++ +.+++.. +.| .||+|+|+.++. ..||..|+.+..++|.++... + ++.
T Consensus 6 ~~giDlGt~~~~i--~~~~~~~-~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~----pi~--- 67 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKGI-ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R----PMK--- 67 (335)
T ss_pred eEEEEcccccEEE--EECCCcE-Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e----cCC---
Confidence 5999999999985 5555554 333 499999975543 679999999988888876542 1 111
Q ss_pred HHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCC--eEEEEecCCCCHHHHHHHHHHHH
Q 047849 137 TQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVS--KAVITVPAYFNDAQRQATKDAGR 214 (651)
Q Consensus 137 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~--~~VITVPa~f~~~qr~~l~~Aa~ 214 (651)
+| .+..-++++.+|++++..++..++..+. .+|||||++|++.||+++.+|++
T Consensus 68 ----------------~G---------~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~ 122 (335)
T PRK13929 68 ----------------DG---------VIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVK 122 (335)
T ss_pred ----------------CC---------ccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 11 1122378899999999999888876554 79999999999999999999999
Q ss_pred HcCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccCHHHHH-------HH
Q 047849 215 IAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKDRLALQ-------RL 282 (651)
Q Consensus 215 ~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~~~~~~-------~L 282 (651)
.||++++.+++||+|||++|+....+. .++|+|+||||+|++++.+++-.+. -.|.++...-..+. .-
T Consensus 123 ~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~ 202 (335)
T PRK13929 123 NCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSCHSIRIGGDQLDEDIVSFVRKKYNLLIG 202 (335)
T ss_pred HcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEEecCcCCHHHHHHHHHHHHHHHHhCcCcC
Confidence 999999999999999999998775554 8999999999999999986543322 11222211110000 00
Q ss_pred HHHHHHhhhhcCCCc----eeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCCC-
Q 047849 283 REAAEKAKIELSSTT----QTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANIT--TKDVD- 355 (651)
Q Consensus 283 ~~~~e~~K~~Ls~~~----~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~--~~~i~- 355 (651)
...||++|+.++... ...+.+... +........+.+++++|++++.+++.++.+.|.+.|+++... ...++
T Consensus 203 ~~~AE~iK~~l~~~~~~~~~~~~~v~g~--~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~ 280 (335)
T PRK13929 203 ERTAEQVKMEIGYALIEHEPETMEVRGR--DLVTGLPKTITLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDR 280 (335)
T ss_pred HHHHHHHHHHHcCCCCCCCCceEEEeCC--ccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCC
Confidence 257999999998742 122222111 111123467899999999999999999999999999998643 35677
Q ss_pred eEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHh
Q 047849 356 EVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 356 ~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a 399 (651)
.|+|+||+|++|.+++.|++.|+.++....||+++|+.||+..-
T Consensus 281 gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 281 GVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred CEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 69999999999999999999999988888999999999999874
|
|
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=295.76 Aligned_cols=297 Identities=24% Similarity=0.307 Sum_probs=211.1
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeC-Cc-EEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChH
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQK-GE-LLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQ 136 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~-~~-~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~ 136 (651)
.|||||||++++++.. +...++ .+||+|+|.++ +. .++|+.|+.+..++|.++... +-+
T Consensus 7 ~igIDlGt~~~~i~~~--~~~~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~--~pi-------- 67 (334)
T PRK13927 7 DLGIDLGTANTLVYVK--GKGIVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI--RPM-------- 67 (334)
T ss_pred eeEEEcCcceEEEEEC--CCcEEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE--ecC--------
Confidence 5999999999998443 333333 27999999755 33 589999998876666654321 001
Q ss_pred HHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHc
Q 047849 137 TQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIA 216 (651)
Q Consensus 137 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~A 216 (651)
.+| ..... +.+..+|+++......... .-..+|+|||++|++.||+++++|++.|
T Consensus 68 ---------------~~G--------~i~d~-~~~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a~~~a 122 (334)
T PRK13927 68 ---------------KDG--------VIADF-DVTEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRESALGA 122 (334)
T ss_pred ---------------CCC--------eecCH-HHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 111 11111 2234445554443332221 1248999999999999999999999999
Q ss_pred CCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccCHHHH--H-----HHHH
Q 047849 217 GLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKDRLAL--Q-----RLRE 284 (651)
Q Consensus 217 Gl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~~~~~--~-----~L~~ 284 (651)
|++.+.+++||+|||++|+...... .++|||+||||||+++++.++..+. ..|.+++..-..+ . .-..
T Consensus 123 g~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~ 202 (334)
T PRK13927 123 GAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIVYSKSVRVGGDKFDEAIINYVRRNYNLLIGER 202 (334)
T ss_pred CCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeEeeCCcCChHHHHHHHHHHHHHHHhCcCcCHH
Confidence 9999999999999999999865544 7899999999999999986653332 1122222111100 0 0135
Q ss_pred HHHHhhhhcCCCce----eEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCCC-eE
Q 047849 285 AAEKAKIELSSTTQ----TDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANIT--TKDVD-EV 357 (651)
Q Consensus 285 ~~e~~K~~Ls~~~~----~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~--~~~i~-~V 357 (651)
.||++|+.++.... ..+.+.. .+.....+..+.|+|++|++++.+.++++.+.|.++|++++.. ...++ .|
T Consensus 203 ~ae~iK~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~I 280 (334)
T PRK13927 203 TAERIKIEIGSAYPGDEVLEMEVRG--RDLVTGLPKTITISSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGI 280 (334)
T ss_pred HHHHHHHHhhccCCCCCCceEEEeC--cccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCE
Confidence 69999999986432 2233211 1111113457899999999999999999999999999998643 23344 59
Q ss_pred EEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 358 LLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 358 vLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
+|+||+|++|.+++.|++.|+.++....||+++||+||++++..
T Consensus 281 vL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 281 VLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred EEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999988888899999999999999775
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=294.82 Aligned_cols=297 Identities=24% Similarity=0.295 Sum_probs=209.7
Q ss_pred EEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeC----Cc--EEEcHhHHhhhhhCCCchhhhhhhhhCCCCC
Q 047849 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQK----GE--LLVGTPAKRQAVTNPTNTLFGTKRLIGRKFD 133 (651)
Q Consensus 60 vGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~----~~--~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~ 133 (651)
+||||||+||++++... ..++ ..||+|+|..+ .. .++|+.|+.+..+.|.++.. ++-+.
T Consensus 5 ~giDlGt~~s~i~~~~~--~~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~~pi~---- 69 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGR--GIVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVA--IRPMK---- 69 (333)
T ss_pred eEEecCcceEEEEECCC--CEEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEE--EecCC----
Confidence 89999999999877432 2333 37999999744 22 67999998876565655421 22121
Q ss_pred ChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHH
Q 047849 134 DPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAG 213 (651)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa 213 (651)
+| ..... +.+..+++++........+.....+|+|||++|+..||+++++|+
T Consensus 70 -------------------~G--------~i~d~-~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~ 121 (333)
T TIGR00904 70 -------------------DG--------VIADF-EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESA 121 (333)
T ss_pred -------------------CC--------EEEcH-HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 11 11122 223344444444333222222238999999999999999999999
Q ss_pred HHcCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccCHHH--HHH-----
Q 047849 214 RIAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKDRLA--LQR----- 281 (651)
Q Consensus 214 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~~~~--~~~----- 281 (651)
+.||++.+.+++||+|||++|+...... .++|||+||||||+++++.++..+. ..|.+++..-.. ..+
T Consensus 122 ~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~~~~lGG~did~~l~~~l~~~~~~~~ 201 (333)
T TIGR00904 122 LSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRSIRVGGDEFDEAIINYIRRTYNLLI 201 (333)
T ss_pred HHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEEecCCccchHHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999998765444 8999999999999999987654433 122222211100 001
Q ss_pred HHHHHHHhhhhcCCCce-----eEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCC-
Q 047849 282 LREAAEKAKIELSSTTQ-----TDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITT-KDV- 354 (651)
Q Consensus 282 L~~~~e~~K~~Ls~~~~-----~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~-~~i- 354 (651)
-+..||++|+.++.... ..+.+.. .+........+.|++++|.+++.+.++++.+.+.+.|+.++... .++
T Consensus 202 ~~~~ae~lK~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~ 279 (333)
T TIGR00904 202 GEQTAERIKIEIGSAYPLNDEPRKMEVRG--RDLVTGLPRTIEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIV 279 (333)
T ss_pred CHHHHHHHHHHHhccccccccccceeecC--ccccCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhc
Confidence 13579999999976422 1222211 01001123457899999999999999999999999999976432 233
Q ss_pred C-eEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 355 D-EVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 355 ~-~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
+ .|+|+||+|++|.+++.|++.|+.++....||+++||.||++++..
T Consensus 280 ~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 280 ERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred cCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 3 6999999999999999999999999988999999999999999764
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=287.01 Aligned_cols=299 Identities=25% Similarity=0.314 Sum_probs=215.4
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeC-C-cEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChH
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQK-G-ELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQ 136 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~-~-~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~ 136 (651)
.+||||||++++++++..+ .++ .+||+|+|..+ + ..++|..|+......|.+... ++
T Consensus 10 ~vgiDlGt~~t~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~~---------- 68 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEA--IR---------- 68 (335)
T ss_pred ceEEEcCCCcEEEEECCCC--EEE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEE--ee----------
Confidence 4999999999999886332 232 25999999642 2 368999998876555544211 10
Q ss_pred HHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHc
Q 047849 137 TQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIA 216 (651)
Q Consensus 137 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~A 216 (651)
|+ .+| .. ..-+.+..+|+++.+.+..........+|+|+|++|++.+|+++.+|++.+
T Consensus 69 --------pi-----~~G--------~i-~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~ 126 (335)
T PRK13930 69 --------PL-----KDG--------VI-ADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHA 126 (335)
T ss_pred --------cC-----CCC--------eE-cCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHc
Confidence 10 111 11 122446677777776655544444678999999999999999999999999
Q ss_pred CCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccCHHHH--HH-----HHH
Q 047849 217 GLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKDRLAL--QR-----LRE 284 (651)
Q Consensus 217 Gl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~~~~~--~~-----L~~ 284 (651)
|++.+.+++||+|||++|+...... .++|||+||||||++++..+..... ..|.+++..-... .+ -..
T Consensus 127 g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~ 206 (335)
T PRK13930 127 GAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVYSESIRVAGDEMDEAIVQYVRRKYNLLIGER 206 (335)
T ss_pred CCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEeecCcCchhHHHHHHHHHHHHHHhCCCCCHH
Confidence 9999999999999999998765443 7899999999999999986543221 2222222111100 00 126
Q ss_pred HHHHhhhhcCCCcee----EEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCCCe-E
Q 047849 285 AAEKAKIELSSTTQT----DINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANIT--TKDVDE-V 357 (651)
Q Consensus 285 ~~e~~K~~Ls~~~~~----~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~--~~~i~~-V 357 (651)
.||++|+.++..... .+.+... +...+....+.|++++|++++.+.++++.+.+.+.|+.+... ...++. |
T Consensus 207 ~ae~~K~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~I 284 (335)
T PRK13930 207 TAEEIKIEIGSAYPLDEEESMEVRGR--DLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGI 284 (335)
T ss_pred HHHHHHHHhhcCcCCCCCceEEEECc--cCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCE
Confidence 799999999865321 2222211 111113357899999999999999999999999999987532 233454 9
Q ss_pred EEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhc
Q 047849 358 LLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGIL 402 (651)
Q Consensus 358 vLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l 402 (651)
+|+||+|++|.+++.|++.|+.++....+|+++||+||++++...
T Consensus 285 vL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 285 VLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred EEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhCh
Confidence 999999999999999999999888888899999999999998653
|
|
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=246.01 Aligned_cols=197 Identities=23% Similarity=0.300 Sum_probs=163.9
Q ss_pred ChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCceEEeecchHHHhhhhccccCCCeEEE
Q 047849 166 SPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEGLIAV 245 (651)
Q Consensus 166 s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlV 245 (651)
.--+..+++|+++++.++.+++.++.++|||||++|++.||+++.+|++.|||+++.+++||.|||++|+.. ..+|
T Consensus 37 ~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~----~~~v 112 (239)
T TIGR02529 37 VDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK----NGAV 112 (239)
T ss_pred EEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC----CcEE
Confidence 345678899999999999999999999999999999999999999999999999999999999999998754 3599
Q ss_pred EEeCCcceEEEEEEEeccccc----ccCCCCccCH-HHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEe
Q 047849 246 FDLGGGTFDVSILEISNGVFE----DEGIDLSKDR-LALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITL 320 (651)
Q Consensus 246 vD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~~-~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~i 320 (651)
+|+||||+|+++++.+.-.+. ..|.+++..- ..+..-+.+||++|+.++.
T Consensus 113 vDiGggtt~i~i~~~G~i~~~~~~~~GG~~it~~Ia~~~~i~~~~AE~~K~~~~~------------------------- 167 (239)
T TIGR02529 113 VDVGGGTTGISILKKGKVIYSADEPTGGTHMSLVLAGAYGISFEEAEEYKRGHKD------------------------- 167 (239)
T ss_pred EEeCCCcEEEEEEECCeEEEEEeeecchHHHHHHHHHHhCCCHHHHHHHHHhcCC-------------------------
Confidence 999999999999875443333 1222222211 1111235789999987541
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHH
Q 047849 321 TRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAI 397 (651)
Q Consensus 321 tr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~ 397 (651)
.+++.++++++++++.+.+++.|++. .++.|+|+||+|++|.+++.+++.|+.++..+.||++++|.|||+
T Consensus 168 -~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 168 -EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence 34577899999999999999999864 457999999999999999999999999999999999999999986
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=252.31 Aligned_cols=298 Identities=26% Similarity=0.317 Sum_probs=198.5
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCC--cEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChH
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKG--ELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQ 136 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~--~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~ 136 (651)
-+||||||+++.++. . ++-.++. .||+|+|+.+. -..+|..|+.+..+.|.+...
T Consensus 3 ~igIDLGT~~t~i~~-~-~~Giv~~-------epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~-------------- 59 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYV-K-GKGIVLN-------EPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEV-------------- 59 (326)
T ss_dssp EEEEEE-SSEEEEEE-T-TTEEEEE-------EES-EEEETTT--EEEESHHHHTTTTS-GTTEEE--------------
T ss_pred ceEEecCcccEEEEE-C-CCCEEEe-------cCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEE--------------
Confidence 589999999998833 3 3333332 39999997643 345899998766555544311
Q ss_pred HHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHc
Q 047849 137 TQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIA 216 (651)
Q Consensus 137 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~A 216 (651)
..| .....+.=-++...+|+++.+.+.......-..++|+||+.-++-+|+++.+|+..|
T Consensus 60 ------~~P--------------l~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~a 119 (326)
T PF06723_consen 60 ------VRP--------------LKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQA 119 (326)
T ss_dssp ------E-S--------------EETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHT
T ss_pred ------Ecc--------------ccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 001 111222334567778888877776642334458999999999999999999999999
Q ss_pred CCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccC-------HHHHHHHHH
Q 047849 217 GLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKD-------RLALQRLRE 284 (651)
Q Consensus 217 Gl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~-------~~~~~~L~~ 284 (651)
|...+.+++||.|||+..+.+-.+. ..||+|+||||||++++..++-+.. ..|.++... .+.+..=..
T Consensus 120 Ga~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~s~si~~gG~~~DeaI~~~ir~~y~l~Ig~~ 199 (326)
T PF06723_consen 120 GARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVASRSIRIGGDDIDEAIIRYIREKYNLLIGER 199 (326)
T ss_dssp T-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHHHHHHHHHHHSEE--HH
T ss_pred CCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEEEEEEEecCcchhHHHHHHHHHhhCcccCHH
Confidence 9999999999999999999886554 8899999999999999975443222 111111111 011112246
Q ss_pred HHHHhhhhcCCCce----eEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCC--CeE
Q 047849 285 AAEKAKIELSSTTQ----TDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITT-KDV--DEV 357 (651)
Q Consensus 285 ~~e~~K~~Ls~~~~----~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~-~~i--~~V 357 (651)
.||++|+.+++... ..+.+. ..+...+..-.+.|+-+++.+.+++.+.+|.+.|+++|+...-.. .|| ++|
T Consensus 200 tAE~iK~~~g~~~~~~~~~~~~v~--Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~pPel~~DI~~~GI 277 (326)
T PF06723_consen 200 TAEKIKIEIGSASPPEEEESMEVR--GRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVLEKTPPELAADILENGI 277 (326)
T ss_dssp HHHHHHHHH-BSS--HHHHEEEEE--EEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-E
T ss_pred HHHHHHHhcceeeccCCCceEEEE--CccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHCCE
Confidence 79999999986522 233332 222223356789999999999999999999999999999842110 122 479
Q ss_pred EEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 358 LLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 358 vLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
+|+||+|+++.+.+.|++.++.++....||..+||.||......
T Consensus 278 ~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~~ 321 (326)
T PF06723_consen 278 VLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLEN 321 (326)
T ss_dssp EEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC-
T ss_pred EEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999876543
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=227.58 Aligned_cols=197 Identities=27% Similarity=0.368 Sum_probs=162.8
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCceEEeecchHHHhhhhccccCCCeEEEEE
Q 047849 168 SQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFD 247 (651)
Q Consensus 168 eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD 247 (651)
.+.....|+++++.++.++|.++..++++||++|+..+|+++.+|++.|||++..+++||.|++.+|... ..+|+|
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~----~~~vvD 141 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID----NGAVVD 141 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC----CcEEEE
Confidence 4566778899999999999988999999999999999999999999999999999999999999988653 269999
Q ss_pred eCCcceEEEEEEEeccccc----ccCCCCccCH-HHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecH
Q 047849 248 LGGGTFDVSILEISNGVFE----DEGIDLSKDR-LALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTR 322 (651)
Q Consensus 248 ~GggT~Dvsv~~~~~~~~~----~~~~~~~~~~-~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr 322 (651)
+||||||+++++-+.-.+. ..+.+++.+- +.+..-+.+||++|+.++ ++
T Consensus 142 IGggtt~i~v~~~g~~~~~~~~~~GG~~it~~Ia~~l~i~~~eAE~lK~~~~--------------------------~~ 195 (267)
T PRK15080 142 IGGGTTGISILKDGKVVYSADEPTGGTHMSLVLAGAYGISFEEAEQYKRDPK--------------------------HH 195 (267)
T ss_pred eCCCcEEEEEEECCeEEEEecccCchHHHHHHHHHHhCCCHHHHHHHHhccC--------------------------CH
Confidence 9999999999864332322 1222222211 111223678899987652 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHh
Q 047849 323 SKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 323 ~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a 399 (651)
+++.++++++++++.+.+++.++.. .++.|+|+||+|++|.+++.+++.|+.++....||++++|.|||+|+
T Consensus 196 ~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 196 KEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHhCCCcccCCCchHHHHHHHHhhC
Confidence 6789999999999999999999863 67899999999999999999999999999899999999999999875
|
|
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-24 Score=209.71 Aligned_cols=301 Identities=25% Similarity=0.316 Sum_probs=216.7
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeC--C--cEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCC
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQK--G--ELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDD 134 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~--~--~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~ 134 (651)
.+||||||.|+.|..- ++. ++.| -||+|++..+ . -..+|.+|+.+.-+.|.+...
T Consensus 8 diGIDLGTanTlV~~k--~kg-IVl~------ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~a------------ 66 (342)
T COG1077 8 DIGIDLGTANTLVYVK--GKG-IVLN------EPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVA------------ 66 (342)
T ss_pred cceeeecccceEEEEc--Cce-EEec------CceEEEEeecCCCceEEEehHHHHHHhccCCCCceE------------
Confidence 6999999999998554 222 3332 3999999763 2 245899998765555554311
Q ss_pred hHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhC-CCCCeEEEEecCCCCHHHHHHHHHHH
Q 047849 135 PQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLG-KSVSKAVITVPAYFNDAQRQATKDAG 213 (651)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~-~~~~~~VITVPa~f~~~qr~~l~~Aa 213 (651)
+.+..+| .+.--++...+|+|+.+.+....+ .....++|.||..-++-+|+++++|+
T Consensus 67 -------------iRPmkdG---------VIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~ 124 (342)
T COG1077 67 -------------IRPMKDG---------VIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA 124 (342)
T ss_pred -------------EeecCCc---------EeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH
Confidence 1111222 233445677778888777764333 34457999999999999999999999
Q ss_pred HHcCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccCHHH-------HHH
Q 047849 214 RIAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKDRLA-------LQR 281 (651)
Q Consensus 214 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~~~~-------~~~ 281 (651)
+.||...+.++.||.|||+..+..-.+. .-||||+||||+|++++.+.+-+.. -.|..+..+.-. +..
T Consensus 125 ~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~~~Sirv~GD~~De~Ii~yvr~~~nl~I 204 (342)
T COG1077 125 ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVSSSSVRVGGDKMDEAIIVYVRKKYNLLI 204 (342)
T ss_pred HhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEEEeeEEEecchhhHHHHHHHHHHhCeee
Confidence 9999999999999999999888775554 5699999999999999987664433 222222222111 111
Q ss_pred HHHHHHHhhhhcCCCce---e-EEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCCCCC
Q 047849 282 LREAAEKAKIELSSTTQ---T-DINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDAN--ITTKDVD 355 (651)
Q Consensus 282 L~~~~e~~K~~Ls~~~~---~-~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~--~~~~~i~ 355 (651)
=-..+|++|+....... . ...++.-..+...+..-.++++-+++.+.+++.+++|.+.++..|+... +..+-++
T Consensus 205 Ge~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~e 284 (342)
T COG1077 205 GERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVE 284 (342)
T ss_pred cHHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhh
Confidence 23568999999876422 1 1112222222222244578999999999999999999999999999843 3333445
Q ss_pred e-EEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhc
Q 047849 356 E-VLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGIL 402 (651)
Q Consensus 356 ~-VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l 402 (651)
. ++|+||+|.+..+.+.|++..+.++....+|..+||.|+......+
T Consensus 285 rgivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~ 332 (342)
T COG1077 285 RGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEAL 332 (342)
T ss_pred CceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhh
Confidence 5 9999999999999999999999999999999999999998876654
|
|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=210.02 Aligned_cols=188 Identities=19% Similarity=0.331 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHcCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccCH-H
Q 047849 204 AQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKDR-L 277 (651)
Q Consensus 204 ~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~~-~ 277 (651)
...+.+.+|++.|||++..++.||.|+|++|....... .++|+|+||||||++++..+...|. ..|.+++.+- .
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~~~~i~~GG~~it~~i~~ 237 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRYTKVIPIGGNHITKDIAK 237 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEEEeeecchHHHHHHHHHH
Confidence 34677888999999999999999999999986543333 8999999999999999975443332 2233333332 2
Q ss_pred HHHHHHHHHHHhhhhcCCC------ceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHH-HHHHHcCCC
Q 047849 278 ALQRLREAAEKAKIELSST------TQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCK-NCLKDANIT 350 (651)
Q Consensus 278 ~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~-~~l~~a~~~ 350 (651)
.+...+.+||++|+.++.. .+..+.++.+. .+....++|++|++++++.++++.+.++ +.|++++.+
T Consensus 238 ~l~~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~is~~~l~~ii~~~~~ei~~~i~~~~L~~~~~~ 311 (371)
T TIGR01174 238 ALRTPLEEAERIKIKYGCASIPLEGPDENIEIPSVG------ERPPRSLSRKELAEIIEARAEEILEIVKQKELRKSGFK 311 (371)
T ss_pred HhCCCHHHHHHHHHHeeEecccCCCCCCEEEeccCC------CCCCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3345678999999999864 23455555432 2456899999999999999999999997 999998876
Q ss_pred CCCCCe-EEEecCccCcHhHHHHHHHHhcCCCCC------------cCCccchheehhHHH
Q 047849 351 TKDVDE-VLLVGGMTRVPKVQEVVSEIFGKSPSK------------GVNPDEAVALGAAIQ 398 (651)
Q Consensus 351 ~~~i~~-VvLvGGss~ip~i~~~l~~~f~~~~~~------------~~~p~~aVA~GAa~~ 398 (651)
.+++. |+|+||+|++|.|++.+++.|+.++.. ..+|..++|.|.++|
T Consensus 312 -~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 312 -EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred -ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHHHHHHHHhC
Confidence 56776 999999999999999999999865321 126788888888764
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-22 Score=216.20 Aligned_cols=190 Identities=17% Similarity=0.238 Sum_probs=140.0
Q ss_pred HHHHHHHHHHcCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccCH-HHH
Q 047849 206 RQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKDR-LAL 279 (651)
Q Consensus 206 r~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~~-~~~ 279 (651)
.+.+.+|++.|||++..++.||.|+|.++..+...+ .++|+|+||||||+++++-+.-.+. ..|.+++.+- ..+
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~~~~i~~GG~~it~dIa~~l 247 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDIAYAF 247 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEEEeeeechHHHHHHHHHHHh
Confidence 344567999999999999999999999987665434 8999999999999999973321111 2333333322 122
Q ss_pred HHHHHHHHHhhhhcCCC------ceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHH-------HHHH
Q 047849 280 QRLREAAEKAKIELSST------TQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKN-------CLKD 346 (651)
Q Consensus 280 ~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~-------~l~~ 346 (651)
...+..||++|+.++.. .+..+.++.+.. .....++|.+|.+++++.++++.+.+++ .|..
T Consensus 248 ~i~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~------~~~~~i~~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~ 321 (420)
T PRK09472 248 GTPPSDAEAIKVRHGCALGSIVGKDESVEVPSVGG------RPPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQ 321 (420)
T ss_pred CcCHHHHHHHHHhcceeccccCCCCceeEecCCCC------CCCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33468899999776532 233455543321 1235889999999999977777777764 5566
Q ss_pred cCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCC------------cCCccchheehhHHHhhh
Q 047849 347 ANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSK------------GVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 347 a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~------------~~~p~~aVA~GAa~~a~~ 401 (651)
+++....++.|+|+||+|++|.|++.+++.|+.++.. ..+|..++|.|.++|+..
T Consensus 322 ~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 322 QGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred cCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCcHHHHHHHHHHHhhh
Confidence 7887778899999999999999999999999865432 248999999999999773
|
|
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-19 Score=186.80 Aligned_cols=232 Identities=24% Similarity=0.370 Sum_probs=173.2
Q ss_pred eCC-eeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCC-HHH---------------------------HHHHH
Q 047849 160 ANG-QQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFN-DAQ---------------------------RQATK 210 (651)
Q Consensus 160 ~~~-~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~-~~q---------------------------r~~l~ 210 (651)
..+ +.++.+++- .+.+.|......+-..++-..|-.|. |.| -+.+.
T Consensus 97 i~~~~eIt~~DI~-----rvl~~A~~~~~~~~~~ilh~~p~~y~vD~~~~I~dP~gm~G~rL~v~vhvit~~~~~~~Nl~ 171 (418)
T COG0849 97 ISEEKEITQEDIE-----RVLEAAKAVAIPPEREILHVIPQEYIVDGQEGIKDPLGMSGVRLEVEVHVITGPKNILENLE 171 (418)
T ss_pred cCCCCccCHHHHH-----HHHHHHHhhccCCCceEEEEeeeEEEECCccccCCccccccceEEEEEEEEEcchHHHHHHH
Confidence 444 666777664 44444444333333556556665553 221 67789
Q ss_pred HHHHHcCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccC-HHHHHHHHH
Q 047849 211 DAGRIAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKD-RLALQRLRE 284 (651)
Q Consensus 211 ~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~-~~~~~~L~~ 284 (651)
+|.+.+||++..++.+|.|+|.+...+...+ +++++|+||||||+++++-+.-.+. -.|..++.+ .+.+..-+.
T Consensus 172 k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~~~ipvgG~~vT~DIa~~l~t~~~ 251 (418)
T COG0849 172 KCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYTGVIPVGGDHVTKDIAKGLKTPFE 251 (418)
T ss_pred HHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEEeeEeeCccHHHHHHHHHhCCCHH
Confidence 9999999999999999999999887766555 9999999999999999984433222 344445444 234445578
Q ss_pred HHHHhhhhcCCCce------eEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEE
Q 047849 285 AAEKAKIELSSTTQ------TDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVL 358 (651)
Q Consensus 285 ~~e~~K~~Ls~~~~------~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~Vv 358 (651)
.||+.|+.+..... ..+.++...+ +....+||.++.+++++.+.++..+++..|++.++...-...|+
T Consensus 252 ~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~------~~~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvV 325 (418)
T COG0849 252 EAERIKIKYGSALISLADDEETIEVPSVGS------DIPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVV 325 (418)
T ss_pred HHHHHHHHcCccccCcCCCcceEecccCCC------cccchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEE
Confidence 99999999976532 3355544432 23788999999999999999999999999999999866778999
Q ss_pred EecCccCcHhHHHHHHHHhcCCCC--C----------cCCccchheehhHHHhhhc
Q 047849 359 LVGGMTRVPKVQEVVSEIFGKSPS--K----------GVNPDEAVALGAAIQGGIL 402 (651)
Q Consensus 359 LvGGss~ip~i~~~l~~~f~~~~~--~----------~~~p~~aVA~GAa~~a~~l 402 (651)
|+||++.+|.+.+..++.|+.++. . ..+|..+.|.|..+|+...
T Consensus 326 lTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 326 LTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred EECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccCchhhhhHHHHHHHhhc
Confidence 999999999999999999985432 1 2368999999999998853
|
|
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-15 Score=141.36 Aligned_cols=192 Identities=22% Similarity=0.316 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcc
Q 047849 173 FVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGT 252 (651)
Q Consensus 173 ~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT 252 (651)
.+.+.+++.+++.+|..++++.-++|..--+...+...+..+.||++++.+++||+|||.-..++. -.|+|+||||
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~d----g~VVDiGGGT 151 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDD----GGVVDIGGGT 151 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCC----CcEEEeCCCc
Confidence 357899999999999999999999999987777788888999999999999999999997666553 3799999999
Q ss_pred eEEEEEEEeccccc----ccCCCCccCH-HHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHH
Q 047849 253 FDVSILEISNGVFE----DEGIDLSKDR-LALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFET 327 (651)
Q Consensus 253 ~Dvsv~~~~~~~~~----~~~~~~~~~~-~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~ 327 (651)
+-+|+++-++-.|. ..|..++.-- -.+..-+++||..|+.-... ++.-.
T Consensus 152 TGIsi~kkGkViy~ADEpTGGtHmtLvlAG~ygi~~EeAE~~Kr~~k~~--------------------------~Eif~ 205 (277)
T COG4820 152 TGISIVKKGKVIYSADEPTGGTHMTLVLAGNYGISLEEAEQYKRGHKKG--------------------------EEIFP 205 (277)
T ss_pred ceeEEEEcCcEEEeccCCCCceeEEEEEecccCcCHhHHHHhhhccccc--------------------------hhccc
Confidence 99999986554443 1111110000 00111236677776532111 12234
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHh
Q 047849 328 LVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 328 l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a 399 (651)
.+.|+++++.+.+.+.++.. .+..+.|+||+|.-|.+.+.+++.|+..+..+..|....-+|.|+-+
T Consensus 206 ~v~PV~eKMAeIv~~hie~~-----~i~dl~lvGGac~~~g~e~~Fe~~l~l~v~~P~~p~y~TPLgIA~sg 272 (277)
T COG4820 206 VVKPVYEKMAEIVARHIEGQ-----GITDLWLVGGACMQPGVEELFEKQLALQVHLPQHPLYMTPLGIASSG 272 (277)
T ss_pred chhHHHHHHHHHHHHHhccC-----CCcceEEecccccCccHHHHHHHHhccccccCCCcceechhhhhhcc
Confidence 57899999999999999874 45689999999999999999999999999999999998888887643
|
|
| >PLN00130 succinate dehydrogenase (SDH3); Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-17 Score=147.11 Aligned_cols=77 Identities=48% Similarity=0.812 Sum_probs=73.7
Q ss_pred CchhhHHhHhhccccCCCCcccccccCCCCCCCCCccccccccccccccccCCCCCCcEEEEEcCCceEEEEEEeCC
Q 047849 1 MATSVLLRQLRRRDVASAPISAYKCFTSNIKPSWAPSNLGKSWASLTRPFSSKPAGNDIIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvGID~GTt~s~va~~~~~ 77 (651)
|||+||+||||||+++|+|||.|+|.+.+.+|+|.+++++++|+.|.+.|+..+...-+||+|+||+|++++...+.
T Consensus 1 ma~~al~rs~rrrdv~sapls~y~~~~~~~~p~w~~s~~~qn~a~~sra~~~kp~~~d~~g~~~gt~n~~~~~~e~~ 77 (213)
T PLN00130 1 MAATALFRSIRRRDVVSAPLSVYKSLAGNAQPSWGSSYIGQNYASFSRAFGSKPVVNDILGTGLGTNNAIREEREKS 77 (213)
T ss_pred CchHHHHHHHHhhhhhcCchHHHHHhhcCCCCCccccccccchHHHHHHhcCCCCccceeccCCCcchHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999887643
|
|
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-14 Score=153.03 Aligned_cols=292 Identities=16% Similarity=0.133 Sum_probs=173.7
Q ss_pred EEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeC---------CcEEEcHhHHhhhhhCCCchhhhhhhhhCC
Q 047849 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQK---------GELLVGTPAKRQAVTNPTNTLFGTKRLIGR 130 (651)
Q Consensus 60 vGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~---------~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~ 130 (651)
|.||+||.++++++..++.|..+ +||+++...+ ...++|+.|...... +
T Consensus 2 iViD~Gs~~~r~G~a~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-------------~- 59 (371)
T cd00012 2 VVIDNGSGTIKAGFAGEDAPRVV--------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-------------G- 59 (371)
T ss_pred EEEECCCCeEEEEeCCCCCCceE--------eeccceeecCcccccccCCCceEEchhhhhCCCC-------------c-
Confidence 78999999999999877656543 3777766432 356778776542100 0
Q ss_pred CCCChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHH
Q 047849 131 KFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATK 210 (651)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~ 210 (651)
.....|+ .+| .... -+....+++++...... ....-..+++++|..++..+|+.+.
T Consensus 60 ---------~~~~~P~-----~~G--------~i~d-~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~ 115 (371)
T cd00012 60 ---------LELIYPI-----EHG--------IVVD-WDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTT 115 (371)
T ss_pred ---------eEEcccc-----cCC--------EEeC-HHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHH
Confidence 0001111 111 1112 23344555555433211 1122457999999999988888887
Q ss_pred HH-HHHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEEEeccccc------ccCCCCccCHH------
Q 047849 211 DA-GRIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFE------DEGIDLSKDRL------ 277 (651)
Q Consensus 211 ~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~------~~~~~~~~~~~------ 277 (651)
+. .+..|++.+.++++|.+|+++++. .+.+|+|+|+++++++.+.-+.-... ..|.++...-.
T Consensus 116 e~lfe~~~~~~v~~~~~~~~a~~~~g~----~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~ 191 (371)
T cd00012 116 EIMFETFNVPALYVAIQAVLSLYASGR----TTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRER 191 (371)
T ss_pred HHhhccCCCCEEEEechHHHHHHhcCC----CeEEEEECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHHhc
Confidence 64 666899999999999999998875 37899999999999998752211110 11111111100
Q ss_pred ----HHHHHHHHHHHhhhhcCCCcee---E-----EEecceeccCCCCeeEEEEecHHHH---HHHHHH-----HHHHHH
Q 047849 278 ----ALQRLREAAEKAKIELSSTTQT---D-----INLPFITADASGAKHLNITLTRSKF---ETLVNN-----LIERTR 337 (651)
Q Consensus 278 ----~~~~L~~~~e~~K~~Ls~~~~~---~-----i~i~~~~~~~~g~~~~~~~itr~~f---e~l~~~-----~~~~i~ 337 (651)
....-...++..|+.+...... . ...........-++...+.++.+.| |-+++| ....+.
T Consensus 192 ~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~ 271 (371)
T cd00012 192 GYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGRTIKVGNERFRAPEILFNPSLIGSEQVGIS 271 (371)
T ss_pred CCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCeEEEEChHHhhChHhcCChhhcCCCcCCHH
Confidence 0011235577788776432110 0 0000000000000123455665544 223333 223677
Q ss_pred HHHHHHHHHcCC--CCCCCCeEEEecCccCcHhHHHHHHHHhcC----------CCCCcCCccchheehhHHHhhh
Q 047849 338 APCKNCLKDANI--TTKDVDEVLLVGGMTRVPKVQEVVSEIFGK----------SPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 338 ~~i~~~l~~a~~--~~~~i~~VvLvGGss~ip~i~~~l~~~f~~----------~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
+.|.+.|..... ...-.+.|+|+||+|++|.+.+.|.+.+.. .+....+|..++-+||+++|..
T Consensus 272 ~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 272 EAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 888888877542 223467899999999999999999998852 1234568899999999999875
|
Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins. |
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.1e-13 Score=142.79 Aligned_cols=286 Identities=17% Similarity=0.158 Sum_probs=169.0
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCC--------cEEEcHhHHhhhhhCCCchhhhhhhhhCC
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKG--------ELLVGTPAKRQAVTNPTNTLFGTKRLIGR 130 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~--------~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~ 130 (651)
.|.||+||.++++++..+..|.++. ||+|+...++ ..++|..|.... ...
T Consensus 3 ~iviD~Gs~~~k~G~~~~~~P~~~~--------ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~----~~~---------- 60 (373)
T smart00268 3 AIVIDNGSGTIKAGFAGEDEPQVVF--------PSIVGRPKDGKGMVGDAKDTFVGDEAQEKR----GGL---------- 60 (373)
T ss_pred eEEEECCCCcEEEeeCCCCCCcEEc--------cceeeEecccccccCCCcceEecchhhhcC----CCc----------
Confidence 6899999999999998777777653 8888875443 246677663211 000
Q ss_pred CCCChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCC--CCCeEEEEecCCCCHHHHHH
Q 047849 131 KFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGK--SVSKAVITVPAYFNDAQRQA 208 (651)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~--~~~~~VITVPa~f~~~qr~~ 208 (651)
.-.+|+ .+| .+.--+.+..+++++... .++. .-..+++|.|...+..+|+.
T Consensus 61 ----------~~~~P~-----~~G---------~i~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~~~r~~ 113 (373)
T smart00268 61 ----------ELKYPI-----EHG---------IVENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPKSNREK 113 (373)
T ss_pred ----------eecCCC-----cCC---------EEeCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCHHHHHH
Confidence 001111 111 122234455666666543 2322 23579999999999999999
Q ss_pred HHHHH-HHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEEEeccccc-------ccCCCCccCHH-H-
Q 047849 209 TKDAG-RIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFE-------DEGIDLSKDRL-A- 278 (651)
Q Consensus 209 l~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~-------~~~~~~~~~~~-~- 278 (651)
+.+.+ +..|++.+.++++|.+|+++++. .+.+|+|+|+++++++.+.-+ .... ..|.++...-. .
T Consensus 114 ~~e~lfE~~~~~~v~~~~~~~~a~~~~g~----~~~lVVDiG~~~t~v~pv~~G-~~~~~~~~~~~~GG~~l~~~l~~~l 188 (373)
T smart00268 114 ILEIMFETFNFPALYIAIQAVLSLYASGR----TTGLVIDSGDGVTHVVPVVDG-YVLPHAIKRIDIAGRDLTDYLKELL 188 (373)
T ss_pred HHHHhhccCCCCeEEEeccHHHHHHhCCC----CEEEEEecCCCcceEEEEECC-EEchhhheeccCcHHHHHHHHHHHH
Confidence 98886 46799999999999999998872 378999999999999988622 1111 11111111000 0
Q ss_pred --------HHHHHHHHHHhhhhcCCCcee---EEE----------ecceeccCCCCeeEEEEecHHHH---HHHHHHH--
Q 047849 279 --------LQRLREAAEKAKIELSSTTQT---DIN----------LPFITADASGAKHLNITLTRSKF---ETLVNNL-- 332 (651)
Q Consensus 279 --------~~~L~~~~e~~K~~Ls~~~~~---~i~----------i~~~~~~~~g~~~~~~~itr~~f---e~l~~~~-- 332 (651)
...-...++.+|+.+...... ... ....+...+| . .+.+..+.| |.+++|-
T Consensus 189 ~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpdg-~--~~~~~~er~~~~E~lf~p~~~ 265 (373)
T smart00268 189 SERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPDG-N--TIKVGNERFRIPEILFKPELI 265 (373)
T ss_pred HhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCCC-C--EEEEChHHeeCchhcCCchhc
Confidence 011234567777765432110 000 0000000011 2 233333332 2233331
Q ss_pred ---HHHHHHHHHHHHHHcCCC--CCCCCeEEEecCccCcHhHHHHHHHHhcC--------CCCCcCCccchheehhHHHh
Q 047849 333 ---IERTRAPCKNCLKDANIT--TKDVDEVLLVGGMTRVPKVQEVVSEIFGK--------SPSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 333 ---~~~i~~~i~~~l~~a~~~--~~~i~~VvLvGGss~ip~i~~~l~~~f~~--------~~~~~~~p~~aVA~GAa~~a 399 (651)
...+.++|.++|..+..+ ..-.+.|+|+||+|++|.+.+.|.+.+.. .+....++..++=.||+++|
T Consensus 266 ~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~sila 345 (373)
T smart00268 266 GLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILA 345 (373)
T ss_pred CCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCccccc
Confidence 235677777777765321 12236799999999999999999988831 12234566778888999887
Q ss_pred hh
Q 047849 400 GI 401 (651)
Q Consensus 400 ~~ 401 (651)
..
T Consensus 346 s~ 347 (373)
T smart00268 346 SL 347 (373)
T ss_pred Cc
Confidence 75
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily |
| >PRK13917 plasmid segregation protein ParM; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-11 Score=130.45 Aligned_cols=198 Identities=16% Similarity=0.184 Sum_probs=118.7
Q ss_pred EEEEecCCCCHHH-HHHHHHHHHHc------C------CceEEeecchHHHhhhhccccC--------C-CeEEEEEeCC
Q 047849 193 AVITVPAYFNDAQ-RQATKDAGRIA------G------LDVQRIINEPTAASLSYGMNNK--------E-GLIAVFDLGG 250 (651)
Q Consensus 193 ~VITVPa~f~~~q-r~~l~~Aa~~A------G------l~~~~li~Ep~AAAl~y~~~~~--------~-~~vlVvD~Gg 250 (651)
++...|..+-..+ ++.+++..... | +..+.+++||.+|.+.+..+.. + +.++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 3458998775444 36666554221 1 2346789999999887765421 1 3789999999
Q ss_pred cceEEEEEEEecccccccCCCCccCHHHHHHHHHH-HHHhhhhcCCCceeEEEecceecc----CCCCeeEEEEecHHHH
Q 047849 251 GTFDVSILEISNGVFEDEGIDLSKDRLALQRLREA-AEKAKIELSSTTQTDINLPFITAD----ASGAKHLNITLTRSKF 325 (651)
Q Consensus 251 gT~Dvsv~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~e~~K~~Ls~~~~~~i~i~~~~~~----~~g~~~~~~~itr~~f 325 (651)
||+|++++. ++.+.... . ...+..+..+.+. ++..+.......-....++..... ..+.. .+.+ ++++
T Consensus 195 ~TtD~~v~~--~~~~~~~~-s-~s~~~G~~~~~~~I~~~i~~~~~~~~~~~~~ie~~l~~g~i~~~~~~--~id~-~~~~ 267 (344)
T PRK13917 195 GTTDLDTIQ--NLKRVEEE-S-FVIPKGTIDVYKRIASHISKKEEGASITPYMLEKGLEYGACKLNQKT--VIDF-KDEF 267 (344)
T ss_pred CcEEEEEEe--CcEEcccc-c-ccccchHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHcCcEEeCCCc--eEeh-HHHH
Confidence 999999986 22221100 0 0011222222222 222211110000000011111100 00001 1223 3557
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 326 ETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.++++++++++.+.+...+.. ..+++.|+|+||++++ +++.|++.|+.- ....||..|.|+|...+|..+.+
T Consensus 268 ~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~~-~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 268 YKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSDV-EKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred HHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCCe-EEcCChHHHHHHHHHHHHHHHhc
Confidence 778899999998888887754 3578999999999987 899999999853 56789999999999999986654
|
|
| >PTZ00280 Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.7e-10 Score=122.35 Aligned_cols=273 Identities=14% Similarity=0.097 Sum_probs=154.1
Q ss_pred cEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCC------------cEEEcHhHHhhhhhCCCchhhhhh
Q 047849 58 DIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKG------------ELLVGTPAKRQAVTNPTNTLFGTK 125 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~------------~~~vG~~A~~~~~~~p~~~i~~~K 125 (651)
..|.||+||.++++++.....|.++ +||+|+..+++ ..++|+.|.... .. .
T Consensus 5 ~~iViD~GS~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~----~~--~--- 67 (414)
T PTZ00280 5 PVVVIDNGTGYTKMGYAGNTEPTYI--------IPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAAS----KS--Y--- 67 (414)
T ss_pred CeEEEECCCCceEeeeCCCCCCCEE--------ecceeEEeccccccccccccccCCEEEcchhhhCc----CC--c---
Confidence 4799999999999999977777754 37887764321 234454443210 00 0
Q ss_pred hhhCCCCCChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHH
Q 047849 126 RLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQ 205 (651)
Q Consensus 126 r~lg~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~q 205 (651)
.-.+|+ . +|..... +.+..+++++..... .....-..+++|.|..++..+
T Consensus 68 ---------------~l~~Pi-----~--------~G~I~dw-d~~e~l~~~~~~~~L-~~~p~~~~vllte~~~~~~~~ 117 (414)
T PTZ00280 68 ---------------TLTYPM-----K--------HGIVEDW-DLMEKFWEQCIFKYL-RCEPEEHYFILTEPPMNPPEN 117 (414)
T ss_pred ---------------EEecCc-----c--------CCEeCCH-HHHHHHHHHHHHHhh-ccCCCCCceEEeeCCCCcHHH
Confidence 001111 1 1222222 344455555432211 112223468999999999999
Q ss_pred HHHHHHHHHH-cCCceEEeecchHHHhhhhccccC-----C-CeEEEEEeCCcceEEEEEEEeccccc-------ccCCC
Q 047849 206 RQATKDAGRI-AGLDVQRIINEPTAASLSYGMNNK-----E-GLIAVFDLGGGTFDVSILEISNGVFE-------DEGID 271 (651)
Q Consensus 206 r~~l~~Aa~~-AGl~~~~li~Ep~AAAl~y~~~~~-----~-~~vlVvD~GggT~Dvsv~~~~~~~~~-------~~~~~ 271 (651)
|+.+.+.+-. .+++-+.+..+|.+|++++..... . .+-||||+|.|+++++-+.-+. .+. ..|.+
T Consensus 118 Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~-~l~~~~~~~~~GG~~ 196 (414)
T PTZ00280 118 REYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGY-VIGSSIKHIPLAGRD 196 (414)
T ss_pred HHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCE-EcccceEEecCcHHH
Confidence 9998777654 489999999999999988733211 1 2669999999999998764211 111 11111
Q ss_pred CccCHHH----------HHHHHHHHHHhhhhcCCCcee-------------EEEecceeccCCCCeeEEEEecHHHHH--
Q 047849 272 LSKDRLA----------LQRLREAAEKAKIELSSTTQT-------------DINLPFITADASGAKHLNITLTRSKFE-- 326 (651)
Q Consensus 272 ~~~~~~~----------~~~L~~~~e~~K~~Ls~~~~~-------------~i~i~~~~~~~~g~~~~~~~itr~~fe-- 326 (651)
++..-.. ....+..++.+|+.++..... .........+..++....+.|..+.|.
T Consensus 197 lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~ 276 (414)
T PTZ00280 197 ITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGP 276 (414)
T ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCc
Confidence 1100000 001234577777776532110 000001111111112345677777663
Q ss_pred -HHHHHHH------HHHHHHHHHHHHHcCCC--CCCCCeEEEecCccCcHhHHHHHHHHhc
Q 047849 327 -TLVNNLI------ERTRAPCKNCLKDANIT--TKDVDEVLLVGGMTRVPKVQEVVSEIFG 378 (651)
Q Consensus 327 -~l~~~~~------~~i~~~i~~~l~~a~~~--~~~i~~VvLvGGss~ip~i~~~l~~~f~ 378 (651)
-+++|-+ ..+.++|.+.|.++..+ ..-.+.|+|+||+|.+|.+.+.|++.+.
T Consensus 277 E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 277 EMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred ccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 3444422 14567777777775432 2234679999999999999999998885
|
|
| >TIGR03739 PRTRC_D PRTRC system protein D | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.7e-10 Score=115.99 Aligned_cols=198 Identities=12% Similarity=0.147 Sum_probs=113.8
Q ss_pred CCCeEEEEecCCCCHHHHHHHHHHHHHc---------CCceEEeecchHHHhhhhcccc-----CCCeEEEEEeCCcceE
Q 047849 189 SVSKAVITVPAYFNDAQRQATKDAGRIA---------GLDVQRIINEPTAASLSYGMNN-----KEGLIAVFDLGGGTFD 254 (651)
Q Consensus 189 ~~~~~VITVPa~f~~~qr~~l~~Aa~~A---------Gl~~~~li~Ep~AAAl~y~~~~-----~~~~vlVvD~GggT~D 254 (651)
.+..+|+..|..+...+|+.+++..... -+..+.+++||.+|.+.+..+. ....++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 4567999999999888999998876532 2355789999999988875532 2238999999999999
Q ss_pred EEEEEEecccccccCCCCccCHHHHHHHHHHH-HHhhhhcCCC-ceeEEEecc-eeccCCCCeeE--EEEecHHHHHHHH
Q 047849 255 VSILEISNGVFEDEGIDLSKDRLALQRLREAA-EKAKIELSST-TQTDINLPF-ITADASGAKHL--NITLTRSKFETLV 329 (651)
Q Consensus 255 vsv~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-e~~K~~Ls~~-~~~~i~i~~-~~~~~~g~~~~--~~~itr~~fe~l~ 329 (651)
+.++. ++.+... .. ...+..+..+.+.. +......... ....-.++. +..+. ....+ .+.|+ +..+..
T Consensus 181 ~~~~~--~~~~~~~-~s-~s~~~G~~~~~~~I~~~i~~~~g~~~~~~~~~i~~~l~~g~-~~~~~gk~~di~--~~~~~~ 253 (320)
T TIGR03739 181 WLVAR--GMRLVQK-RS-GSVNGGMSDIYRLLAAEISKDIGTPAYRDIDRIDLALRTGK-QPRIYQKPVDIK--RCLELA 253 (320)
T ss_pred eehcc--CCEEccc-cc-CCchhHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHhCC-ceeecceecCch--HHHHHH
Confidence 98774 2222110 00 01223344443332 2222222221 000001111 11110 00000 12222 222233
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCC-CCCcCCccchheehhHHHh
Q 047849 330 NNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKS-PSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 330 ~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~-~~~~~~p~~aVA~GAa~~a 399 (651)
+..++++...+.+.+ + ...+++.|+|+||++. .+++.|++.|+.. +....||..|.|+|-..+|
T Consensus 254 ~~~~~~~v~~i~~~~---~-~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 254 ETVAQQAVSTMMTWI---G-APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHHHHHhc---c-cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcHHHHHHHHHHhh
Confidence 334444433333333 1 2346889999999986 6789999999763 3456899999999987765
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region. |
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=99.14 E-value=8e-10 Score=117.96 Aligned_cols=172 Identities=17% Similarity=0.167 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHcCCceEEeecchHHHhhhhc-----cccC--CC-eEEEEEeCCcceEEEEEEEeccccc----ccCC
Q 047849 203 DAQRQATKDAGRIAGLDVQRIINEPTAASLSYG-----MNNK--EG-LIAVFDLGGGTFDVSILEISNGVFE----DEGI 270 (651)
Q Consensus 203 ~~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~-----~~~~--~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~ 270 (651)
....+.+.++++.||+++..+..+|.|.+-.+. .... .. +++++|+|++++++++++-+.-.|. ..+.
