Citrus Sinensis ID: 047950

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
Protein Sequence
MQKSTFHTTTVPFFSMPDTFQTPETFRFFTETQSLCGPIFNSNLSFPSLPALNYLNPPHYFPYLTDVSVDSSLSDSETKTESPVFLSENKKKAVTETETDAAAPPVLDGIAAVVGLNVLFGTKTNPTKKTETPDAVEENIGSPRKNDNNTIPVQKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSVLPLIATPCLSPSSSGEVKKAKGKVINSNSSGRRNKCSVVTSMAHLFSNNAISFNNNGFDHHQAKRNAKAKDTNTLELDLKLGVGLAAKRNTAASAPSMAV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccEEEcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEccccccccccccccccHHccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHccccEEEccccccccccccccccccccHHHHHHHHcccccccccccccccccccccHHHccccccccccccccccccHHccccccccccEcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mqkstfhtttvpffsmpdtfqtpetfrfftetqslcgpifnsnlsfpslpalnylnpphyfpyltdvsvdsslsdsetktespvflsenkkkavtetetdaaappvlDGIAAVVGLNvlfgtktnptkktetpdaveenigsprkndnntipvqknyrgvrkrpwgrwSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRgskartnfeipsvlpliatpclspsssgevkkakgkvinsnssgrrnkcSVVTSMAHLFSnnaisfnnngfdhhqakrnakakdtntLELDLKLGVGLaakrntaasapsmav
Flexible Loop (DISEMBL)
mqkstfhtttvpffsmpdtFQTPETFRFFTETQSLCGPIFNSNLSFPSLPALNYLNPPHYFPYLTDVSVDSSLSDSetktespvflsenkkKAVTetetdaaappvlDGIAAVVGLNVLFGtktnptkktetpdaveenigsprkndnntipvqknyrgvrkrpwgrwSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRlrgskartnfeipsvlpliatpclspsssgevkkakgkvinsnssgrrnKCSVVTSMAHLFSNNAISFNNNGFDHHQAKRNAKAKDTNTLELDLKLGvglaakrntaasapsmav
Low Complexity Region (SEG)
MQKSTFHTTTVPFFSMPDTFQTPETFRFFTETQSLCGPIFNSNLSFPSLPALNYLNPPHYFPYLTdvsvdsslsdsETKTESPVFLSENKKKAVTETETDAAAPPVLDGIAAVVGLNVLFGtktnptkktetpDAVEENIGSPRKNDNNTIPVQKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTaeeaaraydaaarrlrGSKARTNFEIPSVLPLIATPCLSPSSSGEVKKAKGKVINSNSSGRRNKCSVVTSMAHLFSNNAISFNNNGFDHHQAKRNAKAKDTNTLELDLKLGVGLAAKRNTAASAPSMAV
Disordered region (IsUnstruct)
*******TTTVPFFSMPDTFQTPETFRFFTETQSLCGPIFNSNLSFPSLPALNYLNPPHYFPYLTDVS************************************PVLDGIAAVVGLNVLFGT********************************KNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRG*KARTNFEIPSVLPLIATPC****************************SVVTSMAHLFSNNAISFNN*********************LDLKLGVG****************
Disordered Region (DISOPRED)
*************************************************************PYLTDVSVDSSLSD************************************************************************************VRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEI*******************************************************************************************************
Disordered Region (DISEMBL)
********TTVPFFSMPDTFQTPETFRFFTETQSLCGPIFNSNLSFPSLPALNYLNPPHYFPYLTDVSV*****************************TDAAAPPVLDGIAAVVGLNVLFGTKTNP**********EENIGSPRKNDNNTIPVQKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSVLPLIATPCLS***********************NKCSVVTSMAHLFSNNAISFNNNGFDHH********KDTNTLELDLKLGVGLAAK************
Disordered Region (DISPRO)
*****FHTTTVPFFSMPDTFQTPETFRFFTETQSLCGPIFNSNLSFPSLPALNYLNPPHY*********************************************************************************************QKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIP***************************************************A**FNNNGFDHHQAKRNAKAKDTNTLELDLKLGVGL***************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQKSTFHTTTVPFFSMPDTFQTPETFRFFTETQSLCGPIFNSNLSFPSLPALNYLNPPHYFPYLTDVSVDSSLSDSETKTESPVFLSENKKKAVTETETDAAAPPVLDGIAAVVGLNVLFGTKTNPTKKTETPDAVEENIGSPRKNDNNTIPVQKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSVLPLIATPCLSPSSSGEVKKAKGKVINSNSSGRRNKCSVVTSMAHLFSNNAISFNNNGFDHHQAKRNAKAKDTNTLELDLKLGVGLAAKRNTAASAPSMAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	317	2.2.26 [Sep-21-2011]
Q9M8M5	256	Ethylene-responsive trans	yes	no	0.517	0.640	0.433	3e-25
Q9LW49	227	Ethylene-responsive trans	N/A	no	0.192	0.268	0.721	1e-19
Q9SAD4	328	Ethylene-responsive trans	no	no	0.201	0.195	0.656	2e-19
Q9FE67	200	Ethylene-responsive trans	no	no	0.211	0.335	0.671	2e-19
Q9FYK5	306	Ethylene-responsive trans	no	no	0.186	0.192	0.728	2e-19
O80340	222	Ethylene-responsive trans	no	no	0.195	0.279	0.718	3e-19
Q40477	225	Ethylene-responsive trans	N/A	no	0.192	0.271	0.704	8e-19
Q9FK12	354	Ethylene-responsive trans	no	no	0.309	0.276	0.495	1e-18
Q9M644	211	Ethylene-responsive trans	no	no	0.236	0.355	0.576	2e-18
Q8H0T5	211	Ethylene-responsive trans	no	no	0.223	0.336	0.523	2e-18

>sp|Q9M8M5|ERF84_ARATH Ethylene-responsive transcription factor ERF084 OS=Arabidopsis thaliana GN=ERF084 PE=2 SV=1

