Citrus Sinensis ID: 048013

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAASF
Secondary Structure (PSIPRED)
cccccccccccccEEEEcccccccccHHHHccccccccccEEEEccccccccccEEEEccccEEEcccccccccHHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHccccEEEEEccccHHHHHHHHccccEEEEcccccccHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHcccEEEEEcccccccccccHHHcccc
Secondary Structure Prediction (SSPRO)
EEcccccccccccEEEEccEEcccccHHHHcccHHHccccEEccEccEccccEcEEEEEHHHEEEccccccHHHHHcHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHcccccEEEEcccccccccccHHHHHccc
Coil and Loop (DISEMBL)
kvgsevktlvpgdrvalepgiscwqcdyckggrynlcpeskglgsppvhgclanqvvhpadlcfklpdnvsleegamceplsvgvhacrranigpetnvlimgsgPIGLVTMLAARafgaprivivdvddYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGtgidvsfdcagfnKTMSTALSAtraggkvclvgmghremtvpltpaaasf
Flexible Loop (DISEMBL)
kvgsevktlvpgdrvalepgisCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAkklgadnivkvSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHremtvpltpaaasf
Low Complexity Region (SEG)
KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAASF
Disordered region (IsUnstruct)
********LVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR*************
Disordered Region (DISOPRED)
KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAASF
Disordered Region (DISEMBL)
KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAASF
Disordered Region (DISPRO)
*VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAASF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNxxxxxxxxxxxxxxxxxxxxxMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAASF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
Q1PSI9	366	L-idonate 5-dehydrogenase	no	no	0.990	0.584	0.799	4e-98
Q58D31	356	Sorbitol dehydrogenase OS	yes	no	0.972	0.589	0.471	8e-48
Q00796	357	Sorbitol dehydrogenase OS	yes	no	0.972	0.588	0.471	5e-47
P07846	354	Sorbitol dehydrogenase OS	N/A	no	0.972	0.593	0.462	6e-47
Q4R639	357	Sorbitol dehydrogenase OS	N/A	no	0.972	0.588	0.462	2e-46
P27867	357	Sorbitol dehydrogenase OS	yes	no	0.972	0.588	0.448	3e-46
Q5R5F3	357	Sorbitol dehydrogenase OS	yes	no	0.972	0.588	0.467	3e-46
Q64442	357	Sorbitol dehydrogenase OS	yes	no	0.972	0.588	0.448	6e-46
Q86ZV0	358	D-xylulose reductase A OS	yes	no	0.972	0.586	0.425	8e-44
Q4WAU7	358	Probable D-xylulose reduc	no	no	0.976	0.589	0.422	6e-43

>sp|Q1PSI9|IDND_VITVI L-idonate 5-dehydrogenase OS=Vitis vinifera GN=VIT_16s0100g00290 PE=1 SV=2

 Score =  357 bits (916), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 171/214 (79%), Positives = 191/214 (89%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VGSEVK LV GDRVALEPGISC +C  C+ G+YNLC E K  GSPP +G LANQVVHP+
Sbjct: 89  EVGSEVKNLVAGDRVALEPGISCNRCSLCRNGQYNLCREMKFFGSPPTNGSLANQVVHPS 148

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
           +LCFKLPDNVSLEEGAMCEPLSVG+HACRRAN+GPETNVLIMGSGPIGLVTMLAARAFGA
Sbjct: 149 NLCFKLPDNVSLEEGAMCEPLSVGIHACRRANVGPETNVLIMGSGPIGLVTMLAARAFGA 208

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
           PRIV+VDVDD RL++AK LGAD+I++VSTN+QD+ EEV KIQ  M TG+DVSFDC GFNK
Sbjct: 209 PRIVLVDVDDQRLAIAKDLGADDIIRVSTNIQDLDEEVAKIQSTMVTGVDVSFDCVGFNK 268

Query: 181 TMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
           TMSTAL+ATRAGGKVCLVG+   EMTVPLTPAAA
Sbjct: 269 TMSTALNATRAGGKVCLVGLAQSEMTVPLTPAAA 302

Involved in the catabolism of ascorbate to tartrate. The enzyme has no activity with NADP(+).
Vitis vinifera (taxid: 29760)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 8

>sp|Q58D31|DHSO_BOVIN Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 SV=3

 Score =  190 bits (482), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 101/214 (47%), Positives = 143/214 (66%), Gaps = 4/214 (1%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           KVGS V+ L PGDRVA+EPG      ++CK GRYNL P      +PP  G L     H A
Sbjct: 77  KVGSLVRHLQPGDRVAIEPGAPRETDEFCKIGRYNLSPTIFFCATPPDDGNLCRFYKHNA 136

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
           + C+KLPDNV+ EEGA+ EPLSVG+HACRRA +     VL+ G+GPIGLV++LAA+A GA
Sbjct: 137 NFCYKLPDNVTFEEGALIEPLSVGIHACRRAGVTLGNKVLVCGAGPIGLVSLLAAKAMGA 196

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGFN 179
            ++V+ D+   RLS AK++GAD I+++S  + Q+IA++VE +   +G+  +V+ +C G  
Sbjct: 197 AQVVVTDLSASRLSKAKEVGADFILQISNESPQEIAKKVEGL---LGSKPEVTIECTGVE 253

Query: 180 KTMSTALSATRAGGKVCLVGMGHREMTVPLTPAA 213
            ++   + AT +GG + LVG+G    +VPL  AA
Sbjct: 254 TSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAA 287

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q00796|DHSO_HUMAN Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4

 Score =  187 bits (474), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 101/214 (47%), Positives = 138/214 (64%), Gaps = 4/214 (1%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           KVGS VK L PGDRVA+EPG      ++CK GRYNL P      +PP  G L     H A
Sbjct: 78  KVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNA 137

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
             C+KLPDNV+ EEGA+ EPLSVG+HACRR  +     VL+ G+GPIG+VT+L A+A GA
Sbjct: 138 AFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGA 197

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGFN 179
            ++V+ D+   RLS AK++GAD ++++S  + Q+IA +VE     +G   +V+ +C G  
Sbjct: 198 AQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVE---GQLGCKPEVTIECTGAE 254

Query: 180 KTMSTALSATRAGGKVCLVGMGHREMTVPLTPAA 213
            ++   + ATR+GG + LVG+G    TVPL  AA
Sbjct: 255 ASIQAGIYATRSGGNLVLVGLGSEMTTVPLLHAA 288

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|P07846|DHSO_SHEEP Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 SV=1

 Score =  187 bits (474), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 99/214 (46%), Positives = 142/214 (66%), Gaps = 4/214 (1%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           KVGS V+ L PGDRVA++PG      ++CK GRYNL P      +PP  G L     H A
Sbjct: 75  KVGSLVRHLQPGDRVAIQPGAPRQTDEFCKIGRYNLSPTIFFCATPPDDGNLCRFYKHNA 134

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
           + C+KLPDNV+ EEGA+ EPLSVG+HACRRA +     VL+ G+GPIGLV +LAA+A GA
Sbjct: 135 NFCYKLPDNVTFEEGALIEPLSVGIHACRRAGVTLGNKVLVCGAGPIGLVNLLAAKAMGA 194

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGFN 179
            ++V+ D+   RLS AK++GAD I+++S  + ++IA++VE +   +G+  +V+ +C G  
Sbjct: 195 AQVVVTDLSASRLSKAKEVGADFILEISNESPEEIAKKVEGL---LGSKPEVTIECTGVE 251

Query: 180 KTMSTALSATRAGGKVCLVGMGHREMTVPLTPAA 213
            ++   + AT +GG + LVG+G    +VPL  AA
Sbjct: 252 TSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAA 285

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Ovis aries (taxid: 9940)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q4R639|DHSO_MACFA Sorbitol dehydrogenase OS=Macaca fascicularis GN=SORD PE=2 SV=3

 Score =  185 bits (469), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 99/214 (46%), Positives = 140/214 (65%), Gaps = 4/214 (1%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           KVGS VK L PGDRVA+EPG+     ++CK GRYNL P      +PP  G L     H A
Sbjct: 78  KVGSLVKHLKPGDRVAIEPGVPRENDEFCKSGRYNLSPSIFFCATPPDDGNLCRFYKHNA 137

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
             C+KLPDNV+ EEGA+ EPLSVG+HACRR  +     VL+ G+GPIG+V++L A+A GA
Sbjct: 138 AFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHRVLVCGAGPIGVVSLLVAKAMGA 197

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGFN 179
            ++V+ D+   RLS AK++GAD ++++S  + Q+IA +VE +   +G   +V+ +C G  
Sbjct: 198 AQVVVTDLSAPRLSKAKEIGADLVLQISKESPQEIAGKVEGL---LGCKPEVTIECTGAE 254

Query: 180 KTMSTALSATRAGGKVCLVGMGHREMTVPLTPAA 213
            ++   + ATR+GG + LVG+G    T+PL  AA
Sbjct: 255 ASIQAGIYATRSGGTLVLVGLGSEMTTIPLLHAA 288

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|P27867|DHSO_RAT Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sord PE=1 SV=4

 Score =  185 bits (469), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 96/214 (44%), Positives = 141/214 (65%), Gaps = 4/214 (1%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           KVG  VK L PGDRVA+EPG+     ++CK GRYNL P      +PP  G L     H A
Sbjct: 78  KVGPMVKHLKPGDRVAIEPGVPREIDEFCKIGRYNLTPSIFFCATPPDDGNLCRFYKHSA 137

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
           D C+KLPD+V+ EEGA+ EPLSVG++ACRR ++     VL+ G+GPIG+VT+L A+A GA
Sbjct: 138 DFCYKLPDSVTFEEGALIEPLSVGIYACRRGSVSLGNKVLVCGAGPIGIVTLLVAKAMGA 197

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFN 179
            ++V++D+   RL+ AK++GAD  ++V+     DIA++VE +   +G+  +V+ +C G  
Sbjct: 198 SQVVVIDLSASRLAKAKEVGADFTIQVAKETPHDIAKKVESV---LGSKPEVTIECTGAE 254

Query: 180 KTMSTALSATRAGGKVCLVGMGHREMTVPLTPAA 213
            ++ T + AT +GG + +VGMG   + +PL  AA
Sbjct: 255 SSVQTGIYATHSGGTLVVVGMGPEMINLPLVHAA 288

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q5R5F3|DHSO_PONAB Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=2 SV=1

 Score =  185 bits (469), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 100/214 (46%), Positives = 138/214 (64%), Gaps = 4/214 (1%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           KVGS VK L PGDRVA+EPG      ++CK GRYNL P      +PP  G L     H A
Sbjct: 78  KVGSLVKHLKPGDRVAIEPGAPRENDEFCKIGRYNLSPSIFFCATPPDDGNLCRFYKHNA 137

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
             C+KLPDNV+ EEGAM EPLSVG+HACRR  +     VL+ G+GPIG+VT+L A+A GA
Sbjct: 138 AFCYKLPDNVTFEEGAMIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGA 197

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGFN 179
            ++V+ D+   RLS AK++GAD ++++S  + Q+IA +VE +   +G   +V+ +C G  
Sbjct: 198 AQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGL---LGCKPEVTIECTGAG 254

Query: 180 KTMSTALSATRAGGKVCLVGMGHREMTVPLTPAA 213
            ++   + AT +GG + LVG+G    T+PL  AA
Sbjct: 255 ASIQAGIYATHSGGTLVLVGLGSEMTTIPLLHAA 288

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q64442|DHSO_MOUSE Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=1 SV=3

 Score =  184 bits (466), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 96/214 (44%), Positives = 139/214 (64%), Gaps = 4/214 (1%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           KVG  VK L PGDRVA+EPG+     +YCK GRYNL P      +PP  G L     H A
Sbjct: 78  KVGELVKHLKPGDRVAIEPGVPREVDEYCKIGRYNLTPTIFFCATPPDDGNLCRFYKHNA 137

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
           D C+KLPD+V+ EEGA+ EPLSVG++ACRR ++     VL+ G+GP+G+VT+L A+A GA
Sbjct: 138 DFCYKLPDSVTFEEGALIEPLSVGIYACRRGSVSLGNKVLVCGAGPVGMVTLLVAKAMGA 197

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFN 179
            ++V+ D+   RL+ AK++GAD  ++V     Q+IA +VE +   +G+  +V+ +C G  
Sbjct: 198 AQVVVTDLSASRLTKAKEVGADFTIQVGKETPQEIASKVESL---LGSKPEVTIECTGAE 254

Query: 180 KTMSTALSATRAGGKVCLVGMGHREMTVPLTPAA 213
            ++ T + AT +GG + +VGMG   + +PL  AA
Sbjct: 255 SSVQTGIYATHSGGTLVIVGMGAEMVNLPLVHAA 288

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q86ZV0|XYL2_ASPOR D-xylulose reductase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=xdhA PE=3 SV=2

 Score =  176 bits (447), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 91/214 (42%), Positives = 128/214 (59%), Gaps = 4/214 (1%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           KVGS V TL  GD VA+EPGI C +C+ CK G+YNLC +     +PP  G LA   V P 
Sbjct: 80  KVGSAVTTLKVGDHVAMEPGIPCRRCEPCKEGKYNLCEKMAFAATPPYDGTLAKYYVLPE 139

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
           D C+KLP+N++L+E A+ EPLSV VH  ++AN+ P  +V++ G+GP+GL+    ARAFG+
Sbjct: 140 DFCYKLPENINLQEAAVMEPLSVAVHIVKQANVAPGQSVVVFGAGPVGLLCCAVARAFGS 199

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKI--QKAMGTGIDVSFDCAGF 178
           P+++ VD+   RL  AKK  A  I + S       E  E+I  +  +G G D+  D +G 
Sbjct: 200 PKVIAVDIQKGRLEFAKKYAATAIFEPSK--VSALENAERIVNENDLGRGADIVIDASGA 257

Query: 179 NKTMSTALSATRAGGKVCLVGMGHREMTVPLTPA 212
             ++ T +   R GG     GMG  E+T P+  A
Sbjct: 258 EPSVHTGIHVLRPGGTYVQGGMGRNEITFPIMAA 291

Xylitol dehydrogenase which catalyzes the conversion of xylitol to D-xylulose. Xylose is a major component of hemicelluloses such as xylan. Most fungi utilize D-xylose via three enzymatic reactions, xylose reductase (XR), xylitol dehydrogenase (XDH), and xylulokinase, to form xylulose 5-phosphate, which enters pentose phosphate pathway.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|Q4WAU7|XYL2_ASPFU Probable D-xylulose reductase A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=xdhA PE=3 SV=2

 Score =  173 bits (439), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 90/213 (42%), Positives = 127/213 (59%), Gaps = 2/213 (0%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           KVGS V  L  GDRVA+EPGI C +C+ CK G+YNLC +     +PP  G LA   V P 
Sbjct: 80  KVGSAVTGLKVGDRVAMEPGIPCRRCEPCKAGKYNLCEKMAFAATPPYDGTLAKFYVLPE 139

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
           D C+KLPDN+SL+EGA+ EPL V VH  ++A++ P  +V++ G+GP+GL+    A+AFGA
Sbjct: 140 DFCYKLPDNISLQEGALMEPLGVAVHIVKQASVTPGQSVIVFGAGPVGLLCCAVAKAFGA 199

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVK-VSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFN 179
            +I+ VD+   RL  AKK  A +  +    +  D A+ + K +  +G G DV  D +G  
Sbjct: 200 AKIIAVDIQKARLDFAKKYAATSTFEPAKVSAVDNADRLRK-ENNLGVGADVVIDASGAE 258

Query: 180 KTMSTALSATRAGGKVCLVGMGHREMTVPLTPA 212
            ++ T +   R GG     GMG  E+  P+  A
Sbjct: 259 PSVHTGIHVLRPGGTYVQGGMGRSEIMFPIMAA 291

Xylitol dehydrogenase which catalyzes the conversion of xylitol to D-xylulose. Xylose is a major component of hemicelluloses such as xylan. Most fungi utilize D-xylose via three enzymatic reactions, xylose reductase (XR), xylitol dehydrogenase (XDH), and xylulokinase, to form xylulose 5-phosphate, which enters pentose phosphate pathway.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
224120122	364	predicted protein [Populus trichocarpa]	0.990	0.587	0.855	1e-104
255539581	364	alcohol dehydrogenase, putative [Ricinus	0.986	0.585	0.863	1e-104
350538545	355	sorbitol related enzyme [Solanum lycoper	0.990	0.602	0.845	1e-104
358345351	362	L-idonate 5-dehydrogenase [Medicago trun	0.990	0.591	0.827	1e-103
358345353	317	L-idonate 5-dehydrogenase [Medicago trun	0.990	0.675	0.827	1e-103
358248648	364	uncharacterized protein LOC100791559 [Gl	0.990	0.587	0.845	1e-103
147774828	346	hypothetical protein VITISV_036540 [Viti	0.990	0.618	0.850	1e-103
225469310	365	PREDICTED: L-idonate 5-dehydrogenase [Vi	0.990	0.586	0.850	1e-102
217072128	362	unknown [Medicago truncatula] gi|3885198	0.990	0.591	0.822	1e-102
356559880	364	PREDICTED: L-idonate 5-dehydrogenase-lik	0.990	0.587	0.831	1e-102

>gi|224120122|ref|XP_002318247.1| predicted protein [Populus trichocarpa] gi|222858920|gb|EEE96467.1| predicted protein [Populus trichocarpa]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/214 (85%), Positives = 198/214 (92%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VGSE+K+LVPGDRVALEPGISCW+C  CK GRYNLCP+ K   +PPVHG LANQVVHPA
Sbjct: 87  EVGSEIKSLVPGDRVALEPGISCWRCYLCKEGRYNLCPDMKFFATPPVHGSLANQVVHPA 146

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
           DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVL+MG+GPIGLVT+LAARAFGA
Sbjct: 147 DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLVMGAGPIGLVTLLAARAFGA 206

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
           PRIVIVDVDDYRLSVAK LGAD IVKVSTNLQD+ +EV  I +AMGTG+DV+FDCAGFNK
Sbjct: 207 PRIVIVDVDDYRLSVAKDLGADEIVKVSTNLQDVDQEVVLIHQAMGTGVDVTFDCAGFNK 266

Query: 181 TMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
           TMSTALSATR GGKVCL+GMGH EMTVPLTPAAA
Sbjct: 267 TMSTALSATRPGGKVCLIGMGHNEMTVPLTPAAA 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539581|ref|XP_002510855.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223549970|gb|EEF51457.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/213 (86%), Positives = 198/213 (92%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD 61
           VGSEVK LVPGDRVALEPGISCW+CD CK GRYNLCPE K   +PPVHG LANQVVHPAD
Sbjct: 88  VGSEVKNLVPGDRVALEPGISCWRCDLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPAD 147

Query: 62  LCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAP 121
           LCF+LP+NVSLEEGAMCEPLSVGVHACRRANIGPETNVL+MG+GPIGLVTMLAARAFGAP
Sbjct: 148 LCFRLPENVSLEEGAMCEPLSVGVHACRRANIGPETNVLVMGAGPIGLVTMLAARAFGAP 207

Query: 122 RIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKT 181
           RIVIVDVDDYRLSVAK LGAD IVKVST++QD+A+EV  I KAMGTG+DV+ DCAGFNKT
Sbjct: 208 RIVIVDVDDYRLSVAKDLGADAIVKVSTSIQDVADEVVLIHKAMGTGVDVTLDCAGFNKT 267

Query: 182 MSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
           MS+ALSATR+GGKVCLVGMGH EMTVPLTPAAA
Sbjct: 268 MSSALSATRSGGKVCLVGMGHNEMTVPLTPAAA 300

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350538545|ref|NP_001234092.1| sorbitol related enzyme [Solanum lycopersicum] gi|78183416|dbj|BAE47038.1| sorbitol related enzyme [Solanum lycopersicum]

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/214 (84%), Positives = 198/214 (92%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VG EVKTLVPGDRVALEPGISCW+C+ CK GRYNLCPE K   +PPVHG LANQVVHPA
Sbjct: 78  EVGGEVKTLVPGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPA 137

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
           DLCFKLPD++SLEEGAMCEPLSVGVHACRRAN+GPETN+L++G+GPIGLVT+LAARAFGA
Sbjct: 138 DLCFKLPDDISLEEGAMCEPLSVGVHACRRANVGPETNILVLGAGPIGLVTLLAARAFGA 197

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
           PRIVIVDVDDYRLSVAKKLGAD+IVKVS N+QD+A ++E IQKAMG GID SFDCAGFNK
Sbjct: 198 PRIVIVDVDDYRLSVAKKLGADDIVKVSINIQDVATDIENIQKAMGGGIDASFDCAGFNK 257

Query: 181 TMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
           TMSTAL ATR GGKVCLVGMGH EMTVPLTPAAA
Sbjct: 258 TMSTALGATRPGGKVCLVGMGHHEMTVPLTPAAA 291

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345351|ref|XP_003636744.1| L-idonate 5-dehydrogenase [Medicago truncatula] gi|355502679|gb|AES83882.1| L-idonate 5-dehydrogenase [Medicago truncatula]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/214 (82%), Positives = 201/214 (93%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VGS+VKTLVPGDRVA+EPGISCW+CD+CK GRYNLCP+ K   +PPVHG LANQ+VHPA
Sbjct: 85  EVGSQVKTLVPGDRVAIEPGISCWRCDHCKLGRYNLCPDMKFFATPPVHGSLANQIVHPA 144

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
           DLCFKLP+NVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMG+GPIGLVTML+ARAFGA
Sbjct: 145 DLCFKLPENVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLSARAFGA 204

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
           PRIV+VDVDD+RLSVAK LGAD+IVKVSTN+QD+AEEV++I   +G G+DV+FDCAGFNK
Sbjct: 205 PRIVVVDVDDHRLSVAKSLGADDIVKVSTNIQDVAEEVKQIHNVLGAGVDVTFDCAGFNK 264

Query: 181 TMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
           TM+TAL+AT+ GGKVCLVGMGH EMTVPLTPAAA
Sbjct: 265 TMTTALTATQPGGKVCLVGMGHSEMTVPLTPAAA 298

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345353|ref|XP_003636745.1| L-idonate 5-dehydrogenase [Medicago truncatula] gi|355502680|gb|AES83883.1| L-idonate 5-dehydrogenase [Medicago truncatula]

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/214 (82%), Positives = 201/214 (93%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VGS+VKTLVPGDRVA+EPGISCW+CD+CK GRYNLCP+ K   +PPVHG LANQ+VHPA
Sbjct: 40  EVGSQVKTLVPGDRVAIEPGISCWRCDHCKLGRYNLCPDMKFFATPPVHGSLANQIVHPA 99

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
           DLCFKLP+NVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMG+GPIGLVTML+ARAFGA
Sbjct: 100 DLCFKLPENVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLSARAFGA 159

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
           PRIV+VDVDD+RLSVAK LGAD+IVKVSTN+QD+AEEV++I   +G G+DV+FDCAGFNK
Sbjct: 160 PRIVVVDVDDHRLSVAKSLGADDIVKVSTNIQDVAEEVKQIHNVLGAGVDVTFDCAGFNK 219

Query: 181 TMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
           TM+TAL+AT+ GGKVCLVGMGH EMTVPLTPAAA
Sbjct: 220 TMTTALTATQPGGKVCLVGMGHSEMTVPLTPAAA 253

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248648|ref|NP_001239661.1| uncharacterized protein LOC100791559 [Glycine max] gi|255638941|gb|ACU19772.1| unknown [Glycine max]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/214 (84%), Positives = 198/214 (92%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VGS+VK+LVPGDRVA+EPGISCW+CD+CK GRYNLC + K   +PPVHG LANQ+VHPA
Sbjct: 87  EVGSQVKSLVPGDRVAIEPGISCWRCDHCKQGRYNLCDDMKFFATPPVHGSLANQIVHPA 146

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
           DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPET VLIMG+GPIGLVTMLAARAFGA
Sbjct: 147 DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETYVLIMGAGPIGLVTMLAARAFGA 206

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
           PR VIVDVDDYRLSVAK LGAD+IVKVSTN+QD+AEEV +IQK MG  IDV+FDCAGF+K
Sbjct: 207 PRTVIVDVDDYRLSVAKSLGADDIVKVSTNIQDVAEEVVQIQKVMGADIDVTFDCAGFDK 266

Query: 181 TMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
           TMSTALSAT+ GGKVCLVGMGH EMTVPLTPAAA
Sbjct: 267 TMSTALSATQPGGKVCLVGMGHSEMTVPLTPAAA 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774828|emb|CAN73444.1| hypothetical protein VITISV_036540 [Vitis vinifera]

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/214 (85%), Positives = 196/214 (91%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VG +VK+LVPGDRVALEPGISCW+C  CK GRYNLCPE K   +PPVHG LANQVVHPA
Sbjct: 69  EVGPQVKSLVPGDRVALEPGISCWRCQLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPA 128

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
           DLCFKLPDNVSLEEGAMCEPLSVGVHACRRA+IGPE+NVL+MG+GPIGLVTMLAARAFGA
Sbjct: 129 DLCFKLPDNVSLEEGAMCEPLSVGVHACRRADIGPESNVLVMGAGPIGLVTMLAARAFGA 188

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
           PRIVIVDVDDYRLSVAK LGAD IVKVSTN+QD+AEEV +I KAMG  +DVSFDCAGF+K
Sbjct: 189 PRIVIVDVDDYRLSVAKDLGADEIVKVSTNIQDVAEEVVQIHKAMGARVDVSFDCAGFDK 248

Query: 181 TMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
           TMSTALSAT  GGKVCLVGMGH EMTVPLTPAAA
Sbjct: 249 TMSTALSATSTGGKVCLVGMGHNEMTVPLTPAAA 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469310|ref|XP_002269895.1| PREDICTED: L-idonate 5-dehydrogenase [Vitis vinifera] gi|297741125|emb|CBI31856.3| unnamed protein product [Vitis vinifera]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/214 (85%), Positives = 196/214 (91%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VG +VK+LVPGDRVALEPGISCW+C  CK GRYNLCPE K   +PPVHG LANQVVHPA
Sbjct: 88  EVGPQVKSLVPGDRVALEPGISCWRCQLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPA 147

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
           DLCFKLPDNVSLEEGAMCEPLSVGVHACRRA+IGPE+NVL+MG+GPIGLVTMLAARAFGA
Sbjct: 148 DLCFKLPDNVSLEEGAMCEPLSVGVHACRRADIGPESNVLVMGAGPIGLVTMLAARAFGA 207

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
           PRIVIVDVDDYRLSVAK LGAD IVKVSTN+QD+AEEV +I KAMG  +DVSFDCAGF+K
Sbjct: 208 PRIVIVDVDDYRLSVAKDLGADEIVKVSTNIQDVAEEVVQIHKAMGARVDVSFDCAGFDK 267

Query: 181 TMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
           TMSTALSAT  GGKVCLVGMGH EMTVPLTPAAA
Sbjct: 268 TMSTALSATSTGGKVCLVGMGHNEMTVPLTPAAA 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072128|gb|ACJ84424.1| unknown [Medicago truncatula] gi|388519843|gb|AFK47983.1| unknown [Medicago truncatula]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/214 (82%), Positives = 200/214 (93%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           + GS+VKTLVPGDRVA+EPGISCW+CD+CK GRYNLCP+ K   +PPVHG LANQ+VHPA
Sbjct: 85  EAGSQVKTLVPGDRVAIEPGISCWRCDHCKLGRYNLCPDMKFFATPPVHGSLANQIVHPA 144

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
           DLCFKLP+NVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMG+GPIGLVTML+ARAFGA
Sbjct: 145 DLCFKLPENVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLSARAFGA 204

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
           PRIV+VDVDD+RLSVAK LGAD+IVKVSTN+QD+AEEV++I   +G G+DV+FDCAGFNK
Sbjct: 205 PRIVVVDVDDHRLSVAKSLGADDIVKVSTNIQDVAEEVKQIHNVLGAGVDVTFDCAGFNK 264

Query: 181 TMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
           TM+TAL+AT+ GGKVCLVGMGH EMTVPLTPAAA
Sbjct: 265 TMTTALTATQPGGKVCLVGMGHSEMTVPLTPAAA 298

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559880|ref|XP_003548224.1| PREDICTED: L-idonate 5-dehydrogenase-like [Glycine max]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/214 (83%), Positives = 199/214 (92%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VGS+VK+LVPGDRVA+EPGISCW C++CK GRYNLC + K   +PPVHG LANQ+VHPA
Sbjct: 87  EVGSQVKSLVPGDRVAIEPGISCWHCNHCKHGRYNLCDDMKFFATPPVHGSLANQIVHPA 146

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
           DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMG+GPIGLVTMLAARAFGA
Sbjct: 147 DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLAARAFGA 206

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
           P+ VIVDVDD+RLSVAK LGAD+I+KVSTN++D+AEEV +IQK MG GIDV+FDCAGF+K
Sbjct: 207 PKTVIVDVDDHRLSVAKSLGADDIIKVSTNIKDVAEEVVQIQKVMGAGIDVTFDCAGFDK 266

Query: 181 TMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
           TMSTALSAT+ GGKVCLVGMGH EMTVPLTPAAA
Sbjct: 267 TMSTALSATQPGGKVCLVGMGHSEMTVPLTPAAA 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
TAIR|locus:2173093	364	AT5G51970 [Arabidopsis thalian	0.990	0.587	0.808	1.1e-92
WB|WBGene00011003	347	R04B5.5 [Caenorhabditis elegan	0.976	0.608	0.481	3.8e-53
FB|FBgn0022359	360	Sodh-2 "Sorbitol dehydrogenase	0.986	0.591	0.514	3.5e-52
FB|FBgn0024289	360	Sodh-1 "Sorbitol dehydrogenase	0.986	0.591	0.504	1.5e-51
WB|WBGene00011004	347	R04B5.6 [Caenorhabditis elegan	0.958	0.596	0.471	9.5e-50
UNIPROTKB|Q58D31	356	SORD "Sorbitol dehydrogenase"	0.972	0.589	0.471	3e-46
UNIPROTKB|H0YLA4	336	SORD "Sorbitol dehydrogenase"	0.972	0.625	0.471	3.8e-46
UNIPROTKB|Q00796	357	SORD "Sorbitol dehydrogenase"	0.972	0.588	0.471	3.8e-46
UNIPROTKB|F1PXG0	356	SORD "Uncharacterized protein"	0.972	0.589	0.471	6.2e-46
UNIPROTKB|Q4R639	357	SORD "Sorbitol dehydrogenase"	0.972	0.588	0.462	7.9e-46

TAIR|locus:2173093 AT5G51970 [Arabidopsis thaliana (taxid:3702)]

 Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
 Identities = 173/214 (80%), Positives = 193/214 (90%)

Query:     1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
             +VG EVK LV GDRVALEPGISCW+C+ C+ GRYNLCPE K   +PPVHG LANQVVHPA
Sbjct:    87 EVGEEVKHLVVGDRVALEPGISCWRCNLCREGRYNLCPEMKFFATPPVHGSLANQVVHPA 146

Query:    61 DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
             DLCFKLP+NVSLEEGAMCEPLSVGVHACRRA +GPETNVL+MG+GPIGLVTMLAARAF  
Sbjct:   147 DLCFKLPENVSLEEGAMCEPLSVGVHACRRAEVGPETNVLVMGAGPIGLVTMLAARAFSV 206

Query:   121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
             PRIVIVDVD+ RL+VAK+LGAD IV+V+TNL+D+  EVE+IQKAMG+ IDV+FDCAGFNK
Sbjct:   207 PRIVIVDVDENRLAVAKQLGADEIVQVTTNLEDVGSEVEQIQKAMGSNIDVTFDCAGFNK 266

Query:   181 TMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
             TMSTAL+ATR GGKVCLVGMGH  MTVPLTPAAA
Sbjct:   267 TMSTALAATRCGGKVCLVGMGHGIMTVPLTPAAA 300

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

WB|WBGene00011003 R04B5.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 103/214 (48%), Positives = 148/214 (69%)

Query:     1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
             +VG+EVK L  GDR+A+EPG+ C  C++CK GRYNLCPE +   +PPVHG L+  VVH A
Sbjct:    74 EVGNEVKHLKVGDRIAMEPGLPCKLCEHCKTGRYNLCPEMRFFATPPVHGTLSRFVVHDA 133

Query:    61 DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
             D CFKLPDN+S E+GA+ EPLSV +HACRR N+     VL++G+GPIG++ ++ A+A GA
Sbjct:   134 DFCFKLPDNLSFEDGALIEPLSVAIHACRRGNVQMGHRVLVLGAGPIGVLNLITAKAVGA 193

Query:   121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGI-DVSFDCAGFN 179
              ++VI D+DD RL++AKKLGAD  + V     D  +   +I  A+G    DV  +C G  
Sbjct:   194 GKVVITDLDDGRLALAKKLGADATINVKGKSLDAVKS--EIITALGDQQPDVCIECTGAQ 251

Query:   180 KTMSTALSATRAGGKVCLVGMGHREMTVPLTPAA 213
              ++ TA++ T++GG + LVG+G   + +P+  +A
Sbjct:   252 PSIETAITTTKSGGVIVLVGLGADRVEIPIIESA 285

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

FB|FBgn0022359 Sodh-2 "Sorbitol dehydrogenase-2" [Drosophila melanogaster (taxid:7227)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 110/214 (51%), Positives = 142/214 (66%)

Query:     1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
             K+G +V TL  GDRVA+EPG+ C  CD+CK GRYNLC +     +PP  G L     H A
Sbjct:    74 KLGKKVTTLKVGDRVAIEPGVPCRYCDHCKQGRYNLCADMVFCATPPYDGNLTRYYKHAA 133

Query:    61 DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
             D CFKLPD+VS+EEGA+ EPLSVGVHACRRA +G  + VLI+G+GPIGLVT+LAA+A GA
Sbjct:   134 DFCFKLPDHVSMEEGALLEPLSVGVHACRRAGVGLGSKVLILGAGPIGLVTLLAAQAMGA 193

Query:   121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
               I+I D+   RL VAK+LGA + + +  + Q   E V+ + + M    D S DC G   
Sbjct:   194 SEILITDLVQQRLDVAKELGATHTLLLQRD-QSAEETVKVVHQTMSEVPDKSIDCCGAES 252

Query:   181 TMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
             +   A+ ATR+GG V +VGMG  E+ +PL  A A
Sbjct:   253 SARLAIFATRSGGVVVVVGMGAPEVKLPLINALA 286

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=ISS;TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0024289 Sodh-1 "Sorbitol dehydrogenase 1" [Drosophila melanogaster (taxid:7227)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 108/214 (50%), Positives = 142/214 (66%)

Query:     1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
             K+G +V TL  GDRVA+EPG+ C +CD+CK G+YNLCP      +PP  G L     H A
Sbjct:    74 KLGKKVTTLKVGDRVAIEPGVPCRKCDHCKQGKYNLCPGMVFCATPPYDGNLTRYYKHAA 133

Query:    61 DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
             D CFKLPD+V++EEGA+ EPLSVGVHAC+RA +   + VLI+G+GPIGLVT++AA+A GA
Sbjct:   134 DFCFKLPDHVTMEEGALLEPLSVGVHACKRAEVTLGSKVLILGAGPIGLVTLMAAQAMGA 193

Query:   121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
               I+I D+   RL VAK+LGA + + +  + Q   E    +QK MG   D S DC G   
Sbjct:   194 SEILITDLVQQRLDVAKELGATHTLLLKRD-QTAEETAVLVQKTMGGQPDKSIDCCGAES 252

Query:   181 TMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
             +   A+ ATR+GG V +VGMG  E+ +PL  A A
Sbjct:   253 SARLAIFATRSGGIVVVVGMGAAEIKLPLINALA 286

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=NAS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

WB|WBGene00011004 R04B5.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 99/210 (47%), Positives = 140/210 (66%)

Query:     1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
             ++GSEVK    GDR+A+EPG+ C  C++CK GRYNLCP+ +   +PPV+G L+  VVH A
Sbjct:    74 EIGSEVKGFKVGDRIAMEPGLPCKLCEHCKIGRYNLCPDMRFFATPPVNGALSRFVVHDA 133

Query:    61 DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
             D CFKLPDN+S E+GA+ EPLSV + ACRR  +     +L++G+GPIG++ +L A+A GA
Sbjct:   134 DFCFKLPDNLSFEDGALLEPLSVAIQACRRGTVQMGQKILVLGAGPIGVLNLLTAKAIGA 193

Query:   121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGID-VSFDCAGFN 179
              ++VI D++D RL++A+ LGAD  + V     D  E   +I KA G     VS +C G  
Sbjct:   194 SKVVITDLNDERLALARLLGADATINVMGKRSD--EVRSEIIKAFGDQQPHVSIECTGVQ 251

Query:   180 KTMSTALSATRAGGKVCLVGMGHREMTVPL 209
               + TA+  TR+GG V LVG+G   + +PL
Sbjct:   252 PCVETAIMTTRSGGVVVLVGLGAERVEIPL 281

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

UNIPROTKB|Q58D31 SORD "Sorbitol dehydrogenase" [Bos taurus (taxid:9913)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 101/214 (47%), Positives = 142/214 (66%)

Query:     1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
             KVGS V+ L PGDRVA+EPG      ++CK GRYNL P      +PP  G L     H A
Sbjct:    77 KVGSLVRHLQPGDRVAIEPGAPRETDEFCKIGRYNLSPTIFFCATPPDDGNLCRFYKHNA 136

Query:    61 DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
             + C+KLPDNV+ EEGA+ EPLSVG+HACRRA +     VL+ G+GPIGLV++LAA+A GA
Sbjct:   137 NFCYKLPDNVTFEEGALIEPLSVGIHACRRAGVTLGNKVLVCGAGPIGLVSLLAAKAMGA 196

Query:   121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFN 179
              ++V+ D+   RLS AK++GAD I+++S    Q+IA++VE +   +G+  +V+ +C G  
Sbjct:   197 AQVVVTDLSASRLSKAKEVGADFILQISNESPQEIAKKVEGL---LGSKPEVTIECTGVE 253

Query:   180 KTMSTALSATRAGGKVCLVGMGHREMTVPLTPAA 213
              ++   + AT +GG + LVG+G    +VPL  AA
Sbjct:   254 TSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAA 287

GO:0030317 "sperm motility" evidence=ISS

GO:0031514 "motile cilium" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0051160 "L-xylitol catabolic process" evidence=IEA

GO:0046370 "fructose biosynthetic process" evidence=IEA

GO:0006062 "sorbitol catabolic process" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|H0YLA4 SORD "Sorbitol dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 101/214 (47%), Positives = 137/214 (64%)

Query:     1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
             KVGS VK L PGDRVA+EPG      ++CK GRYNL P      +PP  G L     H A
Sbjct:    57 KVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNA 116

Query:    61 DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
               C+KLPDNV+ EEGA+ EPLSVG+HACRR  +     VL+ G+GPIG+VT+L A+A GA
Sbjct:   117 AFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGA 176

Query:   121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFN 179
              ++V+ D+   RLS AK++GAD ++++S    Q+IA +VE     +G   +V+ +C G  
Sbjct:   177 AQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEG---QLGCKPEVTIECTGAE 233

Query:   180 KTMSTALSATRAGGKVCLVGMGHREMTVPLTPAA 213
              ++   + ATR+GG + LVG+G    TVPL  AA
Sbjct:   234 ASIQAGIYATRSGGNLVLVGLGSEMTTVPLLHAA 267

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|Q00796 SORD "Sorbitol dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 101/214 (47%), Positives = 137/214 (64%)

Query:     1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
             KVGS VK L PGDRVA+EPG      ++CK GRYNL P      +PP  G L     H A
Sbjct:    78 KVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNA 137

Query:    61 DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
               C+KLPDNV+ EEGA+ EPLSVG+HACRR  +     VL+ G+GPIG+VT+L A+A GA
Sbjct:   138 AFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGA 197

Query:   121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFN 179
              ++V+ D+   RLS AK++GAD ++++S    Q+IA +VE     +G   +V+ +C G  
Sbjct:   198 AQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEG---QLGCKPEVTIECTGAE 254

Query:   180 KTMSTALSATRAGGKVCLVGMGHREMTVPLTPAA 213
              ++   + ATR+GG + LVG+G    TVPL  AA
Sbjct:   255 ASIQAGIYATRSGGNLVLVGLGSEMTTVPLLHAA 288

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=ISS;IDA

GO:0008270 "zinc ion binding" evidence=ISS;IDA

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0006062 "sorbitol catabolic process" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

GO:0030246 "carbohydrate binding" evidence=NAS

GO:0016020 "membrane" evidence=IDA

GO:0046370 "fructose biosynthetic process" evidence=IDA

GO:0051160 "L-xylitol catabolic process" evidence=IDA

GO:0051164 "L-xylitol metabolic process" evidence=IDA

GO:0005615 "extracellular space" evidence=TAS

GO:0030317 "sperm motility" evidence=ISS;NAS

GO:0031514 "motile cilium" evidence=ISS

UNIPROTKB|F1PXG0 SORD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 101/214 (47%), Positives = 139/214 (64%)

Query:     1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
             KVGS VK L  GDRVA+EPG      ++CK GRYNL P      +PP  G L     H A
Sbjct:    77 KVGSLVKHLKSGDRVAIEPGALREMDEFCKIGRYNLSPSIFFCATPPDDGNLCQFYKHNA 136

Query:    61 DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
             D C+KLPDNV+ EEGA+ EPLSVG+HACRRA I     VL+ G+GPIGLVT++ A+A GA
Sbjct:   137 DFCYKLPDNVTYEEGALIEPLSVGIHACRRAGITLGNKVLVCGAGPIGLVTLIVAKAMGA 196

Query:   121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFN 179
              ++++ D+   RLS AK++GAD ++++S    ++IA +VE +   +G   + + +C G  
Sbjct:   197 GQVLVTDLSASRLSKAKEVGADIVLQISKESPKEIASKVEDM---LGCKPEATIECTGVE 253

Query:   180 KTMSTALSATRAGGKVCLVGMGHREMTVPLTPAA 213
               + + + ATRAGG + LVG+G    TVPLT A+
Sbjct:   254 SAIQSGIYATRAGGTLVLVGLGSEMTTVPLTHAS 287

GO:0051287 "NAD binding" evidence=IEA

GO:0051160 "L-xylitol catabolic process" evidence=IEA

GO:0046370 "fructose biosynthetic process" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006062 "sorbitol catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q4R639 SORD "Sorbitol dehydrogenase" [Macaca fascicularis (taxid:9541)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 99/214 (46%), Positives = 139/214 (64%)

Query:     1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
             KVGS VK L PGDRVA+EPG+     ++CK GRYNL P      +PP  G L     H A
Sbjct:    78 KVGSLVKHLKPGDRVAIEPGVPRENDEFCKSGRYNLSPSIFFCATPPDDGNLCRFYKHNA 137

Query:    61 DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
               C+KLPDNV+ EEGA+ EPLSVG+HACRR  +     VL+ G+GPIG+V++L A+A GA
Sbjct:   138 AFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHRVLVCGAGPIGVVSLLVAKAMGA 197

Query:   121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFN 179
              ++V+ D+   RLS AK++GAD ++++S    Q+IA +VE +   +G   +V+ +C G  
Sbjct:   198 AQVVVTDLSAPRLSKAKEIGADLVLQISKESPQEIAGKVEGL---LGCKPEVTIECTGAE 254

Query:   180 KTMSTALSATRAGGKVCLVGMGHREMTVPLTPAA 213
              ++   + ATR+GG + LVG+G    T+PL  AA
Sbjct:   255 ASIQAGIYATRSGGTLVLVGLGSEMTTIPLLHAA 288

GO:0030317 "sperm motility" evidence=ISS

GO:0031514 "motile cilium" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XII1187	L-iditol 2-dehydrogenase (EC-1.1.1.14) (364 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_XVIII2895	xylose isomerase (EC-5.3.1.5) (477 aa)						•	•		0.919
	gw1.125.171.1	fructokinase (EC-2.7.1.4) (320 aa)	•					•			0.901
	eugene3.00070163	fructokinase (EC-2.7.1.4) (329 aa)	•					•			0.900
	gw1.II.2365.1	fructokinase (EC-2.7.1.4) (337 aa)						•			0.899
	gw1.8434.3.1	annotation not avaliable (125 aa)						•			0.899
	fgenesh4_pm.C_LG_IV000247	fructokinase (EC-2.7.1.4) (351 aa)						•			0.899
	fgenesh4_pm.C_LG_I000617	hexokinase (508 aa)						•			0.899
	fgenesh4_pg.C_LG_VII001238	hexokinase (EC-2.7.1.2) (502 aa)						•			0.899
	fgenesh4_pg.C_LG_IX001086	hexokinase (508 aa)						•			0.899
	eugene3.00151131	SubName- Full=Putative uncharacterized protein; (350 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	216
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	1e-152
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	1e-110
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	5e-60
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	1e-59
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	6e-57
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	4e-54
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	4e-54
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	1e-49
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	1e-49
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	1e-47
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	2e-47
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	1e-42
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	3e-42
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	8e-38
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	1e-37
cd05281	341	cd05281, TDH, Threonine dehydrogenase	2e-36
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	8e-35
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	9e-35
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	1e-33
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	2e-33
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	4e-33
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	1e-32
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	1e-31
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	5e-31
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	7e-30
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	9e-30
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	3e-29
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	5e-29
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	6e-29
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	9e-29
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	1e-28
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	2e-28
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	4e-28
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	3e-27
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	2e-26
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	5e-26
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	2e-24
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	7e-24
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	1e-23
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	9e-23
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	1e-22
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	5e-22
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	5e-22
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	7e-22
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	1e-21
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	7e-21
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	1e-20
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	3e-20
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	1e-19
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	3e-19
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	3e-19
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	2e-18
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	2e-18
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	4e-18
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	7e-18
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	5e-17
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	2e-16
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	2e-16
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	8e-16
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	1e-15
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	2e-15
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	3e-15
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	4e-14
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	1e-13
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	2e-13
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	3e-13
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	7e-13
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	9e-13
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	3e-12
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	3e-12
TIGR02819	393	TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas	4e-12
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	6e-12
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	7e-12
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	2e-11
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	8e-11
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	1e-10
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	5e-10
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	5e-10
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	3e-09
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	5e-09
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	2e-08
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	3e-08
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	4e-08
cd08237	341	cd08237, ribitol-5-phosphate_DH, ribitol-5-phospha	5e-08
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	1e-07
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	3e-07
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	3e-07
smart00829	287	smart00829, PKS_ER, Enoylreductase	3e-07
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	6e-05
TIGR02822	329	TIGR02822, adh_fam_2, zinc-binding alcohol dehydro	6e-05
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	1e-04
cd08238	410	cd08238, sorbose_phosphate_red, L-sorbose-1-phosph	1e-04
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	2e-04
PRK10754	327	PRK10754, PRK10754, quinone oxidoreductase, NADPH-	9e-04
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	0.001
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	0.002

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score =  426 bits (1096), Expect = e-152
 Identities = 184/213 (86%), Positives = 195/213 (91%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD 61
           VGSEVK LV GDRVALEPGISCW+C+ CK GRYNLCPE K   +PPVHG LANQVVHPAD
Sbjct: 88  VGSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPAD 147

Query: 62  LCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAP 121
           LCFKLP+NVSLEEGAMCEPLSVGVHACRRANIGPETNVL+MG+GPIGLVTMLAARAFGAP
Sbjct: 148 LCFKLPENVSLEEGAMCEPLSVGVHACRRANIGPETNVLVMGAGPIGLVTMLAARAFGAP 207

Query: 122 RIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKT 181
           RIVIVDVDD RLSVAK+LGAD IV VSTN++D+  EVE+IQKAMG GIDVSFDC GFNKT
Sbjct: 208 RIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSFDCVGFNKT 267

Query: 182 MSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
           MSTAL ATRAGGKVCLVGMGH EMTVPLTPAAA
Sbjct: 268 MSTALEATRAGGKVCLVGMGHNEMTVPLTPAAA 300

Length = 364

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score =  319 bits (821), Expect = e-110
 Identities = 117/215 (54%), Positives = 146/215 (67%), Gaps = 3/215 (1%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            VGS V  L  GDRVA+EPG+ C  C++CK GRYNLCP+ +   +PPV G L   V HPA
Sbjct: 68  AVGSGVTHLKVGDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPA 127

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
           D C KLPDNVSLEEGA+ EPLSVGVHACRRA + P   VL+ G+GPIGL+T   A+AFGA
Sbjct: 128 DFCHKLPDNVSLEEGALVEPLSVGVHACRRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGA 187

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGT-GIDVSFDCAGFN 179
            ++V+ D+D  RL  AK+LGA + V V T  +D  E  EKI + +G  G DV  +C G  
Sbjct: 188 TKVVVTDIDPSRLEFAKELGATHTVNVRT--EDTPESAEKIAELLGGKGPDVVIECTGAE 245

Query: 180 KTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
             + TA+ ATR GG V LVGMG  E+T+PL+ A+ 
Sbjct: 246 SCIQTAIYATRPGGTVVLVGMGKPEVTLPLSAASL 280

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score =  191 bits (487), Expect = 5e-60
 Identities = 88/202 (43%), Positives = 116/202 (57%), Gaps = 8/202 (3%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE--SKGLGSPPVHGCLANQVVH 58
           +VGS V     GDRV +EP I C  C  CK G YNLC      GLG     G  A  VV 
Sbjct: 78  EVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGG--GGGFAEYVVV 135

Query: 59  PADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAF 118
           PA    KLPDNV LEE A+ EPL+V  HA RR+   P    L++G+GPIGL+T+LA +A 
Sbjct: 136 PAYHVHKLPDNVPLEEAALVEPLAVAWHAVRRSGFKPGDTALVLGAGPIGLLTILALKAA 195

Query: 119 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGF 178
           GA +I++ +  + R  +A++LGA  ++  +    D+  EV K+    G G+DVSFDCAG 
Sbjct: 196 GASKIIVSEPSEARRELAEELGATIVLDPTE--VDVVAEVRKLTG--GGGVDVSFDCAGV 251

Query: 179 NKTMSTALSATRAGGKVCLVGM 200
             T+ TA+ A R  G    V +
Sbjct: 252 QATLDTAIDALRPRGTAVNVAI 273

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score =  190 bits (485), Expect = 1e-59
 Identities = 84/209 (40%), Positives = 124/209 (59%), Gaps = 8/209 (3%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VGS V  L  GDRVA+ P + C +C+YCK G Y+LC     +GS    G  A  V  PA
Sbjct: 66  EVGSGVDDLAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSR-RDGAFAEYVSVPA 124

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
               K+PD+V  EE AM EP +V +HA R A I     V+++G+G IGL+ +   +  GA
Sbjct: 125 RNLIKIPDHVDYEEAAMIEPAAVALHAVRLAGITLGDTVVVIGAGTIGLLAIQWLKILGA 184

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAM-GTGIDVSFDCAGFN 179
            R++ VD+DD +L+VA++LGAD+ +          E+VEK+++   G G D+  + AG  
Sbjct: 185 KRVIAVDIDDEKLAVARELGADDTINPKE------EDVEKVRELTEGRGADLVIEAAGSP 238

Query: 180 KTMSTALSATRAGGKVCLVGMGHREMTVP 208
            T+  AL+  R GGKV LVG+ + ++T+ 
Sbjct: 239 ATIEQALALARPGGKVVLVGIPYGDVTLS 267

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score =  183 bits (467), Expect = 6e-57
 Identities = 72/208 (34%), Positives = 101/208 (48%), Gaps = 9/208 (4%)

Query: 5   EVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGS----PPVHGCLANQVVHPA 60
            V+    GDRV +EP I C  C YC+ G YNLC      G       + G  A  V  PA
Sbjct: 72  VVRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPA 131

Query: 61  D-LCFKLPDNVSLEEGAMCEPLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAF 118
           D    KLPD +  E  A+ EPL+   H    RA + P   V+++G+GPIGL+ +  A+  
Sbjct: 132 DFNLAKLPDGIDEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLL 191

Query: 119 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGF 178
           GA  +++VD    RL +AK+ G  ++V    N  +     E ++   G G DV  +  G 
Sbjct: 192 GASVVIVVDRSPERLELAKEAGGADVV---VNPSEDDAGAEILELTGGRGADVVIEAVGS 248

Query: 179 NKTMSTALSATRAGGKVCLVGMGHREMT 206
              +  AL A R GG V +VG+   E  
Sbjct: 249 PPALDQALEALRPGGTVVVVGVYGGEDI 276

Length = 350

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score =  175 bits (447), Expect = 4e-54
 Identities = 83/215 (38%), Positives = 109/215 (50%), Gaps = 11/215 (5%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGS----PPVHGCLANQV 56
            VG  V  L PG RVA+ P   C  CDYC+ GR NLC   + LGS    P V G     +
Sbjct: 67  AVGPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYL 126

Query: 57  VHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAAR 116
           V  A  C  LPD +SL   A+ EPL+V +HA  RA       VL+ G+GPIG + + AAR
Sbjct: 127 VVDASQCVPLPDGLSLRRAALAEPLAVALHAVNRAGDLAGKRVLVTGAGPIGALVVAAAR 186

Query: 117 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA 176
             GA  IV  D+ D  L+VA+ +GAD  V       ++A +      A     DV F+ +
Sbjct: 187 RAGAAEIVATDLADAPLAVARAMGADETV-------NLARDPLAAYAADKGDFDVVFEAS 239

Query: 177 GFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTP 211
           G    +++AL   R GG V  VGM    + +PL  
Sbjct: 240 GAPAALASALRVVRPGGTVVQVGMLGGPVPLPLNA 274

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score =  175 bits (446), Expect = 4e-54
 Identities = 78/211 (36%), Positives = 112/211 (53%), Gaps = 7/211 (3%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            VGS+V     GDRVA++P I C +C YC+ GR NLC     +G    +G  A  VV PA
Sbjct: 66  AVGSKVTGFKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVT-RNGGFAEYVVVPA 124

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
              +K+PDN+S EE A+ EPLS  VH      I P  +VL+ G+GPIGL+     +  GA
Sbjct: 125 KQVYKIPDNLSFEEAALAEPLSCAVHGLDLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGA 184

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
            R+ + + ++ +L +AKKLGA   V          E+ E  ++    G DV  +  G  K
Sbjct: 185 SRVTVAEPNEEKLELAKKLGATETV------DPSREDPEAQKEDNPYGFDVVIEATGVPK 238

Query: 181 TMSTALSATRAGGKVCLVGMGHREMTVPLTP 211
           T+  A+   R GG V + G+   +  V ++P
Sbjct: 239 TLEQAIEYARRGGTVLVFGVYAPDARVSISP 269

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score =  164 bits (417), Expect = 1e-49
 Identities = 77/204 (37%), Positives = 113/204 (55%), Gaps = 10/204 (4%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VG  V     GDRV + P + C +C YC  G  N+CP  K  G+    G  A  V  PA
Sbjct: 67  EVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNL-YDGGFAEYVRVPA 125

Query: 61  -----DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAA 115
                    KLPDNVS EE A+ EPL+  ++A R+A I P   VL++G+GPIGL+  + A
Sbjct: 126 WAVKRGGVLKLPDNVSFEEAALVEPLACCINAQRKAGIKPGDTVLVIGAGPIGLLHAMLA 185

Query: 116 RAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC 175
           +A GA ++++ D++++RL  AKKLGAD  +  +   +D+ E+V ++    G G DV    
Sbjct: 186 KASGARKVIVSDLNEFRLEFAKKLGADYTIDAAE--EDLVEKVRELTD--GRGADVVIVA 241

Query: 176 AGFNKTMSTALSATRAGGKVCLVG 199
            G  +  + AL   R GG++   G
Sbjct: 242 TGSPEAQAQALELVRKGGRILFFG 265

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  162 bits (411), Expect = 1e-49
 Identities = 71/213 (33%), Positives = 108/213 (50%), Gaps = 13/213 (6%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VG  V  +  GDRV + P + C  C+ C+           G+    + G  A  VV PA
Sbjct: 43  EVGPGVTGVKVGDRVVVLPNLGCGTCELCRE-----LCPGGGILGEGLDGGFAEYVVVPA 97

Query: 61  DLCFKLPDNVSLEEGAM-CEPLSVGVHACRRAN-IGPETNVLIMGSGPIGLVTMLAARAF 118
           D    LPD +SLEE A+  EPL+   HA RRA  + P   VL++G+G +GL+    A+A 
Sbjct: 98  DNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAA 157

Query: 119 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGF 178
           GA R+++ D  D +L +AK+LGAD+++             E+++   G G DV  D  G 
Sbjct: 158 GA-RVIVTDRSDEKLELAKELGADHVIDYKEED-----LEEELRLTGGGGADVVIDAVGG 211

Query: 179 NKTMSTALSATRAGGKVCLVGMGHREMTVPLTP 211
            +T++ AL   R GG++ +VG       +    
Sbjct: 212 PETLAQALRLLRPGGRIVVVGGTSGGPPLDDLR 244

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score =  158 bits (401), Expect = 1e-47
 Identities = 83/204 (40%), Positives = 116/204 (56%), Gaps = 11/204 (5%)

Query: 2   VGSEVKTLVPGDRVALEP-GISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           VG +V+    GDRV  E    +C +C YC+ G YNLCP  KG+G+    G  A  V+ P 
Sbjct: 70  VGPDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQ-ADGGFAEYVLVPE 128

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFG 119
           +   +LP+N+SLE  A+ EPL+V VHA   R+ I P   V++ G GPIGL+    A+  G
Sbjct: 129 ESLHELPENLSLEAAALTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQG 188

Query: 120 APRIVIVDV--DDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG 177
           A  +V+V    D+ RL VAK+LGAD    V+   +D+AE V +I    G G DV  +C+G
Sbjct: 189 A-TVVVVGTEKDEVRLDVAKELGAD---AVNGGEEDLAELVNEITD--GDGADVVIECSG 242

Query: 178 FNKTMSTALSATRAGGKVCLVGMG 201
               +  AL   R GG++  VG+ 
Sbjct: 243 AVPALEQALELLRKGGRIVQVGIF 266

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score =  158 bits (402), Expect = 2e-47
 Identities = 84/210 (40%), Positives = 123/210 (58%), Gaps = 11/210 (5%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVH--GCLANQVVH 58
           +VG  V  L  GDRV ++P ISC +C  C+ GR N C   + LG   VH  G  A  +V 
Sbjct: 67  EVGEGVAGLKVGDRVVVDPYISCGECYACRKGRPNCCENLQVLG---VHRDGGFAEYIVV 123

Query: 59  PADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAF 118
           PAD    +P+ +SL++ A+ EPL++G HA RRA +     VL++G+GPIGL  +  A+A 
Sbjct: 124 PAD-ALLVPEGLSLDQAALVEPLAIGAHAVRRAGVTAGDTVLVVGAGPIGLGVIQVAKAR 182

Query: 119 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGF 178
           GA R+++VD+DD RL  A++LGAD+ + V    +D+A  + ++    G G DV  D  G 
Sbjct: 183 GA-RVIVVDIDDERLEFARELGADDTINVGD--EDVAARLREL--TDGEGADVVIDATGN 237

Query: 179 NKTMSTALSATRAGGKVCLVGMGHREMTVP 208
             +M  A+     GG+V LVG+    +T P
Sbjct: 238 PASMEEAVELVAHGGRVVLVGLSKGPVTFP 267

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score =  146 bits (370), Expect = 1e-42
 Identities = 70/208 (33%), Positives = 112/208 (53%), Gaps = 10/208 (4%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVH--GCLANQVVHP 59
           VGSEV     GDRV+ E  I C  C  C+ GR +LC  +KG+G   V+  G  A  +V P
Sbjct: 72  VGSEVTGFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVG---VNRPGAFAEYLVIP 128

Query: 60  ADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFG 119
           A   +K+PD++  +  A+ +P    VH     ++  E  VLI G+GPIG++    A+  G
Sbjct: 129 AFNVWKIPDDIPDDLAAIFDPFGNAVHTALSFDLVGED-VLITGAGPIGIMAAAVAKHVG 187

Query: 120 APRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFN 179
           A  +VI DV++YRL +A+K+GA   V V+   +D+ + + ++   M  G DV  + +G  
Sbjct: 188 ARHVVITDVNEYRLELARKMGATRAVNVAK--EDLRDVMAEL--GMTEGFDVGLEMSGAP 243

Query: 180 KTMSTALSATRAGGKVCLVGMGHREMTV 207
                 L     GG++ ++G+   +M +
Sbjct: 244 SAFRQMLDNMNHGGRIAMLGIPPGDMAI 271

Length = 341

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score =  145 bits (367), Expect = 3e-42
 Identities = 70/207 (33%), Positives = 106/207 (51%), Gaps = 13/207 (6%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC----PESKGLGSPPVHGCLANQV 56
           +VGS+VK L PGDRV++     C +C +C+ G +  C       K        G  A  V
Sbjct: 68  EVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRID--GGQAEYV 125

Query: 57  VHP-ADL-CFKLPDNVSLEEGAMC-EPLSVGVHACRRANIGPETNVLIMGSGPIGLVTML 113
             P AD+   K+PD +  E+  M  + L  G H    A I P + V ++G+GP+GL  + 
Sbjct: 126 RVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGAELAGIKPGSTVAVIGAGPVGLCAVA 185

Query: 114 AARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF 173
            AR  GA RI+ VD +  RL +AK+ GA +I  ++    DI E++ ++    G G+D   
Sbjct: 186 GARLLGAARIIAVDSNPERLDLAKEAGATDI--INPKNGDIVEQILELTG--GRGVDCVI 241

Query: 174 DCAGFNKTMSTALSATRAGGKVCLVGM 200
           +  GF +T   A+   R GG +  VG+
Sbjct: 242 EAVGFEETFEQAVKVVRPGGTIANVGV 268

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score =  133 bits (336), Expect = 8e-38
 Identities = 70/209 (33%), Positives = 114/209 (54%), Gaps = 6/209 (2%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD 61
           +G  V+ +  GD V++E  I C +C  C+ G+Y++C  +K  G     GC A   V PA 
Sbjct: 70  IGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVD-TDGCFAEYAVVPAQ 128

Query: 62  LCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAP 121
             +K P ++  E   + EPL   VH      I  ++ VL+ G+GPIGL+ +  A+A GA 
Sbjct: 129 NIWKNPKSIPPEYATIQEPLGNAVHTVLAGPISGKS-VLVTGAGPIGLMAIAVAKASGAY 187

Query: 122 RIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKT 181
            +++ D ++YRL +AKK+GA  +V      +D+ +EV  +    G G+DV  + +G  K 
Sbjct: 188 PVIVSDPNEYRLELAKKMGATYVVNPFK--EDVVKEVADL--TDGEGVDVFLEMSGAPKA 243

Query: 182 MSTALSATRAGGKVCLVGMGHREMTVPLT 210
           +   L A   GG+V L+G+   ++T+  T
Sbjct: 244 LEQGLQAVTPGGRVSLLGLPPGKVTIDFT 272

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score =  132 bits (335), Expect = 1e-37
 Identities = 74/214 (34%), Positives = 108/214 (50%), Gaps = 13/214 (6%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPES--KGLGSPPVHGCLANQVVH 58
           +VG+ V     GDRVA+   I C  C  C+ GR NLC      GLG     G  A  +V 
Sbjct: 70  EVGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGI---DGGFAEYIVV 126

Query: 59  PADLCFKLPDNVSLEEGA-MCEPLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAAR 116
           PA     +PD V   + A   + +    HA  R   + P   VL++G G +GL  +  A+
Sbjct: 127 PARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAK 186

Query: 117 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA 176
           A GA  ++ VD+ + +L +AK+LGAD   +V  +L D     +K    +G G DV FD  
Sbjct: 187 AMGA-AVIAVDIKEEKLELAKELGAD---EVLNSLDDSP--KDKKAAGLGGGFDVIFDFV 240

Query: 177 GFNKTMSTALSATRAGGKVCLVGMGHREMTVPLT 210
           G   T   A  A + GG++ +VG+G  ++TV L+
Sbjct: 241 GTQPTFEDAQKAVKPGGRIVVVGLGRDKLTVDLS 274

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score =  129 bits (327), Expect = 2e-36
 Identities = 71/212 (33%), Positives = 112/212 (52%), Gaps = 11/212 (5%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVH--GCLANQVVH 58
           +VG  V  +  GD V+ E  I C +C  C+ G Y++C  +K LG   V   GC A  VV 
Sbjct: 71  EVGEGVTRVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILG---VDTDGCFAEYVVV 127

Query: 59  PADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAF 118
           P +  +K   ++  E  ++ EPL   VH     ++    +VLI G GPIGL+ +  A+A 
Sbjct: 128 PEENLWKNDKDIPPEIASIQEPLGNAVHTVLAGDV-SGKSVLITGCGPIGLMAIAVAKAA 186

Query: 119 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGF 178
           GA  ++  D + YRL +AKK+GAD ++      +D+  EV+ +    GTG+DV  + +G 
Sbjct: 187 GASLVIASDPNPYRLELAKKMGADVVINPRE--EDVV-EVKSVTD--GTGVDVVLEMSGN 241

Query: 179 NKTMSTALSATRAGGKVCLVGMGHREMTVPLT 210
            K +   L A   GG+V ++G+    + + L 
Sbjct: 242 PKAIEQGLKALTPGGRVSILGLPPGPVDIDLN 273

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score =  125 bits (317), Expect = 8e-35
 Identities = 78/220 (35%), Positives = 107/220 (48%), Gaps = 14/220 (6%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKG---LGSPPVHGCLANQVVH 58
           VG EV+TL  GDRV     I+C +C YC+ G+   C +       GSP + G  A  V  
Sbjct: 68  VGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRV 127

Query: 59  P-ADL-CFKLPDNVSLEEG-AMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAA 115
           P AD    KLPD +S E    + + L  G    +RA + P   V ++G GP+GL  +L+A
Sbjct: 128 PFADGTLLKLPDGLSDEAALLLGDILPTGYFGAKRAQVRPGDTVAVIGCGPVGLCAVLSA 187

Query: 116 RAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAM-GTGIDVSFD 174
           +  GA R+  VD    RL  A  LGA+ I     N +D AE VE++++A  G G DV  +
Sbjct: 188 QVLGAARVFAVDPVPERLERAAALGAEPI-----NFED-AEPVERVREATEGRGADVVLE 241

Query: 175 CAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
             G    +  A    R GG +  VG+   E   P     A
Sbjct: 242 AVGGAAALDLAFDLVRPGGVISSVGVHTAE-EFPFPGLDA 280

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score =  125 bits (316), Expect = 9e-35
 Identities = 68/205 (33%), Positives = 100/205 (48%), Gaps = 12/205 (5%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            VG  V     GDRV +   + C  C  C+ G   LC   +        G  A  ++ P 
Sbjct: 68  AVGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPE 127

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGV----HACRRANIGPETNVLIMGSGPIGLVTMLAAR 116
                LPD++S  +GA+   L  G+    HA RR  +     VL++G+GP+GL  ++ AR
Sbjct: 128 KTLIPLPDDLSFADGAL---LLCGIGTAYHALRRVGVSGRDTVLVVGAGPVGLGALMLAR 184

Query: 117 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA 176
           A GA  ++ VD    RL +AK LGAD ++      QD  +E+ ++    G G DV+ +C+
Sbjct: 185 ALGAEDVIGVDPSPERLELAKALGADFVINS---GQDDVQEIRELTS--GAGADVAIECS 239

Query: 177 GFNKTMSTALSATRAGGKVCLVGMG 201
           G       AL A R  G++ LVG G
Sbjct: 240 GNTAARRLALEAVRPWGRLVLVGEG 264

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score =  123 bits (310), Expect = 1e-33
 Identities = 71/235 (30%), Positives = 99/235 (42%), Gaps = 31/235 (13%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVH----------- 49
           +VG  V  + PGD V L    +C  C YC  G+ NLC    G+    +            
Sbjct: 67  EVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGE 126

Query: 50  --------GCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGV-----HACRRANIGPE 96
                   G  A   V P     K+ D++ L+  A+   L  GV          A + P 
Sbjct: 127 PVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAAL---LGCGVTTGVGAVVNTARVRPG 183

Query: 97  TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAE 156
             V ++G G +GL  +  AR  GA RI+ VD    +L +A++ GA + V  S    D  E
Sbjct: 184 DTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASE--DDAVE 241

Query: 157 EVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTP 211
            V  +    G G D +F+  G   T+  AL+ TR GG   +VGMG    TV L  
Sbjct: 242 AVRDLTD--GRGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPPGETVSLPA 294

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  122 bits (308), Expect = 2e-33
 Identities = 73/216 (33%), Positives = 111/216 (51%), Gaps = 22/216 (10%)

Query: 1   KVGSEVKTLVPGDRVALE-PGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHP 59
           +VG  V  L  GDRV +    ISC +C+YC+ G  NLCP  K  G     G  A  VV P
Sbjct: 71  EVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGY-TTDGGYAEYVVVP 129

Query: 60  ADLCFKLPDNVSLEEGAMCEPLS-VGV---HACRRANIGPETNVLIMGSGPIGLVTMLAA 115
           A    K+P+ + L E A   PL   G+    A ++AN+ P   V ++G+G +G + +  A
Sbjct: 130 ARYVVKIPEGLDLAEAA---PLLCAGITTYRALKKANVKPGKWVAVVGAGGLGHMAVQYA 186

Query: 116 RAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC 175
           +A GA  ++ +   + +L +AKKLGAD++  ++++  D  E V++I        D   D 
Sbjct: 187 KAMGA-EVIAITRSEEKLELAKKLGADHV--INSSDSDALEAVKEI-------ADAIIDT 236

Query: 176 AGFNKTMSTALSATRAGGKVCLVGM--GHREMTVPL 209
            G   T+  +L A R GG + LVG+  G     +P 
Sbjct: 237 VG-PATLEPSLKALRRGGTLVLVGLPGGGPIPLLPA 271

Length = 339

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score =  121 bits (306), Expect = 4e-33
 Identities = 64/209 (30%), Positives = 104/209 (49%), Gaps = 19/209 (9%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESK--GLGSPPVHGCLANQVVH 58
           +VGS V  L  GD V + P   C  C YC+ G  N C  ++  G+G     G  A  ++ 
Sbjct: 71  EVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIG---TDGGFAEYLLV 127

Query: 59  PADLCFKLPDNVSLEEGAMCEPLS-VGV---HACRRAN--IGPETNVLIMGSGPIGLVTM 112
           P+    KLP  +   E A   PL+  G+   HA ++A   + P + V+++G G +G + +
Sbjct: 128 PSRRLVKLPRGLDPVEAA---PLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAV 184

Query: 113 LAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS 172
              RA     ++ VD  +  L +A++LGAD+++  S    D+ EEV ++    G G D  
Sbjct: 185 QILRALTPATVIAVDRSEEALKLAERLGADHVLNASD---DVVEEVRELTG--GRGADAV 239

Query: 173 FDCAGFNKTMSTALSATRAGGKVCLVGMG 201
            D  G ++T++ A      GG+  +VG G
Sbjct: 240 IDFVGSDETLALAAKLLAKGGRYVIVGYG 268

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score =  120 bits (303), Expect = 1e-32
 Identities = 64/217 (29%), Positives = 93/217 (42%), Gaps = 20/217 (9%)

Query: 9   LVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGS------PPVHGCLANQVVHPADL 62
           L  GDRV    G  C +C  C  G    C   K  G       P + G  A  +  P   
Sbjct: 82  LKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGT 141

Query: 63  CF-KLPDNVSLE--EGAMCEPLSVGVHACRRAN-IGPETNVLIMGSGPIGLVTMLAARAF 118
              ++PDNV  E    A C  L+  + A  RA  +G    V++ G+GP+GL  + AA+  
Sbjct: 142 AIVRVPDNVPDEVAAPANC-ALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLA 200

Query: 119 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAM----GTGIDVSFD 174
           GA R++++D    RL +A++ GAD  + +         + ++         G G DV  +
Sbjct: 201 GARRVIVIDGSPERLELAREFGADATIDIDE-----LPDPQRRAIVRDITGGRGADVVIE 255

Query: 175 CAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTP 211
            +G    +   L   R GG   LVG      TVPL P
Sbjct: 256 ASGHPAAVPEGLELLRRGGTYVLVGSVAPAGTVPLDP 292

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score =  118 bits (297), Expect = 1e-31
 Identities = 71/236 (30%), Positives = 101/236 (42%), Gaps = 32/236 (13%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE-----SKGL-----------GS 45
           VG  V ++ PGD V L     C QC +C  G+ NLC        KG            G 
Sbjct: 70  VGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGV 129

Query: 46  PPVH--GC--LANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGV-----HACRRANIGPE 96
           P  H  GC   A   V       K+  +  LE+      L  GV          A + P 
Sbjct: 130 PVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKAC---LLGCGVTTGIGAVVNTAKVEPG 186

Query: 97  TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAE 156
             V + G G +GL  +  A+A GA RI+ VD++  +L +AKK GA + V    N +++ +
Sbjct: 187 DTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFV----NPKEVDD 242

Query: 157 EVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPA 212
            VE I +    G D +F+C G  + M  AL AT  GG   ++G+      +   P 
Sbjct: 243 VVEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPF 298

Length = 366

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score =  115 bits (290), Expect = 5e-31
 Identities = 67/204 (32%), Positives = 96/204 (47%), Gaps = 11/204 (5%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGS----PPVHGCLANQVV 57
           V S+   L  G  VA+ P   C  C YC     N C   +  GS    P V G      V
Sbjct: 72  VHSDSSGLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKV 131

Query: 58  HPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARA 117
                C   P+    +  A  EPL+V +HA  +A       V + G GPIG + + A + 
Sbjct: 132 VDTAQCIPYPEKADEKVMAFAEPLAVAIHAAHQAGDLQGKRVFVSGVGPIGCLIVAAVKT 191

Query: 118 FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG 177
            GA  IV  DV    LS+A+++GAD +V    N Q+  ++++  +   G   DVSF+ +G
Sbjct: 192 LGAAEIVCADVSPRSLSLAREMGADKLV----NPQN--DDLDHYKAEKGY-FDVSFEVSG 244

Query: 178 FNKTMSTALSATRAGGKVCLVGMG 201
              +++T L  TRA G +  VGMG
Sbjct: 245 HPSSINTCLEVTRAKGVMVQVGMG 268

Length = 343

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score =  112 bits (283), Expect = 7e-30
 Identities = 70/203 (34%), Positives = 97/203 (47%), Gaps = 12/203 (5%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            VG  V  + PG RV + PGISC +C+YC  GR NLC +   LG   V G  A  V  PA
Sbjct: 71  AVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGE-HVDGGYAEYVAVPA 129

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGV--HACR-RANIGPETNVLIMG-SGPIGLVTMLAAR 116
                +PDN+S EE A   PL+     H    RA + P   VL+ G    +G   +  A+
Sbjct: 130 RNLLPIPDNLSFEEAA-AAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAK 188

Query: 117 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA 176
            FGA  I     +D +L  AK+LGAD ++      +D   EV ++      G+DV  +  
Sbjct: 189 LFGATVIATAGSED-KLERAKELGADYVIDYRK--EDFVREVRELTG--KRGVDVVVEHV 243

Query: 177 GFNKTMSTALSATRAGGKVCLVG 199
           G   T   +L +   GG++   G
Sbjct: 244 G-AATWEKSLKSLARGGRLVTCG 265

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score =  112 bits (282), Expect = 9e-30
 Identities = 69/214 (32%), Positives = 110/214 (51%), Gaps = 15/214 (7%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD 61
           VGS V  L PGD VA  P + C+ C  C  G Y+LC +   +GS    G     VV   +
Sbjct: 68  VGSGVDDLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKN 127

Query: 62  LCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAP 121
           L F LP ++ +E+GA  EP++VG+HA   A      NV+I+G+G IGL+ +  A A GA 
Sbjct: 128 L-FALPTDMPIEDGAFIEPITVGLHAFHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAK 186

Query: 122 RIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD-----CA 176
            +  +D++  +L++AK LGA        N ++++    +IQ  +    ++ FD      A
Sbjct: 187 SVTAIDINSEKLALAKSLGAMQTF----NSREMS--APQIQSVLR---ELRFDQLILETA 237

Query: 177 GFNKTMSTALSATRAGGKVCLVGMGHREMTVPLT 210
           G  +T+  A+       ++ LVG  H ++ +   
Sbjct: 238 GVPQTVELAIEIAGPRAQLALVGTLHHDLHLTSA 271

Length = 347

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score =  110 bits (278), Expect = 3e-29
 Identities = 69/202 (34%), Positives = 102/202 (50%), Gaps = 16/202 (7%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VG  V+   PGDRV L   I C +C+YC  G  NLC  ++      V G  A  V  P 
Sbjct: 68  EVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCR-NRAEYGEEVDGGFAEYVKVPE 126

Query: 61  DLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMG-SGPIGLVTMLAARA 117
               KLPDNVS E  A   C  +   VHA +RA +     VL+ G  G +G+  +  A+A
Sbjct: 127 RSLVKLPDNVSDESAALAAC-VVGTAVHALKRAGVKKGDTVLVTGAGGGVGIHAIQLAKA 185

Query: 118 FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG 177
            GA R++ V     +L + K+LGAD ++  S      +E+V+K+      G DV  +  G
Sbjct: 186 LGA-RVIAVTRSPEKLKILKELGADYVIDGS----KFSEDVKKL-----GGADVVIELVG 235

Query: 178 FNKTMSTALSATRAGGKVCLVG 199
            + T+  +L +   GG++ L+G
Sbjct: 236 -SPTIEESLRSLNKGGRLVLIG 256

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score =  110 bits (277), Expect = 5e-29
 Identities = 66/223 (29%), Positives = 96/223 (43%), Gaps = 15/223 (6%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG----SPPVHGCLANQV 56
           +VGSEVK   PGDRV +      W+    + G  +       LG    S    G  A   
Sbjct: 67  EVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQS--GGMLGGWKFSNFKDGVFAEYF 124

Query: 57  -VHPADLCF-KLPDNVSLEEGAMC-EPLSVGVHACRRANIGPETNVLIMGSGPIGLVTML 113
            V+ AD     LPD ++ E+  M  + +S G H    ANI     V + G GP+GL+ + 
Sbjct: 125 HVNDADANLAPLPDGLTDEQAVMLPDMMSTGFHGAELANIKLGDTVAVFGIGPVGLMAVA 184

Query: 114 AARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF 173
            AR  GA RI+ V     R+ +AK+ GA +IV       D+ E++ K+    G G+D   
Sbjct: 185 GARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKN--GDVVEQILKLTG--GKGVDAVI 240

Query: 174 DCAGFNKTMSTALSATRAGGKV-CLVGMGHREM-TVPLTPAAA 214
              G   T   AL   + GG +  +   G  +   +P      
Sbjct: 241 IAGGGQDTFEQALKVLKPGGTISNVNYYGEDDYLPIPREEWGV 283

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score =  110 bits (277), Expect = 6e-29
 Identities = 66/211 (31%), Positives = 101/211 (47%), Gaps = 10/211 (4%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD 61
           VG +   +  GD+V + P I C +C  C  G  NLC + + LG     G  A  V+ P  
Sbjct: 81  VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQ-DGGYAEYVIVPHS 139

Query: 62  LCFKLPDNVSLEEGAM--CEPLSVGVHACRRAN-IGPETNVLIMGSGPIGLVTMLAARAF 118
                P  +     A   C  L+    A ++   +  +  V+I+G+G +GL+ +   +A 
Sbjct: 140 RYLVDPGGLDPALAATLACSGLTA-YSAVKKLMPLVADEPVVIIGAGGLGLMALALLKAL 198

Query: 119 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGF 178
           G   I++VD+D+ +L  AK  GAD +V    N  D  +  ++I KA G G+D   D    
Sbjct: 199 GPANIIVVDIDEAKLEAAKAAGADVVV----NGSD-PDAAKRIIKAAGGGVDAVIDFVNN 253

Query: 179 NKTMSTALSATRAGGKVCLVGMGHREMTVPL 209
           + T S A      GGK+ LVG+   E T+PL
Sbjct: 254 SATASLAFDILAKGGKLVLVGLFGGEATLPL 284

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score =  109 bits (275), Expect = 9e-29
 Identities = 66/222 (29%), Positives = 103/222 (46%), Gaps = 29/222 (13%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQV-VHPA 60
           VG +V     GDRV +   + C  C YC+ G  N+C      G     G  A  V V  A
Sbjct: 69  VGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTH-PGSFAEYVAVPRA 127

Query: 61  DL-CFKLPDNVSLEEGAMCEPLSVGVHACR----------RANIGPETNVLIMGSGPIGL 109
           D+   +LPD+V     A      +G   CR          +A + P   V + G G +GL
Sbjct: 128 DVNLVRLPDDVDFVTAA-----GLG---CRFATAFRALVHQARVKPGEWVAVHGCGGVGL 179

Query: 110 VTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGI 169
             ++ A A GA R++ VD+DD +L +A++LGA   V  ++ ++D+A  V  +    G G 
Sbjct: 180 SAVMIASALGA-RVIAVDIDDDKLELARELGAVATVN-ASEVEDVAAAVRDL---TGGGA 234

Query: 170 DVSFDCAGFNKTMSTALSATRAGGKVCLVGM---GHREMTVP 208
            VS D  G  +T   ++++ R  G+   VG+       + +P
Sbjct: 235 HVSVDALGIPETCRNSVASLRKRGRHVQVGLTLGEEAGVALP 276

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score =  109 bits (274), Expect = 1e-28
 Identities = 59/194 (30%), Positives = 107/194 (55%), Gaps = 6/194 (3%)

Query: 3   GSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPAD 61
           G+E + +  GDRV  E  + CW C +C  G+Y +C +    G    V+G +A  +  P +
Sbjct: 80  GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKE 139

Query: 62  -LCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
            +  K+PD++  E+  + EPL+  +HA  RANI  +  V++ G+GP+GL  + AAR    
Sbjct: 140 AIVHKVPDDIPPEDAILIEPLACALHAVDRANIKFDDVVVLAGAGPLGLGMIGAARLKNP 199

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
            +++++D+ D RL++A+K GAD ++       D+ E+++++    G G D+  +  G   
Sbjct: 200 KKLIVLDLKDERLALARKFGADVVLNPPE--VDVVEKIKELTG--GYGCDIYIEATGHPS 255

Query: 181 TMSTALSATRAGGK 194
            +   L+  R  G+
Sbjct: 256 AVEQGLNMIRKLGR 269

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score =  109 bits (275), Expect = 2e-28
 Identities = 66/236 (27%), Positives = 95/236 (40%), Gaps = 36/236 (15%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGL----------------G 44
            VGS V  L PGD V L    SC +C  C  G    C     L                 
Sbjct: 69  AVGSAVTGLKPGDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDD 127

Query: 45  SPPVHGC------LANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHA-----CRRANI 93
             PVHG        A   V       K+  +V LE  A   PL  G+             
Sbjct: 128 GTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLA---PLGCGIQTGAGAVLNVLKP 184

Query: 94  GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQD 153
            P +++ + G+G +GL  ++AA+  G   I+ VD+ D RL +AK+LGA +++      +D
Sbjct: 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKE--ED 242

Query: 154 IAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPL 209
           +   V  I++  G G+D + D  G    +  A+ A    G + LVG       V L
Sbjct: 243 L---VAAIREITGGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPGAEVTL 295

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score =  108 bits (273), Expect = 4e-28
 Identities = 68/242 (28%), Positives = 101/242 (41%), Gaps = 46/242 (19%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPES-------KGLGSPP------ 47
           +VG EV+ L  GDRV +   I+C +C YCK G Y+ C  +       K  G         
Sbjct: 68  EVGPEVRNLKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGY 127

Query: 48  ------VHGCLANQVVHP-ADL-CFKLPDNVSLEEGA-MCEPLSVGVHACRRANIGPETN 98
                   G  A  V  P AD+  FK+PD++S E+   + + L  G HA   A + P   
Sbjct: 128 SHLTGGYAGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHAAELAEVKPGDT 187

Query: 99  VLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV 158
           V + G GP+GL    +A+  GA R++ +D    RL +A+       +     + D+ E +
Sbjct: 188 VAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINF-EEVDDVVEAL 246

Query: 159 EKIQKAMGTGIDVSFDCAGFN-------KTMST--------------ALSATRAGGKVCL 197
            ++    G G DV  D  G         K                  A+ A R GG V +
Sbjct: 247 RELTG--GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSI 304

Query: 198 VG 199
           +G
Sbjct: 305 IG 306

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score =  105 bits (265), Expect = 3e-27
 Identities = 59/193 (30%), Positives = 89/193 (46%), Gaps = 12/193 (6%)

Query: 7   KTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKL 66
           + L  G RV   P + C Q   C  G            SP   G  A  ++    L  ++
Sbjct: 84  RKLKVGTRVTSLPLLLCGQGASCGIGL-----------SPEAPGGYAEYMLLSEALLLRV 132

Query: 67  PDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIV 126
           PD +S+E+ A+ EPL+VG+HA RRA + P    L++G GPIGL  + A +A G   IV  
Sbjct: 133 PDGLSMEDAALTEPLAVGLHAVRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVAS 192

Query: 127 DVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTAL 186
           D    R ++A  +GAD +V  + +    A   E  +        V F+C G    +   +
Sbjct: 193 DFSPERRALALAMGADIVVDPAADSPFAAWAAELARAGGPKP-AVIFECVGAPGLIQQII 251

Query: 187 SATRAGGKVCLVG 199
                GG++ +VG
Sbjct: 252 EGAPPGGRIVVVG 264

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score =  103 bits (259), Expect = 2e-26
 Identities = 72/204 (35%), Positives = 100/204 (49%), Gaps = 12/204 (5%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKG--LGSPPVHGCLANQVVHP 59
           VGS V     GDRV +    SC  C YC+ G Y+ C ES G  LG+  + G  A  V  P
Sbjct: 69  VGSAVTNFKVGDRVLISCISSCGTCGYCRKGLYSHC-ESGGWILGNL-IDGTQAEYVRIP 126

Query: 60  -ADLC-FKLPDNVSLEEGAMCEPLSVGVHAC--RRANIGPETNVLIMGSGPIGLVTMLAA 115
            AD   +KLP+ V  E   M   +    + C      + P   V I+G+GP+GL  +L A
Sbjct: 127 HADNSLYKLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTA 186

Query: 116 RAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC 175
           + +   +I++VD+DD RL VAKKLGA + V  +    D  E+V ++    G G+DV  + 
Sbjct: 187 QLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAK--GDAIEQVLELTD--GRGVDVVIEA 242

Query: 176 AGFNKTMSTALSATRAGGKVCLVG 199
            G   T          GG +  VG
Sbjct: 243 VGIPATFELCQELVAPGGHIANVG 266

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  102 bits (257), Expect = 5e-26
 Identities = 67/210 (31%), Positives = 97/210 (46%), Gaps = 23/210 (10%)

Query: 1   KVGSEVKTLVPGDRVALEPGI-----SCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQ 55
            VG  V  L  GDRV    G+     +C +C+YC+ G   LCP  K  G   V G  A  
Sbjct: 70  AVGPGVSGLKVGDRV----GVKWLYDACGKCEYCRTGDETLCPNQKNSGY-TVDGTFAEY 124

Query: 56  VVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTML 113
            +  A     +PD +S E+ A  +C  ++V   A ++A + P   V+I G+G  G +  L
Sbjct: 125 AIADARYVTPIPDGLSFEQAAPLLCAGVTV-YKALKKAGLKPGDWVVISGAG--GGLGHL 181

Query: 114 A---ARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGID 170
               A+A G  R++ +DV D +L +AK+LGAD  V       D  E V+++    G G  
Sbjct: 182 GVQYAKAMGL-RVIAIDVGDEKLELAKELGADAFVDFKK--SDDVEAVKEL--TGGGGAH 236

Query: 171 VSFDCAGFNKTMSTALSATRAGGKVCLVGM 200
                A        AL   R GG +  VG+
Sbjct: 237 AVVVTAVSAAAYEQALDYLRPGGTLVCVGL 266

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score = 98.1 bits (245), Expect = 2e-24
 Identities = 66/220 (30%), Positives = 107/220 (48%), Gaps = 17/220 (7%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHP-A 60
           VGSEV ++ PGD V     IS   C +C+ G    C    G     V G     V  P A
Sbjct: 68  VGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSCVH-GGFWGAFVDGGQGEYVRVPLA 126

Query: 61  D-LCFKLPDNVSLEEG------AMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTML 113
           D    K+P + S +E       A+ + +  G HA   A + P + V+++G G +GL  +L
Sbjct: 127 DGTLVKVPGSPSDDEDLLPSLLALSDVMGTGHHAAVSAGVRPGSTVVVVGDGAVGLCAVL 186

Query: 114 AARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAM--GTGIDV 171
           AA+  GA RI+ +   + R ++A++ GA +IV      +   E V ++ + +  G G D 
Sbjct: 187 AAKRLGAERIIAMSRHEDRQALAREFGATDIVA-----ERGEEAVARV-RELTGGVGADA 240

Query: 172 SFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTP 211
             +C G  ++M  A++  R GG+V  VG+ H  + + +  
Sbjct: 241 VLECVGTQESMEQAIAIARPGGRVGYVGVPHGGVELDVRE 280

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score = 97.1 bits (242), Expect = 7e-24
 Identities = 68/235 (28%), Positives = 102/235 (43%), Gaps = 29/235 (12%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC---PESKGLGS------------ 45
           +VG  V  L  GD V L    SC  C  C  GR  LC     + G G+            
Sbjct: 75  EVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRG 134

Query: 46  -PPVHGC----LANQVVHPADLCFKLPDNVSLEEGAM--CEPLSVGVHAC-RRANIGPET 97
               H       A   V       K+  +V LE  A+  C  L+ GV A    A + P  
Sbjct: 135 GEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLT-GVGAVVNTAGVRPGQ 193

Query: 98  NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEE 157
           +V ++G G +GL  +L A A GA ++V VD+++ +L++A++LGA   V            
Sbjct: 194 SVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGD-----PNA 248

Query: 158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPA 212
           VE++++  G G+D +F+ AG    + TA   TR GG     G+   E  + +   
Sbjct: 249 VEQVRELTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPEARLSVPAL 303

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 94.6 bits (236), Expect = 1e-23
 Identities = 58/198 (29%), Positives = 80/198 (40%), Gaps = 42/198 (21%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD 61
           VGS V    PGDRV                                  G  A +VV PA+
Sbjct: 35  VGSGVTGFKPGDRVF-------------------------------CFGPHAERVVVPAN 63

Query: 62  LCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAP 121
           L   LPD +  E  A+    +  ++  R A       V ++G G +GL+    A+A GA 
Sbjct: 64  LLVPLPDGLPPERAALTALAATALNGVRDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAR 123

Query: 122 RIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKT 181
            +V VD D  R  +A+ LG  + V       D A+E+       G G DV  + +G    
Sbjct: 124 EVVGVDPDAARRELAEALGPADPVA-----ADTADEI------GGRGADVVIEASGSPSA 172

Query: 182 MSTALSATRAGGKVCLVG 199
           + TAL   R  G+V LVG
Sbjct: 173 LETALRLLRDRGRVVLVG 190

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score = 94.0 bits (234), Expect = 9e-23
 Identities = 68/234 (29%), Positives = 99/234 (42%), Gaps = 28/234 (11%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPES-----KGL-----------GS 45
           +G  V TL PGD+V    G  C +C  C   R NLC +S     +GL           G 
Sbjct: 68  IGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGK 127

Query: 46  PPVH----GCLANQVVHPADLCFKLPDNVSLEEGAM--CEPLSVGVHAC-RRANIGPETN 98
           P  H       A   V       K+  +  LE+  +  C   S G  A    A + P + 
Sbjct: 128 PIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCG-FSTGYGAAVNTAKVTPGST 186

Query: 99  VLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV 158
             + G G +GL  ++  +A GA RI+ VD++  +   AK+LGA   +      + I   V
Sbjct: 187 CAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPI---V 243

Query: 159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATR-AGGKVCLVGMGHREMTVPLTP 211
           E + +    G+D +F+  G   T+  AL ATR  GG   +VG+        L P
Sbjct: 244 EVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLDP 297

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 88.5 bits (220), Expect = 1e-22
 Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 4/101 (3%)

Query: 106 PIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAM 165
            +GL  +  A+A GA R++ VD  + +L +AK+LGAD+++      +D  E V ++    
Sbjct: 1   GVGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYRD--EDFVERVRELTG-- 56

Query: 166 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMT 206
           G G+DV  DC G   T+  AL   R GG+V +VG+      
Sbjct: 57  GRGVDVVIDCVGAPATLEQALELLRPGGRVVVVGLPGGAPV 97

Length = 131

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 92.2 bits (229), Expect = 5e-22
 Identities = 62/221 (28%), Positives = 97/221 (43%), Gaps = 16/221 (7%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           K G  VK    GD V  E  + C  C  C+ G  N C   K LG     G  A  +   A
Sbjct: 101 KTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGFS-ADGAFAEYIAVNA 159

Query: 61  DLCFKLPDNV-------SLEEGAMCEPLSVGVHAC--RRANIGPETNVLIMGSGPIGLVT 111
              +++ +         + E GA+ EP SV  +    R     P   V++ G+GPIGL  
Sbjct: 160 RYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAA 219

Query: 112 MLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAM-GTGID 170
           +  A+A GA +++  ++ + R ++AK++GAD +   +          EK+ +   G G D
Sbjct: 220 IALAKAAGASKVIAFEISEERRNLAKEMGADYV--FNPTKMRDCLSGEKVMEVTKGWGAD 277

Query: 171 VSFDCAG-FNKTMSTALSATRAGGKVCLVGMGHREMTVPLT 210
           +  + AG    T+     +    GK+  V +G    TVPL 
Sbjct: 278 IQVEAAGAPPATIPQMEKSIAINGKI--VYIGRAATTVPLH 316

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score = 91.7 bits (228), Expect = 5e-22
 Identities = 70/236 (29%), Positives = 106/236 (44%), Gaps = 32/236 (13%)

Query: 1   KVGSEVK---TLVPGDRVALEPGISCWQCDYCKGGRYNLCP---------------ESK- 41
           +VG  V+    L  GDRV     + C +C YC  G+ NLC                 ++ 
Sbjct: 67  EVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRL 126

Query: 42  -GLGSPPVH----GCLANQVVHPADLCFKLPDNVSLEEGAM--CEPLSVGVHACRRAN-I 93
             L   PV+    G LA   V PA     LP+++   E A+  C   +    A + A  +
Sbjct: 127 FRLDGGPVYMYSMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFT-AYGALKHAADV 185

Query: 94  GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQD 153
            P   V ++G G +G   +  A+AFGA  I+ VDV D +L+ AK+LGA +   V+   +D
Sbjct: 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHT--VNAAKED 243

Query: 154 IAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPL 209
               + +I    G G+DV  +  G  +T   AL   R GG+  +VG+     T  +
Sbjct: 244 AVAAIREI--TGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGGATAEI 297

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 90.9 bits (226), Expect = 7e-22
 Identities = 59/202 (29%), Positives = 90/202 (44%), Gaps = 17/202 (8%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VG  VK   PGDRVA         C+YC+ G    C    G G   + G  A       
Sbjct: 68  EVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGE-ELDGFFAEYAKVKV 126

Query: 61  DLCFKLPDNVSLEEGAMCEP--LSVGVHACRRANIGPETNVLIMG-SGPIGLVTMLAARA 117
               K+P NVS +EGA+  P    +     RRA +     VL+ G  G +G+  +  A+A
Sbjct: 127 TSLVKVPPNVS-DEGAVIVPCVTGMVYRGLRRAGVKKGETVLVTGAGGGVGIHAIQVAKA 185