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~~r~i~~G~~ 221 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLFTREVPFGTR 221 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEEEEEeechHH
Confidence 456788899999999999999999999986663 2211 22 4999999999999999974433332 1111
Q ss_pred CCccCH-HHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHc--
Q 047849 271 DLSKDR-LALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDA-- 347 (651)
Q Consensus 271 ~~~~~~-~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a-- 347 (651)
++..+- ..+..-...||+.|...+... + .-.+++++.++++...|.+.|+-.
T Consensus 222 ~i~~~i~~~~~~~~~~Ae~~k~~~~~~~-----------------~--------~~~~~~~~~~~~l~~eI~~~l~~~~~ 276 (348)
T TIGR01175 222 QLTSELSRAYGLNPEEAGEAKQQGGLPL-----------------L--------YDPEVLRRFKGELVDEIRRSLQFFTA 276 (348)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhcCCCCC-----------------c--------hhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 111110 111223467888887532111 0 012456677777777777777532
Q ss_pred CCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCC-------------------cCCccchheehhHHHh
Q 047849 348 NITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSK-------------------GVNPDEAVALGAAIQG 399 (651)
Q Consensus 348 ~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~-------------------~~~p~~aVA~GAa~~a 399 (651)
......++.|+|+||+++++.+.+.+++.|+.++.. ..+|..++|.|+|+++
T Consensus 277 ~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~a~Glalr~ 347 (348)
T TIGR01175 277 QSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVDAGRLAVDAPALMTALGLALRG 347 (348)
T ss_pred CCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcccCccCCHHHHHhhhHHHHHHhhHhhcC
Confidence 223446899999999999999999999999854321 1345667788887764
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
| >PTZ00452 actin; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.4e-09 Score=112.25 Aligned_cols=293 Identities=15% Similarity=0.120 Sum_probs=164.1
Q ss_pred CCCcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCC---------cEEEcHhHHhhhhhCCCchhhhhh
Q 047849 55 AGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKG---------ELLVGTPAKRQAVTNPTNTLFGTK 125 (651)
Q Consensus 55 ~~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~---------~~~vG~~A~~~~~~~p~~~i~~~K 125 (651)
.+...|-||+|+.++++++..+..|.++ +||+|...++. ..++|+.|.... ....+
T Consensus 3 ~~~~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~------~~~~l- 67 (375)
T PTZ00452 3 AQYPAVVIDNGSGYCKIGIAGDDAPTSC--------FPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKR------GVLAI- 67 (375)
T ss_pred CCCCEEEEECCCCeEEEeeCCCCCcCEE--------ecceeEEECCccccccccccceEEChhhhccc------cCcEE-
Confidence 3445789999999999999988888754 37777664321 234454442100 00000
Q ss_pred hhhCCCCCChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHH
Q 047849 126 RLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQ 205 (651)
Q Consensus 126 r~lg~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~q 205 (651)
..|+ . +|..... +.+..+++|+....- .....-..+++|-|...+..+
T Consensus 68 -----------------~~Pi-----~--------~G~I~dw-d~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~~ 115 (375)
T PTZ00452 68 -----------------KEPI-----Q--------NGIINSW-DDIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKFN 115 (375)
T ss_pred -----------------cccC-----c--------CCEEcCH-HHHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHHH
Confidence 0010 1 1122222 233345555432211 122233568999999999999
Q ss_pred HHHHHHHH-HHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEEEe----cccc--cccCCCCccCHHH
Q 047849 206 RQATKDAG-RIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILEIS----NGVF--EDEGIDLSKDRLA 278 (651)
Q Consensus 206 r~~l~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~~~----~~~~--~~~~~~~~~~~~~ 278 (651)
|+.+.+.. +..+++.+.+.+.|.+++++++.. +-||+|+|.+.++++-+.-+ .... ...|.+++..-..
T Consensus 116 Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~----tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~ 191 (375)
T PTZ00452 116 RERMTQIMFETFNTPCLYISNEAVLSLYTSGKT----IGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQ 191 (375)
T ss_pred HHHHHHHHhhccCCceEEEechHHHHHHHCCCc----eeeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHH
Confidence 98887765 556888899999999999887643 56999999999999866411 1100 0111111110000
Q ss_pred HH----------HHHHHHHHhhhhcCCCcee---EE-------EecceeccCCCCeeEEEEecHHHH---HHHHHHHH--
Q 047849 279 LQ----------RLREAAEKAKIELSSTTQT---DI-------NLPFITADASGAKHLNITLTRSKF---ETLVNNLI-- 333 (651)
Q Consensus 279 ~~----------~L~~~~e~~K~~Ls~~~~~---~i-------~i~~~~~~~~g~~~~~~~itr~~f---e~l~~~~~-- 333 (651)
+. .-...++.+|+.++-.... .. .....+.-.+ .-.+.+..+.| |-+++|-+
T Consensus 192 lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPD---g~~i~l~~er~~~~E~LF~P~~~g 268 (375)
T PTZ00452 192 ILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPD---GNILTIKSQKFRCSEILFQPKLIG 268 (375)
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCC---CCEEEeehHHhcCcccccChhhcC
Confidence 00 0022356666665422100 00 0000011111 12456666665 23334432
Q ss_pred ---HHHHHHHHHHHHHcCCC--CCCCCeEEEecCccCcHhHHHHHHHHhcC----C----CCCcCCccchheehhHHHhh
Q 047849 334 ---ERTRAPCKNCLKDANIT--TKDVDEVLLVGGMTRVPKVQEVVSEIFGK----S----PSKGVNPDEAVALGAAIQGG 400 (651)
Q Consensus 334 ---~~i~~~i~~~l~~a~~~--~~~i~~VvLvGGss~ip~i~~~l~~~f~~----~----~~~~~~p~~aVA~GAa~~a~ 400 (651)
..+.++|.+.+..+..+ ..-.+.|+|+||+|.+|.+.+.|++.+.. . +..+.++..++=+|++++|.
T Consensus 269 ~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 269 LEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred CCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 23566777777765432 23347899999999999999999988731 1 22344666788889999887
Q ss_pred h
Q 047849 401 I 401 (651)
Q Consensus 401 ~ 401 (651)
.
T Consensus 349 l 349 (375)
T PTZ00452 349 L 349 (375)
T ss_pred c
Confidence 4
|
|
| >PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.5e-09 Score=114.11 Aligned_cols=284 Identities=18% Similarity=0.229 Sum_probs=160.5
Q ss_pred CcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCC----cEEEcHhHHhhhhhCCCchhhhhhhhhCCCC
Q 047849 57 NDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKG----ELLVGTPAKRQAVTNPTNTLFGTKRLIGRKF 132 (651)
Q Consensus 57 ~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~----~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~ 132 (651)
..+|-||+|+.++++++..+..|..+ +||+++...+. ..++|..+...
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~~-------------------- 55 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALSP-------------------- 55 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHHT--------------------
T ss_pred CCEEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeecccccc--------------------
Confidence 45789999999999999876667654 48888764433 35677663220
Q ss_pred CChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHH
Q 047849 133 DDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDA 212 (651)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~A 212 (651)
...+.+.. + + .++.... -+....+++++..... .....-..++++.|..++..+|+.+.+.
T Consensus 56 ----------~~~~~~~~-p-----~-~~g~i~~-~~~~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~~l~e~ 116 (393)
T PF00022_consen 56 ----------RSNLELRS-P-----I-ENGVIVD-WDALEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQREKLAEI 116 (393)
T ss_dssp ----------GTGEEEEE-S-----E-ETTEESS-HHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHHHHHH
T ss_pred ----------hhheeeee-e-----c-ccccccc-cccccccccccccccc-ccccccceeeeeccccCCchhhhhhhhh
Confidence 00011100 0 0 1122222 2344455555544321 1122335799999999999999887766
Q ss_pred H-HHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEEEeccccc----------------------ccC
Q 047849 213 G-RIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFE----------------------DEG 269 (651)
Q Consensus 213 a-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~----------------------~~~ 269 (651)
+ +..|++.+.++++|.+|+++++.. +-||||+|.+.+.++-+. ++-.+. ..+
T Consensus 117 lfE~~~~~~v~~~~~~~~a~~~~g~~----tglVVD~G~~~t~v~pV~-dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~ 191 (393)
T PF00022_consen 117 LFEKFGVPSVYFIPSPLLALYASGRT----TGLVVDIGYSSTSVVPVV-DGYVLPHSIKRSPIGGDDLTEYLKELLKERN 191 (393)
T ss_dssp HHHTS--SEEEEEEHHHHHHHHTTBS----SEEEEEESSS-EEEEEEE-TTEE-GGGBEEES-SHHHHHHHHHHHHHHT-
T ss_pred hhcccccceeeeeecccccccccccc----cccccccceeeeeeeeee-eccccccccccccccHHHHHHHHHHHHHhhc
Confidence 4 567999999999999999888755 569999999999998764 111110 111
Q ss_pred CCCc------------cCHHHHHHHHHHHHHhhhhcCC---------------CceeEEEecceeccCCCCeeEEEEecH
Q 047849 270 IDLS------------KDRLALQRLREAAEKAKIELSS---------------TTQTDINLPFITADASGAKHLNITLTR 322 (651)
Q Consensus 270 ~~~~------------~~~~~~~~L~~~~e~~K~~Ls~---------------~~~~~i~i~~~~~~~~g~~~~~~~itr 322 (651)
..+. ........-...++.+|+.+.. .....+.++ +| ..+.+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP------dg---~~i~~~~ 262 (393)
T PF00022_consen 192 IQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP------DG---QTIILGK 262 (393)
T ss_dssp SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T------TS---SEEEEST
T ss_pred cccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc------cc---ccccccc
Confidence 1100 0000001112223344433311 111122221 11 2556665
Q ss_pred HHHHHHHHHHHH----------------HHHHHHHHHHHHcCCCCC--CCCeEEEecCccCcHhHHHHHHHHhcC-----
Q 047849 323 SKFETLVNNLIE----------------RTRAPCKNCLKDANITTK--DVDEVLLVGGMTRVPKVQEVVSEIFGK----- 379 (651)
Q Consensus 323 ~~fe~l~~~~~~----------------~i~~~i~~~l~~a~~~~~--~i~~VvLvGGss~ip~i~~~l~~~f~~----- 379 (651)
+.| .+.+.+++ .+.++|.+++..+..+.. -.+.|+|+||+|++|.+.+.|.+.+..
T Consensus 263 er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~ 341 (393)
T PF00022_consen 263 ERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSS 341 (393)
T ss_dssp HHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTT
T ss_pred ccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhcc
Confidence 554 23333322 467778888877653321 147899999999999999999988742
Q ss_pred -C--CCCcC-CccchheehhHHHhhhc
Q 047849 380 -S--PSKGV-NPDEAVALGAAIQGGIL 402 (651)
Q Consensus 380 -~--~~~~~-~p~~aVA~GAa~~a~~l 402 (651)
. +.... +|..++=.||+++|..-
T Consensus 342 ~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 342 TKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp STEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred ccceeccCchhhhhcccccceeeeccc
Confidence 1 22334 78999999999998853
|
These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B .... |
| >PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-10 Score=121.34 Aligned_cols=166 Identities=18% Similarity=0.198 Sum_probs=82.8
Q ss_pred ceEEeecchHHHhhhhccccCC-CeEEEEEeCCcceEEEEEEEeccccc-ccC-CCCccCHHHHHHHHHHHHHhhhhcCC
Q 047849 219 DVQRIINEPTAASLSYGMNNKE-GLIAVFDLGGGTFDVSILEISNGVFE-DEG-IDLSKDRLALQRLREAAEKAKIELSS 295 (651)
Q Consensus 219 ~~~~li~Ep~AAAl~y~~~~~~-~~vlVvD~GggT~Dvsv~~~~~~~~~-~~~-~~~~~~~~~~~~L~~~~e~~K~~Ls~ 295 (651)
..+.+++||.||.+.+..+-.+ +.+||+|+||+|+|++++.-.-.... ..+ .++ .-......+.+...+.+..++.
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~-Gvs~~~~~I~~~l~~~~~~~s~ 219 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEI-GVSDLYDAIAQALRSAGIDTSE 219 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTS-STHHHHHHHHHHTT--SBHHHH
T ss_pred eeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCch-hHHHHHHHHHHHHHHhcCCCcH
Confidence 4578999999999988766433 48999999999999999862100111 111 111 0111112222211111111110
Q ss_pred CceeEEEecceeccCCCCeeEEEEe----cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHH
Q 047849 296 TTQTDINLPFITADASGAKHLNITL----TRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQE 371 (651)
Q Consensus 296 ~~~~~i~i~~~~~~~~g~~~~~~~i----tr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~ 371 (651)
. .++.+........-+...+ ..+++.+.++..++++.+.|.+.+.+ ..+++.|+||||++ ..+.+
T Consensus 220 ~-----~~~~ii~~~~~~~~~~~~i~~~~~~~~v~~~i~~~~~~l~~~i~~~~~~----~~~~~~I~~vGGGA--~ll~~ 288 (318)
T PF06406_consen 220 L-----QIDDIIRNRKDKGYLRQVINDEDVIDDVSEVIEEAVEELINRILRELGD----FSDIDRIFFVGGGA--ILLKD 288 (318)
T ss_dssp H-----HHHHHHHTTT-HHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S-S-SEEEEESTTH--HHHHH
T ss_pred H-----HHHHHHHhhhccceecccccchhhHHHHHHHHHHHHHHHHHHHHHHHhh----hccCCeEEEECCcH--HHHHH
Confidence 0 0000000000000000000 12334444444444444444444432 35688999999998 57889
Q ss_pred HHHHHhc---CCCCCcCCccchheehhH
Q 047849 372 VVSEIFG---KSPSKGVNPDEAVALGAA 396 (651)
Q Consensus 372 ~l~~~f~---~~~~~~~~p~~aVA~GAa 396 (651)
.|++.|+ ..+....||+.|-|+|-+
T Consensus 289 ~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 289 AIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred HHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 9999987 346678899999999965
|
They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A. |
| >PTZ00281 actin; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.6e-09 Score=112.35 Aligned_cols=203 Identities=16% Similarity=0.175 Sum_probs=121.5
Q ss_pred CCeEEEEecCCCCHHHHHHHHHH-HHHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEEEeccccc--
Q 047849 190 VSKAVITVPAYFNDAQRQATKDA-GRIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFE-- 266 (651)
Q Consensus 190 ~~~~VITVPa~f~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~-- 266 (651)
-..+++|-|..++..+|+.+.+. .+..+++-+.+...|.+++++++.. +-+|||+|.+.+.++-+.-+-....
T Consensus 101 ~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~----tglVVDiG~~~t~v~PV~dG~~~~~~~ 176 (376)
T PTZ00281 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT----TGIVMDSGDGVSHTVPIYEGYALPHAI 176 (376)
T ss_pred cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCc----eEEEEECCCceEEEEEEEecccchhhe
Confidence 35688999999999999988775 5667889999999999999887642 6699999999999875532111100
Q ss_pred ----ccCCCCccCHHH-H---------HHHHHHHHHhhhhcCCCce------------eEEEecceeccCCCCeeEEEEe
Q 047849 267 ----DEGIDLSKDRLA-L---------QRLREAAEKAKIELSSTTQ------------TDINLPFITADASGAKHLNITL 320 (651)
Q Consensus 267 ----~~~~~~~~~~~~-~---------~~L~~~~e~~K~~Ls~~~~------------~~i~i~~~~~~~~g~~~~~~~i 320 (651)
..|.+++..-+. + ..-...++.+|+.+..... ......+... +| ..+.+
T Consensus 177 ~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LP--dg---~~i~i 251 (376)
T PTZ00281 177 LRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELP--DG---QVITI 251 (376)
T ss_pred eeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECC--CC---CEEEe
Confidence 011111000000 0 0012346677777542110 0000011111 11 23555
Q ss_pred cHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCCeEEEecCccCcHhHHHHHHHHhcC----C----CC
Q 047849 321 TRSKF---ETLVNNLI-----ERTRAPCKNCLKDANIT--TKDVDEVLLVGGMTRVPKVQEVVSEIFGK----S----PS 382 (651)
Q Consensus 321 tr~~f---e~l~~~~~-----~~i~~~i~~~l~~a~~~--~~~i~~VvLvGGss~ip~i~~~l~~~f~~----~----~~ 382 (651)
..+.| |-+++|-+ ..+.++|.+.+..+..+ ..-.+.|+|+||+|.+|.+.+.|+..+.. . +.
T Consensus 252 ~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~ 331 (376)
T PTZ00281 252 GNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKII 331 (376)
T ss_pred eHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEe
Confidence 55544 34444422 14556677777665332 12236899999999999999999888741 1 22
Q ss_pred CcCCccchheehhHHHhhh
Q 047849 383 KGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 383 ~~~~p~~aVA~GAa~~a~~ 401 (651)
.+.++..++=+|++++|..
T Consensus 332 ~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 332 APPERKYSVWIGGSILASL 350 (376)
T ss_pred cCCCCceeEEECcccccCc
Confidence 3456778889999998874
|
|
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.9e-09 Score=110.77 Aligned_cols=196 Identities=20% Similarity=0.237 Sum_probs=112.2
Q ss_pred HHHHHHHhhCCCCCeEEEEec---CC-------------CCHHHHHHHHHHHHHcCCceEEeecchHHHhhhhccc----
Q 047849 178 MKETAESYLGKSVSKAVITVP---AY-------------FNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMN---- 237 (651)
Q Consensus 178 l~~~a~~~~~~~~~~~VITVP---a~-------------f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~---- 237 (651)
+.-.+++++..++.++++-.= .. ......+...++++.|||++..+--+|.|.+-.|...
T Consensus 94 I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa~k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~ 173 (340)
T PF11104_consen 94 IRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAAPKEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQL 173 (340)
T ss_dssp HHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEEEHHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTS
T ss_pred HHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEEcHHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhC
Confidence 455677787766665443211 00 0134467778999999999988877888877665442
Q ss_pred c-C-C-CeEEEEEeCCcceEEEEEEEecccccccCCCCccCH------HHHHHHHHHHHHhhhhcCCCceeEEEecceec
Q 047849 238 N-K-E-GLIAVFDLGGGTFDVSILEISNGVFEDEGIDLSKDR------LALQRLREAAEKAKIELSSTTQTDINLPFITA 308 (651)
Q Consensus 238 ~-~-~-~~vlVvD~GggT~Dvsv~~~~~~~~~~~~~~~~~~~------~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~ 308 (651)
. . . +.++++|+|+.++.+.+++-+.-.|... +.+..+. ..+..-..++|+.|..-+-..
T Consensus 174 ~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f~R~-i~~G~~~l~~~i~~~~~i~~~~Ae~~k~~~~l~~----------- 241 (340)
T PF11104_consen 174 PDEEDAETVALVDIGASSTTVIIFQNGKPIFSRS-IPIGGNDLTEAIARELGIDFEEAEELKRSGGLPE----------- 241 (340)
T ss_dssp T----T-EEEEEEE-SS-EEEEEEETTEEEEEEE-ES-SHHHHHHHHHHHTT--HHHHHHHHHHT---------------
T ss_pred CcccccceEEEEEecCCeEEEEEEECCEEEEEEE-EeeCHHHHHHHHHHhcCCCHHHHHHHHhcCCCCc-----------
Confidence 1 1 1 3799999999999999987444333311 1111110 111122466777776421100
Q ss_pred cCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCC---
Q 047849 309 DASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKD--ANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSK--- 383 (651)
Q Consensus 309 ~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~--a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~--- 383 (651)
+...+.+++.++++...|++.++- .......|+.|+|+||++++|.|.+.|++.++.++..
T Consensus 242 --------------~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p 307 (340)
T PF11104_consen 242 --------------EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINP 307 (340)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--G
T ss_pred --------------chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcCh
Confidence 223456677777777777777662 2334568999999999999999999999999854321
Q ss_pred ------c----------CCccchheehhHHHh
Q 047849 384 ------G----------VNPDEAVALGAAIQG 399 (651)
Q Consensus 384 ------~----------~~p~~aVA~GAa~~a 399 (651)
+ ..|..++|.|.|+.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 308 FKNIKLDPKINSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp GGGSB--TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCccCcccChhhhhhhhhHHHHHHHHhhcC
Confidence 1 136778999999864
|
|
| >PTZ00004 actin-2; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.4e-08 Score=105.60 Aligned_cols=287 Identities=14% Similarity=0.136 Sum_probs=162.1
Q ss_pred CcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCC---------cEEEcHhHHhhhhhCCCchhhhhhhh
Q 047849 57 NDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKG---------ELLVGTPAKRQAVTNPTNTLFGTKRL 127 (651)
Q Consensus 57 ~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~---------~~~vG~~A~~~~~~~p~~~i~~~Kr~ 127 (651)
...|-||+||.++++++..+..|.++ +||+++..++. ..++|+.+.... .. ..+
T Consensus 6 ~~~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~-~~l--- 68 (378)
T PTZ00004 6 TNAAVVDNGSGMVKAGFAGDDAPRCV--------FPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKR-----GI-LTL--- 68 (378)
T ss_pred CCeEEEECCCCeEEEeeCCCCCCCEE--------ccceeEEecccccccCcCCCceEECchhhccc-----cc-ceE---
Confidence 34689999999999999877777654 37777663321 234555443210 00 000
Q ss_pred hCCCCCChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhC--CCCCeEEEEecCCCCHHH
Q 047849 128 IGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLG--KSVSKAVITVPAYFNDAQ 205 (651)
Q Consensus 128 lg~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~--~~~~~~VITVPa~f~~~q 205 (651)
..|+ . +|..... +....+++++.. ..++ .....+++|-|..++..+
T Consensus 69 ---------------~~Pi-----~--------~G~i~d~-d~~e~i~~~~~~---~~l~v~~~~~pvllte~~~~~~~~ 116 (378)
T PTZ00004 69 ---------------KYPI-----E--------HGIVTNW-DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKAN 116 (378)
T ss_pred ---------------cccC-----c--------CCEEcCH-HHHHHHHHHHHH---hhcccCCccCcceeecCCCCcHHH
Confidence 0111 1 1122222 334445555322 2232 233468899999999999
Q ss_pred HHHHHHHH-HHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEEEec----ccc--cccCCCCccCHHH
Q 047849 206 RQATKDAG-RIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILEISN----GVF--EDEGIDLSKDRLA 278 (651)
Q Consensus 206 r~~l~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~~~~----~~~--~~~~~~~~~~~~~ 278 (651)
|+.+.+.+ +..|++.+.++++|.+|+++++. .+-+|+|+|.+.++++-+.-+- ... ...|.+++..-+.
T Consensus 117 r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~----~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~ 192 (378)
T PTZ00004 117 REKMTQIMFETHNVPAMYVAIQAVLSLYASGR----TTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMK 192 (378)
T ss_pred HHHHHHHHHhhcCCceEEeeccHHHHHHhcCC----ceEEEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHH
Confidence 98776654 56799999999999999988764 2669999999999998764110 000 0111111000000
Q ss_pred ----------HHHHHHHHHHhhhhcCCCce-------------eEEEecceeccCCCCeeEEEEecHHHH---HHHHHHH
Q 047849 279 ----------LQRLREAAEKAKIELSSTTQ-------------TDINLPFITADASGAKHLNITLTRSKF---ETLVNNL 332 (651)
Q Consensus 279 ----------~~~L~~~~e~~K~~Ls~~~~-------------~~i~i~~~~~~~~g~~~~~~~itr~~f---e~l~~~~ 332 (651)
...-...++..|+.+..... ......+... +| -.+.+..+.| |-+++|-
T Consensus 193 lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lP--dg---~~i~l~~er~~~~E~LF~P~ 267 (378)
T PTZ00004 193 ILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELP--DG---TIITVGSERFRCPEALFQPS 267 (378)
T ss_pred HHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECC--CC---CEEEEcHHHeeCcccccChh
Confidence 00012335666666532110 0000011111 11 2345555554 2344553
Q ss_pred ------HHHHHHHHHHHHHHcCCC--CCCCCeEEEecCccCcHhHHHHHHHHhcC----C----CCCcCCccchheehhH
Q 047849 333 ------IERTRAPCKNCLKDANIT--TKDVDEVLLVGGMTRVPKVQEVVSEIFGK----S----PSKGVNPDEAVALGAA 396 (651)
Q Consensus 333 ------~~~i~~~i~~~l~~a~~~--~~~i~~VvLvGGss~ip~i~~~l~~~f~~----~----~~~~~~p~~aVA~GAa 396 (651)
...+.++|.+++.++..+ ..-...|+|+||+|.+|.+.+.|...+.. . +....++..++=+||+
T Consensus 268 ~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggs 347 (378)
T PTZ00004 268 LIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGS 347 (378)
T ss_pred hcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcc
Confidence 234566777777765432 22346899999999999999999988741 1 2234567788888999
Q ss_pred HHhhh
Q 047849 397 IQGGI 401 (651)
Q Consensus 397 ~~a~~ 401 (651)
++|..
T Consensus 348 ilas~ 352 (378)
T PTZ00004 348 ILSSL 352 (378)
T ss_pred cccCc
Confidence 88764
|
|
| >PTZ00466 actin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.1e-08 Score=104.25 Aligned_cols=203 Identities=14% Similarity=0.117 Sum_probs=121.8
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHH-HHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEEEec----cc
Q 047849 190 VSKAVITVPAYFNDAQRQATKDAG-RIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILEISN----GV 264 (651)
Q Consensus 190 ~~~~VITVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~~~~----~~ 264 (651)
-..+++|-|..++..+|+.+.+.+ +..+++.+.+.+.|.+|+++++.. +-+|||+|.+.+.++-+.-+- ..
T Consensus 106 ~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~----tglVVD~G~~~t~v~PV~~G~~~~~~~ 181 (380)
T PTZ00466 106 EHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKT----NGTVLDCGDGVCHCVSIYEGYSITNTI 181 (380)
T ss_pred cCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCc----eEEEEeCCCCceEEEEEECCEEeecce
Confidence 346889999999999999886654 557888899999999999887642 679999999999997654110 00
Q ss_pred c--cccCCCCccCHHH----------HHHHHHHHHHhhhhcCCCce-----------eEEEecceeccCCCCeeEEEEec
Q 047849 265 F--EDEGIDLSKDRLA----------LQRLREAAEKAKIELSSTTQ-----------TDINLPFITADASGAKHLNITLT 321 (651)
Q Consensus 265 ~--~~~~~~~~~~~~~----------~~~L~~~~e~~K~~Ls~~~~-----------~~i~i~~~~~~~~g~~~~~~~it 321 (651)
. ...|.+++..-+. ...-+..++.+|+.+.-... ......+... +...+.+.
T Consensus 182 ~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LP-----dg~~i~l~ 256 (380)
T PTZ00466 182 TRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILP-----DGSQILIG 256 (380)
T ss_pred eEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhccccccceeEECC-----CCcEEEEc
Confidence 0 0111111110000 00112345666766532100 0000111111 11245566
Q ss_pred HHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCCeEEEecCccCcHhHHHHHHHHhcC----C----CCC
Q 047849 322 RSKF---ETLVNNLI-----ERTRAPCKNCLKDANIT--TKDVDEVLLVGGMTRVPKVQEVVSEIFGK----S----PSK 383 (651)
Q Consensus 322 r~~f---e~l~~~~~-----~~i~~~i~~~l~~a~~~--~~~i~~VvLvGGss~ip~i~~~l~~~f~~----~----~~~ 383 (651)
.+.| |-+++|-+ ..+.++|.+.+.++..+ ..-...|+|+||+|.+|.+.+.|+..+.. . +..
T Consensus 257 ~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~ 336 (380)
T PTZ00466 257 SERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISA 336 (380)
T ss_pred hHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEec
Confidence 6655 33444421 13556666777665432 22347899999999999999999988732 1 223
Q ss_pred cCCccchheehhHHHhhh
Q 047849 384 GVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 384 ~~~p~~aVA~GAa~~a~~ 401 (651)
+.++..++=+|++++|..
T Consensus 337 ~~~r~~~aW~GgSilasl 354 (380)
T PTZ00466 337 PPERKFSTFIGGSILASL 354 (380)
T ss_pred CCCCceeEEECchhhcCc
Confidence 456777888899998874
|
|
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.7e-07 Score=91.33 Aligned_cols=270 Identities=19% Similarity=0.255 Sum_probs=151.0
Q ss_pred cEEEEEcCCceEEEEEEeC-CceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChH
Q 047849 58 DIIGIDLGTTNSCVALMEG-KNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQ 136 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~-~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~ 136 (651)
..||||+|++..+++.... |+.--+. ......+|--+. .+| ...+++.+...+|+++.+.--.
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~~~kLe-~y~~~~lp~~iv--~dg-----------~ivd~~av~~~Lk~ala~~gi~-- 74 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGNRYKLE-KYASEPLPENIV--ADG-----------KIVDYDAVASALKRALAKLGIK-- 74 (354)
T ss_pred ceeeEeeccceEEEEEEcccCCceeee-eeeecccCcccc--ccC-----------CcccHHHHHHHHHHHHHhcCcc--
Confidence 5899999999999987763 2221111 111122222111 121 2345666777778877543211
Q ss_pred HHHHhhcceeEEEECCCCCeEEEeCCeeeC-hhhHHHHHHHH-HHHHHHHhhCCCCC-----eEEEEecCCCC-------
Q 047849 137 TQKEMQMVSYKIVRAPNGDAWVEANGQQYS-PSQIGAFVLTK-MKETAESYLGKSVS-----KAVITVPAYFN------- 202 (651)
Q Consensus 137 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s-~eev~a~~L~~-l~~~a~~~~~~~~~-----~~VITVPa~f~------- 202 (651)
.+......| +...+. +.++ |.++...=|+. +...|..++..++. -.+++-++.=.
T Consensus 75 ~k~aa~AVP--------~s~ait---k~i~vp~~lde~eL~~~V~~ea~~y~PyP~EEv~lDy~vlg~~~~~~e~v~Vll 143 (354)
T COG4972 75 SKNAATAVP--------GSAAIT---KTIPVPDELDEKELEDQVESEASRYIPYPLEEVNLDYQVLGPSANEPEKVQVLL 143 (354)
T ss_pred hhhhhhhcC--------ccceee---EEeccCCcccHHHHHHHHHHHHhhcCCCchhhcccceEEeccccCCCccEEEEE
Confidence 011111111 111111 1111 22233322332 33456666664443 24555554443
Q ss_pred ----HHHHHHHHHHHHHcCCceEEeecchHHHhhhhccc-----cCCC--eEEEEEeCCcceEEEEEEEecccccccCCC
Q 047849 203 ----DAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMN-----NKEG--LIAVFDLGGGTFDVSILEISNGVFEDEGID 271 (651)
Q Consensus 203 ----~~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~-----~~~~--~vlVvD~GggT~Dvsv~~~~~~~~~~~~~~ 271 (651)
.+......+|.+.|||....+--|.-|.--+|..- .... +++|+|+|+..+.+.++.-+...|.+. ..
T Consensus 144 ~AtrkE~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly~r~-~~ 222 (354)
T COG4972 144 VATRKEVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILYTRE-VP 222 (354)
T ss_pred EEeehhhhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeeeEee-cc
Confidence 22345567899999999988888888887777622 1222 689999999999999998555555421 11
Q ss_pred CccC------HHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 047849 272 LSKD------RLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLK 345 (651)
Q Consensus 272 ~~~~------~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~ 345 (651)
+..+ .+.+.--...++.+|....-.. +.-.++..++++.+.+.|++.|+
T Consensus 223 ~g~~Qlt~~i~r~~~L~~~~a~~~k~~~~~P~-------------------------~y~~~vl~~f~~~l~~ei~Rslq 277 (354)
T COG4972 223 VGTDQLTQEIQRAYSLTEEKAEEIKRGGTLPT-------------------------DYGSEVLRPFLGELTQEIRRSLQ 277 (354)
T ss_pred CcHHHHHHHHHHHhCCChhHhHHHHhCCCCCC-------------------------chhHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1111112345666665443221 12245666666666666666665
Q ss_pred H--cCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCC
Q 047849 346 D--ANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKS 380 (651)
Q Consensus 346 ~--a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~ 380 (651)
- +.-...+|+.|+|.||++.+-.+.+++.+.++.+
T Consensus 278 fy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~ 314 (354)
T COG4972 278 FYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIP 314 (354)
T ss_pred HHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCC
Confidence 3 2224568999999999999999999999998754
|
|
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.7e-07 Score=93.71 Aligned_cols=72 Identities=19% Similarity=0.346 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCC-CcCCccchheehhHHHhhh
Q 047849 326 ETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPS-KGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~-~~~~p~~aVA~GAa~~a~~ 401 (651)
++++..+...+...+...+++.++. +.|+|+||.++.|.+++.+++.++.++. .+.+|..+-|+|||++|..
T Consensus 216 edI~aGl~~sia~rv~~~~~~~~i~----~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 216 NMVIAAYCQAMAERVVSLLERIGVE----EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCC----CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 3444455555554444444443332 3699999999999999999999998876 5778999999999999864
|
Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene. |
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-07 Score=94.76 Aligned_cols=69 Identities=16% Similarity=0.303 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-eEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHH
Q 047849 325 FETLVNNLIERTRAPCKNCLKDANITTKDVD-EVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 398 (651)
Q Consensus 325 fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~-~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~ 398 (651)
.++++..+++.+...+.+.+...+ ++ .|+|+||.++.|++.+.+++.++.++..+.+|..+.|+|||++
T Consensus 179 ~~di~~~~~~~va~~i~~~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 179 KEDILAGVYESIAERVAEMLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 356777777777777777665543 44 7999999999999999999999999999999999999999973
|
This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. |
| >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.4e-07 Score=98.90 Aligned_cols=147 Identities=15% Similarity=0.173 Sum_probs=86.0
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHH------------cCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEE
Q 047849 191 SKAVITVPAYFNDAQRQATKDAGRI------------AGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSIL 258 (651)
Q Consensus 191 ~~~VITVPa~f~~~qr~~l~~Aa~~------------AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~ 258 (651)
.-.+||.+... ++.++++++. ||+++..++. |.|++.+...+.++..++++|+||||++++++
T Consensus 89 ~ahIITg~~~~----~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLseEke~gVa~IDIGgGTT~iaVf 163 (475)
T PRK10719 89 GAVIITGETAR----KENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSEERNTRVLNIDIGGGTANYALF 163 (475)
T ss_pred cEEEEEechhH----HHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhhhccCceEEEEeCCCceEEEEE
Confidence 45788887654 5556666665 6777666666 99999877755333399999999999999999
Q ss_pred EEeccccc----ccCCCCccCH--------HHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHH
Q 047849 259 EISNGVFE----DEGIDLSKDR--------LALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFE 326 (651)
Q Consensus 259 ~~~~~~~~----~~~~~~~~~~--------~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe 326 (651)
+-+.-.+. -.|..++.|. ...+++.+. .-.. ...--.++.+++.
T Consensus 164 ~~G~l~~T~~l~vGG~~IT~D~~~~i~yis~~~~~l~~~---~~~~---------------------~~~G~~~~~~~L~ 219 (475)
T PRK10719 164 DAGKVIDTACLNVGGRLIETDSQGRVTYISPPGQMILDE---LGLA---------------------ITDGRSLTGEQLQ 219 (475)
T ss_pred ECCEEEEEEEEecccceEEECCCCCEEEEChHHHHHHHH---cCCC---------------------ccccccCCHHHHH
Confidence 74432222 2222222221 111222211 1110 1122346667788
Q ss_pred HHHHHHHHHHHHHHHHH-------HHH-cCCC-CCCCCeEEEecCccCc
Q 047849 327 TLVNNLIERTRAPCKNC-------LKD-ANIT-TKDVDEVLLVGGMTRV 366 (651)
Q Consensus 327 ~l~~~~~~~i~~~i~~~-------l~~-a~~~-~~~i~~VvLvGGss~i 366 (651)
.+|+-..+-+.+.+... |-. ..+. ...++.|.+.||-+..
T Consensus 220 ~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad~ 268 (475)
T PRK10719 220 QVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGVGDC 268 (475)
T ss_pred HHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecchHhh
Confidence 87777666666655411 111 1222 3568999999998764
|
|
| >PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.6e-06 Score=97.93 Aligned_cols=91 Identities=19% Similarity=0.235 Sum_probs=68.4
Q ss_pred eeEEEEecHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCC--------
Q 047849 314 KHLNITLTRSKFETLVN---NLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPS-------- 382 (651)
Q Consensus 314 ~~~~~~itr~~fe~l~~---~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~-------- 382 (651)
.+..+.|+..++...+- -.+..++..+-+++.. .+.|.++|+|--||+|.||..+++..+.++.
T Consensus 729 ldv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~-----Y~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y 803 (1002)
T PF07520_consen 729 LDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHH-----YDCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGY 803 (1002)
T ss_pred ecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHH-----hCCCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCe
Confidence 35668899999988774 5667777777777766 4567999999999999999999999865432
Q ss_pred ------------CcCCccchheehhHHHhhhccCCccee
Q 047849 383 ------------KGVNPDEAVALGAAIQGGILRGDVKEL 409 (651)
Q Consensus 383 ------------~~~~p~~aVA~GAa~~a~~l~~~~~~~ 409 (651)
+-.||...||.||.+.......+..++
T Consensus 804 ~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~lrL~nF 842 (1002)
T PF07520_consen 804 RTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEGLRLPNF 842 (1002)
T ss_pred eecccccCCCCCcCCCchHHHHHHHHHHHHhccCCCCCc
Confidence 234899999999988665443233333
|
It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity []. |
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
Probab=98.45 E-value=4e-06 Score=88.45 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhh
Q 047849 326 ETLVNNLIERTRAPCKN-CLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGG 400 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~-~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~ 400 (651)
++++..+...+.+.+.. +++..++. +.|+++||.++.+.+.+.+++.++.++..+.+|+.+-|+|||++|.
T Consensus 331 eDIaAGl~~SIa~rv~~~l~~~~~i~----~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 331 EDVAAAACHSVAEQVYEQQLQEIDVR----EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCC----CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 44455555555444442 34443322 3699999999999999999999999999999999999999999985
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase. |
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-05 Score=82.33 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhc
Q 047849 324 KFETLVNNLIERTRAPCKN-CLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGIL 402 (651)
Q Consensus 324 ~fe~l~~~~~~~i~~~i~~-~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l 402 (651)
..|+++..+...+...+-. +++.-.+.+ -|+|+||.+....+.+++++.++.++.++.+|...-|+|||+++...
T Consensus 316 ~~EdI~AGl~~Sv~~~v~~~~~~~~~i~~----~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~~ 391 (396)
T COG1924 316 SPEDILAGLAYSVAENVAEKVIKRVDIEE----PIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKEV 391 (396)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhccCCCC----CEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhhh
Confidence 3467777777666655544 555543322 39999999999999999999999999999999999999999998753
|
|
| >KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00018 Score=74.03 Aligned_cols=154 Identities=17% Similarity=0.140 Sum_probs=95.6
Q ss_pred CCcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEe--------eCCcEEEcHhHHhhhhhCCCchhhhhhhh
Q 047849 56 GNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFN--------QKGELLVGTPAKRQAVTNPTNTLFGTKRL 127 (651)
Q Consensus 56 ~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~--------~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~ 127 (651)
....|-||.|+..+.++|....-|..+. ||++... +.+..+++..|...- ++...+..-+|
T Consensus 10 Ev~alViDpGS~~traGyaged~Pk~il--------PS~~G~~tk~~~d~~~~~~~y~~~~ai~~p-r~gmEv~~~i~-- 78 (426)
T KOG0679|consen 10 EVSALVIDPGSHTTRAGYAGEDSPKAIL--------PSVYGKVTKTDGDAEDKKGYYVDENAIHVP-RPGMEVKTPIK-- 78 (426)
T ss_pred ccceEEEeCCCceEeccccCCCCccccc--------cceeeeeecccCccccccceEeechhccCC-CCCCeeccchh--
Confidence 3457899999999999999887777553 7777641 011234555443210 00000111111
Q ss_pred hCCCCCChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHH
Q 047849 128 IGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQ 207 (651)
Q Consensus 128 lg~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~ 207 (651)
+| - +.-=++..+.++|..+.-. +....-.-++||-|++=+.+.|+
T Consensus 79 -------------------------nG--------l-v~dWD~~~~~w~~~~~~~L-k~~p~ehP~litEp~wN~~~~Re 123 (426)
T KOG0679|consen 79 -------------------------NG--------L-VEDWDLFEMQWRYAYKNQL-KVNPEEHPVLITEPPWNTRANRE 123 (426)
T ss_pred -------------------------cC--------C-cccHHHHHHHHHHHHhhhh-hcCccccceeeecCCCCcHHHHH
Confidence 11 1 1111344455555553221 12233346899999988888888
Q ss_pred HHHHH-HHHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEE
Q 047849 208 ATKDA-GRIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 208 ~l~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~ 259 (651)
.+.+. .+...++...|..+|+++|++-+.. +.||+|+|++++.++-+.
T Consensus 124 k~~ElmFE~~nvPAf~L~k~~v~~AFA~Grs----talVvDiGa~~~svsPV~ 172 (426)
T KOG0679|consen 124 KLTELMFEKLNVPAFYLAKTAVCTAFANGRS----TALVVDIGATHTSVSPVH 172 (426)
T ss_pred HHHHHHHhhcCCceEEEechHHHHHHhcCCC----ceEEEEecCCCceeeeee
Confidence 76655 5667888889999999999876632 789999999999999654
|
|
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.5e-05 Score=75.45 Aligned_cols=71 Identities=20% Similarity=0.223 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhc-CC----CCCcCCccchheehhHHHh
Q 047849 326 ETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFG-KS----PSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~-~~----~~~~~~p~~aVA~GAa~~a 399 (651)
++++..+...+...+...+++.+.. -+.|+|+||.++.+.+.+.|++.++ .+ +..+.+|+.+-|+|||++|
T Consensus 187 edI~aGl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 187 PNILKGIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 4455555555555554555543321 1369999999999999999999994 22 4456789999999999975
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >PRK13317 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00038 Score=71.30 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=42.7
Q ss_pred CCCeEEEec-CccCcHhHHHHHHHHh---cCCCCCcCCccchheehhHHHhh
Q 047849 353 DVDEVLLVG-GMTRVPKVQEVVSEIF---GKSPSKGVNPDEAVALGAAIQGG 400 (651)
Q Consensus 353 ~i~~VvLvG-Gss~ip~i~~~l~~~f---~~~~~~~~~p~~aVA~GAa~~a~ 400 (651)
.++.|+++| |.++.|.+++.+.+.+ +.++..+.+|..+.|+|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 456999999 7999999999999988 56677889999999999999876
|
|
| >COG5277 Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00065 Score=74.02 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=52.6
Q ss_pred CeEEEEecCCCCHHHHHHHHHH-HHHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEE
Q 047849 191 SKAVITVPAYFNDAQRQATKDA-GRIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 191 ~~~VITVPa~f~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~ 259 (651)
..+++|-|..+...+|..+.+. .+...++.+.+..++.+++.+.+... .+.+|+|+|.+.++++=+-
T Consensus 107 ~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~--~~g~ViD~G~~~t~v~PV~ 174 (444)
T COG5277 107 HPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSD--ETGLVIDSGDSVTHVIPVV 174 (444)
T ss_pred CceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCC--CceEEEEcCCCceeeEeee
Confidence 4699999999999888776554 56667777788888888877665432 3679999999999999653
|
|
| >COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0036 Score=68.63 Aligned_cols=90 Identities=18% Similarity=0.220 Sum_probs=59.3
Q ss_pred eEEEEecHHHHHHHHHHH---HHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCC---------
Q 047849 315 HLNITLTRSKFETLVNNL---IERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPS--------- 382 (651)
Q Consensus 315 ~~~~~itr~~fe~l~~~~---~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~--------- 382 (651)
++.+.|.-.++++.+-.. +......+-+++.. .+.|.++|+|--+|+|.+|..++...+.++.
T Consensus 742 d~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yr 816 (1014)
T COG4457 742 DVPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYR 816 (1014)
T ss_pred ccceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEecccee
Confidence 344666666666555332 33333334444433 4567999999999999999999988754322
Q ss_pred -----------CcCCccchheehhHHHhhhccCCccee
Q 047849 383 -----------KGVNPDEAVALGAAIQGGILRGDVKEL 409 (651)
Q Consensus 383 -----------~~~~p~~aVA~GAa~~a~~l~~~~~~~ 409 (651)
+-.||...+|.||-+.+..+.-+..++
T Consensus 817 vg~WYPF~k~grIddPKtTAaVGAMLC~Lsl~~rl~nF 854 (1014)
T COG4457 817 VGTWYPFRKQGRIDDPKTTAAVGAMLCALSLELRLPNF 854 (1014)
T ss_pred ccceecccccCcCCCcchHHHHHHHHHHHHhhccCcce
Confidence 235899999999988776655444443
|
|
| >PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00055 Score=67.89 Aligned_cols=180 Identities=21% Similarity=0.213 Sum_probs=91.6
Q ss_pred HHHcCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEecccccc----cC--------CCCccCHHHH
Q 047849 213 GRIAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFED----EG--------IDLSKDRLAL 279 (651)
Q Consensus 213 a~~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~~----~~--------~~~~~~~~~~ 279 (651)
-+..|.++.--=-|+.+|.+.......-+ .+.++|+||||+|.+++.-.+.+..- .| ..+..+
T Consensus 105 ~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~~iHlAGAG~mVTmlI~sELGl~---- 180 (332)
T PF08841_consen 105 EEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVTAIHLAGAGNMVTMLINSELGLE---- 180 (332)
T ss_dssp HHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EEEEEEE-SHHHHHHHHHHHCT-S----
T ss_pred HHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEEEEEecCCchhhHHHHHHhhCCC----
Confidence 34568888777889999998776665444 89999999999999999754433220 00 000011
Q ss_pred HHHHHHHHHhhhhcCC-----------CceeEEEecceeccCCCC-----eeEEEEec----HHHHHHHHHHHHHHH-HH
Q 047849 280 QRLREAAEKAKIELSS-----------TTQTDINLPFITADASGA-----KHLNITLT----RSKFETLVNNLIERT-RA 338 (651)
Q Consensus 280 ~~L~~~~e~~K~~Ls~-----------~~~~~i~i~~~~~~~~g~-----~~~~~~it----r~~fe~l~~~~~~~i-~~ 338 (651)
-+.-+|..|+-=-. .....+.-+.+..+.-+. .+..+.|+ -+++..+=+..-+++ ..
T Consensus 181 --d~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~~lEkir~vRr~AK~kVFVt 258 (332)
T PF08841_consen 181 --DRELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDLSLEKIRSVRREAKEKVFVT 258 (332)
T ss_dssp ---HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS-HHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCccHHHHHHHHHHhhhhhhHH
Confidence 13457777764210 011111111111110000 01122332 222222222221211 11
Q ss_pred HHHHHHHHc--CCCCCCCCeEEEecCccCcHhHHHHHHHHhcC--------CCCCcCCccchheehhHHH
Q 047849 339 PCKNCLKDA--NITTKDVDEVLLVGGMTRVPKVQEVVSEIFGK--------SPSKGVNPDEAVALGAAIQ 398 (651)
Q Consensus 339 ~i~~~l~~a--~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~--------~~~~~~~p~~aVA~GAa~~ 398 (651)
-.-++|++- .-+..+|+.|+|||||+.=--|-+++.+.+.. ++.-..-|..|||.|.++.
T Consensus 259 Na~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNAVATGLvls 328 (332)
T PF08841_consen 259 NALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNAVATGLVLS 328 (332)
T ss_dssp HHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHHHHHHHHHh
Confidence 222333332 22346899999999999988888888888732 2333567999999999874
|
This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C. |
| >PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0069 Score=65.31 Aligned_cols=68 Identities=22% Similarity=0.280 Sum_probs=42.2
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCceEEe---ecchHHHhhhhccc---cCCC-eEEEEEeCCcceEEEEEEE
Q 047849 193 AVITVPAYFNDAQRQATKDAGRIAGLDVQRI---INEPTAASLSYGMN---NKEG-LIAVFDLGGGTFDVSILEI 260 (651)
Q Consensus 193 ~VITVPa~f~~~qr~~l~~Aa~~AGl~~~~l---i~Ep~AAAl~y~~~---~~~~-~vlVvD~GggT~Dvsv~~~ 260 (651)
+.||==+-=.+..|..+..-+..||==++.- =.|..-|+...+.. +... .|+=+|+||||+.+++++-
T Consensus 88 VIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~ 162 (473)
T PF06277_consen 88 VIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDN 162 (473)
T ss_pred EEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEEC
Confidence 5666555556677777777777777433322 12444444322221 2223 8999999999999999873
|
The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO. |
| >TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00063 Score=71.38 Aligned_cols=71 Identities=13% Similarity=0.124 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhc-----CCCCCcCCccchheehhHHHh
Q 047849 326 ETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFG-----KSPSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~-----~~~~~~~~p~~aVA~GAa~~a 399 (651)
++++..+...+..-+...+.+.+ ..-+.|+|+||.++.+.+.+.|++.++ .++..+.+|+.+-|+|||++|
T Consensus 357 eDIaAGL~~SIA~Rv~s~l~r~~---~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 357 EDILAGLHRAIILRAISIISRSG---GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc---CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 34555555555555555555431 112479999999999999999999994 456788999999999999985
|
This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type). |
| >KOG0797 consensus Actin-related protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0035 Score=66.90 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=70.7
Q ss_pred CeeeChhhHHHHHHHHHHHHHHHhhCCCCC-----eEEEEecCCCCHHHH-HHHHHHHHHcCCceEEeecchHHHhhhhc
Q 047849 162 GQQYSPSQIGAFVLTKMKETAESYLGKSVS-----KAVITVPAYFNDAQR-QATKDAGRIAGLDVQRIINEPTAASLSYG 235 (651)
Q Consensus 162 ~~~~s~eev~a~~L~~l~~~a~~~~~~~~~-----~~VITVPa~f~~~qr-~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~ 235 (651)
...+|..++++++-+-+.-.....+..+.+ .+|+-||-.|..... +.+.--....||....++-|..||.+..|
T Consensus 194 ~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaG 273 (618)
T KOG0797|consen 194 PPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAG 273 (618)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCC
Confidence 455677777777644444444555555544 589999999986664 45555577889999999999999998766
Q ss_pred cccCCCeEEEEEeCCcceEEEEEE
Q 047849 236 MNNKEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 236 ~~~~~~~vlVvD~GggT~Dvsv~~ 259 (651)
+. .-.|||+|+-+|.|+.++
T Consensus 274 ls----s~CVVdiGAQkTsIaCVE 293 (618)
T KOG0797|consen 274 LS----SACVVDIGAQKTSIACVE 293 (618)
T ss_pred cc----ceeEEEccCcceeEEEee
Confidence 65 458999999999999886
|
|
| >KOG0676 consensus Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0099 Score=62.78 Aligned_cols=61 Identities=21% Similarity=0.210 Sum_probs=38.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEE
Q 047849 191 SKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVS 256 (651)
Q Consensus 191 ~~~VITVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvs 256 (651)
..+++|=|..+...-|+.+.+..-.. |++-.+.-.- .|.+ |+.... +=+|+|+|.|-+++.
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE~-fnvpa~yva~-qavl-ya~g~t--tG~VvD~G~gvt~~v 160 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFET-FNVPALYVAI-QAVL-YASGRT--TGLVVDSGDGVTHVV 160 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhhh-cCccHhHHHH-HHHH-HHcCCe--eEEEEEcCCCceeee
Confidence 57999999999999998887654332 2333332222 3322 443322 459999999966544
|
|
| >PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0014 Score=63.70 Aligned_cols=76 Identities=18% Similarity=0.323 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 325 FETLVNNLIERTRAPCKNCLKDANIT-TKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 325 fe~l~~~~~~~i~~~i~~~l~~a~~~-~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
..++++.+++.+.-.++..++...-. ...++.|+++||.++.|.+.+++.+.|+.++.+..+ .++.|.|||+.|+.