 Score =  115 bits (289), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/210 (43%), Positives = 110/210 (52%), Gaps = 46/210 (21%)

Query: 10  TVPFFSMPDTFQTPETFRFFTETQSLCGPIFNSNLSFPSLPALNYLNPPHYFPYLTDVSV 69
           +VP  SM +T Q  ET+    E+  +C P+F +N +   + +L   NP            
Sbjct: 15  SVPLSSMHETSQNSETYGLSKESPLVCMPLFETNTTSFDISSLFSFNP------------ 62

Query: 70  DSSLSDSETKTESPVFLSENKKKAVTETETDAAAPPVLDGIAAVVGLNVLFGTKTNPTKK 129
                    K E      EN  + +             D IAAVVG NVLFG K   +  
Sbjct: 63  ---------KPEP-----ENTHRVMD------------DSIAAVVGENVLFGDKNKVSDH 96

Query: 130 TETPDAVEENIGSPRKNDNNTIPVQKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTA 189
                 V+     P+K           + GVRKRPWGRWSAEIRDRIGRCRHWLGTFDTA
Sbjct: 97  LTKEGGVKRGRKMPQKTGG--------FMGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTA 148

Query: 190 EEAARAYDAAARRLRGSKARTNFEIPSVLP 219
           EEAARAYDAAARRLRG+KA+TNF IP + P
Sbjct: 149 EEAARAYDAAARRLRGTKAKTNFVIPPLFP 178

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW49|ERF4_NICSY Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/61 (72%), Positives = 51/61 (83%)

Query: 156 NYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIP 215
           +YRGVRKRPWGR++AEIRD   + R WLGTFDTAEEAA+AYD AAR  RG KA+TNF +P
Sbjct: 26  HYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPLP 85

Query: 216 S 216
           S
Sbjct: 86  S 86

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs.

Nicotiana sylvestris (taxid: 4096)

>sp|Q9SAD4|ESR1_ARATH Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 53/64 (82%)

Query: 157 YRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPS 216
           YRGVR+RPWGR++AEIRD + + R WLGTFDTAE+AA AYD+AAR  RG+KARTNF  P+
Sbjct: 57  YRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNFTYPT 116

Query: 217 VLPL 220
            + +
Sbjct: 117 AVIM 120

Regulates gene expression patterns in meristems and thus modulates organ development. Required for correct embryon patterning and cotyledon organogenesis. Modulates auxin signaling pathway in early embryos. Involved in the cytokinin signaling pathway that promotes shoot regeneration. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FE67|ERF80_ARATH Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/67 (67%), Positives = 54/67 (80%)

Query: 150 TIPVQKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKAR 209
           T+  + ++RGVRKRPWGR++AEIRD   + R WLGTFDTAEEAARAYD AAR  RGSKA+
Sbjct: 26  TMRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAK 85

Query: 210 TNFEIPS 216
           TNF +P 
Sbjct: 86  TNFPLPG 92

Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYK5|ESR2_ARATH Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 49/59 (83%)

Query: 157 YRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIP 215
           YRGVR+RPWGR++AEIRD + + R WLGTFDTAEEAA AYD AAR +RG KARTNF  P
Sbjct: 58  YRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYP 116

Required for correct embryo patterning and cotyledon organogenesis. May regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Involved in the cytokinin signaling pathway that promotes shoot regeneration, probably through transcriptional activation of target genes such as CUC1. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80340|ERF78_ARATH Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/64 (71%), Positives = 52/64 (81%), Gaps = 2/64 (3%)

Query: 157 YRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPS 216
           YRGVRKRPWGR++AEIRD   + R WLGTFDTAEEAARAYD AAR  RG+KA+TNF  P+
Sbjct: 25  YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNF--PT 82

Query: 217 VLPL 220
            L L
Sbjct: 83  FLEL 86

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40477|ERF4_TOBAC Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 43/61 (70%), Positives = 50/61 (81%)

Query: 156 NYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIP 215
           +YRGVRKRPWGR++AEIRD   + R WLGTFDTAEEAA+AYD AAR  RG KA+TNF  P
Sbjct: 26  HYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPSP 85

Query: 216 S 216
           +
Sbjct: 86  T 86

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs.

Nicotiana tabacum (taxid: 4097)

>sp|Q9FK12|CRF3_ARATH Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=1 SV=1

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/101 (49%), Positives = 62/101 (61%), Gaps = 3/101 (2%)

Query: 117 NVLFGTKTNPTKKTETPDAVEENIGSPRKNDNNTIPVQ---KNYRGVRKRPWGRWSAEIR 173
           NV+ G      K+  +     ++  S R+  NN + V    K +RGVR+RPWG+W+AEIR
Sbjct: 82  NVVTGVSMKDRKRLSSSSDETQSPASSRQRPNNKVSVSGQIKKFRGVRQRPWGKWAAEIR 141

Query: 174 DRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEI 214
           D   R R WLGTF+TAEEAA  YD AA RLRG  A TNF I
Sbjct: 142 DPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSI 182

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M644|LEP_ARATH Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 56/78 (71%), Gaps = 3/78 (3%)

Query: 142 SPRKNDNNTIPVQKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAAR 201
           S +K D+    V   + GVR+RPWGR++AEIRD   + RHWLGTFDTAEEAA AYD AAR
Sbjct: 8   SKKKQDDQ---VGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAAR 64

Query: 202 RLRGSKARTNFEIPSVLP 219
            +RG++ARTNF    + P
Sbjct: 65  SMRGTRARTNFVYSDMPP 82

Cell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H0T5|ERF73_ARATH Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 57/86 (66%), Gaps = 15/86 (17%)

Query: 157 YRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPS 216
           Y+G+R+RPWGRW+AEIRD I   R WLGTF+TAEEAARAYD  A+R+RG+KA+ NF    
Sbjct: 25  YKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNF---- 80