Query: 118 FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG 177
            GA +++ V   + +  +  K  AD ++  S      +EEV+KI      G D+  +  G
Sbjct: 186 LGA-KVIAVTSSESKAKIVSKY-ADYVIVGSK----FSEEVKKIG-----GADIVIETVG 234

Query: 178 FNKTMSTALSATRAGGKVCLVG 199
              T+  +L +   GGK+  +G
Sbjct: 235 -TPTLEESLRSLNMGGKIIQIG 255

Length = 334

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score = 90.5 bits (225), Expect = 1e-21
 Identities = 63/207 (30%), Positives = 93/207 (44%), Gaps = 23/207 (11%)

Query: 1   KVGSEVKTLVPGDRVALEPGI-----SCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQ 55
           +VG+ V+    GDRV    G+     SC +C+YC+ G  NLC ++   G     G  A  
Sbjct: 67  EVGAGVEGRKVGDRV----GVGWLVGSCGRCEYCRRGLENLCQKAVNTGY-TTQGGYAEY 121

Query: 56  VVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTML 113
           +V  A+    LPD + L + A  +C  ++V   A R A   P   V ++G G +G + + 
Sbjct: 122 MVADAEYTVLLPDGLPLAQAAPLLCAGITV-YSALRDAGPRPGERVAVLGIGGLGHLAVQ 180

Query: 114 AARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF 173
            ARA G    V +     +  +A+KLGAD +V         +      Q A G G DV  
Sbjct: 181 YARAMGF-ETVAITRSPDKRELARKLGADEVVD--------SGAELDEQAAAG-GADVIL 230

Query: 174 DCAGFNKTMSTALSATRAGGKVCLVGM 200
                      AL   R GG++ LVG+
Sbjct: 231 VTVVSGAAAEAALGGLRRGGRIVLVGL 257

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 88.1 bits (219), Expect = 7e-21
 Identities = 60/201 (29%), Positives = 85/201 (42%), Gaps = 14/201 (6%)

Query: 12  GDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVS 71
           G RV  E  I+C +C+YC+ G Y  CP    LG     G  A  +  P +    +PD V 
Sbjct: 72  GKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVVPDLVP 131

Query: 72  LEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDY 131
            E+    EPL+  +    +  I P   V ++G G +GL+        G P +V+V     
Sbjct: 132 DEQAVFAEPLAAALEILEQVPITPGDKVAVLGDGKLGLLIAQVLALTG-PDVVLVGRHSE 190

Query: 132 RLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRA 191
           +L++A++LG      V T L D AE         G G DV  +  G    +  AL   R 
Sbjct: 191 KLALARRLG------VETVLPDEAESE-------GGGFDVVVEATGSPSGLELALRLVRP 237

Query: 192 GGKVCLVGMGHREMTVPLTPA 212
            G V L        +  LT A
Sbjct: 238 RGTVVLKSTYAGPASFDLTKA 258

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 87.9 bits (218), Expect = 1e-20
 Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 16/203 (7%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVH--GCLANQVVHP 59
           VG  V     G+RVA++P ISC  C  C  G+ N+C     LG   VH  G  +   V P
Sbjct: 68  VGEGVDAARIGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLG---VHRDGGFSEYAVVP 124

Query: 60  ADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLA-ARAF 118
           A    ++PD ++ +   M EP ++  +   R     +   LI G+GP+GL  +      +
Sbjct: 125 AKNAHRIPDAIADQYAVMVEPFTIAANVTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVY 184

Query: 119 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS--FDCA 176
               +++ D  D RL++AK+ GAD ++  +   + + E +E+       GI  +   D A
Sbjct: 185 NVKAVIVADRIDERLALAKESGADWVINNAQ--EPLGEALEE------KGIKPTLIIDAA 236

Query: 177 GFNKTMSTALSATRAGGKVCLVG 199
                +  A++      ++ L+G
Sbjct: 237 CHPSILEEAVTLASPAARIVLMG 259

Length = 339

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 86.4 bits (215), Expect = 3e-20
 Identities = 60/230 (26%), Positives = 94/230 (40%), Gaps = 40/230 (17%)

Query: 1   KVGSEVKTLVPGDRVALEPGI-----SCWQCDYCKGGRYNLCPESKGLGSPPV------H 49
            VGS+V     GDRV    G+     SC  C+ CK G    CP+     +          
Sbjct: 67  AVGSKVTKFKVGDRV----GVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQ 122

Query: 50  GCLANQVVHPADLCFKLPDNVSLEEGA--MC------EPLSVGVHACRRANIGPETNVLI 101
           G  A+ +V      FK+P+ +     A  +C       PL       +R  +GP   V +
Sbjct: 123 GGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYSPL-------KRNGVGPGKRVGV 175

Query: 102 MGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKI 161
           +G G +G + +  A+A GA  +        +   A KLGAD  +          ++ E +
Sbjct: 176 VGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALKLGADEFI--------ATKDPEAM 226

Query: 162 QKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTP 211
           +KA G+ +D+  D    +  +   LS  + GG + LVG     + VP  P
Sbjct: 227 KKAAGS-LDLIIDTVSASHDLDPYLSLLKPGGTLVLVGAPEEPLPVPPFP 275

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 85.1 bits (211), Expect = 1e-19
 Identities = 63/216 (29%), Positives = 94/216 (43%), Gaps = 36/216 (16%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            VGS V     GDRVA                          LG     G  A  VV PA
Sbjct: 71  AVGSGVTGFKVGDRVA-------------------------ALGGVGRDGGYAEYVVVPA 105

Query: 61  DLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMG-SGPIGLVTMLAARA 117
           D    LPD +S EE A      L+  +    RA + P   VL+ G +G +G   +  A+A
Sbjct: 106 DWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKA 165

Query: 118 FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG 177
            GA  + +V   + +L + K+LGAD+++      +D  E+V ++    G G+DV  D  G
Sbjct: 166 LGATVVAVVSSSE-KLELLKELGADHVINYRE--EDFVEQVRELTG--GKGVDVVLDTVG 220

Query: 178 FNKTMSTALSATRAGGKVCLVGM--GHREMTVPLTP 211
              T + +L+A   GG++  +G   G   + + L P
Sbjct: 221 -GDTFAASLAALAPGGRLVSIGALSGGPPVPLNLLP 255

Length = 326

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 83.6 bits (207), Expect = 3e-19
 Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 34/199 (17%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            +G  V+ L  GDRVA   G                             G  A   +  A
Sbjct: 65  ALGPGVRGLAVGDRVAGLSG-----------------------------GAFAEYDLADA 95

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
           D    LP      +    EPL   ++  RR  I     V ++G+G IGL+ +  A A GA
Sbjct: 96  DHAVPLPSL-LDGQAFPGEPLGCALNVFRRGWIRAGKTVAVIGAGFIGLLFLQLAAAAGA 154

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
            R++ +D    RL++A++LGA  +V   +  + I E V ++    G G DV  +  G   
Sbjct: 155 RRVIAIDRRPARLALARELGATEVVTDDS--EAIVERVRELTG--GAGADVVIEAVGHQW 210

Query: 181 TMSTALSATRAGGKVCLVG 199
            +  A       G++ + G
Sbjct: 211 PLDLAGELVAERGRLVIFG 229

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 84.2 bits (209), Expect = 3e-19
 Identities = 68/225 (30%), Positives = 100/225 (44%), Gaps = 32/225 (14%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC----PESKGLGSPPVH-----GC 51
           +VGS V++L  GDRV +   ++C +C  CK G   +C    P   G     V      G 
Sbjct: 67  EVGSAVESLKVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGG 126

Query: 52  LANQVVHP-ADL-CFKLPDNVSLEEGAMCEPLS----VGVHACRRANIGPETNVLIMGSG 105
            A  +  P AD    KLPD    +E      LS     G H    A + P   V + G+G
Sbjct: 127 QAEYLRVPYADFNLLKLPDRDGAKEKDDYLMLSDIFPTGWHGLELAGVQPGDTVAVFGAG 186

Query: 106 PIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAM 165
           P+GL+   +A   GA R+ +VD    RL +A+ +GA  I     +  D  + VE+I    
Sbjct: 187 PVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAIPI-----DFSD-GDPVEQILGLE 240

Query: 166 GTGIDVSFDCAGF-----------NKTMSTALSATRAGGKVCLVG 199
             G+D + DC G+           N  ++  +  TR GG + +VG
Sbjct: 241 PGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVG 285

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score = 82.0 bits (203), Expect = 2e-18
 Identities = 66/231 (28%), Positives = 101/231 (43%), Gaps = 35/231 (15%)

Query: 2   VGSEVKTLVPGDRVALEPGIS-CWQCDYCKGGRYNLC----PESKGL-----------GS 45
           VG  V  L PGD+V +   I  C +C  C+ G+ NLC        GL           G 
Sbjct: 70  VGEGVTNLKPGDKV-IPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGK 128

Query: 46  PPVH--GC--LANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVH-----ACRRANIGPE 96
              H  G    +   V   +   K+     LE   +   L  G       A   A + P 
Sbjct: 129 KIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCL---LGCGFSTGYGAAWNTAKVEPG 185

Query: 97  TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAE 156
           + V + G G +GL  ++ A+  GA RI+ VD+++ +   AK+ GA + +    N +D  +
Sbjct: 186 STVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFI----NPKDSDK 241

Query: 157 EV-EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHREM 205
            V E I++  G G+D SF+C G    M+ AL +T+ G G   +VG+     
Sbjct: 242 PVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAE 292

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 76.9 bits (190), Expect = 2e-18
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VG  V  L  GDRV + P I C +C  C+ GR NLCP  K LG   + G  A  VV PA
Sbjct: 44  EVGPGVTGLKVGDRVVVYPLIPCGKCAACREGRENLCPNGKFLGV-HLDGGFAEYVVVPA 102

Query: 61  DLCFKL 66
                L
Sbjct: 103 RNLVPL 108

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 80.8 bits (200), Expect = 4e-18
 Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 14/212 (6%)

Query: 1   KVGSEVKTLVPGDRVALEPGI-SCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHP 59
           +VG  V +L  GDRV++      C  C+YC  GR  LC   K  G   V G +A Q +  
Sbjct: 67  EVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYT-VDGGMAEQCIVT 125

Query: 60  ADLCFKLPDNVSLEEGAMCEPLSVGV---HACRRANIGPETNVLIMGSGPIG-LVTMLAA 115
           AD   K+P+   L+          GV    A + + I P   + I G+G +G L    A 
Sbjct: 126 ADYAVKVPEG--LDPAQASSITCAGVTTYKAIKVSGIKPGQWIAIYGAGGLGNLALQYAK 183

Query: 116 RAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC 175
             F A +++ VD++D +L++AK++GAD  +  S  ++D+A+ +++        +  +   
Sbjct: 184 NVFNA-KVIAVDINDDKLALAKEVGADLTIN-SKRVEDVAKIIQEKTGGAHAAVVTAVAK 241

Query: 176 AGFNKTMSTALSATRAGGKVCLVGMGHREMTV 207
           A FN+    A+ A RAGG+V  VG+    M +
Sbjct: 242 AAFNQ----AVDAVRAGGRVVAVGLPPESMDL 269

Length = 338

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score = 80.4 bits (199), Expect = 7e-18
 Identities = 66/240 (27%), Positives = 97/240 (40%), Gaps = 37/240 (15%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC------PESKGL-----------G 44
           VG  V  L PGD V       C +C +CK  + N+C       +   +           G
Sbjct: 71  VGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSING 130

Query: 45  SPPVHGCLANQ-----VVHPADLCFKLPDNVSLEEGAMCEPLSVGVH-----ACRRANIG 94
            P  H    +      VVH   +  K+     L++  +   LS GV      A   A + 
Sbjct: 131 KPIYHFVGTSTFSEYTVVHVGCVA-KINPEAPLDKVCL---LSCGVSTGLGAAWNVAKVK 186

Query: 95  PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI 154
             + V I G G +GL     AR  GA RI+ VD++  +   AKK G    V    N +D 
Sbjct: 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFV----NPKDH 242

Query: 155 AEEVEKIQKAM-GTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHREMTVPLTPA 212
            + V+++   M G G+D SF+C G    M +A      G G   L+G+ H++      P 
Sbjct: 243 DKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPM 302

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 77.6 bits (192), Expect = 5e-17
 Identities = 67/217 (30%), Positives = 98/217 (45%), Gaps = 19/217 (8%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            VG  V     GDRV      + W       G      E+  LG  P+ G LA  VV P 
Sbjct: 71  AVGEGVTRFKVGDRVVPTFFPN-WL-----DGPPTAEDEASALG-GPIDGVLAEYVVLPE 123

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHA----CRRANIGPETNVLIMGSGPIGLVTMLAAR 116
           +   + PD++S EE A   P + G+ A         + P   VL+ G+G + L  +  A+
Sbjct: 124 EGLVRAPDHLSFEEAA-TLPCA-GLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAK 181

Query: 117 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA 176
           A GA R++     D +L  AK LGAD+++   T   D  EEV K+    G G+D   +  
Sbjct: 182 AAGA-RVIATSSSDEKLERAKALGADHVINYRTTP-DWGEEVLKLTG--GRGVDHVVEVG 237

Query: 177 GFNKTMSTALSATRAGGKVCLVG-MGHREMTVPLTPA 212
           G   T++ ++ A   GG + L+G +   E  V L P 
Sbjct: 238 G-PGTLAQSIKAVAPGGVISLIGFLSGFEAPVLLLPL 273

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score = 76.5 bits (189), Expect = 2e-16
 Identities = 63/225 (28%), Positives = 97/225 (43%), Gaps = 34/225 (15%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCP-----ESKGL-----------GS 45
           VG  V ++ PGD V       C +C +CK G+ NLC      + KGL           G 
Sbjct: 71  VGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGK 130

Query: 46  PPVH--GCLA---NQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVH-----ACRRANIGP 95
           P  H  G        VV    +  K+     L++  +   L  GV          A + P
Sbjct: 131 PIYHFMGTSTFSEYTVVAEISVA-KINPEAPLDKVCL---LGCGVTTGYGAVLNTAKVEP 186

Query: 96  ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIA 155
            + V + G G +GL  +  A+A GA RI+ +D++  +  +AKK GA + V    + + I 
Sbjct: 187 GSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPI- 245

Query: 156 EEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVG 199
              + + +    G+D +F+C G  K M  AL A   G G   ++G
Sbjct: 246 --QQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIG 288

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 75.9 bits (187), Expect = 2e-16
 Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 18/168 (10%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VG  VK +  GDRV +   +    CD C  G   LC  + G+     +G  A  +V P 
Sbjct: 68  EVGDHVKGVKKGDRVVVYNRVFDGTCDMCLSGNEMLC-RNGGIIGVVSNGGYAEYIVVPE 126

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGV----HACRRANIGPETNVLIMG-SGPIGLVTMLAA 115
              FK+PD++S E  A    L V      HA + A +GP   V++ G SG  G+  +  A
Sbjct: 127 KNLFKIPDSISDELAA---SLPVAALTAYHALKTAGLGPGETVVVFGASGNTGIFAVQLA 183

Query: 116 RAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQK 163
           +  GA  I +      R    K+ GAD +V       ++ E+V++I K
Sbjct: 184 KMMGAEVIAVS-----RKDWLKEFGADEVVDYD----EVEEKVKEITK 222

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 74.1 bits (183), Expect = 8e-16
 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 6/145 (4%)

Query: 1   KVGSEVKTLVPGDRVALEP-GISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHP 59
            VG  V     GDRV +   G +C +C YC+ GR NLC  ++  G   V G  A  +V  
Sbjct: 72  AVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGY-TVDGGYAEYMVAD 130

Query: 60  ADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARA 117
               + +P++   EE A  +C  + +G  A + A + P   + + G G    + +  AR 
Sbjct: 131 ERFAYPIPEDYDDEEAAPLLCAGI-IGYRALKLAGLKPGQRLGLYGFGASAHLALQIARY 189

Query: 118 FGAPRIVIVDVDDYRLSVAKKLGAD 142
            GA  +           +A++LGAD
Sbjct: 190 QGA-EVFAFTRSGEHQELARELGAD 213

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score = 73.9 bits (182), Expect = 1e-15
 Identities = 62/240 (25%), Positives = 102/240 (42%), Gaps = 38/240 (15%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGL--------GSPPVH--- 49
           KVG  V  + PGD V L    +C +C +C  G  NLC     L        G+   H   
Sbjct: 69  KVGPGVTGVKPGDHVVLSFIPACGRCRWCSTGLQNLCDLGAALLTGSQISDGTYRFHADG 128

Query: 50  ---------GCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGV-----HACRRANIGP 95
                    G  +   V P     K+ D++ L++  +   +  GV      A   A++ P
Sbjct: 129 QDVGQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACL---VGCGVPTGWGSAVNIADVRP 185

Query: 96  ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIA 155
              V++MG G +G+  +  A   GA +++ VD  +++   A K GA +          + 
Sbjct: 186 GDTVVVMGIGGVGINAVQGAAVAGARKVIAVDPVEFKREQALKFGATHAF------ASME 239

Query: 156 EEVEKIQKAM-GTGIDVSFDCAGFNK--TMSTALSATRAGGKVCLVGMGHRE-MTVPLTP 211
           E V+ +++   G G D +    G      ++ ALSATR GG+V + G+G    + V +  
Sbjct: 240 EAVQLVRELTNGQGADKTIITVGEVDGEHIAEALSATRKGGRVVVTGLGPMADVDVKVNL 299

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score = 73.7 bits (181), Expect = 2e-15
 Identities = 64/223 (28%), Positives = 97/223 (43%), Gaps = 28/223 (12%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC-----PESKGL-----------GS 45
           VG  V ++  GD V       C +C +C  G+ NLC      + KGL           G 
Sbjct: 70  VGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQ 129

Query: 46  PPVH--GC--LANQVVHPADLCFKLPDNVSLEEGAM--CEPLSVGVHAC-RRANIGPETN 98
           P  H  GC   +   V P     K+     LEE  +  C  ++ G+ A    A +     
Sbjct: 130 PIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCG-VTTGIGAVLNTAKVEEGDT 188

Query: 99  VLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV 158
           V + G G IGL  +  AR   A RI+ +D++  +  +AKKLGA + V  +   + I E +
Sbjct: 189 VAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVI 248

Query: 159 EKIQKAMGTGIDVSFDCAGFNKTMSTAL-SATRAGGKVCLVGM 200
            +I      G+D SF+C G    M  AL    +  G+  ++G+
Sbjct: 249 VEITDG---GVDYSFECIGNVNVMRAALECCHKGWGESIIIGV 288

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score = 72.9 bits (179), Expect = 3e-15
 Identities = 70/240 (29%), Positives = 103/240 (42%), Gaps = 37/240 (15%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE-------------------SKG 42
           VG  V+ L  GD V       C  C YCK  + NLC                     +KG
Sbjct: 80  VGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKG 139

Query: 43  LGSPPVH----GCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVH-----ACRRANI 93
            G P  H           V  +    K+  N  L++  M   LS GV      A   AN+
Sbjct: 140 DGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKK--MSL-LSCGVSTGVGAAWNTANV 196

Query: 94  GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQD 153
              ++V I G G +GL     ARA GA +I+ VD++  +    K++G  + +    N +D
Sbjct: 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFI----NPKD 252

Query: 154 IAEEV-EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHREMTVPLTP 211
             + V E+I++  G G+D SF+CAG  + +  A  +T  G G   L+G+      +PL P
Sbjct: 253 SDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHP 312

Length = 381

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 69.1 bits (170), Expect = 4e-14
 Identities = 60/200 (30%), Positives = 79/200 (39%), Gaps = 40/200 (20%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD 61
           VG  V     GD V             C GG          LG     G LA   V  A 
Sbjct: 72  VGEGVTRFRVGDEVY-----------GCAGG----------LGGLQ--GSLAEYAVVDAR 108

Query: 62  LCFKLPDNVSLEEGAMCEPLSVGVHA----CRRANIGPETNVLIM-GSGPIGLVTMLAAR 116
           L    P N+S+ E A   PL VG+ A      RA +     VLI  G+G +G V +  A+
Sbjct: 109 LLALKPANLSMREAA-ALPL-VGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAK 166

Query: 117 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQD-IAEEVEKIQKAMGTGIDVSFDC 175
           A GA   V       + + A+ LGAD I+     + + +AE         G G DV FD 
Sbjct: 167 AAGA--RVYATASSEKAAFARSLGADPIIYYRETVVEYVAEHTG------GRGFDVVFDT 218

Query: 176 AGFNKTMSTALSATRAGGKV 195
            G  +T+  +  A    G+V
Sbjct: 219 VG-GETLDASFEAVALYGRV 237

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 68.0 bits (167), Expect = 1e-13
 Identities = 58/217 (26%), Positives = 83/217 (38%), Gaps = 33/217 (15%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD 61
           VG+ V     GDRV++ P       D    G+Y               G  A   + PA 
Sbjct: 72  VGAGVTGFAVGDRVSVIP-----AADL---GQY---------------GTYAEYALVPAA 108

Query: 62  LCFKLPDNVSLEEGAMCEPLSVGVHAC--RRANIGPETNVLIMG-SGPIGLVTMLAARAF 118
              KLPD +S  E A      +  +      A + P  +VLI   S  +GL  +  A A 
Sbjct: 109 AVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAA 168

Query: 119 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGF 178
           GA  I      + R      LGA ++  + T+ +D+  EV +I    G G+DV FD  G 
Sbjct: 169 GATVIATTRTSEKR-DALLALGAAHV--IVTDEEDLVAEVLRI--TGGKGVDVVFDPVG- 222

Query: 179 NKTMSTALSATRAGGKVCLVG-MGHREMTVPLTPAAA 214
               +    A   GG + + G +       PL  A  
Sbjct: 223 GPQFAKLADALAPGGTLVVYGALSGEPTPFPLKAALK 259

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 68.0 bits (166), Expect = 2e-13
 Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 18/212 (8%)

Query: 12  GDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD-LCFKLPDNV 70
           G  V +   I C +C+ CK GR  +C   K  G+  + G  A+ +V PA  LC  + D  
Sbjct: 77  GKAVIVPAVIPCGECELCKTGRGTICRAQKMPGN-DMQGGFASHIVVPAKGLC--VVDEA 133

Query: 71  SLEEGAM--------CEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPR 122
            L    +         + ++    A  +A +     V+++G+G +G   +  A+A GA  
Sbjct: 134 RLAAAGLPLEHVSVVADAVTTPYQAAVQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAA- 192

Query: 123 IVIVDVDDYRLSVAKKLGADNIVKV-STNLQDIAEEVEKIQKAMG---TGIDVSFDCAGF 178
           +V +D+D  +L + K  GAD  +     + +++ + ++   KA G   TG  + F+C+G 
Sbjct: 193 VVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKI-FECSGS 251

Query: 179 NKTMSTALSATRAGGKVCLVGMGHREMTVPLT 210
                +ALS    GG + +VG    +    L+
Sbjct: 252 KPGQESALSLLSHGGTLVVVGYTMAKTEYRLS 283

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score = 67.5 bits (165), Expect = 3e-13
 Identities = 66/230 (28%), Positives = 90/230 (39%), Gaps = 34/230 (14%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC----------------PESKGLGS 45
           VG  V  + PGD V L     C QC  CK GR   C                  S  LG 
Sbjct: 69  VGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGI 128

Query: 46  PPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHA-----CRRANIGPETNVL 100
               G  A + +  A  C K+          +   L  GV A          +    +V 
Sbjct: 129 ----GAFAEKTLVHAGQCTKVDPAADPAAAGL---LGCGVMAGLGAAVNTGGVKRGDSVA 181

Query: 101 IMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEK 160
           ++G G +G   +  A   GA +I+ VD+DD +L  A++ GA + V  S       + VE 
Sbjct: 182 VIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGT-----DPVEA 236

Query: 161 IQKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPL 209
           I+    G G DV  D  G  +T   A  A    G V LVG+   +MT+ L
Sbjct: 237 IRALTGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTPDMTLEL 286

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 65.9 bits (162), Expect = 7e-13
 Identities = 58/207 (28%), Positives = 82/207 (39%), Gaps = 47/207 (22%)

Query: 2   VGSEVKTLVPGDRV-ALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           VG  V     GDRV AL  G          GG Y                  A  VV PA
Sbjct: 72  VGPGVTGWKVGDRVCALLAG----------GG-Y------------------AEYVVVPA 102

Query: 61  DLCFKLPDNVSLEEGA-MCEPLSVGVHA-CRRANIGPETNVLIMG--SGPIGLVTMLAAR 116
                +P+ +SL E A + E          +   +     VLI G  SG +G   +  A+
Sbjct: 103 GQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASG-VGTAAIQLAK 161

Query: 117 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA 176
           A GA  I     ++ +L   + LGAD  V ++   +D AEEV++     G G+DV  D  
Sbjct: 162 ALGARVIATAGSEE-KLEACRALGAD--VAINYRTEDFAEEVKEATG--GRGVDVILDMV 216

Query: 177 G---FNKTMSTALSATRAGGKVCLVGM 200
           G     +     L A    G++ L+G+
Sbjct: 217 GGDYLARN----LRALAPDGRLVLIGL 239

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 65.7 bits (161), Expect = 9e-13
 Identities = 57/224 (25%), Positives = 83/224 (37%), Gaps = 41/224 (18%)

Query: 11  PGDRVALEPG--------ISCWQCDYCKGGRYNLCPES-------KGLGSPPVHGCLANQ 55
            GD   L PG            +C  C+ GR + C          KGL     HG +   
Sbjct: 72  VGDGSGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGL-----HGFMREY 126

Query: 56  VVHPADLCFKLPDNVSLEEGAMCEPLSVGVHA-------CRRANIGPETNVLIMGSGPIG 108
            V   +   K+P +++ + G + EPLSV   A        +R         L++G+GPIG
Sbjct: 127 FVDDPEYLVKVPPSLA-DVGVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIG 185

Query: 109 LVTMLAARAFGAPRIVI--VDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMG 166
           L+  L  R  G    V+   D  D +  + ++LGA  +     N         K+     
Sbjct: 186 LLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV-----NSSKTPVAEVKLVGEF- 239

Query: 167 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM--GHREMTVP 208
              D+  +  G       AL A    G V L G+  G RE  V 
Sbjct: 240 ---DLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVD 280

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 64.5 bits (157), Expect = 3e-12
 Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 22/222 (9%)

Query: 1   KVGSEVKTLVPGDRVALEPGI---SCWQCDYCKGGRYNLCPE------SKGLGSPPVHGC 51
           K+G  VK    GDRV +  G+   SC  C+ C     N CP+      S G      +G 
Sbjct: 80  KLGKNVKKFKEGDRVGV--GVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGG 137

Query: 52  LANQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGL 109
            ++ +V       + PDN+ L+ GA  +C  ++V           P  ++ + G G +G 
Sbjct: 138 YSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGH 197

Query: 110 VTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGI 169
           V +   +AFG    VI    +       +LGAD+ + VST+        EK++ A+GT +
Sbjct: 198 VAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFL-VSTD-------PEKMKAAIGT-M 248

Query: 170 DVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTP 211
           D   D       +   L   +  GK+  +G+  + + +P+ P
Sbjct: 249 DYIIDTVSAVHALGPLLGLLKVNGKLITLGLPEKPLELPIFP 290

Length = 360

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 64.1 bits (157), Expect = 3e-12
 Identities = 55/223 (24%), Positives = 77/223 (34%), Gaps = 60/223 (26%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VGS V     GDRVA           +  GG  N           P +G     VV  A
Sbjct: 68  EVGSGVTRFKVGDRVAG----------FVHGGNPN----------DPRNGAFQEYVVADA 107

Query: 61  DLCFKLPDNVSLEEGA------------MCEPLSVGVHACRRANIGPETNVLIMG-SGPI 107
           DL  K+PDN+S EE A            + + L + +   + +       VLI G S  +
Sbjct: 108 DLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSV 167

Query: 108 GLVTMLAARAFGAPRIVIVDVDDYRLSVA--------KKLGADNIV--KVSTNLQDIAEE 157
           G + +  A+  G    VI          A        K LGAD +               
Sbjct: 168 GTLAIQLAKLAGYK--VIT--------TASPKNFDLVKSLGADAVFDYHDPD-------V 210

Query: 158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM 200
           VE I+ A G  +  + DC    ++      A    G   LV +
Sbjct: 211 VEDIRAATGGKLRYALDCISTPESAQLCAEALGRSGGGKLVSL 253

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent

 Score = 64.1 bits (156), Expect = 4e-12
 Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 36/231 (15%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC----PESKGLGSPPVH-----GC 51
           + G +V+ +  GD V++   I+C +C  CK G   +C    P   G     V      G 
Sbjct: 75  EKGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGG 134

Query: 52  LANQVVHP-ADL-CFKLPD-NVSLEE----GAMCEPLSVGVHACRRANIGPETNVLIMGS 104
            +  V+ P AD    K PD + +LE+      + +    G H    A +GP + V I G+
Sbjct: 135 QSEYVMVPYADFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGAVTAGVGPGSTVYIAGA 194

Query: 105 GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKA 164
           GP+GL    +A+  GA  +++ D++  RL+ A+  G + +     +L   A   E+I++ 
Sbjct: 195 GPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETV-----DLSKDATLPEQIEQI 249

Query: 165 MGT-GIDVSFDCAGFNK--------------TMSTALSATRAGGKVCLVGM 200
           +G   +D + DC GF                 +++ +  TR GG + + G+
Sbjct: 250 LGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 63.2 bits (155), Expect = 6e-12
 Identities = 55/203 (27%), Positives = 81/203 (39%), Gaps = 37/203 (18%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            VG  V     GDRVA           Y                 PP  G  A   V PA
Sbjct: 68  AVGPGVTGFKVGDRVA-----------YA---------------GPP--GAYAEYRVVPA 99

Query: 61  DLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMG-SGPIGLVTMLAARA 117
               KLPD +S E  A  + + L+          + P   VL+   +G +GL+    A+A
Sbjct: 100 SRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKA 159

Query: 118 FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG 177
            GA  I  V  ++ +  +A+  GAD+++    + +D  E V +I    G G+DV +D  G
Sbjct: 160 LGATVIGTVSSEE-KAELARAAGADHVI-NYRD-EDFVERVREITG--GRGVDVVYDGVG 214

Query: 178 FNKTMSTALSATRAGGKVCLVGM 200
              T   +L + R  G +   G 
Sbjct: 215 -KDTFEGSLDSLRPRGTLVSFGN 236

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 63.0 bits (154), Expect = 7e-12
 Identities = 59/221 (26%), Positives = 85/221 (38%), Gaps = 42/221 (19%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD 61
           VG  V  L  GDRV                           LG     G  A  VV PAD
Sbjct: 72  VGEGVDGLKVGDRVW------LT-----------------NLGWGRRQGTAAEYVVVPAD 108

Query: 62  LCFKLPDNVSLEEGAMCEPLSVGVHAC-------RRANIGPETNVLIMG-SGPIGLVTML 113
               LPD VS E+GA     ++G+ A         RA       VL+ G SG +G   + 
Sbjct: 109 QLVPLPDGVSFEQGA-----ALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQ 163

Query: 114 AARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF 173
            AR  GA R++          + ++ GAD +       +D+A+ +       G G+DV  
Sbjct: 164 LARWAGA-RVIATASSAEGAELVRQAGADAVFNYRA--EDLADRILAATA--GQGVDVII 218

Query: 174 DCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
           +    N  ++  L     GG++ + G G    T+P+ P  A
Sbjct: 219 EVL-ANVNLAKDLDVLAPGGRIVVYGSGGLRGTIPINPLMA 258

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 61.7 bits (151), Expect = 2e-11
 Identities = 60/205 (29%), Positives = 92/205 (44%), Gaps = 45/205 (21%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD 61
           VG  V     GDRV                                  G  A +VV PA 
Sbjct: 72  VGEGVTGFKVGDRVV---------------------------ALTG-QGGFAEEVVVPAA 103

Query: 62  LCFKLPDNVSLEEGAMCEPLSVGV--HAC-RRANIGPETNVLIMG-SGPIGLVTMLAARA 117
             F LPD +S EE A   P++ G   HA  RRA + P   VL++G +G +GL  +  A+A
Sbjct: 104 AVFPLPDGLSFEEAA-ALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKA 162

Query: 118 FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG 177
            GA R++     + +L++A+ LGAD+++       D+ E V+ +    G G+DV +D  G
Sbjct: 163 LGA-RVIAAASSEEKLALARALGADHVIDYRD--PDLRERVKALTG--GRGVDVVYDPVG 217

Query: 178 ---FNKTMSTALSATRAGGKVCLVG 199
              F      +L +   GG++ ++G
Sbjct: 218 GDVFEA----SLRSLAWGGRLLVIG 238

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score = 60.3 bits (146), Expect = 8e-11
 Identities = 60/218 (27%), Positives = 93/218 (42%), Gaps = 35/218 (16%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCP----ESKGL------------GS 45
           +G  V     GD V       C  C +C  G+ N+C     E KG+            G 
Sbjct: 78  IGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGK 137

Query: 46  PPVHGCLANQ-----VVHPADLCFKLPDNVSLEEGAMCEPLSVGVHA-----CRRANIGP 95
           P  H C  +      VVH +    K+     L +  +   LS GV A        A++  
Sbjct: 138 PVYHYCAVSSFSEYTVVH-SGCAVKVDPLAPLHKICL---LSCGVAAGLGAAWNVADVSK 193

Query: 96  ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIA 155
            ++V+I G G +GL     A+  GA +I+ VD++  +   AK  G  + +    N  D++
Sbjct: 194 GSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFI----NPNDLS 249

Query: 156 EEVEKIQKAM-GTGIDVSFDCAGFNKTMSTALSATRAG 192
           E ++++ K M G G D SF+C G     +TAL +   G
Sbjct: 250 EPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDG 287

Length = 378

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 62/223 (27%), Positives = 96/223 (43%), Gaps = 33/223 (14%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------- 46
           VG  V T+ PGD+V       C +C  C     NLC ++  LG P               
Sbjct: 75  VGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKND-LGKPQGLMQDGTSRFTCKG 133

Query: 47  -PVHGCLANQ------VVHPADLCFKLPDNVSLEEGAM--CEPLSVGV-HACRRANIGPE 96
            P+H  L         VV    +  K+     LE+  +  C   S G   A   A + P 
Sbjct: 134 KPIHHFLGTSTFSEYTVVDEIAVA-KIDAAAPLEKVCLIGCG-FSTGYGAAVNTAKVTPG 191

Query: 97  TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAE 156
           +   + G G +GL  ++  +A GA RI+ VD++  + + AK+LGA   +    N QD  +
Sbjct: 192 STCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECI----NPQDYKK 247

Query: 157 EV-EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV 198
            + E + +    G+D SF+  G   TM  AL++   G  V ++
Sbjct: 248 PIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVI 290

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 57.5 bits (139), Expect = 5e-10
 Identities = 53/200 (26%), Positives = 81/200 (40%), Gaps = 16/200 (8%)

Query: 9   LVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP------PVHGCLANQVVHPADL 62
           L  G RV     + C +C  C+ G    C   +  G        P+ G  A     PA  
Sbjct: 26  LRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCHLPAGT 85

Query: 63  -CFKLPDNV--SLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFG 119
               +PD++  ++   A C   +V + A   A       VL++G+G +GL    AA A G
Sbjct: 86  AIVPVPDDLPDAVAAPAGCATATV-MAALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAG 144

Query: 120 APRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFN 179
           A R+V  D    R  +A   GA  + +       +AE    +Q   G G+DV+ + +G  
Sbjct: 145 AARVVAADPSPDRRELALSFGATALAEPEV----LAERQGGLQN--GRGVDVALEFSGAT 198

Query: 180 KTMSTALSATRAGGKVCLVG 199
             +   L +   GG   L G
Sbjct: 199 AAVRACLESLDVGGTAVLAG 218

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 57.7 bits (140), Expect = 5e-10
 Identities = 56/218 (25%), Positives = 84/218 (38%), Gaps = 46/218 (21%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD 61
           VG  V     GDRV          C    GG Y                  A  V  PA 
Sbjct: 72  VGEGVSRWKVGDRV----------CALVAGGGY------------------AEYVAVPAG 103

Query: 62  LCFKLPDNVSLEEGAMCEP---LSVGVHACRRANIGPETNVLIM-GSGPIGLVTMLAARA 117
               +P+ +SL E A   P    +V  +  +R  +     VLI  G+  IG   +  A+A
Sbjct: 104 QVLPVPEGLSLVEAAAL-PETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKA 162

Query: 118 FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG 177
           FGA        D+ + +  + LGAD  + ++   +D  E V+   +  G G+DV  D  G
Sbjct: 163 FGARVFTTAGSDE-KCAACEALGAD--IAINYREEDFVEVVK--AETGGKGVDVILDIVG 217

Query: 178 ---FNKTMSTALSATRAGGKVCLVG-MGHREMTVPLTP 211
               N+ +     A    G++  +G  G R+  + L P
Sbjct: 218 GSYLNRNI----KALALDGRIVQIGFQGGRKAELDLGP 251

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 13/202 (6%)

Query: 1   KVGSEVKTLVPGDRVALE-PGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHP 59
            VG  V     GDRV +   G  C  CD C+ G +  C   K  G     G  A  ++ P
Sbjct: 68  AVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGV-TRDGGYAEYMLAP 126

Query: 60  ADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARA 117
           A+   ++PD++   E A  +C  ++   +A R +   P   V + G G +G + +  A  
Sbjct: 127 AEALARIPDDLDAAEAAPLLCAGVTT-FNALRNSGAKPGDLVAVQGIGGLGHLAVQYAAK 185

Query: 118 FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG 177
            G  R V +     +  +A+KLGA     + T+ +D+AE +    + +G G  +    A 
Sbjct: 186 MGF-RTVAISRGSDKADLARKLGAH--HYIDTSKEDVAEAL----QELG-GAKLILATAP 237

Query: 178 FNKTMSTALSATRAGGKVCLVG 199
             K +S  +      GK+ ++G
Sbjct: 238 NAKAISALVGGLAPRGKLLILG 259

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 54.5 bits (132), Expect = 5e-09
 Identities = 47/201 (23%), Positives = 70/201 (34%), Gaps = 45/201 (22%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            VG  V     GD V                          G+      G  A  VV PA
Sbjct: 73  AVGPGVTGFKVGDEVF-------------------------GMTPFTRGGAYAEYVVVPA 107

Query: 61  DLCFKLPDNVSLEEGAMCEPLSV-----GVHACRRANIGPETNVLIMG-SGPIGLVTMLA 114
           D     P N+S EE A   PL+       +       +     VLI G +G +G   +  
Sbjct: 108 DELALKPANLSFEEAAAL-PLAGLTAWQALF--ELGGLKAGQTVLIHGAAGGVGSFAVQL 164

Query: 115 ARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD 174
           A+A GA   VI           + LGAD ++  +    + A            G+D   D
Sbjct: 165 AKARGA--RVIATASAANADFLRSLGADEVIDYTKGDFERAAAPG--------GVDAVLD 214

Query: 175 CAGFNKTMSTALSATRAGGKV 195
             G  +T++ +L+  + GG++
Sbjct: 215 TVGG-ETLARSLALVKPGGRL 234

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 50/202 (24%), Positives = 78/202 (38%), Gaps = 45/202 (22%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VGS V  L+ G RV    G   WQ +Y                           VV PA
Sbjct: 70  EVGSGVSGLLVGQRVLPLGGEGTWQ-EY---------------------------VVAPA 101

Query: 61  DLCFKLPDNVSLEEGAMC--EPLSVGVHACRRANIGPETNVLIM---GSGPIG--LVTML 113
           D    +PD++S E+ AM    PL+  +         P  + +I     S  +G  L+ + 
Sbjct: 102 DDLIPVPDSISDEQAAMLYINPLTAWL-MLTEYLKLPPGDWVIQNAANSA-VGRMLIQLA 159

Query: 114 AARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF 173
               F    I +V  D+    + K LGAD ++  S    D+A+ V++     G G  ++ 
Sbjct: 160 KLLGFKT--INVVRRDEQVEEL-KALGADEVIDSSPE--DLAQRVKEATG--GAGARLAL 212

Query: 174 DCAGFNKTMSTALSATRAGGKV 195
           D  G     +    + R GG +
Sbjct: 213 DAVGGESA-TRLARSLRPGGTL 233

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 46/214 (21%), Positives = 79/214 (36%), Gaps = 48/214 (22%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VGS V  L  GDRV    G++                           G  A  V   A
Sbjct: 41  RVGSGVTGLKVGDRVM---GLA--------------------------PGAFATHVRVDA 71

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHAC-------RRANIGPETNVLIM-GSGPIGLVTM 112
            L  K+PD++S EE A     ++ V            A +    +VLI   +G +G   +
Sbjct: 72  RLVVKIPDSLSFEEAA-----TLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAI 126

Query: 113 LAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS 172
             A+  GA     V  ++ R  + +  G  + +  S +L   A+ + +     G G+DV 
Sbjct: 127 QLAQHLGAEVFATVGSEEKREFLRELGGPVDHIFSSRDL-SFADGILRATG--GRGVDVV 183

Query: 173 FDCAGFNKTMSTALSATRAGGKVCLVGMGHREMT 206
            +     + +  +       G+   V +G R++ 
Sbjct: 184 LNSLS-GELLRASWRCLAPFGR--FVEIGKRDIL 214

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 57/211 (27%), Positives = 79/211 (37%), Gaps = 50/211 (23%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            VGS V     GD V                          G   P   G LA  VV P 
Sbjct: 72  AVGSGVTRFKVGDEVF-------------------------GRLPPKGGGALAEYVVAPE 106

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHAC----RRANIGPETNVLIMG-SGPIGLVTMLAA 115
               K P+ VS EE A   P++ G+ A         + P   VLI G SG +G   +  A
Sbjct: 107 SGLAKKPEGVSFEEAA-ALPVA-GLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIA 164

Query: 116 RAFGAPRIVIVD----VDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDV 171
           +A GA  +  V      +     + + LGAD ++  +T  +D        +K      DV
Sbjct: 165 KALGA-HVTGVCSTRNAE-----LVRSLGADEVIDYTT--EDFVALTAGGEK-----YDV 211

Query: 172 SFDCAGFNK-TMSTALSATRAGGKVCLVGMG 201
            FD  G +  ++  A  A + GG+   VG G
Sbjct: 212 IFDAVGNSPFSLYRASLALKPGGRYVSVGGG 242

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176199 cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 29/178 (16%)

Query: 7   KTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKL 66
            T   G +V + P     + +       N  P S+   S    G + + V  P D   KL
Sbjct: 76  GTYKVGTKVVMVPNTPVEKDEIIPE---NYLPSSRFRSSG-YDGFMQDYVFLPPDRLVKL 131

Query: 67  PDNVSLEEGAMCEPLSVGVHACRRAN---IGPETNVLIMGSGPIGLVTMLAAR-AFGAPR 122
           PDNV  E  A  E +SVGVHA  R           + + G G +G +T L  +  +   +
Sbjct: 132 PDNVDPEVAAFTELVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESK 191

Query: 123 IVIVDVDDYRL---SVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG 177
           +V+      +L   S A +         +  + DI E++          +D +F+C G
Sbjct: 192 LVVFGKHQEKLDLFSFADE---------TYLIDDIPEDLA---------VDHAFECVG 231

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 341

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 10/152 (6%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            VG  VK    GD V +   +         GG     P  +  G    +G  A   +  A
Sbjct: 95  AVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQA 154

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRR------ANIGPETNVLIMG-SGPIGLVTML 113
                 P ++S EE A    L VG  A R         + P  NVLI G SG +G + + 
Sbjct: 155 TQLMPKPKHLSWEEAA-AYML-VGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQ 212

Query: 114 AARAFGAPRIVIVDVDDYRLSVAKKLGADNIV 145
            ARA GA  + +V   + +    + LGA+ ++
Sbjct: 213 LARAAGANPVAVVS-SEEKAEYCRALGAEGVI 243

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score = 49.6 bits (118), Expect = 3e-07
 Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 21/222 (9%)

Query: 1   KVGSEVKTLVPGDRVALEPGI-SCWQCDYCKGGRYNLCPE------SKGLGSPPVHGCLA 53
           KVG  V     GDRV +   I SC  C+ C     N CP+      S+        G  +
Sbjct: 74  KVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYS 133

Query: 54  NQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPET--NVLIMGSGPIGL 109
           + +V        +PD +  + GA  +C  ++V     +   +  E+   + + G G +G 
Sbjct: 134 DVIVVDHRFVLSIPDGLPSDSGAPLLCAGITV-YSPMKYYGMTKESGKRLGVNGLGGLGH 192

Query: 110 VTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGI 169
           + +   +AFG    VI    +       +LGAD+ + V+T+ Q       K+++A+GT +
Sbjct: 193 IAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFL-VTTDSQ-------KMKEAVGT-M 243

Query: 170 DVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTP 211
           D   D       +    S  +  GK+  +G+  + + +P+ P
Sbjct: 244 DFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPLDLPIFP 285

Length = 375

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 46/190 (24%), Positives = 66/190 (34%), Gaps = 55/190 (28%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVH--GCLANQVVHP 59
           +GS VK+   GD V        W                   G+ P    G  A  VV P
Sbjct: 88  IGSGVKSFEIGDEV--------W-------------------GAVPPWSQGTHAEYVVVP 120

Query: 60  ADLCFKLPDNVSLEEGAMCEPLSVGVHAC-------RRANIGPET----NVLIMG-SGPI 107
            +   K P N+S EE A     S+                + P+      VLI+G SG +
Sbjct: 121 ENEVSKKPKNLSHEEAA-----SLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGV 175

Query: 108 GLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGT 167
           G   +   +A+GA   V        + + K LGAD+++       D   E  + +     
Sbjct: 176 GTFAIQLLKAWGA--HVTTTCSTDAIPLVKSLGADDVI-------DYNNEDFEEELTERG 226

Query: 168 GIDVSFDCAG 177
             DV  D  G
Sbjct: 227 KFDVILDTVG 236

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 49.3 bits (119), Expect = 3e-07
 Identities = 36/128 (28%), Positives = 46/128 (35%), Gaps = 42/128 (32%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VG  V  L  GDRV                          GL      G  A +VV  A
Sbjct: 36  RVGPGVTGLAVGDRVM-------------------------GLAP----GAFATRVVTDA 66

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGV------HA-CRRANIGPETNVLI-MGSGPIGLVTM 112
            L   +PD  S EE A     +V V      +A    A + P  +VLI   +G +G   +
Sbjct: 67  RLVVPIPDGWSFEEAA-----TVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAI 121

Query: 113 LAARAFGA 120
             AR  GA
Sbjct: 122 QLARHLGA 129

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 50/209 (23%), Positives = 74/209 (35%), Gaps = 50/209 (23%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            VG  VK    GDRV              + G Y                  A  V  PA
Sbjct: 70  AVGEGVKDFKVGDRVMG----------LTRFGGY------------------AEVVNVPA 101

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHA----CRRANIGPETNVLI-MGSGPIGLVTMLAA 115
           D  F LPD +S EE A        + A        N+ P  +VL+   +G +GL      
Sbjct: 102 DQVFPLPDGMSFEEAAAF--PVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLC 159

Query: 116 RAFGAPRIVIV-DVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD 174
           +    P + +V      +    K+ G  +++   T  QD  EEV+KI      G+D+  D
Sbjct: 160 KT--VPNVTVVGTASASKHEALKENGVTHVIDYRT--QDYVEEVKKIS---PEGVDIVLD 212

Query: 175 CAG---FNKTMSTALSATRAGGKVCLVGM 200
             G     K    +    +  G++ + G 
Sbjct: 213 ALGGEDTRK----SYDLLKPMGRLVVYGA 237

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 42/137 (30%), Positives = 59/137 (43%), Gaps = 14/137 (10%)

Query: 12  GDRVALEPGI-----SCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKL 66
           GDRV    GI     +C  C YC+ G  NLCP S+  G     G  A     PA   ++L
Sbjct: 81  GDRV----GIAWLRRTCGVCRYCRRGAENLCPASRYTGW-DTDGGYAEYTTVPAAFAYRL 135

Query: 67  PDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIV 124
           P      E A  +C  + +G  A  RA++ P   + + G G    +T   A A GA  + 
Sbjct: 136 PTGYDDVELAPLLCAGI-IGYRALLRASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVH 193

Query: 125 IVDVDDYRLSVAKKLGA 141
           ++        +A  LGA
Sbjct: 194 VMTRGAAARRLALALGA 210

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 44/183 (24%), Positives = 67/183 (36%), Gaps = 41/183 (22%)

Query: 1   KVGSEVKTLVPGDRV-ALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHP 59
            VGS+VK    GDRV AL PG           G Y                  A   V  
Sbjct: 72  DVGSDVKRFKEGDRVMALLPG-----------GGY------------------AEYAVAH 102

Query: 60  ADLCFKLPDNVSLEE-GAMCEPLSVGVHACRR-ANIGPETNVLIM--GSGPIGLVTMLAA 115
                 +P   + EE  A+ E         ++  ++    +VLI    SG +G      A
Sbjct: 103 KGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASG-VGTAAAQLA 161

Query: 116 RAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMG-TGIDVSFD 174
             +GA  I+    ++ ++   KKL A  ++       D      K++K  G  G+++  D
Sbjct: 162 EKYGAATIITTSSEE-KVDFCKKLAAIILI----RYPDEEGFAPKVKKLTGEKGVNLVLD 216

Query: 175 CAG 177
           C G
Sbjct: 217 CVG 219

Length = 334

>gnl|CDD|176200 cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 36/161 (22%)

Query: 1   KVGSEVK-TLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHP 59
           KVG + +    PG R  ++P +       C G  Y               G LA   + P
Sbjct: 76  KVGKKWQGKYKPGQRFVIQPALILPDGPSCPGYSYTYP------------GGLATYHIIP 123

Query: 60  ADL----CFKLPDNVSLEEGAMCEPLS--VG-VHACRRANIG---------PETNVLIMG 103
            ++    C  + +     E ++ EPLS  +G   A      G         P  N  I+G
Sbjct: 124 NEVMEQDCLLIYEGDGYAEASLVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILG 183

Query: 104 -SGPIGLVTMLAARAFGAP----RIVIVDVDDYRLSVAKKL 139
            +GP+GL  M    A   P     +V+ DV+D RL+ A++L
Sbjct: 184 GAGPMGL--MAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 410

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 25/119 (21%)

Query: 77  MCEPLSVGVH------ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD 130
           M + +S G+H            I P   VL +  G  G + +L A++ G   +V +D+ +
Sbjct: 27  MNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACG-TGDMALLLAKSVGTGEVVGLDISE 85

Query: 131 YRLSVA-KKLGADNIVKVSTNLQDIAEE--VEKIQKAMGTGIDVSFDCAGFNKTMSTAL 186
             L VA +KL    +  V   + D AE               D SFD      T+S  L
Sbjct: 86  SMLEVAREKLKKKGVQNVEFVVGD-AENLPFP----------DNSFDAV----TISFGL 129

Length = 238

>gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional

 Score = 39.3 bits (92), Expect = 9e-04
 Identities = 49/182 (26%), Positives = 72/182 (39%), Gaps = 39/182 (21%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKG--GRYNLCPESKGLGSPPVHGCLANQVVH 58
           KVGS VK +  GDRV            Y +   G Y+            VH   A++   
Sbjct: 71  KVGSGVKHIKVGDRVV-----------YAQSALGAYS-----------SVHNVPADKAA- 107

Query: 59  PADLCFKLPDNVSLEEGAMCEPLSVGVHACRRAN--IGP-ETNVLIMGSGPIGLVTMLAA 115
                  LPD +S E+ A      + V+   R    I P E  +    +G +GL+    A
Sbjct: 108 ------ILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWA 161

Query: 116 RAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC 175
           +A GA  I  V     +   AKK GA  ++      ++I E V++I    G  + V +D 
Sbjct: 162 KALGAKLIGTVGSAQ-KAQRAKKAGAWQVINYRE--ENIVERVKEITG--GKKVRVVYDS 216

Query: 176 AG 177
            G
Sbjct: 217 VG 218

Length = 327

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 44/175 (25%), Positives = 63/175 (36%), Gaps = 37/175 (21%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            VG  V  L  GD V    G                             G  A  V  P 
Sbjct: 51  AVGPHVTRLAVGDEVIAGTG--------------------------ESMGGHATLVTVPE 84

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVG---VHACRRANIGPETNVLIM-GSGPIGLVTMLAAR 116
           D   + P ++S EE   C    V    + A  RA +    ++LI   +G  GL+ +  AR
Sbjct: 85  DQVVRKPASLSFEEA--CALPVVFLTVIDAFARAGLAKGEHILIQTATGGTGLMAVQLAR 142

Query: 117 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDV 171
             GA        DD +L   K+LG  +++       D  EE+ ++    G G+DV
Sbjct: 143 LKGAEIYATASSDD-KLEYLKQLGVPHVINYVEE--DFEEEIMRLTG--GRGVDV 192

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 22/210 (10%)

Query: 1   KVGSEVKTLVPGDRVALEPGI-SCWQCDYCKGGRYNLCPESKGLGS--------PPVHGC 51
           +VGS+V     GD V +   +  C +C  CK      C   K + S         P  G 
Sbjct: 77  EVGSDVSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCN--KRIWSYNDVYTDGKPTQGG 134

Query: 52  LANQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGL 109
            A+ +V       K+P+ ++ E+ A  +C  ++V                 I+G G +G 
Sbjct: 135 FASAMVVDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGH 194

Query: 110 VTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGI 169
           + +  A+A G    VI   D  R    + LGAD+ +        ++ +  ++Q+A    +
Sbjct: 195 MGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYL--------VSSDAAEMQEA-ADSL 245

Query: 170 DVSFDCAGFNKTMSTALSATRAGGKVCLVG 199
           D   D       +   LS  +  GK+ L+G
Sbjct: 246 DYIIDTVPVFHPLEPYLSLLKLDGKLILMG 275

Length = 357

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	99.98
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	99.98
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	99.98
PLN02586	360	probable cinnamyl alcohol dehydrogenase	99.97
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	99.97
PLN02702	364	L-idonate 5-dehydrogenase	99.97
PLN02178	375	cinnamyl-alcohol dehydrogenase	99.97
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	99.97
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	99.97
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	99.97
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	99.97
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.97
PRK10083	339	putative oxidoreductase; Provisional	99.97
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	99.97
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.96
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	99.96
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.96
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	99.96
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	99.96
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.96
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.96
PLN02514	357	cinnamyl-alcohol dehydrogenase	99.96
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.96
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.96
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.96
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	99.96
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.95
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.95
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.95
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.95
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.95
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.95
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.95
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.95
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.95
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.95
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.95
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.95
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.95
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.95
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.95
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.94
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.94
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.94
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.94
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.94
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.94
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.94
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.94
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.94
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.94
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.94
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.94
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.94
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.93
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	99.93
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.93
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.93
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.93
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.92
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.92
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.92
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.92
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.91
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.91
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.91
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.9
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.9
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.9
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.89
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.89
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.89
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.88
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.88
PTZ00354	334	alcohol dehydrogenase; Provisional	99.88
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.87
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.87
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.87
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.86
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.86
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.85
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.85
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.85
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.85
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.85
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.84
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.84
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.84
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.84
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.84
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.83
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.83
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.83
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.83
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.82
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.82
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.82
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.82
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.82
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.8
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.8
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.8
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.79
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.78
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.78
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.78
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.76
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.76
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.66
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.62
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.36
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.26
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.09
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.91
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.81
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.75
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.69
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.68
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.61
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.51
PLN02494	477	adenosylhomocysteinase	98.5
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.49
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	98.47
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	98.45
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.41
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.39
PRK08324	681	short chain dehydrogenase; Validated	98.39
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.36
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.33
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.32
COG0300	265	DltE Short-chain dehydrogenases of various substra	98.31
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	98.3
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.28
PRK05993	277	short chain dehydrogenase; Provisional	98.28
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.24
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.24
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.2
PRK06182	273	short chain dehydrogenase; Validated	98.19
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.11
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.1
PTZ00075	476	Adenosylhomocysteinase; Provisional	98.09
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	98.08
PRK05693	274	short chain dehydrogenase; Provisional	98.06
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.06
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.01
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.01
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	97.92
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.89
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.89
PRK06139	330	short chain dehydrogenase; Provisional	97.88
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.87
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.86
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.84
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	97.83
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.8
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.78
PRK12742	237	oxidoreductase; Provisional	97.78
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.77
PRK08339	263	short chain dehydrogenase; Provisional	97.75
PRK07109	334	short chain dehydrogenase; Provisional	97.75
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.75
PRK07825	273	short chain dehydrogenase; Provisional	97.75
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	97.73
PRK07326	237	short chain dehydrogenase; Provisional	97.72
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.72
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.71
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.71
PRK12939	250	short chain dehydrogenase; Provisional	97.7
PRK05872	296	short chain dehydrogenase; Provisional	97.7
PRK08017	256	oxidoreductase; Provisional	97.69
PRK08265	261	short chain dehydrogenase; Provisional	97.69
PRK12828	239	short chain dehydrogenase; Provisional	97.68
PRK08267	260	short chain dehydrogenase; Provisional	97.68
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	97.68
PRK07814	263	short chain dehydrogenase; Provisional	97.68
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.68
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	97.67
PRK08177	225	short chain dehydrogenase; Provisional	97.66
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	97.66
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.65
PRK07576	264	short chain dehydrogenase; Provisional	97.65
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	97.64
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	97.64
PRK06500	249	short chain dehydrogenase; Provisional	97.63
PRK06484	520	short chain dehydrogenase; Validated	97.63
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	97.63
PRK14967	223	putative methyltransferase; Provisional	97.63
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.61
PRK09072	263	short chain dehydrogenase; Provisional	97.61
PRK12829	264	short chain dehydrogenase; Provisional	97.61
TIGR00438	188	rrmJ cell division protein FtsJ.	97.6
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	97.59
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.57
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.57
PLN03209	576	translocon at the inner envelope of chloroplast su	97.56
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.55
PRK06398	258	aldose dehydrogenase; Validated	97.55
PRK06180	277	short chain dehydrogenase; Provisional	97.55
PRK07062	265	short chain dehydrogenase; Provisional	97.54
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	97.54
PRK08589	272	short chain dehydrogenase; Validated	97.54
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	97.54
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.53
PRK07523	255	gluconate 5-dehydrogenase; Provisional	97.52
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	97.52
PRK07806	248	short chain dehydrogenase; Provisional	97.52
PRK06057	255	short chain dehydrogenase; Provisional	97.51
PRK07402	196	precorrin-6B methylase; Provisional	97.5
PRK08618	325	ornithine cyclodeaminase; Validated	97.49
PRK09242	257	tropinone reductase; Provisional	97.49
PRK08085	254	gluconate 5-dehydrogenase; Provisional	97.49
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.48
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	97.48
PRK00811	283	spermidine synthase; Provisional	97.48
PRK07832	272	short chain dehydrogenase; Provisional	97.48
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.47
PRK06179	270	short chain dehydrogenase; Provisional	97.47
PRK06101	240	short chain dehydrogenase; Provisional	97.46
PRK08643	256	acetoin reductase; Validated	97.46
PRK07063	260	short chain dehydrogenase; Provisional	97.44
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	97.44
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.44
PRK10538	248	malonic semialdehyde reductase; Provisional	97.44
PRK08862	227	short chain dehydrogenase; Provisional	97.43
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.43
PRK01581	374	speE spermidine synthase; Validated	97.42
PRK07060	245	short chain dehydrogenase; Provisional	97.42
PRK05884	223	short chain dehydrogenase; Provisional	97.41
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.41
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	97.41
PRK07856	252	short chain dehydrogenase; Provisional	97.4
PRK04457	262	spermidine synthase; Provisional	97.4
PRK06949	258	short chain dehydrogenase; Provisional	97.39
PRK05876	275	short chain dehydrogenase; Provisional	97.39
PRK06198	260	short chain dehydrogenase; Provisional	97.39
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.39
PRK09186	256	flagellin modification protein A; Provisional	97.39
PRK05866	293	short chain dehydrogenase; Provisional	97.37
PRK06128	300	oxidoreductase; Provisional	97.36
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.35
PRK07774	250	short chain dehydrogenase; Provisional	97.34
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	97.34
PRK12747	252	short chain dehydrogenase; Provisional	97.34
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	97.33
PRK08263	275	short chain dehydrogenase; Provisional	97.31
PRK07904	253	short chain dehydrogenase; Provisional	97.3
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	97.3
PRK06124	256	gluconate 5-dehydrogenase; Provisional	97.29
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	97.29
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.29
PRK08628	258	short chain dehydrogenase; Provisional	97.29
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.29
PRK12743	256	oxidoreductase; Provisional	97.28
PLN02823	336	spermine synthase	97.28
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.28
PRK12937	245	short chain dehydrogenase; Provisional	97.28
PLN02366	308	spermidine synthase	97.27
PRK06484	520	short chain dehydrogenase; Validated	97.27
PRK07831	262	short chain dehydrogenase; Provisional	97.27
PRK07985	294	oxidoreductase; Provisional	97.27
PRK06701	290	short chain dehydrogenase; Provisional	97.26
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	97.26
PRK07067	257	sorbitol dehydrogenase; Provisional	97.25
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.24
PRK06196	315	oxidoreductase; Provisional	97.24
PRK06841	255	short chain dehydrogenase; Provisional	97.24
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.23
PRK05867	253	short chain dehydrogenase; Provisional	97.23
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	97.22
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	97.21
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	97.21
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	97.2
PRK07677	252	short chain dehydrogenase; Provisional	97.2
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.2
PRK06953	222	short chain dehydrogenase; Provisional	97.19
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.19
PLN02780	320	ketoreductase/ oxidoreductase	97.19
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	97.19
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.19
PRK07024	257	short chain dehydrogenase; Provisional	97.18
PRK07340	304	ornithine cyclodeaminase; Validated	97.18
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.17
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	97.17
PRK12938	246	acetyacetyl-CoA reductase; Provisional	97.16
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	97.14
PRK06523	260	short chain dehydrogenase; Provisional	97.14
PRK05650	270	short chain dehydrogenase; Provisional	97.14
PRK06125	259	short chain dehydrogenase; Provisional	97.14
PRK12746	254	short chain dehydrogenase; Provisional	97.14
PRK07453	322	protochlorophyllide oxidoreductase; Validated	97.13
PRK06940	275	short chain dehydrogenase; Provisional	97.12
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	97.12
PLN02244	340	tocopherol O-methyltransferase	97.11
PRK07478	254	short chain dehydrogenase; Provisional	97.11
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	97.11
PRK04148	134	hypothetical protein; Provisional	97.11
PLN02253	280	xanthoxin dehydrogenase	97.11
PRK05855	582	short chain dehydrogenase; Validated	97.11
PRK05854	313	short chain dehydrogenase; Provisional	97.11
PRK04266	226	fibrillarin; Provisional	97.11
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	97.1
PRK09291	257	short chain dehydrogenase; Provisional	97.1
PRK00536	262	speE spermidine synthase; Provisional	97.1
CHL00194	317	ycf39 Ycf39; Provisional	97.09
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	97.09
PRK07791	286	short chain dehydrogenase; Provisional	97.08
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.08
PRK08703	239	short chain dehydrogenase; Provisional	97.08
PLN03139	386	formate dehydrogenase; Provisional	97.08
PRK11207	197	tellurite resistance protein TehB; Provisional	97.07
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	97.07
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	97.07
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	97.07
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.07
PRK06194	287	hypothetical protein; Provisional	97.06
PLN03075	296	nicotianamine synthase; Provisional	97.06
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.06
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.05
PRK15116	268	sulfur acceptor protein CsdL; Provisional	97.05
PLN00203	519	glutamyl-tRNA reductase	97.05
PRK07574	385	formate dehydrogenase; Provisional	97.04
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.04
COG2910	211	Putative NADH-flavin reductase [General function p	97.04
PRK08340	259	glucose-1-dehydrogenase; Provisional	97.03
PRK07454	241	short chain dehydrogenase; Provisional	97.03
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	97.03
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	97.03
PRK06482	276	short chain dehydrogenase; Provisional	97.03
PRK06172	253	short chain dehydrogenase; Provisional	97.03
COG4122	219	Predicted O-methyltransferase [General function pr	97.02
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	97.02
PRK07577	234	short chain dehydrogenase; Provisional	97.02
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	97.01
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	97.01
KOG0725	270	consensus Reductases with broad range of substrate	97.01
PRK06483	236	dihydromonapterin reductase; Provisional	97.0
PLN02233	261	ubiquinone biosynthesis methyltransferase	96.99
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.99
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	96.99
PRK05717	255	oxidoreductase; Validated	96.99
PRK08936	261	glucose-1-dehydrogenase; Provisional	96.98
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.97
PRK08277	278	D-mannonate oxidoreductase; Provisional	96.97
PRK06138	252	short chain dehydrogenase; Provisional	96.97
PLN02928	347	oxidoreductase family protein	96.97
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	96.96
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.96
PRK07890	258	short chain dehydrogenase; Provisional	96.96
PRK08317	241	hypothetical protein; Provisional	96.96
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	96.95
PRK05875	276	short chain dehydrogenase; Provisional	96.95
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.95
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	96.95
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.95
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	96.95
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.94
PRK03612	521	spermidine synthase; Provisional	96.94
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	96.94
PRK08226	263	short chain dehydrogenase; Provisional	96.94
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.93
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.93
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.93
PRK07074	257	short chain dehydrogenase; Provisional	96.93
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.93
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	96.93
PLN02476	278	O-methyltransferase	96.92
PRK07035	252	short chain dehydrogenase; Provisional	96.92
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.91
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	96.91
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	96.9
PRK06914	280	short chain dehydrogenase; Provisional	96.9
PRK08328	231	hypothetical protein; Provisional	96.9
PRK13243	333	glyoxylate reductase; Reviewed	96.89
PRK06181	263	short chain dehydrogenase; Provisional	96.89
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.88
PRK06141	314	ornithine cyclodeaminase; Validated	96.86
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	96.86
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	96.86
PRK06197	306	short chain dehydrogenase; Provisional	96.85
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.85
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.85
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.85
PRK08213	259	gluconate 5-dehydrogenase; Provisional	96.84
PRK14903	431	16S rRNA methyltransferase B; Provisional	96.84
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	96.83
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	96.83
PRK12824	245	acetoacetyl-CoA reductase; Provisional	96.83
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	96.83
PRK08251	248	short chain dehydrogenase; Provisional	96.82
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	96.82
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.81
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	96.81
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.8
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	96.8
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	96.79
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.78
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	96.78
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	96.78
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	96.78
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.78
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	96.78
PRK08264	238	short chain dehydrogenase; Validated	96.77
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.77
PRK06114	254	short chain dehydrogenase; Provisional	96.77
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.76
PRK12744	257	short chain dehydrogenase; Provisional	96.74
PRK07069	251	short chain dehydrogenase; Validated	96.74
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	96.73
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	96.73
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.72
PRK06720	169	hypothetical protein; Provisional	96.71
PRK07417	279	arogenate dehydrogenase; Reviewed	96.71
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.71
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	96.7
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	96.7
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.7
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	96.7
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	96.69
PRK07097	265	gluconate 5-dehydrogenase; Provisional	96.69
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.67
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	96.66
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	96.65
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	96.63
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.62
PRK14901	434	16S rRNA methyltransferase B; Provisional	96.62
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	96.62
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	96.62
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	96.62
PRK09134	258	short chain dehydrogenase; Provisional	96.62
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.61
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	96.61
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	96.61
PRK10669	558	putative cation:proton antiport protein; Provision	96.6
KOG1208	314	consensus Dehydrogenases with different specificit	96.59
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.59
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.58
PRK07775	274	short chain dehydrogenase; Provisional	96.58
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.58
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	96.56
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	96.56
TIGR02415	254	23BDH acetoin reductases. One member of this famil	96.56
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	96.55
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.55
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	96.54
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.54
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.53
PRK08303	305	short chain dehydrogenase; Provisional	96.53
PRK10258	251	biotin biosynthesis protein BioC; Provisional	96.53
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	96.52
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.5
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	96.5
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	96.5
PRK08278	273	short chain dehydrogenase; Provisional	96.49
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	96.48
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.48
PRK08223	287	hypothetical protein; Validated	96.47
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.47
PRK14902	444	16S rRNA methyltransferase B; Provisional	96.47
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	96.46
PRK07102	243	short chain dehydrogenase; Provisional	96.45
PRK06436	303	glycerate dehydrogenase; Provisional	96.45
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.44
PRK06947	248	glucose-1-dehydrogenase; Provisional	96.43
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.41
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.41
PRK12367	245	short chain dehydrogenase; Provisional	96.41
PRK08291	330	ectoine utilization protein EutC; Validated	96.4
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	96.4
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	96.39
PLN02490	340	MPBQ/MSBQ methyltransferase	96.39
PRK10901	427	16S rRNA methyltransferase B; Provisional	96.39
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	96.39
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.39
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.38
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	96.38
PRK07411	390	hypothetical protein; Validated	96.37
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	96.36
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	96.36
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	96.35
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.35
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.35
PRK13403	335	ketol-acid reductoisomerase; Provisional	96.35
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	96.33

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.8e-41  Score=264.89  Aligned_cols=213  Identities=54%  Similarity=0.909  Sum_probs=190.0

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEP   80 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~   80 (216)
                      ++|+.|+++|+||||++.|..+|+.|+.|+.|++|.|+...+.+.++.+|++++|++.+++.++++|++++++++|+++|
T Consensus        75 evG~~Vk~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~eP  154 (354)
T KOG0024|consen   75 EVGDEVKHLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGALIEP  154 (354)
T ss_pred             hhcccccccccCCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeCCCCCchhhcccccc
Confidence            58999999999999999999999999999999999999999988878899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  160 (216)
                      ++++|||.+.++++.|.++||+|+|++|+++...|+++|+..|++++..+.+++++++||++.+....... +..+..+.
T Consensus       155 LsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~-~~~~~~~~  233 (354)
T KOG0024|consen  155 LSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKS-SPQELAEL  233 (354)
T ss_pred             hhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccc-cHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999877643322 22222222


Q ss_pred             HHHHcC-CCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhh
Q 048013          161 IQKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA  214 (216)
Q Consensus       161 ~~~~~~-~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  214 (216)
                      +....+ ..+|+.|||+|.....+.++..++.+|++++.|+....++||+..+..
T Consensus       234 v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~~v~~  288 (354)
T KOG0024|consen  234 VEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGAEEIQFPIIDVAL  288 (354)
T ss_pred             HHhhccccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccCCCccccChhhhhh
Confidence            222223 569999999999888899999999999999999988888888876654

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=1.1e-40  Score=266.94  Aligned_cols=202  Identities=34%  Similarity=0.527  Sum_probs=179.3

Q ss_pred             CCCCCCCCCCCCCEEEE-cCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-
Q 048013            1 KVGSEVKTLVPGDRVAL-EPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-   78 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~-~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-   78 (216)
                      ++|++|+.||+||||.+ ....+|++|++|+.|++++|++....+. +.+|+|+||+++|+.+++++|+++++++||.+ 
T Consensus        71 ~vG~~V~~~k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy-~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApll  149 (339)
T COG1064          71 EVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGY-TTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLL  149 (339)
T ss_pred             EecCCCccCCCCCEEEecCccCCCCCCccccCcccccCCCccccce-eecCcceeEEEEchHHeEECCCCCChhhhhhhh
Confidence            58999999999999998 7789999999999999999999988888 68999999999999999999999999999966 


Q ss_pred             hhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           79 EPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        79 ~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      ....|+|++++..+++||++|+|+|+|++|++++|+|+++|++ |++++++++|++.++++|++.+++-.  +++..+.+
T Consensus       150 CaGiT~y~alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~-Via~~~~~~K~e~a~~lGAd~~i~~~--~~~~~~~~  226 (339)
T COG1064         150 CAGITTYRALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAE-VIAITRSEEKLELAKKLGADHVINSS--DSDALEAV  226 (339)
T ss_pred             cCeeeEeeehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCe-EEEEeCChHHHHHHHHhCCcEEEEcC--CchhhHHh
Confidence            4677899999999999999999999999999999999999985 99999999999999999999988742  34544444


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC-CC-Ccccchhhhh
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-RE-MTVPLTPAAA  214 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~-~~~~~~~~~~  214 (216)
                      ++       .+|++||+++ +..+..++++|+++|+++++|++. +. ..++...+++
T Consensus       227 ~~-------~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~  276 (339)
T COG1064         227 KE-------IADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLIL  276 (339)
T ss_pred             Hh-------hCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhh
Confidence            33       2999999999 789999999999999999999884 43 4566666654

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=100.00  E-value=1.2e-34  Score=232.52  Aligned_cols=209  Identities=24%  Similarity=0.363  Sum_probs=173.7

Q ss_pred             CCCCCCC------CCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCC------CCCCccceeEEecCC-ceEECC
Q 048013            1 KVGSEVK------TLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP------PVHGCLANQVVHPAD-LCFKLP   67 (216)
Q Consensus         1 ~vG~~v~------~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~-~~~~ip   67 (216)
                      ++|++|+      +|++||||++.+..+|++|.+|+.++++.|++...+|..      ..+|+|+||+.+|+. .++++|
T Consensus        12 ~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~v~~~~~~~~lP   91 (280)
T TIGR03366        12 ALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCHLPAGTAIVPVP   91 (280)
T ss_pred             EeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeEEecCCCcEEECC
Confidence            4789998      899999999999999999999999999999987665531      246999999999997 799999


Q ss_pred             CCCCchhhhcch-hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEe
Q 048013           68 DNVSLEEGAMCE-PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVK  146 (216)
Q Consensus        68 ~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~  146 (216)
                      +++++++++.+. .+.++|++++.....++++|+|+|+|++|++++|+|+.+|+++|++++++++++++++++|++.+++
T Consensus        92 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~  171 (280)
T TIGR03366        92 DDLPDAVAAPAGCATATVMAALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAE  171 (280)
T ss_pred             CCCCHHHhhHhhhHHHHHHHHHHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecC
Confidence            999999988665 5678899997777779999999999999999999999999976888899999999999999988766


Q ss_pred             CCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC--CCCcccchhhhhc
Q 048013          147 VSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH--REMTVPLTPAAAS  215 (216)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~~~~~~~~~~~  215 (216)
                      .+    +..+.+.++  +.+.++|++||++|.+..++.++++++++|+++.+|+..  ...++++..+++|
T Consensus       172 ~~----~~~~~~~~~--~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~i~~~~~~~~  236 (280)
T TIGR03366       172 PE----VLAERQGGL--QNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPEQVVRR  236 (280)
T ss_pred             ch----hhHHHHHHH--hCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCceeeCHHHHHhC
Confidence            32    122334443  246689999999998778899999999999999999643  3346666655543

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=4e-34  Score=235.63  Aligned_cols=203  Identities=31%  Similarity=0.529  Sum_probs=171.8

Q ss_pred             CCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCC----CCCCccceeEEecCCceEECCCCCCchhhhcchh
Q 048013            5 EVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP----PVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEP   80 (216)
Q Consensus         5 ~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~   80 (216)
                      +|+.|++||||++.+..+|++|++|+.+++++|++...+|..    ..+|+|+||+.+|+..++++|++++++++++..+
T Consensus        75 ~v~~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~  154 (343)
T PRK09880         75 DSSGLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMAFAEP  154 (343)
T ss_pred             cCccCCCCCEEEECCCCCCcCChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHHeEECCCCCCHHHHHhhcH
Confidence            467899999999999999999999999999999987665531    2469999999999999999999999988887788


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  160 (216)
                      ++++|++++.....++++|+|+|+|++|++++|+|+.+|+++|+++++++++++.++++|++.++++++  +++.    +
T Consensus       155 ~~~a~~al~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~--~~~~----~  228 (343)
T PRK09880        155 LAVAIHAAHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQN--DDLD----H  228 (343)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCc--ccHH----H
Confidence            999999998777778999999999999999999999999976889999999999999999998887543  2332    2


Q ss_pred             HHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhh
Q 048013          161 IQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA  214 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  214 (216)
                      +.+. ..++|++||++|.+..+..++++++++|+++.+|+.....++++..+++
T Consensus       229 ~~~~-~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~  281 (343)
T PRK09880        229 YKAE-KGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGGAPPEFPMMTLIV  281 (343)
T ss_pred             Hhcc-CCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCHHHHHh
Confidence            2222 2369999999998777889999999999999999866555666655543

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=5.2e-34  Score=234.91  Aligned_cols=210  Identities=36%  Similarity=0.634  Sum_probs=169.4

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCC----CCCCccceeEEecCCceEEC-CCCCCchhh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP----PVHGCLANQVVHPADLCFKL-PDNVSLEEG   75 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~i-p~~~~~~~a   75 (216)
                      ++| .++.+++||||++.|..+|++|++|+.|++++|++..+++..    +.+|+|+||+.+|.+..+.+ |++++++.+
T Consensus        69 evG-~~~~~~~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~~~~~a  147 (350)
T COG1063          69 EVG-VVRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGIDEEAA  147 (350)
T ss_pred             Eec-cccCCCCCCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCCChhhh
Confidence            467 667799999999999999999999999999999976655542    25799999999997666655 677688888


Q ss_pred             hcchhhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-cCCCEEEeCCCCccc
Q 048013           76 AMCEPLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-LGADNIVKVSTNLQD  153 (216)
Q Consensus        76 a~~~~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~  153 (216)
                      ++.+++++++++. .....+++.+++|+|+|++|++++++++.+|+.+|+++|.++++++++++ .+++.+.+...  ++
T Consensus       148 al~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~--~~  225 (350)
T COG1063         148 ALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSE--DD  225 (350)
T ss_pred             hhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCcc--cc
Confidence            8999999998774 44445555699999999999999999999999999999999999999998 55555544221  13


Q ss_pred             HHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCC-cccchhhhhc
Q 048013          154 IAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREM-TVPLTPAAAS  215 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~~  215 (216)
                      ....+.++  +.+.++|++|||+|.+..+..++++++++|+++++|+..... .++...++.|
T Consensus       226 ~~~~~~~~--t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~k  286 (350)
T COG1063         226 AGAEILEL--TGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSK  286 (350)
T ss_pred             HHHHHHHH--hCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCccCccCHHHHHhc
Confidence            33334343  456799999999999888899999999999999999887765 5666555543

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=6.2e-34  Score=224.47  Aligned_cols=208  Identities=30%  Similarity=0.513  Sum_probs=178.0

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCC-------C-CC----------CCCC--CccceeEEecC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKG-------L-GS----------PPVH--GCLANQVVHPA   60 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~-------~-~~----------~~~~--g~~~~~~~~~~   60 (216)
                      +||++|+++++||+|++.+...|++|.+|.+|++++|.....       . |.          ....  ++|+||..+++
T Consensus        69 ~VG~gVt~vkpGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~  148 (366)
T COG1062          69 AVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHE  148 (366)
T ss_pred             EecCCccccCCCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecc
Confidence            589999999999999999999999999999999999984321       1 10          0112  49999999999


Q ss_pred             CceEECCCCCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH
Q 048013           61 DLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK  138 (216)
Q Consensus        61 ~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~  138 (216)
                      ..+.++++..+++.++++- ...|.+.+. +.+++++|+++.|.|.|++|+++||-|+..|+.+|+++|.+++|++++++
T Consensus       149 ~s~vki~~~~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~  228 (366)
T COG1062         149 ISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK  228 (366)
T ss_pred             cceEECCCCCCccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence            9999999999999999875 556677765 88999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhh
Q 048013          139 LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPA  212 (216)
Q Consensus       139 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  212 (216)
                      ||++..++..+.. +..+.++++   .++|.|++|||+|+.+.+++++++++++|+.+++|+......++++++
T Consensus       229 fGAT~~vn~~~~~-~vv~~i~~~---T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~  298 (366)
T COG1062         229 FGATHFVNPKEVD-DVVEAIVEL---TDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPF  298 (366)
T ss_pred             cCCceeecchhhh-hHHHHHHHh---cCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCCceeecChH
Confidence            9999998743221 455555555   466999999999999999999999999999999998877666666554

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=2e-32  Score=225.06  Aligned_cols=197  Identities=34%  Similarity=0.603  Sum_probs=169.9

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCC-CCCCCCCCccceeEEecCCceEECCCCCCchhhhcch
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKG-LGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~   79 (216)
                      ++|++|+.+++||+|++.+..+|++|+.|+.|++++|.+... +|. ..+|+|+||+.+|++.++++|+++++++++.+.
T Consensus        68 ~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~-~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~  146 (339)
T cd08239          68 AVGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGW-NRDGGHAEYMLVPEKTLIPLPDDLSFADGALLL  146 (339)
T ss_pred             EECCCCccCCCCCEEEECCCCCCCCChhhhCcCcccCcCccccccc-CCCCcceeEEEechHHeEECCCCCCHHHhhhhc
Confidence            368899999999999999999999999999999999987654 443 457999999999999999999999999988664


Q ss_pred             -hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           80 -PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        80 -~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                       ++.++|++++...++++++|+|+|+|++|++++|+|+.+|+++|+++++++++++.++++|++.+++++.  .+ .+.+
T Consensus       147 ~~~~ta~~~l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~--~~-~~~~  223 (339)
T cd08239         147 CGIGTAYHALRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQ--DD-VQEI  223 (339)
T ss_pred             chHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCc--ch-HHHH
Confidence             7889999998888899999999999999999999999999976888999999999999999988877532  23 3444


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      .++  +.++++|++||++|+......++++++++|+++.+|....
T Consensus       224 ~~~--~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  266 (339)
T cd08239         224 REL--TSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGGE  266 (339)
T ss_pred             HHH--hCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCCC
Confidence            444  2456899999999997777889999999999999997543

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.3e-33  Score=220.57  Aligned_cols=208  Identities=27%  Similarity=0.436  Sum_probs=170.2

Q ss_pred             CCCCCCCCCCCCCEEEEcC-CcCCCCCcchhCCCCCCCCCCC--CCCC----CCCCCccceeEEecCCceEECCCCCCch
Q 048013            1 KVGSEVKTLVPGDRVALEP-GISCWQCDYCKGGRYNLCPESK--GLGS----PPVHGCLANQVVHPADLCFKLPDNVSLE   73 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~-~~~~~~c~~~~~~~~~~~~~~~--~~~~----~~~~g~~~~~~~~~~~~~~~ip~~~~~~   73 (216)
                      ++|++|+.|++||||-+-+ +..|.+|++|.++.+++|++.-  ..+.    ..+.|+|++|+++++.++++||++++.+
T Consensus        79 kvGs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~  158 (360)
T KOG0023|consen   79 KVGSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIPENLPLA  158 (360)
T ss_pred             EECCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEECCCCCChh
Confidence            4799999999999998764 6899999999999999999543  2232    2355779999999999999999999999


Q ss_pred             hhhcch-hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh-HHHHHHHHcCCCEEEeCCCCc
Q 048013           74 EGAMCE-PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD-YRLSVAKKLGADNIVKVSTNL  151 (216)
Q Consensus        74 ~aa~~~-~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~-~~~~~~~~~g~~~~~~~~~~~  151 (216)
                      .||.+. ...|.|..+...++.||+++.|.|+|++|++++|+|+++|.+ |+++++++ +|.+.++.||++..++. ..+
T Consensus       159 ~aAPlLCaGITvYspLk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~r-V~vis~~~~kkeea~~~LGAd~fv~~-~~d  236 (360)
T KOG0023|consen  159 SAAPLLCAGITVYSPLKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMR-VTVISTSSKKKEEAIKSLGADVFVDS-TED  236 (360)
T ss_pred             hccchhhcceEEeehhHHcCCCCCcEEEEecCcccchHHHHHHHHhCcE-EEEEeCCchhHHHHHHhcCcceeEEe-cCC
Confidence            999665 455789999998999999999999977999999999999995 99998887 55667788999987663 234


Q ss_pred             ccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhhc
Q 048013          152 QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAS  215 (216)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~  215 (216)
                      +++.+.+.+   +...++|-+.+-  ....+..++++|+++|+++++|++..+..+++.+++.+
T Consensus       237 ~d~~~~~~~---~~dg~~~~v~~~--a~~~~~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~  295 (360)
T KOG0023|consen  237 PDIMKAIMK---TTDGGIDTVSNL--AEHALEPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILG  295 (360)
T ss_pred             HHHHHHHHH---hhcCcceeeeec--cccchHHHHHHhhcCCEEEEEeCcCCcccccchhhhcc
Confidence            566555544   334456666554  44677899999999999999999998888888887754

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.1e-32  Score=214.49  Aligned_cols=209  Identities=28%  Similarity=0.456  Sum_probs=179.0

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCC--------C------C-------CCCCccceeEEec
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG--------S------P-------PVHGCLANQVVHP   59 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~--------~------~-------~~~g~~~~~~~~~   59 (216)
                      ++|++|+.+++||+|++.....|++|.+|+.++.|+|+......        .      .       ....+|+||.+++
T Consensus        75 SvGegV~~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~  154 (375)
T KOG0022|consen   75 SVGEGVTTVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVD  154 (375)
T ss_pred             EecCCccccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEee
Confidence            47999999999999999999999999999999999997543221        1      0       1124899999999


Q ss_pred             CCceEECCCCCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH
Q 048013           60 ADLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK  137 (216)
Q Consensus        60 ~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~  137 (216)
                      ...+.+|++..+++.++++. .++|+|.|. +.+++++|+++.|.|.|++|+++++-|++.|+.++|.+|.|++|.+.++
T Consensus       155 ~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak  234 (375)
T KOG0022|consen  155 DISVAKIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK  234 (375)
T ss_pred             cceeEecCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH
Confidence            99999999999999999775 788898775 8899999999999999999999999999999999999999999999999


Q ss_pred             HcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcC-CEEEEeccCCCCCcccchhh
Q 048013          138 KLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHREMTVPLTPA  212 (216)
Q Consensus       138 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~  212 (216)
                      +||+++.++..+......+.+.++   .+.|+|+.|||+|+.+.+++++.+++.+ |+-+++|+.+....++++++
T Consensus       235 ~fGaTe~iNp~d~~~~i~evi~Em---TdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~  307 (375)
T KOG0022|consen  235 EFGATEFINPKDLKKPIQEVIIEM---TDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPF  307 (375)
T ss_pred             hcCcceecChhhccccHHHHHHHH---hcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchh
Confidence            999999988542222234444444   5789999999999999999999999988 99999998887666666654

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=3.9e-32  Score=226.76  Aligned_cols=201  Identities=28%  Similarity=0.455  Sum_probs=169.5

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCC-----------------------CCCCccceeEE
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP-----------------------PVHGCLANQVV   57 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~-----------------------~~~g~~~~~~~   57 (216)
                      ++|++|+.|++||||++.+..+|++|.+|..++++.|++....+..                       ..+|+|+||+.
T Consensus        79 ~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~  158 (381)
T PLN02740         79 SVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTV  158 (381)
T ss_pred             EeCCCCCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEE
Confidence            4688899999999999999999999999999999999876432110                       02589999999


Q ss_pred             ecCCceEECCCCCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHH
Q 048013           58 HPADLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV  135 (216)
Q Consensus        58 ~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~  135 (216)
                      +|.+.++++|+++++++++.+. ++.++|+++ +..+++++++|||+|+|++|++++|+|+.+|+.+|+++++++++++.
T Consensus       159 v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~  238 (381)
T PLN02740        159 LDSACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEK  238 (381)
T ss_pred             EehHHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHH
Confidence            9999999999999999888664 678899886 66789999999999999999999999999999668999999999999


Q ss_pred             HHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcC-CEEEEeccCCCC
Q 048013          136 AKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHRE  204 (216)
Q Consensus       136 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~  204 (216)
                      ++++|++.++++.+.++++.+.++++.  .+ ++|++||++|....+..++.+++++ |+++++|+....
T Consensus       239 a~~~Ga~~~i~~~~~~~~~~~~v~~~~--~~-g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~  305 (381)
T PLN02740        239 GKEMGITDFINPKDSDKPVHERIREMT--GG-GVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTP  305 (381)
T ss_pred             HHHcCCcEEEecccccchHHHHHHHHh--CC-CCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCC
Confidence            999999888775432234656666553  33 8999999999878889999999996 999999976543

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=7.1e-32  Score=224.23  Aligned_cols=199  Identities=29%  Similarity=0.459  Sum_probs=167.2

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCC---CCCC-----------------CCCCccceeEEecC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKG---LGSP-----------------PVHGCLANQVVHPA   60 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~-----------------~~~g~~~~~~~~~~   60 (216)
                      ++|++|+.|++||||++.+..+|++|++|+.|++++|.+...   +|..                 ...|+|+||+.+|+
T Consensus        69 ~vG~~v~~~~~GdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~  148 (368)
T TIGR02818        69 AVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPE  148 (368)
T ss_pred             EECCCCccCCCCCEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEech
Confidence            368899999999999999889999999999999999986421   1110                 02479999999999


Q ss_pred             CceEECCCCCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH
Q 048013           61 DLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK  138 (216)
Q Consensus        61 ~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~  138 (216)
                      +.++++|+++++++++.+. ++.++|+++ +...++++++|||+|+|++|++++|+|+.+|+.+|+++++++++++.+++
T Consensus       149 ~~~~~lP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~  228 (368)
T TIGR02818       149 ISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK  228 (368)
T ss_pred             hheEECCCCCCHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            9999999999999988765 778899998 56789999999999999999999999999999669999999999999999


Q ss_pred             cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcC-CEEEEeccCC
Q 048013          139 LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGH  202 (216)
Q Consensus       139 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~  202 (216)
                      +|++.++++.+.+.++.+.+++++  . .++|++||++|.+..+..++++++++ |+++.+|+..
T Consensus       229 ~Ga~~~i~~~~~~~~~~~~v~~~~--~-~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~  290 (368)
T TIGR02818       229 LGATDCVNPNDYDKPIQEVIVEIT--D-GGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAG  290 (368)
T ss_pred             hCCCeEEcccccchhHHHHHHHHh--C-CCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccC
Confidence            999988775432334555555553  3 38999999999877888999999886 9999999754

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=1.2e-31  Score=223.16  Aligned_cols=208  Identities=31%  Similarity=0.493  Sum_probs=171.7

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCC---CCC-----------------CCCCccceeEEecC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGL---GSP-----------------PVHGCLANQVVHPA   60 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~---~~~-----------------~~~g~~~~~~~~~~   60 (216)
                      ++|++|+.+++||||++.+...|++|+.|+.|++++|.+....   |..                 ...|+|+||+.+|+
T Consensus        75 ~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~  154 (371)
T cd08281          75 EVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSR  154 (371)
T ss_pred             EeCCCCCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEecc
Confidence            4788999999999999988889999999999999999875321   100                 01379999999999


Q ss_pred             CceEECCCCCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH
Q 048013           61 DLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK  138 (216)
Q Consensus        61 ~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~  138 (216)
                      ..++++|+++++++++.+. ++.++|+++ +..+++++++|+|+|+|++|++++|+|+..|+++|+++++++++++.+++
T Consensus       155 ~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~  234 (371)
T cd08281         155 RSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE  234 (371)
T ss_pred             cceEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence            9999999999999998765 677899887 66789999999999999999999999999999658999999999999999


Q ss_pred             cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC--CCcccchhhh
Q 048013          139 LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR--EMTVPLTPAA  213 (216)
Q Consensus       139 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~  213 (216)
                      +|++.++++.  .+++.+.+++++   +.++|++||++|....+..++++++++|+++.+|....  ..+++...++
T Consensus       235 ~Ga~~~i~~~--~~~~~~~i~~~~---~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~  306 (371)
T cd08281         235 LGATATVNAG--DPNAVEQVRELT---GGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPEARLSVPALSLV  306 (371)
T ss_pred             cCCceEeCCC--chhHHHHHHHHh---CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCCCceeeecHHHHh
Confidence            9998887753  345555565542   33899999999987788999999999999999997543  2445554444

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-31  Score=220.87  Aligned_cols=201  Identities=32%  Similarity=0.561  Sum_probs=171.4

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEP   80 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~   80 (216)
                      ++|++|++|++||+|+..+..+|++|++|..|++++|.+...++. ...|+|+||+.+|+..++++|+++++++++.+++
T Consensus        67 ~vG~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~-~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~~  145 (347)
T PRK10309         67 AVGSGVDDLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGS-RRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIEP  145 (347)
T ss_pred             EeCCCCCCCCCCCEEEECCCcCCCCCcchhCcCcccCCCcceecc-CCCCccceeEEeehHHeEECcCCCCHHHhhhhhH
Confidence            468899999999999999999999999999999999987655554 4579999999999999999999999999998767


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  160 (216)
                      +++++++++...++++++++|+|+|++|++++|+|+.+|+++|+++++++++++.++++|++.+++.+.  .+ .+.+.+
T Consensus       146 ~~~~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~--~~-~~~~~~  222 (347)
T PRK10309        146 ITVGLHAFHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSRE--MS-APQIQS  222 (347)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcc--cC-HHHHHH
Confidence            777888887778899999999999999999999999999976788899999999999999988776532  22 233444


Q ss_pred             HHHHcCCCcc-EEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcc
Q 048013          161 IQKAMGTGID-VSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTV  207 (216)
Q Consensus       161 ~~~~~~~~~d-~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~  207 (216)
                      +  +.+.++| ++|||+|....+..++++++++|+++++|....+.++
T Consensus       223 ~--~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~  268 (347)
T PRK10309        223 V--LRELRFDQLILETAGVPQTVELAIEIAGPRAQLALVGTLHHDLHL  268 (347)
T ss_pred             H--hcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCccc
Confidence            3  2456788 9999999877889999999999999999976554434

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=2.3e-31  Score=221.77  Aligned_cols=204  Identities=24%  Similarity=0.402  Sum_probs=167.8

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCC----------------CCC----CCCCccceeEEecC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGL----------------GSP----PVHGCLANQVVHPA   60 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~----------------~~~----~~~g~~~~~~~~~~   60 (216)
                      ++|++|++|++||||+..+..+|++|.+|+.+++++|++....                |..    ...|+|+||+.+|+
T Consensus        77 ~vG~~v~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~  156 (378)
T PLN02827         77 SIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHS  156 (378)
T ss_pred             EcCCCCcccCCCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEech
Confidence            4789999999999999998889999999999999999874321                000    02489999999999


Q ss_pred             CceEECCCCCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH
Q 048013           61 DLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK  138 (216)
Q Consensus        61 ~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~  138 (216)
                      ..++++|+++++++++.+. .+.++|+++ +..+++++++|||+|+|++|++++|+|+.+|+.+|++++.++++.+.+++
T Consensus       157 ~~~~~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~  236 (378)
T PLN02827        157 GCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT  236 (378)
T ss_pred             hheEECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            9999999999998888654 566788766 55778999999999999999999999999999768888889999999999


Q ss_pred             cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcC-CEEEEeccCCCCCcc
Q 048013          139 LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHREMTV  207 (216)
Q Consensus       139 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~  207 (216)
                      +|++.++++.+.++++.+.+++++   +.++|++||++|....+..+++.++++ |+++.+|....+..+
T Consensus       237 lGa~~~i~~~~~~~~~~~~v~~~~---~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~~~~  303 (378)
T PLN02827        237 FGVTDFINPNDLSEPIQQVIKRMT---GGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKPEV  303 (378)
T ss_pred             cCCcEEEcccccchHHHHHHHHHh---CCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCCccc
Confidence            999888775432235555565553   338999999999867788999999998 999999986543333

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=2.2e-31  Score=220.50  Aligned_cols=209  Identities=29%  Similarity=0.454  Sum_probs=171.4