T Consensus 120 ~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 120 RADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 44555556655555555555543111 235789999999999999999999999987766555 88999999999874
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A .... |
| >PRK15027 xylulokinase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0097 Score=66.53 Aligned_cols=52 Identities=27% Similarity=0.316 Sum_probs=45.9
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.++.|+++||+++++...+++.+.||.++....+.+++.++|||+.|+.-.+
T Consensus 386 ~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~lA~~~~G 437 (484)
T PRK15027 386 KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAAN 437 (484)
T ss_pred CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHHHHHhcC
Confidence 4789999999999999999999999999876667777889999999986544
|
|
| >PLN02669 xylulokinase | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.017 Score=65.64 Aligned_cols=72 Identities=18% Similarity=0.308 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 328 LVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 328 l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
+++.+++.+.=.++..++..+.. ..++.|+++||+|+.+.+.+++.+.||.++.+...+ ++.|+|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC-CchHHHHHHHHHH
Confidence 45555555555555555554432 457899999999999999999999999987665555 6889999999985
|
|
| >TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.016 Score=65.73 Aligned_cols=84 Identities=15% Similarity=0.212 Sum_probs=62.9
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHH
Q 047849 319 TLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 398 (651)
Q Consensus 319 ~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~ 398 (651)
.-+|..+..+++.+++.+.=.++..++...-....++.|.++||.++++...+++.+.||.++.+..++ ++.++|||++
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~l 487 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYVN-EAVLHGAAML 487 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecChh-HHHHHHHHHH
Confidence 335666677777777777666665555432112357899999999999999999999999988766555 5789999999
Q ss_pred hhhcc
Q 047849 399 GGILR 403 (651)
Q Consensus 399 a~~l~ 403 (651)
|+.-.
T Consensus 488 A~~~~ 492 (541)
T TIGR01315 488 GAKAA 492 (541)
T ss_pred HHHhc
Confidence 98643
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. |
| >PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.026 Score=58.54 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCC-CCCcCCccchheehhHH
Q 047849 330 NNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKS-PSKGVNPDEAVALGAAI 397 (651)
Q Consensus 330 ~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~-~~~~~~p~~aVA~GAa~ 397 (651)
+-..+++.+.|+......+.++.+. .++.+||.+ |.+-..|.+.+|.+ +..+..+.-+-|+||++
T Consensus 218 ~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 218 RIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHT--EEEE--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--cccccccccccccccccccccccccccccccc
Confidence 3344444455555544445544322 345556665 78888888888865 44555678888999986
|
5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B. |
| >PRK00047 glpK glycerol kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.034 Score=62.40 Aligned_cols=78 Identities=22% Similarity=0.314 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 326 ETLVNNLIERTRAPCKNCLKDAN-ITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~-~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.++++.+++.+.-.++..++... .....++.|.++||.++++.+.+++.+.||.++.... ..++.|+|||+.|+.-.+
T Consensus 375 ~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 375 EHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADILGVPVERPV-VAETTALGAAYLAGLAVG 453 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhhCCeeEecC-cccchHHHHHHHHhhhcC
Confidence 34455555555444444443321 1122478999999999999999999999999886544 456889999999886443
|
|
| >PRK04123 ribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.037 Score=62.93 Aligned_cols=75 Identities=23% Similarity=0.346 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCc-cCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhc
Q 047849 327 TLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGM-TRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGIL 402 (651)
Q Consensus 327 ~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGs-s~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l 402 (651)
++++.+++.+.-.++..++...-....++.|+++||. ++++.+.+++.+.||.++.+.. +.++.++|||+.|+.-
T Consensus 412 ~l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~lA~~~ 487 (548)
T PRK04123 412 DIYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCPALGAAIFAAVA 487 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccchHHHHHHHHHH
Confidence 4555555555544443333321112357899999999 9999999999999999885544 4568899999999863
|
|
| >TIGR01311 glycerol_kin glycerol kinase | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.032 Score=62.53 Aligned_cols=78 Identities=21% Similarity=0.313 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 326 ETLVNNLIERTRAPCKNCLKDAN-ITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~-~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.++++.+++.+.-.++..++... .....++.|.++||.++++...+++.+.||.++.... ..++.|+|||+.|+.-.+
T Consensus 371 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~~-~~e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 371 AHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADILGVPVVRPK-VTETTALGAAYAAGLAVG 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhcCCeeEecC-CCcchHHHHHHHHHhhcC
Confidence 34444444444444444443321 1123478999999999999999999999999886544 456889999999886443
|
This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases. |
| >TIGR01312 XylB D-xylulose kinase | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.042 Score=61.39 Aligned_cols=79 Identities=23% Similarity=0.339 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhcc
Q 047849 325 FETLVNNLIERTRAPCKNCLKDAN-ITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILR 403 (651)
Q Consensus 325 fe~l~~~~~~~i~~~i~~~l~~a~-~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~ 403 (651)
...+++.+++.+.-.++..++... .....++.|+++||.++.+.+.+++.+.||.++.... ..++.++|||+.|+.-.
T Consensus 361 ~~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~-~~e~~a~GaA~~a~~~~ 439 (481)
T TIGR01312 361 RADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPE-GEEGPALGAAILAAWAL 439 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHhCCceeecC-CCcchHHHHHHHHHHhc
Confidence 334444444444444444433321 1113578999999999999999999999999876554 56688999999998654
Q ss_pred C
Q 047849 404 G 404 (651)
Q Consensus 404 ~ 404 (651)
+
T Consensus 440 g 440 (481)
T TIGR01312 440 G 440 (481)
T ss_pred C
Confidence 4
|
D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. |
| >TIGR02628 fuculo_kin_coli L-fuculokinase | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.036 Score=61.68 Aligned_cols=77 Identities=21% Similarity=0.203 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 325 FETLVNNLIERTRAPCKNCL---KDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 325 fe~l~~~~~~~i~~~i~~~l---~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
-.++++.+++.+.-.++..+ ++.+ ...++.|.++||++++|...+++.+.||.++.+..++ ++.++|||+.|+.
T Consensus 364 ~~~l~rAvlEgia~~~r~~~e~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~-e~~~lGaA~~a~~ 440 (465)
T TIGR02628 364 RGHIYRAALEGLTAQLKRNLQMLEQIG--QFKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDDA-ETTVAGAAMFGFY 440 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcceEEEecCccCCHHHHHHhhhhcCCeeEeccCC-cchHHHHHHHHHH
Confidence 34455555655544444443 3332 1246899999999999999999999999988665554 6789999999986
Q ss_pred ccC
Q 047849 402 LRG 404 (651)
Q Consensus 402 l~~ 404 (651)
-.+
T Consensus 441 a~G 443 (465)
T TIGR02628 441 GVG 443 (465)
T ss_pred hcC
Confidence 443
|
Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon. |
| >PTZ00294 glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.041 Score=61.88 Aligned_cols=78 Identities=21% Similarity=0.336 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 326 ETLVNNLIERTRAPCKNCLKDANI-TTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~~-~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
..+++.+++.+.-.++..++...- ....++.|.++||.++++.+.+++.+.||.++.... ..++.++|||+.|+.-.+
T Consensus 378 ~~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 378 AHIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALLAGLAVG 456 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHHHHhhcC
Confidence 344455555544444444433210 112378999999999999999999999999886555 445789999999986444
|
|
| >TIGR01234 L-ribulokinase L-ribulokinase | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.045 Score=62.02 Aligned_cols=77 Identities=23% Similarity=0.340 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCc-cCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 327 TLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGM-TRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 327 ~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGs-s~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
++++.+++.+.-.++..++...-....++.|+++||. ++.+.+.+++.+.||.++.+..++ ++.|+|||+.|+.-.+
T Consensus 409 ~~~RAvlEgia~~~~~~l~~l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~-e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 409 LLYRALIEATAFGTRMIMETFTDSGVPVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASD-QAPALGAAIFAAVAAG 486 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCC-cchhHHHHHHHHHHcC
Confidence 3444444444433333333321112357899999999 999999999999999988666654 5789999999886443
|
This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli. |
| >PRK10331 L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.046 Score=60.89 Aligned_cols=77 Identities=23% Similarity=0.219 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 327 TLVNNLIERTRAPCKNCLKDAN-ITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 327 ~l~~~~~~~i~~~i~~~l~~a~-~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
++++.+++.+.-.++..++... .....++.|.++||.++++...+++.+.||.++..... .++.++|||+.|+.-.+
T Consensus 362 ~l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~~-~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 362 HFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANMLDIPIKVLDD-AETTVAGAAMFGWYGVG 439 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhcCCeeEecCc-ccchHHHHHHHHHHhcC
Confidence 3445555554444444443321 11235789999999999999999999999998865554 46889999999986443
|
|
| >TIGR01314 gntK_FGGY gluconate kinase, FGGY type | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.056 Score=60.80 Aligned_cols=75 Identities=19% Similarity=0.221 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 326 ETLVNNLIERTRAPCK----NCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~----~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
.++++.+++.+.-.++ ...+..+ ..++.|.++||.++.+...+++.+.||.++....++ ++.++|||+.|+.
T Consensus 373 ~~l~rAvlEgia~~~~~~~~~~~~~~g---~~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la~~ 448 (505)
T TIGR01314 373 EHMIRAALEGVIYNLYTVALALVEVMG---DPLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILGLK 448 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHHHH
Confidence 3445555544444433 3333233 257899999999999999999999999988665555 5889999999986
Q ss_pred ccC
Q 047849 402 LRG 404 (651)
Q Consensus 402 l~~ 404 (651)
-.+
T Consensus 449 ~~G 451 (505)
T TIGR01314 449 ALG 451 (505)
T ss_pred hcC
Confidence 443
|
Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. |
| >PLN02295 glycerol kinase | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.066 Score=60.30 Aligned_cols=79 Identities=20% Similarity=0.269 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc----CC--CCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHH
Q 047849 325 FETLVNNLIERTRAPCKNCLKDA----NI--TTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 398 (651)
Q Consensus 325 fe~l~~~~~~~i~~~i~~~l~~a----~~--~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~ 398 (651)
-.++++.+++.+.-.++..++.. +. ....++.|.++||++++|.+.+++.+.||.++.... ..++.|+|||+.
T Consensus 378 ~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~~ 456 (512)
T PLN02295 378 KAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRPA-DIETTALGAAYA 456 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEecC-ccccHHHHHHHH
Confidence 34455555555544444444432 21 223578999999999999999999999999885544 457889999999
Q ss_pred hhhccC
Q 047849 399 GGILRG 404 (651)
Q Consensus 399 a~~l~~ 404 (651)
|+.-.+
T Consensus 457 A~~~~G 462 (512)
T PLN02295 457 AGLAVG 462 (512)
T ss_pred HHhhcC
Confidence 886443
|
|
| >TIGR02627 rhamnulo_kin rhamnulokinase | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.054 Score=60.03 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=42.9
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.++.|.++||+++.+...+++.+.+|.++... +.++.|+|||+.|+.-.+
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~--~~e~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADACGIRVIAG--PVEASTLGNIGVQLMALD 436 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHhCCceEcC--CchHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999988543 356889999999886544
|
This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism. |
| >COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.57 Score=47.99 Aligned_cols=19 Identities=32% Similarity=0.651 Sum_probs=17.2
Q ss_pred eEEEEEeCCcceEEEEEEE
Q 047849 242 LIAVFDLGGGTFDVSILEI 260 (651)
Q Consensus 242 ~vlVvD~GggT~Dvsv~~~ 260 (651)
.|+=+|+||||+..|++.-
T Consensus 146 ~v~NlDIGGGTtN~slFD~ 164 (473)
T COG4819 146 RVLNLDIGGGTTNYSLFDA 164 (473)
T ss_pred EEEEEeccCCccceeeecc
Confidence 8899999999999999863
|
|
| >KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.089 Score=57.74 Aligned_cols=79 Identities=22% Similarity=0.388 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC-CCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 326 ETLVNNLIERTRAPCKNCLKDANITT-KDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~~~~-~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
+.+....++.+.-.++..|+....+. ..|+.+.+.||.|+.|.+.+.+.+.+|.++.++.+++. ++.|||+.|+..++
T Consensus 386 ~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~ 464 (516)
T KOG2517|consen 386 EHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASG 464 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcC
Confidence 44444555555544445544433333 57889999999999999999999999999999888887 99999999998776
Q ss_pred C
Q 047849 405 D 405 (651)
Q Consensus 405 ~ 405 (651)
.
T Consensus 465 ~ 465 (516)
T KOG2517|consen 465 K 465 (516)
T ss_pred C
Confidence 4
|
|
| >PRK10939 autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.075 Score=59.99 Aligned_cols=50 Identities=24% Similarity=0.323 Sum_probs=43.1
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhcc
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILR 403 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~ 403 (651)
.++.|+++||.++++...+++.+.||.++.+..++ ++.++|||+.|+.-.
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA~~~~ 458 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVK-EATALGCAIAAGVGA 458 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEeccc-CchHHHHHHHHHHHh
Confidence 47899999999999999999999999988766555 578999999988643
|
|
| >PRK10854 exopolyphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.53 Score=52.96 Aligned_cols=53 Identities=28% Similarity=0.471 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCceEEeecchHHHhhhh-ccccC---CCeEEEEEeCCcceEEEEEE
Q 047849 206 RQATKDAGRIAGLDVQRIINEPTAASLSY-GMNNK---EGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 206 r~~l~~Aa~~AGl~~~~li~Ep~AAAl~y-~~~~~---~~~vlVvD~GggT~Dvsv~~ 259 (651)
...+.++-+..|+++ ++|+..+=|.+.| +.... .++.+|+|+|||++.+++++
T Consensus 99 ~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~ 155 (513)
T PRK10854 99 TDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGE 155 (513)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEec
Confidence 444555666679998 6777766666655 32221 13689999999999999986
|
|
| >smart00842 FtsA Cell division protein FtsA | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.15 Score=49.25 Aligned_cols=29 Identities=31% Similarity=0.361 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCceEEeecchHHHhhh
Q 047849 205 QRQATKDAGRIAGLDVQRIINEPTAASLS 233 (651)
Q Consensus 205 qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~ 233 (651)
..+.+.++.+.|||++..++.+|.|++.+
T Consensus 158 ~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 158 AIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 47788999999999999999999999864
|
FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931. |
| >PRK10640 rhaB rhamnulokinase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.08 Score=58.93 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=42.5
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.++.|.++||+++++...+++.+.+|.++.... .++.++|||+.|+.-.+
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a~~a~G 424 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQLMTLD 424 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999885543 37889999999886444
|
|
| >PRK13321 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=93.83 E-value=2 Score=43.58 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=17.4
Q ss_pred EEEEEcCCceEEEEEEeCC
Q 047849 59 IIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~ 77 (651)
+++||+|.|++++++++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 6899999999999999865
|
|
| >KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.18 Score=53.79 Aligned_cols=56 Identities=18% Similarity=0.388 Sum_probs=47.8
Q ss_pred HHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 345 KDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 345 ~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
+..+......+.|++|||.|+-..|-+.|.+.||.++... +..++.|.|+|+.|+.
T Consensus 434 ~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 434 EPLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred ccccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 3456666678899999999999999999999999987765 7778899999998774
|
|
| >PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=1.3 Score=49.56 Aligned_cols=54 Identities=24% Similarity=0.345 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCceEEeecchHHHhhhh-cccc---CCCeEEEEEeCCcceEEEEEE
Q 047849 205 QRQATKDAGRIAGLDVQRIINEPTAASLSY-GMNN---KEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 205 qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y-~~~~---~~~~vlVvD~GggT~Dvsv~~ 259 (651)
....+.++-+..|+++ ++|+..+=|-+.| +... ..+..+|+|+|||++.+++++
T Consensus 93 ~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~ 150 (496)
T PRK11031 93 ADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGT 150 (496)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEec
Confidence 3455666667789998 6777666666555 2222 113689999999999999986
|
|
| >PRK13318 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=93.17 E-value=5 Score=40.74 Aligned_cols=19 Identities=42% Similarity=0.789 Sum_probs=17.3
Q ss_pred EEEEEcCCceEEEEEEeCC
Q 047849 59 IIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~ 77 (651)
+++||+|.|++++++++++
T Consensus 2 iL~IDIGnT~iK~al~d~g 20 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGG 20 (258)
T ss_pred EEEEEECCCcEEEEEEECC
Confidence 7899999999999999854
|
|
| >KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.89 E-value=2.2 Score=42.26 Aligned_cols=205 Identities=18% Similarity=0.196 Sum_probs=112.4
Q ss_pred CCCeEEEEecCCCCHHHHHHHHHH-HHHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEEEec--cc-
Q 047849 189 SVSKAVITVPAYFNDAQRQATKDA-GRIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILEISN--GV- 264 (651)
Q Consensus 189 ~~~~~VITVPa~f~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~~~~--~~- 264 (651)
+-.++.+|=|.--....|+.|.+. .+.-||.-+.+.-...-+ -|+..-- .=+|+|-|.|-+-+.-+.-+- ..
T Consensus 100 ~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLt--LYAQGL~--tGvVvDSGDGVTHi~PVye~~~l~HL 175 (389)
T KOG0677|consen 100 TNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLT--LYAQGLL--TGVVVDSGDGVTHIVPVYEGFVLPHL 175 (389)
T ss_pred ccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHH--HHHhccc--ceEEEecCCCeeEEeeeecceehhhh
Confidence 334789999998888888877665 567788876554333222 2432211 348999999988776442110 00
Q ss_pred ---ccccCCCCccCHHHHHHH-------------HHHHHHhhhhcCCC-----------ceeEEEecceeccCCCCeeEE
Q 047849 265 ---FEDEGIDLSKDRLALQRL-------------REAAEKAKIELSST-----------TQTDINLPFITADASGAKHLN 317 (651)
Q Consensus 265 ---~~~~~~~~~~~~~~~~~L-------------~~~~e~~K~~Ls~~-----------~~~~i~i~~~~~~~~g~~~~~ 317 (651)
.+-.|-|++. -+.+| .+..+..|+.|.-- -++++-++... -. +.-.
T Consensus 176 trRldvAGRdiTr---yLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Yt-LP---DGRv 248 (389)
T KOG0677|consen 176 TRRLDVAGRDITR---YLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVESYT-LP---DGRV 248 (389)
T ss_pred hhhccccchhHHH---HHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeeee-cC---CCcE
Confidence 0011111111 01111 23455666666421 11122111110 00 1123
Q ss_pred EEecHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCCC--CCCeEEEecCccCcHhHHHHHHHHhcC--------
Q 047849 318 ITLTRSKFE---TLVNNLI-----ERTRAPCKNCLKDANITTK--DVDEVLLVGGMTRVPKVQEVVSEIFGK-------- 379 (651)
Q Consensus 318 ~~itr~~fe---~l~~~~~-----~~i~~~i~~~l~~a~~~~~--~i~~VvLvGGss~ip~i~~~l~~~f~~-------- 379 (651)
+.+--+.|| .+++|.+ ..+.+++-.+++.+.++.. --.+|+|.||++.-|.+-..|++.+..
T Consensus 249 IkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~ 328 (389)
T KOG0677|consen 249 IKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLK 328 (389)
T ss_pred EEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHc
Confidence 555555564 5566533 2355566677777655432 236899999999999988877765421
Q ss_pred -----------CCCCcCCccchheehhHHHhhhccC
Q 047849 380 -----------SPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 380 -----------~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.+..++.-...|-+|.|.+|.++..
T Consensus 329 ~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 329 GDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred CChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 1122344467888898888887654
|
|
| >PRK09698 D-allose kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.84 E-value=6.7 Score=40.74 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=26.6
Q ss_pred cCCceEEeecchHHHhhhhcccc--CCCeEEEEEeCCcceEEEEE
Q 047849 216 AGLDVQRIINEPTAASLSYGMNN--KEGLIAVFDLGGGTFDVSIL 258 (651)
Q Consensus 216 AGl~~~~li~Ep~AAAl~y~~~~--~~~~vlVvD~GggT~Dvsv~ 258 (651)
.|++ +.+.|+-.|+|++-.... ...+++++.+|.| .-.+++
T Consensus 104 ~~~p-v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtG-IG~giv 146 (302)
T PRK09698 104 LNCP-VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTG-MGFAVW 146 (302)
T ss_pred hCCC-EEEcchHhHHHHHHHHhcCCCCceEEEEEecCc-eEEEEE
Confidence 4776 479999999987643221 1237888888866 444444
|
|
| >COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.55 Score=46.51 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEecCCCCHH-HHHHHHHHHHHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcce
Q 047849 175 LTKMKETAESYLGKSVSKAVITVPAYFNDA-QRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTF 253 (651)
Q Consensus 175 L~~l~~~a~~~~~~~~~~~VITVPa~f~~~-qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~ 253 (651)
.+.|.+.+++.++.++ .++++-..|... .....++.|. - ...|.-.+......+.+++||+|..|+
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~vAA---a--------NW~Ata~~~~e~~~dsci~VD~GSTTt 142 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREVAA---A--------NWVATARFLAEEIKDSCILVDMGSTTT 142 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHHHH---h--------hhHHHHHHHHHhcCCceEEEecCCccc
Confidence 4567777888777765 888998888754 2221222110 0 011111122222334799999999999
Q ss_pred EEEEEE
Q 047849 254 DVSILE 259 (651)
Q Consensus 254 Dvsv~~ 259 (651)
|+.=+.
T Consensus 143 DIIPi~ 148 (330)
T COG1548 143 DIIPIK 148 (330)
T ss_pred ceEeec
Confidence 998765
|
|
| >PF13941 MutL: MutL protein | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.58 Score=51.21 Aligned_cols=43 Identities=26% Similarity=0.577 Sum_probs=31.5
Q ss_pred EEEEEcCCceEEEEEEe--CCceEEEeCCCCCccceEEEEEeeCCcEEEcHh
Q 047849 59 IIGIDLGTTNSCVALME--GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTP 108 (651)
Q Consensus 59 vvGID~GTt~s~va~~~--~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~ 108 (651)
++-+||||||+++..++ .+..+++. .-..||.| - + +.+..|..
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig----~a~apTTv-~-~-~Dv~~G~~ 46 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIG----QAEAPTTV-E-P-GDVTIGLN 46 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEE----EEeCCCCc-C-c-ccHHHHHH
Confidence 68899999999999998 77777764 44567777 2 3 44555553
|
|
| >COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.76 E-value=1.2 Score=49.38 Aligned_cols=90 Identities=20% Similarity=0.275 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCC--HHHHHHHHHHHHHcCCceEEeecchHHHhhhh-ccc--cC-CCe
Q 047849 169 QIGAFVLTKMKETAESYLGKSVSKAVITVPAYFN--DAQRQATKDAGRIAGLDVQRIINEPTAASLSY-GMN--NK-EGL 242 (651)
Q Consensus 169 ev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~--~~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y-~~~--~~-~~~ 242 (651)
+.+...+..|+..++...+..+.++.+---+.+- ...-+.+..+-+..|+++ .+|+.-+=|-+.| +.- -. .+.
T Consensus 52 eai~R~~~aL~~f~e~~~~~~~~~v~~vATsA~R~A~N~~eFl~rv~~~~G~~i-evIsGeeEArl~~lGv~~~~~~~~~ 130 (492)
T COG0248 52 EAIERALSALKRFAELLDGFGAEEVRVVATSALRDAPNGDEFLARVEKELGLPI-EVISGEEEARLIYLGVASTLPRKGD 130 (492)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEEEEehhHHHHcCCCHHHHHHHHHHHhCCce-EEeccHHHHHHHHHHHHhcCCCCCC
Confidence 3445555556665555555555553221111111 223456788888889998 5555444443333 322 12 348
Q ss_pred EEEEEeCCcceEEEEEE
Q 047849 243 IAVFDLGGGTFDVSILE 259 (651)
Q Consensus 243 vlVvD~GggT~Dvsv~~ 259 (651)
.+|+|+|||+|.+++..
T Consensus 131 ~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 131 GLVIDIGGGSTELVLGD 147 (492)
T ss_pred EEEEEecCCeEEEEEec
Confidence 99999999999999986
|
|
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.07 Score=47.48 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=16.2
Q ss_pred EEEEEeCCcceEEEEEEEe
Q 047849 243 IAVFDLGGGTFDVSILEIS 261 (651)
Q Consensus 243 vlVvD~GggT~Dvsv~~~~ 261 (651)
|+++|+|++++.+++++.+
T Consensus 1 i~~iDiGs~~~~~~i~~~~ 19 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDG 19 (120)
T ss_dssp EEEEEE-SSSEEEEEEETT
T ss_pred CEEEEcCCCcEEEEEEEeC
Confidence 6899999999999999863
|
|
| >COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.3 Score=54.87 Aligned_cols=50 Identities=22% Similarity=0.275 Sum_probs=37.9
Q ss_pred CCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 352 KDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 352 ~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
..++.|.++||+++.+...+++.+.||.++..+...+.+.+.||++.+..
T Consensus 400 ~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A~~~~~~ 449 (502)
T COG1070 400 KPPSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAA 449 (502)
T ss_pred CCccEEEEECCcccCHHHHHHHHHHcCCeeEecCcccchHHHHHHHHHHH
Confidence 45669999999999999999999999998875555555445555544443
|
|
| >KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=91.55 E-value=8.4 Score=39.66 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=22.9
Q ss_pred cEEEEEcCCceEEEEEEeCCceEEEeC
Q 047849 58 DIIGIDLGTTNSCVALMEGKNPKVIEN 84 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~~~ii~~ 84 (651)
..|-+|=|.-+.+++...+..|.+++|
T Consensus 4 ~tiVlDNGay~~KiG~s~~~~p~~vpN 30 (400)
T KOG0680|consen 4 TTIVLDNGAYNIKIGPSTNKKPFVVPN 30 (400)
T ss_pred ceEEEcCCceeEEeccCCCCCceeccc
Confidence 468899999999999998888887754
|
|
| >TIGR03706 exo_poly_only exopolyphosphatase | Back alignment and domain information |
|---|
Probab=90.53 E-value=4.6 Score=42.04 Aligned_cols=51 Identities=25% Similarity=0.333 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCceEEeecchHHHhhhhcc-cc--CCCeEEEEEeCCcceEEEEEE
Q 047849 208 ATKDAGRIAGLDVQRIINEPTAASLSYGM-NN--KEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 208 ~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~-~~--~~~~vlVvD~GggT~Dvsv~~ 259 (651)
.+...-+..|+++ ++|+..+=|.+.|.- .. .....+++|+|||++.++++.
T Consensus 90 ~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~ 143 (300)
T TIGR03706 90 FLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGK 143 (300)
T ss_pred HHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEec
Confidence 3334445679988 688888777776632 11 112459999999999999876
|
It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response. |
| >COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription] | Back alignment and domain information |
|---|
Probab=90.42 E-value=17 Score=36.57 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccC
Q 047849 322 RSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTR 365 (651)
Q Consensus 322 r~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ 365 (651)
++..+.+...++.....+|+..+++....-..-+.++++||.++
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~ 224 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAK 224 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchH
Confidence 45667777777777777777777765433224469999999864
|
|
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=89.98 E-value=0.081 Score=47.08 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcC---CceEE---------eecch-HHHhhh
Q 047849 174 VLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAG---LDVQR---------IINEP-TAASLS 233 (651)
Q Consensus 174 ~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AG---l~~~~---------li~Ep-~AAAl~ 233 (651)
.|+...+.|++..+.++..+.+++ .....+.+.++++.++ +.+-. ++..| .|+|++
T Consensus 51 ~i~~a~~~AE~~~k~~i~~v~v~~----g~s~l~~i~~~~~~~~~~~v~v~~~~~~~~~~~~~~~p~~Asa~g 119 (120)
T PF14450_consen 51 AIKIAIEEAERLAKCEIGSVYVSI----GGSKLQNIEELIEKCGGMPVRVAGPNIVEGLPEIVLNPEYASAIG 119 (120)
T ss_dssp HHT--HHHHHHH-HHHH--S--TT----GGGGSTTHHHHHHHHHTS-EEE--GGGSET-HHHHT-GGGHHHHH
T ss_pred HHHHHHHHHHHHhCCeeeEEEecC----chhHHHhHHHHHHHhCCCcEEEccccccCcchhhccCceeeEEEe
Confidence 344445556665555556666655 3344555666777776 77766 78888 787764
|
|
| >KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.95 E-value=1.9 Score=45.85 Aligned_cols=151 Identities=19% Similarity=0.283 Sum_probs=80.4
Q ss_pred CCcEEEEEcCCceEEEEEEe-CC----ceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCC
Q 047849 56 GNDIIGIDLGTTNSCVALME-GK----NPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGR 130 (651)
Q Consensus 56 ~~~vvGID~GTt~s~va~~~-~~----~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~ 130 (651)
..++|-||=|+|-|.|-++. +. .+-.+..+.=....|=.-+| ..+|+.....++.|+.+
T Consensus 66 ~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsf----------------addp~~aA~Sl~~LLd~ 129 (453)
T KOG1385|consen 66 RQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSF----------------ADDPEEAANSLRPLLDV 129 (453)
T ss_pred eEEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCccccc----------------CCChHHHHHhHHHHHHH
Confidence 45789999999999998874 11 11111110001111222233 23455556666666633
Q ss_pred CCCChHHHHHhhcceeEEEECCCCCeEEE-eCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHH
Q 047849 131 KFDDPQTQKEMQMVSYKIVRAPNGDAWVE-ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQAT 209 (651)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l 209 (651)
. ...+|.+..+ ...+.++ .-|-+..|.+-+..+|+.++++.++...-.+..-.
T Consensus 130 A---------~~~vP~~~~~--kTPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~--------------- 183 (453)
T KOG1385|consen 130 A---------EAFVPREHWK--KTPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDA--------------- 183 (453)
T ss_pred H---------HhhCCHhHhc--cCceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCc---------------
Confidence 2 2233333221 1111222 44667889999999999999988743332222111
Q ss_pred HHHHHHcCCceEEeec---chHHHh--hhhcccc---C-CCeEEEEEeCCcceEEEEEE
Q 047849 210 KDAGRIAGLDVQRIIN---EPTAAS--LSYGMNN---K-EGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 210 ~~Aa~~AGl~~~~li~---Ep~AAA--l~y~~~~---~-~~~vlVvD~GggT~Dvsv~~ 259 (651)
+.+++ |-.-|- +.|.... . .+.+.|+|+|||+|.++..-
T Consensus 184 -----------VsIm~GtdEGv~aWiTiN~Llg~L~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 184 -----------VSIMDGTDEGVYAWITINYLLGTLGAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred -----------eeeccCcccceeeeeehhhhhcccCCCCCCceEEEEcCCceEEEEEec
Confidence 22222 111111 2233321 1 23899999999999999875
|
|
| >COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.91 E-value=21 Score=37.24 Aligned_cols=35 Identities=29% Similarity=0.324 Sum_probs=24.6
Q ss_pred cCCceEEeecchHHHhhhhccccC---CCeEEEEEeCCc
Q 047849 216 AGLDVQRIINEPTAASLSYGMNNK---EGLIAVFDLGGG 251 (651)
Q Consensus 216 AGl~~~~li~Ep~AAAl~y~~~~~---~~~vlVvD~Ggg 251 (651)
.|+++ .+-|+-.|+|++-..... .++++.+-+|-|
T Consensus 106 ~~~Pv-~veNDan~aalaE~~~g~~~~~~~~~~i~~gtG 143 (314)
T COG1940 106 LGLPV-FVENDANAAALAEAWFGAGRGIDDVVYITLGTG 143 (314)
T ss_pred HCCCE-EEecHHHHHHHHHHHhCCCCCCCCEEEEEEccc
Confidence 45555 899999999998654432 237777777766
|
|
| >COG1069 AraB Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.87 E-value=0.75 Score=50.51 Aligned_cols=83 Identities=19% Similarity=0.314 Sum_probs=58.6
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHh
Q 047849 320 LTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 320 itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a 399 (651)
=+.+.+-.+....+.-+.--.+..++...-..-.|+.|+..||-.+.|.+.+.+.+..|+++..+ ..+++++.|+|+.|
T Consensus 398 T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~Id~l~~sGG~~KN~llmql~aDvtg~~v~i~-~s~~a~llGsAm~~ 476 (544)
T COG1069 398 TSPESLALLYRALLEATAFGTRAIIETFEDQGIAIDTLFASGGIRKNPLLMQLYADVTGRPVVIP-ASDQAVLLGAAMFA 476 (544)
T ss_pred CCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCeeeEEEecCCcccCHHHHHHHHHhcCCeEEee-cccchhhhHHHHHH
Confidence 34444445555555554433333333322234578999999999999999999999999877665 66789999999999
Q ss_pred hhcc
Q 047849 400 GILR 403 (651)
Q Consensus 400 ~~l~ 403 (651)
+.-.
T Consensus 477 avAa 480 (544)
T COG1069 477 AVAA 480 (544)
T ss_pred HHHh
Confidence 8644
|
|
| >TIGR03281 methan_mark_12 putative methanogenesis marker protein 12 | Back alignment and domain information |
|---|
Probab=88.63 E-value=5.6 Score=40.80 Aligned_cols=178 Identities=16% Similarity=0.155 Sum_probs=93.9
Q ss_pred eecchHHHhhhhccccCC--CeEEEEEeCCcceEEEEEE--EecccccccC-CCCccCHH--HHHHHHHHHHHh-hhhcC
Q 047849 223 IINEPTAASLSYGMNNKE--GLIAVFDLGGGTFDVSILE--ISNGVFEDEG-IDLSKDRL--ALQRLREAAEKA-KIELS 294 (651)
Q Consensus 223 li~Ep~AAAl~y~~~~~~--~~vlVvD~GggT~Dvsv~~--~~~~~~~~~~-~~~~~~~~--~~~~L~~~~e~~-K~~Ls 294 (651)
-+..|+=..++|...... ++++|.|+-.-|..+.|-. +-++.=-.-+ .-+...+. .+.++....+.- -..+|
T Consensus 128 H~aSpEKi~iay~a~~~~~~~~~ivsDiSSNTVtlaVk~GKIVggidaciGAPG~lhGpLDlE~ir~Id~g~~tan~aFs 207 (326)
T TIGR03281 128 HIASPEKVSIAYNAYCLTGFKDFIVSDISSNTVTLLIKDGKIIGGFDACVGAPGVLHGPLDLEAIRNIDAGKKTANEAFS 207 (326)
T ss_pred ccCCHHHHHHHHHHHHHcCCCCEEEEecCCCeEEEEEECCEEEccccccccCcccccCcccHHHHHhcccCcccHHHHHh
Confidence 356777777877654432 4899999999988887653 1111000000 00001111 122222221111 12232
Q ss_pred CCceeEEEecceeccCCCCeeEEEEecHHHHHHHHH---HHHHHHHHHHHHHH---HHcCCCCCCCCeEEEecC--ccCc
Q 047849 295 STTQTDINLPFITADASGAKHLNITLTRSKFETLVN---NLIERTRAPCKNCL---KDANITTKDVDEVLLVGG--MTRV 366 (651)
Q Consensus 295 ~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~---~~~~~i~~~i~~~l---~~a~~~~~~i~~VvLvGG--ss~i 366 (651)
..--..+. .++. ....+++||.+.+. +....+..++.-+. ..........+.|+|.|- +.+.
T Consensus 208 ~aGa~kIa--~~~~--------~~~~~~eE~~~~~~~~e~~~lA~dal~~~vameIasLl~l~~~~~~IvLSGs~g~~r~ 277 (326)
T TIGR03281 208 HAGAVKIA--CADK--------GVENAKEEILNNYNGDEPGRLALDSLAMSVAMEIASLGLLDCKEAGVVLAGSGGTLRE 277 (326)
T ss_pred hcCeeEEe--cccc--------cccCCHHHHHHHhccChhHHHHHHHHHHHHHHHHHhheeccCCCCcEEEeCcchhccC
Confidence 22222221 1111 12566777776652 22222222222222 221111123348999986 9999
Q ss_pred H-hHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEE
Q 047849 367 P-KVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLL 412 (651)
Q Consensus 367 p-~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~ 412 (651)
| .+++.|++.|..++. .++. +..|.|+|+.|.-+.+..++++=+
T Consensus 278 ~~~v~~~I~~~L~~~V~-~L~~-ksAA~G~AiIA~dI~gGk~~iLGi 322 (326)
T TIGR03281 278 PINFSGKIKRVLSCKVL-VLDS-ESAAIGLALIAEDIFSGKREILGI 322 (326)
T ss_pred chHHHHHHHHHhCCCeE-Eecc-hhhhhhHHHHHHHHhCCcceEeee
Confidence 9 999999999985443 2333 788999999998888766765433
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. |
| >PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis | Back alignment and domain information |
|---|
Probab=88.50 E-value=1.5 Score=44.88 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHh-----cCCCCCcCCccchheehhHHHh
Q 047849 327 TLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIF-----GKSPSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 327 ~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f-----~~~~~~~~~p~~aVA~GAa~~a 399 (651)
++++...+.+.+.+..++.+...... .|+|+||....+.+++.+++.+ ..++..+..|....|.||+++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 34455555566666666666543322 2999999999977777664444 2345567889999999999986
|
The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A. |
| >PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 | Back alignment and domain information |
|---|
Probab=88.02 E-value=1.8 Score=44.75 Aligned_cols=51 Identities=25% Similarity=0.390 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCceEEeecchHHHhhhhc-cc--c-CCCeEEEEEeCCcceEEEEEE
Q 047849 208 ATKDAGRIAGLDVQRIINEPTAASLSYG-MN--N-KEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 208 ~l~~Aa~~AGl~~~~li~Ep~AAAl~y~-~~--~-~~~~vlVvD~GggT~Dvsv~~ 259 (651)
.+...-+..|+++ .+|+..+=|.+.|. .. . ..+..+|+|+|||++.+++++
T Consensus 76 ~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~ 130 (285)
T PF02541_consen 76 FLDRIKKETGIDI-EIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFE 130 (285)
T ss_dssp HHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEE
T ss_pred HHHHHHHHhCCce-EEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEE
Confidence 3445556679988 66766665555441 11 1 234899999999999999986
|
6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A. |
| >COG5026 Hexokinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.67 E-value=3.6 Score=44.11 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=19.4
Q ss_pred CCCCCcEEEEEcCCceEEEEEEe
Q 047849 53 KPAGNDIIGIDLGTTNSCVALME 75 (651)
Q Consensus 53 ~~~~~~vvGID~GTt~s~va~~~ 75 (651)
......++.||||.||..++.+.
T Consensus 71 g~e~g~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 71 GNESGSVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred CCCCCCEEEEecCCceEEEEEEE
Confidence 34567899999999999999885
|
|
| >PLN02666 5-oxoprolinase | Back alignment and domain information |
|---|
Probab=85.99 E-value=2.5 Score=52.32 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCC-CCCcCCccchheehhHH
Q 047849 337 RAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKS-PSKGVNPDEAVALGAAI 397 (651)
Q Consensus 337 ~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~-~~~~~~p~~aVA~GAa~ 397 (651)
.+.|+......|+++.+. .++..||.+ |...-.|.+.+|.+ +..+.+|.-..|+|+++
T Consensus 472 ~~air~i~~~~G~dpr~~-~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 472 CRPIRQLTEMKGYETANH-ALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred HHHHHHHHHHcCCCCCCc-eEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 334455555556655432 344455554 88888899999976 77788888888999975
|
|
| >KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=85.24 E-value=0.72 Score=50.28 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCCCCC--CCCeEEEecCccCcHhHHHHHHHHh-cC-------CCCCcCCccchheehhHHHhhhc
Q 047849 336 TRAPCKNCLKDANITTK--DVDEVLLVGGMTRVPKVQEVVSEIF-GK-------SPSKGVNPDEAVALGAAIQGGIL 402 (651)
Q Consensus 336 i~~~i~~~l~~a~~~~~--~i~~VvLvGGss~ip~i~~~l~~~f-~~-------~~~~~~~p~~aVA~GAa~~a~~l 402 (651)
+.+++...|...-.+-. .+..|+|+||.|.+|.+.+.|++.+ +. .+....||...+=+||+.+|+..