Query: 217 VLPLIATPCLSPSSSGEVKKAKGKVI 242
                      P+ S   +KAK K +
Sbjct: 81  -----------PNESSGKRKAKAKTV 95

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
224140803	281	AP2/ERF domain-containing transcription	0.798	0.900	0.445	2e-50
224060401	300	AP2/ERF domain-containing transcription	0.851	0.9	0.489	6e-48
255579198	287	DNA binding protein, putative [Ricinus c	0.798	0.881	0.467	3e-47
297743600	275	unnamed protein product [Vitis vinifera]	0.776	0.894	0.480	5e-42
225443077	283	PREDICTED: ethylene-responsive transcrip	0.804	0.901	0.468	5e-41
379056270	257	ethylene response factor #231 [Nicotiana	0.574	0.708	0.497	5e-39
357468047	183	Ethylene-responsive transcription factor	0.473	0.819	0.627	3e-31
449491193	183	PREDICTED: ethylene-responsive transcrip	0.479	0.830	0.530	2e-29
297839879	258	ethylene-responsive element-binding fami	0.750	0.922	0.407	2e-25
168047796	56	predicted protein [Physcomitrella patens	0.176	1.0	0.910	2e-23

>gi|224140803|ref|XP_002323768.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222866770|gb|EEF03901.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 142/319 (44%), Positives = 168/319 (52%), Gaps = 66/319 (20%)

Query: 26  FRFFTETQSLCGPIFNSNLSFPSLPALNYLNPPHYFPYLTDVSVDSSLSDSETKTESPVF 85
           FR  TE  S  G       SF S    N+ NP  Y P   D+S   SLSDS  K+     
Sbjct: 2   FRLLTENPSFRGSFLEPQNSFSSPLTFNHYNPTSYPPVSPDISASVSLSDSFKKSPD--- 58

Query: 86  LSENKKKAVTETETDAAAPPVLDGIAAVVGLNVLFGTKTNPTKKTETP--DAVEENIGSP 143
                             PPVLDGI A+VG  VLFGT  N TK +E     ++ +  GS 
Sbjct: 59  -----------------TPPVLDGIGAIVGQQVLFGT--NDTKNSEVSGLSSISQRTGSK 99

Query: 144 ---------RKNDNNTIPVQKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAAR 194
                    R + ++ +P++K YRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAAR
Sbjct: 100 TSKQESGAVRSSVSDGVPIRKTYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAAR 159

Query: 195 AYDAAARRLRGSKARTNFEI------PSVLPLIATPCLSPSSSGEVKKAKGKVINSNSS- 247
           AYD+AARRLRG+KARTNFEI       S          S S S   +  K   +N++SS 
Sbjct: 160 AYDSAARRLRGAKARTNFEIPPVLPPVSSSSSSPPSACSGSISNNAEARKRTNVNNHSSK 219

Query: 248 -----GRRNKCSVVTSMAHLFSNNAISFNNNGFDHHQAKRNAKAKDTNTLELDLKLGVGL 302
                GR  KC+VVTS+AHLFS+    F   G                 +ELDLKLG+G 
Sbjct: 220 MVGNGGR--KCAVVTSVAHLFSD----FEGKG-----------TSAGGNVELDLKLGMGS 262

Query: 303 AAKRN---TAASA-PSMAV 317
              R    +AASA PSM V
Sbjct: 263 DGHRGGNKSAASAPPSMLV 281

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060401|ref|XP_002300181.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222847439|gb|EEE84986.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  197 bits (501), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 161/329 (48%), Positives = 189/329 (57%), Gaps = 59/329 (17%)

Query: 11  VPFFSMPDTFQTPETFRFFTETQSLCGPIFNSNLSFPSLPALNYLNPPHYFPYLTDVSVD 70
           +PFF  P+T+   E FR  TE  S CG +     SF S    N+ +P  YFP  TD+S  
Sbjct: 9   IPFFPKPETYHLSEMFRLLTENSSFCGSLLQPQNSFSSPFTSNHYDPSAYFPVSTDISAI 68

Query: 71  SSLSDSETKTESPVFLSENKKKAVTETETDAAAPPVLDGIAAVVGLNVLFGTKTNPTKKT 130
            SL         P F+     K   ET      PPVLDGI AVVG  VLFGT TN TK +
Sbjct: 69  VSL---------PGFI-----KKPPET------PPVLDGIGAVVGQEVLFGT-TN-TKNS 106

Query: 131 ETPD--AVEENIGS-PRKND--------NNTIPVQKNYRGVRKRPWGRWSAEIRDRIGRC 179
           ET D  ++ + IGS  RK++        NN +PVQ+ YRGVRKRPWGRWSAEIRDRIGRC
Sbjct: 107 ETSDFASISKRIGSKERKHERGAKRNCANNGVPVQRTYRGVRKRPWGRWSAEIRDRIGRC 166

Query: 180 RHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSVLPLIATPCLSPS-------SSG 232
           RHWLGTFDTAEEAARAYDAAARRLRG+KARTNFEIP VLP I++    P+       ++ 
Sbjct: 167 RHWLGTFDTAEEAARAYDAAARRLRGAKARTNFEIPPVLPPISSSPSPPNACSSSSLNNA 226

Query: 233 EVKKAKGKVINSNSSGRRNKCSVVTSMAHLFSNNAISFNNNGFDHHQAKRNAKAKDTNTL 292
           EVK+      N        KC+VVTS+AHLFSN    F   G                 +
Sbjct: 227 EVKRRTNNSNNKLIGNGGRKCAVVTSVAHLFSN----FEGKG-----------TSGGGNV 271

Query: 293 ELDLKLGVGLAAKRN---TAASA-PSMAV 317
           ELDLKL  GL    +   +AASA PSM V
Sbjct: 272 ELDLKLATGLGGHHDGNKSAASAPPSMVV 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579198|ref|XP_002530445.1| DNA binding protein, putative [Ricinus communis] gi|223529990|gb|EEF31915.1| DNA binding protein, putative [Ricinus communis]

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 151/323 (46%), Positives = 191/323 (59%), Gaps = 70/323 (21%)