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCC--------CCC----CCCCccceeEEecCCceEECCC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGL--------GSP----PVHGCLANQVVHPADLCFKLPD   68 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~--------~~~----~~~g~~~~~~~~~~~~~~~ip~   68 (216)
                      ++|++|++|++||||++.+..+|++|..|..+++++|......        |..    ...|+|+||+.+|++.++++|+
T Consensus        68 ~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ip~  147 (358)
T TIGR03451        68 AVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDP  147 (358)
T ss_pred             EeCCCCcccCCCCEEEEccCCCCCCChHHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheEECCC
Confidence            4789999999999999999999999999999999999753210        110    1359999999999999999999


Q ss_pred             CCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEe
Q 048013           69 NVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVK  146 (216)
Q Consensus        69 ~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~  146 (216)
                      ++++++++.+. .+.++|+++ +...++++++|||+|+|++|++++|+|+.+|+++|+++++++++++.++++|++.+++
T Consensus       148 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~  227 (358)
T TIGR03451       148 AADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVN  227 (358)
T ss_pred             CCChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEc
Confidence            99999888665 566788776 5677899999999999999999999999999966899999999999999999988877


Q ss_pred             CCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCC--Ccccchhhh
Q 048013          147 VSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHRE--MTVPLTPAA  213 (216)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--~~~~~~~~~  213 (216)
                      +.  ..++.+.+.++  +.+.++|++||++|++..+..++++++++|+++.+|.....  .++++..++
T Consensus       228 ~~--~~~~~~~i~~~--~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~  292 (358)
T TIGR03451       228 SS--GTDPVEAIRAL--TGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTPDMTLELPLLDVF  292 (358)
T ss_pred             CC--CcCHHHHHHHH--hCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCceeeccHHHHh
Confidence            53  34565556554  24568999999999877889999999999999999976543  344443333

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=4.3e-31  Score=218.09  Aligned_cols=208  Identities=25%  Similarity=0.453  Sum_probs=172.9

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCC------CCCchh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPD------NVSLEE   74 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~------~~~~~~   74 (216)
                      ++|++++.+ +||||++.+..+|++|..|+.+++++|......|. ..+|+|+||+.+|++.++++|+      ++++++
T Consensus        67 ~vG~~v~~~-~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~-~~~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~  144 (349)
T TIGR03201        67 QAGAGAASW-IGKAVIVPAVIPCGECELCKTGRGTICRAQKMPGN-DMQGGFASHIVVPAKGLCVVDEARLAAAGLPLEH  144 (349)
T ss_pred             EeCCCcCCC-CCCEEEECCCCCCCCChhhhCcCcccCCCCCccCc-CCCCcccceEEechHHeEECCcccccccCCCHHH
Confidence            468888877 99999999999999999999999999988766654 3469999999999999999998      788888


Q ss_pred             hhcc-hhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCc-c
Q 048013           75 GAMC-EPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNL-Q  152 (216)
Q Consensus        75 aa~~-~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~-~  152 (216)
                      ++.+ .++.++|++++...++++++|+|+|+|++|++++++|+.+|++ |++++++++++++++++|++.++++...+ +
T Consensus       145 ~a~~~~~~~ta~~a~~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~-vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~  223 (349)
T TIGR03201       145 VSVVADAVTTPYQAAVQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAA-VVAIDIDPEKLEMMKGFGADLTLNPKDKSAR  223 (349)
T ss_pred             hhhhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEEcCCHHHHHHHHHhCCceEecCccccHH
Confidence            7755 4788999999778889999999999999999999999999995 89999999999999999998877643321 2


Q ss_pred             cHHHHHHHHHHHcCCCcc----EEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhh
Q 048013          153 DIAEEVEKIQKAMGTGID----VSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAA  213 (216)
Q Consensus       153 ~~~~~~~~~~~~~~~~~d----~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  213 (216)
                      ++.+.++++  +.++++|    ++||++|+....+.++++++++|+++.+|......++++..++
T Consensus       224 ~~~~~~~~~--t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~  286 (349)
T TIGR03201       224 EVKKLIKAF--AKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMAKTEYRLSNLM  286 (349)
T ss_pred             HHHHHHHhh--cccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCCCcccCHHHHh
Confidence            344444444  3456776    8999999977788899999999999999986654556555544

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=6e-31  Score=218.69  Aligned_cols=199  Identities=28%  Similarity=0.499  Sum_probs=167.5

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCC---CC-----------------CCCCCccceeEEecC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGL---GS-----------------PPVHGCLANQVVHPA   60 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~---~~-----------------~~~~g~~~~~~~~~~   60 (216)
                      ++|+++++|++||||+..+..+|++|++|+.++++.|.+....   |.                 ....|+|+||+.+++
T Consensus        70 ~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~  149 (368)
T cd08300          70 SVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAE  149 (368)
T ss_pred             EeCCCCccCCCCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEEch
Confidence            4688999999999999988999999999999999999864311   10                 012479999999999


Q ss_pred             CceEECCCCCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH
Q 048013           61 DLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK  138 (216)
Q Consensus        61 ~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~  138 (216)
                      ..++++|+++++++++.+. ++.++|+++ +...++++++|||+|+|++|++++|+|+.+|+.+|+++++++++++.+++
T Consensus       150 ~~~~~iP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~  229 (368)
T cd08300         150 ISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK  229 (368)
T ss_pred             hceEeCCCCCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            9999999999999988665 778999987 66789999999999999999999999999999668999999999999999


Q ss_pred             cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcC-CEEEEeccCC
Q 048013          139 LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGH  202 (216)
Q Consensus       139 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~  202 (216)
                      +|++.++++.+.++++.+.+.+++   +.++|++||++|+...+..++++++++ |+++.+|+..
T Consensus       230 lGa~~~i~~~~~~~~~~~~v~~~~---~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~  291 (368)
T cd08300         230 FGATDCVNPKDHDKPIQQVLVEMT---DGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAA  291 (368)
T ss_pred             cCCCEEEcccccchHHHHHHHHHh---CCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCC
Confidence            999988875432234666666553   348999999999877889999999886 9999999764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=99.98  E-value=1.3e-30  Score=216.78  Aligned_cols=200  Identities=28%  Similarity=0.456  Sum_probs=166.8

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCC---CC-----------C-------CCCCccceeEEec
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGL---GS-----------P-------PVHGCLANQVVHP   59 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~---~~-----------~-------~~~g~~~~~~~~~   59 (216)
                      ++|++|+.|++||||++.+..+|++|..|..+++++|.+....   +.           .       ...|+|+||+.+|
T Consensus        70 ~vG~~v~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~  149 (369)
T cd08301          70 SVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVH  149 (369)
T ss_pred             EeCCCCCccccCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEe
Confidence            4788999999999999999999999999999999999875321   10           0       0248899999999


Q ss_pred             CCceEECCCCCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH
Q 048013           60 ADLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK  137 (216)
Q Consensus        60 ~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~  137 (216)
                      +..++++|+++++++++.+. ++.++|+++ +..+++++++|+|+|+|++|++++|+|+.+|+.+|+++++++++.+.++
T Consensus       150 ~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~  229 (369)
T cd08301         150 VGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAK  229 (369)
T ss_pred             cccEEECCCCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence            99999999999999988664 677888876 5678999999999999999999999999999855899999999999999


Q ss_pred             HcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcC-CEEEEeccCCC
Q 048013          138 KLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHR  203 (216)
Q Consensus       138 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~  203 (216)
                      ++|++.++++....+++.+.++++.   +.++|++||++|....+..++++++++ |+++++|+...
T Consensus       230 ~~Ga~~~i~~~~~~~~~~~~v~~~~---~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~  293 (369)
T cd08301         230 KFGVTEFVNPKDHDKPVQEVIAEMT---GGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHK  293 (369)
T ss_pred             HcCCceEEcccccchhHHHHHHHHh---CCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCC
Confidence            9999887765432234545555542   348999999999877788899999996 99999997654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=99.98  E-value=1.9e-30  Score=214.36  Aligned_cols=209  Identities=41%  Similarity=0.664  Sum_probs=177.5

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEP   80 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~   80 (216)
                      ++|++|+.|++||+|+..+...|++|.+|+.+.+++|.+....+....+|+|++|+.++...++++|+++++++++.+.+
T Consensus        78 ~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~  157 (351)
T cd08233          78 EVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALVEP  157 (351)
T ss_pred             EeCCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEECcCCCCHHHhhhccH
Confidence            36888999999999999988999999999999999998766555422369999999999999999999999999887778


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  160 (216)
                      +.++|++++..+++++++++|+|+|++|++++|+|+.+|+++|+++++++++.+.++++|++.++++.  ..++.+.+++
T Consensus       158 ~~ta~~~l~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~--~~~~~~~l~~  235 (351)
T cd08233         158 LAVAWHAVRRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPT--EVDVVAEVRK  235 (351)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCC--ccCHHHHHHH
Confidence            88999999778899999999999999999999999999996688899999999999999998887753  3456666655


Q ss_pred             HHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhh
Q 048013          161 IQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAA  213 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  213 (216)
                      +.  .++++|++||++|....++.++++|+++|+++.+|......++++..++
T Consensus       236 ~~--~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  286 (351)
T cd08233         236 LT--GGGGVDVSFDCAGVQATLDTAIDALRPRGTAVNVAIWEKPISFNPNDLV  286 (351)
T ss_pred             Hh--CCCCCCEEEECCCCHHHHHHHHHhccCCCEEEEEccCCCCCccCHHHHH
Confidence            42  4567999999999767889999999999999999976555555554444

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=99.98  E-value=1.6e-30  Score=217.46  Aligned_cols=197  Identities=27%  Similarity=0.541  Sum_probs=160.4

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCC------CCCCC---CCCCccceeEEecCC--ceEECCCC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESK------GLGSP---PVHGCLANQVVHPAD--LCFKLPDN   69 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~------~~~~~---~~~g~~~~~~~~~~~--~~~~ip~~   69 (216)
                      ++|++|+.|++||||++.+..+|++|++|+.|++++|.+..      .++..   ..+|+|+||+.+|+.  .++++|++
T Consensus        75 ~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~vP~~  154 (393)
T TIGR02819        75 EKGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKFPDR  154 (393)
T ss_pred             EEcCccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceEECCCc
Confidence            47899999999999999999999999999999999999743      12221   246999999999964  69999987


Q ss_pred             CCc----hh-hhcchhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEE
Q 048013           70 VSL----EE-GAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNI  144 (216)
Q Consensus        70 ~~~----~~-aa~~~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~  144 (216)
                      ++.    .. +++..++.++|++++..+++++++|+|.|+|++|++++|+|+.+|++.+++++++++++++++++|++. 
T Consensus       155 ~~~~~~~~~~a~l~~~~~ta~~a~~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~-  233 (393)
T TIGR02819       155 DQALEKIRDLTMLSDIFPTGYHGAVTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCET-  233 (393)
T ss_pred             ccccccccceeeeccHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeE-
Confidence            653    22 334557889999998788999999999889999999999999999986666788888999999999974 


Q ss_pred             EeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCH--------------HHHHHHHHHhhcCCEEEEeccC
Q 048013          145 VKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFN--------------KTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~--------------~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      ++.. ...++.+.+.++  +.+.++|++||++|.+              ..++.++++++++|+++.+|+.
T Consensus       234 v~~~-~~~~~~~~v~~~--~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~  301 (393)
T TIGR02819       234 VDLS-KDATLPEQIEQI--LGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY  301 (393)
T ss_pred             EecC-CcccHHHHHHHH--cCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence            3322 223455555554  2456899999999985              3789999999999999999985

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=99.97  E-value=2.2e-30  Score=214.63  Aligned_cols=203  Identities=23%  Similarity=0.414  Sum_probs=162.1

Q ss_pred             CCCCCCCCCCCCCEEEEcCC-cCCCCCcchhCCCCCCCCCCCCC-------CCCCCCCccceeEEecCCceEECCCCCCc
Q 048013            1 KVGSEVKTLVPGDRVALEPG-ISCWQCDYCKGGRYNLCPESKGL-------GSPPVHGCLANQVVHPADLCFKLPDNVSL   72 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~-~~~~~c~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~~~~~~~~ip~~~~~   72 (216)
                      ++|++|+.|++||||++.+. ..|++|++|+.|++++|++..+.       |. ..+|+|+||+.+|++.++++|+++++
T Consensus        80 ~vG~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~-~~~G~~aey~~v~~~~~~~lP~~ls~  158 (360)
T PLN02586         80 KLGKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGT-KNYGGYSDMIVVDQHFVLRFPDNLPL  158 (360)
T ss_pred             EECCCCCccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCC-cCCCccceEEEEchHHeeeCCCCCCH
Confidence            47899999999999986544 58999999999999999976532       22 23699999999999999999999999


Q ss_pred             hhhhcch-hhHHHHHHHHH-cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHH-HHHHHHcCCCEEEeCCC
Q 048013           73 EEGAMCE-PLSVGVHACRR-ANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYR-LSVAKKLGADNIVKVST  149 (216)
Q Consensus        73 ~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~-~~~~~~~g~~~~~~~~~  149 (216)
                      ++++.+. .+.++|+++.. ..++++++|+|.|+|++|++++|+|+.+|++ +++++.++++ .+.++++|++.+++...
T Consensus       159 ~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~-vi~~~~~~~~~~~~~~~~Ga~~vi~~~~  237 (360)
T PLN02586        159 DAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISSSSNKEDEAINRLGADSFLVSTD  237 (360)
T ss_pred             HHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCcchhhhHHHhCCCcEEEcCCC
Confidence            9988655 56688988854 4567999999999999999999999999996 7777666555 45667899988776432


Q ss_pred             CcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhh
Q 048013          150 NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA  214 (216)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  214 (216)
                        .   +.+.+.   .+ ++|++||++|....+..++++++++|+++.+|......++++..++.
T Consensus       238 --~---~~~~~~---~~-~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~  293 (360)
T PLN02586        238 --P---EKMKAA---IG-TMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLPEKPLELPIFPLVL  293 (360)
T ss_pred             --H---HHHHhh---cC-CCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCCCCCCccCHHHHHh
Confidence              1   223333   23 69999999998677889999999999999999765555666665543

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=99.97  E-value=4.7e-30  Score=213.13  Aligned_cols=206  Identities=28%  Similarity=0.503  Sum_probs=169.4

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCC-------------------CCCCccceeEEecCC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP-------------------PVHGCLANQVVHPAD   61 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~-------------------~~~g~~~~~~~~~~~   61 (216)
                      ++|++|+.+++||+|+..+...|++|.+|..|++++|++....+..                   ...|+|+||+.++++
T Consensus        69 ~vG~~v~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~  148 (365)
T cd08277          69 SVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDEN  148 (365)
T ss_pred             eeCCCCccCCCCCEEEECCCCCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEEchh
Confidence            4788999999999999988899999999999999999875432110                   124899999999999


Q ss_pred             ceEECCCCCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc
Q 048013           62 LCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL  139 (216)
Q Consensus        62 ~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~  139 (216)
                      .++++|+++++++++.+. ++.++|+++ +...++++++++|+|+|++|++++++|+.+|+.+|+++++++++++.++++
T Consensus       149 ~~~~lP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~  228 (365)
T cd08277         149 YVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF  228 (365)
T ss_pred             heEECCCCCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc
Confidence            999999999999998665 778999987 667899999999999999999999999999996689999999999999999


Q ss_pred             CCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcC-CEEEEeccCCC-CCcccc
Q 048013          140 GADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHR-EMTVPL  209 (216)
Q Consensus       140 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~  209 (216)
                      |++.+++....+.++.+.++++.   ++++|++||++|....+..++++++++ |+++.+|.... ..+++.
T Consensus       229 ga~~~i~~~~~~~~~~~~~~~~~---~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~  297 (365)
T cd08277         229 GATDFINPKDSDKPVSEVIREMT---GGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAELSIRP  297 (365)
T ss_pred             CCCcEeccccccchHHHHHHHHh---CCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCccccccCH
Confidence            99887764332233445555542   358999999999867788999999885 99999997543 234444

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.97  E-value=8e-30  Score=211.63  Aligned_cols=202  Identities=86%  Similarity=1.368  Sum_probs=172.3

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchhh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL   81 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~   81 (216)
                      +|++++.|++||+|+..+..+|++|..|..|..++|+....++....+|+|++|+.+++..++++|++++++++++..++
T Consensus        88 vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~~~~  167 (364)
T PLN02702         88 VGSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMCEPL  167 (364)
T ss_pred             ECCCCCCCCCCCEEEEcCCCCCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEECCCCCCHHHHhhhhHH
Confidence            68888889999999999999999999999999999987655554345799999999999999999999999998865677


Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHH
Q 048013           82 SVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKI  161 (216)
Q Consensus        82 ~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  161 (216)
                      ++++++++..++.++++++|+|+|++|++++++++.+|+..++++++++++.+.++++|++.+++++....++.+.+.++
T Consensus       168 ~~a~~~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  247 (364)
T PLN02702        168 SVGVHACRRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEI  247 (364)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHH
Confidence            77888887778899999999999999999999999999977888888999999999999998877644445566666555


Q ss_pred             HHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          162 QKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      .+..++++|++||++|....+..++++++++|+++.+|....
T Consensus       248 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  289 (364)
T PLN02702        248 QKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHN  289 (364)
T ss_pred             hhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCC
Confidence            433456899999999976788999999999999999996433

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=99.97  E-value=9.7e-30  Score=211.68  Aligned_cols=203  Identities=21%  Similarity=0.397  Sum_probs=162.7

Q ss_pred             CCCCCCCCCCCCCEEEEcCCc-CCCCCcchhCCCCCCCCCCCCC-------CCCCCCCccceeEEecCCceEECCCCCCc
Q 048013            1 KVGSEVKTLVPGDRVALEPGI-SCWQCDYCKGGRYNLCPESKGL-------GSPPVHGCLANQVVHPADLCFKLPDNVSL   72 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~-~~~~c~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~~~~~~~~ip~~~~~   72 (216)
                      ++|++|+.|++||||++.+.. .|++|++|+.|++++|++....       |. ..+|+|+||+.+|++.++++|+++++
T Consensus        74 ~vG~~v~~~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~-~~~G~~aey~~v~~~~~~~lP~~ls~  152 (375)
T PLN02178         74 KVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGT-RNQGGYSDVIVVDHRFVLSIPDGLPS  152 (375)
T ss_pred             EECCCCCccCCCCEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCC-cCCCccccEEEEchHHeEECCCCCCH
Confidence            478999999999999876654 6999999999999999976432       22 23699999999999999999999999


Q ss_pred             hhhhcch-hhHHHHHHHHHcC--CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHH-HHHHHHcCCCEEEeCC
Q 048013           73 EEGAMCE-PLSVGVHACRRAN--IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYR-LSVAKKLGADNIVKVS  148 (216)
Q Consensus        73 ~~aa~~~-~~~~a~~~l~~~~--~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~-~~~~~~~g~~~~~~~~  148 (216)
                      ++++.+. ...++|+++....  .+++++++|.|+|++|++++|+|+.+|++ |++++.++++ .+.++++|++.++++.
T Consensus       153 ~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~-Vi~~~~~~~~~~~~a~~lGa~~~i~~~  231 (375)
T PLN02178        153 DSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLR-VTVISRSSEKEREAIDRLGADSFLVTT  231 (375)
T ss_pred             HHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCCe-EEEEeCChHHhHHHHHhCCCcEEEcCc
Confidence            9988655 5667898886543  36899999999999999999999999995 7777766544 6778899998877643


Q ss_pred             CCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhh
Q 048013          149 TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA  214 (216)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  214 (216)
                      +  .   +.+.+.   .+ ++|++||++|.+..+..++++++++|+++.+|+...+.++++..+++
T Consensus       232 ~--~---~~v~~~---~~-~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~  288 (375)
T PLN02178        232 D--S---QKMKEA---VG-TMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPLDLPIFPLVL  288 (375)
T ss_pred             C--H---HHHHHh---hC-CCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCCCCccCHHHHHh
Confidence            2  1   233333   23 69999999998667889999999999999999765555666665543

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=99.97  E-value=5e-30  Score=208.94  Aligned_cols=182  Identities=34%  Similarity=0.468  Sum_probs=152.9

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-   79 (216)
                      ++|++|+.|++||||+... ..|                        .+|+|+||+.+|++.++++|+++++++|+.++ 
T Consensus        71 avG~~V~~~~~GdrV~~~~-~~~------------------------~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~  125 (326)
T COG0604          71 AVGSGVTGFKVGDRVAALG-GVG------------------------RDGGYAEYVVVPADWLVPLPDGLSFEEAAALPL  125 (326)
T ss_pred             EeCCCCCCcCCCCEEEEcc-CCC------------------------CCCcceeEEEecHHHceeCCCCCCHHHHHHHHH
Confidence            4799999999999999863 110                        45999999999999999999999999999776 


Q ss_pred             hhHHHHHHHH-HcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           80 PLSVGVHACR-RANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        80 ~~~~a~~~l~-~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                      .+.|||+++. ..+++++++|||+|+ |++|++++|+|+++|+. ++++.+++++.++++++|++.+++|.+  +++.+.
T Consensus       126 ~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~-~v~~~~s~~k~~~~~~lGAd~vi~y~~--~~~~~~  202 (326)
T COG0604         126 AGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGAT-VVAVVSSSEKLELLKELGADHVINYRE--EDFVEQ  202 (326)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCc-EEEEecCHHHHHHHHhcCCCEEEcCCc--ccHHHH
Confidence            7779999995 477999999999985 99999999999999984 666667777777999999999998643  568888


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC--CCcccchhhh
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR--EMTVPLTPAA  213 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~  213 (216)
                      +++++  .++++|+|+|++|+ +.+...+..|+++|+++.+|...+  ..++++.+++
T Consensus       203 v~~~t--~g~gvDvv~D~vG~-~~~~~~l~~l~~~G~lv~ig~~~g~~~~~~~~~~~~  257 (326)
T COG0604         203 VRELT--GGKGVDVVLDTVGG-DTFAASLAALAPGGRLVSIGALSGGPPVPLNLLPLL  257 (326)
T ss_pred             HHHHc--CCCCceEEEECCCH-HHHHHHHHHhccCCEEEEEecCCCCCccccCHHHHh
Confidence            88773  67789999999999 777889999999999999997662  3455555444

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=99.97  E-value=9.6e-30  Score=208.45  Aligned_cols=197  Identities=24%  Similarity=0.304  Sum_probs=166.1

Q ss_pred             CCCCCCCCCCCCCEEEEcCC-cCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-
Q 048013            1 KVGSEVKTLVPGDRVALEPG-ISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-   78 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~-~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-   78 (216)
                      ++|++|+.|++||||++.+. ..|+.|++|+.+++++|.+...+|. ..+|+|+||+.+|+..++++|+++++++++.+ 
T Consensus        70 ~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~-~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~  148 (329)
T TIGR02822        70 GRGADAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGW-DTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLL  148 (329)
T ss_pred             EECCCCcccCCCCEEEEcCccCcCCCChHHhCcCcccCCCcccCCc-ccCCcceeEEEeccccEEECCCCCCHHHhHHHh
Confidence            46889999999999988654 4799999999999999998776665 35799999999999999999999999888854 


Q ss_pred             hhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           79 EPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        79 ~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      .++.++|++++..+++++++++|+|+|++|++++|+|+.+|++ |++++++++++++++++|++.+++..+.        
T Consensus       149 ~~~~ta~~~~~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~-vi~~~~~~~~~~~a~~~Ga~~vi~~~~~--------  219 (329)
T TIGR02822       149 CAGIIGYRALLRASLPPGGRLGLYGFGGSAHLTAQVALAQGAT-VHVMTRGAAARRLALALGAASAGGAYDT--------  219 (329)
T ss_pred             ccchHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCe-EEEEeCChHHHHHHHHhCCceecccccc--------
Confidence            4777899999778899999999999999999999999999995 8999999999999999999987763210        


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCC-Ccccchhhh
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHRE-MTVPLTPAA  213 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~  213 (216)
                            ...++|+++++.+....+..++++++++|+++.+|+.... .++++..++
T Consensus       220 ------~~~~~d~~i~~~~~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~  269 (329)
T TIGR02822       220 ------PPEPLDAAILFAPAGGLVPPALEALDRGGVLAVAGIHLTDTPPLNYQRHL  269 (329)
T ss_pred             ------CcccceEEEECCCcHHHHHHHHHhhCCCcEEEEEeccCccCCCCCHHHHh
Confidence                  1236899999888777889999999999999999975332 345554443

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=99.97  E-value=1.6e-29  Score=209.23  Aligned_cols=191  Identities=28%  Similarity=0.429  Sum_probs=154.7

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCC--CCCCCCCccceeEEecCCceEECCCCCCchhhhcc
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGL--GSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC   78 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~   78 (216)
                      ++|++ +.|++||||+..+...|++|.+|+.|++++|......  |....+|+|+||+.+|++.++++|++++ +.+++.
T Consensus        71 ~vG~~-~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~~P~~~~-~~a~~~  148 (355)
T cd08230          71 EVGDG-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVKVPPSLA-DVGVLL  148 (355)
T ss_pred             EecCC-CCCCCCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEECCCCCC-cceeec
Confidence            46888 8899999999988889999999999999999875543  3223469999999999999999999998 666666


Q ss_pred             hhhHHHHHHHHH-------cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC---ChHHHHHHHHcCCCEEEeCC
Q 048013           79 EPLSVGVHACRR-------ANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDV---DDYRLSVAKKLGADNIVKVS  148 (216)
Q Consensus        79 ~~~~~a~~~l~~-------~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~---~~~~~~~~~~~g~~~~~~~~  148 (216)
                      .+++++++++..       .+.+++++|+|+|+|++|++++|+|+.+|++ |+++++   ++++++.++++|++.+ ++.
T Consensus       149 ~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~~-vi~~~~~~~~~~~~~~~~~~Ga~~v-~~~  226 (355)
T cd08230         149 EPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGFE-VYVLNRRDPPDPKADIVEELGATYV-NSS  226 (355)
T ss_pred             chHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEEecCCCCHHHHHHHHHcCCEEe-cCC
Confidence            677776655422       2357899999999999999999999999995 888887   6788999999999863 432


Q ss_pred             CCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          149 TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                        ++++.+ . +    ...++|++||++|....+..+++.++++|+++++|+...
T Consensus       227 --~~~~~~-~-~----~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~  273 (355)
T cd08230         227 --KTPVAE-V-K----LVGEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGG  273 (355)
T ss_pred             --ccchhh-h-h----hcCCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCC
Confidence              233322 1 1    235799999999987778999999999999999997665

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=99.97  E-value=2e-28  Score=202.97  Aligned_cols=200  Identities=31%  Similarity=0.503  Sum_probs=165.6

Q ss_pred             CCCCCCCC------CCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCC------CCCCccceeEEecCC-ceEECC
Q 048013            1 KVGSEVKT------LVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP------PVHGCLANQVVHPAD-LCFKLP   67 (216)
Q Consensus         1 ~vG~~v~~------~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~-~~~~ip   67 (216)
                      ++|++|+.      |++||+|+..+..+|++|..|+.++++.|.+...++..      ...|+|+||+.++++ .++++|
T Consensus        68 ~vG~~v~~~~~~~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~lP  147 (361)
T cd08231          68 ALGGGVTTDVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVRVP  147 (361)
T ss_pred             EeCCCccccccCCccCCCCEEEEcccCCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecCCCceEECC
Confidence            36788875      99999999999999999999999999999987666542      236999999999996 799999


Q ss_pred             CCCCchhhhcc-hhhHHHHHHHHHcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEE
Q 048013           68 DNVSLEEGAMC-EPLSVGVHACRRAN-IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIV  145 (216)
Q Consensus        68 ~~~~~~~aa~~-~~~~~a~~~l~~~~-~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~  145 (216)
                      +++++++++.+ .++.++|++++... .++++++||+|+|++|++++++|+.+|++.|+++++++++.+.++++|++.++
T Consensus       148 ~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi  227 (361)
T cd08231         148 DNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATI  227 (361)
T ss_pred             CCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEE
Confidence            99988888876 58889999996544 45899999999999999999999999995588899999999999999998877


Q ss_pred             eCCCCc-ccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          146 KVSTNL-QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       146 ~~~~~~-~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +++... .++.+.+.++  +.++++|++||++|+...+...+++++++|+++.+|...
T Consensus       228 ~~~~~~~~~~~~~i~~~--~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~  283 (361)
T cd08231         228 DIDELPDPQRRAIVRDI--TGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVA  283 (361)
T ss_pred             cCcccccHHHHHHHHHH--hCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEEcCCC
Confidence            654321 1122334444  346789999999998677889999999999999999654

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.97  E-value=1.8e-28  Score=201.89  Aligned_cols=205  Identities=56%  Similarity=0.989  Sum_probs=171.0

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEP   80 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~   80 (216)
                      ++|++++.+++||+|+..+..+|++|++|+.|+.++|....+.+.....|+|++|+.++++.++++|+++++.+++.+++
T Consensus        68 ~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~~~  147 (343)
T cd05285          68 AVGSGVTHLKVGDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALVEP  147 (343)
T ss_pred             eeCCCCCCCCCCCEEEEccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEECcCCCCHHHhhhhhH
Confidence            36888889999999999999999999999999999998765433323569999999999999999999999999887678


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccH---HHH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI---AEE  157 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~  157 (216)
                      +.+++++++..+++++++++|+|+|++|++++++|+.+|+++|+++++++++.+.++++|.+.+++++.  .++   .+.
T Consensus       148 ~~~a~~~~~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~--~~~~~~~~~  225 (343)
T cd05285         148 LSVGVHACRRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRT--EDTPESAEK  225 (343)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEecccc--ccchhHHHH
Confidence            888998887888999999999988999999999999999965888888888988889999988876532  232   444


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccc
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPL  209 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~  209 (216)
                      +.+.  +.++++|++||++|....++..+++++++|+++.+|.......+++
T Consensus       226 ~~~~--~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~  275 (343)
T cd05285         226 IAEL--LGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLVGMGKPEVTLPL  275 (343)
T ss_pred             HHHH--hCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCH
Confidence            5544  3466799999999985578899999999999999996554334443

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK10083 putative oxidoreductase; Provisional

Probab=99.97  E-value=1.3e-28  Score=202.27  Aligned_cols=195  Identities=27%  Similarity=0.491  Sum_probs=165.6

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchhh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL   81 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~   81 (216)
                      +|++|+.+++||+|++.+..+|+.|.+|..+++++|.+...++. ..+|+|+||+.++...++++|++++++.+++..++
T Consensus        68 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~~~~~~  146 (339)
T PRK10083         68 VGEGVDAARIGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGV-HRDGGFSEYAVVPAKNAHRIPDAIADQYAVMVEPF  146 (339)
T ss_pred             ECCCCccCCCCCEEEEccccCCCCCccccCcCcccCCCCceEEE-ccCCcceeeEEechHHeEECcCCCCHHHHhhhchH
Confidence            68889999999999999999999999999999999987665444 24699999999999999999999999888766688


Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHH
Q 048013           82 SVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARA-FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        82 ~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~-~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  160 (216)
                      .+++++++..+++++++|+|+|+|++|++++++|+. +|++.++++++++++.+.++++|++.+++++.  .++.+.+..
T Consensus       147 ~~a~~~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~--~~~~~~~~~  224 (339)
T PRK10083        147 TIAANVTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQ--EPLGEALEE  224 (339)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc--ccHHHHHhc
Confidence            888877777889999999999999999999999996 69977888999999999999999988876532  344333321


Q ss_pred             HHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          161 IQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                          .+.++|++||++|.+..+...+++++++|+++.+|....
T Consensus       225 ----~g~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  263 (339)
T PRK10083        225 ----KGIKPTLIIDAACHPSILEEAVTLASPAARIVLMGFSSE  263 (339)
T ss_pred             ----CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCC
Confidence                244567999999976778999999999999999996543

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=99.97  E-value=3.4e-28  Score=202.51  Aligned_cols=200  Identities=27%  Similarity=0.399  Sum_probs=163.8

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCC-------------------C-CCCCccceeEEecC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGS-------------------P-PVHGCLANQVVHPA   60 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-------------------~-~~~g~~~~~~~~~~   60 (216)
                      ++|++++.+++||+|++.+..+|++|.+|+.++++.|+.....+.                   . ...|+|+||+.+++
T Consensus        74 ~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~  153 (373)
T cd08299          74 SVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDE  153 (373)
T ss_pred             EeCCCCccCCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEecc
Confidence            368888899999999998889999999999999999986533210                   0 02589999999999


Q ss_pred             CceEECCCCCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH
Q 048013           61 DLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK  138 (216)
Q Consensus        61 ~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~  138 (216)
                      +.++++|+++++++++.+. ++.++|+++ +...++++++++|+|+|++|++++++++.+|+++|+++++++++++.+++
T Consensus       154 ~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~  233 (373)
T cd08299         154 IAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKE  233 (373)
T ss_pred             cceeeCCCCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            9999999999999988665 778999886 66789999999999999999999999999999558999999999999999


Q ss_pred             cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHh-hcCCEEEEeccCCC
Q 048013          139 LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSAT-RAGGKVCLVGMGHR  203 (216)
Q Consensus       139 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~  203 (216)
                      +|++.+++..+..++..+.+.++.   ++++|+++|++|.+..+..++..+ +++|+++.+|....
T Consensus       234 lGa~~~i~~~~~~~~~~~~v~~~~---~~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~  296 (373)
T cd08299         234 LGATECINPQDYKKPIQEVLTEMT---DGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPS  296 (373)
T ss_pred             cCCceEecccccchhHHHHHHHHh---CCCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCC
Confidence            999887765332223445555543   357999999999766677766655 67999999997543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=6.6e-28  Score=201.52  Aligned_cols=205  Identities=28%  Similarity=0.484  Sum_probs=168.8

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCC-------CCch
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDN-------VSLE   73 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~-------~~~~   73 (216)
                      ++|++++.|++||+|++.+..+|+.|+.|..+++++|......|. ..+|+|++|+.++++.++++|++       ++++
T Consensus       101 ~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~-~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~  179 (384)
T cd08265         101 KTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGF-SADGAFAEYIAVNARYAWEINELREIYSEDKAFE  179 (384)
T ss_pred             EECCCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcceeee-cCCCcceeeEEechHHeEECCccccccccCCCHH
Confidence            368888899999999999999999999999999999998766555 24799999999999999999986       4566


Q ss_pred             hhhcchhhHHHHHHH-HH-cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCC-
Q 048013           74 EGAMCEPLSVGVHAC-RR-ANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTN-  150 (216)
Q Consensus        74 ~aa~~~~~~~a~~~l-~~-~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~-  150 (216)
                      .+++..+++++|+++ .. .+++++++|+|+|+|++|++++++|+.+|+.+|+++++++++.+.++++|++.++++... 
T Consensus       180 ~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~  259 (384)
T cd08265         180 AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMR  259 (384)
T ss_pred             HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcccccc
Confidence            566667888999998 44 678999999999889999999999999999668899888889999999999887765422 


Q ss_pred             cccHHHHHHHHHHHcCCCccEEEEcCCCH-HHHHHHHHHhhcCCEEEEeccCCCCCccc
Q 048013          151 LQDIAEEVEKIQKAMGTGIDVSFDCAGFN-KTMSTALSATRAGGKVCLVGMGHREMTVP  208 (216)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~  208 (216)
                      ..++.+.+.++.  .++++|+++|++|++ ..+...+++|+++|+++.+|......+++
T Consensus       260 ~~~~~~~v~~~~--~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~  316 (384)
T cd08265         260 DCLSGEKVMEVT--KGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAATTVPLH  316 (384)
T ss_pred             cccHHHHHHHhc--CCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEECCCCCCCccc
Confidence            125555565553  567899999999973 46788999999999999999654433333

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=99.96  E-value=1.4e-27  Score=198.28  Aligned_cols=199  Identities=30%  Similarity=0.497  Sum_probs=165.6

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCC--------------------CCCCccceeEEecC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------------PVHGCLANQVVHPA   60 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~--------------------~~~g~~~~~~~~~~   60 (216)
                      ++|++++.+++||+|+..+...|++|.+|..+++++|.....++..                    ...|+|++|+.+++
T Consensus        67 ~vG~~v~~~~~Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~  146 (365)
T cd05279          67 SIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSE  146 (365)
T ss_pred             EeCCCcccCCCCCEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEecC
Confidence            3688898999999999998899999999999999999765533210                    02479999999999


Q ss_pred             CceEECCCCCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH
Q 048013           61 DLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK  138 (216)
Q Consensus        61 ~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~  138 (216)
                      +.++++|+++++++++.+. ++.++|+++ +...++++++++|+|+|++|++++++|+.+|++.++++++++++.+.+++
T Consensus       147 ~~~~~lP~~~~~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~  226 (365)
T cd05279         147 ISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ  226 (365)
T ss_pred             CceEECCCCCCHHHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            9999999999999888665 788899887 56789999999999989999999999999999767888889999999999


Q ss_pred             cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhh-cCCEEEEeccCC
Q 048013          139 LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATR-AGGKVCLVGMGH  202 (216)
Q Consensus       139 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~-~~G~~v~~g~~~  202 (216)
                      +|++.+++....+.++.+.++++   .++++|++||++|....+..++++++ ++|+++.+|...
T Consensus       227 ~g~~~~v~~~~~~~~~~~~l~~~---~~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  288 (365)
T cd05279         227 LGATECINPRDQDKPIVEVLTEM---TDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPP  288 (365)
T ss_pred             hCCCeecccccccchHHHHHHHH---hCCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCC
Confidence            99988776433211444555554   24689999999987677889999999 999999998653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.96  E-value=1.6e-27  Score=196.87  Aligned_cols=198  Identities=30%  Similarity=0.435  Sum_probs=167.3

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCC---CCCCCCCCccceeEEecCC--ceEECCCCCCchhh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKG---LGSPPVHGCLANQVVHPAD--LCFKLPDNVSLEEG   75 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~--~~~~ip~~~~~~~a   75 (216)
                      ++|++++.+++||+|+..+..+|++|..|..|+++.|.+...   ++ ...+|+|+||+.+|..  .++++|++++++++
T Consensus        67 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~-~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~a  145 (351)
T cd08285          67 EVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFS-NFKDGVFAEYFHVNDADANLAPLPDGLTDEQA  145 (351)
T ss_pred             EecCCcCccCCCCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCcccc-CCCCcceeEEEEcchhhCceEECCCCCCHHHh
Confidence            368888899999999998888999999999999999987531   11 1346999999999974  89999999999998


Q ss_pred             hcc-hhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccH
Q 048013           76 AMC-EPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI  154 (216)
Q Consensus        76 a~~-~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  154 (216)
                      +.+ .++.+++++++...+++++++||+|+|++|++++++|+.+|+..++++++++++.+.++++|++.+++++.  .++
T Consensus       146 a~~~~~~~ta~~~~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~--~~~  223 (351)
T cd08285         146 VMLPDMMSTGFHGAELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKN--GDV  223 (351)
T ss_pred             hhhccchhhHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCC--CCH
Confidence            866 47788999987788999999999998999999999999999976888999999999999999988877532  355


Q ss_pred             HHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          155 AEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       155 ~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      .+.+.++.  .++++|+++|++|+...+..++++++++|+++.+|....
T Consensus       224 ~~~i~~~~--~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  270 (351)
T cd08285         224 VEQILKLT--GGKGVDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGE  270 (351)
T ss_pred             HHHHHHHh--CCCCCcEEEECCCCHHHHHHHHHHhhcCCEEEEecccCC
Confidence            55555542  456899999999987788999999999999999997554

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=99.96  E-value=3.2e-28  Score=200.44  Aligned_cols=189  Identities=24%  Similarity=0.352  Sum_probs=149.1

Q ss_pred             CCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchhhHHHHH
Q 048013            7 KTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVH   86 (216)
Q Consensus         7 ~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~   86 (216)
                      +.|++||||++.+...|+ |..|  +..++|.+..+.+. ..+|+|+||+.+|+++++++|+++++++|+++.+++++|+
T Consensus        76 ~~~~vGdrV~~~~~~~~~-~~~~--~~~~~c~~~~~~g~-~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~~~~~~~a~~  151 (341)
T cd08237          76 GTYKVGTKVVMVPNTPVE-KDEI--IPENYLPSSRFRSS-GYDGFMQDYVFLPPDRLVKLPDNVDPEVAAFTELVSVGVH  151 (341)
T ss_pred             CccCCCCEEEECCCCCch-hccc--chhccCCCcceeEe-cCCCceEEEEEEchHHeEECCCCCChHHhhhhchHHHHHH
Confidence            469999999998887777 4455  45678887665554 3469999999999999999999999999998889999999


Q ss_pred             HHHH---cCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHH
Q 048013           87 ACRR---ANIGPETNVLIMGSGPIGLVTMLAARA-FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        87 ~l~~---~~~~~~~~vlv~Gag~~G~~~i~~a~~-~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  162 (216)
                      +++.   ..++++++|+|+|+|++|++++|+++. +|..+|++++++++|++.+++++....+      .       ++.
T Consensus       152 a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~------~-------~~~  218 (341)
T cd08237         152 AISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLI------D-------DIP  218 (341)
T ss_pred             HHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeeh------h-------hhh
Confidence            9853   346889999999999999999999986 6654689999999999998875543211      0       111


Q ss_pred             HHcCCCccEEEEcCCC---HHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhh
Q 048013          163 KAMGTGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA  214 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  214 (216)
                        ...++|++||++|+   +..+..++++++++|+++++|+...+.++++..++.
T Consensus       219 --~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~  271 (341)
T cd08237         219 --EDLAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGVSEYPVPINTRMVLE  271 (341)
T ss_pred             --hccCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEeecCCCcccCHHHHhh
Confidence              12369999999994   456789999999999999999865555666555443

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.96  E-value=2.7e-28  Score=185.06  Aligned_cols=176  Identities=30%  Similarity=0.433  Sum_probs=154.2

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-h
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-E   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~   79 (216)
                      ++|++|+++++||||...                            +.+|.|+|++.+|...+.++|+.+++.+++.+ .
T Consensus        78 AvG~gvtdrkvGDrVayl----------------------------~~~g~yaee~~vP~~kv~~vpe~i~~k~aaa~ll  129 (336)
T KOG1197|consen   78 AVGEGVTDRKVGDRVAYL----------------------------NPFGAYAEEVTVPSVKVFKVPEAITLKEAAALLL  129 (336)
T ss_pred             EecCCccccccccEEEEe----------------------------ccchhhheeccccceeeccCCcccCHHHHHHHHH
Confidence            479999999999999875                            46799999999999999999999999998854 4


Q ss_pred             hhHHHHHHH-HHcCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           80 PLSVGVHAC-RRANIGPETNVLIMG-SGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        80 ~~~~a~~~l-~~~~~~~~~~vlv~G-ag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                      -..|||..+ +..++++|++|||+. +|++|+++.|+++..|++ +|.+..+.+|.+.+++.|+++.++++  .+|+.+.
T Consensus       130 q~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~-tI~~asTaeK~~~akenG~~h~I~y~--~eD~v~~  206 (336)
T KOG1197|consen  130 QGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAH-TIATASTAEKHEIAKENGAEHPIDYS--TEDYVDE  206 (336)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcE-EEEEeccHHHHHHHHhcCCcceeecc--chhHHHH
Confidence            777999888 557899999999997 599999999999999996 88888999999999999999988864  4788888


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCC-cccch
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREM-TVPLT  210 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~  210 (216)
                      +.++  ++|+|+|+++|.+|. +.+...+.+|++.|.++.+|+.+... ++++.
T Consensus       207 V~ki--TngKGVd~vyDsvG~-dt~~~sl~~Lk~~G~mVSfG~asgl~~p~~l~  257 (336)
T KOG1197|consen  207 VKKI--TNGKGVDAVYDSVGK-DTFAKSLAALKPMGKMVSFGNASGLIDPIPLN  257 (336)
T ss_pred             HHhc--cCCCCceeeeccccc-hhhHHHHHHhccCceEEEeccccCCCCCeehh
Confidence            8777  479999999999999 88899999999999999999876532 44443

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=3.7e-27  Score=194.65  Aligned_cols=203  Identities=30%  Similarity=0.581  Sum_probs=169.1

Q ss_pred             CCCCCC--CCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCC-CCCCccceeEEecCC-ceEECCCCCCchhhhc
Q 048013            2 VGSEVK--TLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP-PVHGCLANQVVHPAD-LCFKLPDNVSLEEGAM   77 (216)
Q Consensus         2 vG~~v~--~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~-~~~~ip~~~~~~~aa~   77 (216)
                      +|+.|+  .|++||+|+..+..+|++|..|+.+.++.|.....+|.. ...|+|++|+.++++ .++++|+++++++++.
T Consensus        77 vG~~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~lP~~~~~~~aa~  156 (350)
T cd08256          77 LGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKVPDDIPPEDAIL  156 (350)
T ss_pred             eCCCcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEECCCCCCHHHHhh
Confidence            688888  899999999999999999999999999999866544441 246999999999988 5789999999988886


Q ss_pred             chhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           78 CEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        78 ~~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                      +.++.++|++++..+++++++++|.|+|++|++++++|+.+|+.+++++++++++.+.++++|++.+++.+  ..++.+.
T Consensus       157 ~~~~~ta~~a~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~--~~~~~~~  234 (350)
T cd08256         157 IEPLACALHAVDRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPP--EVDVVEK  234 (350)
T ss_pred             hhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEEecCC--CcCHHHH
Confidence            67888999998778899999999977899999999999999987788889999999999999998776643  2355555


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCccc
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVP  208 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~  208 (216)
                      +.++  +.+.++|++||++|+...+...+++++++|+++.+|.......++
T Consensus       235 ~~~~--~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~  283 (350)
T cd08256         235 IKEL--TGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEFSVFGDPVTVD  283 (350)
T ss_pred             HHHH--hCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEccCCCCCccC
Confidence            5554  245689999999997567788999999999999998644433333

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.96  E-value=2.3e-27  Score=194.65  Aligned_cols=201  Identities=25%  Similarity=0.405  Sum_probs=168.1

Q ss_pred             CCCCCCCCCCCCEEEEcC-CcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-
Q 048013            2 VGSEVKTLVPGDRVALEP-GISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-   79 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~-~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-   79 (216)
                      +|++++.+++||+|++.+ ...|++|..|..|+++.|......+. ...|+|++|+.++...++++|+++++++++.+. 
T Consensus        69 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~~-~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~  147 (333)
T cd08296          69 VGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGV-TRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLC  147 (333)
T ss_pred             ECCCCccCCCCCEEEeccccCCCCCChhhhCcCcccCCCCCccCc-ccCCcceeEEEEchhheEeCCCCCCHHHhhhhhh
Confidence            688888899999998754 56899999999999999998876655 346999999999999999999999998888554 


Q ss_pred             hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHH
Q 048013           80 PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE  159 (216)
Q Consensus        80 ~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (216)
                      ++.++|++++...+.++++|+|+|+|++|++++++|+.+|++ ++++++++++++.++++|++.++++..  .++.+.+.
T Consensus       148 ~~~ta~~~~~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~-vi~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~  224 (333)
T cd08296         148 AGVTTFNALRNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGFR-TVAISRGSDKADLARKLGAHHYIDTSK--EDVAEALQ  224 (333)
T ss_pred             hhHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCe-EEEEeCChHHHHHHHHcCCcEEecCCC--ccHHHHHH
Confidence            677889998766889999999999999999999999999995 889999999999999999988776432  34444444


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchh
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTP  211 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~  211 (216)
                      ++     +++|+++|++|....+...+++++++|+++.+|......+++...
T Consensus       225 ~~-----~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~  271 (333)
T cd08296         225 EL-----GGAKLILATAPNAKAISALVGGLAPRGKLLILGAAGEPVAVSPLQ  271 (333)
T ss_pred             hc-----CCCCEEEECCCchHHHHHHHHHcccCCEEEEEecCCCCCCcCHHH
Confidence            32     369999999986678889999999999999999765545555443

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=99.96  E-value=1.8e-27  Score=197.08  Aligned_cols=203  Identities=21%  Similarity=0.312  Sum_probs=159.9

Q ss_pred             CCCCCCCCCCCCCEEEEcCCc-CCCCCcchhCCCCCCCCCCCCC-------CCCCCCCccceeEEecCCceEECCCCCCc
Q 048013            1 KVGSEVKTLVPGDRVALEPGI-SCWQCDYCKGGRYNLCPESKGL-------GSPPVHGCLANQVVHPADLCFKLPDNVSL   72 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~-~~~~c~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~~~~~~~~ip~~~~~   72 (216)
                      ++|++|+.|++||+|++.+.. +|++|..|+.+++++|.+....       |. ..+|+|+||+.+|...++++|+++++
T Consensus        77 ~vG~~v~~~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~~  155 (357)
T PLN02514         77 EVGSDVSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGK-PTQGGFASAMVVDQKFVVKIPEGMAP  155 (357)
T ss_pred             EECCCcccccCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCc-cCCCccccEEEEchHHeEECCCCCCH
Confidence            368889999999999876543 7999999999999999875321       11 24699999999999999999999999


Q ss_pred             hhhhcch-hhHHHHHHHHH-cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHH-HHHcCCCEEEeCCC
Q 048013           73 EEGAMCE-PLSVGVHACRR-ANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV-AKKLGADNIVKVST  149 (216)
Q Consensus        73 ~~aa~~~-~~~~a~~~l~~-~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~-~~~~g~~~~~~~~~  149 (216)
                      ++++.+. .+.++|+++.. ...+++++++|+|+|++|++++|+|+.+|++ +++++.++++++. ++++|++.+++..+
T Consensus       156 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~-vi~~~~~~~~~~~~~~~~Ga~~~i~~~~  234 (357)
T PLN02514        156 EQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHH-VTVISSSDKKREEALEHLGADDYLVSSD  234 (357)
T ss_pred             HHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHhcCCcEEecCCC
Confidence            9988654 66789999855 4457899999999999999999999999996 7777777766654 46799987655321


Q ss_pred             CcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhh
Q 048013          150 NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA  214 (216)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  214 (216)
                        .   +.+.+.   . .++|++||++|....+..++++++++|+++.+|......++++..++.
T Consensus       235 --~---~~~~~~---~-~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~  290 (357)
T PLN02514        235 --A---AEMQEA---A-DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFVTPMLML  290 (357)
T ss_pred             --h---HHHHHh---c-CCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCCCCcccHHHHhh
Confidence              1   223332   2 379999999997677889999999999999999765555565555543

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.96  E-value=2.5e-27  Score=198.64  Aligned_cols=198  Identities=24%  Similarity=0.269  Sum_probs=166.4

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-h
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-E   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~   79 (216)
                      ++|++++.+++||+|+..+...|++|+.|..+..++|.+...+|....+|+|++|+.++...++++|+++++++++.+ .
T Consensus        95 ~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~l~~~~aa~l~~  174 (393)
T cd08246          95 AVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEEAAAYML  174 (393)
T ss_pred             EeCCCCCcCCCCCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCCCCCHHHHhhhcc
Confidence            368889899999999999999999999999999999998777776556799999999999999999999999988744 5


Q ss_pred             hhHHHHHHHHH---cCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCc----
Q 048013           80 PLSVGVHACRR---ANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNL----  151 (216)
Q Consensus        80 ~~~~a~~~l~~---~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~----  151 (216)
                      ++.+||+++..   .+++++++++|+|+ |++|++++++|+.+|++ +++++.++++.+.++++|++.+++.+..+    
T Consensus       175 ~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~-vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~  253 (393)
T cd08246         175 VGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGAN-PVAVVSSEEKAEYCRALGAEGVINRRDFDHWGV  253 (393)
T ss_pred             cHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCCe-EEEEeCCHHHHHHHHHcCCCEEEcccccccccc
Confidence            88899999843   57889999999996 99999999999999996 77888899999999999998877653211    


Q ss_pred             ----------------ccHHHHHHHHHHHcCC-CccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          152 ----------------QDIAEEVEKIQKAMGT-GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       152 ----------------~~~~~~~~~~~~~~~~-~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                                      ..+.+.+.++  +.+. ++|++||++|+ ..+...+++++++|+++.+|...
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~v~~l--~~~~~g~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~  318 (393)
T cd08246         254 LPDVNSEAYTAWTKEARRFGKAIWDI--LGGREDPDIVFEHPGR-ATFPTSVFVCDRGGMVVICAGTT  318 (393)
T ss_pred             cccccchhhhhhhhccchHHHHHHHH--hCCCCCCeEEEECCch-HhHHHHHHHhccCCEEEEEcccC
Confidence                            0133344444  2455 79999999998 67888999999999999998643

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.96  E-value=4.3e-27  Score=193.36  Aligned_cols=194  Identities=30%  Similarity=0.543  Sum_probs=167.2

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-h
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-P   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~   80 (216)
                      +|++|+.+++||+|+..+..+|++|..|..|+.++|++....+. +.+|+|++|+.+++++++++|+++++++++.+. .
T Consensus        72 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~  150 (340)
T cd05284          72 VGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGI-GTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADA  150 (340)
T ss_pred             eCCCCCcCcCCCEEEEcCCCCCCCChHHhCcCcccCCCCcccCc-cCCCcceeeEEecHHHeEECCCCCCHHHhhhhcch
Confidence            68888899999999999989999999999999999999988877 568999999999999999999999999888654 6


Q ss_pred             hHHHHHHHHH--cCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           81 LSVGVHACRR--ANIGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        81 ~~~a~~~l~~--~~~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                      +.+||+++..  ..+.++++++|+|+|++|++++++|+.+| .+ |+++++++++.+.++++|.+.+++++.  . +.+.
T Consensus       151 ~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~-v~~~~~~~~~~~~~~~~g~~~~~~~~~--~-~~~~  226 (340)
T cd05284         151 GLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPAT-VIAVDRSEEALKLAERLGADHVLNASD--D-VVEE  226 (340)
T ss_pred             HHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHhCCcEEEcCCc--c-HHHH
Confidence            7899999854  35788999999998889999999999999 65 888888889999999999988776432  2 5555


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      ++++  ..+.++|+++|++|+.......+++++++|+++.+|...
T Consensus       227 i~~~--~~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~g~~~  269 (340)
T cd05284         227 VREL--TGGRGADAVIDFVGSDETLALAAKLLAKGGRYVIVGYGG  269 (340)
T ss_pred             HHHH--hCCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEEcCCC
Confidence            5554  245689999999997677899999999999999999654

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.96  E-value=6.6e-27  Score=192.45  Aligned_cols=204  Identities=33%  Similarity=0.618  Sum_probs=168.2

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEP   80 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~   80 (216)
                      ++|++++.+++||+|+..+..+|++|+.|..+++++|....+.+. +.+|+|++|+.++...++++|+++++.+++.+.+
T Consensus        71 ~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~~~  149 (341)
T PRK05396         71 EVGSEVTGFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGV-NRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIFDP  149 (341)
T ss_pred             EeCCCCCcCCCCCEEEECCCCCCCCChhhhCcChhhCCCcceeee-cCCCcceeeEEechHHeEECcCCCCHHHhHhhhH
Confidence            368889999999999999999999999999999999987655443 4579999999999999999999999988887667


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  160 (216)
                      +.+++.++.. ...++++++|.|+|++|++++++|+.+|+++++++++++++.++++++|++.+++++  ..++.+.+.+
T Consensus       150 ~~~~~~~~~~-~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~--~~~~~~~~~~  226 (341)
T PRK05396        150 FGNAVHTALS-FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVA--KEDLRDVMAE  226 (341)
T ss_pred             HHHHHHHHHc-CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCc--cccHHHHHHH
Confidence            7777665532 346899999988899999999999999996578888888999999999998877653  2355555555


Q ss_pred             HHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccch
Q 048013          161 IQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLT  210 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~  210 (216)
                      +  ..++++|++||++|....++..+++++++|+++.+|......++++.
T Consensus       227 ~--~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~  274 (341)
T PRK05396        227 L--GMTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGIPPGDMAIDWN  274 (341)
T ss_pred             h--cCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCcccHH
Confidence            4  24678999999999867789999999999999999976554444443

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=99.96  E-value=1e-26  Score=193.07  Aligned_cols=206  Identities=29%  Similarity=0.459  Sum_probs=167.2

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCC----------------------CCCCCccceeEEe
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGS----------------------PPVHGCLANQVVH   58 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~----------------------~~~~g~~~~~~~~   58 (216)
                      ++|+++..+++||+|++.+. .|++|.+|+.++.++|.+......                      ....|+|++|+.+
T Consensus        69 ~vG~~v~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v  147 (365)
T cd08278          69 AVGSAVTGLKPGDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVV  147 (365)
T ss_pred             EeCCCcccCCCCCEEEEccc-CCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEe
Confidence            36888889999999998764 899999999999999986532210                      0124899999999


Q ss_pred             cCCceEECCCCCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH
Q 048013           59 PADLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA  136 (216)
Q Consensus        59 ~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~  136 (216)
                      ++..++++|+++++++++.+. .+.+++.++ +...++++++++|+|+|++|++++++|+.+|+..++++++++++.+.+
T Consensus       148 ~~~~~~~iP~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~  227 (365)
T cd08278         148 HERNVVKVDKDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELA  227 (365)
T ss_pred             cchhEEECCCCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence            999999999999998887553 677888877 567789999999998899999999999999997689999999999999


Q ss_pred             HHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC--CCCcccchhh
Q 048013          137 KKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH--REMTVPLTPA  212 (216)
Q Consensus       137 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~~~~~~~~  212 (216)
                      +++|++.+++++  ..++.+.+.++  + +.++|+++|++|....+..++++++++|+++.+|...  ....+++..+
T Consensus       228 ~~~g~~~~i~~~--~~~~~~~v~~~--~-~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  300 (365)
T cd08278         228 KELGATHVINPK--EEDLVAAIREI--T-GGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPGAEVTLDVNDL  300 (365)
T ss_pred             HHcCCcEEecCC--CcCHHHHHHHH--h-CCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCcCCCCCccccCHHHH
Confidence            999998877643  24555555554  2 6689999999997677899999999999999999642  2344555443

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.95  E-value=2.7e-26  Score=191.92  Aligned_cols=200  Identities=32%  Similarity=0.548  Sum_probs=163.0

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCC---------------CC----CCCCCccceeEEecCC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGL---------------GS----PPVHGCLANQVVHPAD   61 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~---------------~~----~~~~g~~~~~~~~~~~   61 (216)
                      ++|++++.+++||+|+..+..+|++|++|+.++++.|++....               +.    ...+|+|++|+.+++.
T Consensus        68 ~vG~~v~~~~~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~  147 (386)
T cd08283          68 EVGPEVRNLKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFA  147 (386)
T ss_pred             EeCCCCCCCCCCCEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEcccc
Confidence            4788999999999999998889999999999999999875321               11    1136899999999988


Q ss_pred             --ceEECCCCCCchhhhcch-hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH
Q 048013           62 --LCFKLPDNVSLEEGAMCE-PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK  138 (216)
Q Consensus        62 --~~~~ip~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~  138 (216)
                        .++++|+++++++++.+. .+.++|++++...+.++++|+|+|+|++|++++++|+..|+..++++++++++.+.+++
T Consensus       148 ~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~  227 (386)
T cd08283         148 DVGPFKIPDDLSDEKALFLSDILPTGYHAAELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS  227 (386)
T ss_pred             cCeEEECCCCCCHHHHhhhccchhhhHHHHhhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence              899999999999988654 77899999977788999999999989999999999999998568999999999999998


Q ss_pred             cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCC---------------------HHHHHHHHHHhhcCCEEEE
Q 048013          139 LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGF---------------------NKTMSTALSATRAGGKVCL  197 (216)
Q Consensus       139 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~---------------------~~~~~~~~~~l~~~G~~v~  197 (216)
                      ++...++++.. ..++.+.+.++  +.++++|++||++|+                     ...+..++++++++|+++.
T Consensus       228 ~~~~~vi~~~~-~~~~~~~l~~~--~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~  304 (386)
T cd08283         228 HLGAETINFEE-VDDVVEALREL--TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSI  304 (386)
T ss_pred             cCCcEEEcCCc-chHHHHHHHHH--cCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEE
Confidence            84445555432 11355555554  245689999999975                     2367889999999999999


Q ss_pred             eccCCC
Q 048013          198 VGMGHR  203 (216)
Q Consensus       198 ~g~~~~  203 (216)
                      +|....
T Consensus       305 ~g~~~~  310 (386)
T cd08283         305 IGVYGG  310 (386)
T ss_pred             EcCCCC
Confidence            996543

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.95  E-value=1.5e-26  Score=194.20  Aligned_cols=198  Identities=23%  Similarity=0.256  Sum_probs=164.0

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-h
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-P   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~   80 (216)
                      +|++++.+++||+|++.+...|++|++|+.+++++|......|.....|+|+||+.+++..++++|+++++++++.+. +
T Consensus        92 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~l~~~~aa~~~~~  171 (398)
T TIGR01751        92 VGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLTWEEAACPGLT  171 (398)
T ss_pred             eCCCCCCCCCCCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeEECCCCCCHHHHhhccch
Confidence            688888999999999999999999999999999999876555544457999999999999999999999998888554 7


Q ss_pred             hHHHHHHHH---HcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCc-----
Q 048013           81 LSVGVHACR---RANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNL-----  151 (216)
Q Consensus        81 ~~~a~~~l~---~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~-----  151 (216)
                      +.++|+++.   ..++.++++++|+|+ |++|++++++|+.+|++ +++++.++++.+.++++|++.+++.+..+     
T Consensus       172 ~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~-vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~  250 (398)
T TIGR01751       172 GATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGGN-PVAVVSSPEKAEYCRELGAEAVIDRNDFGHWGRL  250 (398)
T ss_pred             HHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCe-EEEEcCCHHHHHHHHHcCCCEEecCCCcchhhcc
Confidence            788999874   367889999999997 99999999999999996 77788888899999999999888753210     


Q ss_pred             ---------------ccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          152 ---------------QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       152 ---------------~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                                     ..+.+.+.++  +.++++|++|||+|. ..+...+++++++|+++.+|....
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~  314 (398)
T TIGR01751       251 PDLNTQAPKEWTKSFKRFGKRIREL--TGGEDPDIVFEHPGR-ATFPTSVFVCRRGGMVVICGGTTG  314 (398)
T ss_pred             ccccccccchhhhcchhHHHHHHHH--cCCCCceEEEECCcH-HHHHHHHHhhccCCEEEEEccccC
Confidence                           0122223333  245789999999997 678889999999999999997543

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.95  E-value=3e-26  Score=188.63  Aligned_cols=197  Identities=34%  Similarity=0.572  Sum_probs=164.4

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCC---CCCCCCccceeEEecCC--ceEECCCCCCchhh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG---SPPVHGCLANQVVHPAD--LCFKLPDNVSLEEG   75 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~--~~~~ip~~~~~~~a   75 (216)
                      ++|++|+.+++||+|+..+..+|++|.+|..++.+.|++...+|   ....+|+|++|+.+++.  .++++|++++++++
T Consensus        67 ~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~~a  146 (344)
T cd08284          67 EVGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSDEAA  146 (344)
T ss_pred             eeCCCccccCCCCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEECCCCCCHHHh
Confidence            36888999999999999888999999999999999998765542   22346999999999975  99999999999888


Q ss_pred             hcc-hhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccH
Q 048013           76 AMC-EPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI  154 (216)
Q Consensus        76 a~~-~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  154 (216)
                      +.+ ..+.++|++++...+.++++|+|+|+|++|++++++|+.+|+.+++++++++++.+.++++|... ++.  ...++
T Consensus       147 ~~l~~~~~ta~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~-~~~--~~~~~  223 (344)
T cd08284         147 LLLGDILPTGYFGAKRAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEP-INF--EDAEP  223 (344)
T ss_pred             hhhcCchHHHHhhhHhcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeE-Eec--CCcCH
Confidence            854 47889999997778889999999998999999999999999745888888888988889999753 343  23455


Q ss_pred             HHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          155 AEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       155 ~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      .+.+.++.  .++++|++||++++.......+++++++|+++.+|...
T Consensus       224 ~~~l~~~~--~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g~~~  269 (344)
T cd08284         224 VERVREAT--EGRGADVVLEAVGGAAALDLAFDLVRPGGVISSVGVHT  269 (344)
T ss_pred             HHHHHHHh--CCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEECcCC
Confidence            55565543  45789999999998678899999999999999999655

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.95  E-value=2.4e-26  Score=188.92  Aligned_cols=201  Identities=41%  Similarity=0.680  Sum_probs=163.5

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCC----CCCCCccceeEEecCCceEECCCCCCchhhhc
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGS----PPVHGCLANQVVHPADLCFKLPDNVSLEEGAM   77 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~   77 (216)
                      +|++|+.|++||+|+..+..+|++|.+|..|+.++|.....++.    ...+|+|++|+.++++.++++|+++++++++.
T Consensus        68 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~  147 (339)
T cd08232          68 VGPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAAL  147 (339)
T ss_pred             eCCCCCcCCCCCEEEEccCCcCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEECcCCCCHHHhhh
Confidence            68888899999999999999999999999999999998654442    12469999999999999999999999999887


Q ss_pred             chhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           78 CEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        78 ~~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                      ..++.++|+++......++++|||.|+|.+|++++++|+.+|++.++++++++++.+.+++++.+.+++++.  .+    
T Consensus       148 ~~~~~~a~~~l~~~~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~--~~----  221 (339)
T cd08232         148 AEPLAVALHAVNRAGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLAR--DP----  221 (339)
T ss_pred             cchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCc--hh----
Confidence            668888999886554448999999888999999999999999855888888888888888999888776432  22    


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccc
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPL  209 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~  209 (216)
                      +.++. ....++|+++|+++....++..+++|+++|+++.+|....+.++++
T Consensus       222 ~~~~~-~~~~~vd~vld~~g~~~~~~~~~~~L~~~G~~v~~g~~~~~~~~~~  272 (339)
T cd08232         222 LAAYA-ADKGDFDVVFEASGAPAALASALRVVRPGGTVVQVGMLGGPVPLPL  272 (339)
T ss_pred             hhhhh-ccCCCccEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCccCcH
Confidence            22222 1235699999999975678899999999999999985443333333

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.95  E-value=5.4e-26  Score=187.04  Aligned_cols=196  Identities=39%  Similarity=0.693  Sum_probs=168.3

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCc-----eEECCCCCCchhhh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADL-----CFKLPDNVSLEEGA   76 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~ip~~~~~~~aa   76 (216)
                      +|++++.+++||+|+..+..+|++|+.|..++.++|.+...++. ...|+|++|+.+++..     ++++|+++++.+++
T Consensus        68 ~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa  146 (343)
T cd08235          68 VGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGN-LYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAA  146 (343)
T ss_pred             eCCCCCCCCCCCEEEEccCCCCCCChHHHCcCcccCCCcceecc-CCCCcceeeEEecccccccccEEECCCCCCHHHHH
Confidence            68888889999999999999999999999999999998776665 4569999999999999     99999999999988


Q ss_pred             cchhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHH
Q 048013           77 MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAE  156 (216)
Q Consensus        77 ~~~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  156 (216)
                      .+.++.++|++++..+++++++|+|+|+|++|++++++|+..|++.++++++++++.+.+++++.+.+++++  +.++.+
T Consensus       147 ~~~~~~~a~~~l~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~--~~~~~~  224 (343)
T cd08235         147 LVEPLACCINAQRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAA--EEDLVE  224 (343)
T ss_pred             hhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCC--ccCHHH
Confidence            767888899999767899999999998899999999999999996578888888888888889988776643  345655


Q ss_pred             HHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          157 EVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       157 ~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      .+.++  ..++++|+++|++++.......+++++++|+++.+|...
T Consensus       225 ~i~~~--~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~~~~  268 (343)
T cd08235         225 KVREL--TDGRGADVVIVATGSPEAQAQALELVRKGGRILFFGGLP  268 (343)
T ss_pred             HHHHH--hCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEeccC
Confidence            56554  245679999999998668889999999999999998543

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.95  E-value=4.4e-26  Score=187.81  Aligned_cols=196  Identities=31%  Similarity=0.528  Sum_probs=165.0

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCC--ceEECCCCCCchhhhcch
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD--LCFKLPDNVSLEEGAMCE   79 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~~~~~aa~~~   79 (216)
                      +|+++..+++||+|+..+...|++|+.|..|+.++|+++...+. ..+|+|++|+.+++.  .++++|+++++++++.+.
T Consensus        69 ~G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~  147 (345)
T cd08260          69 VGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGF-THPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLG  147 (345)
T ss_pred             ECCCCccCCCCCEEEECCCCCCCCCccccCcCcccCCCCccccc-CCCCcceeEEEcccccCceEECCCCCCHHHhhhhc
Confidence            57888889999999987778999999999999999998765554 237999999999985  899999999998888654


Q ss_pred             -hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           80 -PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        80 -~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                       ++.++|+++ +..++.++++++|+|+|++|++++++|+.+|++ ++++++++++.+.++++|++.+++++. ..++.+.
T Consensus       148 ~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~-vi~~~~~~~~~~~~~~~g~~~~i~~~~-~~~~~~~  225 (345)
T cd08260         148 CRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGAR-VIAVDIDDDKLELARELGAVATVNASE-VEDVAAA  225 (345)
T ss_pred             cchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEEeCCHHHHHHHHHhCCCEEEcccc-chhHHHH
Confidence             778999998 567788999999999999999999999999996 888889999999999999988877532 1345555


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      +.++.  .+ ++|++||++|........+++++++|+++.+|....
T Consensus       226 ~~~~~--~~-~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g~~~~  268 (345)
T cd08260         226 VRDLT--GG-GAHVSVDALGIPETCRNSVASLRKRGRHVQVGLTLG  268 (345)
T ss_pred             HHHHh--CC-CCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeCCcCC
Confidence            55442  34 899999999975778899999999999999996543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.95  E-value=5.6e-26  Score=187.19  Aligned_cols=206  Identities=33%  Similarity=0.561  Sum_probs=168.6

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCC--ceEECCCCCCchhhhcc-
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD--LCFKLPDNVSLEEGAMC-   78 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~~~~~aa~~-   78 (216)
                      +|++++.+++||+|+..+...|++|++|..+..+.|....+.......|+|++|+.++++  .++++|+++++.+++.+ 
T Consensus        69 ~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~  148 (345)
T cd08286          69 VGSAVTNFKVGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLS  148 (345)
T ss_pred             eccCccccCCCCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEECCCCCCHHHhhhcc
Confidence            688888899999999998899999999999999888865442122346999999999987  89999999999888855 


Q ss_pred             hhhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           79 EPLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        79 ~~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                      ..+.++|+++ +..++.++++++|+|+|++|++++|+++.+|..+++++++++++.+.++++|++.++++..  .++.+.
T Consensus       149 ~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~--~~~~~~  226 (345)
T cd08286         149 DILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAK--GDAIEQ  226 (345)
T ss_pred             chhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceecccc--ccHHHH
Confidence            4677888875 5677899999999989999999999999999445888989999989999999988777532  345555


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchh
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTP  211 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~  211 (216)
                      +.+++  .+.++|++||+++....+..+++.|+++|+++.+|......++++..
T Consensus       227 i~~~~--~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~  278 (345)
T cd08286         227 VLELT--DGRGVDVVIEAVGIPATFELCQELVAPGGHIANVGVHGKPVDLHLEK  278 (345)
T ss_pred             HHHHh--CCCCCCEEEECCCCHHHHHHHHHhccCCcEEEEecccCCCCCcCHHH
Confidence            55543  45689999999998778899999999999999999655444555444

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.95  E-value=7.5e-26  Score=185.87  Aligned_cols=200  Identities=41%  Similarity=0.724  Sum_probs=167.3

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchhh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL   81 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~   81 (216)
                      +|++++.+++||+|+..+..+|++|..|+.++.++|......+. ...|+|++|+.++++ ++++|+++++++++.++++
T Consensus        68 ~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~~~~  145 (337)
T cd08261          68 VGEGVAGLKVGDRVVVDPYISCGECYACRKGRPNCCENLQVLGV-HRDGGFAEYIVVPAD-ALLVPEGLSLDQAALVEPL  145 (337)
T ss_pred             eCCCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCCCeeee-cCCCcceeEEEechh-eEECCCCCCHHHhhhhchH
Confidence            67888889999999998888999999999999999965444333 236899999999999 9999999999998876777


Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHH
Q 048013           82 SVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKI  161 (216)
Q Consensus        82 ~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  161 (216)
                      .+++++++..++.++++|||+|+|.+|.+++++|+.+|++ ++++.+++++.+.+++++.+.++++..  .++.+.+.++
T Consensus       146 ~~a~~~~~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~-v~~~~~s~~~~~~~~~~g~~~v~~~~~--~~~~~~l~~~  222 (337)
T cd08261         146 AIGAHAVRRAGVTAGDTVLVVGAGPIGLGVIQVAKARGAR-VIVVDIDDERLEFARELGADDTINVGD--EDVAARLREL  222 (337)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEECCCHHHHHHHHHhCCCEEecCcc--cCHHHHHHHH
Confidence            7888888777899999999998899999999999999995 888888899989999999888877543  4555566554


Q ss_pred             HHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCccc
Q 048013          162 QKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVP  208 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~  208 (216)
                      .  .+.++|+++|++++...+..++++|+++|+++.+|.......++
T Consensus       223 ~--~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~g~~~~~~~~~  267 (337)
T cd08261         223 T--DGEGADVVIDATGNPASMEEAVELVAHGGRVVLVGLSKGPVTFP  267 (337)
T ss_pred             h--CCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEcCCCCCCccC
Confidence            2  45679999999988678899999999999999998655433333

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.95  E-value=4e-26  Score=188.03  Aligned_cols=198  Identities=34%  Similarity=0.575  Sum_probs=165.6

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCC--CCCCCCccceeEEecCC--ceEECCCCCCchhhhc
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG--SPPVHGCLANQVVHPAD--LCFKLPDNVSLEEGAM   77 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~--~~~~ip~~~~~~~aa~   77 (216)
                      +|++++.+++||+|+..+..+|++|.+|..+...+|++.....  ....+|+|++|++++++  .++++|+++++++++.
T Consensus        69 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~  148 (347)
T cd05278          69 VGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALM  148 (347)
T ss_pred             ECCCccccCCCCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEECCCCCCHHHHhh
Confidence            6889999999999999999999999999999999998765322  11246999999999987  8999999999998886


Q ss_pred             ch-hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHH
Q 048013           78 CE-PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAE  156 (216)
Q Consensus        78 ~~-~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  156 (216)
                      ++ ++.++|+++...+++++++|+|.|+|++|++++++|+.+|..+++++++++++.+.++++|.+.+++++.  .++.+
T Consensus       149 l~~~~~ta~~~~~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~--~~~~~  226 (347)
T cd05278         149 LSDILPTGFHGAELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKN--GDIVE  226 (347)
T ss_pred             hcchhhheeehhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCc--chHHH
Confidence            54 7889999887678899999999888999999999999999745888888888888999999888776532  34555


Q ss_pred             HHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          157 EVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       157 ~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      .++++  ..++++|++||++++...+...+++|+++|+++.+|....
T Consensus       227 ~i~~~--~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  271 (347)
T cd05278         227 QILEL--TGGRGVDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGK  271 (347)
T ss_pred             HHHHH--cCCCCCcEEEEccCCHHHHHHHHHHhhcCCEEEEEcCCCC
Confidence            55554  2456899999999986678999999999999999985443

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.95  E-value=1e-25  Score=185.62  Aligned_cols=204  Identities=30%  Similarity=0.542  Sum_probs=166.7

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCC--ceEECCCCCCchhhhc-
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD--LCFKLPDNVSLEEGAM-   77 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~ip~~~~~~~aa~-   77 (216)
                      ++|+++..+++||+|+..+..+|++|..|..+..++|.+....+. ..+|+|++|+.+|..  .++++|++++++.+.. 
T Consensus        67 ~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~  145 (345)
T cd08287          67 EVGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGA-FVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLP  145 (345)
T ss_pred             EeCCCCCccCCCCEEEeccccCCCCChhhhCcCcccCCCCCcccC-CCCCceEEEEEcchhhCceEECCCCCChhhhhhh
Confidence            368888899999999986678899999999999999997766554 567999999999975  9999999998732211 


Q ss_pred             -----chhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcc
Q 048013           78 -----CEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQ  152 (216)
Q Consensus        78 -----~~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~  152 (216)
                           ...+.++++++....++++++++|.|+|++|++++++|+..|++.++++++++++.+.++++|++.++++..  .
T Consensus       146 ~~~~l~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~--~  223 (345)
T cd08287         146 SLLALSDVMGTGHHAAVSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERG--E  223 (345)
T ss_pred             hhHhhhcHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCc--c
Confidence                 135778899887778899999999888999999999999999976888888888888999999988877532  3


Q ss_pred             cHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccc
Q 048013          153 DIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPL  209 (216)
Q Consensus       153 ~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~  209 (216)
                      ++.+.+.++  ..+.++|+++|++|+...+..++++++++|+++.+|......++++
T Consensus       224 ~~~~~i~~~--~~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~  278 (345)
T cd08287         224 EAVARVREL--TGGVGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHGGVELDV  278 (345)
T ss_pred             cHHHHHHHh--cCCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEecccCCCCccCH
Confidence            455555554  2456899999999987788999999999999999996554444444

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.95  E-value=9.4e-26  Score=185.59  Aligned_cols=200  Identities=35%  Similarity=0.634  Sum_probs=167.0

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchhh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL   81 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~   81 (216)
                      +|++++.+++||+|+..+...|++|..|..+..++|+..+.++. ...|+|++|+.++++.++++|++++++.++...++
T Consensus        70 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~  148 (340)
T TIGR00692        70 IGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGV-DTDGCFAEYAVVPAQNIWKNPKSIPPEYATIQEPL  148 (340)
T ss_pred             ECCCCCcCCCCCEEEECCcCCCCCChhhhCcChhhCcCcceEee-cCCCcceeEEEeehHHcEECcCCCChHhhhhcchH
Confidence            68888899999999999999999999999999999998776654 35699999999999999999999998777766688


Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHH
Q 048013           82 SVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKI  161 (216)
Q Consensus        82 ~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  161 (216)
                      .++++++ ....+++++++|.|+|++|++++++++.+|++.|+++++++++.+.++++|++.++++.  ..++.+.+.++
T Consensus       149 ~~a~~~~-~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~--~~~~~~~l~~~  225 (340)
T TIGR00692       149 GNAVHTV-LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPF--KEDVVKEVADL  225 (340)
T ss_pred             HHHHHHH-HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEccc--ccCHHHHHHHh
Confidence            8888876 34467899999988899999999999999986577888888899999999997776642  24555555554


Q ss_pred             HHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcc
Q 048013          162 QKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTV  207 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~  207 (216)
                      .  .++++|+++|++++...+...+++|+++|+++.+|......++
T Consensus       226 ~--~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~  269 (340)
T TIGR00692       226 T--DGEGVDVFLEMSGAPKALEQGLQAVTPGGRVSLLGLPPGKVTI  269 (340)
T ss_pred             c--CCCCCCEEEECCCCHHHHHHHHHhhcCCCEEEEEccCCCCccc
Confidence            2  4578999999999767788999999999999999975443333

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.95  E-value=1.3e-25  Score=184.16  Aligned_cols=202  Identities=33%  Similarity=0.597  Sum_probs=168.6

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-hh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-EP   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~   80 (216)
                      +|++++.+++||+|+..+..+|++|++|..++.++|......+. ...|+|++|+.++.+.++++|+++++.+++.+ .+
T Consensus        71 ~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~  149 (338)
T cd08254          71 VGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGL-GIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDA  149 (338)
T ss_pred             ECCCCccCCCCCEEEECCCCCCCCChhhhCcCcccCCCCCcccc-ccCCcceeeEEechHHeEECCCCCCHHHhhhhcch
Confidence            68888899999999999999999999999999999976655555 45799999999999999999999999888855 58


Q ss_pred             hHHHHHHHH-HcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHH
Q 048013           81 LSVGVHACR-RANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE  159 (216)
Q Consensus        81 ~~~a~~~l~-~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (216)
                      +.++|+++. ...+++++++||.|+|.+|++++++|+..|++ |++++.++++.+.++++|.+.++...  .....+.+ 
T Consensus       150 ~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~-V~~~~~s~~~~~~~~~~g~~~~~~~~--~~~~~~~~-  225 (338)
T cd08254         150 VLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAA-VIAVDIKEEKLELAKELGADEVLNSL--DDSPKDKK-  225 (338)
T ss_pred             HHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHhCCCEEEcCC--CcCHHHHH-
Confidence            889999984 46689999999988899999999999999996 89999999999999999988776642  23444444 


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccch
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLT  210 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~  210 (216)
                      +.  ..++++|+++|+++.....+.++++|+++|+++.+|.......+++.
T Consensus       226 ~~--~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~  274 (338)
T cd08254         226 AA--GLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLGRDKLTVDLS  274 (338)
T ss_pred             HH--hcCCCceEEEECCCCHHHHHHHHHHhhcCCEEEEECCCCCCCccCHH
Confidence            22  35678999999999767889999999999999999975544444443

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.95  E-value=1.2e-25  Score=185.04  Aligned_cols=197  Identities=42%  Similarity=0.723  Sum_probs=167.7

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchhh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL   81 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~   81 (216)
                      +|+++..|++||+|+..+...|.+|.+|..++++.|++...++. ...|+|++|+.+|++.++++|+++++++++.++++
T Consensus        67 ~g~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~~~~  145 (343)
T cd08236          67 VGSGVDDLAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGS-RRDGAFAEYVSVPARNLIKIPDHVDYEEAAMIEPA  145 (343)
T ss_pred             ECCCCCcCCCCCEEEEcCCCCCCCChhHHCcChhhCCCcceEec-ccCCcccceEEechHHeEECcCCCCHHHHHhcchH
Confidence            57888889999999999888999999999999999988765554 35799999999999999999999999998877778


Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHH
Q 048013           82 SVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKI  161 (216)
Q Consensus        82 ~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  161 (216)
                      .++|+++....++++++|+|+|+|.+|++++++|+.+|++.++++++++++.+.++++|.+.+++.+.  .. .+.+.+.
T Consensus       146 ~ta~~~l~~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~--~~-~~~~~~~  222 (343)
T cd08236         146 AVALHAVRLAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKE--ED-VEKVREL  222 (343)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCcc--cc-HHHHHHH
Confidence            89999987777899999999988999999999999999965888888888888888899887776532  23 4444444


Q ss_pred             HHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCC
Q 048013          162 QKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHRE  204 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~  204 (216)
                        ..++++|+++|++|....+..++++|+++|+++.+|...++
T Consensus       223 --~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~  263 (343)
T cd08236         223 --TEGRGADLVIEAAGSPATIEQALALARPGGKVVLVGIPYGD  263 (343)
T ss_pred             --hCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcccCCC
Confidence              24567999999998867889999999999999999965443

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.95  E-value=1.5e-25  Score=185.08  Aligned_cols=197  Identities=29%  Similarity=0.470  Sum_probs=164.9

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-h
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-E   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~   79 (216)
                      ++|++++.+++||+|+..+...|++|..|..++.+.|......+. ...|+|++|+.++.+.++++|+++++.+++.+ .
T Consensus        80 ~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~~  158 (350)
T cd08240          80 AVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGI-FQDGGYAEYVIVPHSRYLVDPGGLDPALAATLAC  158 (350)
T ss_pred             eeCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCceee-eccCcceeeEEecHHHeeeCCCCCCHHHeehhhc
Confidence            368888899999999999999999999999999999987655554 35699999999999999999999999988854 4


Q ss_pred             hhHHHHHHHHHc-CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           80 PLSVGVHACRRA-NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        80 ~~~~a~~~l~~~-~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      .+.+||++++.. ..+++++++|+|+|++|++++++|+.+|+++|++++.++++.+.++++|++.+++.  ...++.+.+
T Consensus       159 ~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~  236 (350)
T cd08240         159 SGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNG--SDPDAAKRI  236 (350)
T ss_pred             hhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecC--CCccHHHHH
Confidence            778999998654 45688999999889999999999999999768888889999999999998776653  223444445


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      .+.   .++++|++||++|.......++++|+++|+++.+|....
T Consensus       237 ~~~---~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~  278 (350)
T cd08240         237 IKA---AGGGVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGG  278 (350)
T ss_pred             HHH---hCCCCcEEEECCCCHHHHHHHHHHhhcCCeEEEECCCCC
Confidence            443   233899999999976778999999999999999986544

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.95  E-value=1.8e-25  Score=185.57  Aligned_cols=197  Identities=35%  Similarity=0.583  Sum_probs=163.5

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCC---------------CC----CCCCCccceeEEecCCc
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGL---------------GS----PPVHGCLANQVVHPADL   62 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~---------------~~----~~~~g~~~~~~~~~~~~   62 (216)
                      +|++++.+++||+|+..+..+|++|.+|..++.+.|++...+               |.    ....|+|++|+.++++.
T Consensus        68 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  147 (363)
T cd08279          68 VGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEAS  147 (363)
T ss_pred             eCCCccccCCCCEEEECCCCCCCCChhhcCCCcccCcccccccccccCCCcccccccCccccccccCccceeeEEecccc
Confidence            688888899999999999999999999999999999865310               00    01358999999999999


Q ss_pred             eEECCCCCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcC
Q 048013           63 CFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLG  140 (216)
Q Consensus        63 ~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g  140 (216)
                      ++++|+++++++++.+. .+.++|.++ +..++.++++++|+|+|++|++++++|+..|+++|+++++++++.+.++++|
T Consensus       148 ~~~lp~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g  227 (363)
T cd08279         148 VVKIDDDIPLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFG  227 (363)
T ss_pred             EEECCCCCChHHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhC
Confidence            99999999998888655 667888876 5677899999999988999999999999999965888888999999889999


Q ss_pred             CCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          141 ADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      ++.+++.+  ..++.+.+.++.  .++++|+++|++++...+...+++++++|+++.+|...
T Consensus       228 ~~~vv~~~--~~~~~~~l~~~~--~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g~~~  285 (363)
T cd08279         228 ATHTVNAS--EDDAVEAVRDLT--DGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGP  285 (363)
T ss_pred             CeEEeCCC--CccHHHHHHHHc--CCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEecCC
Confidence            87776642  335555555542  35679999999997677899999999999999998644

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=1.8e-25  Score=182.22  Aligned_cols=190  Identities=28%  Similarity=0.492  Sum_probs=159.9

Q ss_pred             CCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchhhHHHHHHH
Q 048013            9 LVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHAC   88 (216)
Q Consensus         9 ~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l   88 (216)
                      +++||||...+..+|++|.+|..+.+++|.+....+....+|+|++|+.++++.++++|++++.++++.+.++.++++.+
T Consensus        69 ~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~~~~~~~~~~~  148 (319)
T cd08242          69 ELVGKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFAEPLAAALEIL  148 (319)
T ss_pred             CCCCCeEEECCCcCCCCChhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEECcCCCCHHHhhhhhHHHHHHHHH
Confidence            78999999999999999999999999999887665543357999999999999999999999998888656666778777


Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      +..+++++++++|+|+|.+|++++|+|+.+|++ +++++.++++.+.++++|++.+++++..             +.+++
T Consensus       149 ~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~-vi~~~~~~~~~~~~~~~g~~~~~~~~~~-------------~~~~~  214 (319)
T cd08242         149 EQVPITPGDKVAVLGDGKLGLLIAQVLALTGPD-VVLVGRHSEKLALARRLGVETVLPDEAE-------------SEGGG  214 (319)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEEcCCHHHHHHHHHcCCcEEeCcccc-------------ccCCC
Confidence            888899999999999899999999999999996 8888889999999999999877654210             24568


Q ss_pred             ccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhh
Q 048013          169 IDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPA  212 (216)
Q Consensus       169 ~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  212 (216)
                      +|++||++|+...+...+++++++|+++..+.......+++..+
T Consensus       215 ~d~vid~~g~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~  258 (319)
T cd08242         215 FDVVVEATGSPSGLELALRLVRPRGTVVLKSTYAGPASFDLTKA  258 (319)
T ss_pred             CCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCCCccCHHHh
Confidence            99999999986778899999999999998876544445554443

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.94  E-value=2.1e-25  Score=182.24  Aligned_cols=195  Identities=29%  Similarity=0.463  Sum_probs=159.8

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-h
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-P   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~   80 (216)
                      +|++++.+++||+|+..+...|++|.+|..|+.++|.+...++. ...|+|++|+.+++..++++|+++++++++.+. .
T Consensus        69 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~  147 (325)
T cd08264          69 VGDHVKGVKKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGV-VSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVA  147 (325)
T ss_pred             ECCCCCCCCCCCEEEECCCcCCCCChhhcCCCccccCccceeec-cCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhh
Confidence            68889899999999999888999999999999999998766654 356899999999999999999999998888654 6


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE  159 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (216)
                      +.++|++++..+++++++++|+|+ |++|++++++|+.+|++ ++++++    .+.++++|++.+++.+    +..+.+.
T Consensus       148 ~~~a~~~l~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~-v~~~~~----~~~~~~~g~~~~~~~~----~~~~~l~  218 (325)
T cd08264         148 ALTAYHALKTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAE-VIAVSR----KDWLKEFGADEVVDYD----EVEEKVK  218 (325)
T ss_pred             hHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCe-EEEEeH----HHHHHHhCCCeeecch----HHHHHHH
Confidence            678999987788999999999997 99999999999999996 777653    3666789987776532    2233344


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC-CCcccchh
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR-EMTVPLTP  211 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~  211 (216)
                      ++   . +++|++++++|+ ..+...+++|+++|+++.+|.... ...+++..
T Consensus       219 ~~---~-~~~d~vl~~~g~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~  266 (325)
T cd08264         219 EI---T-KMADVVINSLGS-SFWDLSLSVLGRGGRLVTFGTLTGGEVKLDLSD  266 (325)
T ss_pred             HH---h-CCCCEEEECCCH-HHHHHHHHhhccCCEEEEEecCCCCCCccCHHH
Confidence            43   2 579999999998 678999999999999999986422 23444443

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.94  E-value=5e-25  Score=181.19  Aligned_cols=188  Identities=32%  Similarity=0.505  Sum_probs=153.7

Q ss_pred             CCCCCCCC-CCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch
Q 048013            1 KVGSEVKT-LVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE   79 (216)
Q Consensus         1 ~vG~~v~~-~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~   79 (216)
                      ++|++++. +++||+|+..+..+|++|+.|..|..           ....|+|++|+.+|.+.++++|++++++++++..
T Consensus        77 ~vG~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~-----------~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~~~~  145 (341)
T cd08262          77 DYGPGTERKLKVGTRVTSLPLLLCGQGASCGIGLS-----------PEAPGGYAEYMLLSEALLLRVPDGLSMEDAALTE  145 (341)
T ss_pred             EeCCCCcCCCCCCCEEEecCCcCCCCChhhhCCCC-----------cCCCCceeeeEEechHHeEECCCCCCHHHhhhhh
Confidence            36888887 99999999999999999999943321           1246899999999999999999999999888656


Q ss_pred             hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcc--cHHHH
Q 048013           80 PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQ--DIAEE  157 (216)
Q Consensus        80 ~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~  157 (216)
                      ++.++|+++...+++++++|+|+|+|++|.+++|+|+.+|++.++++++++++.+.++++|++.+++++....  .+. .
T Consensus       146 ~~~~a~~~~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~-~  224 (341)
T cd08262         146 PLAVGLHAVRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAADSPFAAWA-A  224 (341)
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCCcCHHHHHH-H
Confidence            7888998887788999999999988999999999999999976788888899999999999887776543211  111 2


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +.+.  ..++++|++||++++...+..++++++++|+++.+|...
T Consensus       225 ~~~~--~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~  267 (341)
T cd08262         225 ELAR--AGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVGVCM  267 (341)
T ss_pred             HHHH--hCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCC
Confidence            2222  245679999999998556788999999999999998653

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05281 TDH Threonine dehydrogenase

Probab=99.94  E-value=3.8e-25  Score=182.06  Aligned_cols=195  Identities=36%  Similarity=0.626  Sum_probs=162.7

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchhh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL   81 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~   81 (216)
                      +|++++.+++||+|+..+..+|+.|..|..+++++|...++.+. ...|+|++|+.++++.++++|++++++.+++..++
T Consensus        72 ~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~v~v~~~~~~~lP~~~~~~~a~~~~~~  150 (341)
T cd05281          72 VGEGVTRVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGV-DTDGCFAEYVVVPEENLWKNDKDIPPEIASIQEPL  150 (341)
T ss_pred             ECCCCCCCCCCCEEEECCccCCCCChHHHCcCcccCcccceEec-cCCCcceEEEEechHHcEECcCCCCHHHhhhhhHH
Confidence            57788889999999998889999999999999999987655554 35689999999999999999999998777776788


Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHH
Q 048013           82 SVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKI  161 (216)
Q Consensus        82 ~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  161 (216)
                      .++++++. ...+++++++|+|+|++|++++++++.+|.++++++++++++.+.++++|.+.+++.+  ..++. .+.++
T Consensus       151 ~~a~~~~~-~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~-~~~~~  226 (341)
T cd05281         151 GNAVHTVL-AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPR--EEDVV-EVKSV  226 (341)
T ss_pred             HHHHHHHH-hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcc--cccHH-HHHHH
Confidence            88888775 3457899999988899999999999999985578888888999999999988776542  23444 45554


Q ss_pred             HHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          162 QKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      .  .++++|++||++|.......++++|+++|+++.+|....
T Consensus       227 ~--~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  266 (341)
T cd05281         227 T--DGTGVDVVLEMSGNPKAIEQGLKALTPGGRVSILGLPPG  266 (341)
T ss_pred             c--CCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCC
Confidence            2  457899999999986778899999999999999986544

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.94  E-value=4.8e-25  Score=181.07  Aligned_cols=201  Identities=30%  Similarity=0.521  Sum_probs=163.2

Q ss_pred             CCCCCCCCCCCCEEEEcC-CcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-
Q 048013            2 VGSEVKTLVPGDRVALEP-GISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-   79 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~-~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-   79 (216)
                      +|++++.|++||+|+..+ ..+|++|+.|..+..++|.+....+. ..+|+|+||+.++.+.++++|+++++++++.+. 
T Consensus        68 ~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~  146 (338)
T PRK09422         68 VGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGY-TVDGGMAEQCIVTADYAVKVPEGLDPAQASSITC  146 (338)
T ss_pred             ECCCCccCCCCCEEEEccCCCCCCCChhhcCCCcccCCCccccCc-cccCcceeEEEEchHHeEeCCCCCCHHHeehhhc
Confidence            678888899999998754 56899999999999999987655444 357999999999999999999999999888654 


Q ss_pred             hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           80 PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARA-FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        80 ~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~-~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      .+.++|++++...++++++++|+|+|++|++++++|+. +|++ ++++++++++++.++++|.+.+++... ..++.+.+
T Consensus       147 ~~~ta~~~~~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~-v~~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~~v  224 (338)
T PRK09422        147 AGVTTYKAIKVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAK-VIAVDINDDKLALAKEVGADLTINSKR-VEDVAKII  224 (338)
T ss_pred             chhHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCe-EEEEeCChHHHHHHHHcCCcEEecccc-cccHHHHH
Confidence            67789999977889999999999999999999999998 5995 899999999999999999988776422 13444455


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccc
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPL  209 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~  209 (216)
                      ++.   .+ ++|.++.+.++...+..++++++++|+++.+|......++++
T Consensus       225 ~~~---~~-~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~  271 (338)
T PRK09422        225 QEK---TG-GAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGLPPESMDLSI  271 (338)
T ss_pred             HHh---cC-CCcEEEEeCCCHHHHHHHHHhccCCCEEEEEeeCCCCceecH
Confidence            543   34 689555555555788999999999999999997554444443

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.94  E-value=5.6e-25  Score=178.62  Aligned_cols=207  Identities=40%  Similarity=0.713  Sum_probs=168.1