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~ 615 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANP 615 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCc
Confidence 34445555554322222 2789999999999999999999876 32 24557799999999999999863
|
|
| >PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length | Back alignment and domain information |
|---|
Probab=84.61 E-value=11 Score=39.58 Aligned_cols=53 Identities=26% Similarity=0.446 Sum_probs=39.0
Q ss_pred CCCCeEEEecCccCcHhHHHHHHHHhcCC---CCCcCCc----cchheehhHHHhhhccC
Q 047849 352 KDVDEVLLVGGMTRVPKVQEVVSEIFGKS---PSKGVNP----DEAVALGAAIQGGILRG 404 (651)
Q Consensus 352 ~~i~~VvLvGGss~ip~i~~~l~~~f~~~---~~~~~~p----~~aVA~GAa~~a~~l~~ 404 (651)
.+++.|+|.|-.+++|-+.+.+++.|+.- ....+.+ ....|.|||+.|.-+.+
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~glaG 318 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANGLAG 318 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhhhhc
Confidence 46789999999999999998888888431 1122222 23478999999987776
|
The function of this family is unknown. |
| >TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) | Back alignment and domain information |
|---|
Probab=82.94 E-value=19 Score=37.59 Aligned_cols=90 Identities=19% Similarity=0.239 Sum_probs=49.9
Q ss_pred hhhHHHHHHHHHHHHHHHh--hCCCCCeEEEEecCCCCHHH------------HHHHHHHH-HHcCCceEEeecchHHHh
Q 047849 167 PSQIGAFVLTKMKETAESY--LGKSVSKAVITVPAYFNDAQ------------RQATKDAG-RIAGLDVQRIINEPTAAS 231 (651)
Q Consensus 167 ~eev~a~~L~~l~~~a~~~--~~~~~~~~VITVPa~f~~~q------------r~~l~~Aa-~~AGl~~~~li~Ep~AAA 231 (651)
++++...+.+.+.+..++. ...++..+.|++|...+... ...+.+.. +..|++ +.+.|+..|+|
T Consensus 33 ~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~a 111 (318)
T TIGR00744 33 PETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAAA 111 (318)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHHH
Confidence 4444444444444433322 12345667888887553211 11233332 334776 47999999999
Q ss_pred hhhccc---cCCCeEEEEEeCCcceEEEEE
Q 047849 232 LSYGMN---NKEGLIAVFDLGGGTFDVSIL 258 (651)
Q Consensus 232 l~y~~~---~~~~~vlVvD~GggT~Dvsv~ 258 (651)
++-... +..++++++.+|.|- -.+++
T Consensus 112 laE~~~g~~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 112 LGEYKKGAGKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHhcccCCCCcEEEEEeCCcc-EEEEE
Confidence 864332 222488999999875 55555
|
This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution. |
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
Probab=82.50 E-value=2.1 Score=43.87 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecC-ccCcHhHHHHHHHHhc---CCCCCcCCccchheehhHH
Q 047849 326 ETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGG-MTRVPKVQEVVSEIFG---KSPSKGVNPDEAVALGAAI 397 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGG-ss~ip~i~~~l~~~f~---~~~~~~~~p~~aVA~GAa~ 397 (651)
|+++..++.-+...|-..-. ..-....+..|+++|| .+..|.+++.+...+. .+...+.|+...+|+||++
T Consensus 204 eDiAaSLl~mV~~nIg~lA~-~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 204 EDIAASLLGLIGNNIGQIAY-LCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45555555544443322111 1112346789999999 6789999999998874 5567788999999999986
|
This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA). |
| >COG0554 GlpK Glycerol kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=81.93 E-value=3.1 Score=45.19 Aligned_cols=87 Identities=22% Similarity=0.302 Sum_probs=61.5
Q ss_pred EEEecHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheeh
Q 047849 317 NITLTRS-KFETLVNNLIERTRAPCKNCLKDANITTK-DVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALG 394 (651)
Q Consensus 317 ~~~itr~-~fe~l~~~~~~~i~~~i~~~l~~a~~~~~-~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~G 394 (651)
-+-|||. .-+.+++..++.+.=..+++++...-+.. .++.+-+=||.++..++.+...+.+|.++.++.+. |..|+|
T Consensus 364 i~Gltrgt~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~~-EtTAlG 442 (499)
T COG0554 364 IFGLTRGTTKAHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADILGVPVERPVVL-ETTALG 442 (499)
T ss_pred EEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHhCCeeeccccc-hhhHHH
Confidence 3455554 23456666666665555555554222211 57888899999999999999999999988776655 568999
Q ss_pred hHHHhhhccC
Q 047849 395 AAIQGGILRG 404 (651)
Q Consensus 395 Aa~~a~~l~~ 404 (651)
||+.|..-.+
T Consensus 443 aA~lAGla~G 452 (499)
T COG0554 443 AAYLAGLAVG 452 (499)
T ss_pred HHHHHhhhhC
Confidence 9999987554
|
|
| >PRK00976 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.06 E-value=7.7 Score=40.53 Aligned_cols=57 Identities=26% Similarity=0.330 Sum_probs=43.1
Q ss_pred CCCeEEEecCccCcH--hHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEE
Q 047849 353 DVDEVLLVGGMTRVP--KVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLL 411 (651)
Q Consensus 353 ~i~~VvLvGGss~ip--~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~ 411 (651)
+++.|+|-||.++.+ .+.+.+++.+... ...-..++-++|||+.|..+.+..++++=
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~--~a~LG~dAGaiGAA~iA~~i~~G~~~ilg 321 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKK--VLVLGKESAAIGLALIARDIFNGKKDILG 321 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhccc--ccccCCchHHHHHHHHHHHHhCCCceeee
Confidence 467999999999998 7888888888543 22334578999999998877665566543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 651 | ||||
| 2kho_A | 605 | Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAP | 0.0 | ||
| 4b9q_A | 605 | Open Conformation Of Atp-Bound Hsp70 Homolog Dnak L | 0.0 | ||
| 2v7y_A | 509 | Crystal Structure Of The Molecular Chaperone Dnak F | 1e-178 | ||
| 3c7n_B | 554 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 1e-141 | ||
| 1yuw_A | 554 | Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214 | 1e-141 | ||
| 2v7z_A | 543 | Crystal Structure Of The 70-Kda Heat Shock Cognate | 1e-139 | ||
| 1dkg_D | 383 | Crystal Structure Of The Nucleotide Exchange Factor | 1e-129 | ||
| 3iuc_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 2e-96 | ||
| 3ldl_A | 384 | Crystal Structure Of Human Grp78 (70kda Heat Shock | 2e-95 | ||
| 3gl1_A | 387 | Crystal Structure Of Atpase Domain Of Ssb1 Chaperon | 5e-90 | ||
| 3qfp_A | 390 | Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D | 6e-89 | ||
| 3qfu_A | 394 | Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE | 8e-89 | ||
| 3kvg_A | 400 | Crystal Structure Of The N-Terminal Domain Of Hsp70 | 8e-89 | ||
| 2qw9_B | 394 | Crystal Structure Of Bovine Hsc70 (1-394aa)in The A | 8e-88 | ||
| 2qwn_A | 394 | Crystal Structure Of Disulfide-Bond-Crosslinked Com | 1e-86 | ||
| 1hpm_A | 386 | How Potassium Affects The Activity Of The Molecular | 1e-86 | ||
| 1bup_A | 386 | T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot | 2e-86 | ||
| 1ngb_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 3e-86 | ||
| 3fe1_A | 403 | Crystal Structure Of The Human 70kda Heat Shock Pro | 3e-86 | ||
| 1atr_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 4e-86 | ||
| 1nga_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 4e-86 | ||
| 1ngd_A | 386 | Structural Basis Of The 70-kilodalton Heat Shock Co | 5e-86 | ||
| 1ngf_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 5e-86 | ||
| 1ngh_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 5e-86 | ||
| 1ats_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 5e-86 | ||
| 1ngg_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 6e-86 | ||
| 1ngc_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 6e-86 | ||
| 1nge_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 6e-86 | ||
| 1ba0_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 7e-86 | ||
| 1hx1_A | 400 | Crystal Structure Of A Bag Domain In Complex With T | 3e-85 | ||
| 3fzf_A | 381 | Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP | 3e-85 | ||
| 3cqx_A | 386 | Chaperone Complex Length = 386 | 3e-85 | ||
| 1ba1_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 4e-85 | ||
| 1kaz_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71e | 8e-85 | ||
| 2e88_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 9e-85 | ||
| 2e8a_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 1e-84 | ||
| 3i33_A | 404 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-84 | ||
| 3a8y_A | 392 | Crystal Structure Of The Complex Between The Bag5 B | 1e-84 | ||
| 3jxu_A | 409 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-84 | ||
| 1kax_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71m | 1e-84 | ||
| 1kay_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71a | 1e-84 | ||
| 3gdq_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-84 | ||
| 2bup_A | 381 | T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 | 2e-84 | ||
| 1hjo_A | 380 | Atpase Domain Of Human Heat Shock 70kda Protein 1 L | 8e-84 | ||
| 3d2f_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 9e-84 | ||
| 1s3x_A | 382 | The Crystal Structure Of The Human Hsp70 Atpase Dom | 1e-83 | ||
| 1qqm_A | 378 | D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-83 | ||
| 1qqo_A | 378 | E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 3e-83 | ||
| 1qqn_A | 378 | D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 2e-82 | ||
| 4fsv_A | 387 | Crystal Structure Of A Heat Shock 70kda Protein 2 ( | 6e-82 | ||
| 3d2e_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 8e-82 | ||
| 1dky_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 2e-62 | ||
| 3dpo_A | 219 | Crystal Structure Of The Substrate Binding Domain O | 3e-62 | ||
| 3n8e_A | 182 | Substrate Binding Domain Of The Human Heat Shock 70 | 4e-62 | ||
| 1dkx_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 5e-62 | ||
| 1bpr_A | 191 | Nmr Structure Of The Substrate Binding Domain Of Dn | 7e-62 | ||
| 3dqg_A | 151 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 1e-61 | ||
| 1ckr_A | 159 | High Resolution Solution Structure Of The Heat Shoc | 3e-48 | ||
| 1q5l_A | 135 | Nmr Structure Of The Substrate Binding Domain Of Dn | 3e-45 | ||
| 3h0x_A | 152 | Crystal Structure Of Peptide-Binding Domain Of Kar2 | 6e-45 | ||
| 1dg4_A | 115 | Nmr Structure Of The Substrate Binding Domain Of Dn | 7e-45 | ||
| 3d2f_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 7e-44 | ||
| 3dob_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 1e-43 | ||
| 3c7n_A | 668 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 1e-43 | ||
| 2qxl_A | 658 | Crystal Structure Analysis Of Sse1, A Yeast Hsp110 | 1e-43 | ||
| 3d2e_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 5e-43 | ||
| 2op6_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 1e-42 | ||
| 1u00_A | 227 | Hsca Substrate Binding Domain Complexed With The Is | 3e-35 | ||
| 4gni_A | 409 | Structure Of The Ssz1 Atpase Bound To Atp And Magne | 7e-29 | ||
| 1xqs_C | 191 | Crystal Structure Of The Hspbp1 Core Domain Complex | 3e-24 | ||
| 1jcf_A | 344 | Mreb From Thermotoga Maritima, Trigonal Length = 34 | 9e-07 | ||
| 1jce_A | 344 | Mreb From Thermotoga Maritima Length = 344 | 8e-06 |
| >pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE (1-605) Complexed With Adp And Substrate Length = 605 | Back alignment and structure |
|
| >pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak Length = 605 | Back alignment and structure |
|
| >pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis State Length = 509 | Back alignment and structure |
|
| >pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554 | Back alignment and structure |
|
| >pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554 | Back alignment and structure |
|
| >pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543 | Back alignment and structure |
|
| >pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383 | Back alignment and structure |
|
| >pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408 | Back alignment and structure |
|
| >pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384 | Back alignment and structure |
|
| >pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387 | Back alignment and structure |
|
| >pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390 | Back alignment and structure |
|
| >pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400 | Back alignment and structure |
|
| >pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394 | Back alignment and structure |
|
| >pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386 | Back alignment and structure |
|
| >pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386 | Back alignment and structure |
|
| >pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403 | Back alignment and structure |
|
| >pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386 | Back alignment and structure |
|
| >pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400 | Back alignment and structure |
|
| >pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381 | Back alignment and structure |
|
| >pdb|3CQX|A Chain A, Chaperone Complex Length = 386 | Back alignment and structure |
|
| >pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386 | Back alignment and structure |
|
| >pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381 | Back alignment and structure |
|
| >pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391 | Back alignment and structure |
|
| >pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391 | Back alignment and structure |
|
| >pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404 | Back alignment and structure |
|
| >pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392 | Back alignment and structure |
|
| >pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409 | Back alignment and structure |
|
| >pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381 | Back alignment and structure |
|
| >pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408 | Back alignment and structure |
|
| >pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381 | Back alignment and structure |
|
| >pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380 | Back alignment and structure |
|
| >pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382 | Back alignment and structure |
|
| >pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382 | Back alignment and structure |
|
| >pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387 | Back alignment and structure |
|
| >pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382 | Back alignment and structure |
|
| >pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 2 Native Crystals Length = 219 | Back alignment and structure |
|
| >pdb|3DPO|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E. Coli Dnak In Complex With A Short Pyrrhocoricin-Derived Inhibitor Peptide Length = 219 | Back alignment and structure |
|
| >pdb|3N8E|A Chain A, Substrate Binding Domain Of The Human Heat Shock 70kda Prote (Mortalin) Length = 182 | Back alignment and structure |
|
| >pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 1 Selenomethionyl Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak, Minimized Average Structure Length = 191 | Back alignment and structure |
|
| >pdb|3DQG|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F, Mitochondrial Precursor, From Caenorhabditis Elegans. Length = 151 | Back alignment and structure |
|
| >pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock Cognate-70 Kd Substrate Binding Domain Obtained By Multidimensional Nmr Techniques Length = 159 | Back alignment and structure |
|
| >pdb|1Q5L|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak Bound To The Peptide Nrllltg Length = 135 | Back alignment and structure |
|
| >pdb|3H0X|A Chain A, Crystal Structure Of Peptide-Binding Domain Of Kar2 Protein From Saccharomyces Cerevisiae Length = 152 | Back alignment and structure |
|
| >pdb|1DG4|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak In The Apo Form Length = 115 | Back alignment and structure |
|
| >pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675 | Back alignment and structure |
|
| >pdb|3DOB|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F44e5.5 From C.Elegans. Length = 152 | Back alignment and structure |
|
| >pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668 | Back alignment and structure |
|
| >pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658 | Back alignment and structure |
|
| >pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675 | Back alignment and structure |
|
| >pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D Precursor From C.Elegans Length = 152 | Back alignment and structure |
|
| >pdb|1U00|A Chain A, Hsca Substrate Binding Domain Complexed With The Iscu Recognition Peptide Elppvkihc Length = 227 | Back alignment and structure |
|
| >pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409 | Back alignment and structure |
|
| >pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 191 | Back alignment and structure |
|
| >pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal Length = 344 | Back alignment and structure |
|
| >pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima Length = 344 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 651 | |||
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 0.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 0.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 0.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 0.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 0.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 0.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 0.0 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 1e-132 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 1e-122 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 1e-122 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 1e-102 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 1e-91 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 3e-90 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 4e-90 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 9e-88 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 1e-32 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 2e-27 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 3e-21 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-18 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 9e-11 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 1e-10 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 4e-09 | |
| 2p32_A | 120 | Heat shock 70 kDa protein A; three-helix bundle, c | 5e-07 | |
| 3lof_A | 113 | Heat shock 70 kDa protein 1; structural genomics, | 4e-06 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 1e-04 |
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 1066 bits (2759), Expect = 0.0
Identities = 351/599 (58%), Positives = 448/599 (74%), Gaps = 35/599 (5%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
IIGIDLGTTNSCVA+M+G P+V+EN+EG RTTPS++A+ Q GE LVG PAKRQAVTNP
Sbjct: 4 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQ 63
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKM 178
NTLF KRLIGR+F D + Q+++ ++ +KI+ A NGDAWVE GQ+ +P QI A VL KM
Sbjct: 64 NTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKM 123
Query: 179 KETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNN 238
K+TAE YLG+ V++AVITVPAYFNDAQRQATKDAGRIAGL+V+RIINEPTAA+L+YG++
Sbjct: 124 KKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK 183
Query: 239 KEG--LIAVFDLGGGTFDVSILEISN----GVFE-------------------------- 266
G IAV+DLGGGTFD+SI+EI FE
Sbjct: 184 GTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEE 243
Query: 267 ---DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRS 323
D+GIDL D LA+QRL+EAAEKAKIELSS QTD+NLP+ITADA+G KH+NI +TR+
Sbjct: 244 FKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRA 303
Query: 324 KFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSK 383
K E+LV +L+ R+ P K L+DA ++ D+D+V+LVGG TR+P VQ+ V+E FGK P K
Sbjct: 304 KLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRK 363
Query: 384 GVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKS 443
VNPDEAVA+GAA+QGG+L GDVK++LLLDVTPLSLGIET+GG+ T LI +NTTIPTK S
Sbjct: 364 DVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHS 423
Query: 444 QVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGI 503
QVFSTA DNQ+ V I VLQGER+ A+DNKSLG+F L GI PAPRGMPQIEVTFDIDA+GI
Sbjct: 424 QVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGI 483
Query: 504 VTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTI 563
+ VSAKDK +GKEQ+ITI++S GL+EDEI+KMV++AE +A+ D + L+ RNQ D +
Sbjct: 484 LHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLL 543
Query: 564 YSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHM 622
+S K + E +K+P++ IE A+ L A+ ++ I++K+ + K+ +
Sbjct: 544 HSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIA 602
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 912 bits (2360), Expect = 0.0
Identities = 320/532 (60%), Positives = 392/532 (73%), Gaps = 56/532 (10%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
IIGIDLGTTNSCVA++EG KVI N EG+RTTPSVVAF + GE LVG AKRQA+TNP
Sbjct: 4 IIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAF-KNGERLVGEVAKRQAITNP- 61
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKM 178
NT+ KR +G + VE G+QY+P +I A +L +
Sbjct: 62 NTIISIKRHMGTDY------------------------KVEIEGKQYTPQEISAIILQYL 97
Query: 179 KETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNN 238
K AE YLG+ V++AVITVPAYFNDAQRQATKDAGRIAGL+V+RIINEPTAA+L+YG++
Sbjct: 98 KSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLDK 157
Query: 239 KEG-LIAVFDLGGGTFDVSILEISNGVFE-----------------------------DE 268
+E I V+DLGGGTFDVSILE+ +GVFE +
Sbjct: 158 EEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEH 217
Query: 269 GIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETL 328
GIDLSKD++ALQRL++AAEKAK ELS TQT I+LPFI+A+ +G HL +TLTR+KFE L
Sbjct: 218 GIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEEL 277
Query: 329 VNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPD 388
+L+ERT P + L+DA +T D+D+V+LVGG TR+P VQE + GK P KGVNPD
Sbjct: 278 SAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPD 337
Query: 389 EAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFST 448
E VA+GAAIQGG++ G+VK+++LLDVTPLSLGIET+GG+FT+LI RNTTIPT KSQVF+T
Sbjct: 338 EVVAIGAAIQGGVIAGEVKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFTT 397
Query: 449 AADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSA 508
AADNQT V I VLQGER MA+DNKSLG F+L GIPPAPRG+PQIEVTFDIDANGIV V A
Sbjct: 398 AADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIVHVRA 457
Query: 509 KDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQAD 560
KD T KEQ ITI+SS GLSE+EI++M+KEAE +A+ D +RK ++RN+AD
Sbjct: 458 KDLGTNKEQSITIKSSSGLSEEEIQRMIKEAEENAEADRKRKEAAELRNEAD 509
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 868 bits (2246), Expect = 0.0
Identities = 267/553 (48%), Positives = 366/553 (66%), Gaps = 46/553 (8%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
+GIDLGTT SCV + + ++I N +G+RTTPS VAF E L+G AK Q NPT
Sbjct: 6 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPT 64
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAP-NGDAWVEANGQ--QYSPSQIGAFVL 175
NT+F KRLIGR+FDD Q +M+ + +V VE G+ + P ++ + VL
Sbjct: 65 NTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVL 124
Query: 176 TKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYG 235
TKMKE AE+YLGK+V+ AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAA+++YG
Sbjct: 125 TKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 184
Query: 236 MNNKEGL---IAVFDLGGGTFDVSILEISNGVFE-------------------------- 266
++ K G + +FDLGGGTFDVSIL I+ G+FE
Sbjct: 185 LDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNHFIAE 244
Query: 267 ---DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRS 323
D+S+++ A++RLR A E+AK LSS+TQ I + + ++TR+
Sbjct: 245 FKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSITRA 300
Query: 324 KFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIF-GKSPS 382
+FE L +L T P + L+DA + + +++LVGG TR+PK+Q+++ + F GK +
Sbjct: 301 RFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELN 360
Query: 383 KGVNPDEAVALGAAIQGGILRGD----VKELLLLDVTPLSLGIETLGGIFTRLINRNTTI 438
K +NPDEAVA GAA+Q IL GD V++LLLLDVTPLSLGIET GG+ T LI RNTTI
Sbjct: 361 KSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTI 420
Query: 439 PTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDI 498
PTK++Q F+T +DNQ V I+V +GER M DN LG+FEL GIPPAPRG+PQIEVTFDI
Sbjct: 421 PTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDI 480
Query: 499 DANGIVTVSAKDKATGKEQQITIRSSGG-LSEDEIEKMVKEAELHAQRDNERKALIDIRN 557
DANGI+ VSA DK+TGKE +ITI + G LS+++IE+MV+EAE + D +++ + +N
Sbjct: 481 DANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKN 540
Query: 558 QADTTIYSIEKSL 570
++ ++++ ++
Sbjct: 541 SLESYAFNMKATV 553
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 780 bits (2017), Expect = 0.0
Identities = 149/654 (22%), Positives = 268/654 (40%), Gaps = 75/654 (11%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
G+DLG NS +A+ + ++ N +R+TPSVV F K +G K + +N
Sbjct: 4 PFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPK-NRYLGETGKNKQTSNIK 62
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEAN----GQQYSPSQIGAFV 174
NT+ KR+IG + P ++E + + K+V + E +S +Q+ A
Sbjct: 63 NTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMF 122
Query: 175 LTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSY 234
+ K+K+T + +++ I VP ++ + QR DA RIAGL+ RI+N+ TAA +SY
Sbjct: 123 IDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSY 182
Query: 235 GMNNKEGL--------IAVFDLGGGTFDVSILEISNGVFE-------------------- 266
G+ + +A D+G ++ SI+ G +
Sbjct: 183 GIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAIT 242
Query: 267 ---------DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLN 317
ID+ ++ A R+ AAEK K LS+ T PF ++
Sbjct: 243 EHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNA----PFSVESVMNDVDVS 298
Query: 318 ITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIF 377
L+R + E LV L+ER P L A ++ ++VD V ++GG TR+P +++ +SE F
Sbjct: 299 SQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF 358
Query: 378 GKSPSKGVNPDEAVALGAAIQGGILRGD--VKELLLLDVTPLSLGIETLGGI----FTRL 431
GK S +N DEA+A GAA I V+ D+ P S+ + +
Sbjct: 359 GKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDIHPYSVSYSWDKQVEDEDHMEV 418
Query: 432 INRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGI--PPAPRGM 489
++ P+ K + D + + + +E+ G+ P +
Sbjct: 419 FPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEGQDSV 476
Query: 490 PQIEVTFDIDANGIVTVS----------AKDKATGKEQQITIR-SSGGLSEDEIEKMVKE 538
P +++ D +G+ T+ D T K+ +TI + GL ++ +++++
Sbjct: 477 P-VKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEK 535
Query: 539 AELHAQRDNERKALIDIRNQADTTIYSIEKSL-GEYREKIPSEVAKEIEDAVADLRKAMG 597
+D D +N + IY++ L EY +++ + + +
Sbjct: 536 ENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLY 595
Query: 598 ADNVDDIKSKLDAANKAVSKIGQ------HMAGGSGGGAASGGSQGGEQTPEAE 645
+ D IK+K A + ++ +G A + + AE
Sbjct: 596 DEGFDSIKAKYIAKYEELASLGNIIRGRYLAKEEEKKQAIRSKQEASQMAAMAE 649
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 690 bits (1782), Expect = 0.0
Identities = 227/379 (59%), Positives = 284/379 (74%), Gaps = 35/379 (9%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
IIGIDLGTTNSCVA+M+G P+V+EN+EG RTTPS++A+ Q GE LVG PAKRQAVTNP
Sbjct: 4 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQ 63
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKM 178
NTLF KRLIGR+F D + Q+++ ++ +KI+ A NGDAWVE GQ+ +P QI A VL KM
Sbjct: 64 NTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKM 123
Query: 179 KETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNN 238
K+TAE YLG+ V++AVITVPAYFNDAQRQATKDAGRIAGL+V+RIINEPTAA+L+YG++
Sbjct: 124 KKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK 183
Query: 239 KEG--LIAVFDLGGGTFDVSILEIS----NGVFE-------------------------- 266
G IAV+DLGGGTFD+SI+EI FE
Sbjct: 184 GTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEE 243
Query: 267 ---DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRS 323
D+GIDL D LA+QRL+EAAEKAKIELSS QTD+NLP+ITADA+G KH+NI +TR+
Sbjct: 244 FKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRA 303
Query: 324 KFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSK 383
K E+LV +L+ R+ K L+DA ++ D+D+V+LVGG TR+P VQ+ V+E FGK P K
Sbjct: 304 KLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRK 363
Query: 384 GVNPDEAVALGAAIQGGIL 402
VNPDEAVA+GAA+QGG+L
Sbjct: 364 DVNPDEAVAIGAAVQGGVL 382
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 552 bits (1426), Expect = 0.0
Identities = 172/385 (44%), Positives = 231/385 (60%), Gaps = 43/385 (11%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
IGIDLGTT SCV + + ++I N +G+RTTPS VAF E L+G AK Q NPT
Sbjct: 25 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPT 83
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIV-RAPNGDAWVEANGQ--QYSPSQIGAFVL 175
NT+F KRLIGRKF+D Q +M+ +++V VE G+ + P +I + VL
Sbjct: 84 NTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVL 143
Query: 176 TKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYG 235
TKMKE AE+YLG V AVITVPAYFND+QRQATKDAG I GL+V RIINEPTAA+++YG
Sbjct: 144 TKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYG 203
Query: 236 MNNKEGL-----IAVFDLGGGTFDVSILEISNGVFE------------------------ 266
++ K + +FDLGGGTFDVSIL I +G+FE
Sbjct: 204 LDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHLA 263
Query: 267 -----DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLT 321
D+ ++ A++RLR A E+AK LSS+TQ I + + ++T
Sbjct: 264 EEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGV----DFYTSIT 319
Query: 322 RSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIF-GKS 380
R++FE L +L T P + L+DA + + E++LVGG TR+PK+Q+++ + F GK
Sbjct: 320 RARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKE 379
Query: 381 PSKGVNPDEAVALGAAIQGGILRGD 405
+K +NPDEAVA GAA+Q IL GD
Sbjct: 380 LNKSINPDEAVAYGAAVQAAILIGD 404
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A Length = 219 | Back alignment and structure |
|---|
Score = 385 bits (992), Expect = e-132
Identities = 119/214 (55%), Positives = 159/214 (74%)
Query: 409 LLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMA 468
+LLLDVTPLSLGIET+GG+ T LI +NTTIPTK SQVFSTA DNQ+ V I VLQGER+ A
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 469 SDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLS 528
+DNKSLG+F L GI PAPRGMPQIEVTFDIDA+GI+ VSAKDK +GKEQ+ITI++S GL+
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN 120
Query: 529 EDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIEDA 588
EDEI+KMV++AE +A+ D + + L+ RNQ D ++S K + E +K+P++ IE A
Sbjct: 121 EDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESA 180
Query: 589 VADLRKAMGADNVDDIKSKLDAANKAVSKIGQHM 622
+ L A+ ++ I++K+ + K+ +
Sbjct: 181 LTALETALKGEDKAAIEAKMQELAQVSQKLMEIA 214
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} Length = 182 | Back alignment and structure |
|---|
Score = 359 bits (924), Expect = e-122
Identities = 117/173 (67%), Positives = 136/173 (78%)
Query: 398 QGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVG 457
G L + +DVTPLSLGIETLGG+FT+LINRNTTIPTKKSQVFSTAAD QTQV
Sbjct: 9 SGVDLGTENLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVE 68
Query: 458 IKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKATGKEQ 517
IKV QGEREMA DNK LG+F L+GIPPAPRG+PQIEVTFDIDANGIV VSAKDK TG+EQ
Sbjct: 69 IKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQ 128
Query: 518 QITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSL 570
QI I+SSGGLS+D+IE MVK AE +A+ D +K ++ N A+ I+ E +
Sbjct: 129 QIVIQSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKM 181
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Length = 227 | Back alignment and structure |
|---|
Score = 361 bits (928), Expect = e-122
Identities = 82/224 (36%), Positives = 130/224 (58%)
Query: 412 LDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDN 471
+DV PLSLG+ET+GG+ ++I RNTTIP ++Q F+T D QT + I V+QGERE+ D
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 472 KSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSEDE 531
+SL F L GIP P G I VTF +DA+G+++V+A +K+TG E I ++ S GL++ E
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE 120
Query: 532 IEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIEDAVAD 591
I M+K++ +A++D + + L + + +A + S+ +L + + + I+DA A
Sbjct: 121 IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAH 180
Query: 592 LRKAMGADNVDDIKSKLDAANKAVSKIGQHMAGGSGGGAASGGS 635
L + D+VD I+ + +K S A G S
Sbjct: 181 LSEVAQGDDVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKGHS 224
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} Length = 151 | Back alignment and structure |
|---|
Score = 306 bits (787), Expect = e-102
Identities = 113/148 (76%), Positives = 130/148 (87%)
Query: 413 DVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNK 472
DVTPLSLGIETLGGI T+LI RNTTIPTKKSQVFSTAAD QTQV IKV QGEREMA+ NK
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 473 SLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSEDEI 532
LG+F LVGIPPAPRG+PQ+EVTFDIDANGIV VSA+D+ TGKEQQI I+SSGGLS+D+I
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQI 123
Query: 533 EKMVKEAELHAQRDNERKALIDIRNQAD 560
E M+KEAE +A D +RK L+++ NQA+
Sbjct: 124 ENMIKEAEKNAAEDAKRKELVEVINQAE 151
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 279 bits (716), Expect = 1e-91
Identities = 83/149 (55%), Positives = 112/149 (75%), Gaps = 1/149 (0%)
Query: 413 DVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNK 472
DV PL+LGIET+GG+ T+LI RNT IPTKKSQVFSTAAD+Q+ V I + +GER M DN
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 473 SLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGG-LSEDE 531
LG F++ GIPPAPRG+PQIEVTF+ID NGI+ VSA+DK TG + ++TI + LS ++
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
Query: 532 IEKMVKEAELHAQRDNERKALIDIRNQAD 560
IE+M+ +A+ A D +K ++ RN+ +
Sbjct: 124 IERMINDADKFAADDQAQKEKVESRNELE 152
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A Length = 152 | Back alignment and structure |
|---|
Score = 275 bits (707), Expect = 3e-90
Identities = 91/149 (61%), Positives = 112/149 (75%), Gaps = 1/149 (0%)
Query: 413 DVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNK 472
DV L+LGIET GG+ T LI RNT IPTKKSQ+FSTA DNQ V IKV +GER M+ DN
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 473 SLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGG-LSEDE 531
LG+FEL GIPPAPRG+PQIEVTF +DANGI+ VSA DK TGK + ITI + G L+++E
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
Query: 532 IEKMVKEAELHAQRDNERKALIDIRNQAD 560
I++MV+EAE A D KA ++ RN+ +
Sbjct: 124 IDRMVEEAEKFASEDASIKAKVESRNKLE 152
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 275 bits (706), Expect = 4e-90
Identities = 86/149 (57%), Positives = 111/149 (74%), Gaps = 1/149 (0%)
Query: 413 DVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNK 472
DV PLSLGIET GG+ T LI+RNT IPTK + F+T ADNQ V I+V +GER M DN
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 473 SLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGG-LSEDE 531
LG FEL GIPPAPRG+PQIEVTF+IDANGI+ VSA+DK+TGK +ITI++ G L++ +
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
Query: 532 IEKMVKEAELHAQRDNERKALIDIRNQAD 560
I++MV EA+ + D E++ + RNQ +
Sbjct: 124 IDRMVHEAKQFEKEDGEQRERVQARNQLE 152
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 268 bits (688), Expect = 9e-88
Identities = 88/135 (65%), Positives = 107/135 (79%)
Query: 393 LGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADN 452
+G++ + ++DVTPLSLGIET+GG+ T LI +NTTIPTK SQVFSTA DN
Sbjct: 1 MGSSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDN 60
Query: 453 QTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKA 512
Q+ V I VLQGER+ A+DNKSLG+F L GI PAPRGMPQIEVTFDIDA+GI+ VSAKDK
Sbjct: 61 QSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKN 120
Query: 513 TGKEQQITIRSSGGL 527
+GKEQ+ITI++S GL
Sbjct: 121 SGKEQKITIKASSGL 135
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 1e-32
Identities = 63/347 (18%), Positives = 108/347 (31%), Gaps = 87/347 (25%)
Query: 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGE--LLVGTPAKRQAVTNP 117
+ L N + + P V + +LV T + V
Sbjct: 6 LEQKLNLLNDLIV----REIVNPLP------PPYKVGVDLGTADIVLVVTDQEGIPVAGA 55
Query: 118 TNTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTK 177
K + + + +IVR +
Sbjct: 56 LKWASVVKDGLVVDYI----------GAIQIVR--------------------------E 79
Query: 178 MKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMN 237
+K E LG + +A +P +A AGL++ +++EP AA+ + G+N
Sbjct: 80 LKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN 139
Query: 238 NKEGLIAVFDLGGGTFDVSILEISNGVF-EDE---GIDLSKDRLALQRLREA-AEKAKIE 292
+ V D+GGGT ++++E DE G LS ++ AE K +
Sbjct: 140 DG----IVVDIGGGTTGIAVIEKGKITATFDEPTGGTHLSLVLAGSYKIPFEEAETIKKD 195
Query: 293 LSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTK 352
S + +V +IE+ K +K+ + T
Sbjct: 196 FSRHREI--------------------------MRVVRPVIEKMALIVKEVIKNYDQT-- 227
Query: 353 DVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQG 399
V +VGG + E S GK ++P LG A+ G
Sbjct: 228 --LPVYVVGGTAYLTGFSEEFSRFLGKEVQVPIHPLLVTPLGIALFG 272
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Length = 320 | Back alignment and structure |
|---|
Score = 112 bits (280), Expect = 2e-27
Identities = 44/348 (12%), Positives = 103/348 (29%), Gaps = 37/348 (10%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
++ ID G+TN + E + S +F ++ + G N
Sbjct: 2 LVFIDDGSTNIKLQWQESDGTI--------KQHISPNSFKREWAVSFGDKKVFNYTLN-- 51
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKM 178
G + D + + A + + S++ +
Sbjct: 52 ----GEQYSFDPISPDAVVTTNIAWQYSDVNVVAVHHALLTSG---LPVSEVDIVCTLPL 104
Query: 179 KETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMN- 237
E Y ++ + + +++ T + G + +++ E A
Sbjct: 105 TE----YYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQEL 160
Query: 238 NKEGLIAVFDLGGGTFDVSILEISNGVFEDEGIDLSKDR---LALQRLREAAEKAKIELS 294
++ + + DLGG T D+S + + I L +++A A+ + S
Sbjct: 161 DELDSLLIIDLGGTTLDISQ--VMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGS 218
Query: 295 STTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDV 354
S D I +L + ++V + + + +
Sbjct: 219 SYLADD-----IIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEFSGY 273
Query: 355 DEVLLVGGMTRVPKVQEVVSEIFGKSPSKGV---NPDEAVALGAAIQG 399
V+++GG + + + V + + N + G + G
Sbjct: 274 THVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Length = 346 | Back alignment and structure |
|---|
Score = 94.8 bits (235), Expect = 3e-21
Identities = 54/361 (14%), Positives = 107/361 (29%), Gaps = 71/361 (19%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
++G+D+G ++ KVI PS A + +G +
Sbjct: 23 VVGLDVGYGDT----------KVIGVDGKRIIFPSRWAVTETESWGIGGKIPVLSTDGGQ 72
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKM 178
K G +R P GD + + + +
Sbjct: 73 TKFIYGKYASGNN-----------------IRVPQGDGR-------LASKEAFPLIAAAL 108
Query: 179 KETAESYLGKSVSKAVIT-VPAYFNDAQRQATKDA------------GRIAGLDVQRIIN 225
E+ G V + + P D + +A K+A G + ++ R+I
Sbjct: 109 WESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIM 168
Query: 226 EPTAASLSYGM------NNKEGLIAVFDLGGGTFDVSILEISNGVFEDE---GIDLSKDR 276
P + + + G V D+G T DV + + + E + +
Sbjct: 169 RPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGD 228
Query: 277 LALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERT 336
+ L K +T +PF A + + + + + ++E
Sbjct: 229 A-ISALSRKIAK---------ETGFVVPFDLAQEALSHPVMFRQKQVGGPEVSGPILEDL 278
Query: 337 RAPCKNCLKDA-NITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGV--NPDEAVAL 393
++ V ++ VGG + + + + EI + K + A AL
Sbjct: 279 ANRIIENIRLNLRGEVDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANAL 336
Query: 394 G 394
G
Sbjct: 337 G 337
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 89.5 bits (221), Expect = 1e-18
Identities = 93/585 (15%), Positives = 168/585 (28%), Gaps = 148/585 (25%)
Query: 130 RKFDDPQTQKEMQMVSYK-----IVRAPNGDA------WV-EANGQQYSPSQIGAFVLTK 177
FD Q + + K I+ + + + W + ++ + FV
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE----MVQKFVEEV 86
Query: 178 MKET----AESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRI--INEPTAAS 231
++ + +++T + + + + D A +V R+ + A
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRM--YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 232 LS---------YGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEDEGIDLSKDR----LA 278
L G+ LG G + + + V + D L
Sbjct: 145 LELRPAKNVLIDGV-----------LGSGK---TWVALD--VCLSYKVQCKMDFKIFWLN 188
Query: 279 LQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHL-NITLTRSKFETLVNNLIERTR 337
L+ ++ Q D N S + H NI L + + L++
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNW------TSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 338 APCKNCL------KDAN------------ITTKDVDEVLLVGGMTRVPKVQEVVSEIFGK 379
NCL ++A +TT+ + T + I
Sbjct: 243 YE--NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT--------THISLD 292
Query: 380 SPSKGVNPDEAVALGAAIQGGILRGDVKEL--LLLDVTPLSLGIETLGGIFTRLINRNTT 437
S + PDE +L L ++L +L P L I I + + T
Sbjct: 293 HHSMTLTPDEVKSLLLK----YLDCRPQDLPREVLTTNPRRLSI-----IAESIRDGLAT 343
Query: 438 IPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEF-ELVGIPPAP-----RGMPQ 491
K V + + VL+ E L F IP + +
Sbjct: 344 WDNWK-HVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 492 IEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQ---RDNE 548
+V + N + S +K KE I+I + + K+ E LH N
Sbjct: 402 SDV--MVVVNKLHKYSLVEK-QPKESTISIP---SIYLELKVKLENEYALHRSIVDHYNI 455
Query: 549 RKALID----IRNQADTTIYS--------IEKS--LGEYRE----------KI-----PS 579
K D I D YS IE + +R KI
Sbjct: 456 PKTF-DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 580 EVAKEIEDAVADLRKAMG--ADNVDDIKSKLDAANKAVSKIGQHM 622
+ I + + L+ DN + ++A + KI +++
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Length = 355 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 9e-11
Identities = 56/368 (15%), Positives = 108/368 (29%), Gaps = 60/368 (16%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
++ +D G V VI PS + R+ N
Sbjct: 6 VMALDFGNGF--VKGKINDEKFVI---------PSRIG--------------RKTNENNQ 40
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKM 178
F +L +F E+ + + + N + +Y V +
Sbjct: 41 LKGFVDNKLDVSEFIINGNNDEVLLFGNDLDKTTNTGKDTASTNDRYDIKSFKDLVECSI 100
Query: 179 KETAESYLGKSVSKAVIT---VPAYFNDAQRQATKDAGRIAGLDVQ-----------RII 224
A + V+ + T D Q + K + +++ +I+
Sbjct: 101 GLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIV 160
Query: 225 NEPTAASLSYGMNN-------KEGLIAVFDLGGGTFDVSILEISNGVFEDE---GIDLSK 274
+P L M N EG +V D G GT + N +E I+
Sbjct: 161 AQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDT--YQNMKRVEEESFVINKGT 218
Query: 275 DRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIE 334
+R+ K E +S T I + I + +F ++LIE
Sbjct: 219 IDF-YKRIASHV-SKKSEGASITPRMIEKGLEYKQCKLNQKTVIDF-KDEFYKEQDSLIE 275
Query: 335 RTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALG 394
+ + + + +D +++ GG + + +S + K + + G
Sbjct: 276 EVMSNFEITVGN----INSIDRIIVTGGGANI--HFDSLSHYYSDVFEKADDSQFSNVRG 329
Query: 395 AAIQGGIL 402
G +L
Sbjct: 330 YEKLGELL 337
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Length = 329 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 1e-10
Identities = 34/285 (11%), Positives = 86/285 (30%), Gaps = 38/285 (13%)
Query: 140 EMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESY-------LGKSVSK 192
++ + + +E +G++Y + G ++ +T + + + +
Sbjct: 41 KIYNLEDGYIDIEGNSHKIELDGKEYLIGEQGVEDSSETSKTNLIHKLAAYTAITQVLDS 100
Query: 193 A-------VITVPA--YFNDAQRQATKDA------------GRIAGLDVQRIIN--EPTA 229
V+ P N ++ +D + ++ I E +
Sbjct: 101 NKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSG 160
Query: 230 ASLSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEDEGIDLSKDRLALQRLREAAEKA 289
N K +AV D GG S+ N V ++ + +
Sbjct: 161 VLFLEQENFKNKNVAVIDFGGLNMGFSL--YRNCVVNPSERF-IEEHGVKDLIIRVGDAL 217
Query: 290 KIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANI 349
+ T+ + K I ++ T++ + E+ ++
Sbjct: 218 TDLNNGNLITNEQAESALNNGYMKKGGEI---DTESSTVIKKVKEKFLKDAIKLIEKRGF 274
Query: 350 TTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALG 394
+D ++ +GG T+ ++E +S+ + + N G
Sbjct: 275 KLDQLDSLIFIGGTTQK--LKEQISKTYPNNSIITNNSQWTTCEG 317
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Length = 377 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 4e-09
Identities = 60/373 (16%), Positives = 122/373 (32%), Gaps = 47/373 (12%)
Query: 43 WASLTRPFSSKPAGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPS-------VV 95
+ SL++ F + + +G+++G + + + G P + + SR TP V
Sbjct: 2 FKSLSQLFRPR---VEALGLEIGASALKLVEVSGNPPAL--KALASRPTPPGLLMEGMVA 56
Query: 96 AFNQKGELLVGTPAKRQAVTNPTNTLFG--TKRLIGRKFDDPQ-TQKEMQMVSYKIVRAP 152
+ + +A T + +I R P+ KEM+
Sbjct: 57 EPAALAQEI--KELLLEARTRKRYVVTALSNLAVILRPIQVPKMPLKEMEEA-------- 106
Query: 153 NGDAWVEANGQQYSPSQIGAFVL--TKMKETAESYLGKSVSKAVITVPAYFNDAQRQATK 210
V ++Y P I VL + +E G+ V V +A +
Sbjct: 107 -----VRWEAERYIPFPIDEVVLDFAPLTPLSEVQEGEQVQVMVAAARQEAVAGVLEALR 161
Query: 211 DAGRIAGLDVQRIINEPTAASLSYGMN---NKEGLIAVFDLGGGTFDVSILEISNGVFED 267
AGL + +P A + + V D+G + + +L +
Sbjct: 162 G----AGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLAVR 217
Query: 268 E----GIDLSKD-RLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTR 322
G D ++ + AAE+ K T + + + + +
Sbjct: 218 VLTLSGKDFTEAIARSFNLDLLAAEEVKRTYGMATLPTEDEELLLDFDAERERYSPGRIY 277
Query: 323 SKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPS 382
++ L + R + + L+GG +++ + ++++ G
Sbjct: 278 DAIRPVLVELTQELRRSLEFFRIQLE--EASPEVGYLLGGGSKLRGLASLLTDTLGV-NL 334
Query: 383 KGVNPDEAVALGA 395
+ VNP EAVA+
Sbjct: 335 EPVNPWEAVAVDP 347
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} Length = 120 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 5e-07
Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 539 AELHAQRDNERKALIDIRNQADTTIYSIEKSLGE--YREKIPSEVAKEIEDAVADLRKAM 596
+ H + ++ +++++++ + ++KI E K+IED ++ K +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWL 62
Query: 597 GAD---NVDDIKSKLDAANKAVSKIGQHM---AGGSGGGAASGGSQGGEQTPEAEYEEV 649
++ ++ + + + I + AGG+ GAA GG+ GG P EEV
Sbjct: 63 DSNQTAEKEEFEHQQKDLEGLANPIISKLYQSAGGAPPGAAPGGAAGGAGGPTI--EEV 119
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A Length = 113 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 4e-06
Identities = 18/111 (16%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Query: 547 NERKALIDIRNQADTTIYSIEKSLGE--YREKIPSEVAKEIEDAVADLRKAMGAD---NV 601
N + +N ++ ++++ ++ + + KI K++ D ++ + A+
Sbjct: 2 NAAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEK 61
Query: 602 DDIKSKLDAANKAVSKIGQHMAGGSGGGAASGGSQGGEQTPEAE---YEEV 649
D+ + K + + I + G+GG G G + EEV
Sbjct: 62 DEFEHKRKELEQVCNPIISGLYQGAGGPGPGGFGAQGPKGGSGSGPTIEEV 112
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Length = 515 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 353 DVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKEL 409
+ +LL+GG + ++ + I G DE VA+GAA Q + E
Sbjct: 424 SITRILLIGGGAKSEAIRTLAPSILGM-DVTRPATDEYVAIGAARQAAWVLSGETEP 479
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 651 | |||
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 100.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 100.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 100.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 100.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 100.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 100.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 100.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 100.0 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 100.0 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 100.0 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 100.0 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 100.0 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 100.0 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 99.97 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 99.97 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 99.97 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 99.96 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 99.94 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.92 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 99.92 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 99.91 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 99.91 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 99.9 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 99.88 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 99.8 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 99.73 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 99.69 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 99.63 | |
| 3lof_A | 113 | Heat shock 70 kDa protein 1; structural genomics, | 99.58 | |
| 2p32_A | 120 | Heat shock 70 kDa protein A; three-helix bundle, c | 99.47 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 99.47 | |
| 1ud0_A | 113 | HSC70, 70 kDa heat-shock-like protein; chaperone; | 99.41 | |
| 3qb0_A | 498 | Actin-related protein 4; actin fold, ATP binding, | 99.24 | |
| 3dwl_A | 427 | Actin-related protein 3; propellor, actin-binding, | 99.22 | |
| 2d0o_A | 610 | DIOL dehydratase-reactivating factor large subunit | 99.15 | |
| 1nbw_A | 607 | Glycerol dehydratase reactivase alpha subunit; mol | 99.12 | |
| 4fo0_A | 593 | Actin-related protein 8; chromatin remodeling, nuc | 98.91 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 98.57 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 98.01 | |
| 3vgl_A | 321 | Glucokinase; ROK family, transferase; HET: BGC ANP | 96.89 | |
| 4am6_A | 655 | Actin-like protein ARP8; nuclear protein, chromati | 96.77 | |
| 3vov_A | 302 | Glucokinase, hexokinase; ROK, sugar kinase, transf | 96.56 | |
| 2i7n_A | 360 | Pantothenate kinase 1; PANK, transferase; HET: ACO | 96.51 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 96.15 | |
| 3r8e_A | 321 | Hypothetical sugar kinase; ribonuclease H-like mot | 96.12 | |
| 2qm1_A | 326 | Glucokinase; alpha-beta structure, putative helix- | 96.11 | |
| 3l0q_A | 554 | Xylulose kinase; xlylulose kinase, SGX, PSI, struc | 95.99 | |
| 4htl_A | 297 | Beta-glucoside kinase; structural genomics, sugar | 95.97 | |
| 2zf5_O | 497 | Glycerol kinase; hyperthermophilic archaeon, ATP-b | 95.97 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 95.94 | |
| 3ll3_A | 504 | Gluconate kinase; xylulose kinase, nysgx, ATP, ADP | 95.87 | |
| 2e2o_A | 299 | Hexokinase; acetate and sugar kinases, HSP70, acti | 95.85 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 95.8 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 95.67 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 95.42 | |
| 1z6r_A | 406 | MLC protein; transcriptional repressor, ROK family | 95.38 | |
| 3ifr_A | 508 | Carbohydrate kinase, FGGY; xylulose kinase, SGX, s | 95.37 | |
| 2dpn_A | 495 | Glycerol kinase; thermus thermophilus HB8, structu | 95.36 | |
| 3ezw_A | 526 | Glycerol kinase; glycerol metabolism, allosteric r | 95.3 | |
| 4db3_A | 327 | Glcnac kinase, N-acetyl-D-glucosamine kinase; stru | 95.27 | |
| 3jvp_A | 572 | Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su | 95.22 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 95.2 | |
| 3h3n_X | 506 | Glycerol kinase; ATP-binding, glycerol metabolism, | 95.17 | |
| 2p3r_A | 510 | Glycerol kinase; glycerol metabolism, allosteric r | 95.1 | |
| 2ivn_A | 330 | O-sialoglycoprotein endopeptidase; UP1 keops compl | 94.79 | |
| 2d4w_A | 504 | Glycerol kinase; alpha and beta protein, ribonucle | 94.71 | |
| 2w40_A | 503 | Glycerol kinase, putative; closed conformation, ma | 94.66 | |
| 2hoe_A | 380 | N-acetylglucosamine kinase; TM1224, structural gen | 94.27 | |
| 3bex_A | 249 | Type III pantothenate kinase; actin-like fold, ATP | 94.23 | |
| 1z05_A | 429 | Transcriptional regulator, ROK family; structural | 94.2 | |
| 3mdq_A | 315 | Exopolyphosphatase; structural genomics, joint cen | 94.16 | |
| 2uyt_A | 489 | Rhamnulokinase; rhamnose degradation, IN-LINE phos | 94.12 | |
| 3h6e_A | 482 | Carbohydrate kinase, FGGY; novosphingobium aromati | 92.49 | |
| 1u6z_A | 513 | Exopolyphosphatase; alpha/beta protein, askha (ace | 92.37 | |
| 3cet_A | 334 | Conserved archaeal protein; Q6M145, MRR63, NESG, X | 90.5 | |
| 2ch5_A | 347 | NAGK protein; transferase, N-acetylglucosamine, gl | 90.1 | |
| 1t6c_A | 315 | Exopolyphosphatase; alpha/beta protein, actin-like | 89.96 | |
| 3cer_A | 343 | Possible exopolyphosphatase-like protein; NESG, BL | 89.25 | |
| 2yhx_A | 457 | Hexokinase B; transferase(phosphoryl,alcohol accep | 85.56 | |
| 3hi0_A | 508 | Putative exopolyphosphatase; 17739545, structural | 81.63 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 81.16 |
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-105 Score=904.01 Aligned_cols=568 Identities=61% Similarity=0.957 Sum_probs=545.2
Q ss_pred CcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChH
Q 047849 57 NDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQ 136 (651)
Q Consensus 57 ~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~ 136 (651)
..+||||||||||+||++.+|.++++.|..|++++||+|+|.++++++||..|+.+...+|.++++++||+||+.++++.
T Consensus 2 ~~viGIDlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 81 (605)
T 4b9q_A 2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (605)
T ss_dssp CCEEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECCEEECTTSCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTSHH
T ss_pred CcEEEEEcCCCcEEEEEEECCEEEEEECCCCCcccceEEEEeCCCcEEecHHHHHHHHhCCCcEehhhHHhhCCCCCCHH
Confidence 35999999999999999999999999999999999999999878899999999999999999999999999999999999
Q ss_pred HHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHc
Q 047849 137 TQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIA 216 (651)
Q Consensus 137 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~A 216 (651)
++...+.+||.++...+|.+.+...++.++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++|+++|
T Consensus 82 v~~~~~~~p~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qr~a~~~Aa~~A 161 (605)
T 4b9q_A 82 VQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIA 161 (605)
T ss_dssp HHHHHTTCSSEEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred HHHHhhcCCeEEEEcCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999998899899999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeecchHHHhhhhccccCC-C-eEEEEEeCCcceEEEEEEEec----cccc------------------------
Q 047849 217 GLDVQRIINEPTAASLSYGMNNKE-G-LIAVFDLGGGTFDVSILEISN----GVFE------------------------ 266 (651)
Q Consensus 217 Gl~~~~li~Ep~AAAl~y~~~~~~-~-~vlVvD~GggT~Dvsv~~~~~----~~~~------------------------ 266 (651)
||+++++++||+|||++|+..... + ++||||+||||||+|++++.+ +.|+
T Consensus 162 Gl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~d~D~~l~~~l~ 241 (605)
T 4b9q_A 162 GLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV 241 (605)
T ss_dssp TCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred CCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChHHHHHHHHHHHH
Confidence 999999999999999999988643 3 999999999999999999877 5544
Q ss_pred -----ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHH
Q 047849 267 -----DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCK 341 (651)
Q Consensus 267 -----~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~ 341 (651)
.++.++..+++.+.+|+.+||++|+.||....+.+.++.+..+..|+.++.+.|||++|+++++|+++++..+|+
T Consensus 242 ~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~~~i~~~~~~~~~~g~~~~~~~itr~~~e~l~~~~~~~i~~~v~ 321 (605)
T 4b9q_A 242 EEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLK 321 (605)
T ss_dssp HHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEECSSSEEEEEEEEEHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCCeEEEEeeeccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHH
Confidence 456777889999999999999999999999999999998887766778899999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCccce
Q 047849 342 NCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGI 421 (651)
Q Consensus 342 ~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi 421 (651)
++|+++++...+|+.|+||||+|++|+|++.|++.||.++..+.||++|||+|||++|+.+++..+++.+.|++|+|||+
T Consensus 322 ~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAai~a~~l~~~~~~~~l~dv~p~slgi 401 (605)
T 4b9q_A 322 VALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGI 401 (605)
T ss_dssp HHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHHTSCCCSSSCTTTHHHHHHHHHHHHHHTSSCSEEEECBCSSCEEE
T ss_pred HHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHhccCcCCCcChhHHHHHhHHHHHHHhcCCCCceEEEeeeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred eecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCC
Q 047849 422 ETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDAN 501 (651)
Q Consensus 422 ~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~ 501 (651)
++.+|.|.+|||||++||++++++|++..|||+.+.|+|||||+.++.+|..||+|.|.++||+|+|.++|+|+|++|.|
T Consensus 402 e~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~ 481 (605)
T 4b9q_A 402 ETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDAD 481 (605)
T ss_dssp EETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEECTT
T ss_pred EEcCCEEEEEEeCCCcCCcceEEEeeeecccCceEEEEEEeccccccccCCEeeEEEEeCCCCCcCCCceEEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHH
Q 047849 502 GIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEV 581 (651)
Q Consensus 502 G~l~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~ 581 (651)
|+|+|++.++.||++.+++|.++.+||++||++|++++++++++|++.+++.+++|++|+|+|++++.|+++.+++++++
T Consensus 482 gil~v~a~~~~tg~~~~i~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~~~~~ 561 (605)
T 4b9q_A 482 GILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEEAGDKLPADD 561 (605)
T ss_dssp SCEEEEEEETTTCCEECCEEESCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHH
T ss_pred cEEEEEEEecCCCcEEEEEecCCCCCCHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 99999999999999999999988899999999999999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 047849 582 AKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAG 624 (651)
Q Consensus 582 ~~~~~~~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~ 624 (651)
|+++.+.++++++||++++.+++++++++|++.+.++++++|+
T Consensus 562 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 604 (605)
T 4b9q_A 562 KTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQ 604 (605)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999986
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-102 Score=882.26 Aligned_cols=567 Identities=62% Similarity=0.962 Sum_probs=538.9
Q ss_pred cEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHH
Q 047849 58 DIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQT 137 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~ 137 (651)
.+||||||||||+||++.+|.++++.|+.|++++||+|+|+++++++||..|+.+...+|+++++++||+||+.++++.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~~v 82 (605)
T 2kho_A 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEV 82 (605)
T ss_dssp -CEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECEEEECTTSCEEESHHHHTTTTTCGGGEEECGGGTTTCBSSSTTH
T ss_pred CEEEEEcCCcCEEEEEEECCEEEEEECCCCCcccceEEEEECCCcEEECHHHHHHhhhCCCCEeehhhHhhCCCCCcHHH
Confidence 48999999999999999999999999999999999999998788999999999999999999999999999999999999
Q ss_pred HHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcC
Q 047849 138 QKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAG 217 (651)
Q Consensus 138 ~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AG 217 (651)
+...+.+||.++.+.+|.+.+..+++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|++.||
T Consensus 83 ~~~~~~~p~~~~~~~~g~~~i~~~g~~~~~~ei~a~~L~~l~~~ae~~l~~~v~~~VitVPa~f~d~qr~a~~~A~~~AG 162 (605)
T 2kho_A 83 QRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAG 162 (605)
T ss_dssp HHHHHHCSSCEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHHHTTT
T ss_pred HHHhhcCCeEEEECCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 99999999999888889888888889999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeecchHHHhhhhccccC-CC-eEEEEEeCCcceEEEEEEEe----ccccc-------------------------
Q 047849 218 LDVQRIINEPTAASLSYGMNNK-EG-LIAVFDLGGGTFDVSILEIS----NGVFE------------------------- 266 (651)
Q Consensus 218 l~~~~li~Ep~AAAl~y~~~~~-~~-~vlVvD~GggT~Dvsv~~~~----~~~~~------------------------- 266 (651)
|+++++++||+|||++|+.+.. .+ ++||||+||||||+|++++. ++.|+
T Consensus 163 l~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~d~D~~l~~~l~~ 242 (605)
T 2kho_A 163 LEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVE 242 (605)
T ss_dssp CEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGGGTHHHHHHHHHH
T ss_pred CceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHHHHHHHHHHHHHH
Confidence 9999999999999999998875 33 99999999999999999997 56553
Q ss_pred ----ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHH
Q 047849 267 ----DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKN 342 (651)
Q Consensus 267 ----~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~ 342 (651)
+++.++..+++++.+|+.+||++|+.||....+.+.++.+.++..|+.++.+.|||++|+++++|+++++..+|++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~ 322 (605)
T 2kho_A 243 EFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKV 322 (605)
T ss_dssp HHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHTTCCSTTGGGTSHHHH
T ss_pred HHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEecccccCCCCceEEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 2466777888999999999999999999999999999887765444467888999999999999999999999999
Q ss_pred HHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCcccee
Q 047849 343 CLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIE 422 (651)
Q Consensus 343 ~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~ 422 (651)
+|+++++.+.+|+.|+||||+|++|+|++.|++.||.++....||++|||+|||++|+.+++.++++.+.|++|++||++
T Consensus 323 ~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~fg~~~~~~~npd~aVA~GAa~~a~~l~~~~~~~~l~dv~p~slgi~ 402 (605)
T 2kho_A 323 ALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIE 402 (605)
T ss_dssp HHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHHTTTTTSCCCCCCSBCCCCCEEEE
T ss_pred HHHHcCCChhhCceEEEECCcccChHHHHHHHHhcCCCcCcCCCcchHHHHHHHHHHHHhcCCccCceEEeeeeeecccc
Confidence 99999999999999999999999999999999999998999999999999999999999998888999999999999999
Q ss_pred ecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCe
Q 047849 423 TLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANG 502 (651)
Q Consensus 423 ~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G 502 (651)
+.+|.|.+|||||++||++++++|++..|+|+.+.|+||||++.++.+|..||+|.|.++||+|+|.++|+|+|++|.||
T Consensus 403 ~~~g~~~~li~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~g 482 (605)
T 2kho_A 403 TMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADG 482 (605)
T ss_dssp ETTTEEEEEECTTBCSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTCSCEEEEEEECTTS
T ss_pred ccCCceEEEEecccccCccceEEEEecCCCceEEEEEEEeccCcccccCcEEeEEEecCCCCCCCCCcEEEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHH
Q 047849 503 IVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVA 582 (651)
Q Consensus 503 ~l~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~ 582 (651)
+|+|++.++.||++.+++|..+.+||++||++|++++++++++|++++++.+++|++|+|+|++++.|+++.++++++++
T Consensus 483 il~v~a~~~~tg~~~~i~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l~~~~~~~~~~~~ 562 (605)
T 2kho_A 483 ILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDK 562 (605)
T ss_dssp CEEEEEEETTTCCEEEEEECTTSSCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHH
T ss_pred ceeEEEEEcCCCceeecccccccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHH
Confidence 99999999999999999999888999999999999999999999999999999999999999999999888889999999
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 047849 583 KEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAG 624 (651)
Q Consensus 583 ~~~~~~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~ 624 (651)
+++.+.++++++||++++.+++++++++|++.+.++..++|+
T Consensus 563 ~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 604 (605)
T 2kho_A 563 TAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQ 604 (605)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999989999999999999999999999986
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-97 Score=849.34 Aligned_cols=559 Identities=25% Similarity=0.412 Sum_probs=515.5
Q ss_pred cEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHH
Q 047849 58 DIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQT 137 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~ 137 (651)
.+||||||||||+||++.+|.++++.|..|++++||+|+|. +++++||..|+.+...+|.++++++||+||+.++++.+
T Consensus 3 ~~iGIDlGTtns~va~~~~g~~~ii~n~~g~r~tPS~Vaf~-~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v 81 (675)
T 3d2f_A 3 TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFG-PKNRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPDF 81 (675)
T ss_dssp CCEEEECCSSEEEEEEEETTEEEEECCTTSCSSEECCEEEC-SSSEEETHHHHHHHTTCGGGEECCHHHHTTCBTTCTTH
T ss_pred cEEEEEcCCCcEEEEEEECCeeEEEECCCCCcccceEEEEC-CCcEEecHHHHHhhhhChHhHHHHHHHHhCCCCCcHHH
Confidence 38999999999999999999999999999999999999996 45899999999999999999999999999999999999
Q ss_pred HHHhhcceeEEEECCCCCeEEEe--CC--eeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHH
Q 047849 138 QKEMQMVSYKIVRAPNGDAWVEA--NG--QQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAG 213 (651)
Q Consensus 138 ~~~~~~~~~~~~~~~~g~~~v~~--~~--~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa 213 (651)
+.+.+.+||.++...+|.+.+.. .+ +.++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++|+
T Consensus 82 ~~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 161 (675)
T 3d2f_A 82 EQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAA 161 (675)
T ss_dssp HHHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 99999999999988888877653 23 679999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEeecchHHHhhhhcccc-------CCC-eEEEEEeCCcceEEEEEEEeccccc-------------------
Q 047849 214 RIAGLDVQRIINEPTAASLSYGMNN-------KEG-LIAVFDLGGGTFDVSILEISNGVFE------------------- 266 (651)
Q Consensus 214 ~~AGl~~~~li~Ep~AAAl~y~~~~-------~~~-~vlVvD~GggT~Dvsv~~~~~~~~~------------------- 266 (651)
+.|||+++++++||+|||++|+..+ ..+ ++||||+||||||+|++++.++.|+
T Consensus 162 ~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g~~~V~a~~gd~~lGG~d~D~~l 241 (675)
T 3d2f_A 162 RIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAI 241 (675)
T ss_dssp HHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHH
T ss_pred HHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEecCCeEEEEEEcCCCCccHHHHHHHH
Confidence 9999999999999999999998754 223 8999999999999999998776653
Q ss_pred ----------ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHH
Q 047849 267 ----------DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERT 336 (651)
Q Consensus 267 ----------~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i 336 (651)
++++++..+++++.+|+.+||++|+.||...++.+.++.+.++ .++.+.|||++|+++++|+++++
T Consensus 242 ~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~~~i~i~~~~~g----~~~~~~itr~~fe~l~~~l~~~i 317 (675)
T 3d2f_A 242 TEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMND----VDVSSQLSREELEELVKPLLERV 317 (675)
T ss_dssp HHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCSEEEEEETTSSSS----CCEEEEEEHHHHHHHTHHHHTTT
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCCceEEEEeeeccC----ceEEEEEeHHHHHHHHHHHHHHH
Confidence 3567888899999999999999999999988888888876654 67899999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCC--cceeEEEec
Q 047849 337 RAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGD--VKELLLLDV 414 (651)
Q Consensus 337 ~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~--~~~~~~~d~ 414 (651)
..+|+++|+++++++.+|+.|+||||+|++|+|++.|++.||.++..+.||++|||+|||++|+.+++. ++++.+.|+
T Consensus 318 ~~~i~~~L~~a~l~~~~I~~VvLvGGssriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAa~~a~~ls~~~~v~~~~l~Dv 397 (675)
T 3d2f_A 318 TEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDI 397 (675)
T ss_dssp THHHHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHHTSCEECCSCTTTHHHHHHHHHHHHTCSSCCCCCCEEEEE
T ss_pred HHHHHHHHHHhCCChhhCcEEEEECCCccChHHHHHHHHhcCCCccccCCcchHHHHHHHHHHHHhCCCCcccceEEEee
Confidence 999999999999999999999999999999999999999999888899999999999999999999985 688999999
Q ss_pred ccCccceeecCC----eEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccc-cCcceeEEEEeCCCCCCCCC
Q 047849 415 TPLSLGIETLGG----IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAS-DNKSLGEFELVGIPPAPRGM 489 (651)
Q Consensus 415 ~~~sigi~~~~~----~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~-~n~~lg~~~l~~~~~~~~g~ 489 (651)
+|+|||+++.++ .+.+|||+|++||++++.+|++..|+| +.+. |+|++.++. +|..||+|.|.|+||.|+|.