Query: 10  TVPFFSMPDTFQ--TPETFRFFTETQSLCGPIF--NSNLSFP--SLPALNYLNPPHYFPY 63
           +VPFF+ PDTFQ   P+   FF +      P+F  N++  +P  S+ A N LN  +   +
Sbjct: 20  SVPFFTSPDTFQFLPPDASSFFYK------PLFTTNTHRHYPISSVLAYNQLNQTNNNDH 73

Query: 64  LTDVSVDSSLSDSETKTESPVFLSENKKKAVTETETDAAAPPVLDGIAAVVGLNVLFGTK 123
              + + + L+ S+                + ETE+    PP+LDGIAAVVG +VLFGT 
Sbjct: 74  PVSIDISAILAQSDIN--------------IKETES----PPILDGIAAVVGEHVLFGTS 115

Query: 124 TNPTKKTETPDAVEENIGSPRKNDNNT------IPVQKNYRGVRKRPWGRWSAEIRDRIG 177
            +  K      ++ +  GS RK D         +  Q+ YRGVRKRPWGRWSAEIRDRIG
Sbjct: 116 ADAPKPQSQEPSISQRTGS-RKKDGEIHGGGRGVGGQRTYRGVRKRPWGRWSAEIRDRIG 174

Query: 178 RCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSVLPLIATPCLSPSSSGEVKKA 237
           RCRHWLGTFDTAEEAARAYDAAARRLRG+KARTNFEIPSV+P+         S  EVKK 
Sbjct: 175 RCRHWLGTFDTAEEAARAYDAAARRLRGAKARTNFEIPSVVPISG-------SLNEVKKR 227

Query: 238 KGKVINSNSSGRRNKCSVVTSMAHLFSNNAISFNNNGFDHHQAKRNAKAKDTNTLELDLK 297
             KV   +SSGR  KC+VVTS+AHLFS+ + + +NN                  +ELDLK
Sbjct: 228 NSKV---SSSGR--KCAVVTSVAHLFSDTSCNISNN------------------VELDLK 264

Query: 298 LGVGLA--AKRNTAAS-APSMAV 317
           LGVG    A++N+ AS  PSM V
Sbjct: 265 LGVGFGGNAEKNSPASPPPSMVV 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743600|emb|CBI36467.3| unnamed protein product [Vitis vinifera]

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 147/306 (48%), Positives = 180/306 (58%), Gaps = 60/306 (19%)

Query: 11  VPFFSMPDTFQTPETFRFFTETQSLCGPIFNSNLSFPSLPALNYLNPPHYFPYLTDVSVD 70
           V FF  P++F+  ET R+ +ET    G +  ++ S  S+     +N P     L D+S  
Sbjct: 22  VTFFPKPESFEVHETLRYLSETAPFYGSLLGAHFSLSSVSVPELVNLPSNGAVLADLS-- 79

Query: 71  SSLSDSETKTESPVFLSENKKKAVTETETDAAAPPVLDGIAAVVGLNVLFGTKTNPTKKT 130
            +L D                     T+ +A  PPVLDGIAAVVG +VLFG K + +   
Sbjct: 80  GNLGDG--------------------TQKEAEIPPVLDGIAAVVGQHVLFGGKKSGSSLV 119

Query: 131 ETPDAVEENIGSPRKNDNNTIPVQKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAE 190
           +     ++NIG         + VQK+YRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAE
Sbjct: 120 D-----KKNIGD--------VSVQKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAE 166

Query: 191 EAARAYDAAARRLRGSKARTNFEIPSVLPLIATPCLSPSSSGEVKK---AKGKVINSNSS 247
           EAARAYDAAARRLRGSKARTNFEIPSVLPL +    S SSS E+K+   +K K  N    
Sbjct: 167 EAARAYDAAARRLRGSKARTNFEIPSVLPLSSP--SSSSSSSEMKRNMSSKPKAQN---- 220

Query: 248 GRRNKCSVVTSMAHLFSNNAISFNNNGFDHHQAKRNAKAKDTNTLELDLKLGVGLAAKRN 307
             R KCSVVTS+AHLFS+++I                + K    +ELDLKLGV   + RN
Sbjct: 221 --RRKCSVVTSVAHLFSSSSI------------PSTTEVKGKVNVELDLKLGVNF-SNRN 265

Query: 308 TAASAP 313
            AAS P
Sbjct: 266 -AASVP 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443077|ref|XP_002271298.1| PREDICTED: ethylene-responsive transcription factor ERF084-like [Vitis vinifera]

 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 149/318 (46%), Positives = 182/318 (57%), Gaps = 63/318 (19%)

Query: 11  VPFFSMPDTFQTPETFRFFTETQSLCGPIFNSNLSFPSLPALNYLNPPHYFPYLTDVSVD 70
           V FF  P++F+  ET R+ +ET    G +  ++ S  S+     +N P     L D+S  
Sbjct: 9   VTFFPKPESFEVHETLRYLSETAPFYGSLLGAHFSLSSVSVPELVNLPSNGAVLADLS-- 66

Query: 71  SSLSDSETKTESPVFLSENKKKAVTETETDAAAPPVLDGIAAVVGLNVLFGTKTNPTKKT 130
            +L D                     T+ +A  PPVLDGIAAVVG +VLFG K    K  
Sbjct: 67  GNLGDG--------------------TQKEAEIPPVLDGIAAVVGQHVLFGGK----KSG 102

Query: 131 ETPDA--------VEENIGSPR----KNDNNTIPVQKNYRGVRKRPWGRWSAEIRDRIGR 178
            + D         V +  G+ +    K +   + VQK+YRGVRKRPWGRWSAEIRDRIGR
Sbjct: 103 SSCDGGGISGFVPVSQRFGAEKTVVDKKNIGDVSVQKSYRGVRKRPWGRWSAEIRDRIGR 162

Query: 179 CRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSVLPLIATPCLSPSSSGEVKK-- 236
           CRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSVLPL +    S SSS E+K+  
Sbjct: 163 CRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSVLPLSSP--SSSSSSSEMKRNM 220