Q ss_pred             CCCCCCCCCCCCEEEEcCC-cCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchh
Q 048013            2 VGSEVKTLVPGDRVALEPG-ISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEP   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~-~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~   80 (216)
                      +|++++.+++||+|+..+. .+|+.|++|..+..+.|...+.++. ...|+|++|+.++...++++|++++++++++..+
T Consensus        70 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~  148 (306)
T cd08258          70 VGPDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGT-QADGGFAEYVLVPEESLHELPENLSLEAAALTEP  148 (306)
T ss_pred             ECCCcCcCCCCCEEEEccCcCCCCCCcchhCcCcccCCCCceeee-cCCCceEEEEEcchHHeEECcCCCCHHHHHhhch
Confidence            6888889999999998764 6899999999999999987654443 3569999999999999999999999998886667


Q ss_pred             hHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE--cCChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           81 LSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIV--DVDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        81 ~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                      +.++|+++ ....++++++++|.|+|++|++++++|+.+|++ |+++  ++++++.+.++++|++.+ ++  ...++.+.
T Consensus       149 ~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~~-v~~~~~~~~~~~~~~~~~~g~~~~-~~--~~~~~~~~  224 (306)
T cd08258         149 LAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGAT-VVVVGTEKDEVRLDVAKELGADAV-NG--GEEDLAEL  224 (306)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCE-EEEECCCCCHHHHHHHHHhCCccc-CC--CcCCHHHH
Confidence            78899887 567889999999988899999999999999996 6665  345567788888998766 54  33566666


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC-CCcccchhhhhc
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR-EMTVPLTPAAAS  215 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~  215 (216)
                      +.++.  .++++|.+||++|+...+...++.|+++|+++.+|+... ...+++..+++|
T Consensus       225 l~~~~--~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~  281 (306)
T cd08258         225 VNEIT--DGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFGPLAASIDVERIIQK  281 (306)
T ss_pred             HHHHc--CCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCCCcccCHHHHhhc
Confidence            65542  457899999999876778899999999999999998652 356666666543

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.94  E-value=6.3e-25  Score=180.50  Aligned_cols=200  Identities=26%  Similarity=0.432  Sum_probs=162.2

Q ss_pred             CCCCCCCCCCCCEEEEc-CCcCCCCCcchhCCCCCCCCCCCCCC------CCCCCCccceeEEecCCceEECCCCCCchh
Q 048013            2 VGSEVKTLVPGDRVALE-PGISCWQCDYCKGGRYNLCPESKGLG------SPPVHGCLANQVVHPADLCFKLPDNVSLEE   74 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~-~~~~~~~c~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~   74 (216)
                      +|++++.|++||+|++. ....|++|.+|..++.++|+......      .....|+|+||+.++.+.++++|+++++++
T Consensus        68 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~  147 (337)
T cd05283          68 VGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAA  147 (337)
T ss_pred             ECCCCcccCCCCEEEEecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEECCCCCCHHH
Confidence            68888999999999843 45589999999999999998765431      112468999999999999999999999998


Q ss_pred             hhcch-hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCccc
Q 048013           75 GAMCE-PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQD  153 (216)
Q Consensus        75 aa~~~-~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  153 (216)
                      ++.+. ...++|++++...++++++++|.|+|++|++++++++.+|++ ++++++++++.+.++++|++.+++...  .+
T Consensus       148 aa~l~~~~~ta~~~~~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~-v~~~~~~~~~~~~~~~~g~~~vi~~~~--~~  224 (337)
T cd05283         148 AAPLLCAGITVYSPLKRNGVGPGKRVGVVGIGGLGHLAVKFAKALGAE-VTAFSRSPSKKEDALKLGADEFIATKD--PE  224 (337)
T ss_pred             hhhhhhHHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCe-EEEEcCCHHHHHHHHHcCCcEEecCcc--hh
Confidence            88544 667899998777789999999988899999999999999995 888999989999999999887765321  12


Q ss_pred             HHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchh
Q 048013          154 IAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTP  211 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~  211 (216)
                      .   .+    ..++++|++||+++.......++++++++|+++.+|......++++..
T Consensus       225 ~---~~----~~~~~~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~  275 (337)
T cd05283         225 A---MK----KAAGSLDLIIDTVSASHDLDPYLSLLKPGGTLVLVGAPEEPLPVPPFP  275 (337)
T ss_pred             h---hh----hccCCceEEEECCCCcchHHHHHHHhcCCCEEEEEeccCCCCccCHHH
Confidence            1   11    135689999999998545789999999999999999765444455444

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.94  E-value=1.4e-24  Score=180.49  Aligned_cols=207  Identities=32%  Similarity=0.518  Sum_probs=168.1

Q ss_pred             CCCCCCC---CCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCC---------------------CCCCCccceeEE
Q 048013            2 VGSEVKT---LVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGS---------------------PPVHGCLANQVV   57 (216)
Q Consensus         2 vG~~v~~---~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~---------------------~~~~g~~~~~~~   57 (216)
                      +|+++++   +++||+|+..+..+|++|.+|..++.++|++...+..                     ....|+|++|+.
T Consensus        68 vG~~~~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  147 (367)
T cd08263          68 VGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAV  147 (367)
T ss_pred             eCCCCCCCCcCCCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccccccCCcceeEEE
Confidence            6788877   9999999998889999999999999999997642100                     013589999999


Q ss_pred             ecCCceEECCCCCCchhhhcch-hhHHHHHHHH-HcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHH
Q 048013           58 HPADLCFKLPDNVSLEEGAMCE-PLSVGVHACR-RANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV  135 (216)
Q Consensus        58 ~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~-~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~  135 (216)
                      ++.+.++++|+++++.+++.+. ++.++|+++. ...+.++++++|+|+|++|++++++|+.+|++.+++++.++++.+.
T Consensus       148 ~~~~~~~~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~  227 (367)
T cd08263         148 VPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAK  227 (367)
T ss_pred             echhhEEECCCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence            9999999999999999888654 7889999984 4567899999999889999999999999999768888888888888


Q ss_pred             HHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC--CCcccchhh
Q 048013          136 AKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR--EMTVPLTPA  212 (216)
Q Consensus       136 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~  212 (216)
                      ++++|++.+++.+  ..++.+.+.+..  .+.++|++||++++......++++++++|+++.+|....  ...+++.++
T Consensus       228 ~~~~g~~~v~~~~--~~~~~~~l~~~~--~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  302 (367)
T cd08263         228 AKELGATHTVNAA--KEDAVAAIREIT--GGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGGATAEIPITRL  302 (367)
T ss_pred             HHHhCCceEecCC--cccHHHHHHHHh--CCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEccCCCCCccccCHHHH
Confidence            8899998877643  345555555542  467899999999995478899999999999999986543  234444444

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.94  E-value=1.7e-24  Score=178.10  Aligned_cols=196  Identities=32%  Similarity=0.488  Sum_probs=166.4

Q ss_pred             CCCCCCCCCCCCEEEEcC-CcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-h
Q 048013            2 VGSEVKTLVPGDRVALEP-GISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-E   79 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~-~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~   79 (216)
                      +|++++.+++||+|+..+ ...|++|.+|..++.++|......+. ...|+|++|+.++++.++++|+++++.+++.+ .
T Consensus        71 vG~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~  149 (341)
T cd08297          71 VGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGY-TVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLC  149 (341)
T ss_pred             eCCCCCCCCCCCEEEEecCCCCCCCCccccCCCcccCCCcccccc-ccCCcceeEEEeccccEEECCCCCCHHHHHHHHc
Confidence            688888899999999875 57899999999999999988776665 45689999999999999999999999888854 4


Q ss_pred             hhHHHHHHHHHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           80 PLSVGVHACRRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        80 ~~~~a~~~l~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      .+.++|++++..++++++++||+|+ +.+|++++++|+.+|++ ++++.+++++.+.++++|.+.++++..  .++.+.+
T Consensus       150 ~~~ta~~~~~~~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~  226 (341)
T cd08297         150 AGVTVYKALKKAGLKPGDWVVISGAGGGLGHLGVQYAKAMGLR-VIAIDVGDEKLELAKELGADAFVDFKK--SDDVEAV  226 (341)
T ss_pred             chHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHcCCcEEEcCCC--ccHHHHH
Confidence            7778999987678899999999996 67999999999999995 889989999999888999988777532  3555555


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      .++.  .++++|+++|+.+.......++++++++|+++.+|....
T Consensus       227 ~~~~--~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~  269 (341)
T cd08297         227 KELT--GGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVGLPPG  269 (341)
T ss_pred             HHHh--cCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEecCCCC
Confidence            5542  467899999988766888999999999999999996543

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=1.5e-24  Score=172.18  Aligned_cols=191  Identities=40%  Similarity=0.676  Sum_probs=159.4

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-hh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-EP   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~   80 (216)
                      +|++++.|++||+|+..+...|++|++|+.    .|......+. ...|+|++|+.++.+.++++|+++++++++.+ .+
T Consensus        44 ~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~  118 (271)
T cd05188          44 VGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCPGGGILGE-GLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEP  118 (271)
T ss_pred             ECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCCCCCEecc-ccCCcceEEEEechHHeEECCCCCCHHHhhHhcCH
Confidence            678888999999999999999999999997    6776665444 45799999999999999999999999998876 58


Q ss_pred             hHHHHHHHHHc-CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHH
Q 048013           81 LSVGVHACRRA-NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE  159 (216)
Q Consensus        81 ~~~a~~~l~~~-~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (216)
                      +.++|++++.. .++++++++|+|+|++|++++++++..|.+ |+++++++++.+.+++++.+.+++..  ..+..+.+.
T Consensus       119 ~~~a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~  195 (271)
T cd05188         119 LATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGAR-VIVTDRSDEKLELAKELGADHVIDYK--EEDLEEELR  195 (271)
T ss_pred             HHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEEcCCHHHHHHHHHhCCceeccCC--cCCHHHHHH
Confidence            89999998654 458999999999866999999999999974 89999999998999889887766532  234444343


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                         ...+.++|+++++++.....+..+++++++|+++.+|....
T Consensus       196 ---~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~  236 (271)
T cd05188         196 ---LTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSG  236 (271)
T ss_pred             ---HhcCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccCCC
Confidence               23567899999999986677889999999999999996554

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.94  E-value=1.4e-24  Score=182.95  Aligned_cols=199  Identities=24%  Similarity=0.365  Sum_probs=150.3

Q ss_pred             CCCCCCC-CCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCC----ceEECCCCCCchhh
Q 048013            1 KVGSEVK-TLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD----LCFKLPDNVSLEEG   75 (216)
Q Consensus         1 ~vG~~v~-~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~ip~~~~~~~a   75 (216)
                      ++|++|+ .|++||||++.+...|++|..|..           ++. ..+|+|+||+.+|++    .++++|++++++++
T Consensus        76 ~vG~~v~~~~~vGdrV~~~~~~~c~~~~~c~~-----------~g~-~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~a  143 (410)
T cd08238          76 KVGKKWQGKYKPGQRFVIQPALILPDGPSCPG-----------YSY-TYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEA  143 (410)
T ss_pred             EeCCCccCCCCCCCEEEEcCCcCCCCCCCCCC-----------ccc-cCCCcceEEEEecHHhccCCeEECCCCCCHHHH
Confidence            4788998 699999999998889998887731           121 246999999999987    68999999999999


Q ss_pred             hcchhhHHH---HHHH---------HHcCCCCCCEEEEEc-CCHHHHHHHHHHHHcCC--CeEEEEcCChHHHHHHHHc-
Q 048013           76 AMCEPLSVG---VHAC---------RRANIGPETNVLIMG-SGPIGLVTMLAARAFGA--PRIVIVDVDDYRLSVAKKL-  139 (216)
Q Consensus        76 a~~~~~~~a---~~~l---------~~~~~~~~~~vlv~G-ag~~G~~~i~~a~~~g~--~~vv~~~~~~~~~~~~~~~-  139 (216)
                      +++.+++++   ++++         +..+++++++|+|+| +|++|++++|+|+.+|+  .+|++++.++++++.++++ 
T Consensus       144 al~epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~  223 (410)
T cd08238         144 SLVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLF  223 (410)
T ss_pred             hhcchHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhc
Confidence            877665544   3332         345688999999998 59999999999999754  4599999999999999886 


Q ss_pred             -------CCC-EEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEecc-CCC--CCccc
Q 048013          140 -------GAD-NIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM-GHR--EMTVP  208 (216)
Q Consensus       140 -------g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~-~~~--~~~~~  208 (216)
                             |++ .++++. ...++.+.++++  +.+.++|++||++|....+..++++++++|+++.++. ...  ..+++
T Consensus       224 ~~~~~~~Ga~~~~i~~~-~~~~~~~~v~~~--t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g~~~~~~~~~~~  300 (410)
T cd08238         224 PPEAASRGIELLYVNPA-TIDDLHATLMEL--TGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAGPVDKNFSAPLN  300 (410)
T ss_pred             cccccccCceEEEECCC-ccccHHHHHHHH--hCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEccCCCCcccccc
Confidence                   555 344432 123555556555  3567899999999987888999999999998877653 222  24555


Q ss_pred             chhhhh
Q 048013          209 LTPAAA  214 (216)
Q Consensus       209 ~~~~~~  214 (216)
                      +..+++
T Consensus       301 ~~~~~~  306 (410)
T cd08238         301 FYNVHY  306 (410)
T ss_pred             HHHhhh
Confidence            554443

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.94  E-value=2.2e-24  Score=176.76  Aligned_cols=194  Identities=40%  Similarity=0.665  Sum_probs=164.1

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchhh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL   81 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~   81 (216)
                      +|++++.+++||+|+..+...|++|..|..++.++|.....++. +..|+|++|+.++.+.++++|+++++.+++.+.++
T Consensus        67 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~~~~  145 (334)
T cd08234          67 VGSKVTGFKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGV-TRNGGFAEYVVVPAKQVYKIPDNLSFEEAALAEPL  145 (334)
T ss_pred             eCCCCCCCCCCCEEEEcCCcCCCCCccccCcChhhCCCcceecc-CCCCcceeEEEecHHHcEECcCCCCHHHHhhhhHH
Confidence            68888889999999999889999999999999999988766544 35699999999999999999999999888866677


Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHH
Q 048013           82 SVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKI  161 (216)
Q Consensus        82 ~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  161 (216)
                      .+++++++..+++++++++|+|+|.+|.+++++|+.+|+++++++++++++.+.+++++.+.+++++.  .+..+.  ..
T Consensus       146 ~~a~~~l~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~--~~  221 (334)
T cd08234         146 SCAVHGLDLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSR--EDPEAQ--KE  221 (334)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCC--CCHHHH--HH
Confidence            78888887788899999999988999999999999999965788888999999988899887666432  233222  22


Q ss_pred             HHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          162 QKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                        ..++++|+++|+++........+++++++|+++.+|...
T Consensus       222 --~~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~  260 (334)
T cd08234         222 --DNPYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFGVYA  260 (334)
T ss_pred             --hcCCCCcEEEECCCChHHHHHHHHHHhcCCEEEEEecCC
Confidence              346789999999987677889999999999999998644

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.94  E-value=3.3e-25  Score=180.09  Aligned_cols=176  Identities=20%  Similarity=0.274  Sum_probs=134.5

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEP   80 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~   80 (216)
                      ++|+++ .|++||||++.+    ..|..|..               ...|+|+||+.+|++.++++|++++++. +.+++
T Consensus        72 ~vG~~v-~~~vGdrV~~~~----~~c~~~~~---------------~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~~~  130 (308)
T TIGR01202        72 EAGPDT-GFRPGDRVFVPG----SNCYEDVR---------------GLFGGASKRLVTPASRVCRLDPALGPQG-ALLAL  130 (308)
T ss_pred             EecCCC-CCCCCCEEEEeC----cccccccc---------------ccCCcccceEEcCHHHceeCCCCCCHHH-HhhhH
Confidence            367887 599999998742    23333211               1359999999999999999999998764 55567


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  160 (216)
                      ++++|++++.. ..++++++|+|+|++|++++|+|+.+|++.|++++.++++++.++++   .++++.+   .       
T Consensus       131 ~~~a~~~~~~~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~i~~~~---~-------  196 (308)
T TIGR01202       131 AATARHAVAGA-EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EVLDPEK---D-------  196 (308)
T ss_pred             HHHHHHHHHhc-ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---cccChhh---c-------
Confidence            78999999664 34688999999999999999999999998677788888777766543   2222110   0       


Q ss_pred             HHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhhc
Q 048013          161 IQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAS  215 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~  215 (216)
                          .+.++|++||++|++..+..++++++++|+++++|+.....++++..++.|
T Consensus       197 ----~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~  247 (308)
T TIGR01202       197 ----PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTEPVNFDFVPAFMK  247 (308)
T ss_pred             ----cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecCCCcccccchhhhc
Confidence                245799999999997778999999999999999998665566666665543

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.93  E-value=3.9e-24  Score=178.30  Aligned_cols=196  Identities=30%  Similarity=0.511  Sum_probs=158.5

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCC---------CCCCCCCCccceeEEecCC--ceEECCCC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKG---------LGSPPVHGCLANQVVHPAD--LCFKLPDN   69 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~~~~--~~~~ip~~   69 (216)
                      ++|++++.+++||+|+..+..+|+.|..|..++.++|.+...         .+....+|+|++|+.+|..  .++++|++
T Consensus        67 ~vG~~v~~~~~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~lP~~  146 (375)
T cd08282          67 EVGSAVESLKVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDR  146 (375)
T ss_pred             EeCCCCCcCCCCCEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEECCCC
Confidence            368888889999999999999999999999999999975311         1111346899999999976  89999999


Q ss_pred             CCchh---hh-cchhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEE
Q 048013           70 VSLEE---GA-MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIV  145 (216)
Q Consensus        70 ~~~~~---aa-~~~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~  145 (216)
                      +++++   ++ +..++.++|++++...++++++|+|.|+|++|++++++++.+|+..++++++++++.+.++++|+. .+
T Consensus       147 ~~~~~~~~~a~~~~~~~ta~~a~~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~-~v  225 (375)
T cd08282         147 DGAKEKDDYLMLSDIFPTGWHGLELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAI-PI  225 (375)
T ss_pred             CChhhhhheeeecchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCe-Ee
Confidence            99884   34 345788999999778889999999998899999999999999985588899999999999999984 34


Q ss_pred             eCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHH-----------HHHHHHHHhhcCCEEEEeccCC
Q 048013          146 KVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK-----------TMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~-----------~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      ++  .++++.+.+.++.   ++++|+++|++|...           .+..++++++++|+++.+|...
T Consensus       226 ~~--~~~~~~~~i~~~~---~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~~  288 (375)
T cd08282         226 DF--SDGDPVEQILGLE---PGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVYV  288 (375)
T ss_pred             cc--CcccHHHHHHHhh---CCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEeccC
Confidence            43  2345555555542   357999999999742           4788899999999999888643

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=99.93  E-value=5.7e-25  Score=169.71  Aligned_cols=182  Identities=20%  Similarity=0.276  Sum_probs=145.3

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-   79 (216)
                      ++|+++++|++||+|++..                           ...|+|++|.+.+++.++++++.++.+.||.+. 
T Consensus        91 ~vGs~vkgfk~Gd~VIp~~---------------------------a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~V  143 (354)
T KOG0025|consen   91 AVGSNVKGFKPGDWVIPLS---------------------------ANLGTWRTEAVFSESDLIKVDKDIPLASAATLSV  143 (354)
T ss_pred             EecCCcCccCCCCeEeecC---------------------------CCCccceeeEeecccceEEcCCcCChhhhheecc
Confidence            4789999999999999863                           245999999999999999999999999999765 


Q ss_pred             hhHHHHHHHH-HcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHH----HHHHHHcCCCEEEeCCCCccc
Q 048013           80 PLSVGVHACR-RANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYR----LSVAKKLGADNIVKVSTNLQD  153 (216)
Q Consensus        80 ~~~~a~~~l~-~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~  153 (216)
                      .-+|||+++. ..++.+|++|+-.|+ +++|+++||+|+++|++. +-+.|+...    .+.++.+|+++++...+   .
T Consensus       144 NP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gikt-invVRdR~~ieel~~~Lk~lGA~~ViTeee---l  219 (354)
T KOG0025|consen  144 NPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKT-INVVRDRPNIEELKKQLKSLGATEVITEEE---L  219 (354)
T ss_pred             CchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcce-EEEeecCccHHHHHHHHHHcCCceEecHHH---h
Confidence            4569999994 578999999999997 899999999999999974 444455433    34567799999986211   1


Q ss_pred             HHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEec-cCCCCCcccchhhhhc
Q 048013          154 IAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG-MGHREMTVPLTPAAAS  215 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g-~~~~~~~~~~~~~~~~  215 (216)
                      -.+...... -....+.+.|+|+|+ .......+.|..+|.++.+| |+.+++++++.++|||
T Consensus       220 ~~~~~~k~~-~~~~~prLalNcVGG-ksa~~iar~L~~GgtmvTYGGMSkqPv~~~ts~lIFK  280 (354)
T KOG0025|consen  220 RDRKMKKFK-GDNPRPRLALNCVGG-KSATEIARYLERGGTMVTYGGMSKQPVTVPTSLLIFK  280 (354)
T ss_pred             cchhhhhhh-ccCCCceEEEeccCc-hhHHHHHHHHhcCceEEEecCccCCCcccccchheec
Confidence            111111111 134578999999999 66678999999999999997 7777899999999987

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.93  E-value=1.6e-24  Score=177.60  Aligned_cols=188  Identities=30%  Similarity=0.499  Sum_probs=157.9

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-h
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-P   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~   80 (216)
                      +|++++.+++||+|+..+..+|++|.+|..+++++|+....++. +..|+|++|+.++...++++|+++++.+++.+. .
T Consensus        69 ~g~~~~~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~  147 (334)
T PRK13771         69 VGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGE-ELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCV  147 (334)
T ss_pred             eCCCCccCCCCCEEEECCCCCCcCChhhcCCCcccCcccccccc-ccCceeeeeeecchhceEECCCCCCHHHhhcccch
Confidence            57788889999999998888999999999999999998776664 457999999999999999999999998888655 7


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE  159 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (216)
                      +.++|++++...+.++++++|+|+ |.+|++++++++..|++ ++++++++++.+.++++ ++.+++.+    ++.+.++
T Consensus       148 ~~~a~~~~~~~~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~-vi~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~v~  221 (334)
T PRK13771        148 TGMVYRGLRRAGVKKGETVLVTGAGGGVGIHAIQVAKALGAK-VIAVTSSESKAKIVSKY-ADYVIVGS----KFSEEVK  221 (334)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHH-HHHhcCch----hHHHHHH
Confidence            788999986558899999999997 99999999999999995 88888888888888887 55444321    3333333


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +    .+ ++|+++|++|+ ......+++++++|+++.+|...
T Consensus       222 ~----~~-~~d~~ld~~g~-~~~~~~~~~l~~~G~~v~~g~~~  258 (334)
T PRK13771        222 K----IG-GADIVIETVGT-PTLEESLRSLNMGGKIIQIGNVD  258 (334)
T ss_pred             h----cC-CCcEEEEcCCh-HHHHHHHHHHhcCCEEEEEeccC
Confidence            3    23 69999999998 56789999999999999999644

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.93  E-value=7.7e-24  Score=173.38  Aligned_cols=195  Identities=34%  Similarity=0.585  Sum_probs=162.3

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-h
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-P   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~   80 (216)
                      +|++++.+++||+|++.+..+|++|.+|..+.+++|.+...+|. ...|+|++|+.++.+.++++|+++++++++.+. .
T Consensus        72 ~G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~  150 (342)
T cd08266          72 VGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGE-HVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLT  150 (342)
T ss_pred             eCCCCCCCCCCCEEEEccccccccchhhcccccccccccccccc-ccCcceeEEEEechHHceeCCCCCCHHHHHhhhhH
Confidence            67888889999999999999999999999999999998766655 356899999999999999999999998888654 6


Q ss_pred             hHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           81 LSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        81 ~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      +.++++++ +...+.++++++|+|+ +++|++++++++..|++ ++.+++++++.+.++.++.+.+++.  ...+..+.+
T Consensus       151 ~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  227 (342)
T cd08266         151 FLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGAT-VIATAGSEDKLERAKELGADYVIDY--RKEDFVREV  227 (342)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHcCCCeEEec--CChHHHHHH
Confidence            77888887 5678899999999997 69999999999999996 8888888888888888887665543  223444444


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      .+.  ..+.++|++++++|. ..+...+++++++|+++.+|....
T Consensus       228 ~~~--~~~~~~d~~i~~~g~-~~~~~~~~~l~~~G~~v~~~~~~~  269 (342)
T cd08266         228 REL--TGKRGVDVVVEHVGA-ATWEKSLKSLARGGRLVTCGATTG  269 (342)
T ss_pred             HHH--hCCCCCcEEEECCcH-HHHHHHHHHhhcCCEEEEEecCCC
Confidence            433  235679999999998 677889999999999999986543

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.93  E-value=6.8e-24  Score=173.63  Aligned_cols=184  Identities=27%  Similarity=0.408  Sum_probs=158.6

Q ss_pred             CCCCCCCCCCCCEEEEcCC-cCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-h
Q 048013            2 VGSEVKTLVPGDRVALEPG-ISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-E   79 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~-~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~   79 (216)
                      +|+++..+++||+|++.+. .+|++|..|+.+++++|....+++. ..+|+|++|+.++.+.++++|+++++.+++.+ .
T Consensus        73 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~  151 (329)
T cd08298          73 VGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGY-TVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLC  151 (329)
T ss_pred             ECCCCCCCcCCCEEEEeccCCCCCCChhHhCcChhhCCCcccccc-ccCCceEEEEEecchhEEECCCCCCHHHhhHhhh
Confidence            6788888999999987654 6899999999999999998877666 34699999999999999999999999888844 5


Q ss_pred             hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHH
Q 048013           80 PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE  159 (216)
Q Consensus        80 ~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (216)
                      ++.++|++++..+++++++++|+|+|++|++++++++..|++ +++++.++++++.++++|++..++....         
T Consensus       152 ~~~ta~~~~~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~-v~~~~~~~~~~~~~~~~g~~~~~~~~~~---------  221 (329)
T cd08298         152 AGIIGYRALKLAGLKPGQRLGLYGFGASAHLALQIARYQGAE-VFAFTRSGEHQELARELGADWAGDSDDL---------  221 (329)
T ss_pred             hhHHHHHHHHhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCe-EEEEcCChHHHHHHHHhCCcEEeccCcc---------
Confidence            788999999888899999999999999999999999999985 8888888899999999998776653211         


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccC
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                           .++++|+++++.+....++.++++++++|+++.+|..
T Consensus       222 -----~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~  258 (329)
T cd08298         222 -----PPEPLDAAIIFAPVGALVPAALRAVKKGGRVVLAGIH  258 (329)
T ss_pred             -----CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEEEEcCC
Confidence                 2457999999887767889999999999999999854

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.92  E-value=1.8e-23  Score=170.99  Aligned_cols=189  Identities=37%  Similarity=0.614  Sum_probs=158.8

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-hh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-EP   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~   80 (216)
                      +|++++.+++||+|+..+...|++|.+|..++.++|.+...+|. +..|+|++|+.++...++++|+++++++++.+ .+
T Consensus        69 ~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~  147 (332)
T cd08259          69 VGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGE-EVDGGFAEYVKVPERSLVKLPDNVSDESAALAACV  147 (332)
T ss_pred             ECCCCccCCCCCEEEECCCCCCcCChhhhCCCcccCCCcccccc-ccCCeeeeEEEechhheEECCCCCCHHHHhhhccH
Confidence            57888889999999999889999999999999999998655553 45799999999999999999999999888855 47


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE  159 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (216)
                      +.++|++++...+.++++++|+|+ |++|+++++.++..|.+ ++++.+++++.+.+++++.+.+++.+    ++.+.+.
T Consensus       148 ~~ta~~~l~~~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  222 (332)
T cd08259         148 VGTAVHALKRAGVKKGDTVLVTGAGGGVGIHAIQLAKALGAR-VIAVTRSPEKLKILKELGADYVIDGS----KFSEDVK  222 (332)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCe-EEEEeCCHHHHHHHHHcCCcEEEecH----HHHHHHH
Confidence            789999986678899999999996 99999999999999996 88888888888888888887665432    1333343


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +.    . ++|++++++|. .....+++.++++|+++.+|...
T Consensus       223 ~~----~-~~d~v~~~~g~-~~~~~~~~~~~~~g~~v~~g~~~  259 (332)
T cd08259         223 KL----G-GADVVIELVGS-PTIEESLRSLNKGGRLVLIGNVT  259 (332)
T ss_pred             hc----c-CCCEEEECCCh-HHHHHHHHHhhcCCEEEEEcCCC
Confidence            32    2 79999999998 55788999999999999998543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.92  E-value=2e-23  Score=170.92  Aligned_cols=189  Identities=30%  Similarity=0.429  Sum_probs=158.2

Q ss_pred             CCCCCCCCCCCCEEEEcCC-cCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-h
Q 048013            2 VGSEVKTLVPGDRVALEPG-ISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-E   79 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~-~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~   79 (216)
                      +|++++.+++||+|++.+. ..|++|++|+.+..++|++...++. ...|+|++|+.++++.++++|+++++.+++.+ .
T Consensus        68 ~g~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~  146 (330)
T cd08245          68 VGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGY-TTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLC  146 (330)
T ss_pred             ECCCCcccccCCEEEEccccCCCCCChhhhCcCcccCcCccccCc-ccCCccccEEEEcHHHeEECCCCCCHHHhhhhhh
Confidence            5788888999999988654 5799999999999999998766554 34689999999999999999999999988854 4


Q ss_pred             hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHH
Q 048013           80 PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE  159 (216)
Q Consensus        80 ~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (216)
                      .+.++|++++..+++++++++|+|+|++|++++++|+.+|++ |+++++++++.+.++++|.+.+++...  .+..+   
T Consensus       147 ~~~ta~~~l~~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~-v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~---  220 (330)
T cd08245         147 AGITVYSALRDAGPRPGERVAVLGIGGLGHLAVQYARAMGFE-TVAITRSPDKRELARKLGADEVVDSGA--ELDEQ---  220 (330)
T ss_pred             hHHHHHHHHHhhCCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHhCCcEEeccCC--cchHH---
Confidence            667899998667889999999999888999999999999995 889899999999998899887765322  12111   


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccC
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      .    ..+++|+++++++.......++++++++|+++.+|..
T Consensus       221 ~----~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~~~  258 (330)
T cd08245         221 A----AAGGADVILVTVVSGAAAEAALGGLRRGGRIVLVGLP  258 (330)
T ss_pred             h----ccCCCCEEEECCCcHHHHHHHHHhcccCCEEEEECCC
Confidence            1    1247999999988767788999999999999999854

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.92  E-value=1.9e-23  Score=172.50  Aligned_cols=164  Identities=20%  Similarity=0.256  Sum_probs=134.8

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCc--eEE--CCCCCCch-hhh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADL--CFK--LPDNVSLE-EGA   76 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~--ip~~~~~~-~aa   76 (216)
                      +|++++.|++||+|+..                               |+|+||+.++...  +++  +|++++++ +++
T Consensus        89 vg~~v~~~~~Gd~V~~~-------------------------------~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa  137 (348)
T PLN03154         89 VDSDDPNFKPGDLISGI-------------------------------TGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLG  137 (348)
T ss_pred             EecCCCCCCCCCEEEec-------------------------------CCcEEEEEEeccccceEEccCcCCCCHHHHHH
Confidence            67888899999999753                               6899999999754  544  48999886 555


Q ss_pred             cc-hhhHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-HcCCCEEEeCCCCcc
Q 048013           77 MC-EPLSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KLGADNIVKVSTNLQ  152 (216)
Q Consensus        77 ~~-~~~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~g~~~~~~~~~~~~  152 (216)
                      .+ .++.|+|+++ +...++++++|||+|+ |++|++++|+|+.+|++ |+++++++++.+.++ ++|++.++++++ ..
T Consensus       138 ~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~-Vi~~~~~~~k~~~~~~~lGa~~vi~~~~-~~  215 (348)
T PLN03154        138 LLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCY-VVGSAGSSQKVDLLKNKLGFDEAFNYKE-EP  215 (348)
T ss_pred             HcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHhcCCCEEEECCC-cc
Confidence            44 4788999998 5578999999999997 99999999999999995 888889999999887 799999888642 12


Q ss_pred             cHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          153 DIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       153 ~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      ++.+.++++   .++++|++||++|+ ..+..++++++++|+++++|...
T Consensus       216 ~~~~~i~~~---~~~gvD~v~d~vG~-~~~~~~~~~l~~~G~iv~~G~~~  261 (348)
T PLN03154        216 DLDAALKRY---FPEGIDIYFDNVGG-DMLDAALLNMKIHGRIAVCGMVS  261 (348)
T ss_pred             cHHHHHHHH---CCCCcEEEEECCCH-HHHHHHHHHhccCCEEEEECccc
Confidence            555555554   34689999999998 67899999999999999999754

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.92  E-value=3.9e-23  Score=169.92  Aligned_cols=164  Identities=20%  Similarity=0.215  Sum_probs=135.6

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecC-CceEECC-CCCCch-hhh-c
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA-DLCFKLP-DNVSLE-EGA-M   77 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~ip-~~~~~~-~aa-~   77 (216)
                      +|+.++.|++||+|+..                               |+|+||+.+|+ ..++++| ++++++ +++ +
T Consensus        84 v~~~v~~~~vGd~V~~~-------------------------------g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l  132 (338)
T cd08295          84 VDSGNPDFKVGDLVWGF-------------------------------TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLL  132 (338)
T ss_pred             EecCCCCCCCCCEEEec-------------------------------CCceeEEEecchhceeecCCCCCCHHHHHHhc
Confidence            46677789999999753                               68999999999 8999995 567765 455 4


Q ss_pred             chhhHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-cCCCEEEeCCCCcccH
Q 048013           78 CEPLSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-LGADNIVKVSTNLQDI  154 (216)
Q Consensus        78 ~~~~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~  154 (216)
                      ..++.|+|+++ +..++++|++++|+|+ |++|++++|+|+.+|++ |+++++++++.+++++ +|++.++++.+ ..++
T Consensus       133 ~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~-Vi~~~~~~~~~~~~~~~lGa~~vi~~~~-~~~~  210 (338)
T cd08295         133 GMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCY-VVGSAGSDEKVDLLKNKLGFDDAFNYKE-EPDL  210 (338)
T ss_pred             ccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhcCCceeEEcCC-cccH
Confidence            45788999998 5678999999999996 99999999999999995 8888889999999988 99998877532 2355


Q ss_pred             HHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          155 AEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       155 ~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      .+.+++.   .++++|++||++|+ ..+..++++++++|+++.+|...
T Consensus       211 ~~~i~~~---~~~gvd~v~d~~g~-~~~~~~~~~l~~~G~iv~~G~~~  254 (338)
T cd08295         211 DAALKRY---FPNGIDIYFDNVGG-KMLDAVLLNMNLHGRIAACGMIS  254 (338)
T ss_pred             HHHHHHh---CCCCcEEEEECCCH-HHHHHHHHHhccCcEEEEecccc
Confidence            5555554   34689999999998 77899999999999999999644

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.91  E-value=6.9e-23  Score=168.93  Aligned_cols=192  Identities=26%  Similarity=0.310  Sum_probs=149.2

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-hh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-EP   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~   80 (216)
                      +|++++.|++||+|+..+..+|++|..|...        ..++. ..+|+|++|+.++.+.++++|+++++.+++.+ .+
T Consensus        92 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~--------~~~~~-~~~g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~  162 (350)
T cd08274          92 VGEGVDTARIGERVLVDPSIRDPPEDDPADI--------DYIGS-ERDGGFAEYTVVPAENAYPVNSPLSDVELATFPCS  162 (350)
T ss_pred             eCCCCCCCCCCCEEEEecCcCCCCccccccc--------cccCC-CCCccceEEEEecHHHceeCCCCCCHHHHHhcccH
Confidence            6888889999999999888888887664321        11221 23589999999999999999999999887754 47


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE  159 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (216)
                      +.++|++++...++++++++|+|+ |++|++++++|+.+|++ +++++.++ +.+.++++|++.+.+.  ....+.+  .
T Consensus       163 ~~ta~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~-vi~~~~~~-~~~~~~~~g~~~~~~~--~~~~~~~--~  236 (350)
T cd08274         163 YSTAENMLERAGVGAGETVLVTGASGGVGSALVQLAKRRGAI-VIAVAGAA-KEEAVRALGADTVILR--DAPLLAD--A  236 (350)
T ss_pred             HHHHHHHHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCE-EEEEeCch-hhHHHHhcCCeEEEeC--CCccHHH--H
Confidence            888999987788999999999997 99999999999999996 77776655 7788888998654432  2223332  2


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCC-Ccccchh
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHRE-MTVPLTP  211 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~  211 (216)
                      ..  +.++++|++||++++ ..+..++++++++|+++.+|..... .++++..
T Consensus       237 ~~--~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  286 (350)
T cd08274         237 KA--LGGEPVDVVADVVGG-PLFPDLLRLLRPGGRYVTAGAIAGPVVELDLRT  286 (350)
T ss_pred             Hh--hCCCCCcEEEecCCH-HHHHHHHHHhccCCEEEEecccCCccccCCHHH
Confidence            22  356789999999998 6788999999999999999854433 3455444

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.91  E-value=4.5e-23  Score=169.84  Aligned_cols=164  Identities=22%  Similarity=0.284  Sum_probs=134.4

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchh-----h
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEE-----G   75 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~-----a   75 (216)
                      ++|++|+.|++||+|+..                              .++|+||+.+|++.++++|+++++.+     +
T Consensus        82 ~vG~~v~~~~~Gd~V~~~------------------------------~~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a  131 (345)
T cd08293          82 VEESKHQKFAVGDIVTSF------------------------------NWPWQTYAVLDGSSLEKVDPQLVDGHLSYFLG  131 (345)
T ss_pred             EeccCCCCCCCCCEEEec------------------------------CCCceeEEEecHHHeEEcCccccccchhHHhh
Confidence            368899999999999853                              15799999999999999999854332     2


Q ss_pred             hcchhhHHHHHHH-HHcCCCCC--CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-cCCCEEEeCCCC
Q 048013           76 AMCEPLSVGVHAC-RRANIGPE--TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-LGADNIVKVSTN  150 (216)
Q Consensus        76 a~~~~~~~a~~~l-~~~~~~~~--~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~g~~~~~~~~~~  150 (216)
                      +...++.++|+++ +..+++++  ++|||+|+ |++|++++|+|+.+|+.+|+++++++++.+.+++ +|++.++++.+ 
T Consensus       132 ~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~-  210 (345)
T cd08293         132 AVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKT-  210 (345)
T ss_pred             hcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC-
Confidence            3444788999998 55667776  99999996 9999999999999998458889899999888866 99998887543 


Q ss_pred             cccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEecc
Q 048013          151 LQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                       .++.+.++++   .++++|++||++|+ ..+..++++|+++|+++.+|.
T Consensus       211 -~~~~~~i~~~---~~~gvd~vid~~g~-~~~~~~~~~l~~~G~iv~~G~  255 (345)
T cd08293         211 -DNVAERLREL---CPEGVDVYFDNVGG-EISDTVISQMNENSHIILCGQ  255 (345)
T ss_pred             -CCHHHHHHHH---CCCCceEEEECCCc-HHHHHHHHHhccCCEEEEEee
Confidence             4666666665   34689999999998 557899999999999999984

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.91  E-value=1.5e-22  Score=165.20  Aligned_cols=167  Identities=28%  Similarity=0.337  Sum_probs=139.5

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-   79 (216)
                      ++|++|+.+++||+|+..+                            ..|+|++|+.+++..++++|+++++++++.+. 
T Consensus        72 ~~G~~v~~~~~Gd~V~~~~----------------------------~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~  123 (324)
T cd08292          72 AVGEGVKGLQVGQRVAVAP----------------------------VHGTWAEYFVAPADGLVPLPDGISDEVAAQLIA  123 (324)
T ss_pred             EeCCCCCCCCCCCEEEecc----------------------------CCCcceeEEEEchHHeEECCCCCCHHHhhhccc
Confidence            3688888999999998751                            25899999999999999999999999888654 


Q ss_pred             hhHHHHHHHHHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           80 PLSVGVHACRRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        80 ~~~~a~~~l~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      ...++|++++...++++++++|+|+ |.+|++++++|+.+|++ ++++..++++.+.++++|.+.+++.  ...++.+.+
T Consensus       124 ~~~ta~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~-v~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~i  200 (324)
T cd08292         124 MPLSALMLLDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGIN-VINLVRRDAGVAELRALGIGPVVST--EQPGWQDKV  200 (324)
T ss_pred             cHHHHHHHHHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCe-EEEEecCHHHHHHHHhcCCCEEEcC--CCchHHHHH
Confidence            5567888887788999999999986 99999999999999996 7777777888888888898877664  334555566


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccC
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      .++  +.++++|++||++|+ .....++++++++|+++.+|..
T Consensus       201 ~~~--~~~~~~d~v~d~~g~-~~~~~~~~~l~~~g~~v~~g~~  240 (324)
T cd08292         201 REA--AGGAPISVALDSVGG-KLAGELLSLLGEGGTLVSFGSM  240 (324)
T ss_pred             HHH--hCCCCCcEEEECCCC-hhHHHHHHhhcCCcEEEEEecC
Confidence            655  356789999999999 5678899999999999999964

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.90  E-value=4.1e-22  Score=162.98  Aligned_cols=168  Identities=21%  Similarity=0.286  Sum_probs=134.2

Q ss_pred             CCCCCCCC-CCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-
Q 048013            1 KVGSEVKT-LVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-   78 (216)
Q Consensus         1 ~vG~~v~~-~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-   78 (216)
                      ++|++++. |++||+|+..+                           ..+|+|+||+.+|++.++++|+++++++++.+ 
T Consensus        74 ~vG~~v~~~~~vGd~V~~~~---------------------------~~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~  126 (324)
T cd08291          74 AAGGGPLAQSLIGKRVAFLA---------------------------GSYGTYAEYAVADAQQCLPLPDGVSFEQGASSF  126 (324)
T ss_pred             EECCCccccCCCCCEEEecC---------------------------CCCCcchheeeecHHHeEECCCCCCHHHHhhhc
Confidence            36888885 99999998741                           01489999999999999999999999988743 


Q ss_pred             hhhHHHHHHHHHcCCCCCCEEEEE-c-CCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHH
Q 048013           79 EPLSVGVHACRRANIGPETNVLIM-G-SGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAE  156 (216)
Q Consensus        79 ~~~~~a~~~l~~~~~~~~~~vlv~-G-ag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  156 (216)
                      ....++|.+++.... +++.++|+ | +|++|++++|+|+.+|++ ++++++++++.+.++++|++.+++++  ..++.+
T Consensus       127 ~~~~ta~~~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~~-vi~~~~~~~~~~~~~~~g~~~~i~~~--~~~~~~  202 (324)
T cd08291         127 VNPLTALGMLETARE-EGAKAVVHTAAASALGRMLVRLCKADGIK-VINIVRRKEQVDLLKKIGAEYVLNSS--DPDFLE  202 (324)
T ss_pred             ccHHHHHHHHHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHcCCcEEEECC--CccHHH
Confidence            355577766655555 45556555 4 699999999999999995 88899999999999999999888754  346666


Q ss_pred             HHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          157 EVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       157 ~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      .++++.  .++++|++||++|+ ......+++++++|+++.+|...
T Consensus       203 ~v~~~~--~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~  245 (324)
T cd08291         203 DLKELI--AKLNATIFFDAVGG-GLTGQILLAMPYGSTLYVYGYLS  245 (324)
T ss_pred             HHHHHh--CCCCCcEEEECCCc-HHHHHHHHhhCCCCEEEEEEecC
Confidence            666653  45689999999998 55677899999999999999643

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.90  E-value=9.1e-22  Score=160.91  Aligned_cols=158  Identities=22%  Similarity=0.270  Sum_probs=132.2

Q ss_pred             CCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCC---ceEECCCCCC------chhh
Q 048013            5 EVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD---LCFKLPDNVS------LEEG   75 (216)
Q Consensus         5 ~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~ip~~~~------~~~a   75 (216)
                      .++.|++||||+..                               ++|++|+.++..   .++++|++++      ...+
T Consensus        74 ~~~~~~~Gd~V~~~-------------------------------~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a  122 (329)
T cd08294          74 KNSKFPVGTIVVAS-------------------------------FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALG  122 (329)
T ss_pred             CCCCCCCCCEEEee-------------------------------CCeeeEEEECCccccceEECCccccccCChHHHHH
Confidence            34578999999853                               578999999999   9999999987      2223


Q ss_pred             hcchhhHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCccc
Q 048013           76 AMCEPLSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQD  153 (216)
Q Consensus        76 a~~~~~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  153 (216)
                      ++..++.|+|+++ +..++++++++||+|+ |++|++++|+|+.+|++ |+++++++++.+.++++|++.++++.  .++
T Consensus       123 ~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~-vi~~~~s~~~~~~l~~~Ga~~vi~~~--~~~  199 (329)
T cd08294         123 VLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCK-VIGCAGSDDKVAWLKELGFDAVFNYK--TVS  199 (329)
T ss_pred             hcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHcCCCEEEeCC--Ccc
Confidence            3445788999998 6688999999999985 99999999999999995 88898999999999999999888753  346


Q ss_pred             HHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEecc
Q 048013          154 IAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      +.+.++++   .++++|++||++|+ ..+...+++++++|+++.+|.
T Consensus       200 ~~~~v~~~---~~~gvd~vld~~g~-~~~~~~~~~l~~~G~iv~~g~  242 (329)
T cd08294         200 LEEALKEA---APDGIDCYFDNVGG-EFSSTVLSHMNDFGRVAVCGS  242 (329)
T ss_pred             HHHHHHHH---CCCCcEEEEECCCH-HHHHHHHHhhccCCEEEEEcc
Confidence            65555554   35689999999998 778999999999999999985

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.90  E-value=4.9e-22  Score=154.76  Aligned_cols=161  Identities=18%  Similarity=0.191  Sum_probs=138.6

Q ss_pred             CCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCC---Cchhhhcchhh
Q 048013            5 EVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNV---SLEEGAMCEPL   81 (216)
Q Consensus         5 ~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~---~~~~aa~~~~~   81 (216)
                      ...+|++||.|+..                               .+|+||..++.+.+.+++++.   ++....+-+|.
T Consensus        87 ~~~~f~~GD~V~~~-------------------------------~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG  135 (340)
T COG2130          87 NHPGFQPGDIVVGV-------------------------------SGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPG  135 (340)
T ss_pred             CCCCCCCCCEEEec-------------------------------ccceEEEeechhhceecCCCCCCcchHHhhcCCch
Confidence            45579999999864                               699999999999999998654   33334444688


Q ss_pred             HHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-cCCCEEEeCCCCcccHHHHH
Q 048013           82 SVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-LGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        82 ~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~  158 (216)
                      .|||.+| +...+++|++++|.+| |++|..+.|+||..|++ ||.+...++|.+++++ +|.+.+++|+.  +++.+.+
T Consensus       136 ~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~r-VVGiaGg~eK~~~l~~~lGfD~~idyk~--~d~~~~L  212 (340)
T COG2130         136 LTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCR-VVGIAGGAEKCDFLTEELGFDAGIDYKA--EDFAQAL  212 (340)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCe-EEEecCCHHHHHHHHHhcCCceeeecCc--ccHHHHH
Confidence            8999998 6788999999999985 99999999999999995 9999999999999877 99999999865  4776666


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      .+.   .+.|+|+.||++|+ +.+.+++..|+..+|+..||+.++
T Consensus       213 ~~a---~P~GIDvyfeNVGg-~v~DAv~~~ln~~aRi~~CG~IS~  253 (340)
T COG2130         213 KEA---CPKGIDVYFENVGG-EVLDAVLPLLNLFARIPVCGAISQ  253 (340)
T ss_pred             HHH---CCCCeEEEEEcCCc-hHHHHHHHhhccccceeeeeehhh
Confidence            553   67899999999999 899999999999999999998665

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.89  E-value=9.7e-22  Score=160.81  Aligned_cols=146  Identities=21%  Similarity=0.245  Sum_probs=122.0

Q ss_pred             CccceeEEecCCceEEC----CCCCCchhh-hc-chhhHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCC
Q 048013           50 GCLANQVVHPADLCFKL----PDNVSLEEG-AM-CEPLSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAP  121 (216)
Q Consensus        50 g~~~~~~~~~~~~~~~i----p~~~~~~~a-a~-~~~~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~  121 (216)
                      ++|++|+.++...+.++    |++++++++ +. ..++.|+|+++ +..+++++++|||+|+ |++|++++|+|+..|++
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~  165 (325)
T TIGR02825        86 PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCK  165 (325)
T ss_pred             cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCE
Confidence            46999999999998887    889998886 43 35788999998 6678999999999995 99999999999999995


Q ss_pred             eEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccC
Q 048013          122 RIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       122 ~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                       |+++++++++.+.++++|++.++++++. .++.+.+...   .++++|++||++|+ ..+...+++++++|+++.+|..
T Consensus       166 -Vi~~~~s~~~~~~~~~lGa~~vi~~~~~-~~~~~~~~~~---~~~gvdvv~d~~G~-~~~~~~~~~l~~~G~iv~~G~~  239 (325)
T TIGR02825       166 -VVGAAGSDEKVAYLKKLGFDVAFNYKTV-KSLEETLKKA---SPDGYDCYFDNVGG-EFSNTVIGQMKKFGRIAICGAI  239 (325)
T ss_pred             -EEEEeCCHHHHHHHHHcCCCEEEecccc-ccHHHHHHHh---CCCCeEEEEECCCH-HHHHHHHHHhCcCcEEEEecch
Confidence             8888899999999999999988876431 2444444433   45689999999998 5678999999999999999964

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.89  E-value=2.9e-21  Score=156.66  Aligned_cols=166  Identities=31%  Similarity=0.466  Sum_probs=137.6

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-hh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-EP   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~   80 (216)
                      +|++++.+++||+|+..                             ..|+|++|+.++++.++++|+++  ..++.. .+
T Consensus        66 vG~~v~~~~~Gd~V~~~-----------------------------~~g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~  114 (312)
T cd08269          66 LGPGVRGLAVGDRVAGL-----------------------------SGGAFAEYDLADADHAVPLPSLL--DGQAFPGEP  114 (312)
T ss_pred             ECCCCcCCCCCCEEEEe-----------------------------cCCcceeeEEEchhheEECCCch--hhhHHhhhh
Confidence            68888889999999975                             34899999999999999999988  233333 57


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  160 (216)
                      +.+++++++..+++++++++|+|+|++|++++++|+.+|++.++++.+++++.++++++|.+.+++.  ...++.+.+.+
T Consensus       115 ~~~a~~~~~~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~l~~  192 (312)
T cd08269         115 LGCALNVFRRGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTD--DSEAIVERVRE  192 (312)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecC--CCcCHHHHHHH
Confidence            7888988887888999999999889999999999999999658888888888888899999776653  33456566665


Q ss_pred             HHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          161 IQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +.  .+.++|+++|++|........+++|+++|+++.+|...
T Consensus       193 ~~--~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g~~~  232 (312)
T cd08269         193 LT--GGAGADVVIEAVGHQWPLDLAGELVAERGRLVIFGYHQ  232 (312)
T ss_pred             Hc--CCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCC
Confidence            53  45789999999988677889999999999999998643

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.89  E-value=3.6e-21  Score=157.87  Aligned_cols=167  Identities=20%  Similarity=0.275  Sum_probs=137.5

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-   79 (216)
                      ++|++|+.|++||+|+....                         ....|+|++|+.++++.++++|+++++++++.++ 
T Consensus        72 ~vG~~v~~~~~Gd~V~~~~~-------------------------~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~  126 (336)
T TIGR02817        72 AVGDEVTLFKPGDEVWYAGD-------------------------IDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPL  126 (336)
T ss_pred             EeCCCCCCCCCCCEEEEcCC-------------------------CCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhH
Confidence            36888999999999986410                         0135899999999999999999999999988654 


Q ss_pred             hhHHHHHHH-HHcCCCC-----CCEEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCc
Q 048013           80 PLSVGVHAC-RRANIGP-----ETNVLIMGS-GPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNL  151 (216)
Q Consensus        80 ~~~~a~~~l-~~~~~~~-----~~~vlv~Ga-g~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~  151 (216)
                      ...++|.++ +..++++     +++++|+|+ |++|++++|+|+.+ |++ |++++.++++.+.++++|++.+++++   
T Consensus       127 ~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~~-vi~~~~~~~~~~~l~~~g~~~~~~~~---  202 (336)
T TIGR02817       127 TSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLT-VIATASRPESQEWVLELGAHHVIDHS---  202 (336)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCCE-EEEEcCcHHHHHHHHHcCCCEEEECC---
Confidence            677889988 5566766     999999985 99999999999998 995 88888888899999999998887643   


Q ss_pred             ccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEec
Q 048013          152 QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      .++.+.+++   ..++++|+++|++++.......+++++++|+++.++
T Consensus       203 ~~~~~~i~~---~~~~~vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~~  247 (336)
T TIGR02817       203 KPLKAQLEK---LGLEAVSYVFSLTHTDQHFKEIVELLAPQGRFALID  247 (336)
T ss_pred             CCHHHHHHH---hcCCCCCEEEEcCCcHHHHHHHHHHhccCCEEEEEc
Confidence            245555554   245689999999876677899999999999999886

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.88  E-value=6.6e-22  Score=161.80  Aligned_cols=147  Identities=32%  Similarity=0.529  Sum_probs=123.3

Q ss_pred             CCCCccceeEEecCCceEECCCCCCchhhhcch-hhHHHHHHH-HHc------CCCCCCEEEEEcC-CHHHHHHHHHHHH
Q 048013           47 PVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRA------NIGPETNVLIMGS-GPIGLVTMLAARA  117 (216)
Q Consensus        47 ~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~------~~~~~~~vlv~Ga-g~~G~~~i~~a~~  117 (216)
                      ...|+|+||+.+|+..++++|+++++.+++.++ +..+||.++ ...      +.+++++|||+|+ |++|++++|+|+.
T Consensus       101 ~~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~  180 (347)
T KOG1198|consen  101 LSSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKH  180 (347)
T ss_pred             cCCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHh
Confidence            356999999999999999999999999999776 777999999 556      6999999999985 8999999999999


Q ss_pred             cCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEE
Q 048013          118 FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCL  197 (216)
Q Consensus       118 ~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~  197 (216)
                      .|+. .+++.++++++++++++|++.+++|++  +++.+.+.+.   .+.+||+||||+|+ ........++..+|+...
T Consensus       181 ~~~~-~v~t~~s~e~~~l~k~lGAd~vvdy~~--~~~~e~~kk~---~~~~~DvVlD~vg~-~~~~~~~~~l~~~g~~~~  253 (347)
T KOG1198|consen  181 AGAI-KVVTACSKEKLELVKKLGADEVVDYKD--ENVVELIKKY---TGKGVDVVLDCVGG-STLTKSLSCLLKGGGGAY  253 (347)
T ss_pred             cCCc-EEEEEcccchHHHHHHcCCcEeecCCC--HHHHHHHHhh---cCCCccEEEECCCC-CccccchhhhccCCceEE
Confidence            9954 677778999999999999999999865  5666655553   37899999999999 466677777777775445


Q ss_pred             ecc
Q 048013          198 VGM  200 (216)
Q Consensus       198 ~g~  200 (216)
                      ++.
T Consensus       254 i~~  256 (347)
T KOG1198|consen  254 IGL  256 (347)
T ss_pred             EEe
Confidence            543

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.88  E-value=1e-20  Score=154.24  Aligned_cols=169  Identities=25%  Similarity=0.326  Sum_probs=138.6

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-hh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-EP   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~   80 (216)
                      +|++++.+++||+|+....                          ...|+|++|+.+++..++++|+++++++++.+ ..
T Consensus        74 ~G~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~  127 (324)
T cd08244          74 VGPGVDPAWLGRRVVAHTG--------------------------RAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHD  127 (324)
T ss_pred             eCCCCCCCCCCCEEEEccC--------------------------CCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcch
Confidence            5778888999999987521                          13589999999999999999999999988754 46


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE  159 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (216)
                      +.++|..++...++++++++|+|+ |++|++++++|+.+|++ ++++++++++.+.++++|++.+++..  ..++.+.+.
T Consensus       128 ~~ta~~~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~-v~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~  204 (324)
T cd08244         128 GRTALGLLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGAT-VVGAAGGPAKTALVRALGADVAVDYT--RPDWPDQVR  204 (324)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHcCCCEEEecC--CccHHHHHH
Confidence            677766667788899999999995 99999999999999995 88998899998989999987766642  345555555


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +.  ..++++|+++|++|+ ...+..+++++++|+++.+|...
T Consensus       205 ~~--~~~~~~d~vl~~~g~-~~~~~~~~~l~~~g~~v~~g~~~  244 (324)
T cd08244         205 EA--LGGGGVTVVLDGVGG-AIGRAALALLAPGGRFLTYGWAS  244 (324)
T ss_pred             HH--cCCCCceEEEECCCh-HhHHHHHHHhccCcEEEEEecCC
Confidence            43  245789999999998 45688999999999999998654

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.88  E-value=9.6e-21  Score=154.95  Aligned_cols=169  Identities=24%  Similarity=0.358  Sum_probs=138.3

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-h
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-E   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~   79 (216)
                      ++|++++.+++||+|+..                            ..+|+|++|+.++.++++++|+++++.+++.+ .
T Consensus        72 ~vG~~v~~~~~Gd~V~~~----------------------------~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~  123 (334)
T PTZ00354         72 DVGSDVKRFKEGDRVMAL----------------------------LPGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPE  123 (334)
T ss_pred             EeCCCCCCCCCCCEEEEe----------------------------cCCCceeeEEEecHHHcEeCCCCCCHHHHHHHHH
Confidence            368888889999999864                            13489999999999999999999998887754 4


Q ss_pred             hhHHHHHHHH-HcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           80 PLSVGVHACR-RANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        80 ~~~~a~~~l~-~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                      ++.++|+++. ...++++++++|+|+ |++|++++++|+.+|++ ++++..++++.+.++++|.+.+++... ..++.+.
T Consensus       124 ~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~  201 (334)
T PTZ00354        124 AFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAA-TIITTSSEEKVDFCKKLAAIILIRYPD-EEGFAPK  201 (334)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHcCCcEEEecCC-hhHHHHH
Confidence            7788999884 477899999999995 99999999999999996 667888889999898899977766422 1124445


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +.+.  +.++++|++|+++++ ..+...+++++++|+++.+|...
T Consensus       202 ~~~~--~~~~~~d~~i~~~~~-~~~~~~~~~l~~~g~~i~~~~~~  243 (334)
T PTZ00354        202 VKKL--TGEKGVNLVLDCVGG-SYLSETAEVLAVDGKWIVYGFMG  243 (334)
T ss_pred             HHHH--hCCCCceEEEECCch-HHHHHHHHHhccCCeEEEEecCC
Confidence            5544  246789999999987 77889999999999999998644

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.87  E-value=2.5e-20  Score=152.48  Aligned_cols=189  Identities=31%  Similarity=0.432  Sum_probs=150.1

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-h
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-P   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~   80 (216)
                      +|+.++.+++||+|+......|+.+      .++.|.....++. +..|+|++|+.++.+.++++|+++++.+++.+. +
T Consensus        72 ~G~~~~~~~~Gd~V~~~~~~~~~~~------~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~  144 (336)
T cd08276          72 VGEGVTRFKVGDRVVPTFFPNWLDG------PPTAEDEASALGG-PIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCA  144 (336)
T ss_pred             eCCCCcCCCCCCEEEEecccccccc------ccccccccccccc-ccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHH
Confidence            5778888999999998766555443      3344443333333 346899999999999999999999988887554 7


Q ss_pred             hHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHH
Q 048013           81 LSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE  159 (216)
Q Consensus        81 ~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (216)
                      +.++|+++ +...++++++++|+|+|++|++++++++..|++ +++++.++++.+.+++++.+.+++... ..++.+.+.
T Consensus       145 ~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~~-v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~  222 (336)
T cd08276         145 GLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGAR-VIATSSSDEKLERAKALGADHVINYRT-TPDWGEEVL  222 (336)
T ss_pred             HHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHcCCCEEEcCCc-ccCHHHHHH
Confidence            77899988 456789999999998899999999999999996 888889999999998899888776432 144555555


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      ++  +.++++|+++|+++. .....++++++++|+++.+|...
T Consensus       223 ~~--~~~~~~d~~i~~~~~-~~~~~~~~~l~~~G~~v~~g~~~  262 (336)
T cd08276         223 KL--TGGRGVDHVVEVGGP-GTLAQSIKAVAPGGVISLIGFLS  262 (336)
T ss_pred             HH--cCCCCCcEEEECCCh-HHHHHHHHhhcCCCEEEEEccCC
Confidence            54  245789999999986 67788999999999999999644

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.87  E-value=1.3e-20  Score=153.65  Aligned_cols=168  Identities=26%  Similarity=0.339  Sum_probs=137.9

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-hh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-EP   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~   80 (216)
                      +|++++.+++||+|+..+                            ..|+|++|+.++...++++|+++++.+++.+ ..
T Consensus        71 ~G~~v~~~~~Gd~V~~~~----------------------------~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~  122 (323)
T cd05282          71 VGSGVSGLLVGQRVLPLG----------------------------GEGTWQEYVVAPADDLIPVPDSISDEQAAMLYIN  122 (323)
T ss_pred             eCCCCCCCCCCCEEEEeC----------------------------CCCcceeEEecCHHHeEECCCCCCHHHHHHHhcc
Confidence            688888899999999751                            1489999999999999999999998887754 36


Q ss_pred             hHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           81 LSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        81 ~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      ..++|+++ +...+.++++++|+|+ |.+|++++++|+.+|++ ++++..++++.+.++++|.+.++++..  .++.+.+
T Consensus       123 ~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~  199 (323)
T cd05282         123 PLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFK-TINVVRRDEQVEELKALGADEVIDSSP--EDLAQRV  199 (323)
T ss_pred             HHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCCe-EEEEecChHHHHHHHhcCCCEEecccc--hhHHHHH
Confidence            67888887 4566789999999986 89999999999999996 788888888888899999988776432  3444445


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      .+.  +.++++|+++|++|+ ......+++++++|+++.+|....
T Consensus       200 ~~~--~~~~~~d~vl~~~g~-~~~~~~~~~l~~~g~~v~~g~~~~  241 (323)
T cd05282         200 KEA--TGGAGARLALDAVGG-ESATRLARSLRPGGTLVNYGLLSG  241 (323)
T ss_pred             HHH--hcCCCceEEEECCCC-HHHHHHHHhhCCCCEEEEEccCCC
Confidence            443  356789999999999 556788999999999999986544

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.87  E-value=1.2e-20  Score=150.80  Aligned_cols=160  Identities=35%  Similarity=0.458  Sum_probs=134.0

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEP   80 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~   80 (216)
                      ++|++++.+++||+|+..                               +.|++|+.++.+.++++|+++++.+++.+.+
T Consensus        34 ~vG~~v~~~~~Gd~V~~~-------------------------------~~~~~~~~v~~~~~~~ip~~l~~~~aa~~~~   82 (277)
T cd08255          34 EVGSGVTGFKPGDRVFCF-------------------------------GPHAERVVVPANLLVPLPDGLPPERAALTAL   82 (277)
T ss_pred             EeCCCCCCCCCCCEEEec-------------------------------CCcceEEEcCHHHeeECcCCCCHHHhHHHHH
Confidence            368888889999999875                               4699999999999999999999888886677


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcC-CCEEEeCCCCcccHHHHHH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLG-ADNIVKVSTNLQDIAEEVE  159 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~  159 (216)
                      +.++|++++..+++++++++|+|+|++|++++++|+.+|+++|+++++++++.+.++++| .+.++...   +       
T Consensus        83 ~~ta~~~~~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~---~-------  152 (277)
T cd08255          83 AATALNGVRDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADT---A-------  152 (277)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccc---h-------
Confidence            888999988788999999999998999999999999999865888999999999989998 34333211   0       


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      ..  ..++++|++||+++........+++++++|+++.+|....
T Consensus       153 ~~--~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~  194 (277)
T cd08255         153 DE--IGGRGADVVIEASGSPSALETALRLLRDRGRVVLVGWYGL  194 (277)
T ss_pred             hh--hcCCCCCEEEEccCChHHHHHHHHHhcCCcEEEEEeccCC
Confidence            11  1356899999999976778899999999999999986544

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.86  E-value=2.5e-20  Score=153.29  Aligned_cols=168  Identities=24%  Similarity=0.281  Sum_probs=134.2

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-h
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-P   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~   80 (216)
                      +|+++..|++||+|+..+.                           ..|+|++|+.++++.++++|+++++++++.+. +
T Consensus        78 vG~~v~~~~~Gd~V~~~~~---------------------------~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~  130 (341)
T cd08290          78 VGSGVKSLKPGDWVIPLRP---------------------------GLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVN  130 (341)
T ss_pred             eCCCCCCCCCCCEEEecCC---------------------------CCccchheEeccHHHeEeCCCCCCHHHHHHhhcc
Confidence            5778888999999997521                           24899999999999999999999998888654 7


Q ss_pred             hHHHHHHHH-HcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh----HHHHHHHHcCCCEEEeCCCC-ccc
Q 048013           81 LSVGVHACR-RANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDD----YRLSVAKKLGADNIVKVSTN-LQD  153 (216)
Q Consensus        81 ~~~a~~~l~-~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~----~~~~~~~~~g~~~~~~~~~~-~~~  153 (216)
                      +.++|+++. ...++++++|+|+|+ |++|++++++|+..|++ ++++..++    ++.+.++++|++.+++.+.. ..+
T Consensus       131 ~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  209 (341)
T cd08290         131 PCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIK-TINVVRDRPDLEELKERLKALGADHVLTEEELRSLL  209 (341)
T ss_pred             HHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCCe-EEEEEcCCCcchhHHHHHHhcCCCEEEeCccccccc
Confidence            788999984 467899999999986 99999999999999996 66665554    66778888999988775321 004


Q ss_pred             HHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccC
Q 048013          154 IAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      +.+.+..+.  .+ ++|++||++|+ ......+++++++|+++.+|..
T Consensus       210 ~~~~i~~~~--~~-~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~  253 (341)
T cd08290         210 ATELLKSAP--GG-RPKLALNCVGG-KSATELARLLSPGGTMVTYGGM  253 (341)
T ss_pred             HHHHHHHHc--CC-CceEEEECcCc-HhHHHHHHHhCCCCEEEEEecc
Confidence            444454432  33 79999999998 5567889999999999999854

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.86  E-value=4.7e-20  Score=150.81  Aligned_cols=168  Identities=27%  Similarity=0.356  Sum_probs=138.5

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-hh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-EP   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~   80 (216)
                      +|++|+.+++||+|+...                           ...|+|++|+.++.+.++++|+++++++++.+ ..
T Consensus        72 vG~~v~~~~~Gd~V~~~~---------------------------~~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~  124 (327)
T PRK10754         72 VGSGVKHIKVGDRVVYAQ---------------------------SALGAYSSVHNVPADKAAILPDAISFEQAAASFLK  124 (327)
T ss_pred             eCCCCCCCCCCCEEEECC---------------------------CCCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHH
Confidence            678888899999998530                           13489999999999999999999999888754 36


Q ss_pred             hHHHHHHH-HHcCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           81 LSVGVHAC-RRANIGPETNVLIMG-SGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        81 ~~~a~~~l-~~~~~~~~~~vlv~G-ag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      ..++|.++ +...+.++++++|+| +|.+|++++++++.+|++ ++.++.++++.+.++++|++.+++.+  ..++.+.+
T Consensus       125 ~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~-v~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~  201 (327)
T PRK10754        125 GLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAK-LIGTVGSAQKAQRAKKAGAWQVINYR--EENIVERV  201 (327)
T ss_pred             HHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHCCCCEEEcCC--CCcHHHHH
Confidence            66788887 456789999999997 599999999999999996 88888889999999999998776642  34555556


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +++  +.++++|+++|++++ ......+++++++|+++.+|...
T Consensus       202 ~~~--~~~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~g~~~  242 (327)
T PRK10754        202 KEI--TGGKKVRVVYDSVGK-DTWEASLDCLQRRGLMVSFGNAS  242 (327)
T ss_pred             HHH--cCCCCeEEEEECCcH-HHHHHHHHHhccCCEEEEEccCC
Confidence            555  356789999999998 67788999999999999998543

>cd08251 polyketide_synthase polyketide synthase

Probab=99.85  E-value=8.3e-20  Score=147.10  Aligned_cols=168  Identities=27%  Similarity=0.412  Sum_probs=140.7

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-h
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-P   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~   80 (216)
                      +|++++.+++||+|+....                          ...|+|++|+.++++.++++|+++++++++.+. +
T Consensus        52 ~G~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~  105 (303)
T cd08251          52 VGPHVTRLAVGDEVIAGTG--------------------------ESMGGHATLVTVPEDQVVRKPASLSFEEACALPVV  105 (303)
T ss_pred             ECCCCCCCCCCCEEEEecC--------------------------CCCcceeeEEEccHHHeEECCCCCCHHHHHHhHHH
Confidence            6788888999999987521                          135899999999999999999999999888654 7


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE  159 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (216)
                      +.++|.+++...++++++++|+|+ |++|++++++++.+|++ +++++.++++.+.++++|.+.+++..  ..++.+.+.
T Consensus       106 ~~ta~~~l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~i~  182 (303)
T cd08251         106 FLTVIDAFARAGLAKGEHILIQTATGGTGLMAVQLARLKGAE-IYATASSDDKLEYLKQLGVPHVINYV--EEDFEEEIM  182 (303)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHcCCCEEEeCC--CccHHHHHH
Confidence            788999988788999999999975 99999999999999995 88888888888989999998877643  245555555


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccC
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      ++.  .++++|+++|++++ ......+++++++|+++.+|..
T Consensus       183 ~~~--~~~~~d~v~~~~~~-~~~~~~~~~l~~~g~~v~~~~~  221 (303)
T cd08251         183 RLT--GGRGVDVVINTLSG-EAIQKGLNCLAPGGRYVEIAMT  221 (303)
T ss_pred             HHc--CCCCceEEEECCcH-HHHHHHHHHhccCcEEEEEecc
Confidence            542  45789999999987 6778899999999999999854

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.85  E-value=1e-19  Score=149.73  Aligned_cols=174  Identities=27%  Similarity=0.352  Sum_probs=139.2

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-h
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-P   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~   80 (216)
                      +|++++.+++||+|+..+...|+                   + ...+|+|++|+.++...++++|+++++.+++.++ +
T Consensus        69 vG~~v~~~~~Gd~V~~~~~~~~~-------------------~-~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~  128 (339)
T cd08249          69 VGSGVTRFKVGDRVAGFVHGGNP-------------------N-DPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVG  128 (339)
T ss_pred             eCCCcCcCCCCCEEEEEeccccC-------------------C-CCCCCcccceEEechhheEECCCCCCHHHceecchH
Confidence            68888889999999976432221                   0 1246899999999999999999999999888665 7


Q ss_pred             hHHHHHHHH-HcCC----------CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCC
Q 048013           81 LSVGVHACR-RANI----------GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS  148 (216)
Q Consensus        81 ~~~a~~~l~-~~~~----------~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~  148 (216)
                      +.++|+++. ..++          +++++++|+|+ |.+|++++++++.+|++ ++.+. +.++.+.++++|++.+++..
T Consensus       129 ~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~~-v~~~~-~~~~~~~~~~~g~~~v~~~~  206 (339)
T cd08249         129 LVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYK-VITTA-SPKNFDLVKSLGADAVFDYH  206 (339)
T ss_pred             HHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCCe-EEEEE-CcccHHHHHhcCCCEEEECC
Confidence            889999874 3333          78999999996 89999999999999996 66666 55788888999998877753


Q ss_pred             CCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhc--CCEEEEeccCC
Q 048013          149 TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRA--GGKVCLVGMGH  202 (216)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~--~G~~v~~g~~~  202 (216)
                        ..++.+.++++   .++++|+++|++|++..+..+++++++  +|+++.+|...
T Consensus       207 --~~~~~~~l~~~---~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g~~~  257 (339)
T cd08249         207 --DPDVVEDIRAA---TGGKLRYALDCISTPESAQLCAEALGRSGGGKLVSLLPVP  257 (339)
T ss_pred             --CchHHHHHHHh---cCCCeeEEEEeeccchHHHHHHHHHhccCCCEEEEecCCC
Confidence              34555555544   356899999999986778899999999  99999998654

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.85  E-value=1.6e-19  Score=147.45  Aligned_cols=167  Identities=23%  Similarity=0.309  Sum_probs=130.7

Q ss_pred             CCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-hhHHH
Q 048013            6 VKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-PLSVG   84 (216)
Q Consensus         6 v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a   84 (216)
                      ++.+++||+|+..+..                     ++. ..+|+|++|+.++++.++++|+++++++++.++ .+.++
T Consensus        74 ~~~~~~Gd~V~~~~~~---------------------~~~-~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta  131 (326)
T cd08289          74 DPRFKPGDEVIVTSYD---------------------LGV-SHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTA  131 (326)
T ss_pred             CCCCCCCCEEEEcccc---------------------cCC-CCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHH
Confidence            4568999999875310                     111 246999999999999999999999999988665 55677


Q ss_pred             HHHHHH---cCC-CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHH
Q 048013           85 VHACRR---ANI-GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE  159 (216)
Q Consensus        85 ~~~l~~---~~~-~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (216)
                      +.++..   ..+ .++++++|+|+ |++|++++++|+.+|++ |+++++++++.+.++++|++.+++.+.  . ..+.+.
T Consensus       132 ~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~~g~~~v~~~~~--~-~~~~~~  207 (326)
T cd08289         132 ALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGYE-VVASTGKADAADYLKKLGAKEVIPREE--L-QEESIK  207 (326)
T ss_pred             HHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCCe-EEEEecCHHHHHHHHHcCCCEEEcchh--H-HHHHHH
Confidence            777632   333 34789999997 99999999999999995 888889999999999999987766422  1 223333


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      ++   .++++|++||++|+ ..+...+++++++|+++.+|...
T Consensus       208 ~~---~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~i~~g~~~  246 (326)
T cd08289         208 PL---EKQRWAGAVDPVGG-KTLAYLLSTLQYGGSVAVSGLTG  246 (326)
T ss_pred             hh---ccCCcCEEEECCcH-HHHHHHHHHhhcCCEEEEEeecC
Confidence            33   35679999999998 77889999999999999999653

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.85  E-value=1.6e-19  Score=146.03  Aligned_cols=167  Identities=25%  Similarity=0.285  Sum_probs=134.9

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-h
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-P   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~   80 (216)
                      +|++++.|++||+|+..                            ...|+|++|+.++.+.++++|+++++++++.+. .
T Consensus        66 ~G~~v~~~~~Gd~V~~~----------------------------~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~  117 (305)
T cd08270          66 AAADGSGPAVGARVVGL----------------------------GAMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVA  117 (305)
T ss_pred             eCCCCCCCCCCCEEEEe----------------------------cCCcceeeEEEEchHHeEECCCCCCHHHHHHhHhH
Confidence            67888889999999864                            135899999999999999999999999888655 6


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE  159 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (216)
                      +.++|+++......++++++|+|+ |++|++++++++.+|++ ++.+++++++.+.++++|++..+...   .       
T Consensus       118 ~~ta~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~~g~~~~~~~~---~-------  186 (305)
T cd08270         118 GVTALRALRRGGPLLGRRVLVTGASGGVGRFAVQLAALAGAH-VVAVVGSPARAEGLRELGAAEVVVGG---S-------  186 (305)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHcCCcEEEecc---c-------
Confidence            789999986554456999999997 99999999999999995 88888899999999999987554311   1       


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC-CCcccchh
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR-EMTVPLTP  211 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~  211 (216)
                      ++   .++++|+++|++|+ ......+++++++|+++.+|.... ...+++..
T Consensus       187 ~~---~~~~~d~vl~~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  235 (305)
T cd08270         187 EL---SGAPVDLVVDSVGG-PQLARALELLAPGGTVVSVGSSSGEPAVFNPAA  235 (305)
T ss_pred             cc---cCCCceEEEECCCc-HHHHHHHHHhcCCCEEEEEeccCCCcccccHHH
Confidence            11   23479999999998 577899999999999999996442 23344443

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.85  E-value=1.9e-19  Score=147.33  Aligned_cols=164  Identities=22%  Similarity=0.297  Sum_probs=133.9

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchhh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL   81 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~   81 (216)
                      +|++++.+++||+|+..                             ..|+|++|+.++.+.++++|++. .+.+.+..++
T Consensus        75 vG~~v~~~~~Gd~V~~~-----------------------------~~g~~~s~~~v~~~~~~~ip~~~-~~~a~l~~~~  124 (329)
T cd08250          75 VGEGVTDFKVGDAVATM-----------------------------SFGAFAEYQVVPARHAVPVPELK-PEVLPLLVSG  124 (329)
T ss_pred             ECCCCCCCCCCCEEEEe-----------------------------cCcceeEEEEechHHeEECCCCc-chhhhcccHH
Confidence            57788889999999874                             35899999999999999999873 3334455678


Q ss_pred             HHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHH
Q 048013           82 SVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE  159 (216)
Q Consensus        82 ~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (216)
                      .++|+++ +...++++++++|+|+ |.+|++++++++..|++ ++++++++++.+.++++|.+.+++.+  ..+..+.+.
T Consensus       125 ~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~~g~~~v~~~~--~~~~~~~~~  201 (329)
T cd08250         125 LTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCH-VIGTCSSDEKAEFLKSLGCDRPINYK--TEDLGEVLK  201 (329)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCe-EEEEeCcHHHHHHHHHcCCceEEeCC--CccHHHHHH
Confidence            8999998 4567899999999995 99999999999999996 88888888888888999987776643  234444444


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +.   .++++|++||++|+ ......+++++++|+++.+|...
T Consensus       202 ~~---~~~~vd~v~~~~g~-~~~~~~~~~l~~~g~~v~~g~~~  240 (329)
T cd08250         202 KE---YPKGVDVVYESVGG-EMFDTCVDNLALKGRLIVIGFIS  240 (329)
T ss_pred             Hh---cCCCCeEEEECCcH-HHHHHHHHHhccCCeEEEEeccc
Confidence            43   35689999999998 77889999999999999998543

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.84  E-value=4.2e-19  Score=145.58  Aligned_cols=168  Identities=23%  Similarity=0.310  Sum_probs=136.3

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-h
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-P   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~   80 (216)
                      +|+++..+++||+|+.....                         ..+|+|++|+.++.+.++++|+++++++++.+. .
T Consensus        74 ~G~~v~~~~~Gd~V~~~~~~-------------------------~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~  128 (336)
T cd08252          74 VGSEVTLFKVGDEVYYAGDI-------------------------TRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLT  128 (336)
T ss_pred             cCCCCCCCCCCCEEEEcCCC-------------------------CCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhH
Confidence            67788889999999864110                         135899999999999999999999998888554 5


Q ss_pred             hHHHHHHH-HHcCCCC-----CCEEEEEcC-CHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcc
Q 048013           81 LSVGVHAC-RRANIGP-----ETNVLIMGS-GPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQ  152 (216)
Q Consensus        81 ~~~a~~~l-~~~~~~~-----~~~vlv~Ga-g~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~  152 (216)
                      +.++|.++ +...+.+     +++++|+|+ |++|++++++++.+| + ++++++.++++.+.++++|.+.+++..   .
T Consensus       129 ~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~~g~~~~~~~~---~  204 (336)
T cd08252         129 SLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWVKELGADHVINHH---Q  204 (336)
T ss_pred             HHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHHHhcCCcEEEeCC---c
Confidence            66788887 5566766     999999985 999999999999999 7 488888888899999999998877643   2


Q ss_pred             cHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccC
Q 048013          153 DIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       153 ~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      ++.+.+..   ..++++|++||++++......++++++++|+++.+|..
T Consensus       205 ~~~~~i~~---~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~  250 (336)
T cd08252         205 DLAEQLEA---LGIEPVDYIFCLTDTDQHWDAMAELIAPQGHICLIVDP  250 (336)
T ss_pred             cHHHHHHh---hCCCCCCEEEEccCcHHHHHHHHHHhcCCCEEEEecCC
Confidence            44444432   23468999999999767888999999999999999854

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.84  E-value=2.1e-19  Score=146.04  Aligned_cols=164  Identities=28%  Similarity=0.424  Sum_probs=133.1

Q ss_pred             CCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-hhhHHHH
Q 048013            7 KTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-EPLSVGV   85 (216)
Q Consensus         7 ~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~~~~a~   85 (216)
                      ..+++||+|+.....-                     + ....|+|++|+.+++..++++|+++++++++.+ .++.++|
T Consensus        74 ~~~~~Gd~V~~~~~~~---------------------~-~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~  131 (320)
T cd08243          74 GTFTPGQRVATAMGGM---------------------G-RTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAW  131 (320)
T ss_pred             CCCCCCCEEEEecCCC---------------------C-CCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHH
Confidence            4689999998752100                     0 024589999999999999999999999887754 4888999


Q ss_pred             HHHH-HcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           86 HACR-RANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        86 ~~l~-~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      +++. ...+.++++++|+|+ |++|++++++|+..|++ |+++..++++.+.++++|++.++..   ..++.+.+.++  
T Consensus       132 ~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~i~~~--  205 (320)
T cd08243         132 GSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGAT-VTATTRSPERAALLKELGADEVVID---DGAIAEQLRAA--  205 (320)
T ss_pred             HHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHhcCCcEEEec---CccHHHHHHHh--
Confidence            9984 456889999999996 99999999999999996 8888888999999999999776542   23444444443  


Q ss_pred             HcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccC
Q 048013          164 AMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                        ++++|+++|++++ ..+...+++++++|+++.+|..
T Consensus       206 --~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~g~~  240 (320)
T cd08243         206 --PGGFDKVLELVGT-ATLKDSLRHLRPGGIVCMTGLL  240 (320)
T ss_pred             --CCCceEEEECCCh-HHHHHHHHHhccCCEEEEEccC
Confidence              6789999999998 6788999999999999999964

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>smart00829 PKS_ER Enoylreductase

Probab=99.84  E-value=2.9e-19  Score=142.56  Aligned_cols=165  Identities=27%  Similarity=0.379  Sum_probs=137.5

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-h
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-P   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~   80 (216)
                      +|++++.+++||+|+..                             ..|+|++|+.++.+.++++|+++++++++.+. +
T Consensus        38 ~G~~~~~~~~Gd~V~~~-----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   88 (288)
T smart00829       38 VGPGVTGLAVGDRVMGL-----------------------------APGSFATYVRTDARLVVPIPDGLSFEEAATVPVV   88 (288)
T ss_pred             eCCCCcCCCCCCEEEEE-----------------------------cCCceeeEEEccHHHeEECCCCCCHHHHHhchHH
Confidence            57888889999999874                             24899999999999999999999998888654 7


Q ss_pred             hHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCC--CEEEeCCCCcccHHH
Q 048013           81 LSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGA--DNIVKVSTNLQDIAE  156 (216)
Q Consensus        81 ~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~  156 (216)
                      +.++|.++ +...+.++++++|+|+ |.+|++++++++..|++ ++++++++++.+.++++|.  +.+++.  ...++.+
T Consensus        89 ~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~  165 (288)
T smart00829       89 FLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAE-VFATAGSPEKRDFLRELGIPDDHIFSS--RDLSFAD  165 (288)
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHcCCChhheeeC--CCccHHH
Confidence            77888887 6678899999999985 99999999999999995 8888889999999999998  555553  2334555


Q ss_pred             HHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccC
Q 048013          157 EVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       157 ~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      .+.+..  .++++|.++|++++ ......+++++++|+++.+|..
T Consensus       166 ~~~~~~--~~~~~d~vi~~~~~-~~~~~~~~~l~~~g~~v~~g~~  207 (288)
T smart00829      166 EILRAT--GGRGVDVVLNSLAG-EFLDASLRCLAPGGRFVEIGKR  207 (288)
T ss_pred             HHHHHh--CCCCcEEEEeCCCH-HHHHHHHHhccCCcEEEEEcCc
Confidence            555442  35679999999997 7778899999999999999864

Enoylreductase in Polyketide synthases.