T Consensus 398 ~p~slgi~~~~~~~~~~~~~li~rnt~iP~~k~~~f~~~~~~~--~~~~-~~ge~~~~~~~n~~lg~f~l~gi~~~~~g~ 474 (675)
T 3d2f_A 398 HPYSVSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDFS--MAAS-YTDITQLPPNTPEQIANWEITGVQLPEGQD 474 (675)
T ss_dssp ECSCEEEEECCTTCSCSEEEEECTTEEESEEEEEEEEESSCEE--EEEE-ESCGGGSCTTCCSEEEEEEEECCCCCSSCS
T ss_pred eecceEeeecCCCCCcceEEEEcCCCCCCcccceeeeecCCce--EEEE-EcCCcccccccCceeeEEEecCcCCCCCCC
Confidence 999999999877 499999999999999999999887653 3332 779998887 99999999999999999997
Q ss_pred C-eeEEEEEEcCCeeEEEEEE----------ecCCCceeeEEecCC-CCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 047849 490 P-QIEVTFDIDANGIVTVSAK----------DKATGKEQQITIRSS-GGLSEDEIEKMVKEAELHAQRDNERKALIDIRN 557 (651)
Q Consensus 490 ~-~i~v~f~~d~~G~l~v~~~----------~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n 557 (651)
+ +|+|+|++|.||+|+|++. ++.|+++.+++|... .+||++||++|+++++++.++|++++++.+++|
T Consensus 475 ~~~i~v~f~id~~Gil~V~a~~~~~~~~~~~~~~t~~~~~i~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~~~n 554 (675)
T 3d2f_A 475 SVPVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAETEDRKN 554 (675)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEECC------CCCCEEEECEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEEEcCCCcEEEEEEEEeecccccccccCcceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4 9999999999999999995 789999999999875 489999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh-cccCCCHHHHHHHHHHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHHHHHHhc
Q 047849 558 QADTTIYSIEKSLGE-YREKIPSEVAKEIEDAVADLRKAMGADN----VDDIKSKLDAANKAVSKIGQHMAG 624 (651)
Q Consensus 558 ~le~~i~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~wl~~~~----~~~~~~k~~~l~~~~~~i~~~~~~ 624 (651)
+||+|+|++++.|++ +.+++++++++++.+.|+++++||++++ .++|++++++|++.+.++..|+++
T Consensus 555 ~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~~~~~l~~~~~~i~~r~~e 626 (675)
T 3d2f_A 555 TLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLA 626 (675)
T ss_dssp HHHHHHHHHHHHHTTTTGGGSCHHHHHHHHHHHHHHHHHTTTGGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999974 7889999999999999999999998653 789999999999999999988874
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-92 Score=788.11 Aligned_cols=509 Identities=52% Similarity=0.837 Sum_probs=474.3
Q ss_pred CCcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCCh
Q 047849 56 GNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDP 135 (651)
Q Consensus 56 ~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~ 135 (651)
++.+||||||||||+||++.+|.++++.|+.|++++||+|+|.+ ++++||..|+.+...+|.++++++||+||+.++++
T Consensus 3 m~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~-~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~ 81 (554)
T 1yuw_A 3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDA 81 (554)
T ss_dssp SCCCEEEEECSSEEEEEEECSSSEEECCCTTSCSEEECCEEECS-SCEEETHHHHTTTTTCGGGEECCGGGTTTCCSSCS
T ss_pred CCCEEEEEeCcccEEEEEEECCEEEEEECCCCCeecceEEEEcC-CcEEEcHHHHHhhhhChhhehHhhHHhcCCCCCcH
Confidence 44689999999999999999999999999999999999999964 58999999999999999999999999999999999
Q ss_pred HHHHHhhcceeEEEECCCCCeEEEe--C--CeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHH
Q 047849 136 QTQKEMQMVSYKIVRAPNGDAWVEA--N--GQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKD 211 (651)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~g~~~v~~--~--~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~ 211 (651)
.++...+.+||.++. .+|.+.+.. . .+.++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++
T Consensus 82 ~v~~~~~~~p~~v~~-~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~v~~~VitVPa~f~~~qr~a~~~ 160 (554)
T 1yuw_A 82 VVQSDMKHWPFMVVN-DAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKD 160 (554)
T ss_dssp HHHHHHTTCSSEEEE-ETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHhhcCCeEEEe-cCCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 999999999999885 366666542 2 37899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceEEeecchHHHhhhhccccC--CC-eEEEEEeCCcceEEEEEEEeccccc----------------------
Q 047849 212 AGRIAGLDVQRIINEPTAASLSYGMNNK--EG-LIAVFDLGGGTFDVSILEISNGVFE---------------------- 266 (651)
Q Consensus 212 Aa~~AGl~~~~li~Ep~AAAl~y~~~~~--~~-~vlVvD~GggT~Dvsv~~~~~~~~~---------------------- 266 (651)
|++.|||+++++++||+|||++|+.++. .+ ++||||+||||||++++++.++.++
T Consensus 161 A~~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~ 240 (554)
T 1yuw_A 161 AGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNH 240 (554)
T ss_dssp HHHTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHH
T ss_pred HHHHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999998764 23 8999999999999999998776653
Q ss_pred -------ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHH
Q 047849 267 -------DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAP 339 (651)
Q Consensus 267 -------~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~ 339 (651)
+++.++..+++.+.+|+.+||++|+.||...++.+.++.+.++ .++...|+|++|+++++|+++++..+
T Consensus 241 l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~~~~~g----~~~~~~ltr~~~e~l~~~~~~~i~~~ 316 (554)
T 1yuw_A 241 FIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARFEELNADLFRGTLDP 316 (554)
T ss_dssp HHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEETTCSSS----CCEEEEEEHHHHHHHTHHHHHHTTHH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCceEEEEEeeccCC----ceEEEEEEHHHHHHHHHHHHHHHHHH
Confidence 3466777889999999999999999999999999988876554 67889999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhc-CCCCCcCCccchheehhHHHhhhccCC----cceeEEEec
Q 047849 340 CKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFG-KSPSKGVNPDEAVALGAAIQGGILRGD----VKELLLLDV 414 (651)
Q Consensus 340 i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~l~~~----~~~~~~~d~ 414 (651)
|+++|+++++.+.+|+.|+||||+|++|+|++.|++.|+ .++..+.||++|||+|||++|+.+++. .+++.+.|+
T Consensus 317 i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~dv 396 (554)
T 1yuw_A 317 VEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDV 396 (554)
T ss_dssp HHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHTTSCCCCCTTSSCCCCB
T ss_pred HHHHHHHcCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHHHHhcCCccccccceEEEEe
Confidence 999999999999999999999999999999999999995 778889999999999999999998874 578999999
Q ss_pred ccCccceeecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEE
Q 047849 415 TPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEV 494 (651)
Q Consensus 415 ~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v 494 (651)
+|++||+++.+|.|.+||++|+++|++++++|++..|+|+.+.|+||||++..+.+|..||+|.|.++||.|+|.++|+|
T Consensus 397 ~p~slgi~~~~g~~~~li~r~t~iP~~~~~~f~~~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v 476 (554)
T 1yuw_A 397 TPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476 (554)
T ss_dssp CSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCCCSTTCCCEEE
T ss_pred eeeEEEEEecCceEEEEEECCCccCceeEEEeeeccCCCceEEEEEEecCccccccCcEEEEEEEeCCCCCcccccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCeeEEEEEEecCCCceeeEEecCC-CCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 047849 495 TFDIDANGIVTVSAKDKATGKEQQITIRSS-GGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSL 570 (651)
Q Consensus 495 ~f~~d~~G~l~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l 570 (651)
+|++|.||+|+|++.++.||++.+++|..+ +.||++||++|++++++++++|++++++.+++|+||+|+|++++.|
T Consensus 477 ~f~id~~gil~v~a~~~~tg~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l 553 (554)
T 1yuw_A 477 TFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATV 553 (554)
T ss_dssp EEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCEECSSCCSCSCCCC
T ss_pred EEEEccCceEEEEEEeccCCCceeEEEecCCCCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999886 6799999999999999999999999999999999999999887654
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-85 Score=732.05 Aligned_cols=477 Identities=67% Similarity=1.035 Sum_probs=442.8
Q ss_pred cEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHH
Q 047849 58 DIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQT 137 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~ 137 (651)
.+||||||||||+||++.+|.++++.|+.|++++||+|+| .+++++||+.|+.+...+| ++++++||+||+++.
T Consensus 3 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~-~~~~~~vG~~A~~~~~~~p-~~~~~~Kr~lg~p~~---- 76 (509)
T 2v7y_A 3 KIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAF-KNGERLVGEVAKRQAITNP-NTIISIKRHMGTDYK---- 76 (509)
T ss_dssp CEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEE-SSSSEEESHHHHTTTTTCS-SEEECGGGTTTSCCC----
T ss_pred CEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEE-CCCcEEECHHHHHhHHhCC-CcHHHHHHhcCCCcE----
Confidence 5899999999999999999999999999999999999999 5788999999999999999 999999999998543
Q ss_pred HHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcC
Q 047849 138 QKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAG 217 (651)
Q Consensus 138 ~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AG 217 (651)
+..+++.++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|++.||
T Consensus 77 --------------------~~~~g~~~~~~ei~a~~L~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a~~~AG 136 (509)
T 2v7y_A 77 --------------------VEIEGKQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAG 136 (509)
T ss_dssp --------------------EEETTEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred --------------------EEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 123456789999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc-----------------------------c
Q 047849 218 LDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE-----------------------------D 267 (651)
Q Consensus 218 l~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~-----------------------------~ 267 (651)
|+++++++||+|||++|+.+...+ ++||||+||||||++++++.++.|+ +
T Consensus 137 l~~~~li~Ep~AAAlay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~ 216 (509)
T 2v7y_A 137 LEVERIINEPTAAALAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQE 216 (509)
T ss_dssp CEEEEEEEHHHHHHHHTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEecCHHHHHHHHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876554 9999999999999999998766553 2
Q ss_pred cCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047849 268 EGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDA 347 (651)
Q Consensus 268 ~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a 347 (651)
++.++..+++.+.+|+.+||++|+.||...++.+.++.+.++.+|+.++.+.|||++|+++++|+++++.++|+++|+++
T Consensus 217 ~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~L~~a 296 (509)
T 2v7y_A 217 HGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDA 296 (509)
T ss_dssp HSCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHTHHHHHTTHHHHHHHHHHH
T ss_pred hCCCcccCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCCCCCeeEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46677788899999999999999999999989999887776544445778899999999999999999999999999999
Q ss_pred CCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCccceeecCCe
Q 047849 348 NITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGI 427 (651)
Q Consensus 348 ~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~~~~~~ 427 (651)
++.+.+|+.|+||||+|++|+|++.|++.|+.++..+.||++|||+|||++|+.+++..+++.+.|++|++||+++.+|.
T Consensus 297 ~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~Gaa~~a~~l~~~~~~~~~~dv~p~slgi~~~~~~ 376 (509)
T 2v7y_A 297 GLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGVIAGEVKDVVLLDVTPLSLGIETMGGV 376 (509)
T ss_dssp TCCGGGCSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSCTTTHHHHHHHHHHHHHHTCCCCCCCCCBCSSEEEEEETTTE
T ss_pred CCChhHCcEEEEECCcccChHHHHHHHHHhCCCcCcCCCchhhhHhhHHHHHHHhcCCccCceEEEeeccccceeecCCc
Confidence 99989999999999999999999999999998888999999999999999999999888899999999999999999999
Q ss_pred EEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEEEE
Q 047849 428 FTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVS 507 (651)
Q Consensus 428 ~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~v~ 507 (651)
|.+||+||+++|++++++|++..|+|+.+.|++|||++..+.+|..||+|.|.++||.|+|.++|+|+|++|.||+|+|+
T Consensus 377 ~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~ 456 (509)
T 2v7y_A 377 FTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIVHVR 456 (509)
T ss_dssp EEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEEESSSBGGGSEEEEEEEEECCCCCCTTCSCEEEEEEECTTSCEEEE
T ss_pred eEEEEeCCCcCCcceEEEEEeeccCcEEEEEEEEecCccccccCcEEEEEEEeCCCCCCCcccEEEEEEEEcCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 047849 508 AKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQAD 560 (651)
Q Consensus 508 ~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le 560 (651)
+.++.||++.+++|..+.+||++||++|++++++++++|++++++.+++|+||
T Consensus 457 a~~~~~g~~~~~~i~~~~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~e 509 (509)
T 2v7y_A 457 AKDLGTNKEQSITIKSSSGLSEEEIQRMIKEAEENAEADRKRKEAAELRNEAD 509 (509)
T ss_dssp EEETTTCCEEEEEECSSCSCCSHHHHHHHHHHHHSCGGGGGGGGCCCC-----
T ss_pred EEEcCCCcEEEEEEEecCCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHhhcC
Confidence 99999999999999988889999999999999999999999999999999986
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-59 Score=505.63 Aligned_cols=343 Identities=50% Similarity=0.810 Sum_probs=314.4
Q ss_pred CCcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCCh
Q 047849 56 GNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDP 135 (651)
Q Consensus 56 ~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~ 135 (651)
.+.+||||||||||+||++.+|.++++.|+.|++++||+|+|.+ ++++||..|+.+...+|.++++++||++|+.++++
T Consensus 22 ~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~-~~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~~~~~~ 100 (404)
T 3i33_A 22 SMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDA 100 (404)
T ss_dssp -CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECS-SCEEETHHHHHTTTTCSTTEECCGGGTTTCCTTSH
T ss_pred cCCEEEEEcCCccEEEEEEECCeeEEEECCCCCcccceEEEECC-CCEEecHHHHHhhHhChhhhHHHHHHHhCCCCCcH
Confidence 34589999999999999999999999999999999999999964 58999999999999999999999999999999999
Q ss_pred HHHHHhhcceeEEEECCCCCeEEE--eCC--eeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHH
Q 047849 136 QTQKEMQMVSYKIVRAPNGDAWVE--ANG--QQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKD 211 (651)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~g~~~v~--~~~--~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~ 211 (651)
.++...+.+||.+.. .+|...+. ..+ ..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++
T Consensus 101 ~~~~~~~~~p~~~~~-~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~~ 179 (404)
T 3i33_A 101 TVQSDMKHWPFRVVS-EGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKD 179 (404)
T ss_dssp HHHHHHTTCSSEEEE-ETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHHhhCCceEEc-cCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhccCCCcEEEEECCCCCHHHHHHHHH
Confidence 999999999999886 55655544 444 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceEEeecchHHHhhhhccccC----CC-eEEEEEeCCcceEEEEEEEeccccc--------------------
Q 047849 212 AGRIAGLDVQRIINEPTAASLSYGMNNK----EG-LIAVFDLGGGTFDVSILEISNGVFE-------------------- 266 (651)
Q Consensus 212 Aa~~AGl~~~~li~Ep~AAAl~y~~~~~----~~-~vlVvD~GggT~Dvsv~~~~~~~~~-------------------- 266 (651)
|++.|||+++++++||+|||++|+.... .+ ++||||+||||||++++++.++.++
T Consensus 180 a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 259 (404)
T 3i33_A 180 AGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 259 (404)
T ss_dssp HHHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHH
T ss_pred HHHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCCeEEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999999999988754 33 8999999999999999998776543
Q ss_pred ---------ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHH
Q 047849 267 ---------DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTR 337 (651)
Q Consensus 267 ---------~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~ 337 (651)
+++.++..+++.+.+|+.+||++|+.||......+.++.+.++ .++.+.|+|++|+++++|+++++.
T Consensus 260 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~g----~~~~~~i~r~~~~~~~~~~~~~i~ 335 (404)
T 3i33_A 260 SHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----VDFYTSITRARFEELNADLFRGTL 335 (404)
T ss_dssp HHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEETT----EEEEEEEEHHHHHHHTHHHHHHTH
T ss_pred HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCcceEEEEeeccCC----ceeEEEEcHHHHHHHHHHHHHHHH
Confidence 3466777788999999999999999999999999988877665 788999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHh-cCCCCCcCCccchheehhHHHhhhccC
Q 047849 338 APCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIF-GKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 338 ~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f-~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
++|.++|+.+++...+|+.|+||||+|++|+|++.|++.| +.++..+.||++|||+|||++|+.+++
T Consensus 336 ~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 336 EPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403 (404)
T ss_dssp HHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999 788888999999999999999998875
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-59 Score=499.60 Aligned_cols=346 Identities=65% Similarity=1.042 Sum_probs=316.1
Q ss_pred cEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHH
Q 047849 58 DIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQT 137 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~ 137 (651)
.+||||||||||+||++.+|.++++.|+.|++++||+|+|+++++++||..|+.+...+|+++++++||+||+.++++.+
T Consensus 3 ~~vGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 82 (383)
T 1dkg_D 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEV 82 (383)
T ss_dssp CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHH
T ss_pred cEEEEEcCCCCEEEEEEECCeeEEEECCCCCcccceEEEEECCCCEEECHHHHHhhhhCccceeehhHHhhCCCCCcHHH
Confidence 48999999999999999999999999999999999999998778999999999999999999999999999999999999
Q ss_pred HHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcC
Q 047849 138 QKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAG 217 (651)
Q Consensus 138 ~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AG 217 (651)
+...+.+||.+..+.++...+..+++.++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++|++.||
T Consensus 83 ~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~i~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~a~~~aG 162 (383)
T 1dkg_D 83 QRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAG 162 (383)
T ss_dssp HHHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHhhcCCeEEEEcCCCcEEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 98888999999888888888887888999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeecchHHHhhhhccccC-CC-eEEEEEeCCcceEEEEEEEe----ccccc-------------------------
Q 047849 218 LDVQRIINEPTAASLSYGMNNK-EG-LIAVFDLGGGTFDVSILEIS----NGVFE------------------------- 266 (651)
Q Consensus 218 l~~~~li~Ep~AAAl~y~~~~~-~~-~vlVvD~GggT~Dvsv~~~~----~~~~~------------------------- 266 (651)
++++.+++||+|||++|+.... .+ ++||||+||||||+++++.. ++.++
T Consensus 163 l~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 242 (383)
T 1dkg_D 163 LEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVE 242 (383)
T ss_dssp CEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHH
T ss_pred CceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998754 33 99999999999999999987 34442
Q ss_pred ----ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHH
Q 047849 267 ----DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKN 342 (651)
Q Consensus 267 ----~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~ 342 (651)
+++.++..+++.+.+|+.+||++|+.|+...+..+.++.+.+..+|+.++.+.|+|++|+++++|+++++.+++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~G~~~~~~~it~~~~~~~~~~~~~~i~~~i~~ 322 (383)
T 1dkg_D 243 EFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKV 322 (383)
T ss_dssp HHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 2256677778889999999999999999998888888776654333356778999999999999999999999999
Q ss_pred HHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhcc
Q 047849 343 CLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILR 403 (651)
Q Consensus 343 ~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~ 403 (651)
+|+++++.+.+++.|+|+||+|++|+|++.|++.|+.++..+.||++|||+|||++|+.++
T Consensus 323 ~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~ 383 (383)
T 1dkg_D 323 ALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383 (383)
T ss_dssp HHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHhhC
Confidence 9999999888999999999999999999999999998888899999999999999999764
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-57 Score=493.57 Aligned_cols=340 Identities=29% Similarity=0.471 Sum_probs=300.5
Q ss_pred CcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChH
Q 047849 57 NDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQ 136 (651)
Q Consensus 57 ~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~ 136 (651)
+.+||||||||||+||++.++.++++.|+.|++++||+|+|. ++.++||..|..+...+|.++++++|+++|+.++++.
T Consensus 13 ~~vvGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~-~~~~~~G~~A~~~~~~~~~~~i~~~K~llg~~~~~~~ 91 (409)
T 4gni_A 13 RVVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYV-DGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSVD 91 (409)
T ss_dssp CCEEEEEECSSEEEEEEEETTEEEEECCTTSCSSEECEEEEE-TTEEEEHHHHHHHHHHCGGGEEESCGGGTTCCGGGCC
T ss_pred CcEEEEEcCCCeEEEEEEeCCceEEEECCCCCccCceEEEEC-CCcEEEcHHHHHhhHhChHhhHHHHHHHhCCCccchh
Confidence 469999999999999999999999999999999999999995 6789999999999999999999999999999988765
Q ss_pred HHHHhhcceeEEEECCCCCeEEEe--------CCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHH
Q 047849 137 TQKEMQMVSYKIVRAPNGDAWVEA--------NGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQA 208 (651)
Q Consensus 137 ~~~~~~~~~~~~~~~~~g~~~v~~--------~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~ 208 (651)
++... .++.+. ..+|.+.+.. .++.++|+++++++|++|++.++.+++.++.++|||||++|++.||++
T Consensus 92 ~~~~~--~~~~~~-~~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~ 168 (409)
T 4gni_A 92 PTHNH--ASAHPQ-EAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQKAA 168 (409)
T ss_dssp CGGGT--TSCCCE-EETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHH
T ss_pred hhhhc--ccccee-cCCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHH
Confidence 54432 233322 2455555552 246899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCceEEeecchHHHhhhhcccc---CCC-eEEEEEeCCcceEEEEEEEeccccc------------------
Q 047849 209 TKDAGRIAGLDVQRIINEPTAASLSYGMNN---KEG-LIAVFDLGGGTFDVSILEISNGVFE------------------ 266 (651)
Q Consensus 209 l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~---~~~-~vlVvD~GggT~Dvsv~~~~~~~~~------------------ 266 (651)
+++|++.|||+++++++||+|||++|+... ..+ ++||||+||||||++++++.++.++
T Consensus 169 ~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~ 248 (409)
T 4gni_A 169 LIAAAAAADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKV 248 (409)
T ss_dssp HHHHHHHTTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHH
T ss_pred HHHHHHHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHH
Confidence 999999999999999999999999999874 233 9999999999999999988766544
Q ss_pred -----------ccC--CCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHH
Q 047849 267 -----------DEG--IDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLI 333 (651)
Q Consensus 267 -----------~~~--~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~ 333 (651)
.++ .+...+++.+.+|+.+||++|+.||....+.+.++.+.++ .++.+.|||++|+++++|++
T Consensus 249 i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~----~~~~~~itr~~~~~~~~~~~ 324 (409)
T 4gni_A 249 LIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDG----LDFASTINRLRYETIARTVF 324 (409)
T ss_dssp HHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEETT----EEEEEEEEHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCCCceEEEeecccCC----cceEEEeeHHHHHHHHHHHH
Confidence 233 6667788999999999999999999999999999887765 78899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCC--------CCcCCccchheehhHHHhhhccC
Q 047849 334 ERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSP--------SKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 334 ~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~--------~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
+++.++|+++|+++++...+|+.|+||||+|++|+|++.|++.|+.++ ....||++|||+|||++|+....
T Consensus 325 ~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~~~ 403 (409)
T 4gni_A 325 EGFNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQARGAALQASLIQE 403 (409)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999998652 57899999999999999997653
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-42 Score=335.46 Aligned_cols=215 Identities=55% Similarity=0.811 Sum_probs=208.8
Q ss_pred EEEecccCccceeecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCC
Q 047849 410 LLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGM 489 (651)
Q Consensus 410 ~~~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~ 489 (651)
++.|++|+||||++.+|.|.+|||||++||++++++|+|..|||+.+.|+|||||+.++.+|..||+|.|.|+||+|+|.
T Consensus 2 ~l~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~Lg~f~l~gipp~p~G~ 81 (219)
T 4e81_A 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGM 81 (219)
T ss_dssp CCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTC
T ss_pred eEEEecCcEEEEEEeCCEEEEEEeCcCcccEeEEEEEEeCCCCCceEEEEEEEcCCcccccCCEEEEEEEeCCCCCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEcCCeeEEEEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 047849 490 PQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKS 569 (651)
Q Consensus 490 ~~i~v~f~~d~~G~l~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~ 569 (651)
++|+|+|++|.||+|+|++.+++||++..++|.+..+||++||++|++++++++++|++.+++.+++|.+|+|+|.+++.
T Consensus 82 ~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~Ls~eeI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~~~ 161 (219)
T 4e81_A 82 PQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQ 161 (219)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTTCSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCCCEeeeeeccccCccceEeeeccccccHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred HhhcccCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 047849 570 LGEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAG 624 (651)
Q Consensus 570 l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~ 624 (651)
|+++.++++++++++|.+.|+++++||++++.++|++++++|++.+.+++++.||
T Consensus 162 l~~~~~~l~~~~k~~i~~~l~~~~~~L~~~~~~~i~~~~~~L~~~~~~i~~~~~~ 216 (219)
T 4e81_A 162 VEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQ 216 (219)
T ss_dssp HHHHGGGSCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHHHHC--
T ss_pred HHHhhhhCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9988889999999999999999999999999999999999999999999999887
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=315.32 Aligned_cols=215 Identities=37% Similarity=0.599 Sum_probs=208.2
Q ss_pred EecccCccceeecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCe
Q 047849 412 LDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQ 491 (651)
Q Consensus 412 ~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~ 491 (651)
.|++|+||||++.+|.|.+|||||++||++++.+|++..|+|+.+.|+||||++.++.+|..||+|.|.|+||+|+|.++
T Consensus 1 ~Dv~p~slGie~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~Lg~f~l~gi~~~p~G~~~ 80 (227)
T 1u00_A 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (227)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCcccceEEEEEeCCEEEEEEeCcCccCceEEEEEEecCCCceEEEEEEEecCCccCCCCCEEEEEEEeCCCCCCCCceE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCCeeEEEEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047849 492 IEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLG 571 (651)
Q Consensus 492 i~v~f~~d~~G~l~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~ 571 (651)
|+|+|++|.||+|+|++.++.||++..++|....+||+++|++|++++++++.+|++.+++.+++|+||+|+|++++.|+
T Consensus 81 I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~~~Ls~eei~~~~~~~~~~~~~D~~~~e~~e~kn~le~~i~~~~~~l~ 160 (227)
T 1u00_A 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALA 160 (227)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCcEEEEeecccccccceEEEEeccCCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999998
Q ss_pred hcccCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 047849 572 EYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAGGS 626 (651)
Q Consensus 572 ~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~~~ 626 (651)
++.+++++++++++...|+++++||++++.++|++++++|++.+.++..++|+++
T Consensus 161 ~~~~~~~~~~k~~i~~~l~~~~~wl~~~d~~~~~~~~~~L~~~~~~i~~r~~~~~ 215 (227)
T 1u00_A 161 ADAALLSAAERQVIDDAAAHLSEVAQGDDVDAIEQAIKNVDKQTQDFAARRMDQS 215 (227)
T ss_dssp HHGGGSCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999988899999999999999999999988643
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-39 Score=339.36 Aligned_cols=300 Identities=27% Similarity=0.327 Sum_probs=220.8
Q ss_pred cEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeC-Cc-EEEcHhHHhhhhhCCCchhhhhhhhhCCCCCCh
Q 047849 58 DIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQK-GE-LLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDP 135 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~-~~-~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~ 135 (651)
.+||||||||||++++..++ .++ .+||+|+|.++ ++ .++|+.|+.+..++|.++...
T Consensus 4 ~~igIDlGT~~s~v~~~~~~--~~~-------~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~------------ 62 (344)
T 1jce_A 4 KDIGIDLGTANTLVFLRGKG--IVV-------NEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAI------------ 62 (344)
T ss_dssp CEEEEEECSSEEEEEETTTE--EEE-------EEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEEE------------
T ss_pred ceEEEEcCcCcEEEEECCCC--EEE-------eeCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEEE------------
Confidence 48999999999999875432 222 27999999765 44 479999998877777775321
Q ss_pred HHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHH
Q 047849 136 QTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRI 215 (651)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~ 215 (651)
.|++ +|. +. ....++++++++|++++.. .+++ ...+|||||++|++.||+++++|++.
T Consensus 63 --------~p~~-----~g~--i~---~~~~~~~i~~~~l~~~~~~--~~~~--~~~~vitvP~~~~~~~r~~~~~a~~~ 120 (344)
T 1jce_A 63 --------RPMR-----DGV--IA---DYTVALVMLRYFINKAKGG--MNLF--KPRVVIGVPIGITDVERRAILDAGLE 120 (344)
T ss_dssp --------CCEE-----TTE--ES---SHHHHHHHHHHHHHHHHTS--CCSC--CCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred --------ecCC-----CCe--eC---ChHHHHHHHHHHHHHHhhc--cccC--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 1111 110 00 0013556666666555432 1233 37899999999999999999999999
Q ss_pred cCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEecccccccCCCCccC---HHHHHH---------H
Q 047849 216 AGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFEDEGIDLSKD---RLALQR---------L 282 (651)
Q Consensus 216 AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~~~~~~~~~~---~~~~~~---------L 282 (651)
||++++.+++||+|||++|+.....+ +++|||+||||||+++++.++..+. ...++..+ ...... .
T Consensus 121 aG~~~~~li~ep~Aaa~~~~~~~~~~~~~lVvDiGggttdvsv~~~~~~~~~-~~~~lGG~~id~~l~~~l~~~~~~~~~ 199 (344)
T 1jce_A 121 AGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEVAVISLGSIVTW-ESIRIAGDEMDEAIVQYVRETYRVAIG 199 (344)
T ss_dssp TTCSEEEEEEHHHHHHHHTTCCTTSSSCEEEEEECSSCEEEEEEETTEEEEE-EEESCSHHHHHHHHHHHHHHHHCEECC
T ss_pred cCCCeEeccCCHHHHHHhcCCCCCCCceEEEEEeCCCeEEEEEEEcCCEEee-CCCCccChhHHHHHHHHHHHHhCcccC
Confidence 99999999999999999998875544 8999999999999999986543322 11111111 111111 1
Q ss_pred HHHHHHhhhhcCCCce------eEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCC
Q 047849 283 REAAEKAKIELSSTTQ------TDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANIT--TKDV 354 (651)
Q Consensus 283 ~~~~e~~K~~Ls~~~~------~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~--~~~i 354 (651)
...||++|+.|+.... ..+.++.. +..++.+..++|+|++|+++++|+++++.+.|.++|+.++.. .+.+
T Consensus 200 ~~~ae~~K~~l~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~ 277 (344)
T 1jce_A 200 ERTAERVKIEIGNVFPSKENDELETTVSGI--DLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDII 277 (344)
T ss_dssp HHHHHHHHHHHCBCSCCHHHHHCEEEEEEE--ETTTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccccCCcceEEEecc--ccCCCCceeEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCchhccchh
Confidence 4679999999997642 24444321 111225678999999999999999999999999999987532 1224
Q ss_pred -CeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhcc
Q 047849 355 -DEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILR 403 (651)
Q Consensus 355 -~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~ 403 (651)
+.|+|+||+|++|+|++.|++.|+.++....||+++||+||++++..++
T Consensus 278 ~~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~ 327 (344)
T 1jce_A 278 ERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKVN 327 (344)
T ss_dssp HHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred hCcEEEECccccchHHHHHHHHHHCCCccccCChHHHHHHHHHHHHhChH
Confidence 6899999999999999999999998888889999999999999998654
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-34 Score=270.55 Aligned_cols=164 Identities=70% Similarity=0.978 Sum_probs=154.3
Q ss_pred ceeEEEecccCccceeecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCC
Q 047849 407 KELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAP 486 (651)
Q Consensus 407 ~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~ 486 (651)
..+.+.|++|+||||++.+|.|.+|||||++||++++++|++..|+|+.+.|.|||||+.++.+|..||+|.|.++||+|
T Consensus 18 ~~f~l~DV~P~slGie~~gg~~~~lI~rnt~iP~~k~~~f~T~~DnQ~~v~I~VyqGE~~~~~dn~~LG~f~l~gipp~p 97 (182)
T 3n8e_A 18 LYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAP 97 (182)
T ss_dssp ------CBCSSCEEEECTTSBEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCC
T ss_pred CCEEEEEecCCEEEEEEeCCEEEEEEeCCCccCEEEEEEEEECCCCccEEEEEEEEcCccccccCceEEEEEEcCCCCCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEEEcCCeeEEEEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 047849 487 RGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSI 566 (651)
Q Consensus 487 ~g~~~i~v~f~~d~~G~l~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~ 566 (651)
+|.++|+|+|++|.||+|+|+|.+++||++..++|.+..+||++||++|++++++++++|++.+++.+++|.||+|+|++
T Consensus 98 ~G~~~IeVtf~iD~nGiL~VsA~d~~tg~~~~i~I~~~~~Ls~eei~~mi~~a~~~~~eD~~~~~~~e~kn~le~~iy~~ 177 (182)
T 3n8e_A 98 RGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDT 177 (182)
T ss_dssp TTCSCEEEEEEECTTCCEEEEEEETTTCCEEEEEESCCCCCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCeeEEEEEEEecCCEEEEEEEEcCCCCEeeEEEecCccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999998
Q ss_pred HHHH
Q 047849 567 EKSL 570 (651)
Q Consensus 567 ~~~l 570 (651)
++.|
T Consensus 178 ~~~l 181 (182)
T 3n8e_A 178 ETKM 181 (182)
T ss_dssp SCCC
T ss_pred HHhh
Confidence 7654
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=247.56 Aligned_cols=150 Identities=61% Similarity=0.903 Sum_probs=145.2
Q ss_pred EEecccCccceeecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCC
Q 047849 411 LLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMP 490 (651)
Q Consensus 411 ~~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~ 490 (651)
+.|++|+|||+++.+|.|.+|||||++||++++++|++..|+|+.+.|.||||++.++.+|..||+|.|.|+||+|+|.+
T Consensus 2 ~~Dv~p~slGi~~~gg~~~~lI~rnt~iP~~k~~~f~t~~d~Q~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3h0x_A 2 NADVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ccceeccEEEEEEcCCEEEEEEECcCccCEEEEEEEEeCCCCcceeeeeEEEcCccccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEcCCeeEEEEEEecCCCceeeEEecCC-CCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 047849 491 QIEVTFDIDANGIVTVSAKDKATGKEQQITIRSS-GGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQAD 560 (651)
Q Consensus 491 ~i~v~f~~d~~G~l~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le 560 (651)
+|+|+|++|.||+|+|++.++.||++..++|.+. ++||++||++|++++++|+++|++.+++.+++|.||
T Consensus 82 ~I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~~ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~le 152 (152)
T 3h0x_A 82 QIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASEDASIKAKVESRNKLE 152 (152)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECCTTCCCHHHHHHHHHHHHHTHHHHHHHHHHHHCSCCCC
T ss_pred eEEEEEEEcCCCEEEEEEEEcCCCcEeEEEEecCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999986 789999999999999999999999999999999875
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-32 Score=248.02 Aligned_cols=150 Identities=57% Similarity=0.910 Sum_probs=141.5
Q ss_pred EEecccCccceeecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCC
Q 047849 411 LLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMP 490 (651)
Q Consensus 411 ~~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~ 490 (651)
+.|++|+|||+++.+|.|.+|||||++||++++++|++..|+|+.+.|.||||++..+.+|..||+|.|.|+||+|+|.+
T Consensus 2 ~~Dv~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3dob_A 2 NADVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPRGVP 81 (152)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCC
T ss_pred ceeeecceEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCceEEEEEEEEcCccccccCceeEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEcCCeeEEEEEEecCCCceeeEEecCC-CCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 047849 491 QIEVTFDIDANGIVTVSAKDKATGKEQQITIRSS-GGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQAD 560 (651)
Q Consensus 491 ~i~v~f~~d~~G~l~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le 560 (651)
+|+|+|++|.||+|+|++.++.||++..++|.+. +.||++||++|++++++|+++|++.+++.+++|.||
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~le 152 (152)
T 3dob_A 82 QIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEKEDGEQRERVQARNQLE 152 (152)
T ss_dssp CEEEEEEECTTCCEEEEEEETTTCCEEEEEECCC----CHHHHHHHHHHHHHTHHHHHHHHHTCCCCSEEC
T ss_pred eEEEEEEeCCCCeEEEEEEEcCCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999986 569999999999999999999999999999988765
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-32 Score=249.35 Aligned_cols=150 Identities=75% Similarity=1.077 Sum_probs=143.5
Q ss_pred EEecccCccceeecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCC
Q 047849 411 LLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMP 490 (651)
Q Consensus 411 ~~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~ 490 (651)
+.|++|+|||+++.+|.|.+|||||++||++++++|++..|||+.+.|.||||++.++.+|..||+|.|.|+||+|+|.+
T Consensus 2 ~~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (151)
T 3dqg_A 2 NADVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVP 81 (151)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCS
T ss_pred cceeeeeEEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCcceEEEEEEEcCCcccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEcCCeeEEEEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 047849 491 QIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQAD 560 (651)
Q Consensus 491 ~i~v~f~~d~~G~l~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le 560 (651)
+|+|+|++|.||+|+|++.|+.||++..++|.+..+||++||++|++++++|+++|++.+++.+++|.||
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~~e 151 (151)
T 3dqg_A 82 QVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQIENMIKEAEKNAAEDAKRKELVEVINQAE 151 (151)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECSSSSCHHHHHHHHHHHHHHHHHHTTCCCEEECBCCCC
T ss_pred EEEEEEEeccCcEEEEEEEEccCCCEeEEEEecCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999988899999999999999999999999988888888764
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-29 Score=232.43 Aligned_cols=150 Identities=55% Similarity=0.903 Sum_probs=144.0
Q ss_pred EEecccCccceeecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCC
Q 047849 411 LLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMP 490 (651)
Q Consensus 411 ~~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~ 490 (651)
+.|++|++|||++.+|.|.+||+||++||++++.+|++..|||+.+.|+||||++.++.+|..||+|.|.++||+|+|.+
T Consensus 2 v~Dv~p~slGi~~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~lg~~~l~gipp~p~G~~ 81 (152)
T 2op6_A 2 NADVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ceEeecccEEEEEeCCEEEEEEeCCCcccEeEEEEEEeCCCCCcEEEEEEEEeCCccCccCCEeEEEEEECCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEcCCeeEEEEEEecCCCceeeEEecCC-CCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 047849 491 QIEVTFDIDANGIVTVSAKDKATGKEQQITIRSS-GGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQAD 560 (651)
Q Consensus 491 ~i~v~f~~d~~G~l~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le 560 (651)
+|+|+|++|.||+|+|++.++.+|++..++|... ++||++||+++++++++++.+|++.+++.++||.||
T Consensus 82 ~I~V~f~id~nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~kn~~e 152 (152)
T 2op6_A 82 QIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAADDQAQKEKVESRNELE 152 (152)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTCCEEEEEECSSSSCCCHHHHHHHHHHHHHTHHHHHHHHHHSCCCSEEC
T ss_pred eEEEEEEECCCcEEEEEEEEecCCcEEEEEeeccccCCCHHHHHHHHHHHHHhHhccHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999876 679999999999999999999999999999998765
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-27 Score=253.73 Aligned_cols=294 Identities=14% Similarity=0.163 Sum_probs=186.0
Q ss_pred CCCcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCC
Q 047849 55 AGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDD 134 (651)
Q Consensus 55 ~~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~ 134 (651)
....++|||+|||+++++++.++.+.+. ..|...+|+.+. +.....+++.+...+|+++++. .
T Consensus 11 ~~~~~vgiDiGt~~i~~~~~~~~~~~i~--~~g~~~~ps~~~-------------~~g~i~d~~~~~~~ik~~~~~~-~- 73 (377)
T 2ych_A 11 PRVEALGLEIGASALKLVEVSGNPPALK--ALASRPTPPGLL-------------MEGMVAEPAALAQEIKELLLEA-R- 73 (377)
T ss_dssp CCCCCEEEEECSSEEEEEEEETTTTEEE--EEEEEECCTTSE-------------ETTEESCHHHHHHHHHHHHHHH-T-
T ss_pred CCCceEEEEeCCCeEEEEEEeCCceEEE--EEEeEECCCCcc-------------cCCCcCCHHHHHHHHHHHHHHc-C-
Confidence 3456899999999999999887766552 344555565332 2234567888899999998751 0
Q ss_pred hHHHHHhhcceeEEEECCCCCeEEE-eCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHH--------
Q 047849 135 PQTQKEMQMVSYKIVRAPNGDAWVE-ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQ-------- 205 (651)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~q-------- 205 (651)
.+ ...-.+..+....... .....++++++... ++..++++++.++.+++|.+|. .+.+
T Consensus 74 ------~~-~~~v~~~i~~~~~~~~~~~~~~v~~~el~~~----i~~ea~~~~~~~~~~~vid~~~--~~~~~~~~~~~~ 140 (377)
T 2ych_A 74 ------TR-KRYVVTALSNLAVILRPIQVPKMPLKEMEEA----VRWEAERYIPFPIDEVVLDFAP--LTPLSEVQEGEQ 140 (377)
T ss_dssp ------CC-CCEEEEEECGGGCEEEEEEEECCCHHHHHHH----HHHHHGGGCSSCC-CEEEEEEE--SSCGGGSCTTSE
T ss_pred ------CC-cceEEEEecCCcEEEEEEECCCCCHHHHHHH----HHHHHhhcCCCChhHceEEEEE--eCCCCCCCCcce
Confidence 00 0001111122222111 12245677776543 3457888999999999999983 3332
Q ss_pred ------------HHHHHHHHHHcCCceEEeecchHHHhhhhccccC---CCeEEEEEeCCcceEEEEEEEeccccc----
Q 047849 206 ------------RQATKDAGRIAGLDVQRIINEPTAASLSYGMNNK---EGLIAVFDLGGGTFDVSILEISNGVFE---- 266 (651)
Q Consensus 206 ------------r~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~---~~~vlVvD~GggT~Dvsv~~~~~~~~~---- 266 (651)
.+++++|++.|||++..++.||+|||++|+.... +..++|+|+||||||+++++.+...+.
T Consensus 141 ~~v~~va~~~~~v~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~~~~~~~ 220 (377)
T 2ych_A 141 VQVMVAAARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLAVRVLT 220 (377)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEEEEEEES
T ss_pred eEEEEEEecHHHHHHHHHHHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEEEEEeee
Confidence 3889999999999999999999999999865322 237999999999999999974332222
Q ss_pred ccCCCCccCH-HHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 047849 267 DEGIDLSKDR-LALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLK 345 (651)
Q Consensus 267 ~~~~~~~~~~-~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~ 345 (651)
..|.++...- ..+...+..||++|+.++.........+..... ......++|++|++++++.++++...|++.|+
T Consensus 221 ~GG~~i~~~i~~~~~~~~~~aE~~K~~~~~~~~~~~~~~~~i~~----~~~~~~i~~~~~~~~i~~~~~~i~~~i~~~l~ 296 (377)
T 2ych_A 221 LSGKDFTEAIARSFNLDLLAAEEVKRTYGMATLPTEDEELLLDF----DAERERYSPGRIYDAIRPVLVELTQELRRSLE 296 (377)
T ss_dssp CSHHHHHHHHHHHTTCCHHHHHHHHHHTC-----------------------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHhhccccccccccccccccc----ccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111100 001112568999999998653322111100000 12346799999999999999999999999998
Q ss_pred H--cCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCC
Q 047849 346 D--ANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPS 382 (651)
Q Consensus 346 ~--a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~ 382 (651)
. ++.....++.|+|+||+|++|.|++.+++.|+.++.
T Consensus 297 ~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~~~v~ 335 (377)
T 2ych_A 297 FFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLGVNLE 335 (377)
T ss_dssp HHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHTSEEE
T ss_pred HHHhccCCCCcCEEEEECccccchhHHHHHHHHhCCCeE
Confidence 5 356667899999999999999999999999986543
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=222.50 Aligned_cols=196 Identities=24% Similarity=0.318 Sum_probs=160.0
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCceEEeecchHHHhhhhccccCCCeEEEEEe
Q 047849 169 QIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDL 248 (651)
Q Consensus 169 ev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~ 248 (651)
+....+|+++++.++.+.+.....+++|+|++|+..+|++++++++.+|+++..++.||+|++++|+.. ..+|+|+
T Consensus 71 ~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~----~~~viDi 146 (272)
T 3h1q_A 71 IGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN----DGIVVDI 146 (272)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHTCS----SEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHcCC----CEEEEEE
Confidence 455778899999999888888899999999999999999999999999999999999999999998764 3699999
Q ss_pred CCcceEEEEEEEecccccccCCCCccCH--HHH----HHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecH
Q 047849 249 GGGTFDVSILEISNGVFEDEGIDLSKDR--LAL----QRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTR 322 (651)
Q Consensus 249 GggT~Dvsv~~~~~~~~~~~~~~~~~~~--~~~----~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr 322 (651)
||||++++++..+...+. ...++.... ..+ ..-...+|++|+.++ ++
T Consensus 147 Gggst~~~~~~~g~~~~~-~~~~~Gg~~~~~~l~~~l~~~~~~ae~~k~~~~--------------------------~~ 199 (272)
T 3h1q_A 147 GGGTTGIAVIEKGKITAT-FDEPTGGTHLSLVLAGSYKIPFEEAETIKKDFS--------------------------RH 199 (272)
T ss_dssp CSSCEEEEEEETTEEEEE-CCBSCCHHHHHHHHHHHHTCCHHHHHHHHHSST--------------------------TH
T ss_pred CCCcEEEEEEECCEEEEE-ecCCCcHHHHHHHHHHHhCCCHHHHHHHHHhcC--------------------------CH
Confidence 999999999873322221 112221111 011 112467899998875 57
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHh
Q 047849 323 SKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 323 ~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a 399 (651)
++++++++++++++...+.+.++..+ +++.|+|+||++++|.+++.|++.|+.++..+.||++++|+|||++|
T Consensus 200 ~~~~~~~~~~~~~i~~~i~~~l~~~~----~~~~ivL~GG~a~~~~l~~~l~~~l~~~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 200 REIMRVVRPVIEKMALIVKEVIKNYD----QTLPVYVVGGTAYLTGFSEEFSRFLGKEVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSC----SSCCEEEESGGGGSTTHHHHHHHHHSSCCBCCSSGGGHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEEECCccchhhHHHHHHHHhCCCccccCChHHHHHHHHHhcC
Confidence 89999999999999999999998753 47899999999999999999999999999889999999999999875
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-25 Score=237.85 Aligned_cols=214 Identities=17% Similarity=0.141 Sum_probs=150.5
Q ss_pred eeChhhHHHHHHHHHHHHHHHhhCCCCCeEE--EEecCCCCHHHHHHHHHHHHHc--------C------CceEEeecch
Q 047849 164 QYSPSQIGAFVLTKMKETAESYLGKSVSKAV--ITVPAYFNDAQRQATKDAGRIA--------G------LDVQRIINEP 227 (651)
Q Consensus 164 ~~s~eev~a~~L~~l~~~a~~~~~~~~~~~V--ITVPa~f~~~qr~~l~~Aa~~A--------G------l~~~~li~Ep 227 (651)
.+.+++..++++..|+..++...+.+ .++| |+||++|++.||+++++++..+ | ++.+++++||
T Consensus 94 ~~~~~~~~~ll~~~l~~~~~~~~~~~-~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep 172 (346)
T 2fsj_A 94 RLASKEAFPLIAAALWESGIHNDGSP-VDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQG 172 (346)
T ss_dssp CTTSTTTHHHHHHHHHHHCCCC---C-EEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETT
T ss_pred cccChhHHHHHHHHHHHhhhccCCCc-eEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccH
Confidence 44567778888888877653333333 5799 9999999999999999997776 4 3558899999
Q ss_pred HHHhhhhccc--cC-C-CeEEEEEeCCcceEEEEEEEeccccc---ccCCCCccCHHHHHHHHHHHHHhhhhcCC--C-c
Q 047849 228 TAASLSYGMN--NK-E-GLIAVFDLGGGTFDVSILEISNGVFE---DEGIDLSKDRLALQRLREAAEKAKIELSS--T-T 297 (651)
Q Consensus 228 ~AAAl~y~~~--~~-~-~~vlVvD~GggT~Dvsv~~~~~~~~~---~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~--~-~ 297 (651)
+|||++|... .. . .+++|||+||||||++++++.++... .....+..+ .....+ ++..|+.... . .
T Consensus 173 ~AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~~v~~~s~~~~lGg~-~i~~~I---~~~i~~~~g~~~~i~ 248 (346)
T 2fsj_A 173 VGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVG-DAISAL---SRKIAKETGFVVPFD 248 (346)
T ss_dssp HHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEETTTTEECGGGCEEESCCHH-HHHHHH---HHHHHHHHCCCCCHH
T ss_pred HHHHHHhhccccccccCCcEEEEECCCCcEEEEEEEecCCEEEeecCCCcchhHH-HHHHHH---HHHHHHHhCCCcCCC
Confidence 9999998211 12 2 48999999999999999997665321 111122211 111112 2333333322 1 0
Q ss_pred ------eeEEEecceeccCCCCeeEEEEecHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHH
Q 047849 298 ------QTDINLPFITADASGAKHLNITLTRSKF-ETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQ 370 (651)
Q Consensus 298 ------~~~i~i~~~~~~~~g~~~~~~~itr~~f-e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~ 370 (651)
...+.+ .| . .++++++ +++++++++++.+.+++.|+++ .++++.|+|+||+|++ ++
T Consensus 249 ~~~~e~~~~~~~-------~g-~----~~~~~~i~~~~i~~~~~~i~~~i~~~l~~~---~~~i~~IvL~GGga~l--l~ 311 (346)
T 2fsj_A 249 LAQEALSHPVMF-------RQ-K----QVGGPEVSGPILEDLANRIIENIRLNLRGE---VDRVTSLIPVGGGSNL--IG 311 (346)
T ss_dssp HHHHHTTSCEEE-------TT-E----EECSHHHHHHHHHHHHHHHHHHHHHHHGGG---GGGEEEEEEESTTHHH--HG
T ss_pred HHHHhcCCeEeE-------CC-c----cCCHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhcccEEEEECCcHHH--HH
Confidence 001111 11 2 3568999 9999999999999999999876 4578999999999999 99
Q ss_pred HHHHHHhcCCCCC---cCCccchheehhHHHhh
Q 047849 371 EVVSEIFGKSPSK---GVNPDEAVALGAAIQGG 400 (651)
Q Consensus 371 ~~l~~~f~~~~~~---~~~p~~aVA~GAa~~a~ 400 (651)
+.|++.|+. ... ..||++|+|.|+..++.