Query: 237 -AKGKVINSNSSGRRNKCSVVTSMAHLFSNNAISFNNNGFDHHQAKRNAKAKDTNTLELD 295
            +K K  N      R KCSVVTS+AHLFS+++I                + K    +ELD
Sbjct: 221 SSKPKAQN------RRKCSVVTSVAHLFSSSSI------------PSTTEVKGKVNVELD 262

Query: 296 LKLGVGLAAKRNTAASAP 313
           LKLGV   + RN AAS P
Sbjct: 263 LKLGVNF-SNRN-AASVP 278

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|379056270|dbj|BAL68175.1| ethylene response factor #231 [Nicotiana tabacum]

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/225 (49%), Positives = 137/225 (60%), Gaps = 43/225 (19%)

Query: 99  TDAAAPPVLDGIAAVVGLNVLFGTKTNPTKKT---------------ETPDAVEENIGSP 143
           T+   PPVL+GIAAVVG +VLFG+  N  K++                T  A ++  G  
Sbjct: 52  TEHEKPPVLEGIAAVVGEHVLFGSCNNKNKRSVDQNSESSTAVSILKRTCPAPDKYRGGA 111

Query: 144 RKNDNNTIPVQKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRL 203
           RK +   +PV+++YRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDT EEAARAYDAAAR L
Sbjct: 112 RKEEKRNVPVERSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTPEEAARAYDAAARWL 171

Query: 204 RGSKARTNFEIPSVLPL-----IATPCLSPSSSGEVKKAK--GKVINSNSSGRRNKCSVV 256
           RGSKARTNF+IP V+PL       +   S ++S E+KK K      N ++     KCSVV
Sbjct: 172 RGSKARTNFQIPPVVPLPLNSSPTSISSSSNTSTELKKNKKISSCANKSNMPTTRKCSVV 231

Query: 257 TSMAHLFSNNAISFNNNGFDHHQAKRNAKAKDTNTLELDLKLGVG 301
           TS AHLFS+++                     T  +ELDLKLG G
Sbjct: 232 TSAAHLFSSSS---------------------TPAVELDLKLGFG 255

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468047|ref|XP_003604308.1| Ethylene-responsive transcription factor [Medicago truncatula] gi|355505363|gb|AES86505.1| Ethylene-responsive transcription factor [Medicago truncatula]

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/161 (62%), Positives = 115/161 (71%), Gaps = 11/161 (6%)

Query: 107 LDGIAAVVGLNVLFG---TKTNPTKKTETPDAVEENIGSPRKNDNNTIPVQKNYRGVRKR 163
           ++ IAA+VG  +LFG    KT P+     P  +   +  P K  NNT P+QKNYRGVRKR
Sbjct: 3   IERIAAIVGEQILFGPHHNKTTPSTCVSNPKTL--TLTEPTKT-NNTNPLQKNYRGVRKR 59

Query: 164 PWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSVLPLIAT 223
           PWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNF+IPSVLP+   
Sbjct: 60  PWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFKIPSVLPVP-- 117

Query: 224 PCLSPSSSGEVKKAKGKVINSNSSGRRNKCSVVTSMAHLFS 264
             LSP+SS      KGK   S  +  R KC VV+S+  LFS
Sbjct: 118 --LSPTSSSSSSDMKGKNKKSVRNSVR-KCCVVSSVGELFS 155

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491193|ref|XP_004158825.1| PREDICTED: ethylene-responsive transcription factor ERF084-like [Cucumis sativus]

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/194 (53%), Positives = 118/194 (60%), Gaps = 42/194 (21%)

Query: 107 LDGIAAVVGLNVLFGTKTNPTKKTETPDAVEENIGSPRKNDNNTIPVQKNYRGVRKRPWG 166
           LDGIAAVVG  VLFG       K+ +  +                  Q++YRGVRKRPWG
Sbjct: 25  LDGIAAVVGRQVLFGDNRPTPTKSSSSTSATAPTTG-----------QRSYRGVRKRPWG 73

Query: 167 RWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSVLPLIATPCL 226
           RWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFE+P V+P+ +T   
Sbjct: 74  RWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEMPLVVPMESTSAW 133

Query: 227 SPSSSGEVKKAKGKVINSNSSGRRNKCSVVTSMAHLFSNNAISFNNNGFDHHQAKRNAKA 286
           S +SS EVK+   K+  ++      KCSVVTS AHLFS                      
Sbjct: 134 S-TSSVEVKRNGNKLKKND-----RKCSVVTSAAHLFSPG-------------------- 167

Query: 287 KDTNTLELDLKLGV 300
                +ELDLKLGV
Sbjct: 168 -----VELDLKLGV 176

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839879|ref|XP_002887821.1| ethylene-responsive element-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297333662|gb|EFH64080.1| ethylene-responsive element-binding family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 124/304 (40%), Positives = 149/304 (49%), Gaps = 66/304 (21%)

Query: 10  TVPFFSMPDTFQTPETFRFFTETQSLCGPIFNSNLSFPSLPALNYLNP---PHYFPYLTD 66
           +VP  SM +T Q+ ET+    ET  +C P F +N S   + +L   NP   P   P + D
Sbjct: 13  SVPLSSMHETRQSFETYGLSKETPLVCMPFFETNTSSFGISSLFSSNPKPEPENTPRVMD 72

Query: 67  VSVDSSLSDSETKTESPVFLSENKKKAVTETETDAAAPPVLDGIAAVVGLNVLFGTKTN- 125
                                                    D IAAVVG NVLFG     
Sbjct: 73  -----------------------------------------DSIAAVVGENVLFGDNNKV 91

Query: 126 ----PTKKTETPDAVEENIGSPRKNDNNTIPVQKNYRGVRKRPWGRWSAEIRDRIGRCRH 181
               P  +T T   V+     P+KN          + GVRKRPWGRWSAEIRDRIGRCRH
Sbjct: 92  SDHFPATET-TGGGVKRGRKMPQKNGG--------FMGVRKRPWGRWSAEIRDRIGRCRH 142