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.84  E-value=6.6e-19  Score=142.99  Aligned_cols=172  Identities=30%  Similarity=0.408  Sum_probs=139.2

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-hh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-EP   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~   80 (216)
                      +|+++..|++||+|+..+...                       ....|++++|+.++++.++++|+++++++++.+ .+
T Consensus        72 ~g~~~~~~~~Gd~v~~~~~~~-----------------------~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~  128 (325)
T cd08253          72 VGEGVDGLKVGDRVWLTNLGW-----------------------GRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIP  128 (325)
T ss_pred             eCCCCCCCCCCCEEEEecccc-----------------------CCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhH
Confidence            678888899999999763110                       013589999999999999999999999888755 47


Q ss_pred             hHHHHHHHH-HcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           81 LSVGVHACR-RANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        81 ~~~a~~~l~-~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      +.++|+++. ..++.++++++|+|+ |++|++++++++..|++ ++++++++++.+.+++++.+.+++..  ..++.+.+
T Consensus       129 ~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~  205 (325)
T cd08253         129 ALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGAR-VIATASSAEGAELVRQAGADAVFNYR--AEDLADRI  205 (325)
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHcCCCEEEeCC--CcCHHHHH
Confidence            888998884 478899999999996 99999999999999985 88888889888888889988776642  33454455


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      .++.  .++++|++++++++ ......+++++++|+++.+|...
T Consensus       206 ~~~~--~~~~~d~vi~~~~~-~~~~~~~~~l~~~g~~v~~~~~~  246 (325)
T cd08253         206 LAAT--AGQGVDVIIEVLAN-VNLAKDLDVLAPGGRIVVYGSGG  246 (325)
T ss_pred             HHHc--CCCceEEEEECCch-HHHHHHHHhhCCCCEEEEEeecC
Confidence            4442  35689999999998 56788899999999999998643

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.84  E-value=4.8e-19  Score=143.38  Aligned_cols=167  Identities=29%  Similarity=0.401  Sum_probs=137.5

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-hh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-EP   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~   80 (216)
                      +|++++.+++||+|+...                            ..|+|++|+.++++.++++|+++++.+++.+ ..
T Consensus        69 ~g~~~~~~~~G~~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  120 (320)
T cd05286          69 VGPGVTGFKVGDRVAYAG----------------------------PPGAYAEYRVVPASRLVKLPDGISDETAAALLLQ  120 (320)
T ss_pred             ECCCCCCCCCCCEEEEec----------------------------CCCceeEEEEecHHHceeCCCCCCHHHHhhccch
Confidence            577888899999998741                            1589999999999999999999998888754 46


Q ss_pred             hHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           81 LSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        81 ~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      ..+++.++ +..+++++++++|+|+ |++|++++++++.+|++ +++++.++++.+.++++|.+.+++.  ...++.+.+
T Consensus       121 ~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~  197 (320)
T cd05286         121 GLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGAT-VIGTVSSEEKAELARAAGADHVINY--RDEDFVERV  197 (320)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHCCCCEEEeC--CchhHHHHH
Confidence            66788887 4577889999999995 99999999999999995 8888889899999988998877653  223444445


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      .++  +.++++|++++++++ ......+++++++|+++.+|...
T Consensus       198 ~~~--~~~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~g~~~  238 (320)
T cd05286         198 REI--TGGRGVDVVYDGVGK-DTFEGSLDSLRPRGTLVSFGNAS  238 (320)
T ss_pred             HHH--cCCCCeeEEEECCCc-HhHHHHHHhhccCcEEEEEecCC
Confidence            544  245689999999998 67889999999999999998644

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.83  E-value=7e-19  Score=142.59  Aligned_cols=167  Identities=29%  Similarity=0.421  Sum_probs=136.8

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-hh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-EP   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~   80 (216)
                      +|+++..+++||+|+..                            ..+|+|++|+.++++.++++|+++++.+++.+ .+
T Consensus        72 vg~~~~~~~~Gd~V~~~----------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~  123 (323)
T cd05276          72 VGPGVTGWKVGDRVCAL----------------------------LAGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEV  123 (323)
T ss_pred             eCCCCCCCCCCCEEEEe----------------------------cCCCceeEEEEcCHHHhccCCCCCCHHHHhhchhH
Confidence            57777889999999864                            13489999999999999999999998888754 47


Q ss_pred             hHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           81 LSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        81 ~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      +.++|+++ +...+.++++++|+|+ |++|++++++++..|++ ++++++++++.+.+++++.+.+++..  ..+..+.+
T Consensus       124 ~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~-v~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~  200 (323)
T cd05276         124 FFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGAR-VIATAGSEEKLEACRALGADVAINYR--TEDFAEEV  200 (323)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHcCCCEEEeCC--chhHHHHH
Confidence            88999997 4567889999999996 89999999999999996 88888888888888889987766532  23444444


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      .+.  ..+.++|++++++|+ ..+...+++++++|+++.+|...
T Consensus       201 ~~~--~~~~~~d~vi~~~g~-~~~~~~~~~~~~~g~~i~~~~~~  241 (323)
T cd05276         201 KEA--TGGRGVDVILDMVGG-DYLARNLRALAPDGRLVLIGLLG  241 (323)
T ss_pred             HHH--hCCCCeEEEEECCch-HHHHHHHHhhccCCEEEEEecCC
Confidence            443  235689999999998 55788999999999999998643

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.83  E-value=6.5e-19  Score=140.66  Aligned_cols=166  Identities=25%  Similarity=0.328  Sum_probs=136.4

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-hh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-EP   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~   80 (216)
                      +|+++..+++||+|+..                             ..|+|++|+.++.+.++++|+++++.+++.+ .+
T Consensus        42 ~g~~~~~~~~Gd~V~~~-----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   92 (293)
T cd05195          42 VGSGVTGLKVGDRVMGL-----------------------------APGAFATHVRVDARLVVKIPDSLSFEEAATLPVA   92 (293)
T ss_pred             ecCCccCCCCCCEEEEE-----------------------------ecCcccceEEechhheEeCCCCCCHHHHhhchHH
Confidence            57788889999999874                             3489999999999999999999999888865 47


Q ss_pred             hHHHHHHH-HHcCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcC--CCEEEeCCCCcccHHH
Q 048013           81 LSVGVHAC-RRANIGPETNVLIMG-SGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLG--ADNIVKVSTNLQDIAE  156 (216)
Q Consensus        81 ~~~a~~~l-~~~~~~~~~~vlv~G-ag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~  156 (216)
                      +.+++.++ +...++++++++|+| .|++|++++++++.+|++ +++++.++++.+.+++++  .+.+++.  ...++.+
T Consensus        93 ~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  169 (293)
T cd05195          93 YLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAE-VFATVGSEEKREFLRELGGPVDHIFSS--RDLSFAD  169 (293)
T ss_pred             HHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhCCCcceEeec--CchhHHH
Confidence            78888887 557889999999998 599999999999999995 888888888888888877  5555543  2234445


Q ss_pred             HHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          157 EVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       157 ~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      .+.++.  .++++|.+++++++ ..+...+++++++|+++.+|...
T Consensus       170 ~~~~~~--~~~~~d~vi~~~~~-~~~~~~~~~l~~~g~~v~~g~~~  212 (293)
T cd05195         170 GILRAT--GGRGVDVVLNSLSG-ELLRASWRCLAPFGRFVEIGKRD  212 (293)
T ss_pred             HHHHHh--CCCCceEEEeCCCc-hHHHHHHHhcccCceEEEeeccc
Confidence            555442  46689999999999 47889999999999999998644

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.83  E-value=7.1e-19  Score=143.55  Aligned_cols=167  Identities=22%  Similarity=0.279  Sum_probs=128.8

Q ss_pred             CCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-hhHH
Q 048013            5 EVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-PLSV   83 (216)
Q Consensus         5 ~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~   83 (216)
                      ++..|++||+|+..+...                     + .+.+|+|++|+.+|++.++++|+++++++++.+. .+.+
T Consensus        72 ~~~~~~~Gd~V~~~~~~~---------------------~-~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~t  129 (323)
T TIGR02823        72 EDPRFREGDEVIVTGYGL---------------------G-VSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFT  129 (323)
T ss_pred             CCCCCCCCCEEEEccCCC---------------------C-CCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHH
Confidence            345789999999753110                     0 0245899999999999999999999999888654 5566


Q ss_pred             HHHHH---HHcCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           84 GVHAC---RRANIGPET-NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        84 a~~~l---~~~~~~~~~-~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      ++.++   ....+.+++ +++|+|+ |.+|++++++|+.+|++ +++++.++++.+.++++|++.+++.++  .+  ..+
T Consensus       130 a~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~-vi~~~~~~~~~~~~~~~g~~~~~~~~~--~~--~~~  204 (323)
T TIGR02823       130 AALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYE-VVASTGKAEEEDYLKELGASEVIDRED--LS--PPG  204 (323)
T ss_pred             HHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCe-EEEEeCCHHHHHHHHhcCCcEEEcccc--HH--HHH
Confidence            76665   334478888 9999996 99999999999999996 777777778888889999987765321  11  123


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +.+   .+.++|+++|++|+ ..+...+++++++|+++.+|...
T Consensus       205 ~~~---~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~  244 (323)
T TIGR02823       205 KPL---EKERWAGAVDTVGG-HTLANVLAQLKYGGAVAACGLAG  244 (323)
T ss_pred             HHh---cCCCceEEEECccH-HHHHHHHHHhCCCCEEEEEcccC
Confidence            332   23359999999998 56788999999999999999654

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.83  E-value=8.6e-19  Score=142.95  Aligned_cols=167  Identities=23%  Similarity=0.329  Sum_probs=129.7

Q ss_pred             CCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-hhHHH
Q 048013            6 VKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-PLSVG   84 (216)
Q Consensus         6 v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a   84 (216)
                      ++.+++||+|+..+.                     ..|. ..+|+|++|+.++++.++++|+++++++++.+. .+.++
T Consensus        74 ~~~~~~Gd~V~~~~~---------------------~~g~-~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta  131 (325)
T cd05280          74 DPRFREGDEVLVTGY---------------------DLGM-NTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTA  131 (325)
T ss_pred             CCCCCCCCEEEEccc---------------------ccCC-CCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHH
Confidence            456889999987521                     0111 246899999999999999999999999988664 56678


Q ss_pred             HHHHHH---cCCC-CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHH
Q 048013           85 VHACRR---ANIG-PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE  159 (216)
Q Consensus        85 ~~~l~~---~~~~-~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (216)
                      |.+++.   ..+. .+++|+|+|+ |++|++++++|+.+|++ |+++++++++++.++++|++.+++..    +......
T Consensus       132 ~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~  206 (325)
T cd05280         132 ALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGYT-VVALTGKEEQADYLKSLGASEVLDRE----DLLDESK  206 (325)
T ss_pred             HHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHhcCCcEEEcch----hHHHHHH
Confidence            877743   2334 4579999997 99999999999999996 89999999999999999998776532    1111222


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +.  ..++++|++||++++ ..+...+++++++|+++.+|...
T Consensus       207 ~~--~~~~~~d~vi~~~~~-~~~~~~~~~l~~~g~~v~~g~~~  246 (325)
T cd05280         207 KP--LLKARWAGAIDTVGG-DVLANLLKQTKYGGVVASCGNAA  246 (325)
T ss_pred             HH--hcCCCccEEEECCch-HHHHHHHHhhcCCCEEEEEecCC
Confidence            22  245579999999998 67899999999999999999643

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.82  E-value=1.3e-18  Score=142.30  Aligned_cols=146  Identities=23%  Similarity=0.253  Sum_probs=119.2

Q ss_pred             CccceeEEecC-CceEECCCCCC--c-hhhh-cchhhHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCe
Q 048013           50 GCLANQVVHPA-DLCFKLPDNVS--L-EEGA-MCEPLSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPR  122 (216)
Q Consensus        50 g~~~~~~~~~~-~~~~~ip~~~~--~-~~aa-~~~~~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~  122 (216)
                      ++|++|+.+++ +.++++|++++  + +.++ +..++.++|+++ +...+.++++++|+|+ |++|++++++++..|++ 
T Consensus        94 ~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~-  172 (329)
T cd05288          94 LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGAR-  172 (329)
T ss_pred             cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCCE-
Confidence            58999999999 99999999985  3 3333 445788899988 4467889999999995 99999999999999995 


Q ss_pred             EEEEcCChHHHHHHHH-cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccC
Q 048013          123 IVIVDVDDYRLSVAKK-LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       123 vv~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      ++++++++++.+.+++ +|++.+++++  +.++.+.+.++   .++++|++||++|+ ..+..++++++++|+++.+|..
T Consensus       173 vi~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~v~~~---~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~g~~  246 (329)
T cd05288         173 VVGIAGSDEKCRWLVEELGFDAAINYK--TPDLAEALKEA---APDGIDVYFDNVGG-EILDAALTLLNKGGRIALCGAI  246 (329)
T ss_pred             EEEEeCCHHHHHHHHhhcCCceEEecC--ChhHHHHHHHh---ccCCceEEEEcchH-HHHHHHHHhcCCCceEEEEeec
Confidence            8888888888888888 9988777653  23454445544   24689999999998 6788999999999999999864


Q ss_pred             C
Q 048013          202 H  202 (216)
Q Consensus       202 ~  202 (216)
                      .
T Consensus       247 ~  247 (329)
T cd05288         247 S  247 (329)
T ss_pred             c
Confidence            4

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.82  E-value=1.4e-18  Score=143.28  Aligned_cols=165  Identities=28%  Similarity=0.316  Sum_probs=130.9

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-h
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-P   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~   80 (216)
                      +|++++.+++||+|+..+..                         ...|+|++|+.++++.++++|+++++++++.+. +
T Consensus        88 vG~~v~~~~~Gd~V~~~~~~-------------------------~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~  142 (350)
T cd08248          88 IGSGVKSFEIGDEVWGAVPP-------------------------WSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYA  142 (350)
T ss_pred             cCCCcccCCCCCEEEEecCC-------------------------CCCccceeEEEecHHHeecCCCCCCHHHHhhchhH
Confidence            67888889999999875221                         135899999999999999999999998888554 7


Q ss_pred             hHHHHHHHH-HcCCC----CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccH
Q 048013           81 LSVGVHACR-RANIG----PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI  154 (216)
Q Consensus        81 ~~~a~~~l~-~~~~~----~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  154 (216)
                      +.++|.++. ...+.    ++++++|+|+ |++|++++++++.+|++ ++++..+ ++.+.++++|.+..++..  ..++
T Consensus       143 ~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~-v~~~~~~-~~~~~~~~~g~~~~~~~~--~~~~  218 (350)
T cd08248         143 GLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAH-VTTTCST-DAIPLVKSLGADDVIDYN--NEDF  218 (350)
T ss_pred             HHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCc-chHHHHHHhCCceEEECC--ChhH
Confidence            778999884 45554    4999999995 99999999999999996 7777654 577788889987776642  2233


Q ss_pred             HHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccC
Q 048013          155 AEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       155 ~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      .+.+.     ..+++|++||++|. .....++++++++|+++.+|..
T Consensus       219 ~~~l~-----~~~~vd~vi~~~g~-~~~~~~~~~l~~~G~~v~~g~~  259 (350)
T cd08248         219 EEELT-----ERGKFDVILDTVGG-DTEKWALKLLKKGGTYVTLVSP  259 (350)
T ss_pred             HHHHH-----hcCCCCEEEECCCh-HHHHHHHHHhccCCEEEEecCC
Confidence            33322     23579999999998 4788999999999999999854

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.82  E-value=2.3e-18  Score=139.95  Aligned_cols=167  Identities=28%  Similarity=0.389  Sum_probs=135.7

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-hh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-EP   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~   80 (216)
                      +|+++..+++||+|+..                            ..+|+|++|+.++.+.++++|+++++.+++.+ .+
T Consensus        72 vg~~~~~~~~Gd~V~~~----------------------------~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~  123 (325)
T TIGR02824        72 VGEGVSRWKVGDRVCAL----------------------------VAGGGYAEYVAVPAGQVLPVPEGLSLVEAAALPET  123 (325)
T ss_pred             eCCCCCCCCCCCEEEEc----------------------------cCCCcceeEEEecHHHcEeCCCCCCHHHHHhhhHH
Confidence            57777889999999874                            13489999999999999999999988777644 47


Q ss_pred             hHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           81 LSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        81 ~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      +.++|.++ +...++++++++|+|+ |++|++++++++..|++ ++++.+++++.+.++++|.+.+++.  ...++.+.+
T Consensus       124 ~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~  200 (325)
T TIGR02824       124 FFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGAR-VFTTAGSDEKCAACEALGADIAINY--REEDFVEVV  200 (325)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHcCCcEEEec--CchhHHHHH
Confidence            78888886 6678999999999996 99999999999999995 8888888888888888988766553  223444444


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      ...  ..++++|++++++++ ......+++++++|+++.+|...
T Consensus       201 ~~~--~~~~~~d~~i~~~~~-~~~~~~~~~l~~~g~~v~~g~~~  241 (325)
T TIGR02824       201 KAE--TGGKGVDVILDIVGG-SYLNRNIKALALDGRIVQIGFQG  241 (325)
T ss_pred             HHH--cCCCCeEEEEECCch-HHHHHHHHhhccCcEEEEEecCC
Confidence            443  235679999999998 57788999999999999998643

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.82  E-value=2.8e-18  Score=141.82  Aligned_cols=173  Identities=22%  Similarity=0.279  Sum_probs=130.9

Q ss_pred             CCCCCC-CCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCC----ceEECCCCCCchhhh
Q 048013            2 VGSEVK-TLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD----LCFKLPDNVSLEEGA   76 (216)
Q Consensus         2 vG~~v~-~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~ip~~~~~~~aa   76 (216)
                      +|++++ .|++||+|+......|                       ...|+|++|+.++..    .++++|+++++++++
T Consensus        73 vG~~v~~~~~~Gd~V~~~~~~~~-----------------------~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa  129 (352)
T cd08247          73 VGSNVASEWKVGDEVCGIYPHPY-----------------------GGQGTLSQYLLVDPKKDKKSITRKPENISLEEAA  129 (352)
T ss_pred             eCcccccCCCCCCEEEEeecCCC-----------------------CCCceeeEEEEEccccccceeEECCCCCCHHHHH
Confidence            688888 8999999987532111                       135899999999987    789999999999988


Q ss_pred             cch-hhHHHHHHHHHc--CCCCCCEEEEEcC-CHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHHHcCCCEEEeCCCCc
Q 048013           77 MCE-PLSVGVHACRRA--NIGPETNVLIMGS-GPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAKKLGADNIVKVSTNL  151 (216)
Q Consensus        77 ~~~-~~~~a~~~l~~~--~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~  151 (216)
                      .+. .+.++|++++..  .++++++++|+|+ |.+|++++++|+.+| .+.++++. ++++.+.++++|++.+++.+...
T Consensus       130 ~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~~g~~~~i~~~~~~  208 (352)
T cd08247         130 AWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKKLGADHFIDYDAHS  208 (352)
T ss_pred             HhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHHhCCCEEEecCCCc
Confidence            654 677899998554  6899999999997 799999999999874 43466665 45555677889998877653321


Q ss_pred             c-cHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhh---cCCEEEEec
Q 048013          152 Q-DIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATR---AGGKVCLVG  199 (216)
Q Consensus       152 ~-~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~---~~G~~v~~g  199 (216)
                      . .+...+.+.. +.++++|++||++|+......++++++   ++|+++.++
T Consensus       209 ~~~~~~~~~~~~-~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~G~~v~~~  259 (352)
T cd08247         209 GVKLLKPVLENV-KGQGKFDLILDCVGGYDLFPHINSILKPKSKNGHYVTIV  259 (352)
T ss_pred             ccchHHHHHHhh-cCCCCceEEEECCCCHHHHHHHHHHhCccCCCCEEEEEe
Confidence            0 0323332221 126789999999998667788999999   999999774

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.82  E-value=9.4e-19  Score=136.15  Aligned_cols=147  Identities=18%  Similarity=0.276  Sum_probs=121.5

Q ss_pred             ccceeEEecCCce--EECCCC----CCchhhhcchhhHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCe
Q 048013           51 CLANQVVHPADLC--FKLPDN----VSLEEGAMCEPLSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPR  122 (216)
Q Consensus        51 ~~~~~~~~~~~~~--~~ip~~----~~~~~aa~~~~~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~  122 (216)
                      +|.||.++++...  ++||.+    +++....+-++..|||-.+ +++.+++|++++|.|| |++|+++.|+|+.+|+ .
T Consensus       102 gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~  180 (343)
T KOG1196|consen  102 GWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGC-Y  180 (343)
T ss_pred             cceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCC-E
Confidence            8999999987544  455432    2333444445777999888 7899999999999986 9999999999999999 5


Q ss_pred             EEEEcCChHHHHHHH-HcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccC
Q 048013          123 IVIVDVDDYRLSVAK-KLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       123 vv~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      ||....+++|.+.++ ++|.+..++|.+. .+..+.+.+   ....|+|+.||++|+ .++...+..|+.+||++.+|+.
T Consensus       181 VVGsaGS~EKv~ll~~~~G~d~afNYK~e-~~~~~aL~r---~~P~GIDiYfeNVGG-~~lDavl~nM~~~gri~~CG~I  255 (343)
T KOG1196|consen  181 VVGSAGSKEKVDLLKTKFGFDDAFNYKEE-SDLSAALKR---CFPEGIDIYFENVGG-KMLDAVLLNMNLHGRIAVCGMI  255 (343)
T ss_pred             EEEecCChhhhhhhHhccCCccceeccCc-cCHHHHHHH---hCCCcceEEEeccCc-HHHHHHHHhhhhccceEeeeee
Confidence            999999999999876 4799999999753 366666665   367899999999999 8899999999999999999987


Q ss_pred             CC
Q 048013          202 HR  203 (216)
Q Consensus       202 ~~  203 (216)
                      ++
T Consensus       256 Sq  257 (343)
T KOG1196|consen  256 SQ  257 (343)
T ss_pred             hh
Confidence            65

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.80  E-value=8.4e-18  Score=136.74  Aligned_cols=172  Identities=28%  Similarity=0.400  Sum_probs=138.3

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-hh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-EP   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~   80 (216)
                      +|++++.+++||+|+..+...+                       ...|++++|+.++++.++++|+++++++++.+ .+
T Consensus        72 ~G~~~~~~~~Gd~V~~~~~~~~-----------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  128 (328)
T cd08268          72 VGAGVTGFAVGDRVSVIPAADL-----------------------GQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQ  128 (328)
T ss_pred             eCCCCCcCCCCCEEEecccccc-----------------------CCCccceEEEEechHhcEeCCCCCCHHHHHHhhhH
Confidence            5788888999999987532110                       24589999999999999999999998887744 47


Q ss_pred             hHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           81 LSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        81 ~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      +.++|.++ +...+.++++++|+|+ |++|++++++++..|++ ++.++.+.++.+.++++|.+.+++.+  ..+..+.+
T Consensus       129 ~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~-v~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~  205 (328)
T cd08268         129 YLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGAT-VIATTRTSEKRDALLALGAAHVIVTD--EEDLVAEV  205 (328)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHcCCCEEEecC--CccHHHHH
Confidence            88899988 4577889999999996 99999999999999995 88888888888888888887766542  23444444


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      .+..  .+.++|++++++++ .....++++++++|+++.+|...
T Consensus       206 ~~~~--~~~~~d~vi~~~~~-~~~~~~~~~l~~~g~~v~~g~~~  246 (328)
T cd08268         206 LRIT--GGKGVDVVFDPVGG-PQFAKLADALAPGGTLVVYGALS  246 (328)
T ss_pred             HHHh--CCCCceEEEECCch-HhHHHHHHhhccCCEEEEEEeCC
Confidence            4432  35679999999999 67788999999999999998643

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.80  E-value=8.8e-18  Score=136.25  Aligned_cols=168  Identities=33%  Similarity=0.552  Sum_probs=137.5

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhc-chh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAM-CEP   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~-~~~   80 (216)
                      +|+++..+++||+|+..+                            ..|+|++|+.++.+.++++|+++++.+++. ..+
T Consensus        72 ~g~~~~~~~~G~~V~~~~----------------------------~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~  123 (323)
T cd08241          72 VGEGVTGFKVGDRVVALT----------------------------GQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVT  123 (323)
T ss_pred             eCCCCCCCCCCCEEEEec----------------------------CCceeEEEEEcCHHHceeCCCCCCHHHHhhhhhH
Confidence            567777889999998751                            258999999999999999999998887764 457


Q ss_pred             hHHHHHHHH-HcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           81 LSVGVHACR-RANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        81 ~~~a~~~l~-~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      +.+++.++. ...++++++++|+|+ |++|++++++++..|++ ++.++.+.++.+.++++|.+..++..  ..++.+.+
T Consensus       124 ~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~-v~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~i  200 (323)
T cd08241         124 YGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGAR-VIAAASSEEKLALARALGADHVIDYR--DPDLRERV  200 (323)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCE-EEEEeCCHHHHHHHHHcCCceeeecC--CccHHHHH
Confidence            788888884 677899999999997 99999999999999996 88888888888888889987766532  24555555


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      .++  +.+.++|.+++++|+ .....++++++++|+++.+|....
T Consensus       201 ~~~--~~~~~~d~v~~~~g~-~~~~~~~~~~~~~g~~v~~~~~~~  242 (323)
T cd08241         201 KAL--TGGRGVDVVYDPVGG-DVFEASLRSLAWGGRLLVIGFASG  242 (323)
T ss_pred             HHH--cCCCCcEEEEECccH-HHHHHHHHhhccCCEEEEEccCCC
Confidence            554  245689999999998 777889999999999999986443

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.80  E-value=6.7e-18  Score=137.31  Aligned_cols=169  Identities=30%  Similarity=0.345  Sum_probs=135.6

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-h
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-P   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~   80 (216)
                      +|+++..+++||+|+.....                       .....|+|++|+.+++++++++|+++++..++.++ .
T Consensus        72 ~G~~~~~~~~Gd~V~~~~~~-----------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~  128 (326)
T cd08272          72 VGEGVTRFRVGDEVYGCAGG-----------------------LGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLV  128 (326)
T ss_pred             eCCCCCCCCCCCEEEEccCC-----------------------cCCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHH
Confidence            57778889999999875210                       00135899999999999999999999988877554 6


Q ss_pred             hHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           81 LSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        81 ~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      +.++|+++ +..+++++++++|+|+ |.+|++++++++..|++ ++.++++ ++.+.++++|.+.+++..  .. +.+.+
T Consensus       129 ~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~-v~~~~~~-~~~~~~~~~g~~~~~~~~--~~-~~~~~  203 (326)
T cd08272         129 GITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGAR-VYATASS-EKAAFARSLGADPIIYYR--ET-VVEYV  203 (326)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCE-EEEEech-HHHHHHHHcCCCEEEecc--hh-HHHHH
Confidence            77888887 6788999999999985 99999999999999996 7888777 888888889987766632  22 44445


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccC
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      .++  +.++++|.+++++++ ......+++++++|+++.+|..
T Consensus       204 ~~~--~~~~~~d~v~~~~~~-~~~~~~~~~l~~~g~~v~~~~~  243 (326)
T cd08272         204 AEH--TGGRGFDVVFDTVGG-ETLDASFEAVALYGRVVSILGG  243 (326)
T ss_pred             HHh--cCCCCCcEEEECCCh-HHHHHHHHHhccCCEEEEEecC
Confidence            544  245689999999998 6678899999999999998754

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.79  E-value=1.5e-17  Score=135.95  Aligned_cols=163  Identities=24%  Similarity=0.287  Sum_probs=130.9

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-hh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-EP   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~   80 (216)
                      +|+++..|++||+|+..+                            ..|+|++|+.++.+.++++|+++++++++.+ .+
T Consensus        72 vG~~v~~~~~Gd~V~~~~----------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~  123 (331)
T cd08273          72 LGSGVTGFEVGDRVAALT----------------------------RVGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLN  123 (331)
T ss_pred             eCCCCccCCCCCEEEEeC----------------------------CCcceeeEEEechHHeEECCCCCCHHHHHhhhhH
Confidence            688888999999998751                            2488999999999999999999999888744 47


Q ss_pred             hHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           81 LSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        81 ~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      +.++|+++ +...+.++++++|+|+ |++|++++++++..|++ |+.+.. +++.+.++++|... +..  ...++.+. 
T Consensus       124 ~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~-v~~~~~-~~~~~~~~~~g~~~-~~~--~~~~~~~~-  197 (331)
T cd08273         124 YVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAE-VYGTAS-ERNHAALRELGATP-IDY--RTKDWLPA-  197 (331)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCCE-EEEEeC-HHHHHHHHHcCCeE-EcC--CCcchhhh-
Confidence            88899988 4477899999999996 99999999999999995 777776 77888888888653 232  22233222 


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                       +.   .++++|++++++++. .....+++++++|+++.+|....
T Consensus       198 -~~---~~~~~d~vl~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~  237 (331)
T cd08273         198 -ML---TPGGVDVVFDGVGGE-SYEESYAALAPGGTLVCYGGNSS  237 (331)
T ss_pred             -hc---cCCCceEEEECCchH-HHHHHHHHhcCCCEEEEEccCCC
Confidence             22   345799999999984 47899999999999999986543

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.78  E-value=4.7e-17  Score=132.81  Aligned_cols=166  Identities=22%  Similarity=0.294  Sum_probs=126.7

Q ss_pred             CCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-hhHH
Q 048013            5 EVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-PLSV   83 (216)
Q Consensus         5 ~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~   83 (216)
                      +++.+++||+|+.....                     .+ ....|+|++|+.++.+.++++|+++++++++.+. .+.+
T Consensus        73 ~~~~~~~Gd~V~~~~~~---------------------~~-~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~t  130 (324)
T cd08288          73 SSPRFKPGDRVVLTGWG---------------------VG-ERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFT  130 (324)
T ss_pred             CCCCCCCCCEEEECCcc---------------------CC-CCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHH
Confidence            45668999999874210                     00 0135899999999999999999999998888654 5556


Q ss_pred             HHHHHH---HcCCC-CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           84 GVHACR---RANIG-PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        84 a~~~l~---~~~~~-~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      ++.++.   ..... ++++++|+|+ |++|++++++|+.+|++ +++++.++++.+.++++|++.++++++    ....+
T Consensus       131 a~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~~-vi~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~  205 (324)
T cd08288         131 AMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGYE-VVASTGRPEEADYLRSLGASEIIDRAE----LSEPG  205 (324)
T ss_pred             HHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHhcCCCEEEEcch----hhHhh
Confidence            665543   44455 5789999997 99999999999999996 888888889999999999988776432    22223


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccC
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      ..+   ...++|.++|++++ ......+..++.+|+++.+|..
T Consensus       206 ~~~---~~~~~~~~~d~~~~-~~~~~~~~~~~~~g~~~~~G~~  244 (324)
T cd08288         206 RPL---QKERWAGAVDTVGG-HTLANVLAQTRYGGAVAACGLA  244 (324)
T ss_pred             hhh---ccCcccEEEECCcH-HHHHHHHHHhcCCCEEEEEEec
Confidence            332   34468999999998 5667888889999999999854

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.78  E-value=4.3e-17  Score=132.69  Aligned_cols=168  Identities=26%  Similarity=0.392  Sum_probs=133.8

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-hh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-EP   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~   80 (216)
                      +|++++.+++||+|+..+..                         ...|+|++|+.++++.++++|+++++.+++.+ .+
T Consensus        71 ~G~~~~~~~~Gd~V~~~~~~-------------------------~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~  125 (325)
T cd08271          71 VGAKVTGWKVGDRVAYHASL-------------------------ARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCA  125 (325)
T ss_pred             eCCCCCcCCCCCEEEeccCC-------------------------CCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhh
Confidence            57788889999999975321                         13589999999999999999999998888754 47


Q ss_pred             hHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           81 LSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        81 ~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      +.++++++ +..+++++++++|+|+ |++|++++++++..|++ ++++. ++++.+.+.++|.+.+++.  ...++.+.+
T Consensus       126 ~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~-v~~~~-~~~~~~~~~~~g~~~~~~~--~~~~~~~~~  201 (325)
T cd08271         126 GLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLR-VITTC-SKRNFEYVKSLGADHVIDY--NDEDVCERI  201 (325)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCE-EEEEE-cHHHHHHHHHcCCcEEecC--CCccHHHHH
Confidence            88899988 5577889999999997 79999999999999996 66665 6677788888998776653  233444455


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccC
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      .++  ..++++|.+++++++ ......+++++++|+++.+|..
T Consensus       202 ~~~--~~~~~~d~vi~~~~~-~~~~~~~~~l~~~G~~v~~~~~  241 (325)
T cd08271         202 KEI--TGGRGVDAVLDTVGG-ETAAALAPTLAFNGHLVCIQGR  241 (325)
T ss_pred             HHH--cCCCCCcEEEECCCc-HhHHHHHHhhccCCEEEEEcCC
Confidence            544  245689999999998 4556789999999999988743

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.78  E-value=2.7e-17  Score=133.52  Aligned_cols=168  Identities=32%  Similarity=0.398  Sum_probs=129.3

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-h
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-E   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~   79 (216)
                      ++|+++..+++||+|+.....                         ...|+|++|+.++.+.++++|+++++++++.+ .
T Consensus        72 ~~G~~v~~~~~Gd~V~~~~~~-------------------------~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~  126 (319)
T cd08267          72 AVGSGVTRFKVGDEVFGRLPP-------------------------KGGGALAEYVVAPESGLAKKPEGVSFEEAAALPV  126 (319)
T ss_pred             EeCCCCCCCCCCCEEEEeccC-------------------------CCCceeeEEEEechhheEECCCCCCHHHHHhhhh
Confidence            368888889999999875221                         13589999999999999999999998887755 4


Q ss_pred             hhHHHHHHHHH-cCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           80 PLSVGVHACRR-ANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        80 ~~~~a~~~l~~-~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                      ++.++|++++. ..++++++++|+|+ |++|++++++++.+|++ +++++.+ ++.+.++++|.+.+++...  .++.  
T Consensus       127 ~~~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~-v~~~~~~-~~~~~~~~~g~~~~~~~~~--~~~~--  200 (319)
T cd08267         127 AGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAH-VTGVCST-RNAELVRSLGADEVIDYTT--EDFV--  200 (319)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCE-EEEEeCH-HHHHHHHHcCCCEeecCCC--CCcc--
Confidence            77889999854 45899999999996 99999999999999995 7777665 7778888999877665432  2222  


Q ss_pred             HHHHHHHcCCCccEEEEcCCCH-HHHHHHHHHhhcCCEEEEeccCC
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFN-KTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                       ...  +.++++|++++++++. ......+..++++|+++.+|...
T Consensus       201 -~~~--~~~~~~d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~~~  243 (319)
T cd08267         201 -ALT--AGGEKYDVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGP  243 (319)
T ss_pred             -hhc--cCCCCCcEEEECCCchHHHHHHhhhccCCCCEEEEecccc
Confidence             111  3466899999999952 22233444499999999998654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.76  E-value=6.3e-17  Score=130.54  Aligned_cols=165  Identities=27%  Similarity=0.354  Sum_probs=130.9

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-h
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-P   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~   80 (216)
                      +|+++..+++||+|+..+..                         ...|+|++|+.+++..++++|+++++..++.+. .
T Consensus        74 ~G~~~~~~~~G~~V~~~~~~-------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  128 (309)
T cd05289          74 VGPGVTGFKVGDEVFGMTPF-------------------------TRGGAYAEYVVVPADELALKPANLSFEEAAALPLA  128 (309)
T ss_pred             eCCCCCCCCCCCEEEEccCC-------------------------CCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHH
Confidence            57778889999999875211                         125899999999999999999999988877554 6


Q ss_pred             hHHHHHHHHH-cCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           81 LSVGVHACRR-ANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        81 ~~~a~~~l~~-~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      +.+++++++. ..+.++++++|+|+ |.+|++++++++..|++ +++++.++ +.+.+++++.+..+....  .++.+  
T Consensus       129 ~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~-v~~~~~~~-~~~~~~~~g~~~~~~~~~--~~~~~--  202 (309)
T cd05289         129 GLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGAR-VIATASAA-NADFLRSLGADEVIDYTK--GDFER--  202 (309)
T ss_pred             HHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCE-EEEEecch-hHHHHHHcCCCEEEeCCC--Cchhh--
Confidence            6788888854 45889999999996 99999999999999996 77777666 777788899876665322  22222  


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                          ...++++|++++++++ .....++++++++|+++.+|...
T Consensus       203 ----~~~~~~~d~v~~~~~~-~~~~~~~~~l~~~g~~v~~g~~~  241 (309)
T cd05289         203 ----AAAPGGVDAVLDTVGG-ETLARSLALVKPGGRLVSIAGPP  241 (309)
T ss_pred             ----ccCCCCceEEEECCch-HHHHHHHHHHhcCcEEEEEcCCC
Confidence                1245679999999998 57789999999999999998543

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.76  E-value=1.3e-16  Score=130.56  Aligned_cols=165  Identities=28%  Similarity=0.409  Sum_probs=130.5

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-h
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-P   80 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~   80 (216)
                      +|+++..+++||+|+..                            ...|+|++|+.++.+.++++|+++++.+++.+. +
T Consensus        71 ~g~~~~~~~~G~~V~~~----------------------------~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~  122 (337)
T cd08275          71 VGEGVKDFKVGDRVMGL----------------------------TRFGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVN  122 (337)
T ss_pred             ECCCCcCCCCCCEEEEe----------------------------cCCCeeeeEEEecHHHeEECCCCCCHHHHhhhhHH
Confidence            57778889999999875                            134899999999999999999999988887554 7


Q ss_pred             hHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           81 LSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVD-VDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        81 ~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                      +.++|+++ +...++++++++|+|+ |++|++++++++.. .. +.+++ .++++.+.++++|.+.+++..  ..++.+.
T Consensus       123 ~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~-~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~  198 (337)
T cd08275         123 YLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTV-PN-VTVVGTASASKHEALKENGVTHVIDYR--TQDYVEE  198 (337)
T ss_pred             HHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHc-cC-cEEEEeCCHHHHHHHHHcCCcEEeeCC--CCcHHHH
Confidence            88899987 5677899999999997 99999999999998 21 23332 345577778889987766532  3455555


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +.++.   ++++|+++|++|+ ......+++++++|+++.+|...
T Consensus       199 ~~~~~---~~~~d~v~~~~g~-~~~~~~~~~l~~~g~~v~~g~~~  239 (337)
T cd08275         199 VKKIS---PEGVDIVLDALGG-EDTRKSYDLLKPMGRLVVYGAAN  239 (337)
T ss_pred             HHHHh---CCCceEEEECCcH-HHHHHHHHhhccCcEEEEEeecC
Confidence            55542   4679999999998 56788999999999999998543

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.66  E-value=1.4e-15  Score=108.18  Aligned_cols=105  Identities=30%  Similarity=0.597  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHH
Q 048013          106 PIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTA  185 (216)
Q Consensus       106 ~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~  185 (216)
                      ++|++++|+|+.+|+ +|+++++++++++.++++|++.+++++.  .++.+.++++.  .++++|++|||+|....++.+
T Consensus         1 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~~~~~Ga~~~~~~~~--~~~~~~i~~~~--~~~~~d~vid~~g~~~~~~~~   75 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGA-KVIATDRSEEKLELAKELGADHVIDYSD--DDFVEQIRELT--GGRGVDVVIDCVGSGDTLQEA   75 (130)
T ss_dssp             HHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTESEEEETTT--SSHHHHHHHHT--TTSSEEEEEESSSSHHHHHHH
T ss_pred             ChHHHHHHHHHHcCC-EEEEEECCHHHHHHHHhhcccccccccc--ccccccccccc--ccccceEEEEecCcHHHHHHH
Confidence            589999999999996 6999999999999999999999988643  45777777763  456899999999977999999


Q ss_pred             HHHhhcCCEEEEeccCC-CCCcccchhhhhc
Q 048013          186 LSATRAGGKVCLVGMGH-REMTVPLTPAAAS  215 (216)
Q Consensus       186 ~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~  215 (216)
                      +++++++|+++++|+.. ...+++...+++|
T Consensus        76 ~~~l~~~G~~v~vg~~~~~~~~~~~~~~~~~  106 (130)
T PF00107_consen   76 IKLLRPGGRIVVVGVYGGDPISFNLMNLMFK  106 (130)
T ss_dssp             HHHEEEEEEEEEESSTSTSEEEEEHHHHHHT
T ss_pred             HHHhccCCEEEEEEccCCCCCCCCHHHHHhC
Confidence            99999999999999877 5577777777654

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.62  E-value=2.6e-15  Score=133.95  Aligned_cols=160  Identities=16%  Similarity=0.234  Sum_probs=127.5

Q ss_pred             CccceeEEecCCceEECCCCCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEE
Q 048013           50 GCLANQVVHPADLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMG-SGPIGLVTMLAARAFGAPRIVIV  126 (216)
Q Consensus        50 g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~G-ag~~G~~~i~~a~~~g~~~vv~~  126 (216)
                      -++++-+.++.+.+|.+|++.+.++|+.++ -++|+|+++ .....++|++|||++ +|++|+++|.+|.+.|+. |+.+
T Consensus      1505 ksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~~-VFTT 1583 (2376)
T KOG1202|consen 1505 KSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGCT-VFTT 1583 (2376)
T ss_pred             hhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCCE-EEEe
Confidence            568888899999999999999999999988 678999998 778899999999995 699999999999999995 9999


Q ss_pred             cCChHHHHHHHH-cCCCEEEe-CCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEec-cC-C
Q 048013          127 DVDDYRLSVAKK-LGADNIVK-VSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG-MG-H  202 (216)
Q Consensus       127 ~~~~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g-~~-~  202 (216)
                      ..+++|++++.+ |..-.-.+ -++++.+++.-+..  .+.|+|+|+|++.... +.++..+++|+-+||+.-+| +. +
T Consensus      1584 VGSaEKRefL~~rFPqLqe~~~~NSRdtsFEq~vl~--~T~GrGVdlVLNSLae-EkLQASiRCLa~~GRFLEIGKfDLS 1660 (2376)
T KOG1202|consen 1584 VGSAEKREFLLKRFPQLQETNFANSRDTSFEQHVLW--HTKGRGVDLVLNSLAE-EKLQASIRCLALHGRFLEIGKFDLS 1660 (2376)
T ss_pred             cCcHHHHHHHHHhchhhhhhcccccccccHHHHHHH--HhcCCCeeeehhhhhH-HHHHHHHHHHHhcCeeeeecceecc
Confidence            999999988755 43221111 12444566655544  3689999999999998 88899999999999999998 21 2


Q ss_pred             CCCcccchhhh
Q 048013          203 REMTVPLTPAA  213 (216)
Q Consensus       203 ~~~~~~~~~~~  213 (216)
                      .+.++-|..++
T Consensus      1661 qNspLGMavfL 1671 (2376)
T KOG1202|consen 1661 QNSPLGMAVFL 1671 (2376)
T ss_pred             cCCcchhhhhh
Confidence            23444444443

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.36  E-value=1.7e-11  Score=104.84  Aligned_cols=108  Identities=17%  Similarity=0.259  Sum_probs=82.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEE-EeCCCCc-----------ccHHHHHHH
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNI-VKVSTNL-----------QDIAEEVEK  160 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~-~~~~~~~-----------~~~~~~~~~  160 (216)
                      ..++++|+|+|+|.+|+++++.|+.+|+ .|+++|.++++++.++++|++.+ ++..+..           +++.+...+
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~  240 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA  240 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence            4679999999999999999999999999 59999999999999999999854 3321110           122222222


Q ss_pred             HHHHcCCCccEEEEcCCCH-----HH-HHHHHHHhhcCCEEEEeccC
Q 048013          161 IQKAMGTGIDVSFDCAGFN-----KT-MSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~-----~~-~~~~~~~l~~~G~~v~~g~~  201 (216)
                      ......+++|++|+|++.+     .. .+.+++.++++|+++++|..
T Consensus       241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~  287 (509)
T PRK09424        241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAE  287 (509)
T ss_pred             HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccC
Confidence            2111125799999999963     24 49999999999999999975

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.26  E-value=3.1e-12  Score=88.25  Aligned_cols=65  Identities=42%  Similarity=0.764  Sum_probs=59.0

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEEC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKL   66 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i   66 (216)
                      ++|++|+.|++||||+..+...|++|.+|..+..++|.+...++. ..+|+|+||+.+|+++++++
T Consensus        45 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~g~-~~~G~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   45 AVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNLCPNPEVLGL-GLDGGFAEYVVVPARNLVPV  109 (109)
T ss_dssp             EESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGGTTTBEETTT-SSTCSSBSEEEEEGGGEEEE
T ss_pred             eeccccccccccceeeeecccCccCchhhcCCccccCCCCCEeEc-CCCCcccCeEEEehHHEEEC
Confidence            478999999999999999998999999999999999998888887 47899999999999999874

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.09  E-value=2.1e-09  Score=89.90  Aligned_cols=111  Identities=16%  Similarity=0.279  Sum_probs=85.8

Q ss_pred             HHHH-HHcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHH
Q 048013           85 VHAC-RRAN-IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        85 ~~~l-~~~~-~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  162 (216)
                      +.++ +..+ ..+|++|+|+|+|++|+.+++.++.+|+ +|++++.++.+.+.++.+|+..+ .       ..    +..
T Consensus       189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~~-~-------~~----e~v  255 (413)
T cd00401         189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEVM-T-------ME----EAV  255 (413)
T ss_pred             HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEEc-c-------HH----HHH
Confidence            4454 3333 4689999999999999999999999999 48999999999999999988432 1       11    111


Q ss_pred             HHcCCCccEEEEcCCCHHHHHHH-HHHhhcCCEEEEeccCCCCCcccchhhhh
Q 048013          163 KAMGTGIDVSFDCAGFNKTMSTA-LSATRAGGKVCLVGMGHREMTVPLTPAAA  214 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~~~~~~~~-~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  214 (216)
                          .++|++|+++|....+... ++.++++|+++.+|..  +.++++..+..
T Consensus       256 ----~~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~--~~eId~~~L~~  302 (413)
T cd00401         256 ----KEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHF--DVEIDVKGLKE  302 (413)
T ss_pred             ----cCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCC--CCccCHHHHHh
Confidence                2589999999997777654 9999999999999954  45666665543

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.91  E-value=2.3e-08  Score=85.61  Aligned_cols=108  Identities=19%  Similarity=0.269  Sum_probs=81.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCc-------------ccHHHHHHH
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNL-------------QDIAEEVEK  160 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~-------------~~~~~~~~~  160 (216)
                      .++++++|+|+|.+|+++++.++.+|+. |++++++.++++.++++|.+.+.. +..+             +++.+...+
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~-V~v~d~~~~rle~a~~lGa~~v~v-~~~e~g~~~~gYa~~~s~~~~~~~~~  239 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAI-VRAFDTRPEVKEQVQSMGAEFLEL-DFKEEGGSGDGYAKVMSEEFIAAEME  239 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHcCCeEEec-cccccccccccceeecCHHHHHHHHH
Confidence            4678999999999999999999999995 999999999999999999876432 1111             122222233


Q ss_pred             HHHHcCCCccEEEEcC---CCHH---HHHHHHHHhhcCCEEEEeccCCC
Q 048013          161 IQKAMGTGIDVSFDCA---GFNK---TMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~---g~~~---~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      +.....+++|++|+++   |.+.   ..+..++.|+++++++.++...+
T Consensus       240 ~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~G  288 (511)
T TIGR00561       240 LFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQG  288 (511)
T ss_pred             HHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCC
Confidence            3323356799999999   5422   55788999999999999986543

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.81  E-value=2.8e-07  Score=72.87  Aligned_cols=133  Identities=20%  Similarity=0.321  Sum_probs=88.1

Q ss_pred             ccceeEEecCCceEECCCCCCchhhhcchhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           51 CLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        51 ~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      .|.+|.. +...++.+++.+++..+..- +.....+.+... +.++++||.+|+|. |.+++.+++ .|...|+++|.++
T Consensus        78 ~~~~~~~-~~~~~i~i~p~~afgtg~h~-tt~~~l~~l~~~-~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDis~  152 (250)
T PRK00517         78 SWEDPPD-PDEINIELDPGMAFGTGTHP-TTRLCLEALEKL-VLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDIDP  152 (250)
T ss_pred             CCcCCCC-CCeEEEEECCCCccCCCCCH-HHHHHHHHHHhh-cCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEECCH
Confidence            4566644 77788999999988876622 222233344322 56889999999987 877776554 6776699999999


Q ss_pred             HHHHHHHHc----CCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCH---HHHHHHHHHhhcCCEEEEeccCCC
Q 048013          131 YRLSVAKKL----GADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFN---KTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       131 ~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~---~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      ...+.+++.    +....+...               .....||+|+.+....   ..++.+.+.|+|+|++++.|....
T Consensus       153 ~~l~~A~~n~~~~~~~~~~~~~---------------~~~~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~~~  217 (250)
T PRK00517        153 QAVEAARENAELNGVELNVYLP---------------QGDLKADVIVANILANPLLELAPDLARLLKPGGRLILSGILEE  217 (250)
T ss_pred             HHHHHHHHHHHHcCCCceEEEc---------------cCCCCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcHh
Confidence            888776542    221111100               0111599999877652   345678888999999999886543

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.75  E-value=2.3e-07  Score=78.10  Aligned_cols=104  Identities=21%  Similarity=0.297  Sum_probs=78.9

Q ss_pred             HHHHHHHc-CC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHH
Q 048013           84 GVHACRRA-NI-GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKI  161 (216)
Q Consensus        84 a~~~l~~~-~~-~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  161 (216)
                      .|+++... ++ ..+++++|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|.. +.       +    +.++
T Consensus       198 ~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~-v~-------~----l~ea  264 (425)
T PRK05476        198 LLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFR-VM-------T----MEEA  264 (425)
T ss_pred             hHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCE-ec-------C----HHHH
Confidence            45666443 44 389999999999999999999999999 599999998877666655653 21       1    1122


Q ss_pred             HHHcCCCccEEEEcCCCHHHHH-HHHHHhhcCCEEEEeccCCCC
Q 048013          162 QKAMGTGIDVSFDCAGFNKTMS-TALSATRAGGKVCLVGMGHRE  204 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g~~~~~~-~~~~~l~~~G~~v~~g~~~~~  204 (216)
                      .    .++|++|+++|....+. ..+..+++++.++..|....+
T Consensus       265 l----~~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d~E  304 (425)
T PRK05476        265 A----ELGDIFVTATGNKDVITAEHMEAMKDGAILANIGHFDNE  304 (425)
T ss_pred             H----hCCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCCCc
Confidence            1    26899999999877665 688999999999999965543

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.69  E-value=7e-08  Score=78.64  Aligned_cols=108  Identities=23%  Similarity=0.306  Sum_probs=80.8

Q ss_pred             CceEECCCCCCchhhhcchhhHHHHHHHHHcCC----CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHH-HH
Q 048013           61 DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANI----GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRL-SV  135 (216)
Q Consensus        61 ~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~----~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~-~~  135 (216)
                      +..+++|+.+..+.+....++++++++++....    .++++|+|+|+|.+|..+++.++..|.+.|++++++.++. ++
T Consensus       139 ~~a~~~~k~vr~et~i~~~~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~l  218 (311)
T cd05213         139 QKAIKVGKRVRTETGISRGAVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEEL  218 (311)
T ss_pred             HHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            345778888888888888888888888754332    4789999999999999999999988877799999998775 56


Q ss_pred             HHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHH
Q 048013          136 AKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKT  181 (216)
Q Consensus       136 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~  181 (216)
                      ++++|.. ....    .+    +.+..    ...|+||.+++.+..
T Consensus       219 a~~~g~~-~~~~----~~----~~~~l----~~aDvVi~at~~~~~  251 (311)
T cd05213         219 AKELGGN-AVPL----DE----LLELL----NEADVVISATGAPHY  251 (311)
T ss_pred             HHHcCCe-EEeH----HH----HHHHH----hcCCEEEECCCCCch
Confidence            7778873 2221    11    22211    258999999998554

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.68  E-value=4.8e-07  Score=73.16  Aligned_cols=99  Identities=17%  Similarity=0.218  Sum_probs=77.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .+++++|+|+|.+|..+++.++.+|+ +|++++++.++.+.++++|...+ .+    .    .+.+.    -..+|+||+
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~~~-~~----~----~l~~~----l~~aDiVI~  216 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLSPF-HL----S----ELAEE----VGKIDIIFN  216 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeee-cH----H----HHHHH----hCCCCEEEE
Confidence            68999999999999999999999999 59999999888888888886532 11    1    12222    136999999


Q ss_pred             cCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcc
Q 048013          175 CAGFNKTMSTALSATRAGGKVCLVGMGHREMTV  207 (216)
Q Consensus       175 ~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~  207 (216)
                      +++.....+..++.+++++.++.++..++..++
T Consensus       217 t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd~  249 (296)
T PRK08306        217 TIPALVLTKEVLSKMPPEALIIDLASKPGGTDF  249 (296)
T ss_pred             CCChhhhhHHHHHcCCCCcEEEEEccCCCCcCe
Confidence            998744557788899999999999876655544

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.61  E-value=2.4e-08  Score=84.46  Aligned_cols=162  Identities=19%  Similarity=0.228  Sum_probs=97.5

Q ss_pred             EEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchhhHHHHHHH----H
Q 048013           14 RVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHAC----R   89 (216)
Q Consensus        14 ~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l----~   89 (216)
                      +|+..+.. |+.|.+|    ++.|......|. ..++.|++++.+++ .+..- ..++.      .+.+.++.++    +
T Consensus       108 ~V~GE~qI-~gQvk~a----~~~a~~~~~~g~-~l~~lf~~a~~~~k-~vr~~-t~i~~------~~vSv~~~Av~la~~  173 (417)
T TIGR01035       108 MVVGETQI-LGQVKNA----YKVAQEEKTVGK-VLERLFQKAFSVGK-RVRTE-TDISA------GAVSISSAAVELAER  173 (417)
T ss_pred             hhcCChHH-HHHHHHH----HHHHHHcCCchH-HHHHHHHHHHHHhh-hhhhh-cCCCC------CCcCHHHHHHHHHHH
Confidence            55666666 7778877    444444433333 35688999988876 33320 01110      1222333332    3


Q ss_pred             HcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHH-HHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           90 RANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLS-VAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        90 ~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      .....++++++|+|+|.+|..+++.++..|+..|++++++.++.+ .+++++... +..    .+    +.+.    -.+
T Consensus       174 ~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~-i~~----~~----l~~~----l~~  240 (417)
T TIGR01035       174 IFGSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEA-VKF----ED----LEEY----LAE  240 (417)
T ss_pred             HhCCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeE-eeH----HH----HHHH----Hhh
Confidence            344567899999999999999999999999667999999988754 666777642 221    11    2221    126


Q ss_pred             ccEEEEcCCCHHHH--HHHHHH-hhcC-C--EEEEeccCC
Q 048013          169 IDVSFDCAGFNKTM--STALSA-TRAG-G--KVCLVGMGH  202 (216)
Q Consensus       169 ~d~vi~~~g~~~~~--~~~~~~-l~~~-G--~~v~~g~~~  202 (216)
                      +|+||+|++.+..+  ...++. ++.. +  .++.++.+.
T Consensus       241 aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr  280 (417)
T TIGR01035       241 ADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPR  280 (417)
T ss_pred             CCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            99999999875432  223333 2221 2  566777543

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.51  E-value=1.8e-06  Score=72.35  Aligned_cols=92  Identities=21%  Similarity=0.279  Sum_probs=72.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      ...+++|+|+|.|.+|+.+++.++.+|++ |++++.+..+...+...|.. +..       ..+.   +     .+.|++
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~-ViV~d~dp~r~~~A~~~G~~-v~~-------leea---l-----~~aDVV  254 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGAR-VIVTEVDPIRALEAAMDGFR-VMT-------MEEA---A-----KIGDIF  254 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcCE-EEEEeCChhhHHHHHhcCCE-eCC-------HHHH---H-----hcCCEE
Confidence            36899999999999999999999999995 99999888776666666653 211       1111   1     257999


Q ss_pred             EEcCCCHHHHH-HHHHHhhcCCEEEEeccC
Q 048013          173 FDCAGFNKTMS-TALSATRAGGKVCLVGMG  201 (216)
Q Consensus       173 i~~~g~~~~~~-~~~~~l~~~G~~v~~g~~  201 (216)
                      |+++|....+. ..+..+++++.++..|..
T Consensus       255 ItaTG~~~vI~~~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       255 ITATGNKDVIRGEHFENMKDGAIVANIGHF  284 (406)
T ss_pred             EECCCCHHHHHHHHHhcCCCCcEEEEECCC
Confidence            99999977665 588899999999999854

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02494 adenosylhomocysteinase

Probab=98.50  E-value=2.2e-06  Score=72.63  Aligned_cols=92  Identities=18%  Similarity=0.274  Sum_probs=72.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      ..|++++|+|.|.+|+.+++.++.+|+ +|+++++++.+...+...|...+        +..    ++.    ...|+++
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~vv--------~le----Eal----~~ADVVI  314 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQVL--------TLE----DVV----SEADIFV  314 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCeec--------cHH----HHH----hhCCEEE
Confidence            579999999999999999999999999 49999988877666666665421        111    111    2489999


Q ss_pred             EcCCCHHHH-HHHHHHhhcCCEEEEeccCC
Q 048013          174 DCAGFNKTM-STALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       174 ~~~g~~~~~-~~~~~~l~~~G~~v~~g~~~  202 (216)
                      .++|+...+ ...+..|++++.++.+|...
T Consensus       315 ~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~  344 (477)
T PLN02494        315 TTTGNKDIIMVDHMRKMKNNAIVCNIGHFD  344 (477)
T ss_pred             ECCCCccchHHHHHhcCCCCCEEEEcCCCC
Confidence            999986654 78999999999999999643

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=2.3e-06  Score=64.83  Aligned_cols=105  Identities=18%  Similarity=0.228  Sum_probs=78.3

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHH----HHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           83 VGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRL----SVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        83 ~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      ....+++...++++++||-+|+|. |..++-+++..+  +|+.+++.++-.    +.++.+|..++..... +.     .
T Consensus        60 ~vA~m~~~L~~~~g~~VLEIGtGs-GY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g-DG-----~  130 (209)
T COG2518          60 MVARMLQLLELKPGDRVLEIGTGS-GYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHG-DG-----S  130 (209)
T ss_pred             HHHHHHHHhCCCCCCeEEEECCCc-hHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC-Cc-----c
Confidence            334566778899999999999885 899999999887  599999998743    3456688866544221 11     0


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEe
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~  198 (216)
                      +-+  ....+||.|+-+.+.+...+..++.|+++|+++..
T Consensus       131 ~G~--~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~P  168 (209)
T COG2518         131 KGW--PEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIP  168 (209)
T ss_pred             cCC--CCCCCcCEEEEeeccCCCCHHHHHhcccCCEEEEE
Confidence            111  12468999999999878889999999999999855

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=98.47  E-value=2.6e-06  Score=68.55  Aligned_cols=118  Identities=15%  Similarity=0.182  Sum_probs=81.1

Q ss_pred             hcchhhHHHHHHH----HHcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCC
Q 048013           76 AMCEPLSVGVHAC----RRAN-IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTN  150 (216)
Q Consensus        76 a~~~~~~~a~~~l----~~~~-~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~  150 (216)
                      +.....+++.+++    +... --.+++++|+|.|.+|..+++.++.+|+ +|++.+++.++...+.+++...+ .    
T Consensus       126 a~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~~~~-~----  199 (287)
T TIGR02853       126 AIYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGLIPF-P----  199 (287)
T ss_pred             EEEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeee-c----
Confidence            3344455555444    2221 2357899999999999999999999999 59999999887777766665422 1    


Q ss_pred             cccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcc
Q 048013          151 LQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTV  207 (216)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~  207 (216)
                         + +.+.+.    -..+|++|++++..-.....+..++++..++.++..+...++
T Consensus       200 ---~-~~l~~~----l~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf  248 (287)
T TIGR02853       200 ---L-NKLEEK----VAEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKPGGTDF  248 (287)
T ss_pred             ---H-HHHHHH----hccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCH
Confidence               1 112222    136999999998633335677888999999999876655544

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=98.45  E-value=8.9e-06  Score=62.86  Aligned_cols=115  Identities=23%  Similarity=0.302  Sum_probs=79.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCC---C-EEEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGA---D-NIVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      +++.++|.|| +++|.++++.+...|++ |+.+.|..++++.+ .+++.   . ..+++ .+.....+.+..+.+.. +.
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~~-vvl~aRR~drL~~la~~~~~~~~~~~~~DV-tD~~~~~~~i~~~~~~~-g~   81 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGAK-VVLAARREERLEALADEIGAGAALALALDV-TDRAAVEAAIEALPEEF-GR   81 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCCe-EEEEeccHHHHHHHHHhhccCceEEEeecc-CCHHHHHHHHHHHHHhh-Cc
Confidence            4578899997 89999999999999995 99999999998755 66883   1 12233 22334444555554333 47


Q ss_pred             ccEEEEcCCCH-------------------------HHHHHHHHHh--hcCCEEEEeccCCCCCcccchhh
Q 048013          169 IDVSFDCAGFN-------------------------KTMSTALSAT--RAGGKVCLVGMGHREMTVPLTPA  212 (216)
Q Consensus       169 ~d~vi~~~g~~-------------------------~~~~~~~~~l--~~~G~~v~~g~~~~~~~~~~~~~  212 (216)
                      +|++++++|--                         ...+.++..|  +..|.++.+|...+..+.+-..+
T Consensus        82 iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~~y~~~~v  152 (246)
T COG4221          82 IDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRYPYPGGAV  152 (246)
T ss_pred             ccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccccCCCCcc
Confidence            99999999951                         1235555555  34689999998776655555444

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.41  E-value=3.5e-06  Score=70.29  Aligned_cols=99  Identities=19%  Similarity=0.298  Sum_probs=69.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-HcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      ++.+++|+|+|.+|+.+++.++.+|++ |++++++.++.+.+. .++......+ .   +. +.+.+..    ..+|++|
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~-V~v~d~~~~~~~~l~~~~g~~v~~~~-~---~~-~~l~~~l----~~aDvVI  235 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGAT-VTILDINIDRLRQLDAEFGGRIHTRY-S---NA-YEIEDAV----KRADLLI  235 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHhcCceeEecc-C---CH-HHHHHHH----ccCCEEE
Confidence            345699999999999999999999995 999999988877664 4554322111 1   11 1222221    3689999


Q ss_pred             EcCC---C--HH-HHHHHHHHhhcCCEEEEeccCCC
Q 048013          174 DCAG---F--NK-TMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       174 ~~~g---~--~~-~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      ++++   .  +. ..+..++.+++++.++.++...+
T Consensus       236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~G  271 (370)
T TIGR00518       236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQG  271 (370)
T ss_pred             EccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCCC
Confidence            9983   2  11 24778888999999999986544

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.39  E-value=3.9e-06  Score=66.63  Aligned_cols=116  Identities=18%  Similarity=0.303  Sum_probs=80.5

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCC-EEEeCCCCcccHHHHHHHHH
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGAD-NIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~  162 (216)
                      +++.++++|+++|-+|+|- |.+++.+|+..|++ |+.++-+++..+.+++    .|.. .+...-.   ++    +.+ 
T Consensus        65 ~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v~-V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~---d~----rd~-  134 (283)
T COG2230          65 LEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGVT-VVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQ---DY----RDF-  134 (283)
T ss_pred             HHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCCE-EEEeeCCHHHHHHHHHHHHHcCCCcccEEEec---cc----ccc-
Confidence            4788999999999999976 77888899999994 9999999988766644    5555 2211111   11    111 


Q ss_pred             HHcCCCccEEEE-----cCCC---HHHHHHHHHHhhcCCEEEEeccCCCCCcc-cchhhhhcC
Q 048013          163 KAMGTGIDVSFD-----CAGF---NKTMSTALSATRAGGKVCLVGMGHREMTV-PLTPAAASF  216 (216)
Q Consensus       163 ~~~~~~~d~vi~-----~~g~---~~~~~~~~~~l~~~G~~v~~g~~~~~~~~-~~~~~~~~~  216 (216)
                         ...||-|+.     .+|.   ++.+..+.+.|+|+|++.+..+.....+. ...+++.+|
T Consensus       135 ---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~y  194 (283)
T COG2230         135 ---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKY  194 (283)
T ss_pred             ---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHh
Confidence               123776653     4444   46778899999999999988876655444 666666653

>PRK08324 short chain dehydrogenase; Validated

Probab=98.39  E-value=6.1e-06  Score=74.29  Aligned_cols=142  Identities=22%  Similarity=0.274  Sum_probs=86.1

Q ss_pred             CccceeEEecCCceEECCCCCCchhhhcchhhHHHHHHHHHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 048013           50 GCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV  128 (216)
Q Consensus        50 g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~  128 (216)
                      .++.+|..+++..++.+ +..+.+++.+..        .-.....+++++||+|+ |++|..+++.+...|++ |+++++
T Consensus       385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~l~~--------~~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~-Vvl~~r  454 (681)
T PRK08324        385 EAVGRYEPLSEQEAFDI-EYWSLEQAKLQR--------MPKPKPLAGKVALVTGAAGGIGKATAKRLAAEGAC-VVLADL  454 (681)
T ss_pred             hhcCCccCCChhhhcce-eeehhhhhhhhc--------CCCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCE-EEEEeC
Confidence            34566777776666655 444444443110        00112346789999995 99999999999999994 999999


Q ss_pred             ChHHHHHH-HHcCC--C-EEEeCC-CCcccHHHHHHHHHHHcCCCccEEEEcCCC-------------------------
Q 048013          129 DDYRLSVA-KKLGA--D-NIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGF-------------------------  178 (216)
Q Consensus       129 ~~~~~~~~-~~~g~--~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~-------------------------  178 (216)
                      +.++.+.+ ++++.  . ..+..+ .+.+...+.+.++.+. .+++|++|+++|.                         
T Consensus       455 ~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~-~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~  533 (681)
T PRK08324        455 DEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALA-FGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGH  533 (681)
T ss_pred             CHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHH-cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHH
Confidence            98776654 33443  1 112212 1222333334443322 3479999999982                         


Q ss_pred             HHHHHHHHHHhhc---CCEEEEeccCC
Q 048013          179 NKTMSTALSATRA---GGKVCLVGMGH  202 (216)
Q Consensus       179 ~~~~~~~~~~l~~---~G~~v~~g~~~  202 (216)
                      ...++.+++.++.   +|+++.++...
T Consensus       534 ~~l~~~~~~~l~~~~~~g~iV~vsS~~  560 (681)
T PRK08324        534 FLVAREAVRIMKAQGLGGSIVFIASKN  560 (681)
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEECCcc
Confidence            1224555666665   58999988644

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=7.2e-06  Score=65.67  Aligned_cols=141  Identities=19%  Similarity=0.300  Sum_probs=86.6

Q ss_pred             ccceeEEecCCceEECCCCCCchhhhcchhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           51 CLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        51 ~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      .|.+|..-.....+++++.+.+-++.. ++......+++.. +++++++|-.|+|+ |.++|..++ +|+..++++|.++
T Consensus       120 sw~~~~~~~~~~~i~lDPGlAFGTG~H-pTT~lcL~~Le~~-~~~g~~vlDvGcGS-GILaIAa~k-LGA~~v~g~DiDp  195 (300)
T COG2264         120 SWREYPEPSDELNIELDPGLAFGTGTH-PTTSLCLEALEKL-LKKGKTVLDVGCGS-GILAIAAAK-LGAKKVVGVDIDP  195 (300)
T ss_pred             CCccCCCCCCceEEEEccccccCCCCC-hhHHHHHHHHHHh-hcCCCEEEEecCCh-hHHHHHHHH-cCCceEEEecCCH
Confidence            355443222355678888776654431 1222233444333 56999999999875 777776666 8888899999998


Q ss_pred             HHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCH---HHHHHHHHHhhcCCEEEEeccCCC
Q 048013          131 YRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFN---KTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       131 ~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~---~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      ...+.+++    .+......    ...+.  ....  ..++.+|+|+-++=..   ...+...+.++|+|++++.|+...
T Consensus       196 ~AV~aa~eNa~~N~v~~~~~----~~~~~--~~~~--~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl~~  267 (300)
T COG2264         196 QAVEAARENARLNGVELLVQ----AKGFL--LLEV--PENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILED  267 (300)
T ss_pred             HHHHHHHHHHHHcCCchhhh----ccccc--chhh--cccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeehHh
Confidence            77766644    33332000    00000  0011  1346899999877542   344677888999999999996443

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.33  E-value=7.6e-06  Score=66.02  Aligned_cols=129  Identities=19%  Similarity=0.263  Sum_probs=77.3

Q ss_pred             CceEECCCCCCchhhhcchhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc-
Q 048013           61 DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL-  139 (216)
Q Consensus        61 ~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~-  139 (216)
                      ...+.+++.+.+..+.. +........++.. .+++++||.+|+|. |.+++.+++ .|..+|+++|.++...+.+++. 
T Consensus       127 ~~~i~ldpg~aFgtG~h-~tt~l~l~~l~~~-~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~  202 (288)
T TIGR00406       127 ALIIMLDPGLAFGTGTH-PTTSLCLEWLEDL-DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNA  202 (288)
T ss_pred             cEEEEECCCCcccCCCC-HHHHHHHHHHHhh-cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHH
Confidence            34455555554444321 1111222333332 45789999999987 877776665 5766799999999877766542 


Q ss_pred             ---CCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCH---HHHHHHHHHhhcCCEEEEeccCC
Q 048013          140 ---GADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFN---KTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       140 ---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~---~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                         +....+....  .+    ...   ....+||+|+.+....   ..+..+.+.|+|+|.+++.|...
T Consensus       203 ~~n~~~~~~~~~~--~~----~~~---~~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~~  262 (288)
T TIGR00406       203 ELNQVSDRLQVKL--IY----LEQ---PIEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGILE  262 (288)
T ss_pred             HHcCCCcceEEEe--cc----ccc---ccCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence               2221111000  01    111   1245799999876653   34567788999999999988643

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.32  E-value=2.5e-06  Score=72.52  Aligned_cols=101  Identities=19%  Similarity=0.282  Sum_probs=69.1

Q ss_pred             CCCCCchhhhcchhhHHHHHHHHHcC----CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHH-HHHHcCC
Q 048013           67 PDNVSLEEGAMCEPLSVGVHACRRAN----IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLS-VAKKLGA  141 (216)
Q Consensus        67 p~~~~~~~aa~~~~~~~a~~~l~~~~----~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~-~~~~~g~  141 (216)
                      |+.+..+.+....+.++++++++...    ..++++|+|+|+|.+|.++++.++..|+..+++++++.++.+ +++++|.
T Consensus       149 ~k~v~~~t~i~~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~  228 (423)
T PRK00045        149 AKRVRTETGIGAGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG  228 (423)
T ss_pred             HhhHhhhcCCCCCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC
Confidence            33333333333346777777775432    367899999999999999999999999877899999988755 6677775


Q ss_pred             CEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHH
Q 048013          142 DNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK  180 (216)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~  180 (216)
                      . +..+    .+    +.+.    -.++|+||++++.+.
T Consensus       229 ~-~~~~----~~----~~~~----l~~aDvVI~aT~s~~  254 (423)
T PRK00045        229 E-AIPL----DE----LPEA----LAEADIVISSTGAPH  254 (423)
T ss_pred             c-EeeH----HH----HHHH----hccCCEEEECCCCCC
Confidence            3 2221    11    1221    136899999999744

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=98.31  E-value=3e-05  Score=61.30  Aligned_cols=118  Identities=20%  Similarity=0.291  Sum_probs=77.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcC----CC-EEEeCCCCcccHHHHHHHHHHHcC
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLG----AD-NIVKVSTNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g----~~-~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      ..+++++|+|| +++|...++.+...|++ ++.+.|++++++.+ +++.    .. .++..|-.+.+-.+.+.+.....+
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~-liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~   82 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYN-LILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG   82 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence            46789999997 89999999999999995 99999999998765 3333    22 244443333333333333222344


Q ss_pred             CCccEEEEcCCCH-------------------------HHHHHHHHHhhc--CCEEEEeccCCCCCcccchhh
Q 048013          167 TGIDVSFDCAGFN-------------------------KTMSTALSATRA--GGKVCLVGMGHREMTVPLTPA  212 (216)
Q Consensus       167 ~~~d~vi~~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~~~~~~~~~~~~~  212 (216)
                      ..+|+.++++|--                         ......++-|..  .|.++.+|...+..+.|....
T Consensus        83 ~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~p~~av  155 (265)
T COG0300          83 GPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPTPYMAV  155 (265)
T ss_pred             CcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCCCcchHH
Confidence            5899999999941                         123444444433  589999987666665555443

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.30  E-value=1.9e-05  Score=59.83  Aligned_cols=117  Identities=15%  Similarity=0.198  Sum_probs=82.7

Q ss_pred             CCCEEEEEcC--CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-HcCCCEE-EeCCCCcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS--GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KLGADNI-VKVSTNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga--g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      ..+.|||.|+  |++|.+.+.-....|+ .|+++.|..+....+. .+|.... +++ +.+++..+...++.+-..++.|
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl~~~kLDV-~~~~~V~~v~~evr~~~~Gkld   83 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGLKPYKLDV-SKPEEVVTVSGEVRANPDGKLD   83 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCCeeEEecc-CChHHHHHHHHHHhhCCCCceE
Confidence            4578899984  8999999988888999 4999999988877665 6776543 233 3444555555555543466899


Q ss_pred             EEEEcCCCH-------------------------HHHHHHHHH-hhcCCEEEEeccCCCCCcccchhhh
Q 048013          171 VSFDCAGFN-------------------------KTMSTALSA-TRAGGKVCLVGMGHREMTVPLTPAA  213 (216)
Q Consensus       171 ~vi~~~g~~-------------------------~~~~~~~~~-l~~~G~~v~~g~~~~~~~~~~~~~~  213 (216)
                      +.++++|.+                         .+.++.... .+..|+++.+|....-+++++..++
T Consensus        84 ~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vpfpf~~iY  152 (289)
T KOG1209|consen   84 LLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVPFPFGSIY  152 (289)
T ss_pred             EEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEeccchhhhh
Confidence            999998863                         122333333 4778999999977776777776654

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.28  E-value=5.1e-06  Score=66.87  Aligned_cols=138  Identities=19%  Similarity=0.335  Sum_probs=82.0

Q ss_pred             ccceeEEecCCceEECCCCCCchhhhcchhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           51 CLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        51 ~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      .|.+|-.-+...++.|++.+.|-.+..- +......+++.. .+++++||-+|+|. |.+++..++ +|++.|+++|.++
T Consensus       119 ~w~~~~~~~~~~~I~idPg~AFGTG~H~-TT~lcl~~l~~~-~~~g~~vLDvG~GS-GILaiaA~k-lGA~~v~a~DiDp  194 (295)
T PF06325_consen  119 SWEEYPEPPDEIVIEIDPGMAFGTGHHP-TTRLCLELLEKY-VKPGKRVLDVGCGS-GILAIAAAK-LGAKKVVAIDIDP  194 (295)
T ss_dssp             TT----SSTTSEEEEESTTSSS-SSHCH-HHHHHHHHHHHH-SSTTSEEEEES-TT-SHHHHHHHH-TTBSEEEEEESSC
T ss_pred             CCcccCCCCCcEEEEECCCCcccCCCCH-HHHHHHHHHHHh-ccCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEecCCH
Confidence            3555522345667888888877665521 222234445444 67889999999864 666666666 7998899999999


Q ss_pred             HHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHH---HHHHHHHHhhcCCEEEEeccCCC
Q 048013          131 YRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK---TMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       131 ~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~---~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      ...+.+++    .+....+.... ..+          ....+||+|+-++-...   ......+.|+|+|.+++.|+...
T Consensus       195 ~Av~~a~~N~~~N~~~~~~~v~~-~~~----------~~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~  263 (295)
T PF06325_consen  195 LAVEAARENAELNGVEDRIEVSL-SED----------LVEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEE  263 (295)
T ss_dssp             HHHHHHHHHHHHTT-TTCEEESC-TSC----------TCCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGG
T ss_pred             HHHHHHHHHHHHcCCCeeEEEEE-ecc----------cccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHH
Confidence            87766544    34433221111 111          01357999999888732   23445667899999999997544

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK05993 short chain dehydrogenase; Provisional

Probab=98.28  E-value=2.5e-05  Score=62.47  Aligned_cols=107  Identities=15%  Similarity=0.211  Sum_probs=70.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEE-eCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIV-KVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .+++++|+|+ |++|..+++.+...|++ |++++++.++.+.+.+.+...+. ++ .+.++..+.+.++.+..+..+|++
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~-Vi~~~r~~~~~~~l~~~~~~~~~~Dl-~d~~~~~~~~~~~~~~~~g~id~l   80 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWR-VFATCRKEEDVAALEAEGLEAFQLDY-AEPESIAALVAQVLELSGGRLDAL   80 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHCCceEEEccC-CCHHHHHHHHHHHHHHcCCCccEE
Confidence            4578999996 99999999999889995 89999998887777665544332 22 222333344444433334579999


Q ss_pred             EEcCCCH----------H---------------HHHHHHHHhhc--CCEEEEeccCCC
Q 048013          173 FDCAGFN----------K---------------TMSTALSATRA--GGKVCLVGMGHR  203 (216)
Q Consensus       173 i~~~g~~----------~---------------~~~~~~~~l~~--~G~~v~~g~~~~  203 (216)
                      |++.|..          +               ..+.+++.+..  .|+++.++...+
T Consensus        81 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~  138 (277)
T PRK05993         81 FNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILG  138 (277)
T ss_pred             EECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhh
Confidence            9998631          0               13456666644  478998875433

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.24  E-value=1.3e-05  Score=64.01  Aligned_cols=103  Identities=25%  Similarity=0.410  Sum_probs=72.1

Q ss_pred             HcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHH
Q 048013           90 RANIGPETNVLIMGSGPIGLVTMLAARAFGAP-RIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        90 ~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~-~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      ...++++++||.+|+|+ |..++.+++..|.. +|+++|.+++.++.+++    ++...+...   ..+    +.++. .
T Consensus        72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~---~~d----~~~l~-~  142 (272)
T PRK11873         72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFR---LGE----IEALP-V  142 (272)
T ss_pred             hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEE---Ecc----hhhCC-C
Confidence            45678999999999887 88888888877753 69999999998888765    343322111   112    12221 1


Q ss_pred             cCCCccEEEEcC------CCHHHHHHHHHHhhcCCEEEEeccC
Q 048013          165 MGTGIDVSFDCA------GFNKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       165 ~~~~~d~vi~~~------g~~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      ....||+|+...      .....++.+.+.|+|+|++++.++.
T Consensus       143 ~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~  185 (272)
T PRK11873        143 ADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVV  185 (272)
T ss_pred             CCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence            235799998654      2246789999999999999988754

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.24  E-value=7.3e-06  Score=58.57  Aligned_cols=98  Identities=19%  Similarity=0.207  Sum_probs=63.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCE--EEeCCCCcccHHHHHHHHHHHcCCCc
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADN--IVKVSTNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      --++++++|+|+|++|.+++..+...|++.+.++.|+.++.+.+ ++++...  ...++    +.    .+.    -..+
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~----~~----~~~----~~~~   76 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLE----DL----EEA----LQEA   76 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGG----GH----CHH----HHTE
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHH----HH----HHH----HhhC
Confidence            34689999999999999999999999998899999999886654 5664432  22321    11    111    1259


Q ss_pred             cEEEEcCCCHHH--HHHHHHHhhc-CCEEEEeccCC
Q 048013          170 DVSFDCAGFNKT--MSTALSATRA-GGKVCLVGMGH  202 (216)
Q Consensus       170 d~vi~~~g~~~~--~~~~~~~l~~-~G~~v~~g~~~  202 (216)
                      |++|++++....  .+..+....+ -+.++.++.+.
T Consensus        77 DivI~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr  112 (135)
T PF01488_consen   77 DIVINATPSGMPIITEEMLKKASKKLRLVIDLAVPR  112 (135)
T ss_dssp             SEEEE-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-
T ss_pred             CeEEEecCCCCcccCHHHHHHHHhhhhceeccccCC
Confidence            999999997322  1222222222 25888888643

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.20  E-value=2.2e-05  Score=58.38  Aligned_cols=103  Identities=21%  Similarity=0.348  Sum_probs=73.0

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEEEeCCCCcccHHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      -...+++++.++-+|+|. |..++++++..-..+|++++++++..+..    ++||.+++..+..   +..+.+.++   
T Consensus        28 s~L~~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g---~Ap~~L~~~---  100 (187)
T COG2242          28 SKLRPRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEG---DAPEALPDL---  100 (187)
T ss_pred             HhhCCCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEec---cchHhhcCC---
Confidence            446789999999899875 77888888554444799999999987765    4589887655432   222233221   


Q ss_pred             cCCCccEEEEcCCC--HHHHHHHHHHhhcCCEEEEecc
Q 048013          165 MGTGIDVSFDCAGF--NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       165 ~~~~~d~vi~~~g~--~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                        ..+|.+|-.=|.  +..++.++..|+++|++|.--.
T Consensus       101 --~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~nai  136 (187)
T COG2242         101 --PSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAI  136 (187)
T ss_pred             --CCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEee
Confidence              258998843332  4678999999999999997654

>PRK06182 short chain dehydrogenase; Validated

Probab=98.19  E-value=7.6e-05  Score=59.51  Aligned_cols=81  Identities=23%  Similarity=0.257  Sum_probs=56.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEE-eCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIV-KVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      ++++++|+|+ |++|..+++.+...|++ |++++++.++++.+...+...+. ++ .+.+++.+.+.++.+ ...++|++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~-V~~~~r~~~~l~~~~~~~~~~~~~Dv-~~~~~~~~~~~~~~~-~~~~id~l   78 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYT-VYGAARRVDKMEDLASLGVHPLSLDV-TDEASIKAAVDTIIA-EEGRIDVL   78 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHhCCCeEEEeeC-CCHHHHHHHHHHHHH-hcCCCCEE
Confidence            3578999996 89999999999889995 88899998877666554544322 22 223334444444433 23479999


Q ss_pred             EEcCCC
Q 048013          173 FDCAGF  178 (216)
Q Consensus       173 i~~~g~  178 (216)
                      |+++|.
T Consensus        79 i~~ag~   84 (273)
T PRK06182         79 VNNAGY   84 (273)
T ss_pred             EECCCc
Confidence            999984

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.11  E-value=3.4e-05  Score=59.54  Aligned_cols=98  Identities=23%  Similarity=0.292  Sum_probs=66.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      -++.+||-+|+|+ |+++.-+|+ +|+ .|+++|.+++..+.++.-.....+.++-.. .   .++++.. .++.||+|+
T Consensus        58 l~g~~vLDvGCGg-G~Lse~mAr-~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~-~---~~edl~~-~~~~FDvV~  129 (243)
T COG2227          58 LPGLRVLDVGCGG-GILSEPLAR-LGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQ-A---TVEDLAS-AGGQFDVVT  129 (243)
T ss_pred             CCCCeEEEecCCc-cHhhHHHHH-CCC-eeEEecCChHHHHHHHHhhhhccccccchh-h---hHHHHHh-cCCCccEEE
Confidence            4789999999875 667666666 788 499999999999888754333322211111 1   2333321 347899998


Q ss_pred             E-----cCCCH-HHHHHHHHHhhcCCEEEEec
Q 048013          174 D-----CAGFN-KTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       174 ~-----~~g~~-~~~~~~~~~l~~~G~~v~~g  199 (216)
                      .     .+.++ ..+..+.++++|+|.+++.=
T Consensus       130 cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~ST  161 (243)
T COG2227         130 CMEVLEHVPDPESFLRACAKLVKPGGILFLST  161 (243)
T ss_pred             EhhHHHccCCHHHHHHHHHHHcCCCcEEEEec
Confidence            6     34443 35678999999999988654

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.10  E-value=3.5e-06  Score=74.23  Aligned_cols=80  Identities=24%  Similarity=0.421  Sum_probs=56.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC---------------------hHHHHHHHHcCCCEEEeCCCC
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD---------------------DYRLSVAKKLGADNIVKVSTN  150 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~---------------------~~~~~~~~~~g~~~~~~~~~~  150 (216)
                      ..+.+++|+|+|+|+.|+++++.++..|++ |++++..                     +.+++.++++|++..++....
T Consensus       133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~-V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~  211 (564)
T PRK12771        133 APDTGKRVAVIGGGPAGLSAAYHLRRMGHA-VTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG  211 (564)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence            357889999999999999999999999996 8888742                     345667788898765542110


Q ss_pred             cccHHHHHHHHHHHcCCCccEEEEcCCCH
Q 048013          151 LQDIAEEVEKIQKAMGTGIDVSFDCAGFN  179 (216)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~d~vi~~~g~~  179 (216)
                       .+..  ..++    ..++|++|+++|..
T Consensus       212 -~~~~--~~~~----~~~~D~Vi~AtG~~  233 (564)
T PRK12771        212 -EDIT--LEQL----EGEFDAVFVAIGAQ  233 (564)
T ss_pred             -CcCC--HHHH----HhhCCEEEEeeCCC
Confidence             1210  1111    12599999999974

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=98.09  E-value=2.3e-05  Score=66.64  Aligned_cols=93  Identities=19%  Similarity=0.270  Sum_probs=71.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .-.|++++|+|.|.+|..+++.++.+|++ |++++++..+...+...|....        +    +.++.    ...|++
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~-ViV~e~dp~~a~~A~~~G~~~~--------~----leell----~~ADIV  313 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGAR-VVVTEIDPICALQAAMEGYQVV--------T----LEDVV----ETADIF  313 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCchhHHHHHhcCceec--------c----HHHHH----hcCCEE
Confidence            45799999999999999999999999994 8889888766545544554321        1    12221    258999


Q ss_pred             EEcCCCHHHH-HHHHHHhhcCCEEEEeccCC
Q 048013          173 FDCAGFNKTM-STALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       173 i~~~g~~~~~-~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +.++|....+ ...+..|++++.++.+|...
T Consensus       314 I~atGt~~iI~~e~~~~MKpGAiLINvGr~d  344 (476)
T PTZ00075        314 VTATGNKDIITLEHMRRMKNNAIVGNIGHFD  344 (476)
T ss_pred             EECCCcccccCHHHHhccCCCcEEEEcCCCc
Confidence            9999986666 58999999999999999653

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.08  E-value=0.00019  Score=57.32  Aligned_cols=116  Identities=22%  Similarity=0.308  Sum_probs=77.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCC---CCcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVS---TNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~---~~~~~~~~~~~~~~~~~  165 (216)
                      .++.|+|.|| +++|.+.+.-....|++ ++.+.+..++++..    ++.+..+ ++.+.   .+.++..+.+.++..+ 
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~~-l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~-   88 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGAK-LVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH-   88 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCc-eEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh-
Confidence            5789999997 79999888877788996 55555666555444    4444443 33221   2223344444443323 


Q ss_pred             CCCccEEEEcCCCH-------------------------HHHHHHHHHhhcC--CEEEEeccCCCCCcccchhh
Q 048013          166 GTGIDVSFDCAGFN-------------------------KTMSTALSATRAG--GKVCLVGMGHREMTVPLTPA  212 (216)
Q Consensus       166 ~~~~d~vi~~~g~~-------------------------~~~~~~~~~l~~~--G~~v~~g~~~~~~~~~~~~~  212 (216)
                      -+++|+.++++|-.                         ...+.+++.|+..  |+++.++...+..++|..++
T Consensus        89 fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P~~~~  162 (282)
T KOG1205|consen   89 FGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLPFRSI  162 (282)
T ss_pred             cCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCCcccc
Confidence            35899999999852                         1457888888654  99999998888777777653

>PRK05693 short chain dehydrogenase; Provisional

Probab=98.06  E-value=0.00025  Score=56.55  Aligned_cols=79  Identities=23%  Similarity=0.279  Sum_probs=54.5

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEE-EeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNI-VKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      +++||+|+ |++|..+++.+...|++ |++++++.++.+.+...+...+ .++ .+.++..+.+.++.+ ...++|++|+
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~Dl-~~~~~~~~~~~~~~~-~~~~id~vi~   78 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYE-VWATARKAEDVEALAAAGFTAVQLDV-NDGAALARLAEELEA-EHGGLDVLIN   78 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHCCCeEEEeeC-CCHHHHHHHHHHHHH-hcCCCCEEEE
Confidence            47899996 89999999999989995 8889998877776655554332 232 222344444444432 2357999999


Q ss_pred             cCCC
Q 048013          175 CAGF  178 (216)
Q Consensus       175 ~~g~  178 (216)
                      ++|.
T Consensus        79 ~ag~   82 (274)
T PRK05693         79 NAGY   82 (274)
T ss_pred             CCCC
Confidence            9983

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.06  E-value=0.00015  Score=55.16  Aligned_cols=103  Identities=22%  Similarity=0.380  Sum_probs=70.8

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHHH----HcC-CCEEEeCCCCcccHHHHHHHH
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVAK----KLG-ADNIVKVSTNLQDIAEEVEKI  161 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~~----~~g-~~~~~~~~~~~~~~~~~~~~~  161 (216)
                      +....+.++++++.+|+|. |..++.+++..+. .+|+++|.+++..+.++    .++ .+.+..+.   .+..+.+.. 
T Consensus        33 l~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~---~d~~~~l~~-  107 (198)
T PRK00377         33 LSKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIK---GEAPEILFT-  107 (198)
T ss_pred             HHHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEE---echhhhHhh-
Confidence            3456788999999999987 8888888887642 36999999988877553    456 33332221   222222222 


Q ss_pred             HHHcCCCccEEEEcCCC---HHHHHHHHHHhhcCCEEEEe
Q 048013          162 QKAMGTGIDVSFDCAGF---NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~  198 (216)
                         ....+|.||...+.   ...++.+.+.|+|+|+++..
T Consensus       108 ---~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~  144 (198)
T PRK00377        108 ---INEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVID  144 (198)
T ss_pred             ---cCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence               23479999986553   35678888999999999853

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.01  E-value=0.00011  Score=61.63  Aligned_cols=104  Identities=21%  Similarity=0.280  Sum_probs=70.7

Q ss_pred             HHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           85 VHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        85 ~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      +..+ +...++++++||.+|+|. |..++.+++..|+ +|+++|.+++..+.+++......+.+  ...++    .++  
T Consensus       156 ~~~l~~~l~l~~g~rVLDIGcG~-G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~~l~v~~--~~~D~----~~l--  225 (383)
T PRK11705        156 LDLICRKLQLKPGMRVLDIGCGW-GGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLPVEI--RLQDY----RDL--  225 (383)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCc-cHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhccCeEEE--EECch----hhc--
Confidence            3444 667789999999999864 7777888888888 49999999999888866432111111  11122    111  


Q ss_pred             HcCCCccEEEEc-----CCC---HHHHHHHHHHhhcCCEEEEecc
Q 048013          164 AMGTGIDVSFDC-----AGF---NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       164 ~~~~~~d~vi~~-----~g~---~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                        ...||.|+..     ++.   ...++.+.+.|+|+|++++..+
T Consensus       226 --~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i  268 (383)
T PRK11705        226 --NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI  268 (383)
T ss_pred             --CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence              3469998753     333   3567888899999999987644

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.01  E-value=0.00034  Score=54.40  Aligned_cols=106  Identities=21%  Similarity=0.201  Sum_probs=67.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcC---CCEEEeCCCC-cccHHHHHHHHHHHcCCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLG---ADNIVKVSTN-LQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  168 (216)
                      .+++++|+|+ |++|..+++.+...|++ |+.+++++++.+.+ +++.   ....+..+-. .+...+.+++.... -.+
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~~   81 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGAQ-VCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKV-LNA   81 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHH-hCC
Confidence            4679999996 89999999999999995 88999988876655 3322   1122222211 22233333333221 246


Q ss_pred             ccEEEEcCCCH-----------------------HHHHHHHHHhhcCCEEEEeccCC
Q 048013          169 IDVSFDCAGFN-----------------------KTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       169 ~d~vi~~~g~~-----------------------~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +|.++.+.+..                       ...+..++.++.+|+++.++...
T Consensus        82 id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~  138 (238)
T PRK05786         82 IDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMS  138 (238)
T ss_pred             CCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecch
Confidence            89999988741                       12455666677789999888543

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=97.92  E-value=0.00053  Score=51.82  Aligned_cols=106  Identities=21%  Similarity=0.282  Sum_probs=71.9

Q ss_pred             CCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCC---EEEeCCCCcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMG-SGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGAD---NIVKVSTNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~G-ag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      -|.+|||.| ++++|+..++-...+|=+ ||+..|++++++.++..-..   .+.++  .+.+..+.+-++........+
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN~-VIi~gR~e~~L~e~~~~~p~~~t~v~Dv--~d~~~~~~lvewLkk~~P~lN   80 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGNT-VIICGRNEERLAEAKAENPEIHTEVCDV--ADRDSRRELVEWLKKEYPNLN   80 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCCE-EEEecCcHHHHHHHHhcCcchheeeecc--cchhhHHHHHHHHHhhCCchh
Confidence            478999997 589999999999999874 99999999999988764432   23333  223333344444444455689


Q ss_pred             EEEEcCCCH---------------------------HHHHHHHHHh--hcCCEEEEeccCCC
Q 048013          171 VSFDCAGFN---------------------------KTMSTALSAT--RAGGKVCLVGMGHR  203 (216)
Q Consensus       171 ~vi~~~g~~---------------------------~~~~~~~~~l--~~~G~~v~~g~~~~  203 (216)
                      ++++++|-.                           ......++.|  +|.+.++.++..-.
T Consensus        81 vliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLa  142 (245)
T COG3967          81 VLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLA  142 (245)
T ss_pred             eeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccc
Confidence            999999852                           1234555555  34688888875433

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.89  E-value=0.00025  Score=59.49  Aligned_cols=96  Identities=19%  Similarity=0.262  Sum_probs=68.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHH-HHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLS-VAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      -.++++||+|+|-||.++++.+...|.+.++++.|+.++-+ ++++++...+ .++    +    +...    -..+|+|
T Consensus       176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~-~l~----e----l~~~----l~~~DvV  242 (414)
T COG0373         176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAV-ALE----E----LLEA----LAEADVV  242 (414)
T ss_pred             cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeee-cHH----H----HHHh----hhhCCEE
Confidence            46789999999999999999999999888999999988854 6788995432 211    1    2211    1359999


Q ss_pred             EEcCCCHHHH---HHHHHHhhcC-C-EEEEeccCC
Q 048013          173 FDCAGFNKTM---STALSATRAG-G-KVCLVGMGH  202 (216)
Q Consensus       173 i~~~g~~~~~---~~~~~~l~~~-G-~~v~~g~~~  202 (216)
                      |.+++.+...   ....+.+++. . .++.+++|.
T Consensus       243 issTsa~~~ii~~~~ve~a~~~r~~~livDiavPR  277 (414)
T COG0373         243 ISSTSAPHPIITREMVERALKIRKRLLIVDIAVPR  277 (414)
T ss_pred             EEecCCCccccCHHHHHHHHhcccCeEEEEecCCC
Confidence            9999985432   3444455543 3 456777655

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.89  E-value=0.00027  Score=57.80  Aligned_cols=103  Identities=24%  Similarity=0.318  Sum_probs=72.5

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHHH----HcCCCEEEeCCCCcccHHHHHHHH
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVAK----KLGADNIVKVSTNLQDIAEEVEKI  161 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~  161 (216)
                      .++...++++++||.+|+|. |..++.+++..+. ..|++++.+++..+.++    +.+.+.+....   .+..+...  
T Consensus        72 ll~~L~i~~g~~VLDIG~Gt-G~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~---gD~~~~~~--  145 (322)
T PRK13943         72 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVC---GDGYYGVP--  145 (322)
T ss_pred             HHHhcCCCCCCEEEEEeCCc-cHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe---CChhhccc--
Confidence            34556788999999999974 8888899987763 25899999988665543    46665544321   22222111  


Q ss_pred             HHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEe
Q 048013          162 QKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~  198 (216)
                         ....+|+|+.+.+........++.|+++|+++..
T Consensus       146 ---~~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        146 ---EFAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             ---ccCCccEEEECCchHHhHHHHHHhcCCCCEEEEE
Confidence               1246999999988766667888999999998763

>PRK06139 short chain dehydrogenase; Provisional

Probab=97.88  E-value=0.00063  Score=56.01  Aligned_cols=82  Identities=27%  Similarity=0.362  Sum_probs=54.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEE-EeCC-CCcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNI-VKVS-TNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~-~~~~-~~~~~~~~~~~~~~~~~~~  167 (216)
                      +++++||+|+ |++|..+++.+...|++ |+.+++++++++.+    ++.+.... +..| .+.++..+.+.++.+ ..+
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~-Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~-~~g   83 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGAR-LVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAAS-FGG   83 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH-hcC
Confidence            5689999996 89999999999999995 88899998876543    33454432 2211 122333333444332 235


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|+++|.
T Consensus        84 ~iD~lVnnAG~   94 (330)
T PRK06139         84 RIDVWVNNVGV   94 (330)
T ss_pred             CCCEEEECCCc
Confidence            79999999983

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.87  E-value=0.00046  Score=53.17  Aligned_cols=103  Identities=20%  Similarity=0.258  Sum_probs=69.4

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHH
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKI  161 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~  161 (216)
                      .++...++++++||-+|+|. |..++.+++..+. ..|+.++.+++-.+.+++    .+...+.....   +..+.   +
T Consensus        68 ~~~~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~g---d~~~~---~  140 (212)
T PRK13942         68 MCELLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVG---DGTLG---Y  140 (212)
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC---CcccC---C
Confidence            34566788999999999875 7777778877653 269999999887765543    45443322111   11100   1


Q ss_pred             HHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEe
Q 048013          162 QKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~  198 (216)
                        ....+||.|+-........+..++.|+++|+++..
T Consensus       141 --~~~~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        141 --EENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             --CcCCCcCEEEECCCcccchHHHHHhhCCCcEEEEE
Confidence              12357999987666556678889999999998764

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.86  E-value=0.00049  Score=47.78  Aligned_cols=103  Identities=23%  Similarity=0.343  Sum_probs=68.2

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----HcCCCEEEeCCCCcccHHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KLGADNIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      +...+.++++++.+|+|. |..+..+++..+..+++++|.++...+.++    .++...+.....   +.......    
T Consensus        13 ~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~----   84 (124)
T TIGR02469        13 SKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEG---DAPEALED----   84 (124)
T ss_pred             HHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEec---cccccChh----
Confidence            445667788999999876 888888888765446999999988776653    344433222111   11111111    


Q ss_pred             cCCCccEEEEcCCC---HHHHHHHHHHhhcCCEEEEec
Q 048013          165 MGTGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       165 ~~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ....+|.|+.....   ...++.+.+.|+|+|++++..
T Consensus        85 ~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        85 SLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             hcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence            13479999976543   346788999999999998754

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.84  E-value=7.9e-05  Score=57.19  Aligned_cols=105  Identities=26%  Similarity=0.346  Sum_probs=69.6

Q ss_pred             HHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChHHHHHH----HHcCCCEEEeCCCCcccHHHHHHH
Q 048013           86 HACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAP-RIVIVDVDDYRLSVA----KKLGADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        86 ~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~-~vv~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~  160 (216)
                      .+++...++++++||-+|+|. |..++-+++..|.. .|+.++++++-.+.+    ++++..++.....   |....   
T Consensus        63 ~~l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~g---dg~~g---  135 (209)
T PF01135_consen   63 RMLEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVG---DGSEG---  135 (209)
T ss_dssp             HHHHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES----GGGT---
T ss_pred             HHHHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEc---chhhc---
Confidence            455777899999999999875 78888888877753 588999988655444    4456654433211   11111   


Q ss_pred             HHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEE-ec
Q 048013          161 IQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCL-VG  199 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~-~g  199 (216)
                      +  ....+||.|+-+.+.+......++.|+++|+++. ++
T Consensus       136 ~--~~~apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  136 W--PEEAPFDRIIVTAAVPEIPEALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             T--GGG-SEEEEEESSBBSS--HHHHHTEEEEEEEEEEES
T ss_pred             c--ccCCCcCEEEEeeccchHHHHHHHhcCCCcEEEEEEc
Confidence            1  1235799999998887777889999999999986 44

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.83  E-value=0.00097  Score=53.26  Aligned_cols=107  Identities=19%  Similarity=0.247  Sum_probs=66.1

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCChHHHH---HH-HHcCCCEEEeCC-CCcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-G--PIGLVTMLAARAFGAPRIVIVDVDDYRLS---VA-KKLGADNIVKVS-TNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g--~~G~~~i~~a~~~g~~~vv~~~~~~~~~~---~~-~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~  166 (216)
                      +++++||+|+ +  ++|.++++.+...|++ |+.++++++..+   .+ ++++....+..| .+.++..+.+.++.+.. 
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~-V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~-   83 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAE-LAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKW-   83 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCCE-EEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHh-
Confidence            5688999997 4  8999999999999995 777777653322   22 334533222222 12233444445544333 


Q ss_pred             CCccEEEEcCCCH--------------H---------------HHHHHHHHhhcCCEEEEeccCCC
Q 048013          167 TGIDVSFDCAGFN--------------K---------------TMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       167 ~~~d~vi~~~g~~--------------~---------------~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      +.+|++++++|..              +               ..+.+++.|..+|+++.++....
T Consensus        84 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~  149 (271)
T PRK06505         84 GKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGS  149 (271)
T ss_pred             CCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCc
Confidence            4799999998831              0               12445566666789988875443

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.80  E-value=0.00018  Score=53.86  Aligned_cols=89  Identities=20%  Similarity=0.213  Sum_probs=60.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      -.+++|.|+|.|.+|..+++.++.+|+ +|++.+++..........+...        .++.+.+.        ..|+|+
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~~~~--------~~l~ell~--------~aDiv~   96 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFGVEY--------VSLDELLA--------QADIVS   96 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTTEEE--------SSHHHHHH--------H-SEEE
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhccccccee--------eehhhhcc--------hhhhhh
Confidence            468999999999999999999999999 4999999887665444444421        12222221        378888


Q ss_pred             EcCCCHH-----HHHHHHHHhhcCCEEEEec
Q 048013          174 DCAGFNK-----TMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       174 ~~~g~~~-----~~~~~~~~l~~~G~~v~~g  199 (216)
                      .+....+     .-...+..|+++..+|.++
T Consensus        97 ~~~plt~~T~~li~~~~l~~mk~ga~lvN~a  127 (178)
T PF02826_consen   97 LHLPLTPETRGLINAEFLAKMKPGAVLVNVA  127 (178)
T ss_dssp             E-SSSSTTTTTSBSHHHHHTSTTTEEEEESS
T ss_pred             hhhccccccceeeeeeeeeccccceEEEecc
Confidence            8777421     1256778888888888776

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.78  E-value=0.00023  Score=48.66  Aligned_cols=93  Identities=27%  Similarity=0.388  Sum_probs=62.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChHHHHHHHHc----CC-CEEEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           95 PETNVLIMGSGPIGLVTMLAARA-FGAPRIVIVDVDDYRLSVAKKL----GA-DNIVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~-~g~~~vv~~~~~~~~~~~~~~~----g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      |+.+||.+|+|. |..++.+++. .++ +++++|.+++..+.+++.    +. ..+..+.   .++ ....    ....+
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~---~d~-~~~~----~~~~~   70 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRITFVQ---GDA-EFDP----DFLEP   70 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEE---SCC-HGGT----TTSSC
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE---Ccc-ccCc----ccCCC
Confidence            578999999875 7788888884 566 599999999888777542    22 2222211   222 1111    13457


Q ss_pred             ccEEEEcC-CC---------HHHHHHHHHHhhcCCEEEE
Q 048013          169 IDVSFDCA-GF---------NKTMSTALSATRAGGKVCL  197 (216)
Q Consensus       169 ~d~vi~~~-g~---------~~~~~~~~~~l~~~G~~v~  197 (216)
                      ||+|+... ..         ...++.+.+.|+|+|++++
T Consensus        71 ~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi  109 (112)
T PF12847_consen   71 FDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI  109 (112)
T ss_dssp             EEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence            99999877 21         1246888899999999985

...