T Consensus 312 ~~l~~~~~~-~~i~~~~~~P~~ava~G~~~~~~ 343 (346)
T 2fsj_A 312 DRFEEIAPG-TLVKIKPEDLQFANALGYRDAAE 343 (346)
T ss_dssp GGGGGGSTT-CBCCCCTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHCcC-cEEeccCCCcHHHHHHHHHHHHh
Confidence 999999974 334 67999999999998765
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-24 Score=232.78 Aligned_cols=191 Identities=14% Similarity=0.118 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHcCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccCH-HH
Q 047849 205 QRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKDR-LA 278 (651)
Q Consensus 205 qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~~-~~ 278 (651)
..+.+.+|++.|||++..++.||+|||++|..+...+ .++|||+||||||+++++-+.-.+. ..|.+++.+- ..
T Consensus 169 ~v~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~~g~~~~~~~i~~GG~~it~dIa~~ 248 (419)
T 4a2a_A 169 VYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAV 248 (419)
T ss_dssp HHHHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEETTEEEEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEECCEEEEEEecccHHHHHHHHHHHH
Confidence 4678999999999999999999999999987654333 8999999999999999973322222 2222332221 23
Q ss_pred HHHHHHHHHHhhhhcCCC-----ceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCC----
Q 047849 279 LQRLREAAEKAKIELSST-----TQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANI---- 349 (651)
Q Consensus 279 ~~~L~~~~e~~K~~Ls~~-----~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~---- 349 (651)
+......||++|+.++.. .+..+.++... ......++|++|+++++|.++++.+.|++.|+.++.
T Consensus 249 l~~~~~~AE~iK~~~g~a~~~~~~~~~i~v~~~~------~~~~~~is~~~l~~ii~p~veei~~~V~~~L~~~~~~~p~ 322 (419)
T 4a2a_A 249 LDTSFEESERLIITHGNAVYNDLKEEEIQYRGLD------GNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVE 322 (419)
T ss_dssp HTCCHHHHHHHHHHHCCSCCTTCCCCEEEEECTT------SCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HCCCHHHHHHHHHHhccCcccCCCCceEEEeecC------CccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 444578999999999753 33455555432 235689999999999999999999999999999987
Q ss_pred --CCCCCCeEEEecCccCcHhHHHHHHHHhcCCCC--C---------------cCCccchheehhHHHhhh
Q 047849 350 --TTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPS--K---------------GVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 350 --~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~--~---------------~~~p~~aVA~GAa~~a~~ 401 (651)
....++.|+|+||+|++|.|++.+++.||.++. . ..+|..++|.|.++++..
T Consensus 323 ~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~~vri~~~~~~~p~~~~~~~~~~~~P~~~t~~Gl~~~~~~ 393 (419)
T 4a2a_A 323 EGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVFAVSE 393 (419)
T ss_dssp ------TTCEEEESGGGGSTTHHHHHHHHHTSCEEECCGGGSSSCCCBTCHHHHTCGGGHHHHHTTCC---
T ss_pred ccccccCCEEEEECchhchhhHHHHHHHHHCCCeEEEecCCCCchhccCcccccCCchHHHHHHHHHHHhh
Confidence 345689999999999999999999999987542 1 138999999999998865
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-24 Score=192.92 Aligned_cols=121 Identities=72% Similarity=1.051 Sum_probs=111.0
Q ss_pred ceeEEEecccCccceeecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCC
Q 047849 407 KELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAP 486 (651)
Q Consensus 407 ~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~ 486 (651)
+++.+.|++|++||+++.+|.|.+||+||+++|++++++|++..|||+.+.|+|||||+..+.+|..||+|.|.++||+|
T Consensus 15 ~d~~l~Dv~p~slGIe~~~g~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~~n~~Lg~f~l~gipp~p 94 (135)
T 1q5l_A 15 RGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAP 94 (135)
T ss_dssp ------CCCSSCCCEEETTTEECCSSCSSSCSSBCCEEEECCCSSSCSSCEEEEEECCSSSCSSSEEEEEEECCCCCSCC
T ss_pred CcEEEEEeecCcEEEEEECCEEEEEEcCCCeEeEeEeEEEEeccCCceEEEEEEEEeCCcccccCcEEEEEEEeCCCCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEEEcCCeeEEEEEEecCCCceeeEEecCCCCC
Q 047849 487 RGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGL 527 (651)
Q Consensus 487 ~g~~~i~v~f~~d~~G~l~v~~~~~~t~~~~~~~i~~~~~l 527 (651)
+|.++|+|+|++|.||+|+|++.|+.||++..++|....+|
T Consensus 95 ~G~~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~~~l 135 (135)
T 1q5l_A 95 RGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGL 135 (135)
T ss_dssp SSSCCEEEEEEECTTSEEEEEEEETTTCCEEEEEEECSCCC
T ss_pred CceeEEEEEEEECCCCEEEEEEEECCCCCEEEEEEecCCCC
Confidence 99999999999999999999999999999999999876443
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-23 Score=226.18 Aligned_cols=291 Identities=15% Similarity=0.166 Sum_probs=185.5
Q ss_pred CCcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCC-----------------cEEEcHhHHhhhhhCCC
Q 047849 56 GNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKG-----------------ELLVGTPAKRQAVTNPT 118 (651)
Q Consensus 56 ~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~-----------------~~~vG~~A~~~~~~~p~ 118 (651)
....|+||+||+++++++..++.|.++ +||+|+...+. ..++|+.|... |
T Consensus 4 ~~~~ivID~Gs~~~k~G~~~~~~p~~~--------~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~~~----~- 70 (418)
T 1k8k_A 4 RLPACVVDCGTGYTKLGYAGNTEPQFI--------IPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEK----P- 70 (418)
T ss_dssp CSCCEEEEECSSEEEEEETTCSSCSEE--------EESCEEECC-----------CCCTTGGGCEEEGGGGTSC----T-
T ss_pred CCCeEEEECCCCeEEEeeCCCCCCCCc--------CCceEEEECcccccccccccccccccccCeEEChHHHhc----C-
Confidence 345799999999999999866666543 47777764321 25566665432 1
Q ss_pred chhhhhhhhhCCCCCChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCC--CCCeEEEE
Q 047849 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGK--SVSKAVIT 196 (651)
Q Consensus 119 ~~i~~~Kr~lg~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~--~~~~~VIT 196 (651)
+ ..+++ |+ .+|.....+ ....+++++.. +.++. ....++||
T Consensus 71 ~--~~~~~------------------pi-------------~~G~i~d~d-~~e~i~~~~~~---~~L~~~~~~~~vvit 113 (418)
T 1k8k_A 71 T--YATKW------------------PI-------------RHGIVEDWD-LMERFMEQVIF---KYLRAEPEDHYFLLT 113 (418)
T ss_dssp T--SEEEC------------------CE-------------ETTEESCHH-HHHHHHHHHHH---TTTCCCGGGCCEEEE
T ss_pred C--CEEec------------------cc-------------cCCEECCHH-HHHHHHHHHHH---hccCCCCCCCcEEEE
Confidence 0 11111 11 011111222 23334444432 23432 23579999
Q ss_pred ecCCCCHHHHHHHHHHH-HHcCCceEEeecchHHHhhh-hcc---ccCCCeEEEEEeCCcceEEEEEEEecccccc--cC
Q 047849 197 VPAYFNDAQRQATKDAG-RIAGLDVQRIINEPTAASLS-YGM---NNKEGLIAVFDLGGGTFDVSILEISNGVFED--EG 269 (651)
Q Consensus 197 VPa~f~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAAl~-y~~---~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~~--~~ 269 (651)
+|++|+..+|+++.+++ +.+|++.+.+++||+||+++ |.. ...+.+.||||+||||||++++.-+. .... ..
T Consensus 114 ~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~~~~glVvDiG~gtt~v~~v~~G~-~~~~~~~~ 192 (418)
T 1k8k_A 114 EPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGY-VIGSCIKH 192 (418)
T ss_dssp ECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSCCCCEEEEEESSSCEEEEEEETTE-ECGGGCEE
T ss_pred eCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCCCCeEEEEEcCCCceEEEEeECCE-EcccceEE
Confidence 99999999999999999 88999999999999999987 521 11122679999999999999986221 1111 11
Q ss_pred CCCccCH--HHHHH-------------HHHHHHHhhhhcCCCce-----------------eEEEecceeccCCCCeeEE
Q 047849 270 IDLSKDR--LALQR-------------LREAAEKAKIELSSTTQ-----------------TDINLPFITADASGAKHLN 317 (651)
Q Consensus 270 ~~~~~~~--~~~~~-------------L~~~~e~~K~~Ls~~~~-----------------~~i~i~~~~~~~~g~~~~~ 317 (651)
.++..+. ..+.+ -...+|++|+.++.... ..+.++.. ..+....
T Consensus 193 ~~lGG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~~lpd~----~~~~~~~ 268 (418)
T 1k8k_A 193 IPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINA----ISKKEFS 268 (418)
T ss_dssp ESCSHHHHHHHHHHHHHTTCCCCCGGGHHHHHHHHHHHHCCCCSCHHHHHHHHHHSGGGTCEEEEEECT----TTCCEEE
T ss_pred EeCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhchhcccHHHHHHhhcccccccceeEECCCC----CCCcccE
Confidence 1111110 00111 13568889998865321 12333221 1124567
Q ss_pred EEecHHHH---HHHHHHHH------HHHHHHHHHHHHHcC--CCCCCCCeEEEecCccCcHhHHHHHHHHhcCC------
Q 047849 318 ITLTRSKF---ETLVNNLI------ERTRAPCKNCLKDAN--ITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKS------ 380 (651)
Q Consensus 318 ~~itr~~f---e~l~~~~~------~~i~~~i~~~l~~a~--~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~------ 380 (651)
+.+++++| |.+++|.+ ..+.++|.+.|..+. +....++.|+|+||+|++|.+++.|++.++..
T Consensus 269 i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~~rl~~el~~~~~~~~~ 348 (418)
T 1k8k_A 269 IDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLK 348 (418)
T ss_dssp EEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHH
T ss_pred EEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccHHHHHHHHHHHhhccccc
Confidence 89999999 55655542 568888999998864 33455788999999999999999999876421
Q ss_pred ------------------CCCcCCccchheehhHHHhhh
Q 047849 381 ------------------PSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 381 ------------------~~~~~~p~~aVA~GAa~~a~~ 401 (651)
+..+.+|..++.+||+++|..
T Consensus 349 ~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl 387 (418)
T 1k8k_A 349 LSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAST 387 (418)
T ss_dssp HHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTS
T ss_pred cccccccccCCCCceeEEEeCCCccccceeHhHHHHHcC
Confidence 122457789999999999874
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=7.6e-23 Score=218.85 Aligned_cols=282 Identities=16% Similarity=0.146 Sum_probs=178.7
Q ss_pred cEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeC---------CcEEEcHhHHhhhhhCCCchhhhhhhhh
Q 047849 58 DIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQK---------GELLVGTPAKRQAVTNPTNTLFGTKRLI 128 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~---------~~~~vG~~A~~~~~~~p~~~i~~~Kr~l 128 (651)
..|+||+||+++++++..++.|.++ +||+|+...+ ...++|+.|.... . ...+++
T Consensus 6 ~~ivID~Gs~~~k~G~~~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~~----~--~~~~~~-- 69 (375)
T 2fxu_A 6 TALVCDNGSGLVKAGFAGDDAPRAV--------FPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR----G--ILTLKY-- 69 (375)
T ss_dssp CCEEEEECSSEEEEEETTCSSCSEE--------EECCEEEECTTTC-------CCEEHHHHHHHT----T--SEEEEC--
T ss_pred ceEEEECCCCeEEEEECCCCCCcee--------eccccccccccccccCCCCCCeEechhHhhcC----c--ccceec--
Confidence 4789999999999999877666533 2666655322 3467888886531 0 011111
Q ss_pred CCCCCChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCC--CCeEEEEecCCCCHHHH
Q 047849 129 GRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKS--VSKAVITVPAYFNDAQR 206 (651)
Q Consensus 129 g~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~--~~~~VITVPa~f~~~qr 206 (651)
|+. +|..... +....+++++.. +.++.. ...++||+|++++..+|
T Consensus 70 ----------------Pi~-------------~G~i~d~-d~~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~~~~r 116 (375)
T 2fxu_A 70 ----------------PIE-------------HGIITNW-DDMEKIWHHTFY---NELRVAPEEHPTLLTEAPLNPKANR 116 (375)
T ss_dssp ----------------SEE-------------TTEECCH-HHHHHHHHHHHH---TTSCCCGGGSCEEEEECTTCCHHHH
T ss_pred ----------------ccc-------------CCcccCH-HHHHHHHHHHHH---HhcCCCCcCCcEEEEeCCCCcHHHH
Confidence 110 1111122 223334444431 334332 24699999999999999
Q ss_pred HHHHHHH-HHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEEEeccccc------ccCCCCccCHHHH
Q 047849 207 QATKDAG-RIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFE------DEGIDLSKDRLAL 279 (651)
Q Consensus 207 ~~l~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~------~~~~~~~~~~~~~ 279 (651)
+++.+++ +.+|++.+.+++||+|||++|+.. +.||||+||||||++.+.-+.-... ..|.+++..-..+
T Consensus 117 ~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~~----~~lVvDiG~gtt~v~~v~~G~~~~~~~~~~~~GG~~lt~~l~~~ 192 (375)
T 2fxu_A 117 EKMTQIMFETFNVPAMYVAIQAVLSLYASGRT----TGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKI 192 (375)
T ss_dssp HHHHHHHHHTTCCSEEEEEEHHHHHHHHTTCS----SEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcceEEEccchheeeeecCCC----eEEEEEcCCCceEEeEeECCEEeccceEEeccCHHHHHHHHHHH
Confidence 9888765 788999999999999999999853 6899999999999987752211110 1111111110000
Q ss_pred H----------HHHHHHHHhhhhcCCC----------------ceeEEEecceeccCCCCeeEEEEecHHHH---HHHHH
Q 047849 280 Q----------RLREAAEKAKIELSST----------------TQTDINLPFITADASGAKHLNITLTRSKF---ETLVN 330 (651)
Q Consensus 280 ~----------~L~~~~e~~K~~Ls~~----------------~~~~i~i~~~~~~~~g~~~~~~~itr~~f---e~l~~ 330 (651)
. .-...+|++|+.++.. ....+.++ ....+.++++.| |.+++
T Consensus 193 l~~~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~lp---------dg~~i~i~~erf~~~E~lf~ 263 (375)
T 2fxu_A 193 LTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP---------DGQVITIGNERFRCPETLFQ 263 (375)
T ss_dssp HHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECT---------TSCEEEESTHHHHHHHTTTC
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEECC---------CCCEEEEChhheechHhhCC
Confidence 0 0124577777776532 12222222 112578888887 44555
Q ss_pred HH-----HHHHHHHHHHHHHHcC--CCCCCCCeEEEecCccCcHhHHHHHHHHhc--------CCCCCcCCccchheehh
Q 047849 331 NL-----IERTRAPCKNCLKDAN--ITTKDVDEVLLVGGMTRVPKVQEVVSEIFG--------KSPSKGVNPDEAVALGA 395 (651)
Q Consensus 331 ~~-----~~~i~~~i~~~l~~a~--~~~~~i~~VvLvGGss~ip~i~~~l~~~f~--------~~~~~~~~p~~aVA~GA 395 (651)
|. ...+.++|.+.|..+. +....++.|+|+||+|++|.+++.|++.++ .++..+.+|..++++||
T Consensus 264 p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v~v~~~~~p~~~~w~G~ 343 (375)
T 2fxu_A 264 PSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG 343 (375)
T ss_dssp GGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHH
T ss_pred CccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeEEEEcCCCCCccEEcch
Confidence 53 2457778888887653 223345789999999999999999999885 22334679999999999
Q ss_pred HHHhhh
Q 047849 396 AIQGGI 401 (651)
Q Consensus 396 a~~a~~ 401 (651)
+++|..
T Consensus 344 si~a~l 349 (375)
T 2fxu_A 344 SILASL 349 (375)
T ss_dssp HHHHHC
T ss_pred HHhhCc
Confidence 999983
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-20 Score=194.87 Aligned_cols=211 Identities=17% Similarity=0.170 Sum_probs=128.9
Q ss_pred eeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCC-CCHH--HH--HHHHH--------H----HHHcCCceEEeec
Q 047849 163 QQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAY-FNDA--QR--QATKD--------A----GRIAGLDVQRIIN 225 (651)
Q Consensus 163 ~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~-f~~~--qr--~~l~~--------A----a~~AGl~~~~li~ 225 (651)
..+++..+++.+ ..|+. +. ..+.+ .++|+++|.. |... || +++.+ + ++.+++..+.+++
T Consensus 72 ~~~~~~~l~~i~-~aL~~-~~-~~~~~-~~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 147 (320)
T 2zgy_A 72 WQYSDVNVVAVH-HALLT-SG-LPVSE-VDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMP 147 (320)
T ss_dssp GGGSHHHHHHHH-HHHHH-HS-CCSCE-EEEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEE
T ss_pred ccchHHHHHHHH-HHHHH-cC-CCCce-EEEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEec
Confidence 356777776653 44443 21 12222 3699999987 6531 22 21211 1 2345567889999
Q ss_pred chHHHhhhhccccCC-CeEEEEEeCCcceEEEEEEEeccccc---c-cCCCCccCH---HHHHHH--------HHHHHHh
Q 047849 226 EPTAASLSYGMNNKE-GLIAVFDLGGGTFDVSILEISNGVFE---D-EGIDLSKDR---LALQRL--------REAAEKA 289 (651)
Q Consensus 226 Ep~AAAl~y~~~~~~-~~vlVvD~GggT~Dvsv~~~~~~~~~---~-~~~~~~~~~---~~~~~L--------~~~~e~~ 289 (651)
||.||+++|...... ..++|+|+||||+|+++++ ++.+. . ....+..+. .....+ ...+|++
T Consensus 148 e~~aa~~~~~~~~~~~~~~~vvDiGggttd~~v~~--~g~~~v~~~~~~~~lGg~~~~~~I~~~l~~~~~~i~~~~ae~~ 225 (320)
T 2zgy_A 148 ESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGSSYLADDI 225 (320)
T ss_dssp SSHHHHHHHHHHSCTTCEEEEEEECSSCEEEEEEE--GGGCCEEEEEEECSCCTHHHHHHHHHHTTCCSBGGGHHHHHHH
T ss_pred CcHHHHHhhhccccCCCCEEEEEcCCCeEEEEEEe--CCeeEEeeecCCccccHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 999999998754333 3899999999999999998 22221 0 111111110 000111 2235555
Q ss_pred -hhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHh
Q 047849 290 -KIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPK 368 (651)
Q Consensus 290 -K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~ 368 (651)
|..- . . . ..... ....-..+++.+++++.++++.+.|.+.+++. .+++.|+|+||+|++
T Consensus 226 lk~~~--~-~----~-~~~~~------i~~~~~~~~~~~~i~~~~~~~~~~i~~~i~~~----~~~~~vvl~GGga~l-- 285 (320)
T 2zgy_A 226 IIHRK--D-N----N-YLKQR------INDENKISIVTEAMNEALRKLEQRVLNTLNEF----SGYTHVMVIGGGAEL-- 285 (320)
T ss_dssp HHTTT--C-H----H-HHHHH------SSSSCTHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCCEEEEESTTHHH--
T ss_pred HHHhh--h-h----h-cccce------ecCchhhHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCeEEEECChHHH--
Confidence 4330 0 0 0 00000 00011345666777777777777777777652 568999999999987
Q ss_pred HHHHHHHHhcC---CCCCcCCccchheehhHHHh
Q 047849 369 VQEVVSEIFGK---SPSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 369 i~~~l~~~f~~---~~~~~~~p~~aVA~GAa~~a 399 (651)
+++.|++.|+. ++....||++|+|+||++++
T Consensus 286 l~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 286 ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp HHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 99999999987 46778999999999999875
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-19 Score=192.99 Aligned_cols=198 Identities=17% Similarity=0.154 Sum_probs=74.7
Q ss_pred CeEEEEecCCCCHHHHHHHHHHH-HHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEEEeccccc-cc
Q 047849 191 SKAVITVPAYFNDAQRQATKDAG-RIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFE-DE 268 (651)
Q Consensus 191 ~~~VITVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~-~~ 268 (651)
..++||+|++++..+|+++.+++ +.+|++.+.+++||.||+++++.. +.+|+|+|+|||+++.+.-+.-... ..
T Consensus 105 ~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~~----~~lVVDiG~g~T~v~pv~~G~~~~~~~~ 180 (394)
T 1k8k_B 105 CKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLL----TGVVVDSGDGVTHICPVYEGFSLPHLTR 180 (394)
T ss_dssp -----------------------------------------------------CCEEEECSSCEEEECEETTEECSTTCE
T ss_pred CcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCCc----eEEEEEcCCCceEeeeeECCEEcccceE
Confidence 45999999999999999888865 778999999999999999988753 5699999999999987752111110 00
Q ss_pred CCCCccCH--HHHHH-------------HHHHHHHhhhhcCCCce----------------eEEEecceeccCCCCeeEE
Q 047849 269 GIDLSKDR--LALQR-------------LREAAEKAKIELSSTTQ----------------TDINLPFITADASGAKHLN 317 (651)
Q Consensus 269 ~~~~~~~~--~~~~~-------------L~~~~e~~K~~Ls~~~~----------------~~i~i~~~~~~~~g~~~~~ 317 (651)
..++..+. ..+.+ -...+|++|+.++.... ..+.++ ....
T Consensus 181 ~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~~~~~lp---------dg~~ 251 (394)
T 1k8k_B 181 RLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTLP---------DGRI 251 (394)
T ss_dssp EESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECT---------TSCE
T ss_pred EeeccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhheeEecCHHHHHHhhccCCcCceEEECC---------CCCE
Confidence 11111110 01111 12457888887754321 111111 1125
Q ss_pred EEecHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCCC--CCCCCeEEEecCccCcHhHHHHHHHHhcC--------
Q 047849 318 ITLTRSKF---ETLVNNL-----IERTRAPCKNCLKDANIT--TKDVDEVLLVGGMTRVPKVQEVVSEIFGK-------- 379 (651)
Q Consensus 318 ~~itr~~f---e~l~~~~-----~~~i~~~i~~~l~~a~~~--~~~i~~VvLvGGss~ip~i~~~l~~~f~~-------- 379 (651)
+.|+++.| |-+++|- ...+.++|.+.|..+..+ ..-.+.|+|+||+|.+|.+.+.|++.++.
T Consensus 252 i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~el~~~~~~~~~~ 331 (394)
T 1k8k_B 252 IKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLK 331 (394)
T ss_dssp EEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHHHHHHHHHTCS
T ss_pred EEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHHHHHHHHHhhhhcc
Confidence 67788877 3344442 234677788888876432 22347899999999999999999988753
Q ss_pred ---------CC--CCcCCccchheehhHHHhhh
Q 047849 380 ---------SP--SKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 380 ---------~~--~~~~~p~~aVA~GAa~~a~~ 401 (651)
++ ..+.+|..++.+|++++|..
T Consensus 332 ~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl 364 (394)
T 1k8k_B 332 GDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADI 364 (394)
T ss_dssp SCCCTTCCCCC----------------------
T ss_pred cccCCCCceEEEEecCCCcceeEEhhhHHhhCC
Confidence 12 22567889999999998874
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.4e-18 Score=173.37 Aligned_cols=213 Identities=18% Similarity=0.157 Sum_probs=120.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCCCCeE-EEEecCCCCHHHHHHHHHHHHHcCCceEEeecchHHHhhhhccccCCCeEEE
Q 047849 167 PSQIGAFVLTKMKETAESYLGKSVSKA-VITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEGLIAV 245 (651)
Q Consensus 167 ~eev~a~~L~~l~~~a~~~~~~~~~~~-VITVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlV 245 (651)
|.++++.+|+.+++.+.... .++ .+++..+ ...++......|+||+|+++++...... ...|
T Consensus 35 ~~e~a~~vl~~~~~~a~~~~----~~~~~~a~t~~------------~~~a~~~~~~~Vne~~aha~a~~~~~~~-~~~v 97 (276)
T 4ehu_A 35 GTTGPSRVLEKLYGKTGLAR----EDIKKVVVTGY------------GRMNYSDADKQISELSCHARGVNFIIPE-TRTI 97 (276)
T ss_dssp TSSHHHHHHHHHHHHHCCCG----GGEEEEEEEST------------TGGGCCSCSEECCHHHHHHHHHHHHSTT-CCEE
T ss_pred CHHHHHHHHHHHHHHCCCcc----hhccccccCch------------HHHHhhCCCcccchHHHHHHHHHHhCCC-CCeE
Confidence 44566777777777664322 222 2222222 1246677789999999999887665433 4578
Q ss_pred EEeCCcceEEEEEEEeccccc---ccCCCCccCHHHHHHHHHHH-----HHhhhhcCCCceeEEEecceeccCCCCeeEE
Q 047849 246 FDLGGGTFDVSILEISNGVFE---DEGIDLSKDRLALQRLREAA-----EKAKIELSSTTQTDINLPFITADASGAKHLN 317 (651)
Q Consensus 246 vD~GggT~Dvsv~~~~~~~~~---~~~~~~~~~~~~~~~L~~~~-----e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~ 317 (651)
+|+|||+++++++.. ++.+. ..+..-...-....++.+.. +..+..+......++ ...........-..
T Consensus 98 l~lgG~~~~~~~~~~-~g~~~~~~~~~~~~~g~G~f~d~~a~~l~~~~~~~~~~~~~a~~~~~i--~~~~~~f~~s~~~~ 174 (276)
T 4ehu_A 98 IDIGGQDAKVLKLDN-NGRLLNFLMNDKCAAGTGRFLDVMAKIIEVDVSELGSISMNSQNEVSI--SSTCTVFAESEVIS 174 (276)
T ss_dssp EEECSSCEEEEEECT-TSCEEEEEEECSCSTTSHHHHHHHHHHHTCCGGGHHHHHTTCSSCCCC--CCCSHHHHHHHHHH
T ss_pred EEEcCCCceEEEEEe-cCceEEEEeCCCcCcchhhHHHHHHHHhccChhhhHHHHhcCCCCCCc--CCccchhhhhHHHH
Confidence 999999999998853 33333 11110011111111111100 001111111111110 00000000000000
Q ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHH
Q 047849 318 ITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAI 397 (651)
Q Consensus 318 ~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~ 397 (651)
..-.....++++..+.+.+.+.+....... ..++.|+|+||.+++|.|++.|++.||.++..+.||++++|+|||+
T Consensus 175 ~~~~~~~~~di~a~~~~~v~~~l~~~~~~~----~~~~~vvl~GGva~n~~lr~~l~~~~g~~~~~p~~p~~~~A~GAAl 250 (276)
T 4ehu_A 175 HLSENAKIEDIVAGIHTSVAKRVSSLVKRI----GVQRNVVMVGGVARNSGIVRAMAREINTEIIVPDIPQLTGALGAAL 250 (276)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHH----CCCSSEEEESGGGGCHHHHHHHHHHHTSCEECCSSGGGHHHHHHHH
T ss_pred hhhccccHHHHHHHHHHHHHHHHHHHHHhc----ccCCeEEEecCccchHHHHHHHHHHHCCCeeeCCCcchHHHHHHHH
Confidence 000111235666666666666555544443 4567999999999999999999999999999999999999999999
Q ss_pred Hhhhcc
Q 047849 398 QGGILR 403 (651)
Q Consensus 398 ~a~~l~ 403 (651)
+|....
T Consensus 251 ~A~~~~ 256 (276)
T 4ehu_A 251 YAFDEA 256 (276)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 997543
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-15 Score=158.54 Aligned_cols=194 Identities=18% Similarity=0.237 Sum_probs=121.3
Q ss_pred eEEEEecCCCCHHHH-HHHHHHHHHcCC------------ceEEeecchHHHhhhhcccc-------CCCeEEEEEeCCc
Q 047849 192 KAVITVPAYFNDAQR-QATKDAGRIAGL------------DVQRIINEPTAASLSYGMNN-------KEGLIAVFDLGGG 251 (651)
Q Consensus 192 ~~VITVPa~f~~~qr-~~l~~Aa~~AGl------------~~~~li~Ep~AAAl~y~~~~-------~~~~vlVvD~Ggg 251 (651)
.+++.+|..+...+| +++++++...+- ..+.+++||.||++++..+. ....++|+|+|||
T Consensus 115 ~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGgg 194 (355)
T 3js6_A 115 VIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSG 194 (355)
T ss_dssp EEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECSS
T ss_pred EEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCCC
Confidence 689999998887777 589998876543 46789999999999987653 2348999999999
Q ss_pred ceEEEEEEEeccccc---ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeE------EEEecH
Q 047849 252 TFDVSILEISNGVFE---DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHL------NITLTR 322 (651)
Q Consensus 252 T~Dvsv~~~~~~~~~---~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~------~~~itr 322 (651)
|+|++++. ++.+. ....+... ......+ ++..+..... ..+....+..... .... .+.+ .
T Consensus 195 Ttd~~v~~--~~~~~~~~s~s~~~G~-~~~~~~i---~~~l~~~~~g---~~l~~~~i~~g~~-~~~~~~~~~k~~di-~ 263 (355)
T 3js6_A 195 TTIIDTYQ--NMKRVEEESFVINKGT-IDFYKRI---ASHVSKKSEG---ASITPRMIEKGLE-YKQCKLNQKTVIDF-K 263 (355)
T ss_dssp CEEEEEEE--TTEECGGGCEEESCCH-HHHHHHH---HHHTC-----------CHHHHHSCCC--------------C-H
T ss_pred cEEEEEEc--CCEEccccccCcchHH-HHHHHHH---HHHHHHhcCC---CcCCHHHHhcCCc-cccccccccccccH-H
Confidence 99999993 33332 11112111 1111111 1122221100 0111111111100 0000 0112 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHh--HHHHHHHHhcCCCCCcCCccchheehhHHHhh
Q 047849 323 SKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPK--VQEVVSEIFGKSPSKGVNPDEAVALGAAIQGG 400 (651)
Q Consensus 323 ~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~--i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~ 400 (651)
+.+++.++++++++.+.|++.+.+ ++.++.|+|+||++.++. |++.|++.|+.. .||.+|+|.|+..++.
T Consensus 264 ~~i~~a~~~~~~~I~~~i~~~l~~----~~~~~~Ivl~GGGa~l~~~~l~~~i~~~~~~~----~~p~~anA~G~~~~~~ 335 (355)
T 3js6_A 264 DEFYKEQDSLIEEVMSNFEITVGN----INSIDRIIVTGGGANIHFDSLSHYYSDVFEKA----DDSQFSNVRGYEKLGE 335 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCC----TTSCSEEEEESTTHHHHHHHHHHHSSSCEECC----SSGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc----hhhccEEEEECcchhcchhhHHHHHHHHCCCC----CCcHHHHHHHHHHHHH
Confidence 235556666666666666666653 466899999999999998 899999988653 8999999999999988
Q ss_pred hccC
Q 047849 401 ILRG 404 (651)
Q Consensus 401 ~l~~ 404 (651)
.+..
T Consensus 336 ~~~~ 339 (355)
T 3js6_A 336 LLKN 339 (355)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A | Back alignment and structure |
|---|
Probab=99.58 E-value=7.3e-15 Score=128.62 Aligned_cols=102 Identities=16% Similarity=0.271 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--cccCCCHHHHHHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHHHH
Q 047849 548 ERKALIDIRNQADTTIYSIEKSLGE--YREKIPSEVAKEIEDAVADLRKAMGADN---VDDIKSKLDAANKAVSKIGQHM 622 (651)
Q Consensus 548 ~~~~~~~~~n~le~~i~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~~~wl~~~~---~~~~~~k~~~l~~~~~~i~~~~ 622 (651)
++++++++||+||+|||.+++.|.+ +.++++++++++|...|+++++||++++ .++|+.++++|+..+.+|++++
T Consensus 3 ~~re~ieakN~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~wL~~~~~a~~e~i~~k~~eL~~~~~~i~~k~ 82 (113)
T 3lof_A 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGL 82 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999976 8899999999999999999999998864 8999999999999999999999
Q ss_pred hcCCC---CCCCCCCCCCCCCCCchhhhhc
Q 047849 623 AGGSG---GGAASGGSQGGEQTPEAEYEEV 649 (651)
Q Consensus 623 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 649 (651)
|+++| ||+++|+.++++...+|++|||
T Consensus 83 y~~~~~~~~~~~~~~~~~~~~~~gp~~eev 112 (113)
T 3lof_A 83 YQGAGGPGPGGFGAQGPKGGSGSGPTIEEV 112 (113)
T ss_dssp HHC---------------------------
T ss_pred HHhccCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 98754 2222333333344678999998
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.2e-14 Score=124.40 Aligned_cols=101 Identities=13% Similarity=0.207 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--cccCCCHHHHHHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHHHHHHHHHHh
Q 047849 549 RKALIDIRNQADTTIYSIEKSLGE--YREKIPSEVAKEIEDAVADLRKAMGAD---NVDDIKSKLDAANKAVSKIGQHMA 623 (651)
Q Consensus 549 ~~~~~~~~n~le~~i~~~~~~l~~--~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~k~~~l~~~~~~i~~~~~ 623 (651)
+|++.++||++|+|||.+++.|.+ +.+.++++++++|...|+++++||+++ +.++|+.++++|++.+.+|..++|
T Consensus 13 ~re~iEarN~aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~~~i~~k~y 92 (120)
T 2p32_A 13 GLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLY 92 (120)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999986 888999999999999999999999865 689999999999999999999999
Q ss_pred cCCC--CCCCCCCCCCCCCCCchhhhhcc
Q 047849 624 GGSG--GGAASGGSQGGEQTPEAEYEEVK 650 (651)
Q Consensus 624 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 650 (651)
+++| |++ +|+.++++++++|++|||.
T Consensus 93 ~~~~~~~~~-~~~~~~~~~~~~~~~ee~d 120 (120)
T 2p32_A 93 QSAGGAPPG-AAPGGAAGGAGGPTIEEVD 120 (120)
T ss_dssp CC---------------------------
T ss_pred HhccCCCCC-CCCCCCCCCCCCCCCCCCC
Confidence 7554 332 2222334556789999983
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-14 Score=150.32 Aligned_cols=196 Identities=12% Similarity=0.093 Sum_probs=118.6
Q ss_pred CeEEEEecCCCCH--HHHHHHHHHHHHc--------C------CceEEeecchHHHhhhhccccCCCeEEEEEeCCcceE
Q 047849 191 SKAVITVPAYFND--AQRQATKDAGRIA--------G------LDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFD 254 (651)
Q Consensus 191 ~~~VITVPa~f~~--~qr~~l~~Aa~~A--------G------l~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~D 254 (651)
..+++++|..+.. .+|+.+++....- | +..+.+++||.+|.+.+....++..++|+|+||||+|
T Consensus 106 v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~~~~~~~~v~vvDiGggTtd 185 (329)
T 4apw_A 106 VQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQENFKNKNVAVIDFGGLNMG 185 (329)
T ss_dssp EEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSCCCCTTCEEEEEEECSSCEE
T ss_pred EEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcchhhccCCEEEEEeCCCcEE
Confidence 3789999976653 4677777776521 2 2347789999998876632233349999999999999
Q ss_pred EEEEEEecccccc-cCCCCccCHHHHHHHHHH-HHHhhh-hcCCCceeEEEecceeccCCCC----eeEEEEecHHHHHH
Q 047849 255 VSILEISNGVFED-EGIDLSKDRLALQRLREA-AEKAKI-ELSSTTQTDINLPFITADASGA----KHLNITLTRSKFET 327 (651)
Q Consensus 255 vsv~~~~~~~~~~-~~~~~~~~~~~~~~L~~~-~e~~K~-~Ls~~~~~~i~i~~~~~~~~g~----~~~~~~itr~~fe~ 327 (651)
++++.-..-.... ....+. ...+.+. ++..+. ..+..-. .-.++.+... |. .+. ..++.+.+++
T Consensus 186 ~~v~~~g~~~~~~~~~~~~G-----~~~~~~~i~~~l~~~~~g~~i~-~~~~e~i~~~--g~~~~g~~~-~~~~~~~i~~ 256 (329)
T 4apw_A 186 FSLYRNCVVNPSERFIEEHG-----VKDLIIRVGDALTDLNNGNLIT-NEQAESALNN--GYMKKGGEI-DTESSTVIKK 256 (329)
T ss_dssp EEEEETTEECGGGCEEESCC-----HHHHHHHHHTSSSSCSSCSCTT-SBTTTTCSSS--CSSCEECTT-CCSTTHHHHH
T ss_pred EEEEECCEEeeccccchhhH-----HHHHHHHHHHHHHhhccCCCCC-HHHHHHHHhc--CCcccCCcc-hhHHHHHHHH
Confidence 9999832211110 111111 1111111 112222 1111000 0011111110 00 111 1244566666
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 328 LVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 328 l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
.++++++++.+.+++. +.+++.++.|+|+||++.+ +.+.|++.|+.++....||.+|+|+|+..++..
T Consensus 257 ~~~e~~~~I~~~i~~~----~~~~~~~~~IvltGGGA~l--~~~~l~~~~~~~v~v~~~P~~a~a~G~~~~~~~ 324 (329)
T 4apw_A 257 VKEKFLKDAIKLIEKR----GFKLDQLDSLIFIGGTTQK--LKEQISKTYPNNSIITNNSQWTTCEGLYKVAVA 324 (329)
T ss_dssp HHHHHHHHHHHHHHHH----TCCTTSCSEEEEESTTHHH--HHHHHHHHSTTCEECCSSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc----CCCHHHccEEEEECChHHH--HHHHHHHHcCCCCEecCCChhhHHHHHHHHHhh
Confidence 7777777666666555 3455668999999999998 679999999977778899999999999988764
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-13 Score=118.08 Aligned_cols=99 Identities=15% Similarity=0.278 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hcccCCCHHHHHHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 047849 552 LIDIRNQADTTIYSIEKSLG--EYREKIPSEVAKEIEDAVADLRKAMGAD---NVDDIKSKLDAANKAVSKIGQHMAGGS 626 (651)
Q Consensus 552 ~~~~~n~le~~i~~~~~~l~--~~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~k~~~l~~~~~~i~~~~~~~~ 626 (651)
+.++||++|+|||.+++.|. ++.+.+++++|++|...|+++++||+++ +.++|+.++++|++.+.+|..++|+++
T Consensus 2 l~EarN~aE~~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~~L~~~~~ad~~~i~~~~~~L~~~~~~i~~~~~~~~ 81 (113)
T 1ud0_A 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSA 81 (113)
T ss_dssp --CCHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56789999999999999997 6888999999999999999999999854 578999999999999999999999654
Q ss_pred C--CCCCCCC------CCCCCCCCchhhhhcc
Q 047849 627 G--GGAASGG------SQGGEQTPEAEYEEVK 650 (651)
Q Consensus 627 ~--~~~~~~~------~~~~~~~~~~~~~~~~ 650 (651)
+ |++++|+ .++++.+++|++|||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~d 113 (113)
T 1ud0_A 82 GGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 113 (113)
T ss_dssp CCCCCC--------------------------
T ss_pred cCCCCCCCCCCCCcccCCCCCCCCCCCcccCC
Confidence 3 4443333 2233345788999983
|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.5e-11 Score=129.72 Aligned_cols=151 Identities=16% Similarity=0.134 Sum_probs=101.5
Q ss_pred CcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeC---CcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCC
Q 047849 57 NDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQK---GELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFD 133 (651)
Q Consensus 57 ~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~---~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~ 133 (651)
...|+||+||.++++++...+.|.++ +||+|+...+ ...+||+.+.... +.+ ..+
T Consensus 23 ~~~iVID~GS~~~kaG~ag~~~P~~v--------~PSvVg~~~~~~~~~~~vG~e~~~~~---r~~--l~l--------- 80 (498)
T 3qb0_A 23 VSAVVIDPGSYTTNIGYSGSDFPQSI--------LPSVYGKYTADEGNKKIFSEQSIGIP---RKD--YEL--------- 80 (498)
T ss_dssp BSCEEEECCSSEEEEEETTCSSCSEE--------EESEEEEESSCSSCCEECCTTGGGSC---CTT--EEE---------
T ss_pred CCeEEEECCCcEEEEEECCCCCeeee--------cCceeEEeccCCCccEEEecHHHhcC---cCc--eEE---------
Confidence 34689999999999998776666654 4999998543 2467887532210 000 000
Q ss_pred ChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCC--CCC-eEEEEecCCCCHHHHHHHH
Q 047849 134 DPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGK--SVS-KAVITVPAYFNDAQRQATK 210 (651)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~--~~~-~~VITVPa~f~~~qr~~l~ 210 (651)
..|+ .+|.... =+.+..+++|+.. +.++. .-. .+++|.|.......|+.+.
T Consensus 81 ---------~~Pi-------------~~GvI~d-wd~~E~iw~~~f~---~~L~v~p~~~~pvlltep~~n~~~~Re~~~ 134 (498)
T 3qb0_A 81 ---------KPII-------------ENGLVID-WDTAQEQWQWALQ---NELYLNSNSGIPALLTEPVWNSTENRKKSL 134 (498)
T ss_dssp ---------EESE-------------ETTEESC-HHHHHHHHHHHHH---HTSCCSCCTTCCEEEEECTTCCHHHHHHHH
T ss_pred ---------eccC-------------cCCEEcc-HHHHHHHHHHHHH---hhhCCCcccCCceEEEeCCCCcHHHHHHHH
Confidence 0111 1122212 2333445555442 22332 223 6999999999999999998
Q ss_pred HHH-HHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEE
Q 047849 211 DAG-RIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 211 ~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~ 259 (651)
+.+ +.+|++.+.++.+|.+|+++++.. +-||+|+|+|+++++.+.
T Consensus 135 eilFE~f~vpav~l~~~~vlalya~G~~----tglVVDiG~g~T~vvPI~ 180 (498)
T 3qb0_A 135 EVLLEGMQFEACYLAPTSTCVSFAAGRP----NCLVVDIGHDTCSVSPIV 180 (498)
T ss_dssp HHHHTTSCCSEEEEEEHHHHHHHHHTCS----SEEEEEECSSCEEEEEEE
T ss_pred HHHHhhcCCCeEeecchHHHHHHHcCCC----eEEEEEcCCCcEEEEEEe
Confidence 875 779999999999999999888763 359999999999999885
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.22 E-value=8.7e-11 Score=126.67 Aligned_cols=210 Identities=15% Similarity=0.096 Sum_probs=129.9
Q ss_pred CeEEEEecCCCCHHHHHHHHHHH-HHcCCceEEeecchHHHhhhhccccC----CCeEEEEEeCCcceEEEEEEEecccc
Q 047849 191 SKAVITVPAYFNDAQRQATKDAG-RIAGLDVQRIINEPTAASLSYGMNNK----EGLIAVFDLGGGTFDVSILEISNGVF 265 (651)
Q Consensus 191 ~~~VITVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~----~~~vlVvD~GggT~Dvsv~~~~~~~~ 265 (651)
..+++|.|...+...|+.+.+.+ +..|++.+.++.+|.+|+++.+.... ..+-||+|+|+|+|+++.+. .+...
T Consensus 124 ~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~-~G~~l 202 (427)
T 3dwl_A 124 HYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVA-EGYVI 202 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEE-TTEEC
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCcccccCCCceEEEEECCCCceEEEEEE-CCEEe
Confidence 47999999999999999998887 78999999999999999998875321 12679999999999999984 22222
Q ss_pred cc--cCCCCccCH--HHHH----------HHHHHHHHhhhhcCCCcee-----------EEEecceeccCCCCeeEEEEe
Q 047849 266 ED--EGIDLSKDR--LALQ----------RLREAAEKAKIELSSTTQT-----------DINLPFITADASGAKHLNITL 320 (651)
Q Consensus 266 ~~--~~~~~~~~~--~~~~----------~L~~~~e~~K~~Ls~~~~~-----------~i~i~~~~~~~~g~~~~~~~i 320 (651)
.. ..+++..+. ..+. .-...+|.+|+.+...... ...+....-....+....+.+
T Consensus 203 ~~~~~rl~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~IKe~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~i 282 (427)
T 3dwl_A 203 GSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDV 282 (427)
T ss_dssp GGGCEEESCCHHHHHHHHHHTTC--------CHHHHHHHHHHCCCCSCHHHHHHHTTC-----CCBCC---------CBC
T ss_pred hhhheeccccHHHHHHHHHHHHHHcCCCchhHHHHHHHHHhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEE
Confidence 10 011111110 0011 1124578888887643210 000000000000112235667
Q ss_pred cHHHH---HHHHHHH------HHHHHHHHHHHHHHcCCC--CCCCCeEEEecCccCcHhHHHHHHHHhc-----------
Q 047849 321 TRSKF---ETLVNNL------IERTRAPCKNCLKDANIT--TKDVDEVLLVGGMTRVPKVQEVVSEIFG----------- 378 (651)
Q Consensus 321 tr~~f---e~l~~~~------~~~i~~~i~~~l~~a~~~--~~~i~~VvLvGGss~ip~i~~~l~~~f~----------- 378 (651)
..+.| |-+++|- ...+.++|.+.|.++..+ +.-...|+|+||+|.+|.+.+.|.+.+.
T Consensus 283 g~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~ 362 (427)
T 3dwl_A 283 GFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSE 362 (427)
T ss_dssp CTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSCHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-----
T ss_pred ChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCCHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccc
Confidence 77765 3455551 234777777887765321 1123569999999999999999987652
Q ss_pred -----------CCCCCcCCccchheehhHHHhhh
Q 047849 379 -----------KSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 379 -----------~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
.++..+.++..++=+|++++|..
T Consensus 363 ~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilasl 396 (427)
T 3dwl_A 363 MLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQT 396 (427)
T ss_dssp --------CCCCCEECCTTCTTHHHHHHHHHHHS
T ss_pred cccccCCCceeEEEecCCccccceecCceeeccc
Confidence 11223456778999999999874
|
| >2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-11 Score=132.37 Aligned_cols=191 Identities=20% Similarity=0.218 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHc-CC--ceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccC
Q 047849 204 AQRQATKDAGRIA-GL--DVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKD 275 (651)
Q Consensus 204 ~qr~~l~~Aa~~A-Gl--~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~ 275 (651)
.+-+.+.+|.+.+ || ++-. .||.||+++...+...+ .++++||||||||++++.-+.-.+. -.|..++.+
T Consensus 368 ~~m~NI~~cVer~~gL~veV~g--~ep~AAglaaLTeDE~eLGvaiIDmGGGTTd~sVf~~G~lv~a~~ip~gG~~VT~D 445 (610)
T 2d0o_A 368 LQMAMIAREIEQKLNIDVQIGG--AEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDIIATHLAGAGDMVTMI 445 (610)
T ss_dssp CCHHHHHHHHHHHHCCEEEEEE--EHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECTTCCEEEEEEECSHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEEEEEeccchHHHHHH
Confidence 3478899999999 99 6666 99999999988876666 9999999999999999974433332 222222222
Q ss_pred -HHHHHHH-HHHHHHhhhhcCCCce----------eEEEe--cceeccCCCCe------eEEEEecHHH--HHHHHHHHH
Q 047849 276 -RLALQRL-REAAEKAKIELSSTTQ----------TDINL--PFITADASGAK------HLNITLTRSK--FETLVNNLI 333 (651)
Q Consensus 276 -~~~~~~L-~~~~e~~K~~Ls~~~~----------~~i~i--~~~~~~~~g~~------~~~~~itr~~--fe~l~~~~~ 333 (651)
.+.+..- +..||+.|. ...... ..+.+ +.+....- .. ..-..| +.. +|+ ++-+-
T Consensus 446 IA~~Lgt~d~~~AErIK~-YG~A~ve~lf~~~dede~Iev~~~~lgp~~~-~Rv~~~~~~~L~~I-~pR~~vEE-lelVR 521 (610)
T 2d0o_A 446 IARELGLEDRYLAEEIKK-YPLAKVESLFHLRHEDGSVQFFSTPLPPAVF-ARVCVVKADELVPL-PGDLALEK-VRAIR 521 (610)
T ss_dssp HHHHHTCCCHHHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCGGGT-TCEEEECSSCEEEC-CTTCCHHH-HHHHH
T ss_pred HHHHhCCCCHHHHHHhcc-cCceeecccccccCCCCeEEEecCCCCccee-eeeecccccceeee-CCCcchHH-HHHHH
Confidence 1222333 678999999 653211 12333 22211100 01 112344 555 666 55555
Q ss_pred HHHHHH--HHHHHHHcCC-----CCCCCCeEEEecCccCcHhHHHHHHHHhcC-CCC-------CcCCccchheehhHHH
Q 047849 334 ERTRAP--CKNCLKDANI-----TTKDVDEVLLVGGMTRVPKVQEVVSEIFGK-SPS-------KGVNPDEAVALGAAIQ 398 (651)
Q Consensus 334 ~~i~~~--i~~~l~~a~~-----~~~~i~~VvLvGGss~ip~i~~~l~~~f~~-~~~-------~~~~p~~aVA~GAa~~ 398 (651)
+++.+. +...|+..+. +..+|..|+|+||+|.++.+.++.++.|+. .+. ..-+|..|+|.|.++|
T Consensus 522 ~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~GI~ElA~~iL~~y~VRiGrP~~~gv~gP~fAtAvGLlly 601 (610)
T 2d0o_A 522 RSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILS 601 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHhcCCccCCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeEEecCCccccCCCcHHHHHHHHHH
Confidence 554443 2333555432 345679999999999999999999999987 432 2358999999999987
Q ss_pred hh
Q 047849 399 GG 400 (651)
Q Consensus 399 a~ 400 (651)
.+
T Consensus 602 ~~ 603 (610)
T 2d0o_A 602 WH 603 (610)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-11 Score=131.28 Aligned_cols=188 Identities=19% Similarity=0.216 Sum_probs=123.6
Q ss_pred HHHHHHHHHHc-CC--ceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccC-H
Q 047849 206 RQATKDAGRIA-GL--DVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKD-R 276 (651)
Q Consensus 206 r~~l~~Aa~~A-Gl--~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~-~ 276 (651)
-+.+.+|.+.+ || ++-. .||.||+++...+...+ .++++||||||||++++.-+.-.+. -.|..++.+ .