Query: 182 WLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSVLPLIATPCLSPSSSGEVKKAKGKV 241
           WLGTFDTAEEAARAYDAAARRLRG+KA+TNF IP V P      L  SS+ E  + + K 
Sbjct: 143 WLGTFDTAEEAARAYDAAARRLRGTKAKTNFVIPPVFP--EEIALVQSSTTEENRRRRKK 200

Query: 242 INSNSSGRRNKCSVVTSMAHLFSNNAISFNNNGFDHHQAKRNAKAKDTNTLELDLKLGVG 301
              N      KC  VTS+A LFSN   S +++   +     +   K    LELDLKL +G
Sbjct: 201 KRLNV----RKCVKVTSVAQLFSNTNTSSSSSSNVNVVTSIDNLEK--MGLELDLKLSLG 254

Query: 302 LAAK 305
           L  K
Sbjct: 255 LFRK 258

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168047796|ref|XP_001776355.1| predicted protein [Physcomitrella patens subsp. patens] gi|162672315|gb|EDQ58854.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/56 (91%), Positives = 55/56 (98%)

Query: 157 YRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNF 212
           +RGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAE+AARAYD+AAR LRGSKA+TNF
Sbjct: 1   FRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEDAARAYDSAARALRGSKAKTNF 56

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
TAIR|locus:2198978	256	AT1G80580 [Arabidopsis thalian	0.561	0.695	0.393	2.3e-31
TAIR|locus:2167659	200	ERF9 "erf domain protein 9" [A	0.252	0.4	0.444	7.7e-13
TAIR|locus:505006142	159	CRF7 "AT1G22985" [Arabidopsis	0.264	0.528	0.413	2.2e-12
TAIR|locus:2170101	220	ERF110 "ethylene response fact	0.280	0.404	0.406	2.3e-12
TAIR|locus:2032510	189	ERF12 "ERF domain protein 12"	0.261	0.439	0.440	3e-12
TAIR|locus:2009655	185	ERF8 "ethylene response factor	0.227	0.389	0.438	3e-12
TAIR|locus:2128429	343	CRF2 "AT4G23750" [Arabidopsis	0.384	0.355	0.366	3.4e-12
TAIR|locus:2032500	166	ERF11 "ERF domain protein 11"	0.271	0.518	0.423	5.1e-12
TAIR|locus:2159068	211	LEP "LEAFY PETIOLE" [Arabidops	0.264	0.398	0.409	6.7e-12
TAIR|locus:2087065	222	ERF4 "ethylene responsive elem	0.217	0.310	0.479	3.4e-11

TAIR|locus:2198978 AT1G80580 [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
 Identities = 76/193 (39%), Positives = 92/193 (47%)

Query:   108 DGIAAVVGLNVLFGXXXXXXXXXXXXDAVEENIGSPRKNDNNTIPVQKNYRGVRKRPWGR 167
             D IAAVVG NVLFG              V+     P+K           + GVRKRPWGR
Sbjct:    75 DSIAAVVGENVLFGDKNKVSDHLTKEGGVKRGRKMPQKTGG--------FMGVRKRPWGR 126

Query:   168 WSAEIRDRIGRCRHWLGTFDTXXXXXXXXXXXXXXXXGSKARTNFEIPSVLPLIATPCLS 227
             WSAEIRDRIGRCRHWLGTFDT                G+KA+TNF IP + P        
Sbjct:   127 WSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGTKAKTNFVIPPLFPKEIAQAQE 186

Query:   228 PSSSGEVKKAKGKVINSNSSGRRNKCSVVTSMAHLFSNNAISFNNNGFDHHQAKRNAKAK 287
              +   + +K K K      S R  KC  VTS+A LF +   +F N+         +    
Sbjct:   187 DNRMRQKQKKKKK---KKVSVR--KCVKVTSVAQLFDD--ANFINSSSIKGNVISSIDNL 239

Query:   288 DTNTLELDLKLGV 300
             +   LELDL LG+
Sbjct:   240 EKMGLELDLSLGL 252

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2167659 ERF9 "erf domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 7.7e-13, P = 7.7e-13
 Identities = 36/81 (44%), Positives = 46/81 (56%)

Query:   135 AVEENIGSPRKNDNNTIPVQKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTXXXXXX 194
             AV E  G  +     T+  + ++RGVRKRPWGR++AEIRD   + R WLGTFDT      
Sbjct:    12 AVSEG-GGGKTMTMTTMRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAAR 70

Query:   195 XXXXXXXXXXGSKARTNFEIP 215
                       GSKA+TNF +P
Sbjct:    71 AYDTAAREFRGSKAKTNFPLP 91

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:505006142 CRF7 "AT1G22985" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
 Identities = 36/87 (41%), Positives = 45/87 (51%)

Query:   149 NTIPVQKNYRGVRKRPWGRWSAEIR-DRI-GRC-RHWLGTFDTXXXXXXXXXXXXXXXXG 205
             NT   +K +RGVR+RPWG+W+AEIR  R+ GR  R WLGTF+T                G
Sbjct:    67 NTTANKKKFRGVRQRPWGKWAAEIRCGRVKGRPERIWLGTFETAEEAALAYDNAAIQLIG 126

Query:   206 SKARTNFEIPSVLPLIATPCLSPSSSG 232
               A TNF  P V   +     S +S G
Sbjct:   127 PDAPTNFGRPDVDSAVVKKQDSDASGG 153

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2170101 ERF110 "ethylene response factor 110" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 2.3e-12, P = 2.3e-12
 Identities = 37/91 (40%), Positives = 48/91 (52%)

Query:   154 QKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTXXXXXXXXXXXXXXXXGSKARTNF- 212
             ++ YRGVR+RPWG+W+AEIRD     R WLGTFDT                G+KA+ NF 
Sbjct:    74 KRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFP 133

Query:   213 EIPSVLPLIATPCLSPSSSGEVKKAKGKVIN 243
             E   +LP    P L   +     KA+  +IN
Sbjct:   134 EDVRILPP-PPPLLRSPADTVANKAEEDLIN 163