>PRK12742 oxidoreductase; Provisional

Probab=97.78  E-value=0.0011  Score=51.52  Aligned_cols=102  Identities=18%  Similarity=0.263  Sum_probs=62.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChHHHHHH-HHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV-DDYRLSVA-KKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~-~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      .++++||+|+ |++|..+++.+...|++ |+.+.+ ++++.+.+ ++++...+ ..+..  +.. .+.++.+. ..++|+
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~~-v~~~~~~~~~~~~~l~~~~~~~~~-~~D~~--~~~-~~~~~~~~-~~~id~   78 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGAN-VRFTYAGSKDAAERLAQETGATAV-QTDSA--DRD-AVIDVVRK-SGALDI   78 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEecCCCHHHHHHHHHHhCCeEE-ecCCC--CHH-HHHHHHHH-hCCCcE
Confidence            4689999996 89999999999999995 666543 44444433 44554432 22221  211 12222222 246999


Q ss_pred             EEEcCCCH----------H---------------HHHHHHHHhhcCCEEEEeccCC
Q 048013          172 SFDCAGFN----------K---------------TMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       172 vi~~~g~~----------~---------------~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +|+++|..          +               ..+.+++.++.+|+++.++...
T Consensus        79 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~  134 (237)
T PRK12742         79 LVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVN  134 (237)
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence            99998741          0               1134445566788999887543

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.77  E-value=0.00047  Score=57.48  Aligned_cols=99  Identities=16%  Similarity=0.180  Sum_probs=65.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcC---CCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLG---ADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      .+|||+|+|.+|+.+++.+.+.+-..|.+.+++.++.+.+....   ... +.++..+.  . .+.++.    .++|+||
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~-~~vD~~d~--~-al~~li----~~~d~VI   73 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEA-LQVDAADV--D-ALVALI----KDFDLVI   73 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcccccee-EEecccCh--H-HHHHHH----hcCCEEE
Confidence            47899999999999999988888446999999998888876553   222 22222221  1 232322    2469999


Q ss_pred             EcCCCHHHHHHHHHH-hhcCCEEEEeccCCCC
Q 048013          174 DCAGFNKTMSTALSA-TRAGGKVCLVGMGHRE  204 (216)
Q Consensus       174 ~~~g~~~~~~~~~~~-l~~~G~~v~~g~~~~~  204 (216)
                      ++.+..-. ..+++. ++.+=.++........
T Consensus        74 n~~p~~~~-~~i~ka~i~~gv~yvDts~~~~~  104 (389)
T COG1748          74 NAAPPFVD-LTILKACIKTGVDYVDTSYYEEP  104 (389)
T ss_pred             EeCCchhh-HHHHHHHHHhCCCEEEcccCCch
Confidence            99998444 355544 4445567777654443

>PRK08339 short chain dehydrogenase; Provisional

Probab=97.75  E-value=0.0015  Score=51.81  Aligned_cols=106  Identities=15%  Similarity=0.175  Sum_probs=67.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-Hc----CCC-EEEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KL----GAD-NIVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~----g~~-~~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||.|+ +++|.++++.+...|++ |++++++.++.+.+. ++    +.. ..+..+- +.++..+.++++. . -
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~-~-~   83 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGAD-VILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELK-N-I   83 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHH-h-h
Confidence            4789999996 89999999999999995 888899887755432 22    322 1222221 2223334444442 2 2


Q ss_pred             CCccEEEEcCCCH----------H---------------HHHHHHHHhhc--CCEEEEeccCCC
Q 048013          167 TGIDVSFDCAGFN----------K---------------TMSTALSATRA--GGKVCLVGMGHR  203 (216)
Q Consensus       167 ~~~d~vi~~~g~~----------~---------------~~~~~~~~l~~--~G~~v~~g~~~~  203 (216)
                      +++|++++++|..          +               ..+.+++.|..  .|+++.++....
T Consensus        84 g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~  147 (263)
T PRK08339         84 GEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAI  147 (263)
T ss_pred             CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccc
Confidence            4699999998741          0               23556666643  489998875443

>PRK07109 short chain dehydrogenase; Provisional

Probab=97.75  E-value=0.0017  Score=53.54  Aligned_cols=107  Identities=20%  Similarity=0.276  Sum_probs=67.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEE-EeCC-CCcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNI-VKVS-TNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~-~~~~-~~~~~~~~~~~~~~~~~~~  167 (216)
                      ++++++|+|+ |++|..+++.+...|++ |+++++++++.+.+    ++.+.... +..| .+.++..+.+.++.+.. .
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~~-Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~-g   84 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGAK-VVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL-G   84 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC-C
Confidence            4678999996 89999999999889995 88888988765543    33454322 2112 12223333344433223 3


Q ss_pred             CccEEEEcCCCH-------------------------HHHHHHHHHhhc--CCEEEEeccCCC
Q 048013          168 GIDVSFDCAGFN-------------------------KTMSTALSATRA--GGKVCLVGMGHR  203 (216)
Q Consensus       168 ~~d~vi~~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~~~~  203 (216)
                      ++|++|+++|..                         ...+.+++.+..  .|+++.++....
T Consensus        85 ~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~  147 (334)
T PRK07109         85 PIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALA  147 (334)
T ss_pred             CCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhh
Confidence            799999999841                         022345666654  589998886444

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.75  E-value=0.00055  Score=52.83  Aligned_cols=104  Identities=20%  Similarity=0.230  Sum_probs=68.7

Q ss_pred             HHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHHH----HcCCCEEEeCCCCcccHHHHHHH
Q 048013           86 HACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVAK----KLGADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        86 ~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~  160 (216)
                      .+++...++++++||-+|+|. |..++.+++..+. ..|+.++.+++..+.++    +++.+.+....   .+..+..  
T Consensus        68 ~~~~~l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~---~d~~~~~--  141 (215)
T TIGR00080        68 MMTELLELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIV---GDGTQGW--  141 (215)
T ss_pred             HHHHHhCCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEE---CCcccCC--
Confidence            344566788999999999875 6677777777653 25999999988766553    35554332211   1211111  


Q ss_pred             HHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEe
Q 048013          161 IQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~  198 (216)
                         ....+||+|+-........+...+.|+++|+++..
T Consensus       142 ---~~~~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       142 ---EPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMP  176 (215)
T ss_pred             ---cccCCCCEEEEcCCcccccHHHHHhcCcCcEEEEE
Confidence               11347999887655556667888999999998754

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK07825 short chain dehydrogenase; Provisional

Probab=97.75  E-value=0.0015  Score=51.92  Aligned_cols=81  Identities=27%  Similarity=0.298  Sum_probs=53.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEEeCCC-CcccHHHHHHHHHHHcCCCccEE
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      +++++|+|+ |++|..+++.+...|++ |+++++++++.+.+ ++++....+..|- +.+++.+.+.++.+.. .++|++
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id~l   82 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGAR-VAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADL-GPIDVL   82 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence            578999996 89999999988889995 88888988876644 4444222222222 2233344444443322 479999


Q ss_pred             EEcCCC
Q 048013          173 FDCAGF  178 (216)
Q Consensus       173 i~~~g~  178 (216)
                      |.++|.
T Consensus        83 i~~ag~   88 (273)
T PRK07825         83 VNNAGV   88 (273)
T ss_pred             EECCCc
Confidence            999884

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.73  E-value=0.0022  Score=51.39  Aligned_cols=106  Identities=18%  Similarity=0.242  Sum_probs=67.6

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCChH---HHHHH-HHcCCCEEEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS---GPIGLVTMLAARAFGAPRIVIVDVDDY---RLSVA-KKLGADNIVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga---g~~G~~~i~~a~~~g~~~vv~~~~~~~---~~~~~-~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+   +++|.++++.+...|++ |+.++++++   +.+.+ ++++....+..|- +.+...+.+.++.+.. 
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~-Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~-   81 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAE-LAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDL-   81 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHc-
Confidence            4689999985   48999999999889995 888888753   22322 3455432222222 2233444445544333 


Q ss_pred             CCccEEEEcCCCH--------------H---------------HHHHHHHHhhcCCEEEEeccCC
Q 048013          167 TGIDVSFDCAGFN--------------K---------------TMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       167 ~~~d~vi~~~g~~--------------~---------------~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +++|++++++|..              +               ..+.+++.|..+|+++.++...
T Consensus        82 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~  146 (274)
T PRK08415         82 GKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLG  146 (274)
T ss_pred             CCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCC
Confidence            4799999999831              0               2456677777789999887543

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.72  E-value=0.0018  Score=50.27  Aligned_cols=82  Identities=27%  Similarity=0.268  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCC-C--EEEeCC-CCcccHHHHHHHHHHHcCCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGA-D--NIVKVS-TNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~-~--~~~~~~-~~~~~~~~~~~~~~~~~~~~  168 (216)
                      .+++++|+|+ |.+|..+++.+...|++ |++++++.++.+.+ +++.. .  ..+..+ .+..+..+.+.++.+. ..+
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~   82 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGYK-VAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAA-FGG   82 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHH-cCC
Confidence            4688999996 99999999988888995 88899988765543 33321 1  122212 1222333344444322 247


Q ss_pred             ccEEEEcCCC
Q 048013          169 IDVSFDCAGF  178 (216)
Q Consensus       169 ~d~vi~~~g~  178 (216)
                      +|++|.+.+.
T Consensus        83 ~d~vi~~ag~   92 (237)
T PRK07326         83 LDVLIANAGV   92 (237)
T ss_pred             CCEEEECCCC
Confidence            9999998864

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.72  E-value=0.00066  Score=49.62  Aligned_cols=96  Identities=19%  Similarity=0.290  Sum_probs=63.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .-.|++++|.|-|.+|.-.++.++.+|++ |++++.++-+.-.+..-|.. +..           +.+.    -...|++
T Consensus        20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~-V~V~e~DPi~alqA~~dGf~-v~~-----------~~~a----~~~adi~   82 (162)
T PF00670_consen   20 MLAGKRVVVIGYGKVGKGIARALRGLGAR-VTVTEIDPIRALQAAMDGFE-VMT-----------LEEA----LRDADIF   82 (162)
T ss_dssp             --TTSEEEEE--SHHHHHHHHHHHHTT-E-EEEE-SSHHHHHHHHHTT-E-EE------------HHHH----TTT-SEE
T ss_pred             eeCCCEEEEeCCCcccHHHHHHHhhCCCE-EEEEECChHHHHHhhhcCcE-ecC-----------HHHH----HhhCCEE
Confidence            56899999999999999999999999994 99999998665555444443 221           2222    2358999


Q ss_pred             EEcCCCHHH-HHHHHHHhhcCCEEEEeccCCCCC
Q 048013          173 FDCAGFNKT-MSTALSATRAGGKVCLVGMGHREM  205 (216)
Q Consensus       173 i~~~g~~~~-~~~~~~~l~~~G~~v~~g~~~~~~  205 (216)
                      |.++|..+. ..+-++.|+++..+..+|....++
T Consensus        83 vtaTG~~~vi~~e~~~~mkdgail~n~Gh~d~Ei  116 (162)
T PF00670_consen   83 VTATGNKDVITGEHFRQMKDGAILANAGHFDVEI  116 (162)
T ss_dssp             EE-SSSSSSB-HHHHHHS-TTEEEEESSSSTTSB
T ss_pred             EECCCCccccCHHHHHHhcCCeEEeccCcCceeE
Confidence            999998554 367888999999988888544333

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.71  E-value=0.00089  Score=49.92  Aligned_cols=91  Identities=18%  Similarity=0.271  Sum_probs=63.1

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCC
Q 048013           99 VLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG  177 (216)
Q Consensus        99 vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  177 (216)
                      |+|.|+ |.+|..+++.+...|. .|+++.|++++.+.  ..+.+ ++..+-  .+. +.+.+..    .++|+||.+++
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~~~~~--~~~~~-~~~~d~--~d~-~~~~~al----~~~d~vi~~~~   69 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPSKAED--SPGVE-IIQGDL--FDP-DSVKAAL----KGADAVIHAAG   69 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGGGHHH--CTTEE-EEESCT--TCH-HHHHHHH----TTSSEEEECCH
T ss_pred             eEEECCCChHHHHHHHHHHHCCC-EEEEEecCchhccc--ccccc-cceeee--hhh-hhhhhhh----hhcchhhhhhh
Confidence            688997 9999999999999997 59999999887766  33333 222222  222 2233321    27999999999


Q ss_pred             C----HHHHHHHHHHhhcCC--EEEEecc
Q 048013          178 F----NKTMSTALSATRAGG--KVCLVGM  200 (216)
Q Consensus       178 ~----~~~~~~~~~~l~~~G--~~v~~g~  200 (216)
                      .    .+..+..++.++..|  +++.++.
T Consensus        70 ~~~~~~~~~~~~~~a~~~~~~~~~v~~s~   98 (183)
T PF13460_consen   70 PPPKDVDAAKNIIEAAKKAGVKRVVYLSS   98 (183)
T ss_dssp             STTTHHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred             hhcccccccccccccccccccccceeeec
Confidence            4    355677777776665  7777764

...

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.71  E-value=0.0014  Score=56.16  Aligned_cols=81  Identities=25%  Similarity=0.354  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh--HHHH-HHHHcCCCEE-EeCCCCcccHHHHHHHHHHHcCCCc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDD--YRLS-VAKKLGADNI-VKVSTNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~--~~~~-~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      +++++||+|+ |++|..+++.+...|++ +++++++.  ++.+ ..++++...+ .++ .+.....+.+..+.+. ..++
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga~-vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv-~~~~~~~~~~~~~~~~-~g~i  285 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGAH-VVCLDVPAAGEALAAVANRVGGTALALDI-TAPDAPARIAEHLAER-HGGL  285 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCCccHHHHHHHHHHcCCeEEEEeC-CCHHHHHHHHHHHHHh-CCCC
Confidence            4688999996 99999999999999995 88887743  3333 3344554432 232 1222233333333322 3479


Q ss_pred             cEEEEcCCC
Q 048013          170 DVSFDCAGF  178 (216)
Q Consensus       170 d~vi~~~g~  178 (216)
                      |++|.++|.
T Consensus       286 d~vi~~AG~  294 (450)
T PRK08261        286 DIVVHNAGI  294 (450)
T ss_pred             CEEEECCCc
Confidence            999999983

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.70  E-value=0.002  Score=50.31  Aligned_cols=82  Identities=15%  Similarity=0.128  Sum_probs=51.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH---cCCC-EEEeCCCCc-ccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK---LGAD-NIVKVSTNL-QDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~---~g~~-~~~~~~~~~-~~~~~~~~~~~~~~~~  167 (216)
                      ++++++|+|+ |++|..++..+...|++ ++++++++++.+.. ++   .+.. ..+..+-.+ ++..+.+.++.+ ...
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~-~~~   83 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGAT-VAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAA-ALG   83 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH-HcC
Confidence            4788999996 99999999999989995 88888887765433 22   2322 222222222 222233333322 224


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.++|.
T Consensus        84 ~id~vi~~ag~   94 (250)
T PRK12939         84 GLDGLVNNAGI   94 (250)
T ss_pred             CCCEEEECCCC
Confidence            79999999985

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.70  E-value=0.0017  Score=52.50  Aligned_cols=81  Identities=28%  Similarity=0.441  Sum_probs=55.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCC-EE----EeCCCCcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGAD-NI----VKVSTNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~-~~----~~~~~~~~~~~~~~~~~~~~~~~  167 (216)
                      +++++||+|+ |++|..+++.+...|++ |+++++++++.+.+ ++++.. .+    .++ .+.++..+.+.++.+.. .
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv-~d~~~v~~~~~~~~~~~-g   84 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGAK-LALVDLEEAELAALAAELGGDDRVLTVVADV-TDLAAMQAAAEEAVERF-G   84 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhcCCCcEEEEEecC-CCHHHHHHHHHHHHHHc-C
Confidence            5789999996 89999999999999995 88899988876644 445421 11    122 12233344444443322 4


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|+++|.
T Consensus        85 ~id~vI~nAG~   95 (296)
T PRK05872         85 GIDVVVANAGI   95 (296)
T ss_pred             CCCEEEECCCc
Confidence            79999999984

>PRK08017 oxidoreductase; Provisional

Probab=97.69  E-value=0.00053  Score=53.93  Aligned_cols=80  Identities=20%  Similarity=0.314  Sum_probs=54.5

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEE-eCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIV-KVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      ++++|+|+ |++|..+++.+...|++ |++++++.++.+.+++.+..... ++ .+.....+.+..+....+..+|.++.
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~i~~~~~~~~~~ii~   80 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYR-VLAACRKPDDVARMNSLGFTGILLDL-DDPESVERAADEVIALTDNRLYGLFN   80 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHhHHHHhCCCeEEEeec-CCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence            57999997 99999999999989985 88899998888777766654332 22 12222233333332223457899998


Q ss_pred             cCCC
Q 048013          175 CAGF  178 (216)
Q Consensus       175 ~~g~  178 (216)
                      +.|.
T Consensus        81 ~ag~   84 (256)
T PRK08017         81 NAGF   84 (256)
T ss_pred             CCCC
Confidence            8773

>PRK08265 short chain dehydrogenase; Provisional

Probab=97.69  E-value=0.0018  Score=51.32  Aligned_cols=106  Identities=21%  Similarity=0.235  Sum_probs=67.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCE-EEeCC-CCcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADN-IVKVS-TNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .+++++|.|+ |++|..+++.+...|++ |++++++.++.+.+ ++++... .+..+ .+.++..+.+.++.+.. ..+|
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-g~id   82 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGAR-VAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARF-GRVD   82 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHh-CCCC
Confidence            4689999996 89999999999999994 89999988765543 4454322 12222 12233344444443332 4699


Q ss_pred             EEEEcCCCH---------H---------------HHHHHHHHh-hcCCEEEEeccCC
Q 048013          171 VSFDCAGFN---------K---------------TMSTALSAT-RAGGKVCLVGMGH  202 (216)
Q Consensus       171 ~vi~~~g~~---------~---------------~~~~~~~~l-~~~G~~v~~g~~~  202 (216)
                      +++.+.|..         +               ..+.+++.| +.+|+++.++...
T Consensus        83 ~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~  139 (261)
T PRK08265         83 ILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSIS  139 (261)
T ss_pred             EEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchh
Confidence            999998741         0               223444555 5678999887543

>PRK12828 short chain dehydrogenase; Provisional

Probab=97.68  E-value=0.0019  Score=49.97  Aligned_cols=81  Identities=20%  Similarity=0.160  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHH-H---HHcCCCEEE-eCCCCcccHHHHHHHHHHHcCCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSV-A---KKLGADNIV-KVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~-~---~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      +++++||+|+ |.+|..+++.+...|++ |+.++++.++... +   +..+...+. ++ .+.++..+.+.++.+. -.+
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~~-~~~   82 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGAR-VALIGRGAAPLSQTLPGVPADALRIGGIDL-VDPQAARRAVDEVNRQ-FGR   82 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCCe-EEEEeCChHhHHHHHHHHhhcCceEEEeec-CCHHHHHHHHHHHHHH-hCC
Confidence            4789999996 99999999999888995 8999887765332 2   222332221 22 1222333333333322 247


Q ss_pred             ccEEEEcCCC
Q 048013          169 IDVSFDCAGF  178 (216)
Q Consensus       169 ~d~vi~~~g~  178 (216)
                      +|++|.+++.
T Consensus        83 ~d~vi~~ag~   92 (239)
T PRK12828         83 LDALVNIAGA   92 (239)
T ss_pred             cCEEEECCcc
Confidence            9999998874

>PRK08267 short chain dehydrogenase; Provisional

Probab=97.68  E-value=0.0015  Score=51.60  Aligned_cols=81  Identities=23%  Similarity=0.328  Sum_probs=52.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-HcC-CC-EEEeCCC-CcccHHHHHHHHHHHcCCCccE
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KLG-AD-NIVKVST-NLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~g-~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      +++||+|+ |++|..+++.+...|++ |++++++.++.+.+. .++ .. ..+..|- +..+..+.+.++.+....++|+
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~   80 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWR-VGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDV   80 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence            57899996 89999999988889985 888899888766553 333 11 1222222 2223333344433222457999


Q ss_pred             EEEcCCC
Q 048013          172 SFDCAGF  178 (216)
Q Consensus       172 vi~~~g~  178 (216)
                      ++.++|.
T Consensus        81 vi~~ag~   87 (260)
T PRK08267         81 LFNNAGI   87 (260)
T ss_pred             EEECCCC
Confidence            9999985

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.68  E-value=0.001  Score=53.08  Aligned_cols=108  Identities=20%  Similarity=0.326  Sum_probs=70.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHH----HHHHHHcCCC--EEEeCCCCcccHHHHHHHHHHHcC
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYR----LSVAKKLGAD--NIVKVSTNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~----~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      -+|+.|||+|+ +++|.+.++=....|++ ++..|.+++.    .+..++.|-.  ...++ ++.++..+..+++.++.|
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~~-~vl~Din~~~~~etv~~~~~~g~~~~y~cdi-s~~eei~~~a~~Vk~e~G  113 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGAK-LVLWDINKQGNEETVKEIRKIGEAKAYTCDI-SDREEIYRLAKKVKKEVG  113 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCCe-EEEEeccccchHHHHHHHHhcCceeEEEecC-CCHHHHHHHHHHHHHhcC
Confidence            46889999996 69999987777778884 8888888754    3333444422  22233 233455555556655544


Q ss_pred             CCccEEEEcCCCH----------H---------------HHHHHHHHh--hcCCEEEEeccCCCC
Q 048013          167 TGIDVSFDCAGFN----------K---------------TMSTALSAT--RAGGKVCLVGMGHRE  204 (216)
Q Consensus       167 ~~~d~vi~~~g~~----------~---------------~~~~~~~~l--~~~G~~v~~g~~~~~  204 (216)
                       .+|++++++|-.          +               ..++.+..|  .++|.+|.++...+.
T Consensus       114 -~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~  177 (300)
T KOG1201|consen  114 -DVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGL  177 (300)
T ss_pred             -CceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcc
Confidence             899999999952          1               224444544  368999998765543

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.68  E-value=0.0026  Score=50.39  Aligned_cols=82  Identities=17%  Similarity=0.247  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-H---cCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-K---LGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~---~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      +++++||+|+ |++|..+++.+...|+ +|++++++.++.+.+. .   .+... .+..+- +.+...+.+.++.+.. .
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~   86 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAF-G   86 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc-C
Confidence            5789999996 8999999999999999 5888999887655432 2   23221 222222 2222333334433222 4


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.++|.
T Consensus        87 ~id~vi~~Ag~   97 (263)
T PRK07814         87 RLDIVVNNVGG   97 (263)
T ss_pred             CCCEEEECCCC
Confidence            79999999873

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.68  E-value=0.0023  Score=50.42  Aligned_cols=104  Identities=19%  Similarity=0.204  Sum_probs=63.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChHHHHHHHHcCCCEEEeCC-CCcccHHHHHHHHHHHcCCCccE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV-DDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      .+++++|+|+ |++|..+++.+...|++ |+++.+ +++..+.++..+... +..+ .+.++..+.+.++.+. ..++|+
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~~-v~~~~~~~~~~~~~l~~~~~~~-~~~Dl~~~~~~~~~~~~~~~~-~~~id~   82 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGAK-VAVLYNSAENEAKELREKGVFT-IKCDVGNRDQVKKSKEVVEKE-FGRVDV   82 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCcHHHHHHHHhCCCeE-EEecCCCHHHHHHHHHHHHHH-cCCCCE
Confidence            4688999996 89999999999889996 665544 444444444433322 2212 2223344444444332 247999


Q ss_pred             EEEcCCCH----------H---------------HHHHHHHHhh--cCCEEEEeccC
Q 048013          172 SFDCAGFN----------K---------------TMSTALSATR--AGGKVCLVGMG  201 (216)
Q Consensus       172 vi~~~g~~----------~---------------~~~~~~~~l~--~~G~~v~~g~~  201 (216)
                      +|.++|..          +               ..+.+++.+.  ..|+++.++..
T Consensus        83 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~  139 (255)
T PRK06463         83 LVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASN  139 (255)
T ss_pred             EEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCH
Confidence            99998741          0               1345556664  45889888753

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=97.67  E-value=0.00011  Score=54.49  Aligned_cols=103  Identities=17%  Similarity=0.251  Sum_probs=68.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeC-CCC--------------cccHHHHHH
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKV-STN--------------LQDIAEEVE  159 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~-~~~--------------~~~~~~~~~  159 (216)
                      ++.+|+|+|+|.+|..++.+++.+|++ +++.+...++++..+..+...+... ...              .+.....+.
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~-v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~   97 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAE-VVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA   97 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-E-EEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCE-EEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence            347899999999999999999999995 9999999998888888777654331 110              122222333


Q ss_pred             HHHHHcCCCccEEEEcCC--C---HH-HHHHHHHHhhcCCEEEEeccCC
Q 048013          160 KIQKAMGTGIDVSFDCAG--F---NK-TMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g--~---~~-~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +..    ..+|++|.+.-  +   +. ..+..++.|+++..++.++...
T Consensus        98 ~~i----~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D~  142 (168)
T PF01262_consen   98 EFI----APADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCDQ  142 (168)
T ss_dssp             HHH----HH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGGG
T ss_pred             HHH----hhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEecC
Confidence            321    25899886332  1   11 2377888999999999997533

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK08177 short chain dehydrogenase; Provisional

Probab=97.66  E-value=0.0018  Score=50.07  Aligned_cols=78  Identities=19%  Similarity=0.229  Sum_probs=51.0

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCc-ccHHHHHHHHHHHcCCCccEEEE
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      ++++|.|+ |++|..+++.+...|++ |++++++.++.+.+++++....+..+-.+ ++..+.+.++   .+.++|++|.
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~---~~~~id~vi~   77 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQ-VTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRL---QGQRFDLLFV   77 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCE-EEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHh---hcCCCCEEEE
Confidence            57899996 99999999888889994 89999988776666554333333222222 2222233332   2347999999


Q ss_pred             cCCC
Q 048013          175 CAGF  178 (216)
Q Consensus       175 ~~g~  178 (216)
                      ++|.
T Consensus        78 ~ag~   81 (225)
T PRK08177         78 NAGI   81 (225)
T ss_pred             cCcc
Confidence            8764

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=97.66  E-value=0.0018  Score=47.42  Aligned_cols=80  Identities=21%  Similarity=0.258  Sum_probs=51.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC--hHHHH-H---HHHcCCCEEEe--CC-CCcccHHHHHHHHHHHcC
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVD--DYRLS-V---AKKLGADNIVK--VS-TNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~--~~~~~-~---~~~~g~~~~~~--~~-~~~~~~~~~~~~~~~~~~  166 (216)
                      ++++|+|+ +++|..+++.+...|..+|+.+.++  .++.+ .   ++..+ ..+..  .+ .+.++..+.++++. ...
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~-~~~   78 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVI-KRF   78 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHH-HHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-cccccccccccccccccccccccc-ccc
Confidence            47899996 8999999988888877678888888  44333 2   23344 33222  22 12233444444443 234


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      ..+|++|.+.|.
T Consensus        79 ~~ld~li~~ag~   90 (167)
T PF00106_consen   79 GPLDILINNAGI   90 (167)
T ss_dssp             SSESEEEEECSC
T ss_pred             cccccccccccc
Confidence            579999999986

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.65  E-value=0.00017  Score=57.65  Aligned_cols=102  Identities=21%  Similarity=0.360  Sum_probs=61.6

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----HcCCCEEEeCCCCcccHHHHHHHHH
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KLGADNIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~  162 (216)
                      .+++.++++|++||.+|+|- |..++.+++..|++ |++++.+++..+.++    +.|....+.+..  .|+    +++ 
T Consensus        54 ~~~~~~l~~G~~vLDiGcGw-G~~~~~~a~~~g~~-v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~--~D~----~~~-  124 (273)
T PF02353_consen   54 LCEKLGLKPGDRVLDIGCGW-GGLAIYAAERYGCH-VTGITLSEEQAEYARERIREAGLEDRVEVRL--QDY----RDL-  124 (273)
T ss_dssp             HHTTTT--TT-EEEEES-TT-SHHHHHHHHHH--E-EEEEES-HHHHHHHHHHHHCSTSSSTEEEEE--S-G----GG--
T ss_pred             HHHHhCCCCCCEEEEeCCCc-cHHHHHHHHHcCcE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEE--eec----ccc-
Confidence            34778999999999999873 66777888888995 999999998877664    355432111101  122    122 


Q ss_pred             HHcCCCccEEEE-----cCCC---HHHHHHHHHHhhcCCEEEEecc
Q 048013          163 KAMGTGIDVSFD-----CAGF---NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       163 ~~~~~~~d~vi~-----~~g~---~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                         ...||.|+.     .+|.   +..++.+.+.|+|+|++++-.+
T Consensus       125 ---~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i  167 (273)
T PF02353_consen  125 ---PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI  167 (273)
T ss_dssp             -----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred             ---CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence               227898765     3442   3567889999999999975443

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK07576 short chain dehydrogenase; Provisional

Probab=97.65  E-value=0.0033  Score=49.86  Aligned_cols=106  Identities=19%  Similarity=0.250  Sum_probs=65.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCCC-cccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVSTN-LQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~~-~~~~~~~~~~~~~~~~~  167 (216)
                      ++++++|+|+ |++|..+++.+...|++ |+.++++.++.+..    .+.+... .+..+-. .++..+.++++... ..
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~-~~   85 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADE-FG   85 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHH-cC
Confidence            5789999996 89999999999999995 88888887664432    2223221 2222222 22333334444322 34


Q ss_pred             CccEEEEcCCCH-------------------------HHHHHHHHHhh-cCCEEEEeccCC
Q 048013          168 GIDVSFDCAGFN-------------------------KTMSTALSATR-AGGKVCLVGMGH  202 (216)
Q Consensus       168 ~~d~vi~~~g~~-------------------------~~~~~~~~~l~-~~G~~v~~g~~~  202 (216)
                      ++|++|.+.|..                         ..++.+++.++ .+|+++.++...
T Consensus        86 ~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~  146 (264)
T PRK07576         86 PIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQ  146 (264)
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChh
Confidence            799999988630                         12234445553 568999888643

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.64  E-value=0.0031  Score=49.87  Aligned_cols=106  Identities=17%  Similarity=0.211  Sum_probs=65.7

Q ss_pred             CCCEEEEEcCC---HHHHHHHHHHHHcCCCeEEEEcCChHHH---HH-HHHcCCCEEEeCC-CCcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGSG---PIGLVTMLAARAFGAPRIVIVDVDDYRL---SV-AKKLGADNIVKVS-TNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Gag---~~G~~~i~~a~~~g~~~vv~~~~~~~~~---~~-~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|++   ++|.++++.+...|++ |++++++++..   +. .++++....+..| .+.++..+.+.++.+.. 
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~-v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-   86 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAE-LAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEW-   86 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCE-EEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHc-
Confidence            57899999853   8999999999889995 88888875432   22 2334432222222 22233444444443333 


Q ss_pred             CCccEEEEcCCCH--------------H---------------HHHHHHHHhhcCCEEEEeccCC
Q 048013          167 TGIDVSFDCAGFN--------------K---------------TMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       167 ~~~d~vi~~~g~~--------------~---------------~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +.+|++++++|..              +               ..+.+++.|+.+|+++.++...
T Consensus        87 g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~  151 (258)
T PRK07533         87 GRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYG  151 (258)
T ss_pred             CCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence            4699999998731              0               2355666777778988877543

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.64  E-value=0.0025  Score=50.48  Aligned_cols=106  Identities=16%  Similarity=0.217  Sum_probs=63.5

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEEEeCC-CCcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-G--PIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNIVKVS-TNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g--~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~  166 (216)
                      .+++++|.|+ +  ++|.++++.+...|++ |+..+++++..+.+    ++.+....+..| .+.++..+.+.++.+.. 
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~-v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~-   84 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGAE-LWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKW-   84 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCCE-EEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHc-
Confidence            5688999996 4  7999999888889995 77777764322222    233433222222 22233444444444333 


Q ss_pred             CCccEEEEcCCCH--------------H---------------HHHHHHHHhhcCCEEEEeccCC
Q 048013          167 TGIDVSFDCAGFN--------------K---------------TMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       167 ~~~d~vi~~~g~~--------------~---------------~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +.+|++++++|..              +               ..+..++.++.+|+++.++...
T Consensus        85 g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~  149 (260)
T PRK06603         85 GSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYG  149 (260)
T ss_pred             CCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCc
Confidence            4699999988731              0               1233445666779999887544

>PRK06500 short chain dehydrogenase; Provisional

Probab=97.63  E-value=0.0029  Score=49.42  Aligned_cols=82  Identities=26%  Similarity=0.318  Sum_probs=53.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEE-EeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNI-VKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      ++++++|.|+ |++|..+++.+...|++ |+.+++++++.+.+ ++++.... +..+. +.++..+.+..+.+. ..++|
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~id   82 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGAR-VAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEA-FGRLD   82 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHH-hCCCC
Confidence            4678999996 99999999999999995 88888887765543 44554322 21111 122222333333322 34799


Q ss_pred             EEEEcCCC
Q 048013          171 VSFDCAGF  178 (216)
Q Consensus       171 ~vi~~~g~  178 (216)
                      ++|.++|.
T Consensus        83 ~vi~~ag~   90 (249)
T PRK06500         83 AVFINAGV   90 (249)
T ss_pred             EEEECCCC
Confidence            99999874

>PRK06484 short chain dehydrogenase; Validated

Probab=97.63  E-value=0.002  Score=56.29  Aligned_cols=107  Identities=21%  Similarity=0.256  Sum_probs=70.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-HcCCCEE-EeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KLGADNI-VKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .++++||+|+ +++|..+++.+...|++ |+.++++.++.+.+. +++.... +..+- +.++..+.+.++.+.. +.+|
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g~id  345 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGDR-LLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARW-GRLD  345 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHc-CCCC
Confidence            4678999996 89999999999999994 899999887776554 3554321 22222 2223334444443322 4699


Q ss_pred             EEEEcCCCH--------------------------HHHHHHHHHhhcCCEEEEeccCCC
Q 048013          171 VSFDCAGFN--------------------------KTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       171 ~vi~~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      ++|.++|..                          ...+.+++.|+.+|+++.++....
T Consensus       346 ~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~  404 (520)
T PRK06484        346 VLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIAS  404 (520)
T ss_pred             EEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhh
Confidence            999998741                          023555666666799998885443

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.63  E-value=0.0021  Score=50.72  Aligned_cols=107  Identities=15%  Similarity=0.190  Sum_probs=66.5

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCE--EEeCC-CCcccHHHHHHHHHHHcCCC
Q 048013           95 PETNVLIMGS---GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADN--IVKVS-TNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        95 ~~~~vlv~Ga---g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~  168 (216)
                      .+++++|.|+   +++|.++++.+...|++ |+.++++++..+.++++....  .+..| .+.++..+.+.++.+.. ..
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~-g~   83 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGAT-VIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERV-GK   83 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHh-CC
Confidence            5789999986   48999999999889995 888888754444444442222  12221 12233344444444333 46


Q ss_pred             ccEEEEcCCCH-----------------------------HHHHHHHHHhhcCCEEEEeccCCC
Q 048013          169 IDVSFDCAGFN-----------------------------KTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       169 ~d~vi~~~g~~-----------------------------~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      +|++++++|..                             ...+..++.|+.+|+++.++....
T Consensus        84 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~  147 (252)
T PRK06079         84 IDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGS  147 (252)
T ss_pred             CCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCc
Confidence            99999988731                             013445566767789888875443

>PRK14967 putative methyltransferase; Provisional

Probab=97.63  E-value=0.00048  Score=53.44  Aligned_cols=100  Identities=26%  Similarity=0.347  Sum_probs=65.3

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      +....++++++||..|+|. |..++.+++. +..+++++|.+++..+.+++    .+....+.    ..++.+.   +  
T Consensus        29 l~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~----~~d~~~~---~--   97 (223)
T PRK14967         29 LAAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVR----RGDWARA---V--   97 (223)
T ss_pred             HHhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEE----ECchhhh---c--
Confidence            4445577889999999987 8888887774 65469999999987765543    34322111    1232221   1  


Q ss_pred             HcCCCccEEEEcCCC---------------------------HHHHHHHHHHhhcCCEEEEec
Q 048013          164 AMGTGIDVSFDCAGF---------------------------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~---------------------------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                       ....||+|+.+.+-                           ...++.+.+.|+++|+++++-
T Consensus        98 -~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~  159 (223)
T PRK14967         98 -EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ  159 (223)
T ss_pred             -cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence             23579999986320                           123466788999999998753

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.61  E-value=0.00042  Score=53.10  Aligned_cols=102  Identities=19%  Similarity=0.236  Sum_probs=67.4

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHH----HcCCCE-EEeCCCCcccHHHHHHHH
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAK----KLGADN-IVKVSTNLQDIAEEVEKI  161 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~----~~g~~~-~~~~~~~~~~~~~~~~~~  161 (216)
                      ++...++++++||-+|+|. |..++.+++..+ ..+|+.++.+++-.+.++    +.+... +....   .+..+.+.  
T Consensus        65 ~~~l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~---~d~~~~~~--  138 (205)
T PRK13944         65 CELIEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYH---GDGKRGLE--  138 (205)
T ss_pred             HHhcCCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE---CCcccCCc--
Confidence            4556778899999999875 777777777664 226999999987665553    344431 21111   11111110  


Q ss_pred             HHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEe
Q 048013          162 QKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~  198 (216)
                         ....||.|+-+.......+.+++.|+++|+++..
T Consensus       139 ---~~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        139 ---KHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIP  172 (205)
T ss_pred             ---cCCCccEEEEccCcchhhHHHHHhcCcCcEEEEE
Confidence               1347999998777656668888999999999764

>PRK09072 short chain dehydrogenase; Provisional

Probab=97.61  E-value=0.0017  Score=51.34  Aligned_cols=81  Identities=23%  Similarity=0.317  Sum_probs=51.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-Hc--CCC-EEEeCCCCc-ccHHHHHHHHHHHcCCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KL--GAD-NIVKVSTNL-QDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~--g~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~  168 (216)
                      ++++++|+|+ |++|..+++.+...|++ |+++++++++.+.+. ++  +.. ..+..+-.+ +...+....+.+  .++
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~--~~~   80 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGAR-LLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARARE--MGG   80 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHh--cCC
Confidence            4678999986 99999999999889995 889999887765443 22  211 122222111 222223333322  357


Q ss_pred             ccEEEEcCCC
Q 048013          169 IDVSFDCAGF  178 (216)
Q Consensus       169 ~d~vi~~~g~  178 (216)
                      +|+++.++|.
T Consensus        81 id~lv~~ag~   90 (263)
T PRK09072         81 INVLINNAGV   90 (263)
T ss_pred             CCEEEECCCC
Confidence            8999999875

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.61  E-value=0.0025  Score=50.26  Aligned_cols=84  Identities=20%  Similarity=0.241  Sum_probs=54.6

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-cCCC--EEEeCCCCc-ccHHHHHHHHHHHcCC
Q 048013           93 IGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-LGAD--NIVKVSTNL-QDIAEEVEKIQKAMGT  167 (216)
Q Consensus        93 ~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~g~~--~~~~~~~~~-~~~~~~~~~~~~~~~~  167 (216)
                      .-+++++||+|+ |++|..+++.+...|++ |+.++++.+..+.+.+ ....  ..+..+-.+ +...+.+.++.+.. .
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~   85 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERF-G   85 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHh-C
Confidence            357789999996 99999999999999995 8999998776655433 3222  222222222 22233333433222 4


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|+||.++|.
T Consensus        86 ~~d~vi~~ag~   96 (264)
T PRK12829         86 GLDVLVNNAGI   96 (264)
T ss_pred             CCCEEEECCCC
Confidence            79999998885

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.60  E-value=0.0023  Score=48.23  Aligned_cols=103  Identities=18%  Similarity=0.314  Sum_probs=60.4

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCc
Q 048013           91 ANIGPETNVLIMGSGPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        91 ~~~~~~~~vlv~Gag~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      ..++++++||.+|+|+-+ .+..+++.. +..+++++|.++..    ...+.. .+..+..+.+..+.+.+.  ..+.++
T Consensus        28 ~~i~~g~~VLDiG~GtG~-~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~-~~~~d~~~~~~~~~l~~~--~~~~~~   99 (188)
T TIGR00438        28 KLIKPGDTVLDLGAAPGG-WSQVAVEQVGGKGRVIAVDLQPMK----PIENVD-FIRGDFTDEEVLNKIRER--VGDDKV   99 (188)
T ss_pred             cccCCCCEEEEecCCCCH-HHHHHHHHhCCCceEEEEeccccc----cCCCce-EEEeeCCChhHHHHHHHH--hCCCCc
Confidence            557899999999987634 444455544 33369999998754    111222 221111111222222222  235579


Q ss_pred             cEEEEcC-----CC------------HHHHHHHHHHhhcCCEEEEeccC
Q 048013          170 DVSFDCA-----GF------------NKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       170 d~vi~~~-----g~------------~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      |+|+...     |.            ...+..+.+.|+|+|++++....
T Consensus       100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~  148 (188)
T TIGR00438       100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ  148 (188)
T ss_pred             cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence            9999632     21            24667889999999999986543

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=97.59  E-value=0.00043  Score=55.42  Aligned_cols=98  Identities=18%  Similarity=0.288  Sum_probs=71.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      ..|.|+|.|-+|.-+++.|.-+|+. |.+.|.|.++++.++.+-...+..+.....++++.+        .+.|++|.++
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~-Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v--------~~aDlvIgaV  239 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGAD-VTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAV--------KKADLVIGAV  239 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCCe-eEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHh--------hhccEEEEEE
Confidence            4577789999999999999999996 999999999999887644333333223333333322        3588988864


Q ss_pred             CC------HHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          177 GF------NKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       177 g~------~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      =-      .-..++.++.|+|++.++.+....+
T Consensus       240 LIpgakaPkLvt~e~vk~MkpGsVivDVAiDqG  272 (371)
T COG0686         240 LIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQG  272 (371)
T ss_pred             EecCCCCceehhHHHHHhcCCCcEEEEEEEcCC
Confidence            32      1356788999999999999987555

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.57  E-value=0.0011  Score=50.00  Aligned_cols=96  Identities=22%  Similarity=0.276  Sum_probs=62.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----HcCCCEEEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KLGADNIVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      ++++.+||.+|+|. |..++.+++.....+|+.+|.+++..+.++    +.+.+.+..+.   .+.    .++.  ....
T Consensus        43 l~~g~~VLDiGcGt-G~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~---~d~----~~~~--~~~~  112 (187)
T PRK00107         43 LPGGERVLDVGSGA-GFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVH---GRA----EEFG--QEEK  112 (187)
T ss_pred             cCCCCeEEEEcCCC-CHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEe---ccH----hhCC--CCCC
Confidence            45689999999864 666666666543336999999988766553    35554332221   122    1221  1457


Q ss_pred             ccEEEEcCCC--HHHHHHHHHHhhcCCEEEEe
Q 048013          169 IDVSFDCAGF--NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       169 ~d~vi~~~g~--~~~~~~~~~~l~~~G~~v~~  198 (216)
                      +|+|+.....  ++.++.+.+.|+|+|+++.+
T Consensus       113 fDlV~~~~~~~~~~~l~~~~~~LkpGG~lv~~  144 (187)
T PRK00107        113 FDVVTSRAVASLSDLVELCLPLLKPGGRFLAL  144 (187)
T ss_pred             ccEEEEccccCHHHHHHHHHHhcCCCeEEEEE
Confidence            9999975433  36678899999999999877

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.57  E-value=0.0051  Score=48.04  Aligned_cols=82  Identities=17%  Similarity=0.170  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcC--CC-EEEeCCC-CcccHHHHHHHHHHHcCCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLG--AD-NIVKVST-NLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g--~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~  168 (216)
                      +++++||+|+ |++|..+++.+...|++ |++++++.++.+.+ ..+.  .. ..+..+- +.+++.+.+.++... ..+
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~   81 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALER-FGS   81 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH-hCC
Confidence            4678999996 99999999999889996 99999998765544 3332  11 1222221 222333333433222 346


Q ss_pred             ccEEEEcCCC
Q 048013          169 IDVSFDCAGF  178 (216)
Q Consensus       169 ~d~vi~~~g~  178 (216)
                      +|++|.++|.
T Consensus        82 ~d~vi~~ag~   91 (251)
T PRK07231         82 VDILVNNAGT   91 (251)
T ss_pred             CCEEEECCCC
Confidence            9999999874

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.56  E-value=0.0021  Score=56.28  Aligned_cols=47  Identities=15%  Similarity=0.156  Sum_probs=38.8

Q ss_pred             HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH
Q 048013           89 RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA  136 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~  136 (216)
                      +..+.+.++++||.|+ |.+|..+++.+...|++ |++++++.++.+.+
T Consensus        73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~-Vval~Rn~ekl~~l  120 (576)
T PLN03209         73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGFR-VRAGVRSAQRAESL  120 (576)
T ss_pred             cccccCCCCEEEEECCCCHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHH
Confidence            3456778999999996 99999999999989995 88888988876543

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.55  E-value=0.00076  Score=57.12  Aligned_cols=97  Identities=12%  Similarity=0.151  Sum_probs=63.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHH-HHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccE
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLS-VAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      ...+++++|+|+|++|.+++..+...|+..++++.|+.++.+ ++++++....+.       +. .+.+.    -..+|+
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~-------~~-~l~~~----l~~aDi  245 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHY-------LS-ELPQL----IKKADI  245 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEec-------HH-HHHHH----hccCCE
Confidence            346789999999999999999999999878999999987755 445565222222       11 12221    135999


Q ss_pred             EEEcCCCHHHHHHHHHHhhcCC-EEEEeccCC
Q 048013          172 SFDCAGFNKTMSTALSATRAGG-KVCLVGMGH  202 (216)
Q Consensus       172 vi~~~g~~~~~~~~~~~l~~~G-~~v~~g~~~  202 (216)
                      ||+|++.+...-. ...++... .++.++.|.
T Consensus       246 VI~aT~a~~~vi~-~~~~~~~~~~~iDLavPR  276 (414)
T PRK13940        246 IIAAVNVLEYIVT-CKYVGDKPRVFIDISIPQ  276 (414)
T ss_pred             EEECcCCCCeeEC-HHHhCCCCeEEEEeCCCC
Confidence            9999998654311 11122111 467777654

>PRK06398 aldose dehydrogenase; Validated

Probab=97.55  E-value=0.0019  Score=51.10  Aligned_cols=100  Identities=13%  Similarity=0.253  Sum_probs=62.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCC-CCcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .++++||+|+ +++|..+++.+...|++ |+.++++++...     .. ..+..+ .+.++..+.+.++.+.. .++|++
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~~-Vi~~~r~~~~~~-----~~-~~~~~D~~~~~~i~~~~~~~~~~~-~~id~l   76 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGSN-VINFDIKEPSYN-----DV-DYFKVDVSNKEQVIKGIDYVISKY-GRIDIL   76 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCCccccC-----ce-EEEEccCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence            4689999996 89999999999999995 888888764321     11 112111 12233444444443332 469999


Q ss_pred             EEcCCCH----------H---------------HHHHHHHHh--hcCCEEEEeccCC
Q 048013          173 FDCAGFN----------K---------------TMSTALSAT--RAGGKVCLVGMGH  202 (216)
Q Consensus       173 i~~~g~~----------~---------------~~~~~~~~l--~~~G~~v~~g~~~  202 (216)
                      |+++|..          +               ..+.+++.|  ...|+++.++...
T Consensus        77 i~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~  133 (258)
T PRK06398         77 VNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQ  133 (258)
T ss_pred             EECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcch
Confidence            9998741          0               234455555  3458899887543

>PRK06180 short chain dehydrogenase; Provisional

Probab=97.55  E-value=0.0043  Score=49.53  Aligned_cols=82  Identities=21%  Similarity=0.141  Sum_probs=53.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc-CCC-EEEeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL-GAD-NIVKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~-g~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+.+. +.. ..+..+- +.+...+.+.++.+. -.++|
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~-~~~~d   80 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHR-VVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEAT-FGPID   80 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCE-EEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHH-hCCCC
Confidence            3578999996 99999999999889985 99999988877655443 221 1222222 122233333433322 24699


Q ss_pred             EEEEcCCC
Q 048013          171 VSFDCAGF  178 (216)
Q Consensus       171 ~vi~~~g~  178 (216)
                      +++.++|.
T Consensus        81 ~vv~~ag~   88 (277)
T PRK06180         81 VLVNNAGY   88 (277)
T ss_pred             EEEECCCc
Confidence            99999885

>PRK07062 short chain dehydrogenase; Provisional

Probab=97.54  E-value=0.0055  Score=48.48  Aligned_cols=82  Identities=22%  Similarity=0.357  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-H----cCCCEE--EeCCC-CcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-K----LGADNI--VKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~----~g~~~~--~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      .+++++|.|+ +++|..+++.+...|++ |+.+++++++.+... +    .+...+  +..+- +.++..+.+.++.+..
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF   85 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            4689999996 89999999999999995 888989887655432 2    222122  11111 2223333344443333


Q ss_pred             CCCccEEEEcCCC
Q 048013          166 GTGIDVSFDCAGF  178 (216)
Q Consensus       166 ~~~~d~vi~~~g~  178 (216)
                       .++|++|+++|.
T Consensus        86 -g~id~li~~Ag~   97 (265)
T PRK07062         86 -GGVDMLVNNAGQ   97 (265)
T ss_pred             -CCCCEEEECCCC
Confidence             469999999984

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.54  E-value=0.004  Score=49.74  Aligned_cols=107  Identities=21%  Similarity=0.216  Sum_probs=65.2

Q ss_pred             CCCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCCh---HHHHHH-HHcCCCEEEeCCC-CcccHHHHHHHHHHHc
Q 048013           94 GPETNVLIMGS---GPIGLVTMLAARAFGAPRIVIVDVDD---YRLSVA-KKLGADNIVKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        94 ~~~~~vlv~Ga---g~~G~~~i~~a~~~g~~~vv~~~~~~---~~~~~~-~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      -.++++||.|+   +++|.++++.+...|++ |+.+.+++   ++.+.+ ++++....+..|- +.++..+.+.++.+..
T Consensus         8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~-V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   86 (272)
T PRK08159          8 MAGKRGLILGVANNRSIAWGIAKACRAAGAE-LAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKW   86 (272)
T ss_pred             ccCCEEEEECCCCCCcHHHHHHHHHHHCCCE-EEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhc
Confidence            35688999986   58999999999999995 77776653   233322 3445322222222 2233344444443333


Q ss_pred             CCCccEEEEcCCCH--------------H---------------HHHHHHHHhhcCCEEEEeccCC
Q 048013          166 GTGIDVSFDCAGFN--------------K---------------TMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       166 ~~~~d~vi~~~g~~--------------~---------------~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                       .++|++++++|..              +               ..+.+++.++.+|+++.++...
T Consensus        87 -g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~  151 (272)
T PRK08159         87 -GKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYG  151 (272)
T ss_pred             -CCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence             4799999998731              0               2344556666679998887543

>PRK08589 short chain dehydrogenase; Validated

Probab=97.54  E-value=0.0048  Score=49.15  Aligned_cols=82  Identities=23%  Similarity=0.375  Sum_probs=51.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc---CCC-EEEeCC-CCcccHHHHHHHHHHHcCCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL---GAD-NIVKVS-TNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~---g~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~  168 (216)
                      +++++||.|+ +++|..+++.+...|++ |++++++++..+.++++   +.. ..+..+ .+.++..+.+.++.+.. ++
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~~-vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-g~   82 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGAY-VLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQF-GR   82 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHc-CC
Confidence            5789999996 89999999998889995 88888884333333333   322 122222 12233334444444333 46


Q ss_pred             ccEEEEcCCC
Q 048013          169 IDVSFDCAGF  178 (216)
Q Consensus       169 ~d~vi~~~g~  178 (216)
                      +|++|+++|.
T Consensus        83 id~li~~Ag~   92 (272)
T PRK08589         83 VDVLFNNAGV   92 (272)
T ss_pred             cCEEEECCCC
Confidence            9999999874

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=97.54  E-value=0.0027  Score=49.63  Aligned_cols=107  Identities=22%  Similarity=0.380  Sum_probs=75.6

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      ...+..+|++||-.|+|. |-.++.+++..|-..|+++|.+++-++.+++    .+...+.-+.   .|+    .++. -
T Consensus        45 ~~~~~~~g~~vLDva~GT-Gd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~---~dA----e~LP-f  115 (238)
T COG2226          45 SLLGIKPGDKVLDVACGT-GDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVV---GDA----ENLP-F  115 (238)
T ss_pred             HhhCCCCCCEEEEecCCc-cHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEE---ech----hhCC-C
Confidence            445666899999998774 8899999999875579999999987776643    3333211111   121    1221 2


Q ss_pred             cCCCccEEEEcCCC------HHHHHHHHHHhhcCCEEEEeccCCCC
Q 048013          165 MGTGIDVSFDCAGF------NKTMSTALSATRAGGKVCLVGMGHRE  204 (216)
Q Consensus       165 ~~~~~d~vi~~~g~------~~~~~~~~~~l~~~G~~v~~g~~~~~  204 (216)
                      .+.-||++.-+.|-      +..++++.|.|+|+|+++.+.+..+.
T Consensus       116 ~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~  161 (238)
T COG2226         116 PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPD  161 (238)
T ss_pred             CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence            35678998887773      45789999999999999999887664

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.53  E-value=0.0031  Score=48.23  Aligned_cols=35  Identities=40%  Similarity=0.550  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      .+.+|+|+|+|++|..+++.+...|..++..+|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            45789999999999999999999999889999877

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=97.52  E-value=0.0037  Score=49.17  Aligned_cols=82  Identities=20%  Similarity=0.285  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|..+++.+...|++ |+.+++++++.+.+    +..+... .+..+- +.++..+.+.++.+ ...
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~   86 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGAE-VILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEA-EIG   86 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHH-hcC
Confidence            5789999996 99999999999889995 88888887765433    2223222 121121 22233333443332 235


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.++|.
T Consensus        87 ~~d~li~~ag~   97 (255)
T PRK07523         87 PIDILVNNAGM   97 (255)
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.52  E-value=0.0049  Score=49.01  Aligned_cols=81  Identities=17%  Similarity=0.205  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCC---HHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGSG---PIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Gag---~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      ++++++|+|++   ++|.++++.+...|++ |+.+++++...+.+++    .+....+..|- +.++..+.+.++.+.. 
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~~-vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~-   82 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVW-   82 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCCE-EEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhc-
Confidence            56889999963   8999999999889995 7777776422222322    22222222222 2233444444444323 


Q ss_pred             CCccEEEEcCC
Q 048013          167 TGIDVSFDCAG  177 (216)
Q Consensus       167 ~~~d~vi~~~g  177 (216)
                      ..+|++|+++|
T Consensus        83 g~iD~linnAg   93 (262)
T PRK07984         83 PKFDGFVHSIG   93 (262)
T ss_pred             CCCCEEEECCc
Confidence            46999999997

>PRK07806 short chain dehydrogenase; Provisional

Probab=97.52  E-value=0.0045  Score=48.37  Aligned_cols=104  Identities=22%  Similarity=0.229  Sum_probs=61.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChH-HHHH----HHHcCCCE-EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDY-RLSV----AKKLGADN-IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~-~~~~----~~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .+++++|.|+ |++|..+++.+...|++ |++++++.+ +.+.    ++..+... .+..+- +.++..+.+.++.+. .
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~~-V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~   82 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGAH-VVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREE-F   82 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCCE-EEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh-C
Confidence            4678999996 89999999998889985 777777643 3322    22223221 122121 222333334443322 2


Q ss_pred             CCccEEEEcCCCH-------------------HHHHHHHHHhhcCCEEEEecc
Q 048013          167 TGIDVSFDCAGFN-------------------KTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       167 ~~~d~vi~~~g~~-------------------~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      .++|+++.+++..                   ..++.+.+.+..+|+++.++.
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS  135 (248)
T PRK07806         83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS  135 (248)
T ss_pred             CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence            4699999888641                   233555555556788888864

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.51  E-value=0.0015  Score=51.38  Aligned_cols=81  Identities=23%  Similarity=0.314  Sum_probs=53.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEEeCCC-CcccHHHHHHHHHHHcCCCccE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      ++++++|+|+ |++|..+++.+...|++ |+++++++.+.+.. ++++... +..+- +.+...+.+.++.+. ..++|+
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~~~~~~~~~-~~~id~   82 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGAT-VVVGDIDPEAGKAAADEVGGLF-VPTDVTDEDAVNALFDTAAET-YGSVDI   82 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHcCCcE-EEeeCCCHHHHHHHHHHHHHH-cCCCCE
Confidence            5789999996 99999999999999995 88888887765543 4454432 22222 222333344444322 246999


Q ss_pred             EEEcCCC
Q 048013          172 SFDCAGF  178 (216)
Q Consensus       172 vi~~~g~  178 (216)
                      +|.++|.
T Consensus        83 vi~~ag~   89 (255)
T PRK06057         83 AFNNAGI   89 (255)
T ss_pred             EEECCCc
Confidence            9998874

>PRK07402 precorrin-6B methylase; Provisional

Probab=97.50  E-value=0.0055  Score=46.48  Aligned_cols=104  Identities=13%  Similarity=0.303  Sum_probs=63.2

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      ....++++++||-+|+|. |..++.+++......|+++|.+++..+.+++    ++...+..+.   .+..+.+..+   
T Consensus        34 ~~l~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~---~d~~~~~~~~---  106 (196)
T PRK07402         34 SQLRLEPDSVLWDIGAGT-GTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIE---GSAPECLAQL---  106 (196)
T ss_pred             HhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEE---CchHHHHhhC---
Confidence            555678889999998764 5566666665432369999999887766643    5554332221   2222222221   


Q ss_pred             cCCCccE-EEEcCCC-HHHHHHHHHHhhcCCEEEEecc
Q 048013          165 MGTGIDV-SFDCAGF-NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       165 ~~~~~d~-vi~~~g~-~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                       ...+|. .++.... ...++.+.+.|+|+|+++..-.
T Consensus       107 -~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        107 -APAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             -CCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEee
Confidence             122344 4443222 3667889999999999987753

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.49  E-value=0.0035  Score=51.55  Aligned_cols=100  Identities=10%  Similarity=0.091  Sum_probs=67.9

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHH-HHcCCCeEEEEcCChHHHHHH-HHc----CCCEEEeCCCCcccHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAA-RAFGAPRIVIVDVDDYRLSVA-KKL----GADNIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a-~~~g~~~vv~~~~~~~~~~~~-~~~----g~~~~~~~~~~~~~~~~~~~~~~  162 (216)
                      +....+..++++|+|+|..|...+..+ ...+++.|.+++++.++.+.+ +++    +... ..+    .+..+.+    
T Consensus       120 ~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~-~~~----~~~~~~~----  190 (325)
T PRK08618        120 KYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEI-YVV----NSADEAI----  190 (325)
T ss_pred             HHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcE-EEe----CCHHHHH----
Confidence            444455678899999999998777654 456888899999998886543 333    3332 122    1222222    


Q ss_pred             HHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          163 KAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                          ...|+|+.+++..... .. ..++++-.+..+|...+
T Consensus       191 ----~~aDiVi~aT~s~~p~-i~-~~l~~G~hV~~iGs~~p  225 (325)
T PRK08618        191 ----EEADIIVTVTNAKTPV-FS-EKLKKGVHINAVGSFMP  225 (325)
T ss_pred             ----hcCCEEEEccCCCCcc-hH-HhcCCCcEEEecCCCCc
Confidence                3689999999985443 33 88899999999996544

>PRK09242 tropinone reductase; Provisional

Probab=97.49  E-value=0.0088  Score=47.08  Aligned_cols=82  Identities=22%  Similarity=0.282  Sum_probs=52.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-Hc-----CCCE-EEeCCC-CcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KL-----GADN-IVKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~-----g~~~-~~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      .+++++|.|+ |++|..+++.+...|++ |++++++.++.+.+. ++     +... .+..+- +.++..+.+.++.+..
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~-v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGAD-VLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW   86 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4789999996 89999999999999995 888888887655432 22     2221 111121 1223333344443333


Q ss_pred             CCCccEEEEcCCC
Q 048013          166 GTGIDVSFDCAGF  178 (216)
Q Consensus       166 ~~~~d~vi~~~g~  178 (216)
                       .++|+++.+.|.
T Consensus        87 -g~id~li~~ag~   98 (257)
T PRK09242         87 -DGLHILVNNAGG   98 (257)
T ss_pred             -CCCCEEEECCCC
Confidence             479999999984

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=97.49  E-value=0.0083  Score=47.12  Aligned_cols=82  Identities=32%  Similarity=0.467  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc---CCCE-EEeCCCC-cccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL---GADN-IVKVSTN-LQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~---g~~~-~~~~~~~-~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|..+++.+...|++ ++.++++.++.+.+ +++   +... .+..+-. .++..+.+.++.+. ..
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~~-vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~   85 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGAE-IIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKD-IG   85 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHh-cC
Confidence            5788999996 89999999999989985 88898887665433 222   3221 2222222 22333334443322 24


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|+++.+.|.
T Consensus        86 ~id~vi~~ag~   96 (254)
T PRK08085         86 PIDVLINNAGI   96 (254)
T ss_pred             CCCEEEECCCc
Confidence            69999999984

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.48  E-value=0.0012  Score=47.92  Aligned_cols=105  Identities=25%  Similarity=0.304  Sum_probs=66.9

Q ss_pred             HHHHHcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHH-HHHcCCCEE-EeCCCCcccHHHHHHHHH
Q 048013           86 HACRRANI-GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV-AKKLGADNI-VKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        86 ~~l~~~~~-~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~-~~~~g~~~~-~~~~~~~~~~~~~~~~~~  162 (216)
                      ++++..+. .++++++|+|+|.+|...++.+...|...+++++++.++.+. +++++.... ...    .+.    .+. 
T Consensus         8 ~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~----~~~----~~~-   78 (155)
T cd01065           8 RALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAY----LDL----EEL-   78 (155)
T ss_pred             HHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceee----cch----hhc-
Confidence            34444333 457889999999999999999888874468899999877654 455554310 011    111    111 


Q ss_pred             HHcCCCccEEEEcCCCHHH----HHHHHHHhhcCCEEEEeccCC
Q 048013          163 KAMGTGIDVSFDCAGFNKT----MSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~~~~----~~~~~~~l~~~G~~v~~g~~~  202 (216)
                         -.++|+++.+++....    .......++++..++.++..+
T Consensus        79 ---~~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~  119 (155)
T cd01065          79 ---LAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNP  119 (155)
T ss_pred             ---cccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCC
Confidence               2469999999987332    112234467778888887654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.48  E-value=0.0038  Score=49.38  Aligned_cols=107  Identities=16%  Similarity=0.208  Sum_probs=64.2

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCCh---HHHHHH-HHcCCCE--EEeCC-CCcccHHHHHHHHHHH
Q 048013           95 PETNVLIMGS---GPIGLVTMLAARAFGAPRIVIVDVDD---YRLSVA-KKLGADN--IVKVS-TNLQDIAEEVEKIQKA  164 (216)
Q Consensus        95 ~~~~vlv~Ga---g~~G~~~i~~a~~~g~~~vv~~~~~~---~~~~~~-~~~g~~~--~~~~~-~~~~~~~~~~~~~~~~  164 (216)
                      .+++++|+|+   +++|.++++.+...|++ |+.++++.   ++.+.+ +++....  .+..| .+.++..+.++++.+.
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   84 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAK-LVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE   84 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence            4689999985   59999999999889995 77776542   333333 3342111  12111 2223344444444333


Q ss_pred             cCCCccEEEEcCCCH--------------H---------------HHHHHHHHhhcCCEEEEeccCCC
Q 048013          165 MGTGIDVSFDCAGFN--------------K---------------TMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       165 ~~~~~d~vi~~~g~~--------------~---------------~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      . +++|++++++|..              +               ..+.+++.|.++|+++.++....
T Consensus        85 ~-g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~  151 (257)
T PRK08594         85 V-GVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGG  151 (257)
T ss_pred             C-CCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCC
Confidence            2 4799999987621              0               12345566677899998885444

>PRK00811 spermidine synthase; Provisional

Probab=97.48  E-value=0.00092  Score=53.84  Aligned_cols=98  Identities=18%  Similarity=0.187  Sum_probs=64.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCC--------C-EEEeCCCCcccHHHHHHHHHHH
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGA--------D-NIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~--------~-~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      .++++||++|+|. |..+..+++..+..+|++++.+++-.+.++++-.        + .+..   ...|..+.+.+    
T Consensus        75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v---~~~Da~~~l~~----  146 (283)
T PRK00811         75 PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVEL---VIGDGIKFVAE----  146 (283)
T ss_pred             CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEE---EECchHHHHhh----
Confidence            4568999999865 6666777776676679999999998888866311        1 1111   11233333322    


Q ss_pred             cCCCccEEEEcCCC----------HHHHHHHHHHhhcCCEEEEec
Q 048013          165 MGTGIDVSFDCAGF----------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       165 ~~~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ....+|+||.....          .+.++.+.+.|+++|.++.-.
T Consensus       147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~  191 (283)
T PRK00811        147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS  191 (283)
T ss_pred             CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence            35579998875422          244577889999999998653

>PRK07832 short chain dehydrogenase; Provisional

Probab=97.48  E-value=0.0063  Score=48.43  Aligned_cols=79  Identities=25%  Similarity=0.392  Sum_probs=49.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEE----EeCCCCcccHHHHHHHHHHHcCC
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNI----VKVSTNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~  167 (216)
                      ++++|+|+ |++|..+++.+...|++ |+.+++++++.+..    +..+....    .++ .+.+...+.+.++.+. ..
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~-vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~~-~~   77 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAE-LFLTDRDADGLAQTVADARALGGTVPEHRALDI-SDYDAVAAFAADIHAA-HG   77 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeC-CCHHHHHHHHHHHHHh-cC
Confidence            36899986 89999999999889985 88888887665433    22333221    222 1222333333444322 34


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.++|.
T Consensus        78 ~id~lv~~ag~   88 (272)
T PRK07832         78 SMDVVMNIAGI   88 (272)
T ss_pred             CCCEEEECCCC
Confidence            69999999974

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.47  E-value=0.0019  Score=52.66  Aligned_cols=91  Identities=24%  Similarity=0.289  Sum_probs=61.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEc
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC  175 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  175 (216)
                      .+|.|+|+|.+|...+..++..|. ..|+++++++++.+.+++.|......     .+.    .+.    -...|+||.|
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~-----~~~----~~~----~~~aDvViia   73 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVT-----TSA----AEA----VKGADLVILC   73 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceec-----CCH----HHH----hcCCCEEEEC
Confidence            679999999999999999888885 35889999998888887777532111     111    111    1357888888


Q ss_pred             CCCHH---HHHHHHHHhhcCCEEEEecc
Q 048013          176 AGFNK---TMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       176 ~g~~~---~~~~~~~~l~~~G~~v~~g~  200 (216)
                      +....   .++.....++++..++.+|.
T Consensus        74 vp~~~~~~v~~~l~~~l~~~~iv~dvgs  101 (307)
T PRK07502         74 VPVGASGAVAAEIAPHLKPGAIVTDVGS  101 (307)
T ss_pred             CCHHHHHHHHHHHHhhCCCCCEEEeCcc
Confidence            88632   22333345566666766664

>PRK06179 short chain dehydrogenase; Provisional

Probab=97.47  E-value=0.0034  Score=49.78  Aligned_cols=79  Identities=20%  Similarity=0.248  Sum_probs=51.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEE-EeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNI-VKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .+++++|+|+ |++|..+++.+...|++ |++++++.++.+...  +...+ .++ .+.+++.+.+.++.+. .+++|++
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~-V~~~~r~~~~~~~~~--~~~~~~~D~-~d~~~~~~~~~~~~~~-~g~~d~l   77 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYR-VFGTSRNPARAAPIP--GVELLELDV-TDDASVQAAVDEVIAR-AGRIDVL   77 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCChhhccccC--CCeeEEeec-CCHHHHHHHHHHHHHh-CCCCCEE
Confidence            3568999996 99999999988889995 888888866543221  22221 122 2233444445554333 3469999


Q ss_pred             EEcCCC
Q 048013          173 FDCAGF  178 (216)
Q Consensus       173 i~~~g~  178 (216)
                      |.++|.
T Consensus        78 i~~ag~   83 (270)
T PRK06179         78 VNNAGV   83 (270)
T ss_pred             EECCCC
Confidence            999984

>PRK06101 short chain dehydrogenase; Provisional

Probab=97.46  E-value=0.0048  Score=48.15  Aligned_cols=41  Identities=24%  Similarity=0.246  Sum_probs=34.0

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK  138 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~  138 (216)
                      .+++|.|+ |++|..++..+...|++ |+++++++++.+.+.+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~   43 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQ-VIACGRNQSVLDELHT   43 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCE-EEEEECCHHHHHHHHH
Confidence            56899986 99999988888889995 8999999887766644

>PRK08643 acetoin reductase; Validated

Probab=97.46  E-value=0.0075  Score=47.41  Aligned_cols=81  Identities=21%  Similarity=0.277  Sum_probs=51.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH---cCCCE-EEeCCC-CcccHHHHHHHHHHHcCCC
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK---LGADN-IVKVST-NLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~---~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~  168 (216)
                      ++++||+|+ |++|..+++.+...|++ |+.++++.++.+.+ .+   .+... .+..+- +.+...+.+.++.+. ..+
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~~   79 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFK-VAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDT-FGD   79 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH-cCC
Confidence            568899986 89999999999999995 88888887665433 22   23222 122221 222333344444332 247


Q ss_pred             ccEEEEcCCC
Q 048013          169 IDVSFDCAGF  178 (216)
Q Consensus       169 ~d~vi~~~g~  178 (216)
                      +|++|.++|.
T Consensus        80 id~vi~~ag~   89 (256)
T PRK08643         80 LNVVVNNAGV   89 (256)
T ss_pred             CCEEEECCCC
Confidence            9999999874

>PRK07063 short chain dehydrogenase; Provisional

Probab=97.44  E-value=0.007  Score=47.73  Aligned_cols=82  Identities=26%  Similarity=0.317  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc-----CCCE-EEeCC-CCcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL-----GADN-IVKVS-TNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~-----g~~~-~~~~~-~~~~~~~~~~~~~~~~~  165 (216)
                      .+++++|.|+ |++|..+++.+...|++ |+.+++++++.+.+ +++     +... .+..+ .+.++..+.+.++.+..
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~-vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGAA-VALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4688999996 89999999999999995 88888887765543 222     2211 12211 12233344444443333


Q ss_pred             CCCccEEEEcCCC
Q 048013          166 GTGIDVSFDCAGF  178 (216)
Q Consensus       166 ~~~~d~vi~~~g~  178 (216)
                       +++|++|.++|.
T Consensus        85 -g~id~li~~ag~   96 (260)
T PRK07063         85 -GPLDVLVNNAGI   96 (260)
T ss_pred             -CCCcEEEECCCc
Confidence             479999999883

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=97.44  E-value=0.0018  Score=51.27  Aligned_cols=81  Identities=25%  Similarity=0.238  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-cCCCE-EEeCC-CCcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-LGADN-IVKVS-TNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      ++++++|+|+ |++|..+++.+...|++ |++++++.++.+.+.+ .+... .+..+ .+.++..+.++++.+.. +++|
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g~id   81 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGAR-VAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAF-GKID   81 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHh-CCCC
Confidence            4689999996 89999999999999995 8888998877665544 33221 11111 12223334444443322 4689


Q ss_pred             EEEEcCC
Q 048013          171 VSFDCAG  177 (216)
Q Consensus       171 ~vi~~~g  177 (216)
                      ++|.+.|
T Consensus        82 ~li~~Ag   88 (262)
T TIGR03325        82 CLIPNAG   88 (262)
T ss_pred             EEEECCC
Confidence            9999986

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.44  E-value=0.0043  Score=48.26  Aligned_cols=101  Identities=21%  Similarity=0.246  Sum_probs=65.3

Q ss_pred             HHHHHHcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCC--eEEEEcCC----hHH--------HHHHHHcCCCEEEeCCC
Q 048013           85 VHACRRAN-IGPETNVLIMGSGPIGLVTMLAARAFGAP--RIVIVDVD----DYR--------LSVAKKLGADNIVKVST  149 (216)
Q Consensus        85 ~~~l~~~~-~~~~~~vlv~Gag~~G~~~i~~a~~~g~~--~vv~~~~~----~~~--------~~~~~~~g~~~~~~~~~  149 (216)
                      ..+++..+ --.+.+++|+|+|+.|..++..+...|++  ++++++++    .++        .++++.++...   .  
T Consensus        13 ~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~--   87 (226)
T cd05311          13 LNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---T--   87 (226)
T ss_pred             HHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---c--
Confidence            34554443 34668999999999999999999999998  89999998    333        23344443211   0  


Q ss_pred             CcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEec
Q 048013          150 NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g  199 (216)
                       ..++.+.   +     .++|++|++++..-..+..++.|.++..++.+.
T Consensus        88 -~~~l~~~---l-----~~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~ls  128 (226)
T cd05311          88 -GGTLKEA---L-----KGADVFIGVSRPGVVKKEMIKKMAKDPIVFALA  128 (226)
T ss_pred             -cCCHHHH---H-----hcCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeC
Confidence             0122121   1     248999999974122256777787877776655

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=97.44  E-value=0.0069  Score=47.49  Aligned_cols=79  Identities=24%  Similarity=0.292  Sum_probs=50.8

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-cCCCE-EEeCC-CCcccHHHHHHHHHHHcCCCccEEE
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-LGADN-IVKVS-TNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      +++|+|+ |++|..+++.+...|++ |+++++++++.+.+.. ++... .+..+ .+.++..+.+.++.+. .+++|.++
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~-~~~id~vi   79 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGHK-VIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAE-WRNIDVLV   79 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHH-cCCCCEEE
Confidence            6889996 99999999999999995 8899998877665533 44332 11111 1222333334443322 34799999


Q ss_pred             EcCCC
Q 048013          174 DCAGF  178 (216)
Q Consensus       174 ~~~g~  178 (216)
                      .++|.
T Consensus        80 ~~ag~   84 (248)
T PRK10538         80 NNAGL   84 (248)
T ss_pred             ECCCc
Confidence            98874

>PRK08862 short chain dehydrogenase; Provisional

Probab=97.43  E-value=0.0022  Score=49.88  Aligned_cols=82  Identities=16%  Similarity=0.211  Sum_probs=54.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCC-CCcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVS-TNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~~  167 (216)
                      ++++++|.|+ +++|.+++..+...|++ |+.+++++++.+.+    ++.+... .+..+ .+.++..+.+.++.+..+.
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~-V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGAT-LILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNR   82 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            4688999996 79999999988889995 88888888776543    2334332 12211 2223344444555444444


Q ss_pred             CccEEEEcCC
Q 048013          168 GIDVSFDCAG  177 (216)
Q Consensus       168 ~~d~vi~~~g  177 (216)
                      .+|++|.++|
T Consensus        83 ~iD~li~nag   92 (227)
T PRK08862         83 APDVLVNNWT   92 (227)
T ss_pred             CCCEEEECCc
Confidence            7999999986

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.43  E-value=0.0082  Score=47.24  Aligned_cols=82  Identities=23%  Similarity=0.286  Sum_probs=51.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHH--HHHHHHcCCCE-EEeCC-CCcccHHHHHHHHHHHcCCCc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYR--LSVAKKLGADN-IVKVS-TNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~--~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      +++++||+|+ +++|.++++.+...|++ |+.+++++..  .+.+++.+... .+..+ .+.++..+.+.++.+.. +++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~-vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-g~i   84 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGAD-IVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVM-GHI   84 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHc-CCC
Confidence            5789999996 89999999999999995 7777765422  23344444332 12222 22233444444443333 469


Q ss_pred             cEEEEcCCC
Q 048013          170 DVSFDCAGF  178 (216)
Q Consensus       170 d~vi~~~g~  178 (216)
                      |+++.+.|.
T Consensus        85 D~lv~~ag~   93 (251)
T PRK12481         85 DILINNAGI   93 (251)
T ss_pred             CEEEECCCc
Confidence            999999874

>PRK01581 speE spermidine synthase; Validated

Probab=97.42  E-value=0.0053  Score=50.85  Aligned_cols=99  Identities=16%  Similarity=0.152  Sum_probs=65.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcC-----------CCEEEeCCCCcccHHHHHHHH
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLG-----------ADNIVKVSTNLQDIAEEVEKI  161 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g-----------~~~~~~~~~~~~~~~~~~~~~  161 (216)
                      ....++||++|+|. |..+..+++..+..+|++++.+++-.+.++++.           ...+..   ...|..+.+.+ 
T Consensus       148 h~~PkrVLIIGgGd-G~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~v---vi~Da~~fL~~-  222 (374)
T PRK01581        148 VIDPKRVLILGGGD-GLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNV---HVCDAKEFLSS-  222 (374)
T ss_pred             CCCCCEEEEECCCH-HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEE---EECcHHHHHHh-
Confidence            45567999999763 666677777655567999999999888888631           111111   11233333332 


Q ss_pred             HHHcCCCccEEEEcCCC-----------HHHHHHHHHHhhcCCEEEEec
Q 048013          162 QKAMGTGIDVSFDCAGF-----------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g~-----------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                         ....||+||--...           .+.++.+.+.|+|+|.++.-.
T Consensus       223 ---~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs  268 (374)
T PRK01581        223 ---PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS  268 (374)
T ss_pred             ---cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence               35579998876543           235678889999999987654

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.42  E-value=0.0019  Score=50.29  Aligned_cols=78  Identities=21%  Similarity=0.316  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      ++++++|.|+ |++|..+++.+...|++ |++++++.++.+.+ ++.+... +..+-.+.+   .+.+..+. ..++|++
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~-V~~~~r~~~~~~~~~~~~~~~~-~~~D~~~~~---~v~~~~~~-~~~~d~v   81 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGAR-VVAAARNAAALDRLAGETGCEP-LRLDVGDDA---AIRAALAA-AGAFDGL   81 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCeE-EEecCCCHH---HHHHHHHH-hCCCCEE
Confidence            5688999996 89999999999999985 88899988776554 3344432 222222221   23333222 2479999


Q ss_pred             EEcCCC
Q 048013          173 FDCAGF  178 (216)
Q Consensus       173 i~~~g~  178 (216)
                      |.+.|.
T Consensus        82 i~~ag~   87 (245)
T PRK07060         82 VNCAGI   87 (245)
T ss_pred             EECCCC
Confidence            999984

>PRK05884 short chain dehydrogenase; Provisional

Probab=97.41  E-value=0.0068  Score=46.87  Aligned_cols=98  Identities=23%  Similarity=0.274  Sum_probs=61.4

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEE-eCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIV-KVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      +++|.|+ |++|..+++.+...|++ |+.+++++++.+.+ ++++...+. ++ .+.++..+.++++    ...+|++++
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~D~-~~~~~v~~~~~~~----~~~id~lv~   75 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHK-VTLVGARRDDLEVAAKELDVDAIVCDN-TDPASLEEARGLF----PHHLDTIVN   75 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHhccCcEEecCC-CCHHHHHHHHHHH----hhcCcEEEE
Confidence            4789986 89999999999889995 88888988776644 445443321 22 1122222222222    236899998


Q ss_pred             cCCC---------------HH---------------HHHHHHHHhhcCCEEEEeccC
Q 048013          175 CAGF---------------NK---------------TMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       175 ~~g~---------------~~---------------~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      +.|.               .+               ..+..++.|+.+|+++.++..
T Consensus        76 ~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~  132 (223)
T PRK05884         76 VPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPE  132 (223)
T ss_pred             CCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecC
Confidence            8651               01               224445556677999988743

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.41  E-value=0.0011  Score=53.31  Aligned_cols=75  Identities=13%  Similarity=0.132  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCE-EEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADN-IVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .+++++|+|+|+++.+++..+..+|++++.++.|+.++.+.+ ++++... +..+.    .. +.+..    .-..+|+|
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~----~~-~~~~~----~~~~~DiV  194 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLE----GD-SGGLA----IEKAAEVL  194 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceecc----ch-hhhhh----cccCCCEE
Confidence            578999999999999999999999998899999998876544 4443221 11110    00 11111    11368999


Q ss_pred             EEcCCC
Q 048013          173 FDCAGF  178 (216)
Q Consensus       173 i~~~g~  178 (216)
                      |+|++.
T Consensus       195 InaTp~  200 (282)
T TIGR01809       195 VSTVPA  200 (282)
T ss_pred             EECCCC
Confidence            999885

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=97.41  E-value=0.0054  Score=48.33  Aligned_cols=80  Identities=25%  Similarity=0.310  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH---cCCCEE---EeCCCCcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK---LGADNI---VKVSTNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~  167 (216)
                      +++++||.|+ |++|..+++.+...|++ |+++++++...+..++   .+....   .++ .+.++..+.+.++.+. ..
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~~-~~   83 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGAR-VVLVDRSELVHEVAAELRAAGGEALALTADL-ETYAGAQAAMAAAVEA-FG   83 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCchHHHHHHHHHHhcCCeEEEEEEeC-CCHHHHHHHHHHHHHH-cC
Confidence            4688999996 89999999999889995 8888887543333333   333321   122 1222334444444332 24


Q ss_pred             CccEEEEcCC
Q 048013          168 GIDVSFDCAG  177 (216)
Q Consensus       168 ~~d~vi~~~g  177 (216)
                      ++|+++.++|
T Consensus        84 ~id~lv~nAg   93 (260)
T PRK12823         84 RIDVLINNVG   93 (260)
T ss_pred             CCeEEEECCc
Confidence            7999999997

>PRK07856 short chain dehydrogenase; Provisional

Probab=97.40  E-value=0.0052  Score=48.29  Aligned_cols=78  Identities=23%  Similarity=0.207  Sum_probs=49.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCC-EEEeCCC-CcccHHHHHHHHHHHcCCCccE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGAD-NIVKVST-NLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      .++++||+|+ |++|..+++.+...|++ |+.++++.++    +..+.. ..+..+- +.++..+.+.++.+. ...+|+
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~~-v~~~~r~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~id~   78 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGAT-VVVCGRRAPE----TVDGRPAEFHAADVRDPDQVAALVDAIVER-HGRLDV   78 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCChhh----hhcCCceEEEEccCCCHHHHHHHHHHHHHH-cCCCCE
Confidence            4789999996 89999999999889995 8888887654    112221 1222221 222333444444332 246899


Q ss_pred             EEEcCCC
Q 048013          172 SFDCAGF  178 (216)
Q Consensus       172 vi~~~g~  178 (216)
                      +|.++|.
T Consensus        79 vi~~ag~   85 (252)
T PRK07856         79 LVNNAGG   85 (252)
T ss_pred             EEECCCC
Confidence            9999873

>PRK04457 spermidine synthase; Provisional

Probab=97.40  E-value=0.0035  Score=49.88  Aligned_cols=97  Identities=15%  Similarity=0.113  Sum_probs=65.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc-CCC----EEEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL-GAD----NIVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~-g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      .++++||++|+|+ |.++..+++...-..+++++.+++-.+.+++. +..    .+..   ...|..+.+.+    ....
T Consensus        65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v---~~~Da~~~l~~----~~~~  136 (262)
T PRK04457         65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEV---IEADGAEYIAV----HRHS  136 (262)
T ss_pred             CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEE---EECCHHHHHHh----CCCC
Confidence            4567899999875 77777777776433699999999999888763 321    1111   11344444432    3457


Q ss_pred             ccEEEEcC-CC---------HHHHHHHHHHhhcCCEEEEe
Q 048013          169 IDVSFDCA-GF---------NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       169 ~d~vi~~~-g~---------~~~~~~~~~~l~~~G~~v~~  198 (216)
                      +|+|+--. ..         .+.++.+.+.|+|+|++++.
T Consensus       137 yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        137 TDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             CCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            99987422 11         36778999999999999864

>PRK06949 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.0026  Score=50.05  Aligned_cols=83  Identities=19%  Similarity=0.280  Sum_probs=54.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-c---CCC-EEEeCCC-CcccHHHHHHHHHHHcC
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-L---GAD-NIVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~---g~~-~~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      ..+++++|+|+ |++|..+++.+...|++ |++++++.++.+.+.. +   +.. ..+..+- +.++..+.++++.+ ..
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~-Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~   84 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGAK-VVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAET-EA   84 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH-hc
Confidence            35789999996 99999999999999995 8999898877654422 1   221 2222221 22334444444432 23


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      .++|++|.+.|.
T Consensus        85 ~~~d~li~~ag~   96 (258)
T PRK06949         85 GTIDILVNNSGV   96 (258)
T ss_pred             CCCCEEEECCCC
Confidence            579999999983

>PRK05876 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.0065  Score=48.61  Aligned_cols=82  Identities=28%  Similarity=0.331  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH---cCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK---LGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~---~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+ ++   .+... .+..+- +.++..+.+.++.+. ..
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~~-Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~-~g   82 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGAR-VVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL-LG   82 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH-cC
Confidence            5688999986 89999999999999995 88888887665533 22   23322 122221 222333334443332 24


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|++.|.
T Consensus        83 ~id~li~nAg~   93 (275)
T PRK05876         83 HVDVVFSNAGI   93 (275)
T ss_pred             CCCEEEECCCc
Confidence            69999999983

>PRK06198 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.012  Score=46.25  Aligned_cols=83  Identities=22%  Similarity=0.300  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHH----HHHcCCCEE-EeCCCC-cccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSV----AKKLGADNI-VKVSTN-LQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~----~~~~g~~~~-~~~~~~-~~~~~~~~~~~~~~~~~  167 (216)
                      .+++++|.|+ |++|..+++.+...|++.|++++++.++.+.    +++.+.... +..+-. .+.+.+.+..+.+.. +
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g   83 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAF-G   83 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh-C
Confidence            5688999996 8999999999999999658888888665442    223343321 222222 222333333332222 3


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.+.|.
T Consensus        84 ~id~li~~ag~   94 (260)
T PRK06198         84 RLDALVNAAGL   94 (260)
T ss_pred             CCCEEEECCCc
Confidence            69999999984

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.39  E-value=0.01  Score=46.37  Aligned_cols=82  Identities=17%  Similarity=0.232  Sum_probs=49.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChHHHHHH-HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCCCc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIV-DVDDYRLSVA-KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~-~~~~~~~~~~-~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~  169 (216)
                      .++++||+|+ |++|..++..+...|++ |+.. .++.++.+.+ .+++... .+..+- +.++..+.+.++.+..+.++
T Consensus         4 ~~k~ilItGas~gIG~~la~~l~~~G~~-vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~i   82 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAFAREGAR-VVVNYHQSEDAAEALADELGDRAIALQADVTDREQVQAMFATATEHFGKPI   82 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCe-EEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence            3578999996 89999999998889996 6554 4445544433 3344221 222221 22233344444443345559


Q ss_pred             cEEEEcCC
Q 048013          170 DVSFDCAG  177 (216)
Q Consensus       170 d~vi~~~g  177 (216)
                      |++|.+.|
T Consensus        83 d~li~~ag   90 (253)
T PRK08642         83 TTVVNNAL   90 (253)
T ss_pred             eEEEECCC
Confidence            99999876

>PRK09186 flagellin modification protein A; Provisional

Probab=97.39  E-value=0.0084  Score=47.03  Aligned_cols=81  Identities=23%  Similarity=0.365  Sum_probs=51.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc----CCCE--EEeCCC-CcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL----GADN--IVKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~----g~~~--~~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      .+++++|.|+ |++|..++..+...|++ |+.++++.++.+.+ +++    +...  .+..+- +.+...+.+.++.+..
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~   81 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGI-VIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY   81 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence            4688999996 89999999999999995 88888887765433 222    2221  111111 2223334444443322


Q ss_pred             CCCccEEEEcCC
Q 048013          166 GTGIDVSFDCAG  177 (216)
Q Consensus       166 ~~~~d~vi~~~g  177 (216)
                       .++|++|.+.+
T Consensus        82 -~~id~vi~~A~   92 (256)
T PRK09186         82 -GKIDGAVNCAY   92 (256)
T ss_pred             -CCccEEEECCc
Confidence             46999999985

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.37  E-value=0.0032  Score=50.87  Aligned_cols=82  Identities=23%  Similarity=0.352  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----HcCCCE-EEeCCCC-cccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KLGADN-IVKVSTN-LQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~g~~~-~~~~~~~-~~~~~~~~~~~~~~~~~  167 (216)
                      .+++++|+|+ |++|..+++.+...|++ |++++++.++.+.+.    +.+... .+..+-. .++..+.+.++.+.. .
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~-Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~-g  116 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGAT-VVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRI-G  116 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc-C
Confidence            3578999996 99999999998888985 899999887755442    223321 2222222 223333344433222 4


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.++|.
T Consensus       117 ~id~li~~AG~  127 (293)
T PRK05866        117 GVDILINNAGR  127 (293)
T ss_pred             CCCEEEECCCC
Confidence            79999999874

>PRK06128 oxidoreductase; Provisional

Probab=97.36  E-value=0.011  Score=47.94  Aligned_cols=106  Identities=20%  Similarity=0.232  Sum_probs=63.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChH--H----HHHHHHcCCCEE-EeCCC-CcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDY--R----LSVAKKLGADNI-VKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~--~----~~~~~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++.++.+  .    .+.++..+.... +..+- +.+...+.+.++.+..
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~~-V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  132 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGAD-IALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKEL  132 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCCE-EEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence            5689999996 89999999999989995 666654322  1    122333443322 21221 2223334444443333


Q ss_pred             CCCccEEEEcCCCH--------------------------HHHHHHHHHhhcCCEEEEeccCC
Q 048013          166 GTGIDVSFDCAGFN--------------------------KTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       166 ~~~~d~vi~~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                       .++|++|.++|..                          ..++.+++.|..+|+++.++...
T Consensus       133 -g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~  194 (300)
T PRK06128        133 -GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQ  194 (300)
T ss_pred             -CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCcc
Confidence             4699999998841                          02345555666788999887543

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.35  E-value=0.0054  Score=46.98  Aligned_cols=92  Identities=16%  Similarity=0.167  Sum_probs=61.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChH-HHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDY-RLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      .+++|||+|+|.+|..-++.+...|++ |++++.+.. .++.+.+.+--..+.     .++..  ..+     .++|+||
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~-VtVvsp~~~~~l~~l~~~~~i~~~~-----~~~~~--~dl-----~~~~lVi   74 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGAQ-LRVIAEELESELTLLAEQGGITWLA-----RCFDA--DIL-----EGAFLVI   74 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCE-EEEEcCCCCHHHHHHHHcCCEEEEe-----CCCCH--HHh-----CCcEEEE
Confidence            468999999999999999999999996 777765432 233333333111111     11111  111     3699999


Q ss_pred             EcCCCHHHHHHHHHHhhcCCEEEEec
Q 048013          174 DCAGFNKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       174 ~~~g~~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      -+++.++.-......++..|.++.+-
T Consensus        75 ~at~d~~ln~~i~~~a~~~~ilvn~~  100 (205)
T TIGR01470        75 AATDDEELNRRVAHAARARGVPVNVV  100 (205)
T ss_pred             ECCCCHHHHHHHHHHHHHcCCEEEEC
Confidence            99999767677777888888777554

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK07774 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.0027  Score=49.68  Aligned_cols=82  Identities=22%  Similarity=0.305  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc---CCC-EEEeCCCCc-ccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL---GAD-NIVKVSTNL-QDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~---g~~-~~~~~~~~~-~~~~~~~~~~~~~~~~  167 (216)
                      .+++++|+|+ |.+|..+++.+...|++ |+.+++++++.+.+ +++   +.. ..+..+-.+ +...+.+.++.+.. .
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~-vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-~   82 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGAS-VVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAF-G   82 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh-C
Confidence            5678999996 99999999999889985 88898887654433 222   222 122222222 22333333443333 3


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.++|.
T Consensus        83 ~id~vi~~ag~   93 (250)
T PRK07774         83 GIDYLVNNAAI   93 (250)
T ss_pred             CCCEEEECCCC
Confidence            69999999983

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.34  E-value=0.0082  Score=47.06  Aligned_cols=82  Identities=26%  Similarity=0.354  Sum_probs=51.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH---cCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK---LGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~---~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .+++++|+|+ |.+|..+++.+...|++ |++++++.++.+.+ .+   .+... .+..+- +.++..+.+.++.+. ..
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~   80 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGAK-VVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVET-FG   80 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH-cC
Confidence            4578999996 99999999988888995 88888887765443 22   23322 222222 222233333333322 34


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.+++.
T Consensus        81 ~~d~vi~~a~~   91 (258)
T PRK12429         81 GVDILVNNAGI   91 (258)
T ss_pred             CCCEEEECCCC
Confidence            79999998873

>PRK12747 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.01  Score=46.55  Aligned_cols=108  Identities=17%  Similarity=0.201  Sum_probs=62.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChHHHHH-HH---HcCCCE-EEeCCC-CcccHHHHHHHHHH---
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVD-VDDYRLSV-AK---KLGADN-IVKVST-NLQDIAEEVEKIQK---  163 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~-~~~~~~~~-~~---~~g~~~-~~~~~~-~~~~~~~~~~~~~~---  163 (216)
                      .+++++|+|+ |++|.++++.+...|++ |++.. ++.++.+. ..   ..+... .+..+- +.++....+.++.+   
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGAL-VAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ   81 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCe-EEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhh
Confidence            4688999996 89999999999999996 66653 44444332 22   223221 111111 11222333333322   


Q ss_pred             -HcC-CCccEEEEcCCCH----------H---------------HHHHHHHHhhcCCEEEEeccCCC
Q 048013          164 -AMG-TGIDVSFDCAGFN----------K---------------TMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       164 -~~~-~~~d~vi~~~g~~----------~---------------~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                       ..+ .++|+++.++|..          +               .++.+++.+...|+++.++....
T Consensus        82 ~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~  148 (252)
T PRK12747         82 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAAT  148 (252)
T ss_pred             hhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccc
Confidence             112 3799999998831          0               22456666777799999886544

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=97.33  E-value=0.0037  Score=49.43  Aligned_cols=82  Identities=22%  Similarity=0.289  Sum_probs=54.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-HcCCC-EEEeCC-CCcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KLGAD-NIVKVS-TNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~g~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      +++++||+|+ +++|..+++.+...|++ |+.+++++++.+.+. +++.. ..+..+ .+.++..+.+.++.+.. ..+|
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g~id   82 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGAR-VAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAF-GKLD   82 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhc-CCCC
Confidence            5689999996 89999999999999995 888999887766553 34332 122211 12233344444444332 4699


Q ss_pred             EEEEcCCC
Q 048013          171 VSFDCAGF  178 (216)
Q Consensus       171 ~vi~~~g~  178 (216)
                      ++|+++|.
T Consensus        83 ~li~~ag~   90 (263)
T PRK06200         83 CFVGNAGI   90 (263)
T ss_pred             EEEECCCC
Confidence            99999883

>PRK08263 short chain dehydrogenase; Provisional

Probab=97.31  E-value=0.011  Score=47.22  Aligned_cols=81  Identities=20%  Similarity=0.222  Sum_probs=51.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-cCCCE-EEeCCC-CcccHHHHHHHHHHHcCCCccE
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-LGADN-IVKVST-NLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      +++++|+|+ |++|..+++.+...|++ |+.++++.++.+.+.+ ++... .+..+- +.++..+.+.++.+.. .++|+
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~d~   80 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGDR-VVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHF-GRLDI   80 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHc-CCCCE
Confidence            468999996 99999999988888985 8888898877655433 33221 222211 2223333344433222 47899


Q ss_pred             EEEcCCC
Q 048013          172 SFDCAGF  178 (216)
Q Consensus       172 vi~~~g~  178 (216)
                      +|.++|.
T Consensus        81 vi~~ag~   87 (275)
T PRK08263         81 VVNNAGY   87 (275)
T ss_pred             EEECCCC
Confidence            9999884

>PRK07904 short chain dehydrogenase; Provisional

Probab=97.30  E-value=0.0091  Score=47.11  Aligned_cols=83  Identities=20%  Similarity=0.366  Sum_probs=50.9

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcC-CCeEEEEcCChHH-HHH----HHHcCCCE--EEeCCC-CcccHHHHHHHHH
Q 048013           93 IGPETNVLIMGS-GPIGLVTMLAARAFG-APRIVIVDVDDYR-LSV----AKKLGADN--IVKVST-NLQDIAEEVEKIQ  162 (216)
Q Consensus        93 ~~~~~~vlv~Ga-g~~G~~~i~~a~~~g-~~~vv~~~~~~~~-~~~----~~~~g~~~--~~~~~~-~~~~~~~~~~~~~  162 (216)
                      +..+++++|.|+ |++|..+++.+...| + +|+++++++++ .+.    +++.+...  .+..+- +.++..+.++++.
T Consensus         5 ~~~~~~vlItGas~giG~~la~~l~~~gg~-~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~   83 (253)
T PRK07904          5 VGNPQTILLLGGTSEIGLAICERYLKNAPA-RVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAF   83 (253)
T ss_pred             cCCCcEEEEEcCCcHHHHHHHHHHHhcCCC-eEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHH
Confidence            456789999996 899999998776664 7 48888887664 332    23333312  222222 2223334445443


Q ss_pred             HHcCCCccEEEEcCCC
Q 048013          163 KAMGTGIDVSFDCAGF  178 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~  178 (216)
                      +  .+++|+++.++|.
T Consensus        84 ~--~g~id~li~~ag~   97 (253)
T PRK07904         84 A--GGDVDVAIVAFGL   97 (253)
T ss_pred             h--cCCCCEEEEeeec
Confidence            2  2479999988765

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=97.30  E-value=0.013  Score=46.39  Aligned_cols=106  Identities=16%  Similarity=0.197  Sum_probs=63.3