T Consensus 372 m~NI~~~Ver~~gL~veV~g--~ep~AA~laaLTedE~elGvaiIDmGgGTTd~sVf~~g~lv~a~~ip~gG~~VT~DIA 449 (607)
T 1nbw_A 372 MQVIARELSARLQTEVVVGG--VEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQITAVHLAGAGNMVSLLIK 449 (607)
T ss_dssp SCCHHHHHHHHHTSEEEECS--CHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECSSSCEEEEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEEEEEeccchHHHHHHHH
Confidence 56788899999 99 5555 99999999988876666 9999999999999999974443332 222222222 1
Q ss_pred HHHHHH-HHHHHHhhhhcCCCce----------eEEEe--cceeccCCCCe------eEEEEecHHH--HHHHHHHHHHH
Q 047849 277 LALQRL-REAAEKAKIELSSTTQ----------TDINL--PFITADASGAK------HLNITLTRSK--FETLVNNLIER 335 (651)
Q Consensus 277 ~~~~~L-~~~~e~~K~~Ls~~~~----------~~i~i--~~~~~~~~g~~------~~~~~itr~~--fe~l~~~~~~~ 335 (651)
+.+..- +..||+.|. ...... ..+.+ +.+....- .. ..-..| +.. +|+ ++-+-++
T Consensus 450 ~~Lg~~d~~~AErIK~-YG~A~~e~lf~~~dede~Iev~~~~lgp~~~-~R~~~~~~~~L~~I-~~R~~vEE-lelVR~~ 525 (607)
T 1nbw_A 450 TELGLEDLSLAEAIKK-YPLAKVESLFSIRHENGAVEFFREALSPAVF-AKVVYIKEGELVPI-DNASPLEK-IRLVRRQ 525 (607)
T ss_dssp HHHTCSCHHHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCGGGT-TCEEEEETTEEEEE-CCSSCHHH-HHHHHHH
T ss_pred HHhCCCCHHHHHHhcc-cCceeecccccccCCCCeEEEecCCCCccee-eeeecccccceeee-CCCcchHH-HHHHHHH
Confidence 223333 678999999 643211 12333 22211100 01 112344 555 666 5555555
Q ss_pred HHHH--HHHHHHHcCCC-----CCCCCeEEEecCccCcHhHHHHHHHHhcC-CCC-------CcCCccchheehhHHHh
Q 047849 336 TRAP--CKNCLKDANIT-----TKDVDEVLLVGGMTRVPKVQEVVSEIFGK-SPS-------KGVNPDEAVALGAAIQG 399 (651)
Q Consensus 336 i~~~--i~~~l~~a~~~-----~~~i~~VvLvGGss~ip~i~~~l~~~f~~-~~~-------~~~~p~~aVA~GAa~~a 399 (651)
+.+. +...|+..+.. ..+|..|+|+||+|.++.+.++.++.|+. .+. ..-.|..|+|.|.++|.
T Consensus 526 ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA~~iL~~~~VRiGrP~~~g~~gP~fAtAvGLlly~ 604 (607)
T 1nbw_A 526 AKEKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLAG 604 (607)
T ss_dssp HHHHHHHHHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHHH
T ss_pred HhhhhhhHHHHHhcCCcccCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeEEecCCccccCCchHHHHHHHHHhh
Confidence 4443 34558776652 35679999999999999999999999976 432 23589999999999864
|
| >4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=7.5e-08 Score=108.78 Aligned_cols=81 Identities=16% Similarity=0.281 Sum_probs=64.6
Q ss_pred HHHHHHHHH-HhhCCCCC-----eEEEEecCCCCHHHHHHHHHH-HHHcCCceEEeecchHHHhhhhccccCCCeEEEEE
Q 047849 175 LTKMKETAE-SYLGKSVS-----KAVITVPAYFNDAQRQATKDA-GRIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFD 247 (651)
Q Consensus 175 L~~l~~~a~-~~~~~~~~-----~~VITVPa~f~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD 247 (651)
+..|.+++- +.++.... .+++|.|..++...|+.|.+. .+..|++.+.++.++.+|+++++.. +-+|||
T Consensus 177 ~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~----tglVVD 252 (593)
T 4fo0_A 177 IEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLS----STCIVD 252 (593)
T ss_dssp HHHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCS----EEEEEE
T ss_pred HHHHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCC----ceEEEE
Confidence 345555554 45665433 499999999999998888765 4567999999999999999988754 569999
Q ss_pred eCCcceEEEEEE
Q 047849 248 LGGGTFDVSILE 259 (651)
Q Consensus 248 ~GggT~Dvsv~~ 259 (651)
+|.+.|+|+-|.
T Consensus 253 iG~~~T~v~PV~ 264 (593)
T 4fo0_A 253 VGDQKTSVCCVE 264 (593)
T ss_dssp ECSSCEEEEEEE
T ss_pred eCCCceeeeeeE
Confidence 999999999775
|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
Probab=98.57 E-value=3.8e-07 Score=92.23 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhc
Q 047849 326 ETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGIL 402 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l 402 (651)
++++..+++.+...+.+.++..+. .+.|+++||.++.|.+++.+.+.++.++..+.+|..+.|+|||++|...
T Consensus 185 ~di~~av~e~Va~~i~~~~~~~~~----~~~i~~~GG~a~n~~~~~~~~~~lg~~v~~p~~~~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 185 IDIIAGIHRSVASRVIGLANRVGI----VKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYKK 257 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC----CSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC----CCeEEEeCccccCHHHHHHHHHHHCCCeEeCCCcchHhHHHHHHHHHHh
Confidence 445555555555555555544321 3689999999999999999999999988888888889999999998753
|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
Probab=98.01 E-value=6.9e-05 Score=75.66 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=41.1
Q ss_pred CCCeEEEecC-ccCcHhHHHHHHHHh---cCCCCCcCCccchheehhHHHh
Q 047849 353 DVDEVLLVGG-MTRVPKVQEVVSEIF---GKSPSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 353 ~i~~VvLvGG-ss~ip~i~~~l~~~f---~~~~~~~~~p~~aVA~GAa~~a 399 (651)
.++.|+++|| .+..|.+++.+++.+ +.++..+.+|..+.|+|||+++
T Consensus 236 ~i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlGAaL~~ 286 (287)
T 2ews_A 236 KTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 286 (287)
T ss_dssp TCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred CCCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHHHHHhC
Confidence 3557999999 899999999999985 5667788999999999999974
|
| >3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.018 Score=59.09 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=29.5
Q ss_pred cCCceEEeecchHHHhhhhcc---ccCCCeEEEEEeCCcceEEEEEE
Q 047849 216 AGLDVQRIINEPTAASLSYGM---NNKEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 216 AGl~~~~li~Ep~AAAl~y~~---~~~~~~vlVvD~GggT~Dvsv~~ 259 (651)
.|++ +.+.|+..|+|++... .+..++++++-+|.| +-..++.
T Consensus 96 ~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii~ 140 (321)
T 3vgl_A 96 VGLP-VVVENDANAAAWGEYRFGAGQGHDDVICITLGTG-LGGGIII 140 (321)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEE
T ss_pred hCCC-EEEEehhhhHHHHHHHhCCCCCCCCEEEEEeCcc-eEEEEEE
Confidence 4776 5899999999987432 223348888899988 5555553
|
| >4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0049 Score=68.19 Aligned_cols=66 Identities=17% Similarity=0.269 Sum_probs=58.0
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHH-HcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEE
Q 047849 191 SKAVITVPAYFNDAQRQATKDAGR-IAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 191 ~~~VITVPa~f~~~qr~~l~~Aa~-~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~ 259 (651)
..+++|.|..++...|+.|.+.+- ..|++.+.++.+|.+|+++++. ..+-||+|+|+|+|+++.+.
T Consensus 222 ~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl---~ttGLVVDiG~g~T~VvPV~ 288 (655)
T 4am6_A 222 YKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGI---STSTCVVNIGAAETRIACVD 288 (655)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCC---SSCEEEEEECSSCEEEEEEE
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCC---CCceEEEcCCCceEEEEEEe
Confidence 469999999999999999988874 6899999999999999998874 12569999999999999884
|
| >3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.11 Score=52.76 Aligned_cols=41 Identities=17% Similarity=0.153 Sum_probs=27.7
Q ss_pred cCCceEEeecchHHHhhhhccc---cCCCeEEEEEeCCcceEEEEE
Q 047849 216 AGLDVQRIINEPTAASLSYGMN---NKEGLIAVFDLGGGTFDVSIL 258 (651)
Q Consensus 216 AGl~~~~li~Ep~AAAl~y~~~---~~~~~vlVvD~GggT~Dvsv~ 258 (651)
.|++ +.+.|+-.|||++-... +..++++++-+|.| +-..++
T Consensus 98 ~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii 141 (302)
T 3vov_A 98 TGRP-VFLENDANAAALAEHHLGAAQGEESSLYLTVSTG-IGGGVV 141 (302)
T ss_dssp HSSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEE
T ss_pred hCCC-EEEEechHHHHHHHHHhCCCCCCCCEEEEEECCc-eeEEEE
Confidence 4776 47999999999864332 22347888888877 444444
|
| >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0073 Score=62.57 Aligned_cols=70 Identities=13% Similarity=0.058 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHcCCCCCCCCeEEEecC-ccCcHhHHHHHHHHhc------CCCCCcCCccchheeh
Q 047849 326 ETLVNNLIERTRAPCKNCL----KDANITTKDVDEVLLVGG-MTRVPKVQEVVSEIFG------KSPSKGVNPDEAVALG 394 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l----~~a~~~~~~i~~VvLvGG-ss~ip~i~~~l~~~f~------~~~~~~~~p~~aVA~G 394 (651)
++++..++..+..-|-... +.. .++.|+++|| .+..|.+++.|++.++ .++..+.+|..+-|+|
T Consensus 279 eDIa~gll~sVa~~I~~lA~l~A~~~-----~i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~GAlG 353 (360)
T 2i7n_A 279 EDLARATLVTITNNIGSIARMCALNE-----NIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVG 353 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----TCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHHHHH
Confidence 5556666555555544432 332 3447999999 8999999999999974 4667788999999999
Q ss_pred hHHHhh
Q 047849 395 AAIQGG 400 (651)
Q Consensus 395 Aa~~a~ 400 (651)
||+.+.
T Consensus 354 AaL~~~ 359 (360)
T 2i7n_A 354 ALLELF 359 (360)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999753
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0059 Score=66.72 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhcc
Q 047849 326 ETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILR 403 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~ 403 (651)
.++++.+++.+.-.++..++...-....++.|.++||.++.+.+.+++.+.||.++..+..++.+.|+|||+.|+.-.
T Consensus 359 ~~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~~alGAA~lA~~~~ 436 (484)
T 2itm_A 359 NELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAA 436 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCCCSCEEEESGGGCCHHHHHHHHHHHCCCEEEESCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEeccccCHHHHHHHHHHhCCeEEeCCCCCcccHHHHHHHHHHHc
Confidence 344555555554444444443321223567899999999999999999999999887766666568999999988643
|
| >3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.26 Score=50.31 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=29.4
Q ss_pred Hc-CCceEEeecchHHHhhhhcc---ccCCCeEEEEEeCCcceEEEEEE
Q 047849 215 IA-GLDVQRIINEPTAASLSYGM---NNKEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 215 ~A-Gl~~~~li~Ep~AAAl~y~~---~~~~~~vlVvD~GggT~Dvsv~~ 259 (651)
.. |++ +.+.|+..|||++-.. .+..++++++-+|.| .-..++.
T Consensus 116 ~~~~~p-V~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~gii~ 162 (321)
T 3r8e_A 116 EFPHIH-FKIENDAKCAALGEYYFGENKRMQTFILLALGTG-VGSGVMM 162 (321)
T ss_dssp HCTTSE-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEE
T ss_pred HcCCCC-EEEEchHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEE
Confidence 45 776 4799999999987432 222347888899988 5555553
|
| >2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.2 Score=51.06 Aligned_cols=48 Identities=23% Similarity=0.181 Sum_probs=32.5
Q ss_pred CCeEEEecCccC-cHhHHHHHHHHhcCC----------CCCcCCccchheehhHHHhhh
Q 047849 354 VDEVLLVGGMTR-VPKVQEVVSEIFGKS----------PSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 354 i~~VvLvGGss~-ip~i~~~l~~~f~~~----------~~~~~~p~~aVA~GAa~~a~~ 401 (651)
++.|+|.||.+. .|.+.+.+++.+... +......+.+.++|||.++..
T Consensus 263 p~~IvlgGg~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~l~~~ 321 (326)
T 2qm1_A 263 PDSVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKLAELGNEAGVIGAASLALQ 321 (326)
T ss_dssp CSEEEEEESGGGGTHHHHHHHHHHHHHTSCHHHHTTSEEEECSSGGGHHHHHHHHHGGG
T ss_pred CCEEEEcChhhhchHHHHHHHHHHHHHhhhhccCCCcEEEEcCcCchHHHHHHHHHHHH
Confidence 458999999886 577777777766321 111224556889999988754
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.008 Score=66.81 Aligned_cols=85 Identities=19% Similarity=0.232 Sum_probs=60.7
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHH
Q 047849 319 TLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 398 (651)
Q Consensus 319 ~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~ 398 (651)
.-+|.++-.+++.+++.+.-.++..++...-....++.|.++||.++.+.+.+++.+.||.++..+ ...++.|+|||+.
T Consensus 408 ~~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g~~~~~i~~~GG~aks~~~~Qi~ADv~g~pV~~~-~~~e~~alGAA~l 486 (554)
T 3l0q_A 408 STTPEDMALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHANATGCAMLLP-EESEAMLLGSAMM 486 (554)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEEEESGGGGCHHHHHHHHHHHCCEEEEE-SCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCccccCHHHHHHHHHhhCCeEEec-CCCcchHHHHHHH
Confidence 346777754455555555554444444322123457899999999999999999999999887654 4567999999999
Q ss_pred hhhccC
Q 047849 399 GGILRG 404 (651)
Q Consensus 399 a~~l~~ 404 (651)
|+.-.+
T Consensus 487 A~~a~G 492 (554)
T 3l0q_A 487 GTVAAG 492 (554)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 986443
|
| >4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.22 Score=50.26 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=35.3
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcCCC------CCcCCccchheehhHHHhhh
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGKSP------SKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~~~------~~~~~p~~aVA~GAa~~a~~ 401 (651)
+++.|+|-||.+..+.+.+.|++.+.... ....-.+.+.++||+.++..
T Consensus 237 ~p~~IvlgGgi~~~~~~~~~l~~~l~~~~~~~~~i~~s~lg~~a~~~GAa~l~~~ 291 (297)
T 4htl_A 237 DPTHIFIGGGITSRPTFIAELKHHMESFGLRDTIIETATHKNQAGLLGAVYHFLQ 291 (297)
T ss_dssp CCSEEEEESGGGGSTTHHHHHHHHHTTTCCTTCEEEECSCTTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCcccccHHHHHHHHHHHHHhccCCCeEEECCcCChHHHHhHHHHHHH
Confidence 45689999999988888888888774321 12234567889999987653
|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0091 Score=65.42 Aligned_cols=77 Identities=19% Similarity=0.269 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 326 ETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.++++.+++.+.-.++..++...-.. .++.|.++||.++.+.+.+++.+.||.++..+ .+.++.|+|||+.|+.-.+
T Consensus 367 ~~l~rAvlEgia~~~~~~l~~l~~~~-~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~-~~~e~~alGaA~lA~~~~g 443 (497)
T 2zf5_O 367 EHLARATLEAIAYLTRDVVDEMEKLV-QIKELRVDGGATANDFLMQFQADILNRKVIRP-VVKETTALGAAYLAGLAVD 443 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTS-CCCCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CcceEEEeCccccCHHHHHHHHhhcCCeEEEc-CCCcchHHHHHHHHHHHhC
Confidence 45556666666666666666544333 67899999999999999999999999887654 4456899999999986443
|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.01 Score=65.60 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 325 FETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 325 fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
-..+++.+++.+.-.++..++..+.....++.|.++||+++.+.+.+++.+.||.++..+ .+.++.|+|||+.|+.
T Consensus 406 ~~~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~alGaA~lA~~ 481 (538)
T 4bc3_A 406 GDVEVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDAPVYVI-DTANSACVGSAYRAFH 481 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHHHHHTSCEEEC-CCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHHHHhCCceEec-CCCCchHHHHHHHHHH
Confidence 356677777777666677777665555567899999999999999999999999987654 4577999999999885
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.01 Score=65.07 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 326 ETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.++++.+++.+.-.++..++...-....++.|.++||.++.+.+.+++.+.||.++... .+.++.|+|||+.|+.-.+
T Consensus 366 ~~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~alGaA~lA~~a~G 443 (504)
T 3ll3_A 366 PEMARAVIEGIIFNLYDAASNLIKNTKKPVAINATGGFLKSDFVRQLCANIFNVPIVTM-KEQQSGTLAAMFLARQALG 443 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCCSEEEEESGGGCSHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCchhcCHHHHHHHHHhhCCeEEec-CCCCchhHHHHHHHHHHcC
Confidence 34455555555444444444321112357899999999999999999999999987653 4567999999999986444
|
| >2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=1.4 Score=44.18 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=36.1
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcC-CCCCcCCccchheehhHHHhhh
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGK-SPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~-~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
+++.|+|.||.+..+.+.+.+++.+.. ++..+. .+.+.+.||+.++..
T Consensus 239 ~p~~IvlgGgv~~~~~~~~~l~~~~~~~~i~~~~-~~~~~~~GAa~la~~ 287 (299)
T 2e2o_A 239 GTNKVYLKGGMFRSNIYHKFFTLYLEKEGIISDL-GKRSPEIGAVILAYK 287 (299)
T ss_dssp TCSEEEEESGGGGSHHHHHHHHHHHHHTTCEEEC-CSCCHHHHHHHHHHH
T ss_pred CCCEEEEECCccCcHHHHHHHHHHCCCCeEeccC-CCCChHHHHHHHHHH
Confidence 456899999988778888888888753 444444 567889999987753
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0092 Score=65.60 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCC-CCcCCccchheehhHHHhhhccC
Q 047849 326 ETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSP-SKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~-~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.++++.+++.+.-.++..++...- .. ++.|.++||+++.+.+.+++.+.||.++ .. ..+.++.|+|||+.|+.-.+
T Consensus 377 ~~l~RAvlEgia~~~~~~~~~l~~-g~-~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~~e~~alGaA~lA~~a~G 453 (511)
T 3hz6_A 377 AQILLAVLEGAALSLRWCAELLGM-EK-VGLLKVVGGGARSEAWLRMIADNLNVSLLVK-PDAHLHPLRGLAALAAVELE 453 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTG-GG-CCEEEEESGGGGCHHHHHHHHHHHTCEEEEC-CCGGGHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CC-CCEEEEeCchhcCHHHHHHHHHHHCCeeEEe-cCCCCchHHHHHHHHHHHhC
Confidence 344555666555555555554332 34 7899999999999999999999999987 54 45888999999999986544
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.01 Score=65.27 Aligned_cols=74 Identities=22% Similarity=0.403 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhcc
Q 047849 327 TLVNNLIERTRAPCKN---CLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILR 403 (651)
Q Consensus 327 ~l~~~~~~~i~~~i~~---~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~ 403 (651)
++++.+++.+.-.++. .|++.+. .++.|+++||.++.|.+.+++.+.||.++..+ .+.++.|+|||+.|+.-.
T Consensus 398 ~l~RAvlEgia~~~r~~l~~l~~~g~---~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~-~~~e~~alGAA~lA~~a~ 473 (515)
T 3i8b_A 398 NLARAFVEGLLCSQRDCLELIRSLGA---SITRILLIGGGAKSEAIRTLAPSILGMDVTRP-ATDEYVAIGAARQAAWVL 473 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC---CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEE-CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC---CCCEEEEECchhcCHHHHHHHHHHhCCceEec-CCcccHHHHHHHHHHHHc
Confidence 3444444444433333 3344443 57799999999999999999999999987653 456789999999998643
Q ss_pred C
Q 047849 404 G 404 (651)
Q Consensus 404 ~ 404 (651)
+
T Consensus 474 G 474 (515)
T 3i8b_A 474 S 474 (515)
T ss_dssp H
T ss_pred C
Confidence 3
|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.013 Score=64.29 Aligned_cols=74 Identities=22% Similarity=0.362 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH----cCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhc
Q 047849 327 TLVNNLIERTRAPCKNCLKD----ANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGIL 402 (651)
Q Consensus 327 ~l~~~~~~~i~~~i~~~l~~----a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l 402 (651)
++++.+++.+.-.++..++. .+. .++.|.++||.++.+.+.+++.+.||.++.. ..+.++.|+|||+.|+.-
T Consensus 377 ~l~RAvlEgia~~~~~~~~~l~~~~g~---~~~~i~~~GG~aks~~~~Qi~Adv~g~pV~~-~~~~e~~alGaA~la~~a 452 (501)
T 3g25_A 377 HFIRATLESLCYQTRDVMEAMSKDSGI---DVQSLRVDGGAVKNNFIMQFQADIVNTSVER-PEIQETTALGAAFLAGLA 452 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSC---CCSEEEEESGGGGCHHHHHHHHHHHTSEEEE-ESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecchhcCHHHHHHHHHHhCCceEe-cCCCcchHHHHHHHHHHH
Confidence 34444444444433333332 343 5779999999999999999999999988755 346779999999999865
Q ss_pred cC
Q 047849 403 RG 404 (651)
Q Consensus 403 ~~ 404 (651)
.+
T Consensus 453 ~G 454 (501)
T 3g25_A 453 VG 454 (501)
T ss_dssp TT
T ss_pred hC
Confidence 44
|
| >1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.97 Score=47.66 Aligned_cols=41 Identities=7% Similarity=0.135 Sum_probs=28.3
Q ss_pred cCCceEEeecchHHHhhhhcc---ccCCCeEEEEEeCCcceEEEEE
Q 047849 216 AGLDVQRIINEPTAASLSYGM---NNKEGLIAVFDLGGGTFDVSIL 258 (651)
Q Consensus 216 AGl~~~~li~Ep~AAAl~y~~---~~~~~~vlVvD~GggT~Dvsv~ 258 (651)
.|++ +.+.|+..|||++... .+..++++++-+|.| +-..++
T Consensus 186 ~~~p-v~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~giv 229 (406)
T 1z6r_A 186 TGVP-VYIQHDISAWTMAEALFGASRGARDVIQVVIDHN-VGAGVI 229 (406)
T ss_dssp HSSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEE
T ss_pred HCCC-EEEechhHHHHHHHHHhcCCCCCCcEEEEEECCc-EEEEEE
Confidence 4776 5799999999987432 222347888889887 445555
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.013 Score=64.48 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=43.6
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.++.|.++||.++.+.+.+++.+.||.++..... .++.|+|||+.|+.-.+
T Consensus 400 ~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~-~e~~alGaA~lA~~a~G 450 (508)
T 3ifr_A 400 APQRFFASDGGTRSRVWMGIMADVLQRPVQLLAN-PLGSAVGAAWVAAIGGG 450 (508)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEEEC-CSTHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCcccCHHHHHHHHHHhCCeEEecCC-CCchHHHHHHHHHHHhC
Confidence 4779999999999999999999999998866544 45889999999986444
|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.022 Score=62.27 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhcc
Q 047849 326 ETLVNNLIERTRAPCKNCLKDAN-ITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILR 403 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~-~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~ 403 (651)
.++++.+++.+.-.++..++... .....++.|.++||.++.+.+.+++.+.+|.++... .+.++.|+|||+.|+.-.
T Consensus 370 ~~~~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~a~n~~~~q~~Adv~g~pV~~~-~~~e~~alGaA~la~~a~ 447 (495)
T 2dpn_A 370 AHLARAALEGVAFQVRDVVLAMEEEAGVRLKVLKADGGMAQNRLFLKIQADLLGVPVAVP-EVTETTALGAALMAGVGA 447 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSCCCCCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccccCHHHHHHHHHHhCCeeEec-CCcccHHHHHHHHHHhhc
Confidence 34445555555444444444321 112356789999999999999999999999887654 455689999999987643
|
| >3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.013 Score=64.76 Aligned_cols=74 Identities=23% Similarity=0.363 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHH----HHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhc
Q 047849 327 TLVNNLIERTRAPCKNCL----KDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGIL 402 (651)
Q Consensus 327 ~l~~~~~~~i~~~i~~~l----~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l 402 (651)
.+++.+++.+.-.++..+ +..+. .++.|.++||+++.+.+.+++.+.||.++.++ ...++.|+|||+.|+.-
T Consensus 375 ~i~RAvlEgia~~~r~~le~l~~~~g~---~~~~i~v~GGgaks~~~~Qi~ADvlg~pV~~~-~~~E~~alGAA~lA~~a 450 (526)
T 3ezw_A 375 HIIRATLESIAYQTRDVLEAMQADSGI---RLHALRVDGGAVANNFLMQFQSDILGTRVERP-EVREVTALGAAYLAGLA 450 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC---CCSEEEEESGGGGCHHHHHHHHHHHTSEEEEE-SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCEEEEECchhhCHHHHHHHHHHHCCEEEeC-CCCchHHHHHHHHHHHH
Confidence 344444444433333333 34453 57799999999999999999999999887654 45678999999999875
Q ss_pred cC
Q 047849 403 RG 404 (651)
Q Consensus 403 ~~ 404 (651)
.+
T Consensus 451 ~G 452 (526)
T 3ezw_A 451 VG 452 (526)
T ss_dssp TT
T ss_pred hC
Confidence 54
|
| >4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.27 E-value=3 Score=42.42 Aligned_cols=47 Identities=26% Similarity=0.227 Sum_probs=32.4
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcCCCC---------CcCCccchheehhHHHh
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGKSPS---------KGVNPDEAVALGAAIQG 399 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~~~~---------~~~~p~~aVA~GAa~~a 399 (651)
+++.|+|-||.+..+.+.+.|++.+..... ...-.+.+.++|||.++
T Consensus 269 ~p~~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~ 324 (327)
T 4db3_A 269 DPHVVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGGVRGAAFLN 324 (327)
T ss_dssp CCSEEEEESGGGGCTHHHHHHHHHGGGGSCTTCCCCEEEECSCGGGHHHHHHHHTT
T ss_pred CCCEEEEeCcccchHHHHHHHHHHHHHHhccccCCCEEEECCCCCcHHHHHHHHHH
Confidence 346899999999888888888877642211 12234568889998765
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.012 Score=64.82 Aligned_cols=51 Identities=22% Similarity=0.226 Sum_probs=42.7
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.++.|.++||.++.|.+.+++.+.||.++..+ .+.++.|+|||++|+.-.+
T Consensus 425 ~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~-~~~e~~alGAA~lA~~a~G 475 (520)
T 4e1j_A 425 NDTVLRVDGGMVASDWTMQRLSDLLDAPVDRP-VILETTALGVAWLAGSRAG 475 (520)
T ss_dssp --CCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCCCHHHHHHHHHHHHHHT
T ss_pred CcceEEEeCccccCHHHHHHHHHHhCCeEEec-CCCccHHHHHHHHHHHHcC
Confidence 57799999999999999999999999987653 4577999999999986444
|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O | Back alignment and structure |
|---|
Probab=95.17 E-value=0.015 Score=63.90 Aligned_cols=51 Identities=24% Similarity=0.342 Sum_probs=44.0
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.++.|.++||.++.+.+.+++.+.||.++.. ..+.++.|+|||+.|+.-.+
T Consensus 403 ~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~-~~~~e~~alGaA~lA~~a~G 453 (506)
T 3h3n_X 403 DIPLLKVDGGAAKNDLLMQFQADILDIDVQR-AANLETTALGAAYLAGLAVG 453 (506)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHHTSEEEE-CSSSCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEecccccCHHHHHHHHHHhCCeEEe-cCCCcchhHHHHHHHHHHhC
Confidence 5679999999999999999999999988755 44677999999999986544
|
| >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=2.7 Score=42.94 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHh---cCCCCCcC---CccchheehhHHHhh
Q 047849 332 LIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIF---GKSPSKGV---NPDEAVALGAAIQGG 400 (651)
Q Consensus 332 ~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f---~~~~~~~~---~p~~aVA~GAa~~a~ 400 (651)
+.+.+.+.++++.+.. .++.|+|+||.+....+++.|.+.+ |.++..+. -.|.++++|++.+..
T Consensus 228 l~~~l~~~~~~~~~~~-----~~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~ 297 (330)
T 2ivn_A 228 AFAALVEVTERAVAHT-----EKDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGLRM 297 (330)
T ss_dssp HHHHHHHHHHHHHHHH-----CCSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-----CCCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChhHHHHHHHHHHH
Confidence 3344444455555543 3569999999999999999999887 44444333 346678888887544
|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.026 Score=61.91 Aligned_cols=50 Identities=28% Similarity=0.382 Sum_probs=42.9
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhcc
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILR 403 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~ 403 (651)
.++.|.++||.++.+.+.+++.+.||.++..+ .+.++.|+|||+.|+.-.
T Consensus 403 ~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~-~~~e~~alGaA~lA~~~~ 452 (504)
T 2d4w_A 403 DLTELRVDGGMVANELLMQFQADQLGVDVVRP-KVAETTALGAAYAAGIAV 452 (504)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHHHHHH
T ss_pred CcceEEEeCCcccCHHHHHHHHHHhCCeEEeC-CCCcchHHHHHHHHHhhc
Confidence 46799999999999999999999999887654 456789999999988643
|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.024 Score=62.07 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=42.9
Q ss_pred CC-CeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 353 DV-DEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 353 ~i-~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.+ +.|.++||.++.+.+.+++.+.||.++... .+.++.|+|||+.|+.-.+
T Consensus 406 ~~~~~i~~~GG~a~s~~~~Q~~Adv~g~pV~~~-~~~e~~alGaA~la~~~~G 457 (503)
T 2w40_A 406 EMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVS-KYKEVTSLGAAVLAGLEVK 457 (503)
T ss_dssp SCCSCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred CccceEEEeCccccCHHHHHHHHHHHCCeEEec-CCCcchHHHHHHHHHHHhC
Confidence 35 689999999999999999999999887654 4556899999999886443
|
| >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=94.27 E-value=2.8 Score=43.69 Aligned_cols=66 Identities=15% Similarity=0.248 Sum_probs=39.4
Q ss_pred CCCCeEEEEecCCCCH----------------HHHHHHHHHHHHcCCceEEeecchHHHhhhhccccC-CCeEEEEEeCC
Q 047849 188 KSVSKAVITVPAYFND----------------AQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNK-EGLIAVFDLGG 250 (651)
Q Consensus 188 ~~~~~~VITVPa~f~~----------------~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~-~~~vlVvD~Gg 250 (651)
..+..+.|++|...+. .-++.+.+. .|++ +.+.|+..|||++...... .++++++-+|.
T Consensus 147 ~~i~gigi~~pG~vd~~~g~v~~~~~l~w~~~~l~~~l~~~---~~~p-V~v~NDanaaalaE~~~g~~~~~~v~l~~Gt 222 (380)
T 2hoe_A 147 SKLSALTVAAPGPIDTERGIIIDPRNFPLSQIPLANLLKEK---YGIE-VWVENDADMGAVGEKWYTKRDDSFAWILTGK 222 (380)
T ss_dssp CCCCEEEEEESSCEETTTTEECCCSSCTTBTSCHHHHHHHH---HCSE-EEEEEHHHHHHHHHHHHTTCCSCEEEEEESS
T ss_pred CcEEEEEEEeeccEECCCCEEeccCCCCCcCCChHHHHHHH---hCCC-EEEechHHHHHHHHHHhCCCCCcEEEEEeCC
Confidence 3456677788765332 112333333 4776 5899999999987432111 15778888887
Q ss_pred cceEEEEE
Q 047849 251 GTFDVSIL 258 (651)
Q Consensus 251 gT~Dvsv~ 258 (651)
| +-..++
T Consensus 223 G-iG~giv 229 (380)
T 2hoe_A 223 G-IGAGII 229 (380)
T ss_dssp S-CEEEEE
T ss_pred c-eEEEEE
Confidence 7 445554
|
| >3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A | Back alignment and structure |
|---|
Probab=94.23 E-value=0.56 Score=46.04 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=17.7
Q ss_pred EEEEEcCCceEEEEEEeCCc
Q 047849 59 IIGIDLGTTNSCVALMEGKN 78 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~ 78 (651)
.+.||.|+|+++.++++++.
T Consensus 5 ~L~IDIGNT~ik~gl~~~~~ 24 (249)
T 3bex_A 5 YLLVDVGNTHSVFSITEDGK 24 (249)
T ss_dssp EEEEEECSSEEEEEEESSSS
T ss_pred EEEEEECCCeEEEEEEECCE
Confidence 79999999999999998653
|
| >1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=94.20 E-value=1.8 Score=45.94 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=28.2
Q ss_pred cCCceEEeecchHHHhhhhccc---cCCCeEEEEEeCCcceEEEEE
Q 047849 216 AGLDVQRIINEPTAASLSYGMN---NKEGLIAVFDLGGGTFDVSIL 258 (651)
Q Consensus 216 AGl~~~~li~Ep~AAAl~y~~~---~~~~~vlVvD~GggT~Dvsv~ 258 (651)
.|++ +.+.|+..|||++-... +..++++++-+|.| +-..++
T Consensus 208 ~~~p-V~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~giv 251 (429)
T 1z05_A 208 TGLP-VFVANDTRAWALAEKLFGHSQDVDNSVLISIHHG-LGAGIV 251 (429)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEE
T ss_pred hCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCc-EEEEEE
Confidence 4776 48999999999874322 22347888888887 445555
|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=94.16 E-value=1.9 Score=43.85 Aligned_cols=53 Identities=21% Similarity=0.418 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCCceEEeecchHHHhhhh-cc----ccCCCeEEEEEeCCcceEEEEEE
Q 047849 206 RQATKDAGRIAGLDVQRIINEPTAASLSY-GM----NNKEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 206 r~~l~~Aa~~AGl~~~~li~Ep~AAAl~y-~~----~~~~~~vlVvD~GggT~Dvsv~~ 259 (651)
...+..+-+..|+++ .+|+-.+=|.+.| +. ...++..+|+|+|||+|.+++++
T Consensus 92 ~~fl~~i~~~tG~~i-~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~ 149 (315)
T 3mdq_A 92 QVLIDRIKKEVNIDV-EVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGN 149 (315)
T ss_dssp HHHHHHHHHHHCCCE-EECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEEC
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEE
Confidence 445566666789998 5565444443333 22 22224799999999999999986
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.036 Score=60.45 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=38.8
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhh
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGG 400 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~ 400 (651)
.++.|.++||.++.+.+.+++.+.||.++.... .++.|.|||+.|.
T Consensus 393 ~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~--~e~~alGaa~~A~ 438 (489)
T 2uyt_A 393 DFSQLHIVGGGCQNTLLNQLCADACGIRVIAGP--VEASTLGNIGIQL 438 (489)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHHTSEEEECC--TTHHHHHHHHHHH
T ss_pred CCCEEEEeCChhhhHHHHHHHHHHHCCeeecCC--ccHhHHHHHHHHH
Confidence 467999999999999999999999999876443 5889999955544
|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=92.49 E-value=0.17 Score=54.91 Aligned_cols=72 Identities=8% Similarity=0.007 Sum_probs=55.1
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHH-hcCCCCCcCCccchheehhHHHhhhc
Q 047849 326 ETLVNNLIER--TRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEI-FGKSPSKGVNPDEAVALGAAIQGGIL 402 (651)
Q Consensus 326 e~l~~~~~~~--i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~-f~~~~~~~~~p~~aVA~GAa~~a~~l 402 (651)
..+++.+++. +.-.++..++...- .+.|.++||++++|.+.+++.+. ||.++.++. ..++.|+|||++|+.-
T Consensus 362 ~~l~RA~lE~~Gia~~~r~~l~~~~~----~~~i~~~GG~a~s~~w~Qi~ADv~~g~pV~~~~-~~e~~alGAA~lA~~a 436 (482)
T 3h6e_A 362 DWFERRAAACLYAALVADTALDLIGS----TGRILVEGRFAEADVFVRALASLRPDCAVYTAN-AHNDVSFGALRLIDPG 436 (482)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTTC----CSEEEEESGGGGCHHHHHHHHHHSTTSEEEEES-SCCCTTGGGHHHHCTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcC----CCeEEEeCCcccCHHHHHHHhhhcCCCeEEEcC-CCchHHHHHHHHhCcc
Confidence 5666666663 55555666665432 26899999999999999999999 999886654 4568899999999863
|
| >1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* | Back alignment and structure |
|---|
Probab=92.37 E-value=0.18 Score=55.19 Aligned_cols=52 Identities=29% Similarity=0.477 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCceEEeecchHHHhhhh-cccc--C-CCeEEEEEeCCcceEEEEEE
Q 047849 207 QATKDAGRIAGLDVQRIINEPTAASLSY-GMNN--K-EGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 207 ~~l~~Aa~~AGl~~~~li~Ep~AAAl~y-~~~~--~-~~~vlVvD~GggT~Dvsv~~ 259 (651)
..+..+-+..|+++ .+|+..+=|.+.| +... . .+..+|+|+|||+|.+++.+
T Consensus 100 ~fl~~i~~~tG~~i-~vIsG~eEA~l~~~gv~~~~~~~~~~lviDIGGGStEl~~~~ 155 (513)
T 1u6z_A 100 DFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGE 155 (513)
T ss_dssp HHHHHHTTTCSSCE-EECCHHHHHHHHHHHHHHHSCCCSCEEEEEECSSCEEEEEEE
T ss_pred HHHHHHHHHHCCCE-EEeCHHHHHHHHHHHHHhhccCCCCEEEEEECCCcEEEEEEe
Confidence 44555555679987 6777666555554 2211 1 12689999999999999875
|
| >3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A | Back alignment and structure |
|---|
Probab=90.50 E-value=0.36 Score=49.10 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=26.0
Q ss_pred EeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEE
Q 047849 222 RIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 222 ~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~ 259 (651)
....-|.|.|...+.. ..+..+++|+||.|||+..+.
T Consensus 109 ~aaanw~ASa~~~A~~-~~~~~llvDIGsTTTDIipi~ 145 (334)
T 3cet_A 109 VSASNWCGTAKWVSKN-IEENCILVDMGSTTTDIIPIV 145 (334)
T ss_dssp TBCCSSHHHHHHHHHH-TCSSEEEEEECSSCEEEEEEE
T ss_pred HHhcCHHHHHHHHHHh-cCCCEEEEEcCcchhhhhhhc
Confidence 3556676777633332 213689999999999999886
|
| >2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* | Back alignment and structure |
|---|
Probab=90.10 E-value=7.8 Score=39.42 Aligned_cols=60 Identities=8% Similarity=-0.016 Sum_probs=40.9
Q ss_pred CCCeEEEEecCCCCHHHHHHHHHHHHHc-C--CceEEeecchHHHhhhhccccCCCeEEEEEeCCcc
Q 047849 189 SVSKAVITVPAYFNDAQRQATKDAGRIA-G--LDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGT 252 (651)
Q Consensus 189 ~~~~~VITVPa~f~~~qr~~l~~Aa~~A-G--l~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT 252 (651)
++..+.|++|...+......+++..+.. | .-.+.+.|+-.|||+++ . ..+.+++=+|.|.
T Consensus 70 ~i~gigi~~pG~vd~~~~~~l~~~l~~~~~~~~~pv~v~NDa~aaa~a~-~---~~~~v~v~~GTGi 132 (347)
T 2ch5_A 70 PLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATA-T---PDGGVVLISGTGS 132 (347)
T ss_dssp CBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHHH-C---SSCEEEEEESSSE
T ss_pred ceeEEEEeccCCCchHHHHHHHHHHHHhcCCCCceEEEECcHHHHHHhh-C---CCCcEEEEEcCCc
Confidence 5778999999998876555666655543 3 12468999999999984 2 1344555556654
|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* | Back alignment and structure |
|---|
Probab=89.96 E-value=0.5 Score=48.16 Aligned_cols=54 Identities=24% Similarity=0.291 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCceEEeecchHHHhhhhcccc---CCCeEEEEEeCCcceEEEEEE
Q 047849 206 RQATKDAGRIAGLDVQRIINEPTAASLSYGMNN---KEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 206 r~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~---~~~~vlVvD~GggT~Dvsv~~ 259 (651)
...+..+-+..|+++--|-.|.+|...+.+... .....+|+|+|||+|.+++.+
T Consensus 100 ~~fl~~v~~~~G~~i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~ 156 (315)
T 1t6c_A 100 EEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGK 156 (315)
T ss_dssp HHHHHHHHHHTCCCEEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEe
Confidence 344555555789998555555565544333211 134799999999999999986
|
| >3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} | Back alignment and structure |
|---|
Probab=89.25 E-value=0.83 Score=47.08 Aligned_cols=54 Identities=30% Similarity=0.439 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCceEEeecchHHHhhhh-c----ccc--CCCeEEEEEeCCcceEEEEEEE
Q 047849 206 RQATKDAGRIAGLDVQRIINEPTAASLSY-G----MNN--KEGLIAVFDLGGGTFDVSILEI 260 (651)
Q Consensus 206 r~~l~~Aa~~AGl~~~~li~Ep~AAAl~y-~----~~~--~~~~vlVvD~GggT~Dvsv~~~ 260 (651)
...+..+-+..|+++ .+|+-.+=|.+.| + ... ..+.++|+|+|||+|+++++.-
T Consensus 105 ~~fl~~v~~~tGi~i-eVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~ 165 (343)
T 3cer_A 105 EEFEDEIERILGVRP-EVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGD 165 (343)
T ss_dssp HHHHHHHHHHHSSCC-EECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCC
T ss_pred HHHHHHHHHHHCCCE-EEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeec
Confidence 345556666679987 6777666555544 2 222 2237999999999999999753
|
| >2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A | Back alignment and structure |
|---|
Probab=85.56 E-value=1 Score=48.26 Aligned_cols=54 Identities=13% Similarity=-0.009 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCCc--eEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEE
Q 047849 204 AQRQATKDAGRIAGLD--VQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSIL 258 (651)
Q Consensus 204 ~qr~~l~~Aa~~AGl~--~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~ 258 (651)
.-++.+.++....|++ ++.++|+..|++++-... ..++++.+=+|-|+=-.-+.
T Consensus 164 ~v~~~L~~~l~r~glpv~vval~NDa~~tll~e~~~-~~~~~iglilGTGvgg~~i~ 219 (457)
T 2yhx_A 164 KLISAMXNAXFPAGDXXXSVADIXDSHGILXXVNYT-DAXIKMGIIFGSGVNAAYWC 219 (457)
T ss_dssp SBHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHH-CTTEEEEEEESSSEEEEEEE
T ss_pred HHHHHHHHhHhhcCCcceeEEEEecchhhccchhhc-CCccEEEEEECcEEEEEEEE
Confidence 4567777887666765 579999999999986652 22356666667664443333
|
| >3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=81.63 E-value=3 Score=45.37 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCceEEeecchHHHhhhh-cccc--CCCeEEEEEeCCcceEEEEEE
Q 047849 205 QRQATKDAGRIAGLDVQRIINEPTAASLSY-GMNN--KEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 205 qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y-~~~~--~~~~vlVvD~GggT~Dvsv~~ 259 (651)
....+..+-+..|+++ .+|+-.+=|.+.| +... .....+|+|+|||+|.+++++
T Consensus 102 ~~~fl~~i~~~tG~~i-evIsG~EEA~l~~~gv~~~~~~~~~lvvDIGGGStEl~~~~ 158 (508)
T 3hi0_A 102 GPDFIREAEAILGCEI-EVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIK 158 (508)
T ss_dssp HHHHHHHHHHHHTSCE-EECCHHHHHHHHHHHHHHHSSSCEEEEEEECSSCEEEEEEE
T ss_pred HHHHHHHHHHHHCCCe-EEecHHHHHHHHHHHHHhcCCCCCeEEEEeCCCceEEEEee
Confidence 3455666666789988 6776665555444 2221 122459999999999999987
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=81.16 E-value=1.3 Score=48.38 Aligned_cols=29 Identities=34% Similarity=0.501 Sum_probs=21.9
Q ss_pred ccccCCCCCCcEEEEEcCCceEEEEEEeCC
Q 047849 48 RPFSSKPAGNDIIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 48 ~~~~~~~~~~~vvGID~GTt~s~va~~~~~ 77 (651)
++|..|| ..+++|||+|||++++++++..