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2032510 ERF12 "ERF domain protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 37/84 (44%), Positives = 47/84 (55%)

Query:   148 NNTIPVQKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTXXXXXXXXXXXXXXXXGSK 207
             + T   + +YRGVRKRPWGR++AEIRD   + R WLGTFDT                G K
Sbjct:     3 STTCAREVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIK 62

Query:   208 ARTNFEIPSVLPLIATPCLSPSSS 231
             A+TNF  P  L L   P  +PS++
Sbjct:    63 AKTNFPSPLSLDLNHLPS-APSAA 85

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2009655 ERF8 "ethylene response factor 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 32/73 (43%), Positives = 43/73 (58%)

Query:   142 SPRKNDNNTIPVQKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTXXXXXXXXXXXXX 201
             +P  +++N    +  YRGVRKRPWGR++AEIRD + + R WLGTFDT             
Sbjct:    17 NPTHHESNAAK-EIRYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAAR 75

Query:   202 XXXGSKARTNFEI 214
                G KA+TNF +
Sbjct:    76 DFRGVKAKTNFGV 88

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2128429 CRF2 "AT4G23750" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.4e-12, P = 3.4e-12
 Identities = 48/131 (36%), Positives = 67/131 (51%)

Query:   138 ENIGSPRKNDNNTIPVQKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTXXXXXXXXX 197
             E+  SP  +   T   +K +RGVR+RPWG+W+AEIRD + R R WLGT++T         
Sbjct:   103 ESTVSPVVSATTTTTGEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYD 162

Query:   198 XXXXXXXGSKARTNFEIPSVLPLIATPCLSPSSSGEVKKAKGKVINSNSSGRRNKCSVVT 257
                    G  A TNF   SV P  AT   +P  S  VKK K K  N+ S   +   +  +
Sbjct:   163 NAAIQLRGPDALTNF---SVTPTTATEKKAPPPS-PVKKKKKK--NNKS---KKSVTASS 213

Query:   258 SMAHLFSNNAI 268
             S++   SN+ +
Sbjct:   214 SISRSSSNDCL 224

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042991 "transcription factor import into nucleus" evidence=RCA;IDA

GO:0048825 "cotyledon development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048364 "root development" evidence=IEP

GO:0042802 "identical protein binding" evidence=IPI

GO:0006606 "protein import into nucleus" evidence=RCA

TAIR|locus:2032500 ERF11 "ERF domain protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 5.1e-12, P = 5.1e-12
 Identities = 39/92 (42%), Positives = 50/92 (54%)

Query:   144 RKNDNNTIPVQKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTXXXXXXXXXXXXXXX 203
             + N+ N +     YRGVRKRPWGR++AEIRD   + R WLGTFDT               
Sbjct:    11 KTNEGNGV----RYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEF 66

Query:   204 XGSKARTNFEIPSVLP--LIATPCLSPSSSGE 233
              G+KA+TNF   ++    L  T  LS SS+ E
Sbjct:    67 RGAKAKTNFPCYNINAHCLSLTQSLSQSSTVE 98

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2159068 LEP "LEAFY PETIOLE" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 6.7e-12, P = 6.7e-12
 Identities = 36/88 (40%), Positives = 48/88 (54%)

Query:   142 SPRKNDNNTIPVQKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTXXXXXXXXXXXXX 201
             S +K D+    V   + GVR+RPWGR++AEIRD   + RHWLGTFDT             
Sbjct:     8 SKKKQDDQ---VGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAAR 64

Query:   202 XXXGSKARTNFEIPSVLPLIA-TPCLSP 228
                G++ARTNF    + P  + T  +SP
Sbjct:    65 SMRGTRARTNFVYSDMPPSSSVTSIVSP 92

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009739 "response to gibberellin stimulus" evidence=IMP

GO:0010030 "positive regulation of seed germination" evidence=IMP

TAIR|locus:2087065 ERF4 "ethylene responsive element binding factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 3.4e-11, P = 3.4e-11
 Identities = 35/73 (47%), Positives = 43/73 (58%)

Query:   148 NNTIPVQKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTXXXXXXXXXXXXXXXXGSK 207
             NN   ++  YRGVRKRPWGR++AEIRD   + R WLGTFDT                G+K
Sbjct:    18 NNAKEIR--YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAK 75

Query:   208 ARTNFEIPSVLPL 220
             A+TNF  P+ L L
Sbjct:    76 AKTNF--PTFLEL 86

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0016604 "nuclear body" evidence=IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	317
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-32
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-32
pfam00847	53	pfam00847, AP2, AP2 domain	4e-16

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  114 bits (288), Expect = 2e-32
 Identities = 40/61 (65%), Positives = 43/61 (70%)

Query: 156 NYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIP 215
            YRGVR+RPWG+W AEIRD     R WLGTFDTAEEAARAYD AA + RG  AR NF   
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Query: 216 S 216
            
Sbjct: 61  L 61

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  114 bits (287), Expect = 2e-32
 Identities = 42/60 (70%), Positives = 45/60 (75%)

Query: 155 KNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEI 214
             YRGVR+RPWG+W AEIRD  G  R WLGTFDTAEEAARAYD AA +LRGS A  NF  
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 70.8 bits (174), Expect = 4e-16
 Identities = 30/52 (57%), Positives = 33/52 (63%), Gaps = 4/52 (7%)

Query: 157 YRGVRKRP-WGRWSAEIRDRIGRC--RHWLGTFDTAEEAARAYDAAARRLRG 205
           Y+GVR    WGRW AEIRD   +   R  LGTF T EEAARA  AA  +LRG
Sbjct: 3   YKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	317
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.82
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.81
PHA00280	121	putative NHN endonuclease	99.33
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.02

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.82  E-value=3.4e-20  Score=139.44  Aligned_cols=64  Identities=63%  Similarity=1.001  Sum_probs=61.1