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCC------hHHHHHHHHcCC-CEEEeCCC-CcccHHHHHHHHHH
Q 048013           95 PETNVLIMGS---GPIGLVTMLAARAFGAPRIVIVDVD------DYRLSVAKKLGA-DNIVKVST-NLQDIAEEVEKIQK  163 (216)
Q Consensus        95 ~~~~vlv~Ga---g~~G~~~i~~a~~~g~~~vv~~~~~------~~~~~~~~~~g~-~~~~~~~~-~~~~~~~~~~~~~~  163 (216)
                      .+++++|.|+   +++|.++++.+...|++ |+.+.++      ++..+.+.+.+. ...+..|- +.++..+.+.++.+
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~   83 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGAE-LGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQ   83 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHH
Confidence            4688999995   48999999999889996 6666432      222333322221 11222221 22333444444443


Q ss_pred             HcCCCccEEEEcCCCH-------H----------------------HHHHHHHHhhcCCEEEEeccCC
Q 048013          164 AMGTGIDVSFDCAGFN-------K----------------------TMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~~-------~----------------------~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      .. +++|++++++|..       .                      ..+.+++.|+.+|+++.++...
T Consensus        84 ~~-g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~  150 (258)
T PRK07370         84 KW-GKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLG  150 (258)
T ss_pred             Hc-CCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccc
Confidence            33 4799999998731       0                      2355677777789998887543

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=97.29  E-value=0.022  Score=44.74  Aligned_cols=82  Identities=17%  Similarity=0.270  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCC-CCcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVS-TNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~~  167 (216)
                      ++++++|.|+ |++|..+++.+...|++ |+.++++.++.+.+    ++.+... .+..+ .+.++..+.++++.... +
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-~   87 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGAH-VLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEH-G   87 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCe-EEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc-C
Confidence            5789999996 89999999988889995 89999987665433    2334321 22222 22233344444443222 4


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|.+|.++|.
T Consensus        88 ~id~vi~~ag~   98 (256)
T PRK06124         88 RLDILVNNVGA   98 (256)
T ss_pred             CCCEEEECCCC
Confidence            68999999884

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.29  E-value=0.0089  Score=47.03  Aligned_cols=82  Identities=20%  Similarity=0.327  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEE-EeCCCCc-ccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNI-VKVSTNL-QDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~-~~~~~~~-~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |.+|..+++.+...|++ |+++++++++.+.+    ++.+.... +..+-.+ ....+.+.++.+. -.
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~   83 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGAA-VAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAER-FG   83 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHH-cC
Confidence            4689999996 99999999999999995 88888888655432    23343322 2222112 2233333333222 24


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.++|.
T Consensus        84 ~~d~vi~~ag~   94 (262)
T PRK13394         84 SVDILVSNAGI   94 (262)
T ss_pred             CCCEEEECCcc
Confidence            68999999874

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.29  E-value=0.0039  Score=50.06  Aligned_cols=102  Identities=17%  Similarity=0.168  Sum_probs=63.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc-CCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEc
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL-GADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC  175 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  175 (216)
                      ++|||+|.|. |..+-.+++.....++++++.+++-.+.++++ +....-..+.+.+-..+...++.+....++|+||--
T Consensus        78 k~VLiiGgGd-G~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D  156 (282)
T COG0421          78 KRVLIIGGGD-GGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD  156 (282)
T ss_pred             CeEEEECCCc-cHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence            6999997653 44555677777777899999999999988773 322211111111111111222222234489997653


Q ss_pred             CC-C---------HHHHHHHHHHhhcCCEEEEec
Q 048013          176 AG-F---------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       176 ~g-~---------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      +. .         .+..+.+-++|+++|.++.-.
T Consensus       157 ~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~  190 (282)
T COG0421         157 STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA  190 (282)
T ss_pred             CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence            33 2         356789999999999998773

>PRK08628 short chain dehydrogenase; Provisional

Probab=97.29  E-value=0.0032  Score=49.62  Aligned_cols=82  Identities=23%  Similarity=0.230  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH---cCCCE-EEeCCC-CcccHHHHHHHHHHHcCCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK---LGADN-IVKVST-NLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~---~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~  168 (216)
                      +++++||+|+ |++|..+++.+...|++ ++++++++++.+..++   .+... .+..+- +.++..+.+.++.+.. .+
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~   83 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKF-GR   83 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc-CC
Confidence            4678999996 89999999998889996 7888888776544333   23321 222221 1222333344443322 47


Q ss_pred             ccEEEEcCCC
Q 048013          169 IDVSFDCAGF  178 (216)
Q Consensus       169 ~d~vi~~~g~  178 (216)
                      +|++|.++|.
T Consensus        84 id~vi~~ag~   93 (258)
T PRK08628         84 IDGLVNNAGV   93 (258)
T ss_pred             CCEEEECCcc
Confidence            9999999983

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.29  E-value=0.0031  Score=53.00  Aligned_cols=93  Identities=22%  Similarity=0.312  Sum_probs=55.6

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChHHHHHHHH--cCCC-EEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAP-RIVIVDVDDYRLSVAKK--LGAD-NIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~-~vv~~~~~~~~~~~~~~--~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      |+|+|+|.+|..+++.+....-. .+++.+++.++.+.+.+  .+.. .....+-  .+..+ +.++.    ++.|+||+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~-l~~~~----~~~dvVin   73 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDV--NDPES-LAELL----RGCDVVIN   73 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--T--TTHHH-HHHHH----TTSSEEEE
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEec--CCHHH-HHHHH----hcCCEEEE
Confidence            68889999999999999877643 69999999999776543  2222 1222221  22222 44442    35799999


Q ss_pred             cCCCHHHHHHHHHHhhcCCEEEEe
Q 048013          175 CAGFNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       175 ~~g~~~~~~~~~~~l~~~G~~v~~  198 (216)
                      |+|.......+-.+++.+-.++..
T Consensus        74 ~~gp~~~~~v~~~~i~~g~~yvD~   97 (386)
T PF03435_consen   74 CAGPFFGEPVARACIEAGVHYVDT   97 (386)
T ss_dssp             -SSGGGHHHHHHHHHHHT-EEEES
T ss_pred             CCccchhHHHHHHHHHhCCCeecc
Confidence            999853333344445556677763

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK12743 oxidoreductase; Provisional

Probab=97.28  E-value=0.014  Score=45.96  Aligned_cols=81  Identities=22%  Similarity=0.273  Sum_probs=49.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChHHHHH----HHHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIV-DVDDYRLSV----AKKLGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~-~~~~~~~~~----~~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      ++++||.|+ |++|..+++.+...|++ |+.+ .++.++.+.    ++..+... .+..+- +.++..+.+.++.+.. .
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-~   79 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFD-IGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRL-G   79 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc-C
Confidence            468999996 89999999999999996 6655 445444332    23345432 222221 2223333444443333 3


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.+.|.
T Consensus        80 ~id~li~~ag~   90 (256)
T PRK12743         80 RIDVLVNNAGA   90 (256)
T ss_pred             CCCEEEECCCC
Confidence            69999999874

>PLN02823 spermine synthase

Probab=97.28  E-value=0.0041  Score=51.26  Aligned_cols=101  Identities=18%  Similarity=0.201  Sum_probs=62.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCC-CE-EEe---CCCCcccHHHHHHHHHHHcCCC
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGA-DN-IVK---VSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~-~~-~~~---~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      ...++|||+|+|. |..+..+++..+..++++++.+++-.+.++++-. .. .+.   +.-...|..+.++    .....
T Consensus       102 ~~pk~VLiiGgG~-G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~----~~~~~  176 (336)
T PLN02823        102 PNPKTVFIMGGGE-GSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE----KRDEK  176 (336)
T ss_pred             CCCCEEEEECCCc-hHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh----hCCCC
Confidence            3567899998764 5555667776666679999999999998877422 10 000   0001123333332    24567


Q ss_pred             ccEEEEcCCC------------HHHHH-HHHHHhhcCCEEEEec
Q 048013          169 IDVSFDCAGF------------NKTMS-TALSATRAGGKVCLVG  199 (216)
Q Consensus       169 ~d~vi~~~g~------------~~~~~-~~~~~l~~~G~~v~~g  199 (216)
                      +|+||--...            .+.++ .+.+.|+|+|.++.-.
T Consensus       177 yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        177 FDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             ccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence            9997764322            23455 6788999999987543

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.28  E-value=0.0059  Score=44.94  Aligned_cols=44  Identities=16%  Similarity=0.225  Sum_probs=36.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCC
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGA  141 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~  141 (216)
                      .+|.++|.|.+|..+++-+...|++ |.+.+++.++.+.+.+.++
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~~~~~~~~~~g~   45 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSPEKAEALAEAGA   45 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSHHHHHHHHHTTE
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccchhhhhhhHHhhh
Confidence            3688999999999999999999995 9999999999888876663

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK12937 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.017  Score=44.99  Aligned_cols=106  Identities=15%  Similarity=0.198  Sum_probs=62.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC-hHHHH----HHHHcCCCE-EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVD-DYRLS----VAKKLGADN-IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~-~~~~~----~~~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      ++++++|+|+ |++|..+++.+...|++ ++.+.++ ++..+    .++..+... .+..+- +.++..+.++++.+.. 
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-   81 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGFA-VAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAF-   81 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc-
Confidence            5688999986 99999999999999996 5555443 32222    222333322 122221 2223334444443322 


Q ss_pred             CCccEEEEcCCCH----------H---------------HHHHHHHHhhcCCEEEEeccCC
Q 048013          167 TGIDVSFDCAGFN----------K---------------TMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       167 ~~~d~vi~~~g~~----------~---------------~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +++|++|.++|..          +               .++.+++.++.+|+++.++...
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~  142 (245)
T PRK12937         82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSV  142 (245)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeecc
Confidence            4799999998841          0               1344555666778999887533

>PLN02366 spermidine synthase

Probab=97.27  E-value=0.0029  Score=51.49  Aligned_cols=101  Identities=27%  Similarity=0.314  Sum_probs=64.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc-CC------CEEEeCCCCcccHHHHHHHHHHHc
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL-GA------DNIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      ..+.++||++|+|. |..+..+++..+..+|++++.+++-.+.++++ ..      +.-+.+  ...|..+.+++   ..
T Consensus        89 ~~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~v--i~~Da~~~l~~---~~  162 (308)
T PLN02366         89 IPNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNL--HIGDGVEFLKN---AP  162 (308)
T ss_pred             CCCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEE--EEChHHHHHhh---cc
Confidence            45678999999765 55666777766666799999999888877663 21      100110  11233333332   12


Q ss_pred             CCCccEEEEcCCC----------HHHHHHHHHHhhcCCEEEEec
Q 048013          166 GTGIDVSFDCAGF----------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       166 ~~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ++.+|+||.-...          .+.++.+.+.|+|+|.++.-+
T Consensus       163 ~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        163 EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            4579998875433          245788899999999997654

>PRK06484 short chain dehydrogenase; Validated

Probab=97.27  E-value=0.013  Score=51.20  Aligned_cols=82  Identities=26%  Similarity=0.388  Sum_probs=54.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCE-EEeCC-CCcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADN-IVKVS-TNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .++++||+|+ +++|..+++.+...|++ |+.++++.++.+.+ ++++... .+..+ .+.++..+.+.++.+.. .++|
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g~iD   81 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGDQ-VVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREF-GRID   81 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHh-CCCC
Confidence            5788999996 89999999999999995 88888888776544 4555432 12222 12233444444443333 4799


Q ss_pred             EEEEcCCC
Q 048013          171 VSFDCAGF  178 (216)
Q Consensus       171 ~vi~~~g~  178 (216)
                      ++|++.|.
T Consensus        82 ~li~nag~   89 (520)
T PRK06484         82 VLVNNAGV   89 (520)
T ss_pred             EEEECCCc
Confidence            99999874

>PRK07831 short chain dehydrogenase; Provisional

Probab=97.27  E-value=0.0046  Score=48.88  Aligned_cols=84  Identities=25%  Similarity=0.328  Sum_probs=53.6

Q ss_pred             CCCCCEEEEEcC-C-HHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-----cCCCEE--EeCCC-CcccHHHHHHHHH
Q 048013           93 IGPETNVLIMGS-G-PIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-----LGADNI--VKVST-NLQDIAEEVEKIQ  162 (216)
Q Consensus        93 ~~~~~~vlv~Ga-g-~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-----~g~~~~--~~~~~-~~~~~~~~~~~~~  162 (216)
                      +..+++++|+|+ | ++|.++++.+...|++ |+++++++++.+...+     ++...+  +..+- +.++..+.+.++.
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   92 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAV   92 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            345789999986 6 7999999999999995 8888888776554322     343322  22221 1223333344433


Q ss_pred             HHcCCCccEEEEcCCC
Q 048013          163 KAMGTGIDVSFDCAGF  178 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~  178 (216)
                      +. .+++|++|.+.|.
T Consensus        93 ~~-~g~id~li~~ag~  107 (262)
T PRK07831         93 ER-LGRLDVLVNNAGL  107 (262)
T ss_pred             HH-cCCCCEEEECCCC
Confidence            22 2479999999984

>PRK07985 oxidoreductase; Provisional

Probab=97.27  E-value=0.013  Score=47.37  Aligned_cols=106  Identities=17%  Similarity=0.145  Sum_probs=63.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh--HHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDD--YRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~--~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      .++++||+|+ |++|..+++.+...|++ |+.+.++.  ++.+.+    ++.+... .+..+- +.++..+.+.++.+. 
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~~-Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-  125 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGAD-VAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA-  125 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH-
Confidence            5678999996 89999999999999995 77765432  233222    2334322 122221 222333344444332 


Q ss_pred             CCCccEEEEcCCCH--------------------------HHHHHHHHHhhcCCEEEEeccCC
Q 048013          166 GTGIDVSFDCAGFN--------------------------KTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       166 ~~~~d~vi~~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      .+++|+++.+.|..                          ..++.+++.|+.+|+++.++...
T Consensus       126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~  188 (294)
T PRK07985        126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQ  188 (294)
T ss_pred             hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCch
Confidence            34799999988731                          12345556666788999887543

>PRK06701 short chain dehydrogenase; Provisional

Probab=97.26  E-value=0.018  Score=46.41  Aligned_cols=107  Identities=21%  Similarity=0.240  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHH-HH----HHHHcCCCE-EEeCCC-CcccHHHHHHHHHHHc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYR-LS----VAKKLGADN-IVKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~-~~----~~~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      -.++++||+|+ |++|..+++.+...|++ |+.++++.+. .+    .++..+... .+..+- +.+...+.+.++.+..
T Consensus        44 ~~~k~iLItGasggIG~~la~~l~~~G~~-V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~  122 (290)
T PRK06701         44 LKGKVALITGGDSGIGRAVAVLFAKEGAD-IAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVREL  122 (290)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35789999996 89999999988889995 7777766422 22    222233322 222221 1223333344443322


Q ss_pred             CCCccEEEEcCCCH--------------------------HHHHHHHHHhhcCCEEEEeccCC
Q 048013          166 GTGIDVSFDCAGFN--------------------------KTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       166 ~~~~d~vi~~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                       .++|++|.++|..                          ...+.+++.++++|+++.++...
T Consensus       123 -~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~  184 (290)
T PRK06701        123 -GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSIT  184 (290)
T ss_pred             -CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEeccc
Confidence             4689999988741                          02244455566778999887544

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=97.26  E-value=0.015  Score=45.79  Aligned_cols=81  Identities=11%  Similarity=0.198  Sum_probs=50.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH----cCCCE--EEeCCCC-cccHHHHHHHHHHHcC
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK----LGADN--IVKVSTN-LQDIAEEVEKIQKAMG  166 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~----~g~~~--~~~~~~~-~~~~~~~~~~~~~~~~  166 (216)
                      ++++||.|+ |++|..+++.+...|++ ++.++++.++.+.. ++    .+...  .+..+-. .++....+.++.+.. 
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~-vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~-   79 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYR-VAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIF-   79 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHc-
Confidence            468999986 89999999999889995 88888887655433 22    22111  2222222 222333344443222 


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      .++|+++.+.|.
T Consensus        80 ~~id~vv~~ag~   91 (259)
T PRK12384         80 GRVDLLVYNAGI   91 (259)
T ss_pred             CCCCEEEECCCc
Confidence            479999999873

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=97.25  E-value=0.017  Score=45.37  Aligned_cols=82  Identities=26%  Similarity=0.351  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-HcCCCE-EEeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KLGADN-IVKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .+++++|+|+ |++|..+++.+...|++ |+.++++.++.+.+. +++... .+..+- +.++..+.+.++.+.. .++|
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id   82 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGAR-VVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERF-GGID   82 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHc-CCCC
Confidence            4678999996 99999999999999995 889999887765543 343221 122221 2223333444443322 4699


Q ss_pred             EEEEcCCC
Q 048013          171 VSFDCAGF  178 (216)
Q Consensus       171 ~vi~~~g~  178 (216)
                      +++.+.+.
T Consensus        83 ~li~~ag~   90 (257)
T PRK07067         83 ILFNNAAL   90 (257)
T ss_pred             EEEECCCc
Confidence            99998873

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.24  E-value=0.02  Score=44.43  Aligned_cols=82  Identities=22%  Similarity=0.282  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEEE-eCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNIV-KVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~~-~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      +++++||+|+ |.+|..+++.+...|.+ |+.+++++++.+..    ++.+....+ ..+- +.+...+.+.++... -.
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~   81 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEA-FG   81 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH-hC
Confidence            3578999996 99999999999889996 89998987765433    233433222 1111 122233334443322 24


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|.++.++|.
T Consensus        82 ~id~vi~~ag~   92 (246)
T PRK05653         82 ALDILVNNAGI   92 (246)
T ss_pred             CCCEEEECCCc
Confidence            68999999864

>PRK06196 oxidoreductase; Provisional

Probab=97.24  E-value=0.0047  Score=50.36  Aligned_cols=82  Identities=20%  Similarity=0.289  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEEeCCC-CcccHHHHHHHHHHHcCCCccE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      .+++++|+|+ |++|..+++.+...|++ |++++++.++.+.+ +++..-..+..+- +.++..+.+.++.+ ...++|+
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~~-Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~-~~~~iD~  102 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGAH-VIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLD-SGRRIDI  102 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHh-cCCCCCE
Confidence            4689999996 89999999988889995 88888887765543 3332112222221 22233333444332 2357999


Q ss_pred             EEEcCCC
Q 048013          172 SFDCAGF  178 (216)
Q Consensus       172 vi~~~g~  178 (216)
                      +|.++|.
T Consensus       103 li~nAg~  109 (315)
T PRK06196        103 LINNAGV  109 (315)
T ss_pred             EEECCCC
Confidence            9999873

>PRK06841 short chain dehydrogenase; Provisional

Probab=97.24  E-value=0.0051  Score=48.30  Aligned_cols=82  Identities=22%  Similarity=0.235  Sum_probs=53.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCE--EEeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADN--IVKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      +++++||+|+ |++|..+++.+...|++ |+.++++.+..+...++....  .+..+- +.++..+.+.++.+. ..++|
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~~~d   91 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGAR-VALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISA-FGRID   91 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHH-hCCCC
Confidence            4689999996 89999999999889995 888888877655554443222  222222 222333334443322 24799


Q ss_pred             EEEEcCCC
Q 048013          171 VSFDCAGF  178 (216)
Q Consensus       171 ~vi~~~g~  178 (216)
                      ++|.++|.
T Consensus        92 ~vi~~ag~   99 (255)
T PRK06841         92 ILVNSAGV   99 (255)
T ss_pred             EEEECCCC
Confidence            99999984

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.23  E-value=0.016  Score=45.66  Aligned_cols=82  Identities=20%  Similarity=0.204  Sum_probs=50.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHH---HHHHcCCC-EEEeCCCC-cccHHHHHHHHHHHcCCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLS---VAKKLGAD-NIVKVSTN-LQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~---~~~~~g~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~  168 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++++..+   ...+.+.. ..+..+-. .++..+.+.++.+. ..+
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~-~g~   91 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEE-FGK   91 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH-cCC
Confidence            5789999996 89999999999999995 777777632112   22233432 12222222 22333344444332 346


Q ss_pred             ccEEEEcCCC
Q 048013          169 IDVSFDCAGF  178 (216)
Q Consensus       169 ~d~vi~~~g~  178 (216)
                      +|++|.+.|.
T Consensus        92 id~li~~ag~  101 (258)
T PRK06935         92 IDILVNNAGT  101 (258)
T ss_pred             CCEEEECCCC
Confidence            9999999874

>PRK05867 short chain dehydrogenase; Provisional

Probab=97.23  E-value=0.005  Score=48.41  Aligned_cols=82  Identities=23%  Similarity=0.279  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-H---cCCCE-EEeCC-CCcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-K---LGADN-IVKVS-TNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~---~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|..+++.+...|++ |+.++++.++.+.+. +   .+... .+..+ .+.++..+.+.++.+.. .
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g   85 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGAQ-VAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAEL-G   85 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh-C
Confidence            4789999996 89999999999999995 888888877655432 2   23221 12222 12233344444443333 3


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|+++.+.|.
T Consensus        86 ~id~lv~~ag~   96 (253)
T PRK05867         86 GIDIAVCNAGI   96 (253)
T ss_pred             CCCEEEECCCC
Confidence            79999999874

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.22  E-value=0.019  Score=44.81  Aligned_cols=82  Identities=22%  Similarity=0.251  Sum_probs=49.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEE-EcCChHHHHHH----HHcCCCE-EEeCCCC-cccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVI-VDVDDYRLSVA----KKLGADN-IVKVSTN-LQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~-~~~~~~~~~~~----~~~g~~~-~~~~~~~-~~~~~~~~~~~~~~~~  166 (216)
                      ++++++|.|+ |++|..++..+...|++ |++ ..++.++.+.+    +..+... .+..+-. .++..+.++++.+.. 
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~-v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-   80 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYD-IAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEF-   80 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            4678999996 89999999999999986 544 46666554332    2334332 2222222 223333344443222 


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      .++|++|.++|.
T Consensus        81 ~~id~vi~~ag~   92 (250)
T PRK08063         81 GRLDVFVNNAAS   92 (250)
T ss_pred             CCCCEEEECCCC
Confidence            468999999874

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=97.21  E-value=0.0072  Score=47.21  Aligned_cols=82  Identities=18%  Similarity=0.196  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChH--HHHHHHHcCCC-EEEeCCC-CcccHHHHHHHHHHHcCCCc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDY--RLSVAKKLGAD-NIVKVST-NLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~--~~~~~~~~g~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~  169 (216)
                      .++++||+|+ |++|..+++.+...|++ |+.+++++.  ..+.+++.+.. ..+..+- +.++..+.++++.+. ..++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~-vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~~   81 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGAD-IVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEE-FGHI   81 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH-cCCC
Confidence            5789999996 89999999999999995 888887652  12333444432 2222222 222333344444322 2469


Q ss_pred             cEEEEcCCC
Q 048013          170 DVSFDCAGF  178 (216)
Q Consensus       170 d~vi~~~g~  178 (216)
                      |++|.++|.
T Consensus        82 d~li~~ag~   90 (248)
T TIGR01832        82 DILVNNAGI   90 (248)
T ss_pred             CEEEECCCC
Confidence            999999874

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=97.21  E-value=0.0041  Score=46.66  Aligned_cols=94  Identities=20%  Similarity=0.256  Sum_probs=59.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      +++++|-+|+|. |..++.+++.....+|+++|.+++..+.+    ++.+...+..+.   .+..+    +.  ....+|
T Consensus        42 ~~~~vLDiGcGt-G~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~---~d~~~----~~--~~~~fD  111 (181)
T TIGR00138        42 DGKKVIDIGSGA-GFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVN---GRAED----FQ--HEEQFD  111 (181)
T ss_pred             CCCeEEEecCCC-CccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEe---cchhh----cc--ccCCcc
Confidence            478999999864 66666666654333699999998766554    345554332221   12221    11  235799


Q ss_pred             EEEEcCC-C-HHHHHHHHHHhhcCCEEEEe
Q 048013          171 VSFDCAG-F-NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       171 ~vi~~~g-~-~~~~~~~~~~l~~~G~~v~~  198 (216)
                      +|+...- . ++.++.+.+.|+|+|+++..
T Consensus       112 ~I~s~~~~~~~~~~~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138       112 VITSRALASLNVLLELTLNLLKVGGYFLAY  141 (181)
T ss_pred             EEEehhhhCHHHHHHHHHHhcCCCCEEEEE
Confidence            9887542 1 34567788899999998866

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR00417 speE spermidine synthase

Probab=97.20  E-value=0.0041  Score=49.73  Aligned_cols=100  Identities=17%  Similarity=0.158  Sum_probs=61.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcC-CC------EEEeCCCCcccHHHHHHHHHHHc
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLG-AD------NIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g-~~------~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      .+.+++||++|+|. |..+..+++......+++++.+++-.+.++++- ..      ..+.+  ...+..+.+++    .
T Consensus        70 ~~~p~~VL~iG~G~-G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i--~~~D~~~~l~~----~  142 (270)
T TIGR00417        70 HPNPKHVLVIGGGD-GGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDL--QIDDGFKFLAD----T  142 (270)
T ss_pred             CCCCCEEEEEcCCc-hHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEE--EECchHHHHHh----C
Confidence            34556999999765 445556666554557999999988777776531 10      00110  11233333322    3


Q ss_pred             CCCccEEEEcCC----------CHHHHHHHHHHhhcCCEEEEec
Q 048013          166 GTGIDVSFDCAG----------FNKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       166 ~~~~d~vi~~~g----------~~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ...+|+||....          ..+.++.+.+.|+|+|.++...
T Consensus       143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~  186 (270)
T TIGR00417       143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS  186 (270)
T ss_pred             CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence            467999876433          1245678889999999999764

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK07677 short chain dehydrogenase; Provisional

Probab=97.20  E-value=0.0048  Score=48.48  Aligned_cols=81  Identities=26%  Similarity=0.316  Sum_probs=52.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----HcCCCE-EEeCCC-CcccHHHHHHHHHHHcCCC
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KLGADN-IVKVST-NLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~  168 (216)
                      +++++|.|+ |++|..+++.+...|+ +|++++++.++.+.+.    +.+... .+..+- +.+++.+.+.++.+.. .+
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~   78 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKF-GR   78 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh-CC
Confidence            468999986 8999999999999999 5888888877654432    223221 222221 2233444444443333 36


Q ss_pred             ccEEEEcCCC
Q 048013          169 IDVSFDCAGF  178 (216)
Q Consensus       169 ~d~vi~~~g~  178 (216)
                      +|++|+++|.
T Consensus        79 id~lI~~ag~   88 (252)
T PRK07677         79 IDALINNAAG   88 (252)
T ss_pred             ccEEEECCCC
Confidence            8999999873

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.20  E-value=0.0071  Score=47.24  Aligned_cols=81  Identities=17%  Similarity=0.261  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      ++++++|+|+ |++|..+++.+...|++ |+.++++.++.+.+    ++.+... .+..+- +.++..+.++.+.+. ..
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~-vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~   81 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGAK-LALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAED-FG   81 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH-cC
Confidence            4788999996 99999999999999984 88899887665433    2234332 222221 122333334443322 24


Q ss_pred             CccEEEEcCC
Q 048013          168 GIDVSFDCAG  177 (216)
Q Consensus       168 ~~d~vi~~~g  177 (216)
                      ++|++|.++|
T Consensus        82 ~id~vi~~ag   91 (253)
T PRK08217         82 QLNGLINNAG   91 (253)
T ss_pred             CCCEEEECCC
Confidence            7899999987

>PRK06953 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.0041  Score=47.90  Aligned_cols=77  Identities=26%  Similarity=0.315  Sum_probs=50.6

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCc-ccHHHHHHHHHHHcCCCccEEEE
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      ++++|+|+ |++|..+++.+...|++ ++.++++.++.+.++..+... +..+-.+ ++..+.+.++   .+.++|+++.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~~-v~~~~r~~~~~~~~~~~~~~~-~~~D~~~~~~v~~~~~~~---~~~~~d~vi~   76 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGWR-VIATARDAAALAALQALGAEA-LALDVADPASVAGLAWKL---DGEALDAAVY   76 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCCE-EEEEECCHHHHHHHHhccceE-EEecCCCHHHHHHHHHHh---cCCCCCEEEE
Confidence            46889986 99999999988888985 888899887777666555432 2222122 2222222222   3457999999


Q ss_pred             cCCC
Q 048013          175 CAGF  178 (216)
Q Consensus       175 ~~g~  178 (216)
                      +.|.
T Consensus        77 ~ag~   80 (222)
T PRK06953         77 VAGV   80 (222)
T ss_pred             CCCc
Confidence            8875

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.19  E-value=0.028  Score=37.20  Aligned_cols=85  Identities=19%  Similarity=0.236  Sum_probs=53.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC---CCeEE-EEcCChHHHHHH-HHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           98 NVLIMGSGPIGLVTMLAARAFG---APRIV-IVDVDDYRLSVA-KKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g---~~~vv-~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      +|.++|+|.+|.+.++-+...|   .+ +. +.+++.++.+.+ ++++.....      .+..+.++        ..|++
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~-v~~~~~r~~~~~~~~~~~~~~~~~~------~~~~~~~~--------~advv   65 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHE-VIIVSSRSPEKAAELAKEYGVQATA------DDNEEAAQ--------EADVV   65 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGE-EEEEEESSHHHHHHHHHHCTTEEES------EEHHHHHH--------HTSEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCcee-EEeeccCcHHHHHHHHHhhcccccc------CChHHhhc--------cCCEE
Confidence            4778899999999999999888   64 66 448999887765 566644321      12222222        48999


Q ss_pred             EEcCCCHHHHHHHHHH---hhcCCEEEEe
Q 048013          173 FDCAGFNKTMSTALSA---TRAGGKVCLV  198 (216)
Q Consensus       173 i~~~g~~~~~~~~~~~---l~~~G~~v~~  198 (216)
                      |-++.... +...++.   ..++..++.+
T Consensus        66 ilav~p~~-~~~v~~~i~~~~~~~~vis~   93 (96)
T PF03807_consen   66 ILAVKPQQ-LPEVLSEIPHLLKGKLVISI   93 (96)
T ss_dssp             EE-S-GGG-HHHHHHHHHHHHTTSEEEEE
T ss_pred             EEEECHHH-HHHHHHHHhhccCCCEEEEe
Confidence            99999843 3333333   4455555543

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PLN02780 ketoreductase/ oxidoreductase

Probab=97.19  E-value=0.0042  Score=50.95  Aligned_cols=41  Identities=20%  Similarity=0.179  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA  136 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~  136 (216)
                      .|++++|+|+ +++|...++.+...|++ |+.+++++++.+.+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~-Vil~~R~~~~l~~~   93 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLN-LVLVARNPDKLKDV   93 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCC-EEEEECCHHHHHHH
Confidence            5789999996 89999999888888995 88999998876644

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=97.19  E-value=0.014  Score=43.87  Aligned_cols=100  Identities=18%  Similarity=0.286  Sum_probs=64.0

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      ....+.++.+||-+|+|. |..++.+++.....+++++|.+++..+.+++    ++...+....   .+...   .    
T Consensus        25 ~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~---~d~~~---~----   93 (187)
T PRK08287         25 SKLELHRAKHLIDVGAGT-GSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIP---GEAPI---E----   93 (187)
T ss_pred             HhcCCCCCCEEEEECCcC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEe---cCchh---h----
Confidence            445667889999999864 6666777776533369999999887766643    4443322211   11111   1    


Q ss_pred             cCCCccEEEEcCCC---HHHHHHHHHHhhcCCEEEEec
Q 048013          165 MGTGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       165 ~~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ....+|+++.....   ...+..+.+.|+++|++++..
T Consensus        94 ~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~  131 (187)
T PRK08287         94 LPGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTF  131 (187)
T ss_pred             cCcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEE
Confidence            13469999864321   346678889999999998653

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.19  E-value=0.0079  Score=45.90  Aligned_cols=47  Identities=21%  Similarity=0.310  Sum_probs=39.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-HcCC
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KLGA  141 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~g~  141 (216)
                      -.+++++|+|.|.+|..+++.+...|++ |++.|++.++.+.+. .++.
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~-Vvv~D~~~~~~~~~~~~~g~   73 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGAK-LIVADINEEAVARAAELFGA   73 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHcCC
Confidence            4678999999999999999999999995 889999988766654 4454

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK07024 short chain dehydrogenase; Provisional

Probab=97.18  E-value=0.0051  Score=48.48  Aligned_cols=81  Identities=20%  Similarity=0.190  Sum_probs=51.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-HcCCC-E--EEeCCC-CcccHHHHHHHHHHHcCCCc
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KLGAD-N--IVKVST-NLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~g~~-~--~~~~~~-~~~~~~~~~~~~~~~~~~~~  169 (216)
                      +++++|+|+ |++|..+++.+...|++ |++++++.++.+.+. ++... .  .+..+- +.++..+.+.++.+.. ..+
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~-g~i   79 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGAT-LGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAH-GLP   79 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhC-CCC
Confidence            468999986 99999999999889994 888999887765443 33221 1  222221 2223333344443222 358


Q ss_pred             cEEEEcCCC
Q 048013          170 DVSFDCAGF  178 (216)
Q Consensus       170 d~vi~~~g~  178 (216)
                      |+++.++|.
T Consensus        80 d~lv~~ag~   88 (257)
T PRK07024         80 DVVIANAGI   88 (257)
T ss_pred             CEEEECCCc
Confidence            999998873

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.18  E-value=0.0043  Score=50.51  Aligned_cols=102  Identities=18%  Similarity=0.148  Sum_probs=68.0

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChHHHHH-HHHcCCCEEEeCCCCcccHHHHHHHHHHHcC
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARA-FGAPRIVIVDVDDYRLSV-AKKLGADNIVKVSTNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~-~g~~~vv~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      +........+++|+|+|..|...+..+.. .+.+.+.+.+++.++.+. ++++..... ...  ..+..+.+        
T Consensus       118 ~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~-~~~--~~~~~~av--------  186 (304)
T PRK07340        118 RTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGP-TAE--PLDGEAIP--------  186 (304)
T ss_pred             HHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCC-eeE--ECCHHHHh--------
Confidence            44444677899999999999998888864 677789999999887654 444532110 000  11222222        


Q ss_pred             CCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          167 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       167 ~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      ...|+|+.++.+...+-..  .++|+-.+..+|...+
T Consensus       187 ~~aDiVitaT~s~~Pl~~~--~~~~g~hi~~iGs~~p  221 (304)
T PRK07340        187 EAVDLVVTATTSRTPVYPE--AARAGRLVVAVGAFTP  221 (304)
T ss_pred             hcCCEEEEccCCCCceeCc--cCCCCCEEEecCCCCC
Confidence            3699999999985543233  3789999999996544

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.17  E-value=0.0016  Score=52.30  Aligned_cols=47  Identities=28%  Similarity=0.348  Sum_probs=40.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcC
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLG  140 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g  140 (216)
                      .++++++|+|+|+.+.+++..++..|+++++++.|+.++.+.+ +.++
T Consensus       124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~  171 (283)
T COG0169         124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFG  171 (283)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhh
Confidence            3578999999999999999999999988899999999886655 3444

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=97.17  E-value=0.0018  Score=50.69  Aligned_cols=107  Identities=24%  Similarity=0.357  Sum_probs=63.7

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAP-RIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~-~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      +....+++.+||-.|+|. |..+..+++..+.. .|+++|.+++=++.+++    .+...+..+..+.++.       . 
T Consensus        41 ~~~~~~~g~~vLDv~~Gt-G~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l-------p-  111 (233)
T PF01209_consen   41 KLLGLRPGDRVLDVACGT-GDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL-------P-  111 (233)
T ss_dssp             HHHT--S--EEEEET-TT-SHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB----------
T ss_pred             hccCCCCCCEEEEeCCCh-HHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh-------c-
Confidence            456778999999998765 77888888876632 69999999987776643    3333332211111221       0 


Q ss_pred             HcCCCccEEEEcCCC------HHHHHHHHHHhhcCCEEEEeccCCCC
Q 048013          164 AMGTGIDVSFDCAGF------NKTMSTALSATRAGGKVCLVGMGHRE  204 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~------~~~~~~~~~~l~~~G~~v~~g~~~~~  204 (216)
                      .....||+|..+.|-      ...++++.+.|+|||+++++.+..+.
T Consensus       112 ~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~  158 (233)
T PF01209_consen  112 FPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPR  158 (233)
T ss_dssp             S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred             CCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence            123569999987763      35678999999999999988865543

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=97.16  E-value=0.013  Score=45.66  Aligned_cols=82  Identities=22%  Similarity=0.256  Sum_probs=48.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChHH-HHHH---HHcCCCEEE-eCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIV-DVDDYR-LSVA---KKLGADNIV-KVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~-~~~~~~-~~~~---~~~g~~~~~-~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      ++++++|+|+ |++|..+++.+...|++ +++. +++..+ .+.+   ++.+..... ..+- +.++..+.+.++.+. .
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~-vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~   79 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGFK-VVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAE-V   79 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCE-EEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH-h
Confidence            3678999996 99999999999999996 5553 333332 2222   333443321 1111 222333334444332 2


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      +++|+++.++|.
T Consensus        80 ~~id~li~~ag~   91 (246)
T PRK12938         80 GEIDVLVNNAGI   91 (246)
T ss_pred             CCCCEEEECCCC
Confidence            479999999985

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=97.14  E-value=0.05  Score=44.22  Aligned_cols=140  Identities=12%  Similarity=0.126  Sum_probs=86.6

Q ss_pred             CccceeEEecCCceEECCCCCCchhhhcchhhHHHHHHHHH---cCCCCCCEEEEEcC-CHHHHHHHHHHH-HcCCCeEE
Q 048013           50 GCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRR---ANIGPETNVLIMGS-GPIGLVTMLAAR-AFGAPRIV  124 (216)
Q Consensus        50 g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~---~~~~~~~~vlv~Ga-g~~G~~~i~~a~-~~g~~~vv  124 (216)
                      -.|-+|.++..+....  +.....++.+-+.+.|+|-.-+.   ..--..+.|+|.+| +.+++.++..++ ..+..++|
T Consensus        89 ~~YN~Y~r~~~d~~y~--~~~e~~~~LlrPLf~Tsfll~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~v  166 (314)
T PF11017_consen   89 PIYNQYLRVSADPAYD--PEREDWQMLLRPLFITSFLLDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVV  166 (314)
T ss_pred             hhhhceeecCCCcccC--cchhHHHHHHHHHHHHHHHHHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceEE
Confidence            4577777776554431  11222222233456677654332   22334467777776 788888888888 44444688


Q ss_pred             EEcCChHHHHHHHHcCCC-EEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCC-EEEEeccCC
Q 048013          125 IVDVDDYRLSVAKKLGAD-NIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGG-KVCLVGMGH  202 (216)
Q Consensus       125 ~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G-~~v~~g~~~  202 (216)
                      .++ +..+....+.+|.. .++.|++        +.++   ....--+++|..|+.+....+.+.+...= ..+.+|++.
T Consensus       167 glT-S~~N~~Fve~lg~Yd~V~~Yd~--------i~~l---~~~~~~v~VDfaG~~~~~~~Lh~~l~d~l~~~~~VG~th  234 (314)
T PF11017_consen  167 GLT-SARNVAFVESLGCYDEVLTYDD--------IDSL---DAPQPVVIVDFAGNGEVLAALHEHLGDNLVYSCLVGATH  234 (314)
T ss_pred             EEe-cCcchhhhhccCCceEEeehhh--------hhhc---cCCCCEEEEECCCCHHHHHHHHHHHhhhhhEEEEEEccC
Confidence            885 45566688889874 5666643        3333   23456789999999888788888887653 567778755


Q ss_pred             C
Q 048013          203 R  203 (216)
Q Consensus       203 ~  203 (216)
                      .
T Consensus       235 ~  235 (314)
T PF11017_consen  235 W  235 (314)
T ss_pred             c
Confidence            4

>PRK06523 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.017  Score=45.45  Aligned_cols=76  Identities=18%  Similarity=0.206  Sum_probs=48.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCC-EEEeCCCC-cccHHHHHHHHHHHcCCCccE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGAD-NIVKVSTN-LQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      +++++||.|+ |++|..+++.+...|++ |++++++....     .+.. ..+..+-. .++..+.+.++.+. .+++|+
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~r~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~id~   80 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGAR-VVTTARSRPDD-----LPEGVEFVAADLTTAEGCAAVARAVLER-LGGVDI   80 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCCE-EEEEeCChhhh-----cCCceeEEecCCCCHHHHHHHHHHHHHH-cCCCCE
Confidence            5789999996 89999999999889995 88888875432     1111 11221211 22333333444322 347999


Q ss_pred             EEEcCC
Q 048013          172 SFDCAG  177 (216)
Q Consensus       172 vi~~~g  177 (216)
                      +|+++|
T Consensus        81 vi~~ag   86 (260)
T PRK06523         81 LVHVLG   86 (260)
T ss_pred             EEECCc
Confidence            999987

>PRK05650 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.034  Score=44.16  Aligned_cols=79  Identities=20%  Similarity=0.312  Sum_probs=49.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEE-EeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNI-VKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      +++|+|+ |++|..+++.+...|++ |+.++++.++.+.+    +..+.... +..+- +.++..+.+.++.. ...++|
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~-~~~~id   79 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGWR-LALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEE-KWGGID   79 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH-HcCCCC
Confidence            6899986 99999999988889995 88888887765533    22233321 22211 11222333333322 234799


Q ss_pred             EEEEcCCC
Q 048013          171 VSFDCAGF  178 (216)
Q Consensus       171 ~vi~~~g~  178 (216)
                      ++|.++|.
T Consensus        80 ~lI~~ag~   87 (270)
T PRK05650         80 VIVNNAGV   87 (270)
T ss_pred             EEEECCCC
Confidence            99999884

>PRK06125 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.024  Score=44.68  Aligned_cols=79  Identities=27%  Similarity=0.322  Sum_probs=50.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-Hc----CCC-EEEeCCCCcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KL----GAD-NIVKVSTNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~----g~~-~~~~~~~~~~~~~~~~~~~~~~~~~  167 (216)
                      .+++++|.|+ +++|..+++.+...|+ +|++++++.++.+.+. ++    +.. ..+..+-  .+. +.+.++.+.. .
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~--~~~-~~~~~~~~~~-g   80 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDL--SSP-EAREQLAAEA-G   80 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecC--CCH-HHHHHHHHHh-C
Confidence            4689999996 8999999999988999 4889988877655432 22    222 1222211  121 2233322222 4


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.+.|.
T Consensus        81 ~id~lv~~ag~   91 (259)
T PRK06125         81 DIDILVNNAGA   91 (259)
T ss_pred             CCCEEEECCCC
Confidence            69999999874

>PRK12746 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.018  Score=45.18  Aligned_cols=83  Identities=17%  Similarity=0.333  Sum_probs=49.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEE-EcCChHHHHHH-HHc---CCCE-EEeCCC-CcccHHHHHHHHHHHc-
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVI-VDVDDYRLSVA-KKL---GADN-IVKVST-NLQDIAEEVEKIQKAM-  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~-~~~~~~~~~~~-~~~---g~~~-~~~~~~-~~~~~~~~~~~~~~~~-  165 (216)
                      .+++++|+|+ |++|..+++.+...|++ |++ ..++.++.+.. +++   +... .+..+- +.+++.+.++++.+.. 
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~G~~-v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~   83 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLANDGAL-VAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQ   83 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhc
Confidence            3578999996 99999999998888985 555 46666554322 222   2221 222221 2233333444443222 


Q ss_pred             ----CCCccEEEEcCCC
Q 048013          166 ----GTGIDVSFDCAGF  178 (216)
Q Consensus       166 ----~~~~d~vi~~~g~  178 (216)
                          ..++|++|.+.|.
T Consensus        84 ~~~~~~~id~vi~~ag~  100 (254)
T PRK12746         84 IRVGTSEIDILVNNAGI  100 (254)
T ss_pred             cccCCCCccEEEECCCC
Confidence                1469999999874

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=97.13  E-value=0.0071  Score=49.45  Aligned_cols=81  Identities=21%  Similarity=0.344  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCC---C-EEEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGA---D-NIVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~---~-~~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .+++++|+|+ |++|..+++.+...|++ |++++++.++.+.+ +++..   . ..+..+- +..+..+.+.++. ..+.
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~-~~~~   82 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGWH-VIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFR-ALGK   82 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHH-HhCC
Confidence            4678999996 99999999988889985 88888888775543 33321   1 1111111 1222333333432 2345


Q ss_pred             CccEEEEcCC
Q 048013          168 GIDVSFDCAG  177 (216)
Q Consensus       168 ~~d~vi~~~g  177 (216)
                      ++|++|+++|
T Consensus        83 ~iD~li~nAg   92 (322)
T PRK07453         83 PLDALVCNAA   92 (322)
T ss_pred             CccEEEECCc
Confidence            6999999987

>PRK06940 short chain dehydrogenase; Provisional

Probab=97.12  E-value=0.018  Score=46.05  Aligned_cols=101  Identities=17%  Similarity=0.238  Sum_probs=61.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH---cCCCE-EEeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK---LGADN-IVKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~---~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      ++++|.|+|++|..+++.+. .|++ |+.+++++++.+.+ ++   .+... .+..+- +.++..+.+.++ +. -.++|
T Consensus         3 k~~lItGa~gIG~~la~~l~-~G~~-Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~-~~-~g~id   78 (275)
T PRK06940          3 EVVVVIGAGGIGQAIARRVG-AGKK-VLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATA-QT-LGPVT   78 (275)
T ss_pred             CEEEEECCChHHHHHHHHHh-CCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHH-Hh-cCCCC
Confidence            57888898999999998885 7884 88888887665433 22   23221 122221 222333344443 22 24799


Q ss_pred             EEEEcCCCH---H---------------HHHHHHHHhhcCCEEEEeccC
Q 048013          171 VSFDCAGFN---K---------------TMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       171 ~vi~~~g~~---~---------------~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      ++|.++|..   .               .++.+++.+..+|+++.++..
T Consensus        79 ~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~  127 (275)
T PRK06940         79 GLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQ  127 (275)
T ss_pred             EEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEec
Confidence            999999841   1               234555666667777766543

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=97.12  E-value=0.011  Score=46.75  Aligned_cols=98  Identities=21%  Similarity=0.267  Sum_probs=67.9

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHc
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      .+......++.+||-+|+|. |..+..+++.. +. +|+++|.++.-.+.+++.+.....      .+.    .++.  .
T Consensus        21 ll~~l~~~~~~~vLDlGcG~-G~~~~~l~~~~p~~-~v~gvD~s~~~~~~a~~~~~~~~~------~d~----~~~~--~   86 (255)
T PRK14103         21 LLARVGAERARRVVDLGCGP-GNLTRYLARRWPGA-VIEALDSSPEMVAAARERGVDART------GDV----RDWK--P   86 (255)
T ss_pred             HHHhCCCCCCCEEEEEcCCC-CHHHHHHHHHCCCC-EEEEEECCHHHHHHHHhcCCcEEE------cCh----hhCC--C
Confidence            34555667889999999875 67777777765 45 599999999888888765543221      121    1221  2


Q ss_pred             CCCccEEEEcCC-----C-HHHHHHHHHHhhcCCEEEEe
Q 048013          166 GTGIDVSFDCAG-----F-NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       166 ~~~~d~vi~~~g-----~-~~~~~~~~~~l~~~G~~v~~  198 (216)
                      ...||+|+....     + ...++.+.+.|+|+|++++.
T Consensus        87 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         87 KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence            347999998553     2 34567888999999999865

>PLN02244 tocopherol O-methyltransferase

Probab=97.11  E-value=0.012  Score=48.81  Aligned_cols=97  Identities=15%  Similarity=0.195  Sum_probs=63.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCC-EEEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGAD-NIVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      +++++||-+|+|. |..+..+++..|++ |+++|.++...+.+++    .+.. .+....   .|.    .++. .....
T Consensus       117 ~~~~~VLDiGCG~-G~~~~~La~~~g~~-v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~---~D~----~~~~-~~~~~  186 (340)
T PLN02244        117 KRPKRIVDVGCGI-GGSSRYLARKYGAN-VKGITLSPVQAARANALAAAQGLSDKVSFQV---ADA----LNQP-FEDGQ  186 (340)
T ss_pred             CCCCeEEEecCCC-CHHHHHHHHhcCCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEE---cCc----ccCC-CCCCC
Confidence            6788999999875 66777888877884 9999999887665543    2332 111111   111    1110 12356


Q ss_pred             ccEEEEcCCC------HHHHHHHHHHhhcCCEEEEecc
Q 048013          169 IDVSFDCAGF------NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       169 ~d~vi~~~g~------~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      ||+|+..-..      ...++.+.+.|+|+|++++...
T Consensus       187 FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        187 FDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             ccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9999874332      2467889999999999987653

>PRK07478 short chain dehydrogenase; Provisional

Probab=97.11  E-value=0.0085  Score=47.08  Aligned_cols=82  Identities=18%  Similarity=0.211  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .+++++|.|+ |++|..+++.+...|++ |+.+++++++.+.+    ++.+... .+..+- +.++..+.+.++.+.. .
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~   82 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGAK-VVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERF-G   82 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhc-C
Confidence            4678999996 89999999999889995 88888888776543    2233332 222222 2223333444443333 3


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.++|.
T Consensus        83 ~id~li~~ag~   93 (254)
T PRK07478         83 GLDIAFNNAGT   93 (254)
T ss_pred             CCCEEEECCCC
Confidence            79999999874

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=97.11  E-value=0.017  Score=41.36  Aligned_cols=95  Identities=23%  Similarity=0.330  Sum_probs=57.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh-------------------HH----HHHHHHcCCC-EEEeCCCCccc
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD-------------------YR----LSVAKKLGAD-NIVKVSTNLQD  153 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~-------------------~~----~~~~~~~g~~-~~~~~~~~~~~  153 (216)
                      +|+|+|+|++|..+++.+...|..++..+|.+.                   .|    .+.++++... .+..++.   .
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~---~   77 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPE---G   77 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEee---e
Confidence            478999999999999999999998888887652                   11    1222333432 2211111   1


Q ss_pred             HHH-HHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCE-EEEec
Q 048013          154 IAE-EVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGK-VCLVG  199 (216)
Q Consensus       154 ~~~-~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~-~v~~g  199 (216)
                      +.+ ...+    .-.++|+||+|..+........+.++..+. ++..|
T Consensus        78 ~~~~~~~~----~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~  121 (143)
T cd01483          78 ISEDNLDD----FLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAG  121 (143)
T ss_pred             cChhhHHH----HhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence            111 1111    124799999999995554555566666664 34444

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK04148 hypothetical protein; Provisional

Probab=97.11  E-value=0.008  Score=42.62  Aligned_cols=95  Identities=13%  Similarity=0.233  Sum_probs=66.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      .++.+++++|.| .|...+..+...|.+ |+++|.+++..+.+++.+...+.. +-.+.+.     +    .-+++|++.
T Consensus        15 ~~~~kileIG~G-fG~~vA~~L~~~G~~-ViaIDi~~~aV~~a~~~~~~~v~d-Dlf~p~~-----~----~y~~a~liy   82 (134)
T PRK04148         15 GKNKKIVELGIG-FYFKVAKKLKESGFD-VIVIDINEKAVEKAKKLGLNAFVD-DLFNPNL-----E----IYKNAKLIY   82 (134)
T ss_pred             ccCCEEEEEEec-CCHHHHHHHHHCCCE-EEEEECCHHHHHHHHHhCCeEEEC-cCCCCCH-----H----HHhcCCEEE
Confidence            456789999998 787666666678985 999999999999998888765543 1111121     1    134799999


Q ss_pred             EcCCCHHHHHHHHHHhhc-CCEEEEecc
Q 048013          174 DCAGFNKTMSTALSATRA-GGKVCLVGM  200 (216)
Q Consensus       174 ~~~g~~~~~~~~~~~l~~-~G~~v~~g~  200 (216)
                      ..-..++.....+++.+. +.-+++.=+
T Consensus        83 sirpp~el~~~~~~la~~~~~~~~i~~l  110 (134)
T PRK04148         83 SIRPPRDLQPFILELAKKINVPLIIKPL  110 (134)
T ss_pred             EeCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence            999988877777776654 444444433

>PLN02253 xanthoxin dehydrogenase

Probab=97.11  E-value=0.0063  Score=48.59  Aligned_cols=82  Identities=22%  Similarity=0.288  Sum_probs=51.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCC--C-EEEeCC-CCcccHHHHHHHHHHHcCCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGA--D-NIVKVS-TNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~--~-~~~~~~-~~~~~~~~~~~~~~~~~~~~  168 (216)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++++.+.+ ++++.  . ..+..+ .+.+...+.+.++.+.. ++
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~-g~   94 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGAK-VCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKF-GT   94 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHh-CC
Confidence            4678999986 89999999988889995 88888876654433 33422  1 122211 12223334444443333 46


Q ss_pred             ccEEEEcCCC
Q 048013          169 IDVSFDCAGF  178 (216)
Q Consensus       169 ~d~vi~~~g~  178 (216)
                      +|++|.++|.
T Consensus        95 id~li~~Ag~  104 (280)
T PLN02253         95 LDIMVNNAGL  104 (280)
T ss_pred             CCEEEECCCc
Confidence            9999998874

>PRK05855 short chain dehydrogenase; Validated

Probab=97.11  E-value=0.02  Score=50.45  Aligned_cols=82  Identities=23%  Similarity=0.272  Sum_probs=52.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .+.++||+|+ |++|..+++.+...|++ |+.++++.++.+.+    ++.+... .+..|- +.+...+.+.++.+. .+
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~-~g  391 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGAE-VVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAE-HG  391 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHh-cC
Confidence            4578999986 99999999999889995 88889988776543    2234321 222221 222333334444322 34


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|+++|.
T Consensus       392 ~id~lv~~Ag~  402 (582)
T PRK05855        392 VPDIVVNNAGI  402 (582)
T ss_pred             CCcEEEECCcc
Confidence            69999999985

>PRK05854 short chain dehydrogenase; Provisional

Probab=97.11  E-value=0.0083  Score=48.95  Aligned_cols=82  Identities=17%  Similarity=0.240  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc----CCCE--EEeCCC-CcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL----GADN--IVKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~----g~~~--~~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      .+++++|+|+ +++|..+++.+...|++ |+.+.++.++.+.+ +++    +...  .+..+- +.++..+.+.++.+ .
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~-Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~-~   90 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAE-VILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRA-E   90 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH-h
Confidence            4689999996 89999999998889995 88888887765433 222    1111  122121 22233333444432 2


Q ss_pred             CCCccEEEEcCCC
Q 048013          166 GTGIDVSFDCAGF  178 (216)
Q Consensus       166 ~~~~d~vi~~~g~  178 (216)
                      ..++|++|+++|.
T Consensus        91 ~~~iD~li~nAG~  103 (313)
T PRK05854         91 GRPIHLLINNAGV  103 (313)
T ss_pred             CCCccEEEECCcc
Confidence            3579999998874

>PRK04266 fibrillarin; Provisional

Probab=97.11  E-value=0.015  Score=45.28  Aligned_cols=104  Identities=13%  Similarity=0.190  Sum_probs=61.9

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc-C-CCEEEeCCCCcccHHHHHHHHHHHcC
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL-G-ADNIVKVSTNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~-g-~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      +...++++++||-.|+|. |..+..+++..+-..|+++|.+++.++.+.+. . ..++..+..+..+.. ....+    .
T Consensus        66 ~~l~i~~g~~VlD~G~G~-G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~-~~~~l----~  139 (226)
T PRK04266         66 KNFPIKKGSKVLYLGAAS-GTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPE-RYAHV----V  139 (226)
T ss_pred             hhCCCCCCCEEEEEccCC-CHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcc-hhhhc----c
Confidence            457789999999999764 55566666665423699999999766544221 1 122211111111110 00111    2


Q ss_pred             CCccEEEEcCCCHH----HHHHHHHHhhcCCEEEEe
Q 048013          167 TGIDVSFDCAGFNK----TMSTALSATRAGGKVCLV  198 (216)
Q Consensus       167 ~~~d~vi~~~g~~~----~~~~~~~~l~~~G~~v~~  198 (216)
                      ..+|+++.....+.    .++.+.+.|+|+|++++.
T Consensus       140 ~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        140 EKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             ccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            35999996555422    357888899999999983

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.10  E-value=0.0028  Score=50.18  Aligned_cols=95  Identities=23%  Similarity=0.318  Sum_probs=61.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCC-EEEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGAD-NIVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      .++.+||-+|+|. |..+..+++. |. .|+++|.+++.++.+++    .+.. .+..+.   .+.    .++.......
T Consensus        43 ~~~~~vLDiGcG~-G~~a~~la~~-g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~---~d~----~~l~~~~~~~  112 (255)
T PRK11036         43 PRPLRVLDAGGGE-GQTAIKLAEL-GH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIH---CAA----QDIAQHLETP  112 (255)
T ss_pred             CCCCEEEEeCCCc-hHHHHHHHHc-CC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEE---cCH----HHHhhhcCCC
Confidence            4567899999875 7777777774 76 59999999988877754    2322 111111   122    1221113457


Q ss_pred             ccEEEEcCC-----C-HHHHHHHHHHhhcCCEEEEe
Q 048013          169 IDVSFDCAG-----F-NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       169 ~d~vi~~~g-----~-~~~~~~~~~~l~~~G~~v~~  198 (216)
                      +|+|+....     + ...++.+.+.|+|+|+++++
T Consensus       113 fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        113 VDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             CCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence            999986432     2 34568899999999999765

>PRK09291 short chain dehydrogenase; Provisional

Probab=97.10  E-value=0.005  Score=48.35  Aligned_cols=75  Identities=17%  Similarity=0.208  Sum_probs=47.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----HcCCCE-EEeCCCCcccHHHHHHHHHHHcCCCc
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KLGADN-IVKVSTNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      ++++||+|+ |++|..+++.+...|++ |++++++.++.+.+.    ..+... .+..+-  .+. +.+.+.   ...++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~--~~~-~~~~~~---~~~~i   74 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHN-VIAGVQIAPQVTALRAEAARRGLALRVEKLDL--TDA-IDRAQA---AEWDV   74 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcceEEEeeC--CCH-HHHHHH---hcCCC
Confidence            357999996 99999999999999985 888888876554432    223221 111111  121 123222   23479


Q ss_pred             cEEEEcCC
Q 048013          170 DVSFDCAG  177 (216)
Q Consensus       170 d~vi~~~g  177 (216)
                      |++|.++|
T Consensus        75 d~vi~~ag   82 (257)
T PRK09291         75 DVLLNNAG   82 (257)
T ss_pred             CEEEECCC
Confidence            99999987

>PRK00536 speE spermidine synthase; Provisional

Probab=97.10  E-value=0.0027  Score=50.35  Aligned_cols=101  Identities=10%  Similarity=-0.110  Sum_probs=63.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      ....++|||+|+|- |..+-.++|.-.  +|+.++.+++-.+.++++-....-..++..-+....+.   +.....+|+|
T Consensus        70 h~~pk~VLIiGGGD-Gg~~REvLkh~~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~---~~~~~~fDVI  143 (262)
T PRK00536         70 KKELKEVLIVDGFD-LELAHQLFKYDT--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLL---DLDIKKYDLI  143 (262)
T ss_pred             CCCCCeEEEEcCCc-hHHHHHHHCcCC--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhh---hccCCcCCEE
Confidence            45679999998764 445666777643  69999999998888887322100001111111111111   1223579996


Q ss_pred             E-EcCCCHHHHHHHHHHhhcCCEEEEec
Q 048013          173 F-DCAGFNKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       173 i-~~~g~~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      | |.+-+++..+.+.+.|+++|.++.=+
T Consensus       144 IvDs~~~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        144 ICLQEPDIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             EEcCCCChHHHHHHHHhcCCCcEEEECC
Confidence            5 44667788889999999999998654

>CHL00194 ycf39 Ycf39; Provisional

Probab=97.09  E-value=0.014  Score=47.66  Aligned_cols=94  Identities=16%  Similarity=0.200  Sum_probs=59.6

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      +|+|+|+ |-+|..+++.+...|.+ |++++++.++...+...+...+. .+-.  +. +.+.+..    .++|+||.++
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~-V~~l~R~~~~~~~l~~~~v~~v~-~Dl~--d~-~~l~~al----~g~d~Vi~~~   72 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQ-VRCLVRNLRKASFLKEWGAELVY-GDLS--LP-ETLPPSF----KGVTAIIDAS   72 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCe-EEEEEcChHHhhhHhhcCCEEEE-CCCC--CH-HHHHHHH----CCCCEEEECC
Confidence            6899996 99999999999889985 88888887665544444554332 1111  11 1232221    3689999987


Q ss_pred             CCH------------HHHHHHHHHhhcCC--EEEEecc
Q 048013          177 GFN------------KTMSTALSATRAGG--KVCLVGM  200 (216)
Q Consensus       177 g~~------------~~~~~~~~~l~~~G--~~v~~g~  200 (216)
                      +..            ......++.++..|  +++.+|.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss  110 (317)
T CHL00194         73 TSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI  110 (317)
T ss_pred             CCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence            631            11234556665555  7888775

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=97.09  E-value=0.012  Score=45.34  Aligned_cols=115  Identities=25%  Similarity=0.353  Sum_probs=72.0

Q ss_pred             CCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc----CCCEEEeCC---CCcccHHHHHHHHHHHcCC
Q 048013           96 ETNVLIMG-SGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL----GADNIVKVS---TNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        96 ~~~vlv~G-ag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~----g~~~~~~~~---~~~~~~~~~~~~~~~~~~~  167 (216)
                      |+++++.| +|++|+.....+...|+. +.+++-+.|+.+...+|    ....++.+.   ....+..+..+++..+.| 
T Consensus         5 GKna~vtggagGIGl~~sk~Ll~kgik-~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~fg-   82 (261)
T KOG4169|consen    5 GKNALVTGGAGGIGLATSKALLEKGIK-VLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATFG-   82 (261)
T ss_pred             CceEEEecCCchhhHHHHHHHHHcCch-heeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHhC-
Confidence            78899997 699999999999999997 66666666665554443    222232211   223445555555554444 


Q ss_pred             CccEEEEcCCCH-----------------HHHHHHHHHhh-----cCCEEEEeccCCCCCcccchhh
Q 048013          168 GIDVSFDCAGFN-----------------KTMSTALSATR-----AGGKVCLVGMGHREMTVPLTPA  212 (216)
Q Consensus       168 ~~d~vi~~~g~~-----------------~~~~~~~~~l~-----~~G~~v~~g~~~~~~~~~~~~~  212 (216)
                      -+|+.|+..|-.                 .....+++.+.     ++|.++.+|...+--+.+..|+
T Consensus        83 ~iDIlINgAGi~~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P~p~~pV  149 (261)
T KOG4169|consen   83 TIDILINGAGILDDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDPMPVFPV  149 (261)
T ss_pred             ceEEEEcccccccchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCccccchh
Confidence            689999988841                 12344555552     5688998886555344444444

>PRK07791 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.033  Score=44.78  Aligned_cols=83  Identities=25%  Similarity=0.327  Sum_probs=50.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh---------HHHH-HHHH---cCCCE-EEeCC-CCcccHHHH
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDD---------YRLS-VAKK---LGADN-IVKVS-TNLQDIAEE  157 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~---------~~~~-~~~~---~g~~~-~~~~~-~~~~~~~~~  157 (216)
                      -+++++||+|+ +++|..+++.+...|++ |++++++.         ++.+ ..++   .+... .+..+ .+.++..+.
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~-vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~   82 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGAR-VVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANL   82 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHH
Confidence            46789999996 89999999988889995 77776653         3322 2222   23332 12222 122333444


Q ss_pred             HHHHHHHcCCCccEEEEcCCC
Q 048013          158 VEKIQKAMGTGIDVSFDCAGF  178 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~  178 (216)
                      +.++.+.. +++|++|+++|.
T Consensus        83 ~~~~~~~~-g~id~lv~nAG~  102 (286)
T PRK07791         83 VDAAVETF-GGLDVLVNNAGI  102 (286)
T ss_pred             HHHHHHhc-CCCCEEEECCCC
Confidence            44444333 469999999884

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.08  E-value=0.015  Score=44.87  Aligned_cols=35  Identities=29%  Similarity=0.401  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      ...+|+|+|+|++|..+++.+...|..+++.+|.+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45679999999999999999999999889999887

>PRK08703 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.0076  Score=46.90  Aligned_cols=83  Identities=19%  Similarity=0.339  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH---cCCCE--E--EeCCC-CcccHHHHHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK---LGADN--I--VKVST-NLQDIAEEVEKIQKA  164 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~---~g~~~--~--~~~~~-~~~~~~~~~~~~~~~  164 (216)
                      ++++++|.|+ |++|..+++.+...|++ |+++++++++.+.+ ++   .+...  .  .+..+ ..+++.+...++.+.
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~   83 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGAT-VILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA   83 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCE-EEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence            4678999996 89999999999889995 89999988765543 22   22111  1  12211 112333334444333


Q ss_pred             cCCCccEEEEcCCC
Q 048013          165 MGTGIDVSFDCAGF  178 (216)
Q Consensus       165 ~~~~~d~vi~~~g~  178 (216)
                      ....+|++|.++|.
T Consensus        84 ~~~~id~vi~~ag~   97 (239)
T PRK08703         84 TQGKLDGIVHCAGY   97 (239)
T ss_pred             hCCCCCEEEEeccc
Confidence            32478999999984

>PLN03139 formate dehydrogenase; Provisional

Probab=97.08  E-value=0.0059  Score=51.23  Aligned_cols=89  Identities=16%  Similarity=0.209  Sum_probs=59.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .|++|.|+|.|.+|..+++.++.+|++ |++.+++....+..++.+....       .+    +.++.    ...|+|+.
T Consensus       198 ~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~~~~~~~~~~~~g~~~~-------~~----l~ell----~~sDvV~l  261 (386)
T PLN03139        198 EGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDRLKMDPELEKETGAKFE-------ED----LDAML----PKCDVVVI  261 (386)
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECCCCcchhhHhhcCceec-------CC----HHHHH----hhCCEEEE
Confidence            578999999999999999999999995 8888887544444444443211       12    22221    23788887


Q ss_pred             cCCCHHHH-----HHHHHHhhcCCEEEEec
Q 048013          175 CAGFNKTM-----STALSATRAGGKVCLVG  199 (216)
Q Consensus       175 ~~g~~~~~-----~~~~~~l~~~G~~v~~g  199 (216)
                      ++......     ...+..|+++..+|.++
T Consensus       262 ~lPlt~~T~~li~~~~l~~mk~ga~lIN~a  291 (386)
T PLN03139        262 NTPLTEKTRGMFNKERIAKMKKGVLIVNNA  291 (386)
T ss_pred             eCCCCHHHHHHhCHHHHhhCCCCeEEEECC
Confidence            77742211     45667788888777776

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=97.07  E-value=0.01  Score=45.11  Aligned_cols=98  Identities=15%  Similarity=0.230  Sum_probs=61.4

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      +.....++.+||.+|+|. |..++.+++. |. .|+++|.+++-.+.+++    .+...+...   ..++    .++  .
T Consensus        24 ~~l~~~~~~~vLDiGcG~-G~~a~~La~~-g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~---~~d~----~~~--~   91 (197)
T PRK11207         24 EAVKVVKPGKTLDLGCGN-GRNSLYLAAN-GF-DVTAWDKNPMSIANLERIKAAENLDNLHTA---VVDL----NNL--T   91 (197)
T ss_pred             HhcccCCCCcEEEECCCC-CHHHHHHHHC-CC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEE---ecCh----hhC--C
Confidence            334456778999999875 7777777774 77 59999999876665543    233221111   1121    111  1


Q ss_pred             cCCCccEEEEcCC----C----HHHHHHHHHHhhcCCEEEEe
Q 048013          165 MGTGIDVSFDCAG----F----NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       165 ~~~~~d~vi~~~g----~----~~~~~~~~~~l~~~G~~v~~  198 (216)
                      ....||+|+....    .    ...++.+.+.|+|+|.++++
T Consensus        92 ~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207         92 FDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             cCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            2346999997643    1    24567888899999996544

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=97.07  E-value=0.022  Score=44.57  Aligned_cols=77  Identities=18%  Similarity=0.228  Sum_probs=48.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCC-EEEeCCC-CcccHHHHHHHHHHHcCCCccE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGAD-NIVKVST-NLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      +++++||+|+ |.+|..+++.+...|++ |+.++++.     ....+.. ..+..+- +.+.+.+.+.++.+. ..++|+
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~~-v~~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~id~   79 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGAK-VIGFDQAF-----LTQEDYPFATFVLDVSDAAAVAQVCQRLLAE-TGPLDV   79 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEecch-----hhhcCCceEEEEecCCCHHHHHHHHHHHHHH-cCCCCE
Confidence            4688999996 89999999998889995 88888775     1222222 1122111 222333444444322 346999


Q ss_pred             EEEcCCC
Q 048013          172 SFDCAGF  178 (216)
Q Consensus       172 vi~~~g~  178 (216)
                      +|.+.|.
T Consensus        80 vi~~ag~   86 (252)
T PRK08220         80 LVNAAGI   86 (252)
T ss_pred             EEECCCc
Confidence            9999885

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=97.07  E-value=0.014  Score=46.20  Aligned_cols=99  Identities=25%  Similarity=0.313  Sum_probs=66.6

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCC-EEEeCCCCcccHHHHHHHHHHHcC
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGAD-NIVKVSTNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      +....++++++||-+|+|. |..+..+++..+..+|+++|.++...+.+++.-.. ..+.     .+.    .++.  ..
T Consensus        24 l~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~-----~d~----~~~~--~~   91 (258)
T PRK01683         24 LARVPLENPRYVVDLGCGP-GNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVE-----ADI----ASWQ--PP   91 (258)
T ss_pred             HhhCCCcCCCEEEEEcccC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEE-----Cch----hccC--CC
Confidence            3445667889999999874 66777788776434699999999888877654222 2221     111    1111  23


Q ss_pred             CCccEEEEcCCC------HHHHHHHHHHhhcCCEEEEe
Q 048013          167 TGIDVSFDCAGF------NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       167 ~~~d~vi~~~g~------~~~~~~~~~~l~~~G~~v~~  198 (216)
                      ..+|+|+....-      ...++.+.+.|+|+|++++.
T Consensus        92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683         92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            479999875442      24678889999999998875

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.07  E-value=0.014  Score=47.03  Aligned_cols=111  Identities=27%  Similarity=0.357  Sum_probs=70.9

Q ss_pred             cCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-cCCCEEE----eCCCCcccH---HHHHHHH
Q 048013           91 ANIGPETNVLIMG-SGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-LGADNIV----KVSTNLQDI---AEEVEKI  161 (216)
Q Consensus        91 ~~~~~~~~vlv~G-ag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~g~~~~~----~~~~~~~~~---~~~~~~~  161 (216)
                      .+.++...++|.| +.++|++++.-++..|+. |.++.++.+|+..+++ +.....+    -++.+-.++   +..++++
T Consensus        28 ~~~k~~~hi~itggS~glgl~la~e~~~~ga~-Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l  106 (331)
T KOG1210|consen   28 VKPKPRRHILITGGSSGLGLALALECKREGAD-VTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEEL  106 (331)
T ss_pred             cccCccceEEEecCcchhhHHHHHHHHHccCc-eEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhh
Confidence            3445667899997 589999999999999996 8889899998877643 4432211    111111122   2223333


Q ss_pred             HHHcCCCccEEEEcCCCH-------------------------HHHHHHHHHhhc---CCEEEEeccCCC
Q 048013          162 QKAMGTGIDVSFDCAGFN-------------------------KTMSTALSATRA---GGKVCLVGMGHR  203 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g~~-------------------------~~~~~~~~~l~~---~G~~v~~g~~~~  203 (216)
                      . .....+|.+|.|+|..                         ....+.++.++.   .|++++++....
T Consensus       107 ~-~~~~~~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a  175 (331)
T KOG1210|consen  107 R-DLEGPIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLA  175 (331)
T ss_pred             h-hccCCcceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhh
Confidence            2 2345799999999972                         134556666643   459999886444

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.07  E-value=0.0042  Score=47.75  Aligned_cols=100  Identities=20%  Similarity=0.174  Sum_probs=63.4

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ++...++++.+||-+|+|. |..+..+++.. . .++.++.+++..+.+++    .+...+.....   +..+...    
T Consensus        71 ~~~l~~~~~~~VLeiG~Gs-G~~t~~la~~~-~-~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~---d~~~~~~----  140 (212)
T PRK00312         71 TELLELKPGDRVLEIGTGS-GYQAAVLAHLV-R-RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG---DGWKGWP----  140 (212)
T ss_pred             HHhcCCCCCCEEEEECCCc-cHHHHHHHHHh-C-EEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC---CcccCCC----
Confidence            4556788999999999764 55555555553 3 59999999877665533    45443221111   1111110    


Q ss_pred             HcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEe
Q 048013          164 AMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~  198 (216)
                       ....||.|+....-....+...+.|+++|+++..
T Consensus       141 -~~~~fD~I~~~~~~~~~~~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        141 -AYAPFDRILVTAAAPEIPRALLEQLKEGGILVAP  174 (212)
T ss_pred             -cCCCcCEEEEccCchhhhHHHHHhcCCCcEEEEE
Confidence             1246999887666556667888999999998754

>PRK06194 hypothetical protein; Provisional

Probab=97.06  E-value=0.0099  Score=47.60  Aligned_cols=82  Identities=22%  Similarity=0.319  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc---CCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL---GADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~---g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.. +++   +... .+..+- +.++..+.+..+.+. ..
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~-~g   82 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGMK-LVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALER-FG   82 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH-cC
Confidence            3578999986 99999999988889995 88888887655433 222   3322 122221 122333333333322 34


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.++|.
T Consensus        83 ~id~vi~~Ag~   93 (287)
T PRK06194         83 AVHLLFNNAGV   93 (287)
T ss_pred             CCCEEEECCCC
Confidence            68999999985

>PLN03075 nicotianamine synthase; Provisional

Probab=97.06  E-value=0.0081  Score=48.45  Aligned_cols=100  Identities=22%  Similarity=0.237  Sum_probs=65.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHHHcC-----CCEEEeCCCCcccHHHHHHHHHHHcC
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAKKLG-----ADNIVKVSTNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      ..++++|+-+|+|+.++.++.+++... -.+++.+|.+++..+.+++.-     ....+.+.  ..|..+    .. ...
T Consensus       121 ~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~--~~Da~~----~~-~~l  193 (296)
T PLN03075        121 NGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFH--TADVMD----VT-ESL  193 (296)
T ss_pred             cCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEE--ECchhh----cc-ccc
Confidence            347899999999988887777776543 236999999999888776532     22211111  122211    11 012


Q ss_pred             CCccEEEEcC------CC-HHHHHHHHHHhhcCCEEEEec
Q 048013          167 TGIDVSFDCA------GF-NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       167 ~~~d~vi~~~------g~-~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      .+||+||-.+      .. ...++...+.|+|||.+++-.
T Consensus       194 ~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        194 KEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             CCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            5799999875      22 356788999999999998654

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.06  E-value=0.013  Score=48.43  Aligned_cols=35  Identities=34%  Similarity=0.540  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      ...+|+|+|+|++|..+++.+...|..++..+|.+
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            44779999999999999999999999889999886

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.05  E-value=0.0078  Score=44.60  Aligned_cols=79  Identities=14%  Similarity=0.154  Sum_probs=55.3

Q ss_pred             CCCCCCEEEEEcCCHH-HHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCcc
Q 048013           92 NIGPETNVLIMGSGPI-GLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~-G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .--.+++|+|+|+|.+ |..+++.++..|++ |+++.++.+                     +    +.+..    ..+|
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~-V~v~~r~~~---------------------~----l~~~l----~~aD   89 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNAT-VTVCHSKTK---------------------N----LKEHT----KQAD   89 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCE-EEEEECCch---------------------h----HHHHH----hhCC
Confidence            3468899999999875 99899999999994 777776521                     1    11111    2489


Q ss_pred             EEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          171 VSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       171 ~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +||.+++.+..+..  +.++++-.++.++.+.
T Consensus        90 iVIsat~~~~ii~~--~~~~~~~viIDla~pr  119 (168)
T cd01080          90 IVIVAVGKPGLVKG--DMVKPGAVVIDVGINR  119 (168)
T ss_pred             EEEEcCCCCceecH--HHccCCeEEEEccCCC
Confidence            99999998553322  2466677778888765

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=97.05  E-value=0.041  Score=43.87  Aligned_cols=101  Identities=16%  Similarity=0.307  Sum_probs=60.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChH-------------------HH----HHHHHcCCC-EEEeCCCC
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDY-------------------RL----SVAKKLGAD-NIVKVSTN  150 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~-------------------~~----~~~~~~g~~-~~~~~~~~  150 (216)
                      .+.+|+|+|+|++|..++..+...|..++..+|.+.-                   |.    +.+.++... .+..++..
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~  108 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDF  108 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecc
Confidence            4578999999999999999999999888888886621                   11    122233332 22222110


Q ss_pred             cccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCC-EEEEecc
Q 048013          151 LQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGG-KVCLVGM  200 (216)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G-~~v~~g~  200 (216)
                      - + .+.+.++   ....+|+||||+.....-..+.+.+...+ .++..|.
T Consensus       109 i-~-~e~~~~l---l~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gG  154 (268)
T PRK15116        109 I-T-PDNVAEY---MSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGG  154 (268)
T ss_pred             c-C-hhhHHHH---hcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence            0 0 1122222   23469999999998544344555555554 5555543

>PLN00203 glutamyl-tRNA reductase

Probab=97.05  E-value=0.0076  Score=52.55  Aligned_cols=98  Identities=16%  Similarity=0.300  Sum_probs=63.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      .+.+|+|+|+|.+|.++++.+...|+..|++++++.++.+.+ ++++...+...     .+.+ +.+.    -...|+||
T Consensus       265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~-----~~~d-l~~a----l~~aDVVI  334 (519)
T PLN00203        265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYK-----PLDE-MLAC----AAEADVVF  334 (519)
T ss_pred             CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEee-----cHhh-HHHH----HhcCCEEE
Confidence            368899999999999999999999987799999998886654 44542211110     1111 1111    13689999


Q ss_pred             EcCCCHHH--HHHHHHHhhcC----C---EEEEeccCC
Q 048013          174 DCAGFNKT--MSTALSATRAG----G---KVCLVGMGH  202 (216)
Q Consensus       174 ~~~g~~~~--~~~~~~~l~~~----G---~~v~~g~~~  202 (216)
                      .+++.+..  ....++.+.+.    +   .++.++.+.
T Consensus       335 sAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR  372 (519)
T PLN00203        335 TSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPR  372 (519)
T ss_pred             EccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence            99986432  24455544321    2   577888765

>PRK07574 formate dehydrogenase; Provisional

Probab=97.04  E-value=0.0066  Score=50.97  Aligned_cols=89  Identities=19%  Similarity=0.244  Sum_probs=59.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .+++|.|+|.|.+|..+++.++.+|++ |++.+++....+..+.++...   +    .+    +.++.    ...|+|+-
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~~-V~~~dr~~~~~~~~~~~g~~~---~----~~----l~ell----~~aDvV~l  254 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDVK-LHYTDRHRLPEEVEQELGLTY---H----VS----FDSLV----SVCDVVTI  254 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECCCCCchhhHhhcCcee---c----CC----HHHHh----hcCCEEEE
Confidence            567899999999999999999999995 899988754333334444321   1    11    22221    24788887


Q ss_pred             cCCCHHHH-----HHHHHHhhcCCEEEEec
Q 048013          175 CAGFNKTM-----STALSATRAGGKVCLVG  199 (216)
Q Consensus       175 ~~g~~~~~-----~~~~~~l~~~G~~v~~g  199 (216)
                      +.......     ...+..|+++..++.++
T Consensus       255 ~lPlt~~T~~li~~~~l~~mk~ga~lIN~a  284 (385)
T PRK07574        255 HCPLHPETEHLFDADVLSRMKRGSYLVNTA  284 (385)
T ss_pred             cCCCCHHHHHHhCHHHHhcCCCCcEEEECC
Confidence            77742221     45666778887777766

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.04  E-value=0.015  Score=47.99  Aligned_cols=36  Identities=33%  Similarity=0.479  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      ...+|+|+|+|++|..+++.+...|..++.++|.+.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            446799999999999999999999998888898874

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.04  E-value=0.01  Score=44.23  Aligned_cols=94  Identities=17%  Similarity=0.314  Sum_probs=61.2

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      +|.|+|+ |.+|..+++=|+..|.. |+++.|++.|....+..-+   ..  .+--+.. .+.+    .-.|+|+||++.
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGHe-VTAivRn~~K~~~~~~~~i---~q--~Difd~~-~~a~----~l~g~DaVIsA~   70 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGHE-VTAIVRNASKLAARQGVTI---LQ--KDIFDLT-SLAS----DLAGHDAVISAF   70 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCCe-eEEEEeChHhcccccccee---ec--ccccChh-hhHh----hhcCCceEEEec
Confidence            5788896 99999999999999996 9999999988755422111   10  0000111 1111    124899999998


Q ss_pred             CCH---------HHHHHHHHHhhcCC--EEEEeccCC
Q 048013          177 GFN---------KTMSTALSATRAGG--KVCLVGMGH  202 (216)
Q Consensus       177 g~~---------~~~~~~~~~l~~~G--~~v~~g~~~  202 (216)
                      +..         ...+..+..|+..|  |+..+|...
T Consensus        71 ~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAG  107 (211)
T COG2910          71 GAGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAG  107 (211)
T ss_pred             cCCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence            863         12345667777644  888888543

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=97.03  E-value=0.011  Score=46.61  Aligned_cols=79  Identities=30%  Similarity=0.322  Sum_probs=50.6

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc---CCCEEEeCCC-CcccHHHHHHHHHHHcCCCccE
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL---GADNIVKVST-NLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~---g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      ++||+|+ +++|..+++.+...|++ |+.+++++++.+.+ +++   +....+..+- +.++..+.+.++.+.. .++|+
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~-g~id~   79 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGAR-VVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELL-GGIDA   79 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhc-CCCCE
Confidence            6899986 89999999999889995 88889987765433 222   3222222221 2233444444443322 47999


Q ss_pred             EEEcCCC
Q 048013          172 SFDCAGF  178 (216)
Q Consensus       172 vi~~~g~  178 (216)
                      +|.+.|.
T Consensus        80 li~naG~   86 (259)
T PRK08340         80 LVWNAGN   86 (259)
T ss_pred             EEECCCC
Confidence            9999874

>PRK07454 short chain dehydrogenase; Provisional

Probab=97.03  E-value=0.014  Score=45.47  Aligned_cols=83  Identities=23%  Similarity=0.251  Sum_probs=52.5

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----HcCCCE-EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KLGADN-IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .+.++++|.|+ |++|..+++.+...|++ |++++++.++.+.+.    +.+... .+..+- +.++..+.+.++.+. .
T Consensus         4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~   81 (241)
T PRK07454          4 NSMPRALITGASSGIGKATALAFAKAGWD-LALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQ-F   81 (241)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHH-c
Confidence            35678999986 99999999999989994 899999877654432    222222 222221 222333334443322 2


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      .++|+++.++|.
T Consensus        82 ~~id~lv~~ag~   93 (241)
T PRK07454         82 GCPDVLINNAGM   93 (241)
T ss_pred             CCCCEEEECCCc
Confidence            469999999984

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=97.03  E-value=0.034  Score=45.41  Aligned_cols=81  Identities=25%  Similarity=0.366  Sum_probs=51.0

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHH-HHcCC--CE--EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFG-APRIVIVDVDDYRLSVA-KKLGA--DN--IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~-~~~g~--~~--~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      +++++|.|+ +++|..+++.+...| + +|+.+.+++++.+.+ +++..  ..  .+..+- +..+..+.+.++.+ ..+
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~-~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~-~~~   80 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEW-HVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRE-SGR   80 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHH-hCC
Confidence            568999996 899999998888889 7 488888887765543 33431  11  121121 22233344444432 234


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.++|.
T Consensus        81 ~iD~lI~nAG~   91 (314)
T TIGR01289        81 PLDALVCNAAV   91 (314)
T ss_pred             CCCEEEECCCc
Confidence            79999999873

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=97.03  E-value=0.017  Score=45.15  Aligned_cols=102  Identities=25%  Similarity=0.367  Sum_probs=70.9

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHHH----HcCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVAK----KLGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ...++.+|++|+=.|.|+ |.+++-+++..|. .+|+..+..++..+.++    +++....+.+  ...|..+..     
T Consensus        88 ~~~gi~pg~rVlEAGtGS-G~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~--~~~Dv~~~~-----  159 (256)
T COG2519          88 ARLGISPGSRVLEAGTGS-GALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTL--KLGDVREGI-----  159 (256)
T ss_pred             HHcCCCCCCEEEEcccCc-hHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEE--Eeccccccc-----
Confidence            556789999999888765 8888889987765 47999999988776663    3555442211  112322211     


Q ss_pred             HcCCCccEEEEcCC-CHHHHHHHHHHhhcCCEEEEec
Q 048013          164 AMGTGIDVSFDCAG-FNKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       164 ~~~~~~d~vi~~~g-~~~~~~~~~~~l~~~G~~v~~g  199 (216)
                       .+..+|++|--.. ..+.++.+.+.|+|+|+++.+.
T Consensus       160 -~~~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~  195 (256)
T COG2519         160 -DEEDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYS  195 (256)
T ss_pred             -cccccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEc
Confidence             2347988654444 5678899999999999999886

>PRK06482 short chain dehydrogenase; Provisional

Probab=97.03  E-value=0.009  Score=47.59  Aligned_cols=80  Identities=19%  Similarity=0.176  Sum_probs=51.3

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-cCCCE-EEeCCC-CcccHHHHHHHHHHHcCCCccEE
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-LGADN-IVKVST-NLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      +++||+|+ |.+|..+++.+...|++ |++++++.++.+.+++ .+... .+..+- +.+...+.+.++.+. ..++|++
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~id~v   80 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGDR-VAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAA-LGRIDVV   80 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHH-cCCCCEE
Confidence            57999986 99999999988888985 8888898877665543 33221 112211 122233334443322 3478999


Q ss_pred             EEcCCC
Q 048013          173 FDCAGF  178 (216)
Q Consensus       173 i~~~g~  178 (216)
                      |.++|.
T Consensus        81 i~~ag~   86 (276)
T PRK06482         81 VSNAGY   86 (276)
T ss_pred             EECCCC
Confidence            999874

>PRK06172 short chain dehydrogenase; Provisional

Probab=97.03  E-value=0.011  Score=46.37  Aligned_cols=82  Identities=26%  Similarity=0.335  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCCC-cccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVSTN-LQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~~-~~~~~~~~~~~~~~~~~  167 (216)
                      .+++++|.|+ |++|..+++.+...|++ |+.++++.++.+.+    ++.+... .+..+-. .++..+.+.++.+.. .
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~-g   83 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGAK-VVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAY-G   83 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh-C
Confidence            4689999996 89999999988889985 88999987664432    3334322 2222221 222333334433222 4


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.+.|.
T Consensus        84 ~id~li~~ag~   94 (253)
T PRK06172         84 RLDYAFNNAGI   94 (253)
T ss_pred             CCCEEEECCCC
Confidence            68999999874

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.02  E-value=0.019  Score=44.30  Aligned_cols=104  Identities=21%  Similarity=0.350  Sum_probs=70.4

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHc
Q 048013           91 ANIGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        91 ~~~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      ...+..++||=+|.+ +|..++.+|..+. -.+++.++.++++.+.+++    .|....+..-.. .+..+.+.+   ..
T Consensus        55 ~~~~~~k~iLEiGT~-~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~---~~  129 (219)
T COG4122          55 ARLSGPKRILEIGTA-IGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSR---LL  129 (219)
T ss_pred             HHhcCCceEEEeecc-cCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHh---cc
Confidence            345678889988854 3777778888765 2269999999999877754    577653221111 244444443   23


Q ss_pred             CCCccEEEEcCCC---HHHHHHHHHHhhcCCEEEEec
Q 048013          166 GTGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       166 ~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ...||+||=-..-   +..++.++++|+|+|.++.=-
T Consensus       130 ~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DN  166 (219)
T COG4122         130 DGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADN  166 (219)
T ss_pred             CCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEee
Confidence            5689998754442   567899999999999887543

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=97.02  E-value=0.014  Score=45.82  Aligned_cols=35  Identities=29%  Similarity=0.461  Sum_probs=30.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      +.+|+|.|+|++|..+++.+...|..+++.+|.+.
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            47899999999999999999999999888887654

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK07577 short chain dehydrogenase; Provisional

Probab=97.02  E-value=0.018  Score=44.52  Aligned_cols=75  Identities=16%  Similarity=0.332  Sum_probs=48.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCC-CCcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      ++++++|.|+ |++|..+++.+...|++ |+.++++.++     .... ..+..+ .+.+...+.+.++.+.  .++|++
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~-v~~~~r~~~~-----~~~~-~~~~~D~~~~~~~~~~~~~~~~~--~~~d~v   72 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQ-VIGIARSAID-----DFPG-ELFACDLADIEQTAATLAQINEI--HPVDAI   72 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEEeCCccc-----ccCc-eEEEeeCCCHHHHHHHHHHHHHh--CCCcEE
Confidence            3578999996 89999999999989985 8888887654     1111 222221 1223333444444322  368999


Q ss_pred             EEcCCC
Q 048013          173 FDCAGF  178 (216)
Q Consensus       173 i~~~g~  178 (216)
                      |.+.|.
T Consensus        73 i~~ag~   78 (234)
T PRK07577         73 VNNVGI   78 (234)
T ss_pred             EECCCC
Confidence            999884

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=97.01  E-value=0.0088  Score=46.70  Aligned_cols=97  Identities=21%  Similarity=0.342  Sum_probs=66.4

Q ss_pred             CHHHHHHHHHHHHcCCCeEEEEcCChHHH----H-HHHHcCCCEEEeCCCC-cccHHHHHHHHHHHcCCCccEEEEcCCC
Q 048013          105 GPIGLVTMLAARAFGAPRIVIVDVDDYRL----S-VAKKLGADNIVKVSTN-LQDIAEEVEKIQKAMGTGIDVSFDCAGF  178 (216)
Q Consensus       105 g~~G~~~i~~a~~~g~~~vv~~~~~~~~~----~-~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~vi~~~g~  178 (216)
                      +++|.++++.+...|++ |++++++.++.    + ..++.+.. ++..+-. .++..+.+.++.+..++++|+++++++.
T Consensus         6 ~GiG~aia~~l~~~Ga~-V~~~~~~~~~~~~~~~~l~~~~~~~-~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a~~   83 (241)
T PF13561_consen    6 SGIGRAIARALAEEGAN-VILTDRNEEKLADALEELAKEYGAE-VIQCDLSDEESVEALFDEAVERFGGRIDILVNNAGI   83 (241)
T ss_dssp             SHHHHHHHHHHHHTTEE-EEEEESSHHHHHHHHHHHHHHTTSE-EEESCTTSHHHHHHHHHHHHHHHCSSESEEEEEEES
T ss_pred             CChHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHHHHHcCCc-eEeecCcchHHHHHHHHHHHhhcCCCeEEEEecccc
Confidence            69999999999999995 99999998873    3 33446654 4544432 2344444555554444689999987653


Q ss_pred             H-----------------------------HHHHHHHHHhhcCCEEEEeccCCC
Q 048013          179 N-----------------------------KTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       179 ~-----------------------------~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      .                             ...+.+.+.|+++|+++.++....
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~  137 (241)
T PF13561_consen   84 SPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAA  137 (241)
T ss_dssp             CTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGG
T ss_pred             cccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhh
Confidence            1                             134677778889999998875443

...