T Consensus 18 ~~~~~MM-~~~~lgIDiGtts~k~~l~d~~ 46 (520)
T 4e1j_A 18 LYFQSMM-GGYILAIDQGTTSTRAIVFDGN 46 (520)
T ss_dssp CCCCCCC-SCEEEEEEECSSEEEEEEECTT
T ss_pred HHHHHHh-hCeEEEEEeCCcceEEEEECCC
Confidence 3444444 3579999999999999999753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 651 | ||||
| d1dkgd1 | 183 | c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas | 3e-81 | |
| d1bupa1 | 185 | c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas | 3e-69 | |
| d1yuwa1 | 159 | b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus | 2e-68 | |
| d1dkgd2 | 198 | c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP | 4e-64 | |
| d1bupa2 | 193 | c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP | 3e-54 | |
| d1dkza2 | 118 | b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxI | 4e-53 | |
| d1u00a2 | 115 | b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc6 | 7e-48 | |
| d1jcea1 | 137 | c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB | 5e-28 | |
| d1dkza1 | 97 | a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: | 6e-28 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 1e-24 | |
| d2zgya2 | 163 | c.55.1.1 (A:158-320) Plasmid segregation protein P | 3e-24 | |
| d1u00a1 | 112 | a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) | 1e-21 | |
| d2fsja1 | 161 | c.55.1.12 (A:165-325) Hypothetical protein Ta0583 | 1e-15 |
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 252 bits (645), Expect = 3e-81
Identities = 124/181 (68%), Positives = 153/181 (84%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
IIGIDLGTTNSCVA+M+G P+V+EN+EG RTTPS++A+ Q GE LVG PAKRQAVTNP
Sbjct: 2 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQ 61
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKM 178
NTLF KRLIGR+F D + Q+++ ++ +KI+ A NGDAWVE GQ+ +P QI A VL KM
Sbjct: 62 NTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKM 121
Query: 179 KETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNN 238
K+TAE YLG+ V++AVITVPAYFNDAQRQATKDAGRIAGL+V+RIINEPTAA+L+YG++
Sbjct: 122 KKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK 181
Query: 239 K 239
Sbjct: 182 G 182
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 221 bits (563), Expect = 3e-69
Identities = 99/184 (53%), Positives = 130/184 (70%), Gaps = 4/184 (2%)
Query: 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPT 118
+GIDLG+T SCV + + ++I N +G+RTTPS VAF E L+G AK Q NPT
Sbjct: 3 AVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPT 61
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVR-APNGDAWVEANGQ--QYSPSQIGAFVL 175
NT+F KRLIGR+FDD Q +M+ + +V A VE G+ + P ++ + VL
Sbjct: 62 NTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVL 121
Query: 176 TKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYG 235
TKMKE AE+YLGK+V+ AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAA+++YG
Sbjct: 122 TKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 181
Query: 236 MNNK 239
++ K
Sbjct: 182 LDKK 185
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 218 bits (556), Expect = 2e-68
Identities = 95/158 (60%), Positives = 123/158 (77%), Gaps = 1/158 (0%)
Query: 404 GDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQG 463
+V++LLLLDVTPLSLGIET GG+ T LI RNTTIPTK++Q F+T +DNQ V I+V +G
Sbjct: 2 ENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEG 61
Query: 464 EREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRS 523
ER M DN LG+FEL GIPPAPRG+PQIEVTFDIDANGI+ VSA DK+TGKE +ITI +
Sbjct: 62 ERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITN 121
Query: 524 -SGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQAD 560
G LS+++IE+MV+EAE + D +++ + +N +
Sbjct: 122 DKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 208 bits (530), Expect = 4e-64
Identities = 102/193 (52%), Positives = 130/193 (67%), Gaps = 33/193 (17%)
Query: 243 IAVFDLGGGTFDVSILEIS----NGVFE-----------------------------DEG 269
IAV+DLGGGTFD+SI+EI FE D+G
Sbjct: 5 IAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQG 64
Query: 270 IDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLV 329
IDL D LA+QRL+EAAEKAKIELSS QTD+NLP+ITADA+G KH+NI +TR+K E+LV
Sbjct: 65 IDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLV 124
Query: 330 NNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDE 389
+L+ R+ K L+DA ++ D+D+V+LVGG TR+P VQ+ V+E FGK P K VNPDE
Sbjct: 125 EDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDE 184
Query: 390 AVALGAAIQGGIL 402
AVA+GAA+QGG+L
Sbjct: 185 AVAIGAAVQGGVL 197
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 181 bits (461), Expect = 3e-54
Identities = 71/193 (36%), Positives = 106/193 (54%), Gaps = 34/193 (17%)
Query: 240 EGLIAVFDLGGGTFDVSILEISNGVFE-----------------------------DEGI 270
E + +FDLGGGTFDVSIL I +G+FE
Sbjct: 4 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKK 63
Query: 271 DLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVN 330
D+S+++ A++RLR A E+AK LSS+TQ I + + ++TR++FE L
Sbjct: 64 DISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARFEELNA 119
Query: 331 NLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIF-GKSPSKGVNPDE 389
+L T P + L+DA + + +++LVGG TR+PK+Q+++ + F GK +K +NPDE
Sbjct: 120 DLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDE 179
Query: 390 AVALGAAIQGGIL 402
AVA GAA+Q IL
Sbjct: 180 AVAYGAAVQAAIL 192
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 175 bits (446), Expect = 4e-53
Identities = 89/117 (76%), Positives = 102/117 (87%)
Query: 410 LLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAS 469
LLLDVTPLSLGIET+GG+ T LI +NTTIPTK SQVFSTA DNQ+ V I VLQGER+ A+
Sbjct: 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAA 61
Query: 470 DNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGG 526
DNKSLG+F L GI PAPRGMPQIEVTFDIDA+GI+ VSAKDK +GKEQ+ITI++S G
Sbjct: 62 DNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 161 bits (409), Expect = 7e-48
Identities = 57/115 (49%), Positives = 80/115 (69%)
Query: 412 LDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDN 471
+DV PLSLG+ET+GG+ ++I RNTTIP ++Q F+T D QT + I V+QGERE+ D
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 472 KSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGG 526
+SL F L GIP P G I VTF +DA+G+++V+A +K+TG E I ++ S G
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 107 bits (267), Expect = 5e-28
Identities = 41/179 (22%), Positives = 61/179 (34%), Gaps = 45/179 (25%)
Query: 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQK-GELLVGTPAKRQAVTNPT 118
IGIDLGT N+ V L ++ N PSV+A + GE+L + +
Sbjct: 3 IGIDLGTANTLVFLRGKG---IVVNE------PSVIAIDSTTGEILKVGLEAKNMIGKTP 53
Query: 119 NTLFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKM 178
T+ + + D +L
Sbjct: 54 ATIKAIRPMRDGVIADYTVA---------------------------------LVMLRYF 80
Query: 179 KETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMN 237
A+ + + VI VP D +R+A DAG AG +I EP AA++ G N
Sbjct: 81 INKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAI--GSN 137
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 105 bits (264), Expect = 6e-28
Identities = 30/94 (31%), Positives = 56/94 (59%)
Query: 527 LSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIE 586
L+EDEI+KMV++AE +A+ D + + L+ RNQ D ++S K + E +K+P++ IE
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE 60
Query: 587 DAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQ 620
A+ L A+ ++ I++K+ + K+ +
Sbjct: 61 SALTALETALKGEDKAAIEAKMQELAQVSQKLME 94
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 99.6 bits (247), Expect = 1e-24
Identities = 25/173 (14%), Positives = 57/173 (32%), Gaps = 18/173 (10%)
Query: 243 IAVFDLGGGTFDVSILEISNGVFED---------------EGIDLSKDRLALQRLREAAE 287
V D+GGGT +V+++ + + V + + + + +
Sbjct: 9 NMVVDIGGGTTEVAVISLGSIVTWESIRIAGDEMDEAIVQYVRETYRVAIGERTAERVKI 68
Query: 288 KAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDA 347
+ S ++ D S +TL + + +++ + L+
Sbjct: 69 EIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKT 128
Query: 348 NITTK---DVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAI 397
+ L GG + + + ++ + G S + P AVA GA +
Sbjct: 129 PPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGM 181
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Score = 97.7 bits (242), Expect = 3e-24
Identities = 18/165 (10%), Positives = 46/165 (27%), Gaps = 9/165 (5%)
Query: 238 NKEGLIAVFDLGGGTFDVSILEISNGVFEDEGIDLSKDRLALQRLREAAEKAKIELSSTT 297
++ + + DLGG T D+S + + I + + +
Sbjct: 4 DELDSLLIIDLGGTTLDISQ--VMGKLSGISKIYGDSSLGVSLVTSAVKDALSLART--K 59
Query: 298 QTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEV 357
+ I +L + ++V + + + + V
Sbjct: 60 GSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHV 119
Query: 358 LLVGGMTRVPKVQEVVSEIFGKSPSKGV---NPDEAVALGAAIQG 399
+++GG + + V + + N + G + G
Sbjct: 120 MVIGGGAE--LICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 162
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 112 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 88.0 bits (218), Expect = 1e-21
Identities = 24/107 (22%), Positives = 49/107 (45%)
Query: 527 LSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIE 586
L++ EI M+K++ +A++D + + L + + +A + S+ +L + + + I+
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVID 60
Query: 587 DAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAGGSGGGAASG 633
DA A L + D+VD I+ + +K S A G
Sbjct: 61 DAAAHLSEVAQGDDVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKG 107
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 72.9 bits (178), Expect = 1e-15
Identities = 26/162 (16%), Positives = 49/162 (30%), Gaps = 16/162 (9%)
Query: 238 NKEGLIAVFDLGGGTFDVSILEISNGVFEDE---GIDLSKDRLALQRLREAAEKAKIELS 294
+ G V D+G T DV + + + E + + R+ +
Sbjct: 3 QQPGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGDAISALSRKI--AKETGFV 60
Query: 295 STTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDV 354
+ ++ E L N +IE R + + V
Sbjct: 61 VPFDLAQEALSHPVMFRQKQVGGPEVSGPILEDLANRIIENIRLNLRGEV-------DRV 113
Query: 355 DEVLLVGGMTRVPKVQEVVSEIFGKSPSKGV--NPDEAVALG 394
++ VGG + + + + EI + K + A ALG
Sbjct: 114 TSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALG 153
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 651 | |||
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 100.0 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1yuwa1 | 159 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 99.97 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 99.97 | |
| d1dkza2 | 118 | DnaK {Escherichia coli [TaxId: 562]} | 99.94 | |
| d1u00a2 | 115 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.93 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.87 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.77 | |
| d1u00a1 | 112 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.37 | |
| d1dkza1 | 97 | DnaK {Escherichia coli [TaxId: 562]} | 99.37 | |
| d1ud0a_ | 84 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.36 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 99.23 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 99.17 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 99.01 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 98.58 | |
| d2d0oa3 | 203 | Diol dehydratase-reactivating factor large subunit | 97.04 | |
| d1nbwa3 | 202 | ATPase domain of the glycerol dehydratase reactiva | 96.8 | |
| d1k8ka2 | 258 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 96.54 | |
| d1r59o2 | 235 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 95.81 | |
| d2fxua2 | 225 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 95.68 | |
| d2fxua1 | 140 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 95.64 | |
| d2p3ra2 | 247 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 95.4 | |
| d1k8ka1 | 158 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 95.28 | |
| d1k8kb1 | 190 | Actin-related protein 2, Arp2 {Cow (Bos taurus) [T | 95.11 | |
| d1e4ft1 | 193 | Cell division protein FtsA {Thermotoga maritima [T | 94.87 | |
| d1zc6a1 | 114 | Probable N-acetylglucosamine kinase CV2896 {Chromo | 94.56 | |
| d2fsja2 | 164 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 93.89 | |
| d2ewsa1 | 267 | Type II pantothenate kinase, CoaW {Staphylococcus | 92.07 | |
| d2zgya1 | 157 | Plasmid segregation protein ParM {Escherichia coli | 89.45 | |
| d1sz2a1 | 319 | Glucokinase Glk {Escherichia coli [TaxId: 562]} | 89.1 | |
| d2ch5a2 | 117 | N-acetylglucosamine kinase, NAGK {Human (Homo sapi | 88.67 | |
| d2p3ra1 | 252 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 86.36 | |
| d1t6ca2 | 180 | Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 | 81.46 | |
| d1woqa1 | 129 | Inorganic polyphosphate/ATP-glucomannokinase PPGMK | 81.07 | |
| d1u6za3 | 177 | Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 | 80.15 |
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=100.00 E-value=2.2e-39 Score=309.43 Aligned_cols=181 Identities=69% Similarity=1.102 Sum_probs=174.8
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHHH
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQ 138 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~~ 138 (651)
|||||||||||+||++.++.++++.|.+|++.+||+++|.+++++++|+.|..+..++|.++++++|||||+.+.++.++
T Consensus 2 VvGIDfGTt~s~va~~~~~~~~ii~n~~~~~~~ps~v~~~~~~~~~~G~~A~~~~~~~p~~~i~~~KrllG~~~~~~~~~ 81 (183)
T d1dkgd1 2 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQ 81 (183)
T ss_dssp CCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHHH
T ss_pred EEEEEcChhcEEEEEEECCEEEEEEcCCCcccccceeeecCCCCEEccHHHHHhhhcCCccEEeeeHHHcCCCCCcHHHH
Confidence 79999999999999999999999999999999999999987889999999999999999999999999999999999999
Q ss_pred HHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCC
Q 047849 139 KEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGL 218 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AGl 218 (651)
.....+||++....++...+...++.++|+++++++|++|++.++++++.++.++|||||++|++.||++|++||++|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~~r~~l~~Aa~~AG~ 161 (183)
T d1dkgd1 82 RDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGL 161 (183)
T ss_dssp HHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHTTC
T ss_pred hhhhcCCEEEEEcCCCcEEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeecchHHHhhhhccccC
Q 047849 219 DVQRIINEPTAASLSYGMNNK 239 (651)
Q Consensus 219 ~~~~li~Ep~AAAl~y~~~~~ 239 (651)
+++++++||+|||++|+++++
T Consensus 162 ~~~~li~EP~AAAl~Ygl~k~ 182 (183)
T d1dkgd1 162 EVKRIINEPTAAALAYGLDKG 182 (183)
T ss_dssp EESCCCBHHHHHHHHHTCCC-
T ss_pred CEEEEecCHHHHHHHhcccCC
Confidence 999999999999999998753
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.3e-37 Score=295.81 Aligned_cols=180 Identities=54% Similarity=0.879 Sum_probs=165.8
Q ss_pred cEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHH
Q 047849 58 DIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQT 137 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~ 137 (651)
.|||||||||||+||++.+|.++++.|.+|++++||+|+|. ++++++|..|..+...+|.++++++|||||+.++++.+
T Consensus 2 ~vvGIDfGTt~s~va~~~~g~~~ii~~~~~~r~~Ps~i~~~-~~~~~vG~~a~~~~~~~p~~~i~~~KrllG~~~~~~~~ 80 (185)
T d1bupa1 2 PAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVV 80 (185)
T ss_dssp CCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEEC-SSCEEETHHHHTTTTTCGGGEECCHHHHTTCCTTCHHH
T ss_pred CEEEEEcChhcEEEEEEECCEEEEEECCCCCccceeEEEEC-CCcEEEeechHHHhhcCcccchhHHHHHhCCCCccHHH
Confidence 58999999999999999999999999999999999999995 67899999999999999999999999999999999999
Q ss_pred HHHhhcceeEEEECCCCCeE--EE--eCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHH
Q 047849 138 QKEMQMVSYKIVRAPNGDAW--VE--ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAG 213 (651)
Q Consensus 138 ~~~~~~~~~~~~~~~~g~~~--v~--~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa 213 (651)
+...+.+++.+.... +... +. ...+.++|++|++++|++|++.++++++.++.++|||||++|++.||+++++||
T Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~el~a~~l~~l~~~a~~~~~~~~~~~VitvPa~f~~~qr~~~~~Aa 159 (185)
T d1bupa1 81 QSDMKHWPFMVVNDA-GRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 159 (185)
T ss_dssp HHHHTTCSSEEEEET-TEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHhhcCCceEEcCC-CCccEEEEEcCCceEEcHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCHHHHHHHHHHH
Confidence 999999999888644 3332 33 334679999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEeecchHHHhhhhccccC
Q 047849 214 RIAGLDVQRIINEPTAASLSYGMNNK 239 (651)
Q Consensus 214 ~~AGl~~~~li~Ep~AAAl~y~~~~~ 239 (651)
++|||++++||+||+|||++|+++++
T Consensus 160 ~~AGl~~~~li~EP~AAAl~Ygldkk 185 (185)
T d1bupa1 160 TIAGLNVLRIINEPTAAAIAYGLDKK 185 (185)
T ss_dssp HHTTCEEEEEEEHHHHHHHHTTTTSC
T ss_pred HHcCCCeEEEEcCHHHHHHHhcccCC
Confidence 99999999999999999999998753
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=3.4e-34 Score=262.76 Aligned_cols=158 Identities=60% Similarity=0.916 Sum_probs=151.8
Q ss_pred cCCcceeEEEecccCccceeecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCC
Q 047849 403 RGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGI 482 (651)
Q Consensus 403 ~~~~~~~~~~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~ 482 (651)
|++++++++.|++|+||||++.+|.|.+|||||++||+++++.|+|..|||+.+.|+|||||+..+.+|.+||+|.|+++
T Consensus 1 ~~~v~~~~l~DV~p~slGie~~gg~~~~iI~rnt~iP~~~~~~f~T~~d~Q~~v~i~i~qGe~~~~~~n~~lg~f~l~~i 80 (159)
T d1yuwa1 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGI 80 (159)
T ss_dssp CCCTTSSCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECC
T ss_pred CCccceEEEEEecCCceEEEEcCCEEEEEEcCCcccceeeeEEEeeccCCCcEEEEEEEcCchhhccCccEEEEEEECCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCeeEEEEEEcCCeeEEEEEEecCCCceeeEEecCC-CCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 047849 483 PPAPRGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSS-GGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQAD 560 (651)
Q Consensus 483 ~~~~~g~~~i~v~f~~d~~G~l~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le 560 (651)
||+|+|.++|+|+|++|.||+|+|+|.++.||++.++.|... +.|+++||+++++++++++.+|++.|++.++||.||
T Consensus 81 p~~~~G~~~I~Vtf~id~nGil~V~A~d~~Tg~~~~i~I~~~~~~Ls~eEIek~i~eae~~~~eDe~~r~~ieakn~lE 159 (159)
T d1yuwa1 81 PPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159 (159)
T ss_dssp CCCSTTCCCEEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCEECS
T ss_pred CcCCCCCceEEEEEEEcCCCeEEEEEEEcCCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999986 569999999999999999999999999988888765
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=99.97 E-value=1.7e-31 Score=257.39 Aligned_cols=162 Identities=63% Similarity=0.993 Sum_probs=149.9
Q ss_pred eEEEEEeCCcceEEEEEEEec----cccc-----------------------------ccCCCCccCHHHHHHHHHHHHH
Q 047849 242 LIAVFDLGGGTFDVSILEISN----GVFE-----------------------------DEGIDLSKDRLALQRLREAAEK 288 (651)
Q Consensus 242 ~vlVvD~GggT~Dvsv~~~~~----~~~~-----------------------------~~~~~~~~~~~~~~~L~~~~e~ 288 (651)
+||||||||||||+|++++.. +.++ +++.++..+++.+.+|+.+||+
T Consensus 4 ~vlV~D~GggT~Dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~~e~ 83 (198)
T d1dkgd2 4 TIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEK 83 (198)
T ss_dssp EEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcEEEEEEEEEccCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHH
Confidence 799999999999999999863 2222 5577888899999999999999
Q ss_pred hhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHh
Q 047849 289 AKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPK 368 (651)
Q Consensus 289 ~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~ 368 (651)
+|+.||.+.++.+.++.+..+..++.++.++|||++|+++++|+++++.++|.++|+++++++.+|+.|+|+||+||+|+
T Consensus 84 ~K~~Ls~~~~~~i~~~~~~~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~a~~~~~~Id~v~lvGG~sr~p~ 163 (198)
T d1dkgd2 84 AKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPM 163 (198)
T ss_dssp HHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGSHH
T ss_pred HHHHhcCCCeEEEEEeeeecCCCCCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHCcEEEEEcCccCCHH
Confidence 99999999999999998888777777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcCCccchheehhHHHhhhcc
Q 047849 369 VQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILR 403 (651)
Q Consensus 369 i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~ 403 (651)
|++.|++.|+.++..+.||++|||.|||++|+.+|
T Consensus 164 l~~~i~~~f~~~~~~~~~p~~aVa~GAa~~aa~lS 198 (198)
T d1dkgd2 164 VQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 198 (198)
T ss_dssp HHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHCCCCCCCCChHHHHHHHHHHHHHhcC
Confidence 99999999998899999999999999999999875
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=5.1e-30 Score=246.28 Aligned_cols=158 Identities=44% Similarity=0.744 Sum_probs=145.7
Q ss_pred eEEEEEeCCcceEEEEEEEeccccc-----------------------------ccCCCCccCHHHHHHHHHHHHHhhhh
Q 047849 242 LIAVFDLGGGTFDVSILEISNGVFE-----------------------------DEGIDLSKDRLALQRLREAAEKAKIE 292 (651)
Q Consensus 242 ~vlVvD~GggT~Dvsv~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~L~~~~e~~K~~ 292 (651)
+||||||||||||+|++++.++.++ +.+.++..+++.+.+|+.+||++|+.
T Consensus 6 ~VlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ 85 (193)
T d1bupa2 6 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRT 85 (193)
T ss_dssp EEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCeEEEEEEEEeCCEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhhc
Confidence 8999999999999999998776554 44667788899999999999999999
Q ss_pred cCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHH
Q 047849 293 LSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEV 372 (651)
Q Consensus 293 Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~ 372 (651)
||.+.++.+.++.+..+ .++.++|||++|+++++|+++++.++++++|+++++.+.+|+.|+||||+|++|+|++.
T Consensus 86 ls~~~~~~~~~~~~~~~----~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~ 161 (193)
T d1bupa2 86 LSSSTQASIEIDSLYEG----IDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKL 161 (193)
T ss_dssp HTTSSEEEEEEEEEETT----EEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHH
T ss_pred cCCCceEEEEEecccCC----CccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHH
Confidence 99999999999887765 78899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CCCCCcCCccchheehhHHHhhhcc
Q 047849 373 VSEIFG-KSPSKGVNPDEAVALGAAIQGGILR 403 (651)
Q Consensus 373 l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~l~ 403 (651)
|++.|+ .++..+.||++|||+|||++|+.++
T Consensus 162 i~~~f~~~~i~~~~~p~~aVa~GaA~~aa~ls 193 (193)
T d1bupa2 162 LQDFFNGKELNKSINPDEAVAYGAAVQAAILS 193 (193)
T ss_dssp HHHHTTTCCCBCSSCGGGHHHHHHHHHHHHHC
T ss_pred HHHHcCCCCCCCCCChHHHHHHHHHHHHHhhC
Confidence 999995 6677889999999999999999875
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=1.9e-26 Score=199.82 Aligned_cols=115 Identities=77% Similarity=1.106 Sum_probs=112.1
Q ss_pred EEEecccCccceeecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCC
Q 047849 410 LLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGM 489 (651)
Q Consensus 410 ~~~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~ 489 (651)
++.|++|+|+||++.+|.|.+|||||+++|+++++.|+|..|||+.+.|+|||||+..+.+|.+||+|.|+++||.|+|.
T Consensus 2 ~l~DV~p~slGIe~~~g~~~~iI~rnt~iP~~~t~~f~T~~dnQ~~i~i~v~qGe~~~~~~n~~lg~~~i~~ip~~p~G~ 81 (118)
T d1dkza2 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQFNLDGINPAPRGM 81 (118)
T ss_dssp CCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTC
T ss_pred EEEeecCCceeEEEcCCEEEEEEeccccCCCcceEEEEcccCCCceEEEEEeeeeeccccCceEEEEEEEcCCccCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEcCCeeEEEEEEecCCCceeeEEecCC
Q 047849 490 PQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSS 524 (651)
Q Consensus 490 ~~i~v~f~~d~~G~l~v~~~~~~t~~~~~~~i~~~ 524 (651)
++|+|+|++|.||+|+|+|.|+.||++..+.|...
T Consensus 82 ~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~ 116 (118)
T d1dkza2 82 PQIEVTFDIDADGILHVSAKDKNSGKEQKITIKAS 116 (118)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTT
T ss_pred cEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcC
Confidence 99999999999999999999999999999999765
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=7.8e-26 Score=195.25 Aligned_cols=114 Identities=49% Similarity=0.818 Sum_probs=110.9
Q ss_pred EecccCccceeecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCe
Q 047849 412 LDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQ 491 (651)
Q Consensus 412 ~d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~ 491 (651)
.||+|+|+||++.+|.|.+|||||++||+++++.|+|..|+|+.+.|+|||||+..+.+|..||+|.|.++|++|+|.++
T Consensus 1 lDV~p~slGIe~~gg~~~~iI~rnt~iP~~~t~~f~T~~d~Q~~v~i~V~qGe~~~~~~N~~lg~~~l~~ip~~p~G~~~ 80 (115)
T d1u00a2 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (115)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCccCcceeEEEcCCEEEEEEcCCCCCCceeeeeEEcCCCCceEEEEEEhhccCcccccceEeeEEEEeCcccCcccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCCeeEEEEEEecCCCceeeEEecCCC
Q 047849 492 IEVTFDIDANGIVTVSAKDKATGKEQQITIRSSG 525 (651)
Q Consensus 492 i~v~f~~d~~G~l~v~~~~~~t~~~~~~~i~~~~ 525 (651)
|+|+|++|.||+|+|+|.|+.||++.+++|..+.
T Consensus 81 I~Vtf~id~nGiL~V~A~d~~tg~~~~i~i~~~~ 114 (115)
T d1u00a2 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSY 114 (115)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCCS
T ss_pred EEEEEEccCCceEEEEEEECCCCCEeEEEEeCCC
Confidence 9999999999999999999999999999998754
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=2e-22 Score=181.64 Aligned_cols=133 Identities=32% Similarity=0.383 Sum_probs=101.4
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEee-CCc-EEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChH
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQ-KGE-LLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQ 136 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~-~~~-~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~ 136 (651)
.||||||||||+||+..+ ..++. .|+.+++.. .+. ..+|..|......+|.++ ...|+
T Consensus 2 ~iGIDlGTtns~va~~~~--~~v~~-------~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~-~~~k~---------- 61 (137)
T d1jcea1 2 DIGIDLGTANTLVFLRGK--GIVVN-------EPSVIAIDSTTGEILKVGLEAKNMIGKTPATI-KAIRP---------- 61 (137)
T ss_dssp EEEEEECSSEEEEEETTT--EEEEE-------EESCEEEETTTCCEEEESHHHHTTTTCCCTTE-EEECC----------
T ss_pred eEEEEcChhhEEEEEeCC--CEEee-------cCCcceEecCCCeEEEEehHHhhhhhhccccc-eeEEe----------
Confidence 689999999999987433 33332 366666643 334 446776665544333332 11111
Q ss_pred HHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHc
Q 047849 137 TQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIA 216 (651)
Q Consensus 137 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~A 216 (651)
..+..+.+.++..+++.+++..++...+..+.++|||||++|++.||+++++||+.|
T Consensus 62 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~Aa~~A 118 (137)
T d1jcea1 62 -----------------------MRDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEA 118 (137)
T ss_dssp -----------------------EETTEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred -----------------------ccCCccCcHHHHHHHHHHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHHHHHc
Confidence 123356788899999999999999999999999999999999999999999999999
Q ss_pred CCceEEeecchHHHhhhh
Q 047849 217 GLDVQRIINEPTAASLSY 234 (651)
Q Consensus 217 Gl~~~~li~Ep~AAAl~y 234 (651)
||++++||+||+|||+..
T Consensus 119 Gl~vv~li~EPtAAAiGa 136 (137)
T d1jcea1 119 GASKVFLIEEPMAAAIGS 136 (137)
T ss_dssp TCSEEEEEEHHHHHHHHT
T ss_pred CCCEEEEeCCHHHHHhCC
Confidence 999999999999999853
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=4.3e-20 Score=176.33 Aligned_cols=158 Identities=16% Similarity=0.180 Sum_probs=108.1
Q ss_pred eEEEEEeCCcceEEEEEEEeccccccc----CCCCccCHHHHH-H--------HHHHHHHhhhhcCC------CceeEEE
Q 047849 242 LIAVFDLGGGTFDVSILEISNGVFEDE----GIDLSKDRLALQ-R--------LREAAEKAKIELSS------TTQTDIN 302 (651)
Q Consensus 242 ~vlVvD~GggT~Dvsv~~~~~~~~~~~----~~~~~~~~~~~~-~--------L~~~~e~~K~~Ls~------~~~~~i~ 302 (651)
.+|||||||||||+|+++.++..|... +.++..+..... . ........+..... .....+.
T Consensus 8 gvlV~DiGGGT~Dvsi~~~g~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (196)
T d1jcea2 8 GNMVVDIGGGTTEVAVISLGSIVTWESIRIAGDEMDEAIVQYVRETYRVAIGERTAERVKIEIGNVFPSKENDELETTVS 87 (196)
T ss_dssp CEEEEEECSSCEEEEEEETTEEEEEEEESCSHHHHHHHHHHHHHHHHCEECCHHHHHHHHHHHCBCSCCHHHHHCEEEEE
T ss_pred ceEEEEcCCCcEEEEEEEcCCEeEEeeecCCCcccccchhhhhhhhhcccccchhHHHHHHHHhhhhhhhhccccceeee
Confidence 899999999999999999776555411 111110000000 0 00000011111110 1122233
Q ss_pred ecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC---CCCeEEEecCccCcHhHHHHHHHHhcC
Q 047849 303 LPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTK---DVDEVLLVGGMTRVPKVQEVVSEIFGK 379 (651)
Q Consensus 303 i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~---~i~~VvLvGGss~ip~i~~~l~~~f~~ 379 (651)
.....+ .......+++.++++++.+++.++...+.++++.+..... .++.|+||||+|++|.|+++|++.||.
T Consensus 88 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~IvLvGGsS~ip~v~~~l~~~fg~ 163 (196)
T d1jcea2 88 GIDLST----GLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGI 163 (196)
T ss_dssp EEETTT----TEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSS
T ss_pred eeeccC----CCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccceEEeCchhcchhHHHHHHHHHCc
Confidence 222222 2567889999999999999999999999999998765422 246799999999999999999999999
Q ss_pred CCCCcCCccchheehhHHHhhhcc
Q 047849 380 SPSKGVNPDEAVALGAAIQGGILR 403 (651)
Q Consensus 380 ~~~~~~~p~~aVA~GAa~~a~~l~ 403 (651)
++....||++|||+|||+++..+.
T Consensus 164 ~v~~~~~P~~aVA~GAai~~~~~~ 187 (196)
T d1jcea2 164 SVIRSEEPLTAVAKGAGMVLDKVN 187 (196)
T ss_dssp CEEECSSTTTHHHHHHHHGGGCHH
T ss_pred CCccCCChHHHHHHHHHHHHHCHH
Confidence 999999999999999999876543
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=2.1e-12 Score=110.15 Aligned_cols=100 Identities=22% Similarity=0.332 Sum_probs=96.6
Q ss_pred CCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHhccCCHHHHHH
Q 047849 527 LSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKS 606 (651)
Q Consensus 527 ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~ 606 (651)
||++||++|++++..++++|+.+|++.+++|+++++||.+++.|.++...++++++..|...++++.+||.+++.+.++.
T Consensus 1 LS~eEIerMi~eA~~~a~eD~~~R~~ie~~n~ae~~i~~~e~~L~e~~~~L~~~e~~~i~~~i~~l~~~l~~~d~~~I~~ 80 (112)
T d1u00a1 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQGDDVDAIEQ 80 (112)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 79999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 047849 607 KLDAANKAVSKIGQHMAGGS 626 (651)
Q Consensus 607 k~~~l~~~~~~i~~~~~~~~ 626 (651)
.++.|+..+.++.+++|+.+
T Consensus 81 ~~~~L~~~~~~~a~~~m~~~ 100 (112)
T d1u00a1 81 AIKNVDKQTQDFAARRMDQS 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988644
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=3.4e-12 Score=105.94 Aligned_cols=95 Identities=32% Similarity=0.484 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHhccCCHHHHHH
Q 047849 527 LSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKS 606 (651)
Q Consensus 527 ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~ 606 (651)
||++||++|+++++.++++|+.+|++.+++|++|+|||.+++.|.++...+++++++.|...++++.+|+.+++.+.++.
T Consensus 1 LS~~EIerMi~eAe~~a~eD~~~r~~ie~rn~ae~~i~~~e~~l~e~~~~l~~~~k~~i~~~i~~l~~~l~~~d~~~i~~ 80 (97)
T d1dkza1 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEA 80 (97)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 79999999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 047849 607 KLDAANKAVSKIGQH 621 (651)
Q Consensus 607 k~~~l~~~~~~i~~~ 621 (651)
+++.|+..+.++++.
T Consensus 81 ~~~~L~~~~~~l~e~ 95 (97)
T d1dkza1 81 KMQELAQVSQKLMEI 95 (97)
T ss_dssp HHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998888753
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.36 E-value=1e-12 Score=105.88 Aligned_cols=73 Identities=11% Similarity=0.216 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHh--hcccCCCHHHHHHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 047849 555 IRNQADTTIYSIEKSLG--EYREKIPSEVAKEIEDAVADLRKAMGAD---NVDDIKSKLDAANKAVSKIGQHMAGGSG 627 (651)
Q Consensus 555 ~~n~le~~i~~~~~~l~--~~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~k~~~l~~~~~~i~~~~~~~~~ 627 (651)
.+|+||+|||.+|+.|. ++...+++++++.|.+.|+++.+||+.+ +.++|+.|+++|++.+.||+.++|+.+|
T Consensus 2 ~~N~LEsyiy~~r~~l~d~~~~~kl~~~dk~~i~~~l~e~~~WL~~n~~a~~ee~~~k~~eLe~~~~PI~~k~y~~~g 79 (84)
T d1ud0a_ 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAG 79 (84)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSC
T ss_pred chhhHHHHHHHHHHHhcchhhccccCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 47999999999999996 4678899999999999999999999876 3889999999999999999999998665
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=99.23 E-value=2.3e-12 Score=121.50 Aligned_cols=152 Identities=17% Similarity=0.223 Sum_probs=101.1
Q ss_pred eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccCH-HHHHHHHHHHHHhhhhcCCCce---eEEEecceeccCCCC
Q 047849 242 LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKDR-LALQRLREAAEKAKIELSSTTQ---TDINLPFITADASGA 313 (651)
Q Consensus 242 ~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~~-~~~~~L~~~~e~~K~~Ls~~~~---~~i~i~~~~~~~~g~ 313 (651)
.++|+|+|+||||++++.-+.-.+. ..|.+++.+- ..+..-+..||+.|+.++.... ....++....+
T Consensus 8 Gv~vvDiG~~tt~i~i~~~G~l~~~~~i~~GG~~iT~~Ia~~l~i~~~~AE~iK~~~g~~~~~~~~~~~i~~~~~~---- 83 (191)
T d1e4ft2 8 GVVVVNLGYNFTGLIAYKNGVPIKISYVPVGMKHVIKDVSAVLDTSFEESERLIITHGNAVYNDLKEEEIQYRGLD---- 83 (191)
T ss_dssp CEEEEEECSSCEEEEEEETTEEEEEEEESCCHHHHHHHHHHHHTCCHHHHHHHHHHHCCSCCTTCCCCEEEEECTT----
T ss_pred CEEEEEeCCCcEEEEEEECCeEEEEEEEeeChHHHHHHHHHHhcccHHHHHHHHhhccccccccccchhccccccc----
Confidence 7999999999999999873332222 2222222221 2223346789999998764321 11112111111
Q ss_pred eeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCC----
Q 047849 314 KHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANI------TTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSK---- 383 (651)
Q Consensus 314 ~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~------~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~---- 383 (651)
......+++..+.+++++.++++...+.+.++.... ....+..|+|+||+|++|.|.+.+++.|+.++..
T Consensus 84 ~~~~~~~~~~~l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~IvLtGGgs~l~gl~~~l~~~l~~~Vri~~~~ 163 (191)
T d1e4ft2 84 GNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGCYA 163 (191)
T ss_dssp SSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CGGGCEEEESGGGGSTTHHHHHHHHHCSCEEECCGG
T ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhcccccCceEEEecchhhhhhHHHHHHHHHCCCeEEeCCc
Confidence 234567899999999999999999998888875321 1122456999999999999999999999865421
Q ss_pred -------------cCCccchheehhHH
Q 047849 384 -------------GVNPDEAVALGAAI 397 (651)
Q Consensus 384 -------------~~~p~~aVA~GAa~ 397 (651)
..+|..++|.|.++
T Consensus 164 ~~~~~~~~~~~~~~~~P~~ata~Gl~l 190 (191)
T d1e4ft2 164 NSDRPSIINADEVANDPSFAAAFGNVF 190 (191)
T ss_dssp GSSSCCEETCHHHHTCGGGHHHHHHHT
T ss_pred cccccccCCcHHhhcCcHHHHHHHHHh
Confidence 12577888888875
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=1.1e-12 Score=120.48 Aligned_cols=73 Identities=16% Similarity=0.143 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcC---CCCCcCCccchheehhHH
Q 047849 321 TRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGK---SPSKGVNPDEAVALGAAI 397 (651)
Q Consensus 321 tr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~---~~~~~~~p~~aVA~GAa~ 397 (651)
.++.+++++++.++++.+.+.+.+ ....+++.|+|+||+|+ .+++.|++.|+. .+....||.+|+|+|+.+
T Consensus 87 ~~~~i~~~i~~~~~~i~~~i~~~~----~~~~~~~~iil~GGGs~--ll~~~lk~~~~~~~~~v~i~~~P~~A~a~G~~~ 160 (163)
T d2zgya2 87 KISIVTEAMNEALRKLEQRVLNTL----NEFSGYTHVMVIGGGAE--LICDAVKKHTQIRDERFFKTNNSQYDLVNGMYL 160 (163)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH----TTCCCCCEEEEESTTHH--HHHHHHHHTSCCCGGGEECCSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----ccccccceEEEECchHH--HHHHHHHHHhCCCCCCeEECCCcHhHHHHHHHH
Confidence 334444444444444444444443 34568899999999995 599999999974 356778999999999998
Q ss_pred Hh
Q 047849 398 QG 399 (651)
Q Consensus 398 ~a 399 (651)
+|
T Consensus 161 ~g 162 (163)
T d2zgya2 161 IG 162 (163)
T ss_dssp HH
T ss_pred hc
Confidence 76
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.01 E-value=4.5e-11 Score=109.22 Aligned_cols=154 Identities=17% Similarity=0.105 Sum_probs=87.2
Q ss_pred CCCeEEEEEeCCcceEEEEEEEecccccccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEE
Q 047849 239 KEGLIAVFDLGGGTFDVSILEISNGVFEDEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNI 318 (651)
Q Consensus 239 ~~~~vlVvD~GggT~Dvsv~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~ 318 (651)
+++++||+|+||||||++++...+..+... .....+.-.......-++..|..++.......... +... ........
T Consensus 4 ~~g~~lviDIG~gTtDi~v~~~~~~~~~~~-~~~~~~~g~~~i~~~i~~~i~~~~~~~~~~~~~~~-~~~~-~~~~~g~~ 80 (161)
T d2fsja1 4 QPGYGVVIDVGSRTTDVLTINLMDMEPVVE-LSFSLQIGVGDAISALSRKIAKETGFVVPFDLAQE-ALSH-PVMFRQKQ 80 (161)
T ss_dssp CSSEEEEEEECSSCEEEEEEETTTTEECGG-GCEEESCCHHHHHHHHHHHHHHHHCCCCCHHHHHH-HTTS-CEEETTEE
T ss_pred CCCcEEEEEcCcCeEEEEEEECCCeEEEEE-EeccHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHhc-cccccccc
Confidence 445899999999999999998655443311 01111100111111223445555543321111000 0000 00000011
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCC--CCcCCccchheehhH
Q 047849 319 TLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSP--SKGVNPDEAVALGAA 396 (651)
Q Consensus 319 ~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~--~~~~~p~~aVA~GAa 396 (651)
.-.++.+.+.++++++.+...+...+.. ....++.|+|+||+|.+ +++.+++.|+... ..+.||..|+|.|--
T Consensus 81 ~~~~~~i~~~~~~~~~~i~~~i~~~~~~---~~~~i~~iil~GGga~l--l~~~l~~~~~~~~~~~~~~~p~~ana~G~~ 155 (161)
T d2fsja1 81 VGGPEVSGPILEDLANRIIENIRLNLRG---EVDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALGYR 155 (161)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHHHHHHGG---GGGGEEEEEEESTTHHH--HGGGGGGGSTTCBCCCCTTTTTTHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhh---ccccccEEEEECCHHHH--HHHHHHHHccCCeeecCCCCccchHHHHHH
Confidence 1224456666667777776666666553 33568999999999987 7889999997543 345799999999987
Q ss_pred HHhh
Q 047849 397 IQGG 400 (651)
Q Consensus 397 ~~a~ 400 (651)
..|-
T Consensus 156 ~~~e 159 (161)
T d2fsja1 156 DAAE 159 (161)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6653
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=98.58 E-value=9.2e-08 Score=93.07 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 327 TLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 327 ~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
+++...++.+...+...+... .+.+.|++.||.++.+.+++.+++.++.++..+.+|.++.|+|||++|..
T Consensus 185 ~i~~~~~~~~~~~~~~~~~~~----~~~~~Iv~gGGv~~~~~~~~~l~~~l~~~i~~~~~~~~agaiGAA~lA~~ 255 (259)
T d1huxa_ 185 DIIAGIHRSVASRVIGLANRV----GIVKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYK 255 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----CCCSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc----cCCCcEEEEccccccHHHHHHHHHHHCCCEEcCCCccHHHHHHHHHHHHH
Confidence 344445555555554444432 34578999999999999999999999999999999999999999999875
|
| >d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: Diol dehydratase-reactivating factor large subunit DdrA species: Klebsiella oxytoca [TaxId: 571]
Probab=97.04 E-value=0.00071 Score=58.75 Aligned_cols=58 Identities=24% Similarity=0.355 Sum_probs=42.4
Q ss_pred HHHHHHc--CCCCCCCCeEEEecCccCcHhHHHHHHHHhcC--------CCCCcCCccchheehhHHH
Q 047849 341 KNCLKDA--NITTKDVDEVLLVGGMTRVPKVQEVVSEIFGK--------SPSKGVNPDEAVALGAAIQ 398 (651)
Q Consensus 341 ~~~l~~a--~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~--------~~~~~~~p~~aVA~GAa~~ 398 (651)
.++|+.- +-+..+|..|+|||||+.=--|-+++.+.+.. ++.-..-|..|||.|.++.
T Consensus 131 ~RaL~~vsP~gnir~i~fVVlvGGsalDfEip~~vtdaLs~y~iVaGrgNIrG~eGPRnAVAtGLvl~ 198 (203)
T d2d0oa3 131 LRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILS 198 (203)
T ss_dssp HHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCCCCeEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCchHHHHHHHHHH
Confidence 4455542 23456899999999999988888888888732 2233457899999999874
|
| >d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.80 E-value=0.001 Score=57.85 Aligned_cols=49 Identities=24% Similarity=0.399 Sum_probs=37.2
Q ss_pred CCCCCCeEEEecCccCcHhHHHHHHHHhcC--------CCCCcCCccchheehhHHH
Q 047849 350 TTKDVDEVLLVGGMTRVPKVQEVVSEIFGK--------SPSKGVNPDEAVALGAAIQ 398 (651)
Q Consensus 350 ~~~~i~~VvLvGGss~ip~i~~~l~~~f~~--------~~~~~~~p~~aVA~GAa~~ 398 (651)
+..+|..|+|||||+.=--|-+++.+.+.. ++.-..-|..|||.|.++.
T Consensus 142 nir~i~fvVlvGGsalDfEip~~vtdaLs~y~vVaGRgNIrG~eGPRnAVAtGLvls 198 (202)
T d1nbwa3 142 SIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLA 198 (202)
T ss_dssp CSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHH
T ss_pred CcCCCceEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCcHHHHHHHHhhh
Confidence 346899999999999977777777777631 2333467899999999874
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.54 E-value=0.0041 Score=59.52 Aligned_cols=88 Identities=13% Similarity=0.170 Sum_probs=56.1
Q ss_pred eeEEEEecHHHHH---HHHHHH------HHHHHHHHHHHHHHcCCCCCC--CCeEEEecCccCcHhHHHHHHHHhc----
Q 047849 314 KHLNITLTRSKFE---TLVNNL------IERTRAPCKNCLKDANITTKD--VDEVLLVGGMTRVPKVQEVVSEIFG---- 378 (651)
Q Consensus 314 ~~~~~~itr~~fe---~l~~~~------~~~i~~~i~~~l~~a~~~~~~--i~~VvLvGGss~ip~i~~~l~~~f~---- 378 (651)
....+.+..+.|. -++.|- ...+.++|.+++..+..+... ...|+|+||+|.+|.+.+.|.+.+.
T Consensus 105 ~~~~i~~~~er~~~~E~lF~p~~~~~~~~~~l~~~i~~si~~~~~d~r~~L~~nIvl~GG~s~~~Gf~eRL~~EL~~~~~ 184 (258)
T d1k8ka2 105 KEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVD 184 (258)
T ss_dssp CEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHH
T ss_pred CCeEEecCccceeccHHHhhhhhhcccccccchHHHHHHHHhccHHhhHHHHhCEEEecCcccCCCHHHHHHHHHHhhcc
Confidence 3456677766652 122221 123667777888776543322 4679999999999999998865552
Q ss_pred --------------------CCCCCcCCccchheehhHHHhhh
Q 047849 379 --------------------KSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 379 --------------------~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
..+..+.++..++=+||+++|..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~i~v~~~~~r~~s~W~Ggsila~l 227 (258)
T d1k8ka2 185 ARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAST 227 (258)
T ss_dssp HHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTS
T ss_pred hhhhhhhhccccccCCCCceeeEecCCCCCceehHHHHHHHcC
Confidence 01122345667888899998764
|
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=95.81 E-value=0.0038 Score=58.89 Aligned_cols=51 Identities=25% Similarity=0.389 Sum_probs=44.0
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.++.|.+.||.++.+.+.+.+.+.++.++.+..++ ++.++|||+.|+.-.+
T Consensus 147 ~~~~i~~~GG~s~s~~~~Qi~Advlg~~v~~~~~~-e~~alGaA~la~~~~G 197 (235)
T d1r59o2 147 DIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANL-ETTALGAAYLAGLAVG 197 (235)
T ss_dssp CCSEEEEEESTTSCHHHHHHHHHHHSSEEEEESCC-CTTTHHHHHHHHHHHT
T ss_pred CCcEEEecCcchhCHHHHhhhhhccceeeeecccc-chHHHHHHHHHHHHcC
Confidence 56799999999999999999999999987776555 5889999999987554
|
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.68 E-value=0.03 Score=51.97 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCCC--CCCCCeEEEecCccCcHhHHHHHHHHhc--------CCCCCcCCccchheehhHHHhhh
Q 047849 336 TRAPCKNCLKDANIT--TKDVDEVLLVGGMTRVPKVQEVVSEIFG--------KSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 336 i~~~i~~~l~~a~~~--~~~i~~VvLvGGss~ip~i~~~l~~~f~--------~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
+.++|.+.|..+..+ ..-...|+|+||+|.+|.+.+.|.+.+. ..+..+.++..++=+|++++|..
T Consensus 128 l~~~i~~sI~~~~~d~r~~l~~nIvl~GG~s~~~G~~~RL~~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl 203 (225)
T d2fxua2 128 IHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 203 (225)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHC
T ss_pred hhHHHHHHhhcCCcchhhhhhcCEEEeCCcccCCchhHHHHhHHHHhhccccceEEecCCCCCeeEEeCHhhhhcC
Confidence 555555665553211 1123689999999999999999997652 12234457778888999999874
|
| >d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.64 E-value=0.03 Score=47.73 Aligned_cols=64 Identities=8% Similarity=-0.030 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHhhCCC--CCeEEEEecCCCCHHHHHHHHHHH-HHcCCceEEeecchHHHhhhhc
Q 047849 169 QIGAFVLTKMKETAESYLGKS--VSKAVITVPAYFNDAQRQATKDAG-RIAGLDVQRIINEPTAASLSYG 235 (651)
Q Consensus 169 ev~a~~L~~l~~~a~~~~~~~--~~~~VITVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAAl~y~ 235 (651)
+....++.++.. ..++.. -..+++|-|...+...|+.+.+.+ +..+++.+.+...|..+++++|
T Consensus 74 d~~e~~~~~~~~---~~l~~~~~~~pvlltE~~~~~~~~r~~~~EilFE~~~vp~~~~~~~~~ls~ys~G 140 (140)
T d2fxua1 74 DDMEKIWHHTFY---NELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG 140 (140)
T ss_dssp HHHHHHHHHHHH---TTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTT
T ss_pred HHHHHHHHHhhh---hhcccCCCCCcceeeccCCCCHHHHHHHHHHhhccCCCCEEEEEhhHHhHhhcCC
Confidence 344445555443 233333 235999999999999999887764 6669999999999999987764
|
| >d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.28 E-value=0.042 Score=47.91 Aligned_cols=48 Identities=13% Similarity=-0.042 Sum_probs=40.5
Q ss_pred CCeEEEEecCCCCHHHHHHHHHH-HHHcCCceEEeecchHHHhhhhccc
Q 047849 190 VSKAVITVPAYFNDAQRQATKDA-GRIAGLDVQRIINEPTAASLSYGMN 237 (651)
Q Consensus 190 ~~~~VITVPa~f~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAAl~y~~~ 237 (651)
...+++|-|...+..+|+.+.+. .+..+++-+.+...|..++++++..
T Consensus 105 ~~pvlltEp~~~~~~~Re~~~EilFE~~~vpa~~~~~~~~Lslya~g~~ 153 (158)
T d1k8ka1 105 DHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTS 153 (158)
T ss_dssp GCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGS
T ss_pred CCceeeeecCCCCHHHHHHHHHHHhhhcCCCEEEEEchhhhhheeCCCC
Confidence 34699999999999999987665 5667999999999999999887754
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.11 E-value=0.02 Score=51.72 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=40.6
Q ss_pred EEEecHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCCC--CCCCeEEEecCccCcHhHHHHHHHHh
Q 047849 317 NITLTRSKFETLVNNLIE---------RTRAPCKNCLKDANITT--KDVDEVLLVGGMTRVPKVQEVVSEIF 377 (651)
Q Consensus 317 ~~~itr~~fe~l~~~~~~---------~i~~~i~~~l~~a~~~~--~~i~~VvLvGGss~ip~i~~~l~~~f 377 (651)
.+.+..+.|. ..+.+++ .+.++|.+++..+..+. .-...|+|+||+|.+|.+.+.|...+
T Consensus 98 ~i~i~~er~~-~~E~lF~p~~~~~~~~~l~~~i~~si~~c~~d~r~~L~~NIvl~GG~Sl~pGf~~RL~~EL 168 (190)
T d1k8kb1 98 IIKVGGERFE-APEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLEREL 168 (190)
T ss_dssp EEEECTHHHH-TGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHH
T ss_pred EEEEChhhcc-ccccccChhhcCcccccHHHHHHHHHHhCCHhHHHHHHcCEEEECcccCCCCHHHHHHHHH
Confidence 4666666553 2232332 26667777777764432 12478999999999999999998766
|
| >d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=94.87 E-value=0.039 Score=49.82 Aligned_cols=31 Identities=0% Similarity=-0.235 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHcCCceEEeecchHHHhhhh
Q 047849 204 AQRQATKDAGRIAGLDVQRIINEPTAASLSY 234 (651)
Q Consensus 204 ~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y 234 (651)
...+.+.++.+.+|+++..++.+|.|+|.+.
T Consensus 162 ~~i~nl~~~~~~~~l~v~~~~~~~~asa~a~ 192 (193)
T d1e4ft1 162 KVYEMFYNFLQDTVKSPFQLKSSLVSTAEGV 192 (193)
T ss_dssp HHHHHHHHHHHHHSCSCEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchhEEEhHHhhhhcc
Confidence 4478899999999999999999999999764
|
| >d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Probable N-acetylglucosamine kinase CV2896 species: Chromobacterium violaceum [TaxId: 536]
Probab=94.56 E-value=0.13 Score=41.67 Aligned_cols=65 Identities=11% Similarity=0.094 Sum_probs=39.8
Q ss_pred ChhhHHHHHHHHHHHHHHHhhCCC---CC--eEEEEecCCCCHHHHHHHHHHHHHcCCceEEeecchHHHhhh
Q 047849 166 SPSQIGAFVLTKMKETAESYLGKS---VS--KAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLS 233 (651)
Q Consensus 166 s~eev~a~~L~~l~~~a~~~~~~~---~~--~~VITVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~ 233 (651)
.++++...+.+.+.+..++. +.. +. .+.+.+|.......+..+.... -.+..+.+.|+-.||++.
T Consensus 41 ~~~~~~~~i~~~i~~~~~~a-g~~~~~~~~~~~~~g~aG~~~~~~~~~l~~~~--~~~~~v~v~nDa~~A~~g 110 (114)
T d1zc6a1 41 GIAKSWQAVLSTLEAAFQQA-GLPAAPASACAIGLGLSGVHNRQWAGEFESQA--PGFARLSLATDGYTTLLG 110 (114)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-TCCCCCGGGEEEEEEESCCCTTSHHHHHHHTC--CCCSEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHc-CCChhhhceeEEEEEecCCCcHHHHHHHHHhC--CCCCeEEEECHHHHHHHH
Confidence 35556555555555554432 222 22 3667888877776666665432 234578899999999875
|
| >d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=93.89 E-value=0.023 Score=49.86 Aligned_cols=42 Identities=19% Similarity=0.050 Sum_probs=31.0
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHc--------C------CceEEeecchHHHhhh
Q 047849 192 KAVITVPAYFNDAQRQATKDAGRIA--------G------LDVQRIINEPTAASLS 233 (651)
Q Consensus 192 ~~VITVPa~f~~~qr~~l~~Aa~~A--------G------l~~~~li~Ep~AAAl~ 233 (651)
.+|+..|..+...+++++++....- | +..+.+++||.+|.++
T Consensus 103 ~lv~GLP~~~~~~~ke~~~~~l~~~~~~~~~~~g~~~~i~I~~v~V~pQg~ga~~~ 158 (164)
T d2fsja2 103 VIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALY 158 (164)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHHHhcCCCceEEeeCCeEEEEEEeEEEEecCCHHHHHH
Confidence 3688899998888899998876421 1 1346678999998773
|
| >d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Type II pantothenate kinase, CoaW species: Staphylococcus aureus [TaxId: 1280]
Probab=92.07 E-value=0.12 Score=48.09 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=38.4
Q ss_pred CCCeEEEecCc-cCcHhHHHHHHHHhc---CCCCCcCCccchheehhHHHh
Q 047849 353 DVDEVLLVGGM-TRVPKVQEVVSEIFG---KSPSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 353 ~i~~VvLvGGs-s~ip~i~~~l~~~f~---~~~~~~~~p~~aVA~GAa~~a 399 (651)
++..|++.||. +..|.+++.+++++. .++..+.+++.+-|+||++++
T Consensus 216 ~~~~Iv~~GG~~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~aGaiGA~~L~ 266 (267)
T d2ewsa1 216 KTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 266 (267)
T ss_dssp TCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred CCCCEEEECChhhcCHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHhc
Confidence 45689999985 679999999999984 345567788999999999875
|
| >d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=89.45 E-value=0.27 Score=42.38 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=16.2
Q ss_pred EEEEEcCCceEEEEEEeC
Q 047849 59 IIGIDLGTTNSCVALMEG 76 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~ 76 (651)
+||||.|.+++++++..+
T Consensus 2 ~I~iD~Gy~nvK~a~~~~ 19 (157)
T d2zgya1 2 LVFIDDGSTNIKLQWQES 19 (157)
T ss_dssp EEEEEECSSEEEEEEECS
T ss_pred EEEEecCCCcEEEEEecC
Confidence 799999999999997764
|
| >d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glucokinase domain: Glucokinase Glk species: Escherichia coli [TaxId: 562]
Probab=89.10 E-value=1.5 Score=41.61 Aligned_cols=21 Identities=29% Similarity=0.233 Sum_probs=18.2
Q ss_pred cEEEEEcCCceEEEEEEeCCc
Q 047849 58 DIIGIDLGTTNSCVALMEGKN 78 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~ 78 (651)
+.++||+|.|++++++++...
T Consensus 2 y~L~~DIGGT~ir~glvd~~~ 22 (319)
T d1sz2a1 2 YALVGDVGGTNARLALCDIAS 22 (319)
T ss_dssp EEEEEEEETTEEEEEEEETTT
T ss_pred EEEEEEEChhheeeEEEECCC
Confidence 579999999999999997543
|
| >d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: N-acetylglucosamine kinase, NAGK species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.67 E-value=1.6 Score=35.10 Aligned_cols=45 Identities=7% Similarity=-0.026 Sum_probs=34.2
Q ss_pred CCCCeEEEEecCCCCHHHHHHHHHHHHHc--CC-ceEEeecchHHHhh
Q 047849 188 KSVSKAVITVPAYFNDAQRQATKDAGRIA--GL-DVQRIINEPTAASL 232 (651)
Q Consensus 188 ~~~~~~VITVPa~f~~~qr~~l~~Aa~~A--Gl-~~~~li~Ep~AAAl 232 (651)
.++..+++.++..=++..++.+.++.+.. ++ ..+.+.++-.||..
T Consensus 66 ~~i~~i~~GlAG~~~~~~~~~l~~~l~~~~~~~~~~v~v~nDa~~Al~ 113 (117)
T d2ch5a2 66 VPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIA 113 (117)
T ss_dssp CCBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHH
T ss_pred ccccEEEEEeeccCcchhHHHHHHHHHHHCCCCCceEEEeccHHHHHh
Confidence 35678999999987888888898888665 55 35677787776654
|
| >d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Aquifex aeolicus [TaxId: 63363]
Probab=81.46 E-value=0.43 Score=42.06 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=17.3
Q ss_pred CeEEEEEeCCcceEEEEEE
Q 047849 241 GLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 241 ~~vlVvD~GggT~Dvsv~~ 259 (651)
+++||+|+|||+|.+++++
T Consensus 3 ~~~lviDIGGGStEli~~~ 21 (180)
T d1t6ca2 3 GEVCVVDQGGGSTEYVFGK 21 (180)
T ss_dssp SEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEEeCCChHhhEEee
Confidence 4789999999999999886
|
| >d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Inorganic polyphosphate/ATP-glucomannokinase PPGMK species: Arthrobacter sp. KM [TaxId: 184230]
Probab=81.07 E-value=0.76 Score=37.53 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.3
Q ss_pred CcEEEEEcCCceEEEEEEeCC
Q 047849 57 NDIIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 57 ~~vvGID~GTt~s~va~~~~~ 77 (651)
..+||||+|.|++.+++++..
T Consensus 2 ~~vlGiDiGgT~i~~~l~d~~ 22 (129)
T d1woqa1 2 APLIGIDIGGTGIKGGIVDLK 22 (129)
T ss_dssp CCEEEEEECSSEEEEEEEETT
T ss_pred CCEEEEEECcceEEEEEEECC
Confidence 469999999999999999753
|
| >d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Escherichia coli [TaxId: 562]
Probab=80.15 E-value=0.53 Score=41.12 Aligned_cols=19 Identities=42% Similarity=0.681 Sum_probs=16.8
Q ss_pred CeEEEEEeCCcceEEEEEE
Q 047849 241 GLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 241 ~~vlVvD~GggT~Dvsv~~ 259 (651)
++.||+|+|||++.+++++
T Consensus 2 gr~Lv~DIGGGStEl~~~~ 20 (177)
T d1u6za3 2 GRKLVIDIGGGSTELVIGE 20 (177)
T ss_dssp SCEEEEEECSSCEEEEEEE
T ss_pred CCEEEEEeCCChhheEEEE
Confidence 3689999999999999875
|