Q ss_pred             ceeeEEeCCCCcEEEEEeeCCCCeeecccCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCCCCCC
Q 047950          156 NYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIPSVLP  219 (317)
Q Consensus       156 ~yRGVr~r~~GKW~A~Ir~~~~~kri~LGtFdT~EEAArAYD~AA~~~~G~~A~~NFp~s~y~~  219 (317)
                      +|+||+++++|||+|+|+++.+++.+|||+|+|+||||+|||.|+++++|.++.+|||.++|++
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~~   64 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYDS   64 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCCC
Confidence            5899998889999999999889999999999999999999999999999999999999999864

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.81  E-value=6.2e-20  Score=136.34  Aligned_cols=61  Identities=69%  Similarity=1.119  Sum_probs=57.4

Q ss_pred             CceeeEEeCCCCcEEEEEeeCCCCeeecccCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCC
Q 047950          155 KNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIP  215 (317)
Q Consensus       155 S~yRGVr~r~~GKW~A~Ir~~~~~kri~LGtFdT~EEAArAYD~AA~~~~G~~A~~NFp~s  215 (317)
                      |+|+||+++++|||+|+|+++..++++|||+|+|+||||+|||.|+++++|.++.+|||.+
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999888899999999955599999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>PHA00280 putative NHN endonuclease

Probab=99.33  E-value=2.7e-12  Score=109.15  Aligned_cols=54  Identities=22%  Similarity=0.300  Sum_probs=49.2

Q ss_pred             CCCceeeEEeC-CCCcEEEEEeeCCCCeeecccCCCCHHHHHHHHHHHHHHhcCCCCc
Q 047950          153 VQKNYRGVRKR-PWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKAR  209 (317)
Q Consensus       153 ~tS~yRGVr~r-~~GKW~A~Ir~~~~~kri~LGtFdT~EEAArAYD~AA~~~~G~~A~  209 (317)
                      .+|+|+||++. ..|||+|+|++  +|++++||.|+++|+|+.||+ ++.+++|++|.
T Consensus        65 N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         65 NTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            48999999865 57999999998  999999999999999999997 78899999885

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.02  E-value=5.2e-10  Score=81.11  Aligned_cols=52  Identities=40%  Similarity=0.568  Sum_probs=44.9

Q ss_pred             CceeeEEeC-CCCcEEEEEeeCCC---CeeecccCCCCHHHHHHHHHHHHHHhcCC
Q 047950          155 KNYRGVRKR-PWGRWSAEIRDRIG---RCRHWLGTFDTAEEAARAYDAAARRLRGS  206 (317)
Q Consensus       155 S~yRGVr~r-~~GKW~A~Ir~~~~---~kri~LGtFdT~EEAArAYD~AA~~~~G~  206 (317)
                      |+|+||++. ..++|+|+|++...   +++++||.|+++|||++||+.+++.++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            689999865 57999999998322   49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	317
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		9e-08
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		1e-07

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 155 KNYRGVRKRPWGRWSAEIRDRIGR-CRHWLGTFDTXXXXXXXXXXXXXXXXGSKARTNFE 213
           K+YRGVR+RPWG+++AEIRD      R WLGTF+T                GS+A  NF 
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
Query: 214 I 214
           +
Sbjct: 61  L 61

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 155 KNYRGVRKRPWGRWSAEIRDRIGR-CRHWLGTFDTXXXXXXXXXXXXXXXXGSKARTNFE 213
           K+YRGVR+RPWG+++AEIRD      R WLGTF+T                GS+A  NF 
Sbjct: 4   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63
Query: 214 I 214
           +
Sbjct: 64  L 64
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	317
1gcc_A	63	Ethylene responsive element binding factor 1; tran	8e-35

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  120 bits (302), Expect = 8e-35
 Identities = 38/59 (64%), Positives = 47/59 (79%), Gaps = 1/59 (1%)

Query: 155 KNYRGVRKRPWGRWSAEIRDRIGR-CRHWLGTFDTAEEAARAYDAAARRLRGSKARTNF 212
           K+YRGVR+RPWG+++AEIRD      R WLGTF+TAE+AA AYD AA R+RGS+A  NF
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	317
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.88

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.88  E-value=3e-23  Score=156.09  Aligned_cols=60  Identities=62%  Similarity=1.058  Sum_probs=56.7

Q ss_pred             ceeeEEeCCCCcEEEEEeeCCC-CeeecccCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCC
Q 047950          156 NYRGVRKRPWGRWSAEIRDRIG-RCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIP  215 (317)
Q Consensus       156 ~yRGVr~r~~GKW~A~Ir~~~~-~kri~LGtFdT~EEAArAYD~AA~~~~G~~A~~NFp~s  215 (317)
                      +||||++++||||+|+|+++.. ++++|||+|+|+||||+|||.|+++++|.++.+|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999999899999999999864 79999999999999999999999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	317
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-31

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  110 bits (277), Expect = 2e-31
 Identities = 38/59 (64%), Positives = 47/59 (79%), Gaps = 1/59 (1%)

Query: 155 KNYRGVRKRPWGRWSAEIRDRIG-RCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNF 212
           K+YRGVR+RPWG+++AEIRD      R WLGTF+TAE+AA AYD AA R+RGS+A  NF
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	317
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.89

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.89  E-value=5.9e-24  Score=158.71  Aligned_cols=59  Identities=63%  Similarity=1.082  Sum_probs=55.7

Q ss_pred             ceeeEEeCCCCcEEEEEeeC-CCCeeecccCCCCHHHHHHHHHHHHHHhcCCCCcCCCCC
Q 047950          156 NYRGVRKRPWGRWSAEIRDR-IGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEI  214 (317)
Q Consensus       156 ~yRGVr~r~~GKW~A~Ir~~-~~~kri~LGtFdT~EEAArAYD~AA~~~~G~~A~~NFp~  214 (317)
                      +||||+++++|||+|+|+++ .+++++|||+|+|+||||+|||.||++++|+++.+|||+
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~   61 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL   61 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCc
Confidence            59999998999999999986 456899999999999999999999999999999999997