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.01  E-value=0.034  Score=39.47  Aligned_cols=96  Identities=20%  Similarity=0.286  Sum_probs=58.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChH-------------------HH----HHHHHcCC-CEEEeCCCCc
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDY-------------------RL----SVAKKLGA-DNIVKVSTNL  151 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~-------------------~~----~~~~~~g~-~~~~~~~~~~  151 (216)
                      ..+|+|.|+|++|..++..+...|..++..+|.+.-                   |.    +.++++.+ -.+..+.   
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~---   78 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIP---   78 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEE---
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeee---
Confidence            468999999999999999999999988888876531                   11    22233332 2222221   


Q ss_pred             ccH-HHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEe
Q 048013          152 QDI-AEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       152 ~~~-~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~  198 (216)
                      .++ .+...++.    .++|+||+|+.+...-....+.+...+.-++.
T Consensus        79 ~~~~~~~~~~~~----~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~  122 (135)
T PF00899_consen   79 EKIDEENIEELL----KDYDIVIDCVDSLAARLLLNEICREYGIPFID  122 (135)
T ss_dssp             SHCSHHHHHHHH----HTSSEEEEESSSHHHHHHHHHHHHHTT-EEEE
T ss_pred             cccccccccccc----cCCCEEEEecCCHHHHHHHHHHHHHcCCCEEE
Confidence            122 12233321    36899999999966555566667666644433

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=97.01  E-value=0.0062  Score=48.71  Aligned_cols=84  Identities=24%  Similarity=0.275  Sum_probs=55.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCC--EE--EeCC-CCcccHHHHHHHHHH
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGAD--NI--VKVS-TNLQDIAEEVEKIQK  163 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~--~~--~~~~-~~~~~~~~~~~~~~~  163 (216)
                      -.++.+||.|+ .++|.+++..+...|++ |+++++++++.+....    .+..  .+  +..+ ...++..+.+....+
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga~-v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~   84 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGAK-VVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE   84 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence            46789999986 79999999999999995 8999999887654422    2221  11  1111 122334444444333


Q ss_pred             HcCCCccEEEEcCCC
Q 048013          164 AMGTGIDVSFDCAGF  178 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~  178 (216)
                      ...+++|+.+++.|.
T Consensus        85 ~~~GkidiLvnnag~   99 (270)
T KOG0725|consen   85 KFFGKIDILVNNAGA   99 (270)
T ss_pred             HhCCCCCEEEEcCCc
Confidence            335689999999885

>PRK06483 dihydromonapterin reductase; Provisional

Probab=97.00  E-value=0.012  Score=45.60  Aligned_cols=80  Identities=19%  Similarity=0.326  Sum_probs=51.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHH-HHHHHHcCCCEEEeCC-CCcccHHHHHHHHHHHcCCCccEE
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYR-LSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~-~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      ++++||.|+ |++|..+++.+...|++ |++++++.+. .+.++..+... +..+ .+.++..+.+.++.+.. .++|++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~~~~~~~~~~-~~id~l   78 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQP-VIVSYRTHYPAIDGLRQAGAQC-IQADFSTNAGIMAFIDELKQHT-DGLRAI   78 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCchhHHHHHHHcCCEE-EEcCCCCHHHHHHHHHHHHhhC-CCccEE
Confidence            468999996 89999999999889995 8888887644 33444455332 2222 12233334444443222 369999


Q ss_pred             EEcCCC
Q 048013          173 FDCAGF  178 (216)
Q Consensus       173 i~~~g~  178 (216)
                      +.++|.
T Consensus        79 v~~ag~   84 (236)
T PRK06483         79 IHNASD   84 (236)
T ss_pred             EECCcc
Confidence            999874

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=96.99  E-value=0.016  Score=46.06  Aligned_cols=106  Identities=18%  Similarity=0.201  Sum_probs=67.3

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHHHHc-C------CCEEEeCCCCcccHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVAKKL-G------ADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~~~~-g------~~~~~~~~~~~~~~~~~~~~  160 (216)
                      +...++++++||.+|+|. |..+..+++..+. ..|+++|.+++-++.+++. .      ...+.....   +.    .+
T Consensus        67 ~~~~~~~~~~VLDlGcGt-G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~---d~----~~  138 (261)
T PLN02233         67 SWSGAKMGDRVLDLCCGS-GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEG---DA----TD  138 (261)
T ss_pred             HHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEc---cc----cc
Confidence            445678899999999875 6666777776653 2699999999887776532 1      111111101   11    11


Q ss_pred             HHHHcCCCccEEEEcCC-----C-HHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          161 IQKAMGTGIDVSFDCAG-----F-NKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g-----~-~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      +. .....||.|+...+     + ...++++.+.|+|+|++++.-+..+
T Consensus       139 lp-~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~  186 (261)
T PLN02233        139 LP-FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS  186 (261)
T ss_pred             CC-CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence            10 12346899876433     2 3567899999999999988765443

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.99  E-value=0.062  Score=41.91  Aligned_cols=107  Identities=16%  Similarity=0.187  Sum_probs=62.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChHHH----HHHHHcCCCE-EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV-DDYRL----SVAKKLGADN-IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~-~~~~~----~~~~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||.|+ |.+|..+++.+...|++ ++...+ +.+..    ..+++.+... .+..+- +..+..+.+.++.+.. 
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-   82 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRLAKEGSL-VVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRY-   82 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHc-
Confidence            3578999996 89999999988889996 555443 32222    2223333322 222221 2222333344443222 


Q ss_pred             CCccEEEEcCCC----------HH---------------HHHHHHHHhhcCCEEEEeccCCC
Q 048013          167 TGIDVSFDCAGF----------NK---------------TMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       167 ~~~d~vi~~~g~----------~~---------------~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      .++|++|.++|.          .+               ..+.+.+.++..|+++.++....
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~  144 (252)
T PRK06077         83 GVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAG  144 (252)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhc
Confidence            479999999983          11               13455666677889998886443

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.99  E-value=0.011  Score=46.76  Aligned_cols=82  Identities=22%  Similarity=0.292  Sum_probs=49.9

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCC-CCcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS---GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVS-TNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga---g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~-~~~~~~~~~~~~~~~~~~  166 (216)
                      ++++++|.|+   +++|.++++.+...|++ |+...+++...+.+++    .+....+..| .+.++..+.+.++.+.. 
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-   82 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGAE-LAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHW-   82 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCCE-EEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHh-
Confidence            5788999983   48999999999889995 7776655432233322    3432222222 22233444444444333 


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      .++|++++++|.
T Consensus        83 g~iD~lVnnAG~   94 (261)
T PRK08690         83 DGLDGLVHSIGF   94 (261)
T ss_pred             CCCcEEEECCcc
Confidence            479999999874

>PRK05717 oxidoreductase; Validated

Probab=96.99  E-value=0.013  Score=46.07  Aligned_cols=82  Identities=24%  Similarity=0.270  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHH-HHHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSV-AKKLGADN-IVKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~-~~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .+++++|+|+ |++|..++..+...|++ |+.++++.++.+. .++++... .+..+- +..+..+.+.++.+.. +++|
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-g~id   86 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGWQ-VVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQF-GRLD   86 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHh-CCCC
Confidence            5688999996 99999999999889985 8888887665443 34444322 222221 1222333344443322 3699


Q ss_pred             EEEEcCCC
Q 048013          171 VSFDCAGF  178 (216)
Q Consensus       171 ~vi~~~g~  178 (216)
                      ++|.+.|.
T Consensus        87 ~li~~ag~   94 (255)
T PRK05717         87 ALVCNAAI   94 (255)
T ss_pred             EEEECCCc
Confidence            99998884

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=96.98  E-value=0.052  Score=42.79  Aligned_cols=82  Identities=23%  Similarity=0.236  Sum_probs=48.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC-hHHHHH----HHHcCCCE-EEeCC-CCcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVD-DYRLSV----AKKLGADN-IVKVS-TNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~-~~~~~~----~~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~  166 (216)
                      .+++++|+|+ |++|..+++.+...|++ ++++.++ ++..+.    ++..+... .+..+ .+.++..+.+.++.+.. 
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~~-vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~-   83 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKAK-VVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEF-   83 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHc-
Confidence            5789999986 89999999999999985 6666553 333222    22233321 12111 12223333333433222 


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      .++|+++.+.|.
T Consensus        84 g~id~lv~~ag~   95 (261)
T PRK08936         84 GTLDVMINNAGI   95 (261)
T ss_pred             CCCCEEEECCCC
Confidence            479999999884

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.97  E-value=0.016  Score=48.31  Aligned_cols=36  Identities=28%  Similarity=0.475  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      ...+|+|+|+|++|..+++.+...|..++..+|.+.
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            447899999999999999999999999999988764

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=96.97  E-value=0.012  Score=46.84  Aligned_cols=81  Identities=19%  Similarity=0.247  Sum_probs=51.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH---cCCCE-EEeCCCCc-ccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK---LGADN-IVKVSTNL-QDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~---~g~~~-~~~~~~~~-~~~~~~~~~~~~~~~~  167 (216)
                      .+++++|.|+ |++|..+++.+...|++ |++++++.++.+.+ ++   .+... .+..+-.+ ++..+.+.++.+. -+
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-~g   86 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGAK-VAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILED-FG   86 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH-cC
Confidence            4688999986 89999999999999995 88888887655433 22   23221 22222211 2233333333322 24


Q ss_pred             CccEEEEcCC
Q 048013          168 GIDVSFDCAG  177 (216)
Q Consensus       168 ~~d~vi~~~g  177 (216)
                      ++|++|.++|
T Consensus        87 ~id~li~~ag   96 (278)
T PRK08277         87 PCDILINGAG   96 (278)
T ss_pred             CCCEEEECCC
Confidence            7999999987

>PRK06138 short chain dehydrogenase; Provisional

Probab=96.97  E-value=0.013  Score=45.79  Aligned_cols=82  Identities=20%  Similarity=0.232  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc--CCC-EEEeCCCC-cccHHHHHHHHHHHcCCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL--GAD-NIVKVSTN-LQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~--g~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~  168 (216)
                      ++++++|+|+ |++|..+++.+...|++ |+.+.++.++.+.. +++  +.. ..+..+-. .+...+.+.++.+.. .+
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~-~~   81 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGAR-VVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARW-GR   81 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCe-EEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc-CC
Confidence            4678999996 99999999988888985 88888887655433 222  222 12222222 223333444443322 47


Q ss_pred             ccEEEEcCCC
Q 048013          169 IDVSFDCAGF  178 (216)
Q Consensus       169 ~d~vi~~~g~  178 (216)
                      +|++|.+.+.
T Consensus        82 id~vi~~ag~   91 (252)
T PRK06138         82 LDVLVNNAGF   91 (252)
T ss_pred             CCEEEECCCC
Confidence            9999999984

>PLN02928 oxidoreductase family protein

Probab=96.97  E-value=0.0099  Score=49.32  Aligned_cols=95  Identities=20%  Similarity=0.286  Sum_probs=59.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCC-----CEEEeCCCCcccHHHHHHHHHHHcCCCc
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGA-----DNIVKVSTNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      .|+++.|+|.|.+|..+++.++.+|++ |++.+++..+.. ...++.     ...........+    +.++.    ...
T Consensus       158 ~gktvGIiG~G~IG~~vA~~l~afG~~-V~~~dr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----L~ell----~~a  227 (347)
T PLN02928        158 FGKTVFILGYGAIGIELAKRLRPFGVK-LLATRRSWTSEP-EDGLLIPNGDVDDLVDEKGGHED----IYEFA----GEA  227 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCCCE-EEEECCCCChhh-hhhhccccccccccccccCcccC----HHHHH----hhC
Confidence            578999999999999999999999995 999987633211 111110     000000000112    22322    247


Q ss_pred             cEEEEcCCCHHH-----HHHHHHHhhcCCEEEEec
Q 048013          170 DVSFDCAGFNKT-----MSTALSATRAGGKVCLVG  199 (216)
Q Consensus       170 d~vi~~~g~~~~-----~~~~~~~l~~~G~~v~~g  199 (216)
                      |+|+.++.....     -...+..|+++..+|.+|
T Consensus       228 DiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINva  262 (347)
T PLN02928        228 DIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIA  262 (347)
T ss_pred             CEEEECCCCChHhhcccCHHHHhcCCCCeEEEECC
Confidence            999988874221     156778889998888886

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=96.96  E-value=0.035  Score=44.29  Aligned_cols=100  Identities=21%  Similarity=0.252  Sum_probs=62.2

Q ss_pred             HcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHH----HHcCCCEEEeCCCCcccHHHHHHHHHHH
Q 048013           90 RANIGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVA----KKLGADNIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        90 ~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      ...++++++||-.|+|+ |..++.++..++ ...|+++|.++++.+.+    +.++...+..+..   |..+ +..    
T Consensus        66 ~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~---D~~~-~~~----  136 (264)
T TIGR00446        66 ALEPDPPERVLDMAAAP-GGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNF---DGRV-FGA----  136 (264)
T ss_pred             HhCCCCcCEEEEECCCc-hHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecC---CHHH-hhh----
Confidence            34578999999998765 545555565553 22699999999987665    4466654333222   2211 111    


Q ss_pred             cCCCccEEEE---cCCC-------------------------HHHHHHHHHHhhcCCEEEEe
Q 048013          165 MGTGIDVSFD---CAGF-------------------------NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       165 ~~~~~d~vi~---~~g~-------------------------~~~~~~~~~~l~~~G~~v~~  198 (216)
                      ....||.|+-   |+|.                         .+.+..+++.|+|+|+++..
T Consensus       137 ~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs  198 (264)
T TIGR00446       137 AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS  198 (264)
T ss_pred             hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            1235999875   3332                         12567788899999988744

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.96  E-value=0.018  Score=42.23  Aligned_cols=84  Identities=13%  Similarity=0.072  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .+++|+|+|+|.+|..-++.+...|++ |++++  ++..+.+++++.-....     +.+    ++   ..-.++|+||-
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~-V~VIs--p~~~~~l~~l~~i~~~~-----~~~----~~---~dl~~a~lVia   76 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAF-VTVVS--PEICKEMKELPYITWKQ-----KTF----SN---DDIKDAHLIYA   76 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEc--CccCHHHHhccCcEEEe-----ccc----Ch---hcCCCceEEEE
Confidence            578999999999999999988889996 66664  33333344444222111     111    11   11246899999


Q ss_pred             cCCCHHHHHHHHHHhhcCC
Q 048013          175 CAGFNKTMSTALSATRAGG  193 (216)
Q Consensus       175 ~~g~~~~~~~~~~~l~~~G  193 (216)
                      ++++++.-.......+..+
T Consensus        77 aT~d~e~N~~i~~~a~~~~   95 (157)
T PRK06719         77 ATNQHAVNMMVKQAAHDFQ   95 (157)
T ss_pred             CCCCHHHHHHHHHHHHHCC
Confidence            9999665445555555544

>PRK07890 short chain dehydrogenase; Provisional

Probab=96.96  E-value=0.013  Score=46.02  Aligned_cols=82  Identities=18%  Similarity=0.161  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-Hc---CCC-EEEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KL---GAD-NIVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~---g~~-~~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      ++++++|.|+ |++|..+++.+...|++ |+++++++++.+.+. ++   +.. ..+..+- +.++....+.++.+.. .
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g   81 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGAD-VVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERF-G   81 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHc-C
Confidence            5688999996 89999999999999995 889988887654432 22   322 1222221 2223333344433222 4


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      .+|++|.+.|.
T Consensus        82 ~~d~vi~~ag~   92 (258)
T PRK07890         82 RVDALVNNAFR   92 (258)
T ss_pred             CccEEEECCcc
Confidence            68999999874

>PRK08317 hypothetical protein; Provisional

Probab=96.96  E-value=0.024  Score=43.88  Aligned_cols=103  Identities=24%  Similarity=0.322  Sum_probs=67.4

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHHHc--C-CCEEEeCCCCcccHHHHHHHHHH
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAKKL--G-ADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~~~--g-~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ++...+.++++||.+|+|. |..+..++...+ ...++++|.+++..+.+++.  . ...+.....   +.    .+.. 
T Consensus        12 ~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~---d~----~~~~-   82 (241)
T PRK08317         12 FELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRG---DA----DGLP-   82 (241)
T ss_pred             HHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEec---cc----ccCC-
Confidence            4567788999999999876 778888888763 23699999999887777654  1 111111101   11    0000 


Q ss_pred             HcCCCccEEEEcC-----CC-HHHHHHHHHHhhcCCEEEEec
Q 048013          164 AMGTGIDVSFDCA-----GF-NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       164 ~~~~~~d~vi~~~-----g~-~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      .....+|+|+..-     .+ ...++.+.+.|+|+|.+++..
T Consensus        83 ~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         83 FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             CCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence            1234689887632     22 346788999999999998765

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=96.95  E-value=0.048  Score=45.67  Aligned_cols=83  Identities=18%  Similarity=0.126  Sum_probs=49.9

Q ss_pred             CCCCEEEEEcC-CHHHHH--HHHHHHHcCCCeEEEEcCCh---H-------------HHHHHHHcCCCE-EEeCC-CCcc
Q 048013           94 GPETNVLIMGS-GPIGLV--TMLAARAFGAPRIVIVDVDD---Y-------------RLSVAKKLGADN-IVKVS-TNLQ  152 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~--~i~~a~~~g~~~vv~~~~~~---~-------------~~~~~~~~g~~~-~~~~~-~~~~  152 (216)
                      ..++++||+|+ +++|++  +++.+ ..|++ +++++...   +             -.+.+++.|... .+..+ .+++
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~-Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E  116 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-GAGAD-TLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDE  116 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-HcCCe-EEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence            44689999995 899999  56666 78996 66665322   1             122445566542 22222 2223


Q ss_pred             cHHHHHHHHHHHcCCCccEEEEcCCCH
Q 048013          153 DIAEEVEKIQKAMGTGIDVSFDCAGFN  179 (216)
Q Consensus       153 ~~~~~~~~~~~~~~~~~d~vi~~~g~~  179 (216)
                      ...+.+.++.+.. +++|+++.+++.+
T Consensus       117 ~v~~lie~I~e~~-G~IDiLVnSaA~~  142 (398)
T PRK13656        117 IKQKVIELIKQDL-GQVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHHHHHhc-CCCCEEEECCccC
Confidence            3444455554434 4699999988863

>PRK05875 short chain dehydrogenase; Provisional

Probab=96.95  E-value=0.014  Score=46.37  Aligned_cols=81  Identities=20%  Similarity=0.288  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc---C--CC-EEEeCCC-CcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL---G--AD-NIVKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~---g--~~-~~~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      +++++||.|+ |++|..+++.+...|++ |+.++++.++.+.. +++   +  .. ..+..+- +.++..+.+.+..+. 
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-   83 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGAA-VMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAW-   83 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHH-
Confidence            4689999996 89999999999999995 88888887664432 222   1  11 1221221 122233333333322 


Q ss_pred             CCCccEEEEcCC
Q 048013          166 GTGIDVSFDCAG  177 (216)
Q Consensus       166 ~~~~d~vi~~~g  177 (216)
                      ..++|++|.++|
T Consensus        84 ~~~~d~li~~ag   95 (276)
T PRK05875         84 HGRLHGVVHCAG   95 (276)
T ss_pred             cCCCCEEEECCC
Confidence            347899999987

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.95  E-value=0.026  Score=42.72  Aligned_cols=100  Identities=25%  Similarity=0.265  Sum_probs=57.5

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc----CCCEEEeCCCCcccHHHHHHHHHHHcCC
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL----GADNIVKVSTNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (216)
                      .++.+++|+|+ |++|..++..+...|. +|++++++.++.+.+ +++    +... ...+.  .+.. .+.+..    .
T Consensus        26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~~~l~~~~~~~~-~~~~~--~~~~-~~~~~~----~   96 (194)
T cd01078          26 LKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAADSLRARFGEGV-GAVET--SDDA-ARAAAI----K   96 (194)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhhcCCcE-EEeeC--CCHH-HHHHHH----h
Confidence            35788999996 9999998888888887 588888988776544 223    2221 11111  1211 122221    3


Q ss_pred             CccEEEEcCCCHHHHHHHHH-HhhcCCEEEEeccCC
Q 048013          168 GIDVSFDCAGFNKTMSTALS-ATRAGGKVCLVGMGH  202 (216)
Q Consensus       168 ~~d~vi~~~g~~~~~~~~~~-~l~~~G~~v~~g~~~  202 (216)
                      ++|+||.+++.......... ..+++-.++.+..+.
T Consensus        97 ~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~  132 (194)
T cd01078          97 GADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVP  132 (194)
T ss_pred             cCCEEEECCCCCceechhhhcccCceeEEEEccCCC
Confidence            68999998886332111111 223333466665443

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=96.95  E-value=0.045  Score=42.52  Aligned_cols=80  Identities=14%  Similarity=0.185  Sum_probs=47.9

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEE-EcCChHHHHHH----HHcCCC-EEEeCCCC-cccHHHHHHHHHHHcCCC
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVI-VDVDDYRLSVA----KKLGAD-NIVKVSTN-LQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~-~~~~~~~~~~~----~~~g~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~  168 (216)
                      +++||+|+ |++|..+++.+...|++ |++ ..++.++.+..    +..+.. ..+..+-. .+...+.+.++.+ ...+
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~-~~~~   79 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGYT-VAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQ-HDEP   79 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHH-hCCC
Confidence            47899996 99999999999889986 554 45665544322    223322 12222222 2233333444432 2457


Q ss_pred             ccEEEEcCCC
Q 048013          169 IDVSFDCAGF  178 (216)
Q Consensus       169 ~d~vi~~~g~  178 (216)
                      +|++|.++|.
T Consensus        80 id~vi~~ag~   89 (247)
T PRK09730         80 LAALVNNAGI   89 (247)
T ss_pred             CCEEEECCCC
Confidence            9999999985

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.95  E-value=0.0093  Score=47.70  Aligned_cols=97  Identities=12%  Similarity=0.174  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCE-EEeCCCCcccHHHHHHHHHHHcCCCcc
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADN-IVKVSTNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      ..++++++|+|+|++|.+++..+...|+ .+++++++.++.+.+ +++.... ....     ..    .+.   ....+|
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~la~~~~~~~~~~~~-----~~----~~~---~~~~~D  180 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEELAERFQRYGEIQAF-----SM----DEL---PLHRVD  180 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhcCceEEe-----ch----hhh---cccCcc
Confidence            3457899999999999999998888898 588889988775543 4443211 1111     01    011   123589


Q ss_pred             EEEEcCCCH---HH--HHHHHHHhhcCCEEEEeccCC
Q 048013          171 VSFDCAGFN---KT--MSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       171 ~vi~~~g~~---~~--~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      ++|++++..   ..  .......++++..++.+...+
T Consensus       181 ivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p  217 (270)
T TIGR00507       181 LIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNP  217 (270)
T ss_pred             EEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCC
Confidence            999999862   11  011234577777888876544

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=96.95  E-value=0.015  Score=45.41  Aligned_cols=81  Identities=19%  Similarity=0.262  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----HcCCC-EEEeCCCC-cccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KLGAD-NIVKVSTN-LQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~g~~-~~~~~~~~-~~~~~~~~~~~~~~~~~  167 (216)
                      +++++||+|+ |.+|..+++.+...|++ |+.++++.++.+.+.    +.+.. ..+..+-. .+...+.+.++.+. -.
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~   79 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAK-VAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQA-LG   79 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH-cC
Confidence            4688999996 89999999999989995 888888876654432    22322 22222221 22233334444322 24


Q ss_pred             CccEEEEcCC
Q 048013          168 GIDVSFDCAG  177 (216)
Q Consensus       168 ~~d~vi~~~g  177 (216)
                      ++|++|.+++
T Consensus        80 ~~d~vi~~ag   89 (250)
T TIGR03206        80 PVDVLVNNAG   89 (250)
T ss_pred             CCCEEEECCC
Confidence            7899999997

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.94  E-value=0.0069  Score=52.61  Aligned_cols=73  Identities=25%  Similarity=0.409  Sum_probs=52.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      +.++++|+|+|.|.+|++++++++..|++ |++.|.+....+.++++|.... .. .+   .   ...+     ..+|+|
T Consensus         9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~~-v~~~D~~~~~~~~l~~~g~~~~-~~-~~---~---~~~l-----~~~D~V   74 (488)
T PRK03369          9 LLPGAPVLVAGAGVTGRAVLAALTRFGAR-PTVCDDDPDALRPHAERGVATV-ST-SD---A---VQQI-----ADYALV   74 (488)
T ss_pred             ccCCCeEEEEcCCHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHhCCCEEE-cC-cc---h---HhHh-----hcCCEE
Confidence            45788999999999999999999999995 8889977666666677776432 21 11   1   1111     247999


Q ss_pred             EEcCCCH
Q 048013          173 FDCAGFN  179 (216)
Q Consensus       173 i~~~g~~  179 (216)
                      +.+.|-+
T Consensus        75 V~SpGi~   81 (488)
T PRK03369         75 VTSPGFR   81 (488)
T ss_pred             EECCCCC
Confidence            9998863

>PRK03612 spermidine synthase; Provisional

Probab=96.94  E-value=0.012  Score=51.64  Aligned_cols=98  Identities=15%  Similarity=0.135  Sum_probs=63.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcC-C----------CEEEeCCCCcccHHHHHHHHH
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLG-A----------DNIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g-~----------~~~~~~~~~~~~~~~~~~~~~  162 (216)
                      +++++||++|+|. |..+..+++.....+++.++.+++-.+.+++.. .          ..+..   ...|..+.+++  
T Consensus       296 ~~~~rVL~IG~G~-G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~v---i~~Da~~~l~~--  369 (521)
T PRK03612        296 ARPRRVLVLGGGD-GLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTV---VNDDAFNWLRK--  369 (521)
T ss_pred             CCCCeEEEEcCCc-cHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEE---EEChHHHHHHh--
Confidence            5678999998764 556666666544357999999999988887621 1          11111   11233333322  


Q ss_pred             HHcCCCccEEEEcCCCH-----------HHHHHHHHHhhcCCEEEEec
Q 048013          163 KAMGTGIDVSFDCAGFN-----------KTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~~-----------~~~~~~~~~l~~~G~~v~~g  199 (216)
                        ..+.+|+|+.....+           +.++.+.+.|+|+|+++.-.
T Consensus       370 --~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        370 --LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             --CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence              346899988765431           35678889999999998654

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=96.94  E-value=0.011  Score=46.42  Aligned_cols=82  Identities=17%  Similarity=0.253  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChH--HHHHHHHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCCCc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDY--RLSVAKKLGADN-IVKVST-NLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~--~~~~~~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~  169 (216)
                      .+++++|.|+ |++|.++++.+...|++ |+.+++++.  ..+.+++.+... .+..+- +.++..+.+.++.+.. .++
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~~-vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-~~~   86 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGCD-IVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEF-GHI   86 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh-CCC
Confidence            4689999996 89999999999999995 777766532  223334444321 122221 2233444455544333 479


Q ss_pred             cEEEEcCCC
Q 048013          170 DVSFDCAGF  178 (216)
Q Consensus       170 d~vi~~~g~  178 (216)
                      |++|+++|.
T Consensus        87 D~li~~Ag~   95 (253)
T PRK08993         87 DILVNNAGL   95 (253)
T ss_pred             CEEEECCCC
Confidence            999999984

>PRK08226 short chain dehydrogenase; Provisional

Probab=96.94  E-value=0.016  Score=45.79  Aligned_cols=82  Identities=20%  Similarity=0.278  Sum_probs=51.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH---cCCCE-EEeCCC-CcccHHHHHHHHHHHcCCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK---LGADN-IVKVST-NLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~---~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~  168 (216)
                      ++++++|+|+ |++|..+++.+...|++ |+.++++++..+..++   .+... .+..+- +.++..+.+.++.+. ..+
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~~-Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-~~~   82 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGAN-LILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEK-EGR   82 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHH-cCC
Confidence            4688999986 89999999999999995 8888888754443333   23221 122111 122333334444322 346


Q ss_pred             ccEEEEcCCC
Q 048013          169 IDVSFDCAGF  178 (216)
Q Consensus       169 ~d~vi~~~g~  178 (216)
                      +|++|.+.|.
T Consensus        83 id~vi~~ag~   92 (263)
T PRK08226         83 IDILVNNAGV   92 (263)
T ss_pred             CCEEEECCCc
Confidence            9999999883

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.93  E-value=0.023  Score=44.84  Aligned_cols=35  Identities=29%  Similarity=0.449  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      ...+|+|+|+|++|..+++.+...|..++.++|.+
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            45789999999999999999999999888888655

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.93  E-value=0.015  Score=39.34  Aligned_cols=91  Identities=16%  Similarity=0.246  Sum_probs=60.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .+++|||+|+|.+|..-++.+...|++ |++++.+.   +..+  +.-....     +.+.    +    .-.++|+||-
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~-v~vis~~~---~~~~--~~i~~~~-----~~~~----~----~l~~~~lV~~   66 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAK-VTVISPEI---EFSE--GLIQLIR-----REFE----E----DLDGADLVFA   66 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBE-EEEEESSE---HHHH--TSCEEEE-----SS-G----G----GCTTESEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECCch---hhhh--hHHHHHh-----hhHH----H----HHhhheEEEe
Confidence            578999999999999999999999995 77777664   2222  2211111     1111    0    1246999999


Q ss_pred             cCCCHHHHHHHHHHhhcCCEEEEeccCCCC
Q 048013          175 CAGFNKTMSTALSATRAGGKVCLVGMGHRE  204 (216)
Q Consensus       175 ~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~  204 (216)
                      +++++..-+...+.++..|.++.+.-.++.
T Consensus        67 at~d~~~n~~i~~~a~~~~i~vn~~D~p~~   96 (103)
T PF13241_consen   67 ATDDPELNEAIYADARARGILVNVVDDPEL   96 (103)
T ss_dssp             -SS-HHHHHHHHHHHHHTTSEEEETT-CCC
T ss_pred             cCCCHHHHHHHHHHHhhCCEEEEECCCcCC
Confidence            999977777888888889999888744443

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.93  E-value=0.022  Score=43.52  Aligned_cols=90  Identities=13%  Similarity=0.136  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh-HHH-HHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD-YRL-SVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~-~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .+++|||+|+|.+|...++.+...|++ |++++.+. +.+ +.+.+ +. ....  .  ..+.+  .     .-.++|+|
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~-V~VIs~~~~~~l~~l~~~-~~-i~~~--~--~~~~~--~-----~l~~adlV   74 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAH-IVVISPELTENLVKLVEE-GK-IRWK--Q--KEFEP--S-----DIVDAFLV   74 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEcCCCCHHHHHHHhC-CC-EEEE--e--cCCCh--h-----hcCCceEE
Confidence            578999999999999999988889985 77776542 122 22222 21 1111  1  11110  0     11368999


Q ss_pred             EEcCCCHHHHHHHHHHhhcCCEEEEec
Q 048013          173 FDCAGFNKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       173 i~~~g~~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      |-++++++.-......++. +.++.+.
T Consensus        75 iaaT~d~elN~~i~~~a~~-~~lvn~~  100 (202)
T PRK06718         75 IAATNDPRVNEQVKEDLPE-NALFNVI  100 (202)
T ss_pred             EEcCCCHHHHHHHHHHHHh-CCcEEEC
Confidence            9999996665555555544 4555554

>PRK07074 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.014  Score=45.87  Aligned_cols=81  Identities=22%  Similarity=0.267  Sum_probs=51.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCC--EEEeCCCCc-ccHHHHHHHHHHHcCCCcc
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGAD--NIVKVSTNL-QDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~d  170 (216)
                      +++++|+|+ |++|..++..+...|++ |+.++++.++.+.+ +++...  ..+..+-.+ +...+.+.++.+.. +++|
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~~d   79 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDR-VLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAER-GPVD   79 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc-CCCC
Confidence            468999996 89999999988888985 88888887766543 333211  122222222 22223344433222 3699


Q ss_pred             EEEEcCCC
Q 048013          171 VSFDCAGF  178 (216)
Q Consensus       171 ~vi~~~g~  178 (216)
                      +++.+.|.
T Consensus        80 ~vi~~ag~   87 (257)
T PRK07074         80 VLVANAGA   87 (257)
T ss_pred             EEEECCCC
Confidence            99999974

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.93  E-value=0.017  Score=43.09  Aligned_cols=33  Identities=27%  Similarity=0.348  Sum_probs=29.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      +|+|+|+|++|..+++.+...|..++..+|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            478999999999999999999998899998775

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=96.93  E-value=0.02  Score=43.76  Aligned_cols=99  Identities=16%  Similarity=0.135  Sum_probs=63.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      ++.+||-+|+|. |..+..+++.....+++++|.+++..+.+++    .+...+..+.   .++.+.+...  .....+|
T Consensus        40 ~~~~VLDiGcGt-G~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~---~d~~~~l~~~--~~~~~~D  113 (202)
T PRK00121         40 DAPIHLEIGFGK-GEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLC---GDAVEVLLDM--FPDGSLD  113 (202)
T ss_pred             CCCeEEEEccCC-CHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEe---cCHHHHHHHH--cCccccc
Confidence            678899999875 7777777776543369999999988776643    3433322211   2331222211  1244689


Q ss_pred             EEEEcCCC--------------HHHHHHHHHHhhcCCEEEEec
Q 048013          171 VSFDCAGF--------------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       171 ~vi~~~g~--------------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      .++-....              ...++.+.+.|+|+|.+++..
T Consensus       114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~  156 (202)
T PRK00121        114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT  156 (202)
T ss_pred             eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence            98864332              356788999999999998764

>PLN02476 O-methyltransferase

Probab=96.92  E-value=0.021  Score=45.70  Aligned_cols=105  Identities=21%  Similarity=0.244  Sum_probs=68.5

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChHHHHHH----HHcCCCEEEeCCCCcccHHHHHHHHHHHc
Q 048013           91 ANIGPETNVLIMGSGPIGLVTMLAARAFGAP-RIVIVDVDDYRLSVA----KKLGADNIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        91 ~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~-~vv~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      .+..+.++||-+|.+ +|..++.+++.++.. +++.++.+++..+.+    ++.|...-+.+  ...+..+.+.++....
T Consensus       114 ~~~~~ak~VLEIGT~-tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~l--i~GdA~e~L~~l~~~~  190 (278)
T PLN02476        114 VQILGAERCIEVGVY-TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNV--KHGLAAESLKSMIQNG  190 (278)
T ss_pred             HHhcCCCeEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE--EEcCHHHHHHHHHhcc
Confidence            445678999999864 266667777766422 599999999887766    44566532221  1245555555542111


Q ss_pred             -CCCccEEEEcCCC---HHHHHHHHHHhhcCCEEEEe
Q 048013          166 -GTGIDVSFDCAGF---NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       166 -~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~  198 (216)
                       ...||.||--...   ...++.+++.|+++|.++.=
T Consensus       191 ~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        191 EGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence             3579998865554   34668889999999998744

>PRK07035 short chain dehydrogenase; Provisional

Probab=96.92  E-value=0.016  Score=45.48  Aligned_cols=81  Identities=14%  Similarity=0.186  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH---cCCC-EEEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK---LGAD-NIVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~---~g~~-~~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .+++++|.|+ |++|..+++.+...|+ +|+.++++.++.+.+ ++   .+.. ..+..+- +.++..+.+.++.+.. .
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~   84 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERH-G   84 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc-C
Confidence            4578999996 8999999999999999 488999887665433 22   2322 1222211 2223333444443333 3


Q ss_pred             CccEEEEcCC
Q 048013          168 GIDVSFDCAG  177 (216)
Q Consensus       168 ~~d~vi~~~g  177 (216)
                      .+|+++.+.+
T Consensus        85 ~id~li~~ag   94 (252)
T PRK07035         85 RLDILVNNAA   94 (252)
T ss_pred             CCCEEEECCC
Confidence            6999999887

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.91  E-value=0.025  Score=44.13  Aligned_cols=92  Identities=15%  Similarity=0.265  Sum_probs=57.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChH-------------------H----HHHHHHcCCCE-EEeCCCCc
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDY-------------------R----LSVAKKLGADN-IVKVSTNL  151 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~-------------------~----~~~~~~~g~~~-~~~~~~~~  151 (216)
                      ..+|+|+|+|++|..++..+...|..+++.+|.+.-                   |    .+.++++.... +..++   
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~---   87 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE---   87 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee---
Confidence            467999999999999999999999988988886531                   1    11223333322 21111   


Q ss_pred             ccHH-HHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCC
Q 048013          152 QDIA-EEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGG  193 (216)
Q Consensus       152 ~~~~-~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G  193 (216)
                      ..+. +...++   ....+|+|+||+.+...-..+.+.+...+
T Consensus        88 ~~i~~~~~~~l---~~~~~D~VvdaiD~~~~k~~L~~~c~~~~  127 (231)
T cd00755          88 EFLTPDNSEDL---LGGDPDFVVDAIDSIRAKVALIAYCRKRK  127 (231)
T ss_pred             eecCHhHHHHH---hcCCCCEEEEcCCCHHHHHHHHHHHHHhC
Confidence            1111 112222   23469999999998655445566666555

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.91  E-value=0.043  Score=43.29  Aligned_cols=104  Identities=19%  Similarity=0.343  Sum_probs=63.2

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCCh--HHHHH-HHHcCCC-EEEeCC-CCcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS---GPIGLVTMLAARAFGAPRIVIVDVDD--YRLSV-AKKLGAD-NIVKVS-TNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga---g~~G~~~i~~a~~~g~~~vv~~~~~~--~~~~~-~~~~g~~-~~~~~~-~~~~~~~~~~~~~~~~~~  166 (216)
                      .+++++|+|+   +++|.++++.+...|++ |+.++++.  +..+. .++++.. ..+..| .+.++..+.+.++.+.. 
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~-v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~-   83 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGAE-VVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHV-   83 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCCE-EEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHc-
Confidence            5688999985   69999999988889995 88887653  33333 3344432 122222 12223333444443322 


Q ss_pred             CCccEEEEcCCCH--------------H---------------HHHHHHHHhhcCCEEEEecc
Q 048013          167 TGIDVSFDCAGFN--------------K---------------TMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       167 ~~~d~vi~~~g~~--------------~---------------~~~~~~~~l~~~G~~v~~g~  200 (216)
                      .++|++++++|..              +               ..+.+++.|+.+|+++.++.
T Consensus        84 g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~  146 (256)
T PRK07889         84 DGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDF  146 (256)
T ss_pred             CCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEee
Confidence            4799999988741              0               12445666777788887764

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=96.90  E-value=0.031  Score=44.15  Aligned_cols=78  Identities=21%  Similarity=0.251  Sum_probs=48.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCC-CcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .++++||.|+ |++|.++++.+...|++ |+.++++.++.+.   .... .+..+- +.++..+.+.++.+.. .++|++
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~~-v~~~~~~~~~~~~---~~~~-~~~~D~~~~~~~~~~~~~~~~~~-g~id~l   81 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGAN-VVNADIHGGDGQH---ENYQ-FVPTDVSSAEEVNHTVAEIIEKF-GRIDGL   81 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCcccccc---CceE-EEEccCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence            4688999996 89999999999999995 8888877654321   1111 111111 2233334444443222 479999


Q ss_pred             EEcCCC
Q 048013          173 FDCAGF  178 (216)
Q Consensus       173 i~~~g~  178 (216)
                      |.++|.
T Consensus        82 i~~Ag~   87 (266)
T PRK06171         82 VNNAGI   87 (266)
T ss_pred             EECCcc
Confidence            998873

>PRK06914 short chain dehydrogenase; Provisional

Probab=96.90  E-value=0.011  Score=47.09  Aligned_cols=80  Identities=16%  Similarity=0.256  Sum_probs=50.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----HcCC--C-EEEeCCC-CcccHHHHHHHHHHHcC
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KLGA--D-NIVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~g~--~-~~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      ++++||+|+ |.+|..+++.+...|++ |++++++.++.+...    ..+.  . ..+..+- +.+++.+ +.++.+. .
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~-~   79 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGYL-VIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKE-I   79 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHh-c
Confidence            568999996 89999999998889995 888888876654432    2221  1 1222222 2223333 4444322 2


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      .++|+++.++|.
T Consensus        80 ~~id~vv~~ag~   91 (280)
T PRK06914         80 GRIDLLVNNAGY   91 (280)
T ss_pred             CCeeEEEECCcc
Confidence            478999999874

>PRK08328 hypothetical protein; Provisional

Probab=96.90  E-value=0.022  Score=44.50  Aligned_cols=35  Identities=26%  Similarity=0.435  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      .+.+|+|+|+|++|..+++.+...|..++..+|.+
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            45779999999999999999999999988888754

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.89  E-value=0.012  Score=48.46  Aligned_cols=87  Identities=20%  Similarity=0.233  Sum_probs=58.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .|++|.|+|.|.+|..+++.++.+|++ |++.+++.+.. ..+..+...        .++    .++.    ...|+|+-
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~~~~-~~~~~~~~~--------~~l----~ell----~~aDiV~l  210 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGMR-ILYYSRTRKPE-AEKELGAEY--------RPL----EELL----RESDFVSL  210 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCCCChh-hHHHcCCEe--------cCH----HHHH----hhCCEEEE
Confidence            578999999999999999999999995 88998875432 223333311        111    2221    13688888


Q ss_pred             cCCCHHH----H-HHHHHHhhcCCEEEEec
Q 048013          175 CAGFNKT----M-STALSATRAGGKVCLVG  199 (216)
Q Consensus       175 ~~g~~~~----~-~~~~~~l~~~G~~v~~g  199 (216)
                      ++.....    + ...+..|+++..++.++
T Consensus       211 ~lP~t~~T~~~i~~~~~~~mk~ga~lIN~a  240 (333)
T PRK13243        211 HVPLTKETYHMINEERLKLMKPTAILVNTA  240 (333)
T ss_pred             eCCCChHHhhccCHHHHhcCCCCeEEEECc
Confidence            7775221    1 45667778888877776

>PRK06181 short chain dehydrogenase; Provisional

Probab=96.89  E-value=0.019  Score=45.32  Aligned_cols=81  Identities=22%  Similarity=0.321  Sum_probs=50.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCCC
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~  168 (216)
                      ++++||+|+ |++|..+++.+...|++ |+++++++++.+.+    +..+... .+..+- +.+...+.+.++.+. ..+
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~-Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~~   78 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQ-LVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVAR-FGG   78 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH-cCC
Confidence            357899996 99999999999889984 88898887664433    2233322 122211 122233333443322 246


Q ss_pred             ccEEEEcCCC
Q 048013          169 IDVSFDCAGF  178 (216)
Q Consensus       169 ~d~vi~~~g~  178 (216)
                      +|++|.++|.
T Consensus        79 id~vi~~ag~   88 (263)
T PRK06181         79 IDILVNNAGI   88 (263)
T ss_pred             CCEEEECCCc
Confidence            9999999874

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.88  E-value=0.052  Score=37.21  Aligned_cols=93  Identities=17%  Similarity=0.119  Sum_probs=62.1

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCC
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGF  178 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~  178 (216)
                      |+|.|.|.+|..+++.++..+. .+++++.++++.+.+++.+...+ .-+..+.   +.+++.   .-..++.++-++++
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~~i-~gd~~~~---~~l~~a---~i~~a~~vv~~~~~   72 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVEVI-YGDATDP---EVLERA---GIEKADAVVILTDD   72 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSEEE-ES-TTSH---HHHHHT---TGGCESEEEEESSS
T ss_pred             eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhcccccc-cccchhh---hHHhhc---CccccCEEEEccCC
Confidence            5788999999999999999665 59999999999999988885533 3222222   223332   33568999999987


Q ss_pred             HHHHH---HHHHHhhcCCEEEEec
Q 048013          179 NKTMS---TALSATRAGGKVCLVG  199 (216)
Q Consensus       179 ~~~~~---~~~~~l~~~G~~v~~g  199 (216)
                      .....   ..++.+.+..+++..-
T Consensus        73 d~~n~~~~~~~r~~~~~~~ii~~~   96 (116)
T PF02254_consen   73 DEENLLIALLARELNPDIRIIARV   96 (116)
T ss_dssp             HHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCeEEEEE
Confidence            44332   3334455666776543

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK06141 ornithine cyclodeaminase; Validated

Probab=96.86  E-value=0.033  Score=45.56  Aligned_cols=100  Identities=17%  Similarity=0.160  Sum_probs=63.7

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChHHHHHH-HHc---CCCEEEeCCCCcccHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARA-FGAPRIVIVDVDDYRLSVA-KKL---GADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~-~g~~~vv~~~~~~~~~~~~-~~~---g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      +....+..++++|+|+|.+|...+..+.. .+.+.|.+.+++.++.+.+ +++   +.. +...    .+..+.+     
T Consensus       118 ~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~-~~~~----~~~~~av-----  187 (314)
T PRK06141        118 SYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFD-AEVV----TDLEAAV-----  187 (314)
T ss_pred             HHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCc-eEEe----CCHHHHH-----
Confidence            33445677899999999999998865544 6767799999998875543 444   222 1111    1221111     


Q ss_pred             HcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          164 AMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                         ...|+|+.+++....+ .--+.++|+-.+..+|...
T Consensus       188 ---~~aDIVi~aT~s~~pv-l~~~~l~~g~~i~~ig~~~  222 (314)
T PRK06141        188 ---RQADIISCATLSTEPL-VRGEWLKPGTHLDLVGNFT  222 (314)
T ss_pred             ---hcCCEEEEeeCCCCCE-ecHHHcCCCCEEEeeCCCC
Confidence               3699999999874321 1125678888777777544

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=96.86  E-value=0.022  Score=43.86  Aligned_cols=105  Identities=14%  Similarity=0.166  Sum_probs=63.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEEe-------CCCCccc-HHHHHHHHHHH
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIVK-------VSTNLQD-IAEEVEKIQKA  164 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~~-------~~~~~~~-~~~~~~~~~~~  164 (216)
                      .++.+||+.|+|. |.-++-+|. .|++ |+++|.++.-.+.+ ++.+......       +....-. ....+.++...
T Consensus        33 ~~~~rvLd~GCG~-G~da~~LA~-~G~~-V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~  109 (213)
T TIGR03840        33 PAGARVFVPLCGK-SLDLAWLAE-QGHR-VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA  109 (213)
T ss_pred             CCCCeEEEeCCCc-hhHHHHHHh-CCCe-EEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence            5678999999885 777777775 7996 99999999887764 3333321100       0000000 00001111000


Q ss_pred             cCCCccEEEEcCCC--------HHHHHHHHHHhhcCCEEEEeccC
Q 048013          165 MGTGIDVSFDCAGF--------NKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       165 ~~~~~d~vi~~~g~--------~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      ....||.++|...-        ...++.+.++|+|+|+++++++.
T Consensus       110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~  154 (213)
T TIGR03840       110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD  154 (213)
T ss_pred             cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence            12368999996541        24678899999999997777653

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=96.86  E-value=0.018  Score=45.84  Aligned_cols=105  Identities=18%  Similarity=0.204  Sum_probs=67.3

Q ss_pred             HHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCC--CEEEeCCCCcccHHHHHHHHHH
Q 048013           86 HACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGA--DNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        86 ~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      .++...++.++.+||-+|+|. |..+..+++..++ .|+++|.+++..+.+++...  ..+...   ..++.    +. .
T Consensus        43 ~~l~~l~l~~~~~VLDiGcG~-G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~~~i~~~---~~D~~----~~-~  112 (263)
T PTZ00098         43 KILSDIELNENSKVLDIGSGL-GGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSDKNKIEFE---ANDIL----KK-D  112 (263)
T ss_pred             HHHHhCCCCCCCEEEEEcCCC-ChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCcCCceEEE---ECCcc----cC-C
Confidence            345667789999999999864 5556666776777 59999999888777765321  111111   01111    10 0


Q ss_pred             HcCCCccEEEEcC-----C--C-HHHHHHHHHHhhcCCEEEEecc
Q 048013          164 AMGTGIDVSFDCA-----G--F-NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       164 ~~~~~~d~vi~~~-----g--~-~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      .....||+|+..-     +  . ...++.+.+.|+|+|++++...
T Consensus       113 ~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~  157 (263)
T PTZ00098        113 FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY  157 (263)
T ss_pred             CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            1234699998621     1  1 2456788899999999998764

>PRK06197 short chain dehydrogenase; Provisional

Probab=96.85  E-value=0.016  Score=47.01  Aligned_cols=105  Identities=19%  Similarity=0.252  Sum_probs=63.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc----CCCE--EEeCCC-CcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL----GADN--IVKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~----g~~~--~~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      .+++++|.|+ |++|..+++.+...|++ |+.+.++.++.+.+ +++    +...  .+..+- +.++..+.+.++.+. 
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~~-vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~-   92 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGAH-VVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA-   92 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh-
Confidence            5689999996 99999999988888995 88888887664432 221    1111  222221 122333334444322 


Q ss_pred             CCCccEEEEcCCCH--------H---------------HHHHHHHHhhc--CCEEEEeccC
Q 048013          166 GTGIDVSFDCAGFN--------K---------------TMSTALSATRA--GGKVCLVGMG  201 (216)
Q Consensus       166 ~~~~d~vi~~~g~~--------~---------------~~~~~~~~l~~--~G~~v~~g~~  201 (216)
                      ..++|++|.++|..        +               ..+.+++.+..  .++++.++..
T Consensus        93 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~  153 (306)
T PRK06197         93 YPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSG  153 (306)
T ss_pred             CCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCH
Confidence            24699999998731        0               13445666643  4799988753

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.85  E-value=0.012  Score=47.50  Aligned_cols=36  Identities=14%  Similarity=0.224  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      .+++++|+|+|+.+.+++..+...|++++.+++|+.
T Consensus       123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~  158 (288)
T PRK12749        123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD  158 (288)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            567999999999999888877788998899999984

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.85  E-value=0.035  Score=42.37  Aligned_cols=35  Identities=26%  Similarity=0.456  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      ...+|+|.|+|++|..+++.+...|...++.+|.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            45779999999999999999999999779999888

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.85  E-value=0.045  Score=42.51  Aligned_cols=81  Identities=26%  Similarity=0.366  Sum_probs=48.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChHHHHHHH-H---cCCCE-EEeCCCCc-ccHHHHHHHHHHHcCC
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIV-DVDDYRLSVAK-K---LGADN-IVKVSTNL-QDIAEEVEKIQKAMGT  167 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~-~~~~~~~~~~~-~---~g~~~-~~~~~~~~-~~~~~~~~~~~~~~~~  167 (216)
                      ++++||+|+ |++|..++..+...|++ ++++ +++.++.+.+. .   .+... .+..+-.+ +...+.+.++.+.. .
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~   82 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGAK-VVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKF-G   82 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh-C
Confidence            468999986 99999999888888986 7777 88776654332 2   22222 22222211 22223333332222 3


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.+.|.
T Consensus        83 ~id~vi~~ag~   93 (247)
T PRK05565         83 KIDILVNNAGI   93 (247)
T ss_pred             CCCEEEECCCc
Confidence            69999998874

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=96.84  E-value=0.02  Score=45.11  Aligned_cols=82  Identities=23%  Similarity=0.296  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----HcCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KLGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      +++++||.|+ |++|..+++.+...|++ |+.++++.++.+.+.    ..+... .+..+- +.++..+.+.++.+.. .
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~-~   88 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGAR-VVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERF-G   88 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh-C
Confidence            5689999996 99999999999889994 888888877655432    222221 222221 1223333344443222 4


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|.+|.++|.
T Consensus        89 ~id~vi~~ag~   99 (259)
T PRK08213         89 HVDILVNNAGA   99 (259)
T ss_pred             CCCEEEECCCC
Confidence            69999999874

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=96.84  E-value=0.037  Score=47.38  Aligned_cols=102  Identities=19%  Similarity=0.259  Sum_probs=63.2

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHH----HcCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAK----KLGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ...+++++++||-.|+|+ |..++.++..++ -..|+++|.++++++.++    ++|...+.....   |..+ +...  
T Consensus       231 ~~l~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~---Da~~-l~~~--  303 (431)
T PRK14903        231 LLMELEPGLRVLDTCAAP-GGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIA---DAER-LTEY--  303 (431)
T ss_pred             HHhCCCCCCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEEC---chhh-hhhh--
Confidence            345678999999998765 555566666652 236999999999887664    467654322211   2211 1111  


Q ss_pred             HcCCCccEEEE---cCCC------H-------------------HHHHHHHHHhhcCCEEEEe
Q 048013          164 AMGTGIDVSFD---CAGF------N-------------------KTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       164 ~~~~~~d~vi~---~~g~------~-------------------~~~~~~~~~l~~~G~~v~~  198 (216)
                       ....||.|+-   |+|.      +                   ..+..+++.|+|+|+++..
T Consensus       304 -~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs  365 (431)
T PRK14903        304 -VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS  365 (431)
T ss_pred             -hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence             1346999885   3332      1                   2356788899999987643

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=96.83  E-value=0.021  Score=45.89  Aligned_cols=90  Identities=14%  Similarity=0.139  Sum_probs=65.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHH-HHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYR-LSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      +|.++|.|.+|.-.++-+...|+. +.+.+++.++ .+.+++.|+...-.       ..+..        ...|+||-++
T Consensus         2 kIafIGLG~MG~pmA~~L~~aG~~-v~v~~r~~~ka~~~~~~~Ga~~a~s-------~~eaa--------~~aDvVitmv   65 (286)
T COG2084           2 KIAFIGLGIMGSPMAANLLKAGHE-VTVYNRTPEKAAELLAAAGATVAAS-------PAEAA--------AEADVVITML   65 (286)
T ss_pred             eEEEEcCchhhHHHHHHHHHCCCE-EEEEeCChhhhhHHHHHcCCcccCC-------HHHHH--------HhCCEEEEec
Confidence            577889999999999999999985 9999999998 78888888875321       11111        2588999999


Q ss_pred             CCHHHHHHHH-------HHhhcCCEEEEeccCCC
Q 048013          177 GFNKTMSTAL-------SATRAGGKVCLVGMGHR  203 (216)
Q Consensus       177 g~~~~~~~~~-------~~l~~~G~~v~~g~~~~  203 (216)
                      ++....+.++       ..++++..++.++...+
T Consensus        66 ~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp   99 (286)
T COG2084          66 PDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISP   99 (286)
T ss_pred             CCHHHHHHHHhCccchhhcCCCCCEEEECCCCCH
Confidence            8865554443       33457778888775443

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=96.83  E-value=0.028  Score=43.22  Aligned_cols=97  Identities=13%  Similarity=0.245  Sum_probs=57.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHH-HcCCCcc
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQK-AMGTGID  170 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d  170 (216)
                      ++++++||-+|+|+ |..+..+++..+. ..|+++|.++.     ..+..-.++.  .+..+. +.+.++.+ .....+|
T Consensus        49 ~~~~~~VLDlG~Gt-G~~t~~l~~~~~~~~~V~aVDi~~~-----~~~~~v~~i~--~D~~~~-~~~~~i~~~~~~~~~D  119 (209)
T PRK11188         49 FKPGMTVVDLGAAP-GGWSQYAVTQIGDKGRVIACDILPM-----DPIVGVDFLQ--GDFRDE-LVLKALLERVGDSKVQ  119 (209)
T ss_pred             CCCCCEEEEEcccC-CHHHHHHHHHcCCCceEEEEecccc-----cCCCCcEEEe--cCCCCh-HHHHHHHHHhCCCCCC
Confidence            58899999999875 5566666676653 26999998761     1111111222  111111 11222221 2356799


Q ss_pred             EEEEcCC-----C------------HHHHHHHHHHhhcCCEEEEe
Q 048013          171 VSFDCAG-----F------------NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       171 ~vi~~~g-----~------------~~~~~~~~~~l~~~G~~v~~  198 (216)
                      +|+....     .            ...++.+.+.|+|+|++++.
T Consensus       120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~  164 (209)
T PRK11188        120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK  164 (209)
T ss_pred             EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            9997542     2            13567888899999999874

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=96.83  E-value=0.06  Score=41.79  Aligned_cols=80  Identities=15%  Similarity=0.222  Sum_probs=47.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChH--HHHHHHHcC---CC-EEEeCCCC-cccHHHHHHHHHHHcCCC
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDY--RLSVAKKLG---AD-NIVKVSTN-LQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~--~~~~~~~~g---~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~  168 (216)
                      ++++|.|+ |++|..+++.+...|++ |+.++++..  ..+..+++.   .. ..+..+-. .++..+.++++... -.+
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~~-vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-~~~   80 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGYR-VIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEE-EGP   80 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHH-cCC
Confidence            47899985 99999999988888984 888877743  122223222   11 12222211 22333334443322 246


Q ss_pred             ccEEEEcCCC
Q 048013          169 IDVSFDCAGF  178 (216)
Q Consensus       169 ~d~vi~~~g~  178 (216)
                      +|++|.++|.
T Consensus        81 id~vi~~ag~   90 (245)
T PRK12824         81 VDILVNNAGI   90 (245)
T ss_pred             CCEEEECCCC
Confidence            9999999874

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=96.83  E-value=0.029  Score=43.86  Aligned_cols=104  Identities=20%  Similarity=0.253  Sum_probs=66.5

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHc
Q 048013           91 ANIGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        91 ~~~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      .+..+.++||-+|.|. |..++.+++.++ ..+++.++.+++..+.+++    .|....+.+  ...++.+.+.++....
T Consensus        64 ~~~~~~~~vLEiGt~~-G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~--~~gda~~~L~~l~~~~  140 (234)
T PLN02781         64 VKIMNAKNTLEIGVFT-GYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINF--IQSDALSALDQLLNND  140 (234)
T ss_pred             HHHhCCCEEEEecCcc-cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE--EEccHHHHHHHHHhCC
Confidence            4456778999999653 556666666653 3369999999988776644    455432221  1234444454442211


Q ss_pred             -CCCccEEEEcCCC---HHHHHHHHHHhhcCCEEEE
Q 048013          166 -GTGIDVSFDCAGF---NKTMSTALSATRAGGKVCL  197 (216)
Q Consensus       166 -~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~  197 (216)
                       ...||.||--..-   ...+..+++.++|||.++.
T Consensus       141 ~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~  176 (234)
T PLN02781        141 PKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAF  176 (234)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence             3579999865432   3567888999999998885

>PRK08251 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.023  Score=44.40  Aligned_cols=80  Identities=20%  Similarity=0.272  Sum_probs=50.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-c-----CCC-EEEeCCC-CcccHHHHHHHHHHHcC
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-L-----GAD-NIVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~-----g~~-~~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      +++++|+|+ |++|..+++.+...|++ |++++++.++.+.+.. +     +.. ..+..+- +.+...+.++++.+. -
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~   79 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRD-LALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDE-L   79 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHH-c
Confidence            467999996 99999999888888984 8888888876654421 1     211 1222222 222334444444332 3


Q ss_pred             CCccEEEEcCC
Q 048013          167 TGIDVSFDCAG  177 (216)
Q Consensus       167 ~~~d~vi~~~g  177 (216)
                      .++|++|.++|
T Consensus        80 ~~id~vi~~ag   90 (248)
T PRK08251         80 GGLDRVIVNAG   90 (248)
T ss_pred             CCCCEEEECCC
Confidence            47999999987

>TIGR00477 tehB tellurite resistance protein TehB

Probab=96.82  E-value=0.0072  Score=45.87  Aligned_cols=94  Identities=17%  Similarity=0.174  Sum_probs=57.3

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHcCC
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (216)
                      ...++.+||.+|+|. |..++.+++ .|. .|+++|.++.-.+.+++    .+......    ..+.    ...  ....
T Consensus        27 ~~~~~~~vLDiGcG~-G~~a~~la~-~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~----~~d~----~~~--~~~~   93 (195)
T TIGR00477        27 KTVAPCKTLDLGCGQ-GRNSLYLSL-AGY-DVRAWDHNPASIASVLDMKARENLPLRTD----AYDI----NAA--ALNE   93 (195)
T ss_pred             ccCCCCcEEEeCCCC-CHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHHHhCCCceeE----eccc----hhc--cccC
Confidence            344567899999864 667777776 477 49999999876665533    23321111    0111    111  0124


Q ss_pred             CccEEEEcCC-----C---HHHHHHHHHHhhcCCEEEEe
Q 048013          168 GIDVSFDCAG-----F---NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       168 ~~d~vi~~~g-----~---~~~~~~~~~~l~~~G~~v~~  198 (216)
                      .+|+|+....     .   ...++.+.+.|+|+|.++++
T Consensus        94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        94 DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            6999986522     1   24667888899999985544

Part of a tellurite-reducing operon tehA and tehB

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.81  E-value=0.041  Score=42.60  Aligned_cols=92  Identities=16%  Similarity=0.097  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh-HHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD-YRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      .+..|||+|+|.++.-=+..+...|++ |.++...- +.+..+.+.+.-..+.     ..+..  ..+     .++++||
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~-VtVVap~i~~el~~l~~~~~i~~~~-----r~~~~--~dl-----~g~~LVi   90 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKKGCY-VYILSKKFSKEFLDLKKYGNLKLIK-----GNYDK--EFI-----KDKHLIV   90 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCCCCHHHHHHHhCCCEEEEe-----CCCCh--HHh-----CCCcEEE
Confidence            577999999999998878888889996 66664332 2222222222222211     11111  111     3689999


Q ss_pred             EcCCCHHHHHHHHHHhhcCCEEEEec
Q 048013          174 DCAGFNKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       174 ~~~g~~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      -+++++..-+.....++..+.++...
T Consensus        91 aATdD~~vN~~I~~~a~~~~~lvn~v  116 (223)
T PRK05562         91 IATDDEKLNNKIRKHCDRLYKLYIDC  116 (223)
T ss_pred             ECCCCHHHHHHHHHHHHHcCCeEEEc
Confidence            99999777777777777767666554

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=96.81  E-value=0.00028  Score=49.48  Aligned_cols=49  Identities=31%  Similarity=0.523  Sum_probs=34.5

Q ss_pred             cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCC--CHHHHHHHHHHhhcCCEEEEec
Q 048013          139 LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG--FNKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       139 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g--~~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ||++++++|+.  .++         ..+.++|+|||++|  ....+..++++| ++|+++.+|
T Consensus         1 LGAd~vidy~~--~~~---------~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~   51 (127)
T PF13602_consen    1 LGADEVIDYRD--TDF---------AGPGGVDVVIDTVGQTGESLLDASRKLL-PGGRVVSIG   51 (127)
T ss_dssp             CT-SEEEETTC--SHH---------HTTS-EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-
T ss_pred             CCcCEEecCCC--ccc---------cCCCCceEEEECCCCccHHHHHHHHHHC-CCCEEEEEC
Confidence            68899998753  333         24678999999999  644447777888 999999887

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.80  E-value=0.018  Score=45.36  Aligned_cols=101  Identities=18%  Similarity=0.202  Sum_probs=58.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCC-CEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGA-DNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .+++|+|+|+ |.+|..+++.+...|++ |+++.++.++......-+. -.++..+-.  +..+.+.+   ..+.++|++
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~--d~~~~l~~---~~~~~~d~v   89 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGFA-VKAGVRDVDKAKTSLPQDPSLQIVRADVT--EGSDKLVE---AIGDDSDAV   89 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCCE-EEEEecCHHHHHHhcccCCceEEEEeeCC--CCHHHHHH---HhhcCCCEE
Confidence            4578999996 99999999988888985 8888888766433221111 111211111  11111221   122479999


Q ss_pred             EEcCCCHH-------------HHHHHHHHhhcC--CEEEEeccC
Q 048013          173 FDCAGFNK-------------TMSTALSATRAG--GKVCLVGMG  201 (216)
Q Consensus       173 i~~~g~~~-------------~~~~~~~~l~~~--G~~v~~g~~  201 (216)
                      |.++|...             ....+++.+...  ++++.++..
T Consensus        90 i~~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~  133 (251)
T PLN00141         90 ICATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI  133 (251)
T ss_pred             EECCCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence            99877411             134555555543  588887743

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=96.80  E-value=0.028  Score=43.91  Aligned_cols=84  Identities=19%  Similarity=0.321  Sum_probs=53.2

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE--EE--eCCC-CcccHHHHHHHHH
Q 048013           93 IGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN--IV--KVST-NLQDIAEEVEKIQ  162 (216)
Q Consensus        93 ~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~--~~--~~~~-~~~~~~~~~~~~~  162 (216)
                      ..++++++|.|+ |++|..+++.+...|++ |++++++.++.+.+    ++.+...  .+  +.+. +..+..+.+..+.
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~-Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGAT-VILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE   87 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCc-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence            457889999986 99999999988888995 88898887664333    2333221  22  2211 1233333344443


Q ss_pred             HHcCCCccEEEEcCCC
Q 048013          163 KAMGTGIDVSFDCAGF  178 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~  178 (216)
                      +. ..++|.+|.+++.
T Consensus        88 ~~-~~~id~vi~~Ag~  102 (247)
T PRK08945         88 EQ-FGRLDGVLHNAGL  102 (247)
T ss_pred             HH-hCCCCEEEECCcc
Confidence            22 2479999998864

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=96.79  E-value=0.065  Score=43.22  Aligned_cols=114  Identities=15%  Similarity=0.224  Sum_probs=69.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH----cCCCE---EEeCCCCcccHHHHHHHHHHH
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK----LGADN---IVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~----~g~~~---~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      +-|++.+|.|+ .++|.+-+.=+...|. +|+.+.|+++|++.. ++    .++..   .+|+...++++++..+.+   
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAkrG~-nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l---  122 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAKRGF-NVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKL---  122 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHh---
Confidence            34688999997 6999775544444899 499999999998765 22    34321   233333333233332232   


Q ss_pred             cCCCccEEEEcCCCH----H-----------------------HHHHHHHHh--hcCCEEEEeccCCCCCcccchh
Q 048013          165 MGTGIDVSFDCAGFN----K-----------------------TMSTALSAT--RAGGKVCLVGMGHREMTVPLTP  211 (216)
Q Consensus       165 ~~~~~d~vi~~~g~~----~-----------------------~~~~~~~~l--~~~G~~v~~g~~~~~~~~~~~~  211 (216)
                      .+-.+-+.++++|-.    +                       ..+..+..|  +..|.++.+|...+-.+.+...
T Consensus       123 ~~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~p~p~~s  198 (312)
T KOG1014|consen  123 AGLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLIPTPLLS  198 (312)
T ss_pred             cCCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccccccChhHH
Confidence            455677889998851    1                       223344443  3568999999766655655543

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.78  E-value=0.016  Score=46.79  Aligned_cols=38  Identities=13%  Similarity=0.271  Sum_probs=33.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHH
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV  135 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~  135 (216)
                      .+|.|+|+|.+|..+++.+...|.+ |+..|.+++.++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~~~~~~   43 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVD-VLVFETTEELATA   43 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCE-EEEEECCHHHHHH
Confidence            4789999999999999988888995 9999999988765

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=96.78  E-value=0.032  Score=45.91  Aligned_cols=96  Identities=17%  Similarity=0.171  Sum_probs=63.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCChHHHHHH-HHc----CCCEEEeCCCCcccHHHHHHHHHHHcC
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAAR-AFGAPRIVIVDVDDYRLSVA-KKL----GADNIVKVSTNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~-~~g~~~vv~~~~~~~~~~~~-~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      .+..++++|+|+|..+...+..+. ..+.+++.+.+++.++.+.+ +++    +.. +...    .+..+.+        
T Consensus       126 ~~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~-v~~~----~~~~~av--------  192 (326)
T TIGR02992       126 REDSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGID-VTAA----TDPRAAM--------  192 (326)
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCce-EEEe----CCHHHHh--------
Confidence            455678999999999988887776 47877899999998876543 433    332 2111    1222221        


Q ss_pred             CCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          167 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       167 ~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      ...|+|+.+++....+ .....++++-.+..+|...
T Consensus       193 ~~aDiVvtaT~s~~p~-i~~~~l~~g~~i~~vg~~~  227 (326)
T TIGR02992       193 SGADIIVTTTPSETPI-LHAEWLEPGQHVTAMGSDA  227 (326)
T ss_pred             ccCCEEEEecCCCCcE-ecHHHcCCCcEEEeeCCCC
Confidence            3699999999874321 1224578888888888543

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=96.78  E-value=0.039  Score=42.83  Aligned_cols=103  Identities=20%  Similarity=0.259  Sum_probs=64.8

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ....++++++||-+|+|. |..+..+++..+. ..++++|.+++..+.+++    .+.+.+..+..   +..    ++. 
T Consensus        39 ~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~----~~~-  109 (231)
T TIGR02752        39 KRMNVQAGTSALDVCCGT-ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHG---NAM----ELP-  109 (231)
T ss_pred             HhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEe---chh----cCC-
Confidence            456678899999999875 6667777776542 269999999887766643    23322211111   111    110 


Q ss_pred             HcCCCccEEEEcCC-----C-HHHHHHHHHHhhcCCEEEEecc
Q 048013          164 AMGTGIDVSFDCAG-----F-NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       164 ~~~~~~d~vi~~~g-----~-~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      .....+|+|+-...     . ...++.+.+.|+|+|+++..-.
T Consensus       110 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       110 FDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             CCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence            12356999876422     2 2456788999999999987653

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=96.78  E-value=0.031  Score=47.77  Aligned_cols=103  Identities=17%  Similarity=0.197  Sum_probs=62.8

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEEE-eCCCCcccHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNIV-KVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~~-~~~~~~~~~~~~~~~~~~  163 (216)
                      ....++++++||-.|+|+ |..++.+++.++-..|+++|.++++++.+    +++|....+ ..+.+..+.    ..+  
T Consensus       232 ~~L~~~~g~~VLDlcag~-G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~----~~~--  304 (426)
T TIGR00563       232 TWLAPQNEETILDACAAP-GGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP----SQW--  304 (426)
T ss_pred             HHhCCCCCCeEEEeCCCc-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccc----ccc--
Confidence            445678899999998764 54555666665523699999999987665    345665211 111111100    000  


Q ss_pred             HcCCCccEEEE---cCCC-------------------------HHHHHHHHHHhhcCCEEEEe
Q 048013          164 AMGTGIDVSFD---CAGF-------------------------NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       164 ~~~~~~d~vi~---~~g~-------------------------~~~~~~~~~~l~~~G~~v~~  198 (216)
                      .....||.|+-   |+|.                         ...+..+++.|+|||+++..
T Consensus       305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys  367 (426)
T TIGR00563       305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA  367 (426)
T ss_pred             ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            01346999885   3431                         13567788899999988743

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.78  E-value=0.015  Score=46.95  Aligned_cols=37  Identities=19%  Similarity=0.318  Sum_probs=32.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      ..+++++|+|+|++|.+++..+...|+++|++++++.
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            3568899999999999999988889997788898885

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=96.78  E-value=0.042  Score=44.73  Aligned_cols=36  Identities=22%  Similarity=0.158  Sum_probs=28.9

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCChHH
Q 048013           95 PETNVLIMGS---GPIGLVTMLAARAFGAPRIVIVDVDDYR  132 (216)
Q Consensus        95 ~~~~vlv~Ga---g~~G~~~i~~a~~~g~~~vv~~~~~~~~  132 (216)
                      .++++||.|+   .++|.++++.+...|++ |+. .++.++
T Consensus         8 ~gk~alITGa~~s~GIG~a~A~~la~~Ga~-Vv~-~~~~~~   46 (303)
T PLN02730          8 RGKRAFIAGVADDNGYGWAIAKALAAAGAE-ILV-GTWVPA   46 (303)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHCCCE-EEE-EeCcch
Confidence            5889999997   79999999999999996 666 444443

>PRK08264 short chain dehydrogenase; Validated

Probab=96.77  E-value=0.011  Score=45.81  Aligned_cols=77  Identities=21%  Similarity=0.267  Sum_probs=49.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCE-EEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADN-IVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .+++++|+|+ |.+|..+++.+...|+++|++++++.++.+.   .+... .+..+-.  +. +.+.++.+. -..+|++
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~~D~~--~~-~~~~~~~~~-~~~id~v   77 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQLDVT--DP-ASVAAAAEA-ASDVTIL   77 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEEecCC--CH-HHHHHHHHh-cCCCCEE
Confidence            4678999986 9999999999999998448888888766543   32221 2221111  11 123333222 2358999


Q ss_pred             EEcCCC
Q 048013          173 FDCAGF  178 (216)
Q Consensus       173 i~~~g~  178 (216)
                      |.+.|.
T Consensus        78 i~~ag~   83 (238)
T PRK08264         78 VNNAGI   83 (238)
T ss_pred             EECCCc
Confidence            999886

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.77  E-value=0.11  Score=40.20  Aligned_cols=82  Identities=21%  Similarity=0.257  Sum_probs=46.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChH-HHH-HH---HHcCCCE-EEeCCCCc-ccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDY-RLS-VA---KKLGADN-IVKVSTNL-QDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~-~~~-~~---~~~g~~~-~~~~~~~~-~~~~~~~~~~~~~~~  166 (216)
                      .+++++|.|+ |.+|..+++.+...|++ |+++.++.. +.+ ..   +..+... .+..+-.+ +++.+.+.++.+. -
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~   81 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGAN-VVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAE-F   81 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH-c
Confidence            4578999996 99999999999999996 655555433 222 22   2223222 12112211 2222333333322 2


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      .++|.+|.++|.
T Consensus        82 ~~id~vi~~ag~   93 (248)
T PRK05557         82 GGVDILVNNAGI   93 (248)
T ss_pred             CCCCEEEECCCc
Confidence            468999998874

>PRK06114 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.024  Score=44.58  Aligned_cols=82  Identities=15%  Similarity=0.297  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChH-HHH-H---HHHcCCCE-EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDY-RLS-V---AKKLGADN-IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~-~~~-~---~~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .+++++|.|+ +++|..+++.+...|++ |++++++.+ ..+ .   ++..+... .+..+- +.++..+.+.++.+.. 
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~-v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~-   84 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGAD-VALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAEL-   84 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            5688999986 89999999999999995 888877643 222 2   22334322 222222 2223334444443333 


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      .++|++|.+.|.
T Consensus        85 g~id~li~~ag~   96 (254)
T PRK06114         85 GALTLAVNAAGI   96 (254)
T ss_pred             CCCCEEEECCCC
Confidence            469999999984

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.76  E-value=0.027  Score=47.29  Aligned_cols=35  Identities=37%  Similarity=0.499  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      .+.+|+|+|+|++|..++..+...|..++..+|.+
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            55689999999999999999999999889999887

>PRK12744 short chain dehydrogenase; Provisional

Probab=96.74  E-value=0.057  Score=42.44  Aligned_cols=82  Identities=18%  Similarity=0.195  Sum_probs=47.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC----hHHHH-H---HHHcCCCE-EEeCCC-CcccHHHHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVD----DYRLS-V---AKKLGADN-IVKVST-NLQDIAEEVEKIQK  163 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~----~~~~~-~---~~~~g~~~-~~~~~~-~~~~~~~~~~~~~~  163 (216)
                      .+++++|+|+ |++|..+++.+...|++ ++++.++    .+..+ .   ++..+... .+..+- +.++..+.+.++.+
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~~G~~-vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   85 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAAQGAK-AVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA   85 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCc-EEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence            4678999996 89999999999989996 5555322    22222 2   22234332 222221 22233333333332


Q ss_pred             HcCCCccEEEEcCCC
Q 048013          164 AMGTGIDVSFDCAGF  178 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~  178 (216)
                      . ..++|++|.++|.
T Consensus        86 ~-~~~id~li~~ag~   99 (257)
T PRK12744         86 A-FGRPDIAINTVGK   99 (257)
T ss_pred             h-hCCCCEEEECCcc
Confidence            2 2479999999985

>PRK07069 short chain dehydrogenase; Validated

Probab=96.74  E-value=0.044  Score=42.76  Aligned_cols=101  Identities=20%  Similarity=0.259  Sum_probs=60.2

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC-hHHHHHH-HHc----CCCEE--E--eCCCCcccHHHHHHHHHHHcCC
Q 048013           99 VLIMGS-GPIGLVTMLAARAFGAPRIVIVDVD-DYRLSVA-KKL----GADNI--V--KVSTNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        99 vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~-~~~~~~~-~~~----g~~~~--~--~~~~~~~~~~~~~~~~~~~~~~  167 (216)
                      ++|+|+ |++|..+++.+...|++ |++++++ .++.+.+ +++    +....  +  ++ .+.+.+.+.+.++.+. -+
T Consensus         2 ilVtG~~~~iG~~~a~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~~-~~   78 (251)
T PRK07069          2 AFITGAAGGLGRAIARRMAEQGAK-VFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDV-TDEAQWQALLAQAADA-MG   78 (251)
T ss_pred             EEEECCCChHHHHHHHHHHHCCCE-EEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeec-CCHHHHHHHHHHHHHH-cC
Confidence            788885 89999999999889995 8888877 5544433 222    11111  1  22 1223333344444322 24


Q ss_pred             CccEEEEcCCCH-----------H--------------HHHHHHHHhhc--CCEEEEeccCC
Q 048013          168 GIDVSFDCAGFN-----------K--------------TMSTALSATRA--GGKVCLVGMGH  202 (216)
Q Consensus       168 ~~d~vi~~~g~~-----------~--------------~~~~~~~~l~~--~G~~v~~g~~~  202 (216)
                      ++|++|.++|..           +              ..+.+++.++.  .|+++.++...
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~  140 (251)
T PRK07069         79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVA  140 (251)
T ss_pred             CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChh
Confidence            699999998741           0              23455566643  47888887543

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=96.73  E-value=0.06  Score=43.48  Aligned_cols=114  Identities=17%  Similarity=0.151  Sum_probs=72.6

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-H--cCCCE--EEeCCCCcccHHHHHHHHHH-Hc
Q 048013           93 IGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-K--LGADN--IVKVSTNLQDIAEEVEKIQK-AM  165 (216)
Q Consensus        93 ~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~--~g~~~--~~~~~~~~~~~~~~~~~~~~-~~  165 (216)
                      ..+++.|+|.|+ ++.|.+.+.-+...|.. |++.--+++.-+.++ +  .+--.  ..++ +.+++..+..+.+.+ ..
T Consensus        26 ~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~-V~Agcl~~~gae~L~~~~~s~rl~t~~LDV-T~~esi~~a~~~V~~~l~  103 (322)
T KOG1610|consen   26 SLSDKAVLITGCDSGFGRLLAKKLDKKGFR-VFAGCLTEEGAESLRGETKSPRLRTLQLDV-TKPESVKEAAQWVKKHLG  103 (322)
T ss_pred             ccCCcEEEEecCCcHHHHHHHHHHHhcCCE-EEEEeecCchHHHHhhhhcCCcceeEeecc-CCHHHHHHHHHHHHHhcc
Confidence            456778999998 99999999999999995 666645544433332 1  22212  2232 334444444333332 23


Q ss_pred             CCCccEEEEcCCCH--------------------------HHHHHHHHHhhc-CCEEEEeccCCCCCccc
Q 048013          166 GTGIDVSFDCAGFN--------------------------KTMSTALSATRA-GGKVCLVGMGHREMTVP  208 (216)
Q Consensus       166 ~~~~d~vi~~~g~~--------------------------~~~~~~~~~l~~-~G~~v~~g~~~~~~~~~  208 (216)
                      ..+...+++++|-.                          ...+..+.++++ .||++.++...+..+.|
T Consensus       104 ~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR~~~p  173 (322)
T KOG1610|consen  104 EDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGRVALP  173 (322)
T ss_pred             cccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccCccCc
Confidence            56689999999831                          245667777765 69999999777665553

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=96.73  E-value=0.023  Score=44.13  Aligned_cols=100  Identities=21%  Similarity=0.336  Sum_probs=60.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChH-------------------HHHHH----HHcCCC-EEEeCCCC
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDY-------------------RLSVA----KKLGAD-NIVKVSTN  150 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~-------------------~~~~~----~~~g~~-~~~~~~~~  150 (216)
                      +..+|+|.|.|++|..++..+.+.|+.++..+|.+.-                   |.+.+    +.+.+. ++..+   
T Consensus        29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~---  105 (263)
T COG1179          29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAI---  105 (263)
T ss_pred             hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeeh---
Confidence            4578999999999999999999999998888876641                   11111    112221 22211   


Q ss_pred             cccH-HHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCC-EEEEecc
Q 048013          151 LQDI-AEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGG-KVCLVGM  200 (216)
Q Consensus       151 ~~~~-~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G-~~v~~g~  200 (216)
                      +..+ .+.+.++   ...++|+|+||+-+-..--.++..+..++ .++..+.
T Consensus       106 ~~f~t~en~~~~---~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~G  154 (263)
T COG1179         106 NDFITEENLEDL---LSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMG  154 (263)
T ss_pred             HhhhCHhHHHHH---hcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeecc
Confidence            1111 1223333   45689999999998444334555555554 5555543

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.72  E-value=0.01  Score=47.45  Aligned_cols=54  Identities=19%  Similarity=0.153  Sum_probs=42.2

Q ss_pred             HHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc
Q 048013           86 HACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL  139 (216)
Q Consensus        86 ~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~  139 (216)
                      ++++..+...+++++|+|+|+.+.+++..++.+|+..+.+++|+.++.+.+ +.+
T Consensus       112 ~~L~~~~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~  166 (272)
T PRK12550        112 KLLASYQVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELY  166 (272)
T ss_pred             HHHHhcCCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHh
Confidence            445444444567899999999999999999999998899999998876654 344

>PRK06720 hypothetical protein; Provisional

Probab=96.71  E-value=0.044  Score=40.62  Aligned_cols=82  Identities=23%  Similarity=0.336  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-H---HcCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-K---KLGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~---~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      +++.++|.|+ +++|..++..+...|++ |++++++.+..+.. +   +.+... .+..+- +.+++.+.+.++.+.. +
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~-V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~-G   92 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAK-VIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAF-S   92 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc-C
Confidence            5788999996 79999999888888985 88888887654332 2   234332 222222 1223334444433322 4


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++++++|.
T Consensus        93 ~iDilVnnAG~  103 (169)
T PRK06720         93 RIDMLFQNAGL  103 (169)
T ss_pred             CCCEEEECCCc
Confidence            68999999885

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.71  E-value=0.018  Score=46.25  Aligned_cols=43  Identities=26%  Similarity=0.247  Sum_probs=36.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGA  141 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~  141 (216)
                      +|.|+|.|.+|...+..++..|.+ |++.++++++.+.+.+.|.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~-V~~~d~~~~~~~~a~~~g~   44 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHT-VYGVSRRESTCERAIERGL   44 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHCCC
Confidence            588899999999998888888884 9999999988888877664

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.71  E-value=0.0079  Score=49.14  Aligned_cols=87  Identities=11%  Similarity=0.175  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .++++.|+|.|.+|..+++.++.+|++ |++.+++.++..     +......    ..+    +.++.    ...|+|+.
T Consensus       135 ~g~tvgIvG~G~IG~~vA~~l~afG~~-V~~~~~~~~~~~-----~~~~~~~----~~~----l~e~l----~~aDvvv~  196 (312)
T PRK15469        135 EDFTIGILGAGVLGSKVAQSLQTWGFP-LRCWSRSRKSWP-----GVQSFAG----REE----LSAFL----SQTRVLIN  196 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCCCCCC-----Cceeecc----ccc----HHHHH----hcCCEEEE
Confidence            578999999999999999999999995 888887643321     1111110    011    22221    24788888


Q ss_pred             cCCCHHHH-----HHHHHHhhcCCEEEEec
Q 048013          175 CAGFNKTM-----STALSATRAGGKVCLVG  199 (216)
Q Consensus       175 ~~g~~~~~-----~~~~~~l~~~G~~v~~g  199 (216)
                      +.......     ...+..|+++..++.+|
T Consensus       197 ~lPlt~~T~~li~~~~l~~mk~ga~lIN~a  226 (312)
T PRK15469        197 LLPNTPETVGIINQQLLEQLPDGAYLLNLA  226 (312)
T ss_pred             CCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence            87753222     34666788888888776

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=96.70  E-value=0.031  Score=43.96  Aligned_cols=82  Identities=17%  Similarity=0.247  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .+++++|.|+ +++|..+++.+...|++ ++.++++.++.+.+    +..+... .+..+- +.++..+.+.++.+. -.
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~-~~   87 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSK-LG   87 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH-cC
Confidence            4789999996 89999999988889995 78888877665433    2223321 222221 222333344444332 24


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|+++.++|.
T Consensus        88 ~~d~li~~ag~   98 (255)
T PRK06113         88 KVDILVNNAGG   98 (255)
T ss_pred             CCCEEEECCCC
Confidence            68999999873

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=96.70  E-value=0.025  Score=45.64  Aligned_cols=43  Identities=16%  Similarity=0.160  Sum_probs=36.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGA  141 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~  141 (216)
                      +|.|+|.|.+|..++..+...|.+ |++.+++.++.+.+.+.|.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~   43 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQ-LHVTTIGPEVADELLAAGA   43 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCe-EEEEcCCHHHHHHHHHCCC
Confidence            377889999999998888888985 8999999988888776655

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.70  E-value=0.055  Score=42.13  Aligned_cols=34  Identities=29%  Similarity=0.445  Sum_probs=29.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      ..+|+|.|+|++|..+++.+...|..+++.+|.+
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            5789999999999999999999999888888544

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=96.70  E-value=0.032  Score=43.34  Aligned_cols=82  Identities=21%  Similarity=0.293  Sum_probs=52.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCE-EEeCCCC-cccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADN-IVKVSTN-LQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~d  170 (216)
                      ++++++|.|+ |.+|..+++.+...|+ .|+..+++.++.+.+ ..++... .+..+-. .+...+.+.++.+.. .++|
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id   82 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADL-EGVD   82 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHc-CCCC
Confidence            4678999996 9999999999988998 477787877766544 3344322 2222211 223333334443222 4799


Q ss_pred             EEEEcCCC
Q 048013          171 VSFDCAGF  178 (216)
Q Consensus       171 ~vi~~~g~  178 (216)
                      ++|.++|.
T Consensus        83 ~vi~~ag~   90 (245)
T PRK12936         83 ILVNNAGI   90 (245)
T ss_pred             EEEECCCC
Confidence            99999884

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=96.69  E-value=0.0057  Score=47.98  Aligned_cols=92  Identities=20%  Similarity=0.284  Sum_probs=59.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcC-CCE--------EEeCCCCcccHHHHHHHHHHHcC
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLG-ADN--------IVKVSTNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g-~~~--------~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      |.+||-.|+|+ |++..-+|+ +|+. |+++|.+++..+.+++-. .+.        .+.+..      ..++..    -
T Consensus        90 g~~ilDvGCGg-GLLSepLAr-lga~-V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~------~~~E~~----~  156 (282)
T KOG1270|consen   90 GMKILDVGCGG-GLLSEPLAR-LGAQ-VTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYED------TDVEGL----T  156 (282)
T ss_pred             CceEEEeccCc-cccchhhHh-hCCe-eEeecccHHHHHHHHHhhhcCchhccccceeeehhh------cchhhc----c
Confidence            47899999876 888887777 7885 999999998877775421 111        111111      112221    2


Q ss_pred             CCccEEEEcCC------CHHHHHHHHHHhhcCCEEEEecc
Q 048013          167 TGIDVSFDCAG------FNKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       167 ~~~d~vi~~~g------~~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      ..||+|+..=-      .++.+..+++.|+|+|++++--.
T Consensus       157 ~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfitti  196 (282)
T KOG1270|consen  157 GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTI  196 (282)
T ss_pred             cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence            34888875211      13566788999999999987654

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=96.69  E-value=0.033  Score=44.08  Aligned_cols=82  Identities=24%  Similarity=0.311  Sum_probs=52.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .+++++|+|+ +++|..++..+...|++ +++++++.++.+.+    ++.+... .+..+- +.+...+.+.++.+.. .
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-~   86 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGAT-IVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEV-G   86 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhC-C
Confidence            5688999996 89999999888889996 88888887765433    2234322 222222 2223333344443222 4


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.++|.
T Consensus        87 ~id~li~~ag~   97 (265)
T PRK07097         87 VIDILVNNAGI   97 (265)
T ss_pred             CCCEEEECCCC
Confidence            69999999984

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.67  E-value=0.026  Score=43.91  Aligned_cols=74  Identities=18%  Similarity=0.295  Sum_probs=54.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH--HcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEc
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK--KLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC  175 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  175 (216)
                      .++|+|+|.+|...++.+...|.. |++++.++++.+...  ++....+.. +..+   .+.++++   .-..+|+++-+
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~-Vv~Id~d~~~~~~~~~~~~~~~~v~g-d~t~---~~~L~~a---gi~~aD~vva~   73 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHN-VVLIDRDEERVEEFLADELDTHVVIG-DATD---EDVLEEA---GIDDADAVVAA   73 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCc-eEEEEcCHHHHHHHhhhhcceEEEEe-cCCC---HHHHHhc---CCCcCCEEEEe
Confidence            578899999999999999999995 999999999877633  365554433 2222   2234332   34679999999


Q ss_pred             CCCH
Q 048013          176 AGFN  179 (216)
Q Consensus       176 ~g~~  179 (216)
                      +++.
T Consensus        74 t~~d   77 (225)
T COG0569          74 TGND   77 (225)
T ss_pred             eCCC
Confidence            9983

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.66  E-value=0.016  Score=37.79  Aligned_cols=86  Identities=20%  Similarity=0.321  Sum_probs=53.6

Q ss_pred             EEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCE---EEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013          100 LIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADN---IVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus       100 lv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      |-+|+| .|..+..+++.-+. .++++|.+++..+.+++.....   ...-  +..+       + .....-+|+|+...
T Consensus         1 LdiG~G-~G~~~~~l~~~~~~-~v~~~D~~~~~~~~~~~~~~~~~~~~~~~--d~~~-------l-~~~~~sfD~v~~~~   68 (95)
T PF08241_consen    1 LDIGCG-TGRFAAALAKRGGA-SVTGIDISEEMLEQARKRLKNEGVSFRQG--DAED-------L-PFPDNSFDVVFSNS   68 (95)
T ss_dssp             EEET-T-TSHHHHHHHHTTTC-EEEEEES-HHHHHHHHHHTTTSTEEEEES--BTTS-------S-SS-TT-EEEEEEES
T ss_pred             CEecCc-CCHHHHHHHhccCC-EEEEEeCCHHHHHHHHhcccccCchheee--hHHh-------C-cccccccccccccc
Confidence            345776 47788888887344 6999999999888887644332   2221  1111       1 01245689988743


Q ss_pred             CC------HHHHHHHHHHhhcCCEEEE
Q 048013          177 GF------NKTMSTALSATRAGGKVCL  197 (216)
Q Consensus       177 g~------~~~~~~~~~~l~~~G~~v~  197 (216)
                      .-      ...++++.+.|+|+|++++
T Consensus        69 ~~~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   69 VLHHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence            32      3567899999999999874

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=96.65  E-value=0.032  Score=45.09  Aligned_cols=86  Identities=15%  Similarity=0.148  Sum_probs=55.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG  177 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  177 (216)
                      +|.|+|.|.+|...+..+...|.+ |++.+++.++.+.+.+.+....       .++.+.+        ...|+||.++.
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~~-v~~~d~~~~~~~~~~~~g~~~~-------~~~~e~~--------~~~d~vi~~vp   67 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGYS-LVVYDRNPEAVAEVIAAGAETA-------STAKAVA--------EQCDVIITMLP   67 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCe-EEEEcCCHHHHHHHHHCCCeec-------CCHHHHH--------hcCCEEEEeCC
Confidence            688999999999988888888885 8899999888877766654311       1111111        24788888877


Q ss_pred             CHHHHHHH-------HHHhhcCCEEEEec
Q 048013          178 FNKTMSTA-------LSATRAGGKVCLVG  199 (216)
Q Consensus       178 ~~~~~~~~-------~~~l~~~G~~v~~g  199 (216)
                      .....+..       ...++++-.++.++
T Consensus        68 ~~~~~~~v~~~~~~~~~~~~~g~iiid~s   96 (296)
T PRK11559         68 NSPHVKEVALGENGIIEGAKPGTVVIDMS   96 (296)
T ss_pred             CHHHHHHHHcCcchHhhcCCCCcEEEECC
Confidence            64433333       23344444455454

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=96.63  E-value=0.032  Score=43.60  Aligned_cols=81  Identities=26%  Similarity=0.373  Sum_probs=51.0

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCE-EEeCCC-CcccHHHHHHHHHHHcCCC
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADN-IVKVST-NLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~  168 (216)
                      ++++||.|+ |.+|..++..+...|++ |++++++.++.+.+..    .+... .+..+- +.+++.+.++++.+. ..+
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~~~   78 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGAN-VVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAE-FGG   78 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHh-cCC
Confidence            357999996 99999999998889994 8989998776654432    22221 122221 222333444444332 346


Q ss_pred             ccEEEEcCCC
Q 048013          169 IDVSFDCAGF  178 (216)
Q Consensus       169 ~d~vi~~~g~  178 (216)
                      +|++|.+.+.
T Consensus        79 ~d~vi~~a~~   88 (255)
T TIGR01963        79 LDILVNNAGI   88 (255)
T ss_pred             CCEEEECCCC
Confidence            8999988864

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.62  E-value=0.036  Score=43.01  Aligned_cols=82  Identities=20%  Similarity=0.334  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCCC-cccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVSTN-LQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~~-~~~~~~~~~~~~~~~~~  167 (216)
                      .+++++|.|+ |++|..++..+...|++ |+.++++.++.+..    +..+... .+..+-. ..+..+.++++.+ .-.
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~   83 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGVN-VGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKN-ELG   83 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHH-HcC
Confidence            3578999986 89999999988889994 88898887664432    2233222 2222221 2223333343322 224


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.++|.
T Consensus        84 ~id~vi~~ag~   94 (239)
T PRK07666         84 SIDILINNAGI   94 (239)
T ss_pred             CccEEEEcCcc
Confidence            79999998874

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=96.62  E-value=0.036  Score=47.49  Aligned_cols=104  Identities=20%  Similarity=0.274  Sum_probs=62.6

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHH----HHcCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVA----KKLGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ....++++++||-.|+|+ |..+..+++.++ ...|+++|.++++.+.+    +.+|...+.....   |..+ +.....
T Consensus       246 ~~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~---D~~~-~~~~~~  320 (434)
T PRK14901        246 PLLDPQPGEVILDACAAP-GGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAA---DSRN-LLELKP  320 (434)
T ss_pred             HHhCCCCcCEEEEeCCCC-chhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeC---Chhh-cccccc
Confidence            345678899999998754 445555666543 22699999999887765    4467765433222   2111 110000


Q ss_pred             HcCCCccEEEE---cCCC-------------------------HHHHHHHHHHhhcCCEEEE
Q 048013          164 AMGTGIDVSFD---CAGF-------------------------NKTMSTALSATRAGGKVCL  197 (216)
Q Consensus       164 ~~~~~~d~vi~---~~g~-------------------------~~~~~~~~~~l~~~G~~v~  197 (216)
                      .....||.|+-   |+|.                         ...+..+++.|+|+|+++.
T Consensus       321 ~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvy  382 (434)
T PRK14901        321 QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVY  382 (434)
T ss_pred             cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            01246999875   3431                         1346788899999998874

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=96.62  E-value=0.022  Score=43.68  Aligned_cols=104  Identities=23%  Similarity=0.284  Sum_probs=68.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHHH----HcCCCEEEeCCCCcccHHHHHHHHHHHc-C
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVAK----KLGADNIVKVSTNLQDIAEEVEKIQKAM-G  166 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~  166 (216)
                      ....++||-+|.+. |..++.+++.+.- .+++.++.+++..+.++    +.|....+.+  ...+..+.+.++.... .
T Consensus        43 ~~~~k~vLEIGt~~-GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~--~~gda~~~l~~l~~~~~~  119 (205)
T PF01596_consen   43 LTRPKRVLEIGTFT-GYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEV--IEGDALEVLPELANDGEE  119 (205)
T ss_dssp             HHT-SEEEEESTTT-SHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEE--EES-HHHHHHHHHHTTTT
T ss_pred             hcCCceEEEecccc-ccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEE--EEeccHhhHHHHHhccCC
Confidence            45668999999753 7788888887642 26999999998877764    4565432221  2245566666654322 2


Q ss_pred             CCccEEEEcCCC---HHHHHHHHHHhhcCCEEEEec
Q 048013          167 TGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       167 ~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      +.||.||--..-   ...+..++++|+++|.++.=.
T Consensus       120 ~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN  155 (205)
T PF01596_consen  120 GQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADN  155 (205)
T ss_dssp             TSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred             CceeEEEEcccccchhhHHHHHhhhccCCeEEEEcc
Confidence            479998754443   345678889999999988654

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=96.62  E-value=0.035  Score=43.20  Aligned_cols=82  Identities=18%  Similarity=0.223  Sum_probs=50.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .+++++|+|+ |.+|..+++.+...|++ |++++++.++...+    +..+... .+..+- +.++..+.++++.+. -.
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~   82 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGAE-VIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVED-FG   82 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH-hC
Confidence            4678999996 99999999988888985 88898886554332    2223221 222221 122333333333222 23


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.+++.
T Consensus        83 ~~d~vi~~ag~   93 (251)
T PRK12826         83 RLDILVANAGI   93 (251)
T ss_pred             CCCEEEECCCC
Confidence            69999999864

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=96.62  E-value=0.063  Score=45.33  Aligned_cols=104  Identities=20%  Similarity=0.269  Sum_probs=59.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHH-------HHHHcCCCEEEeCCCCcccHHHHHHHHHHHc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLS-------VAKKLGADNIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      ..+.+|+|+|+ |.+|..+++.+...|++ |++++++..+.+       ..+......++..+-.+.   +.+.++.+..
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~-V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~---~~l~~~~~~~  133 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGYN-VVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDA---DSLRKVLFSE  133 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEEechhhccccchhhHHhhhcCCceEEEeeCCCH---HHHHHHHHHh
Confidence            45678999996 99999999999889985 888888765421       111121112222111111   2233332111


Q ss_pred             CCCccEEEEcCCCH------------HHHHHHHHHhhcC--CEEEEeccC
Q 048013          166 GTGIDVSFDCAGFN------------KTMSTALSATRAG--GKVCLVGMG  201 (216)
Q Consensus       166 ~~~~d~vi~~~g~~------------~~~~~~~~~l~~~--G~~v~~g~~  201 (216)
                      +.++|+||+|++..            .....+++.+...  ++++.++..
T Consensus       134 ~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~  183 (390)
T PLN02657        134 GDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAI  183 (390)
T ss_pred             CCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence            23699999988641            1123445555444  478887743

>PRK09134 short chain dehydrogenase; Provisional

Probab=96.62  E-value=0.031  Score=44.02  Aligned_cols=82  Identities=16%  Similarity=0.213  Sum_probs=47.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChHHHHHH-HH---cCCCE-EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV-DDYRLSVA-KK---LGADN-IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~-~~~~~~~~-~~---~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||.|+ |++|..+++.+...|++ ++++.+ +.++.+.+ ++   .+... .+..+- +.++..+.+.++.+.. 
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~-   85 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGFD-VAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAAL-   85 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            4678999996 89999999988889986 655544 44443322 22   23322 122121 1222333333333222 


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      .++|++|.++|.
T Consensus        86 ~~iD~vi~~ag~   97 (258)
T PRK09134         86 GPITLLVNNASL   97 (258)
T ss_pred             CCCCEEEECCcC
Confidence            479999999874

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.61  E-value=0.015  Score=52.34  Aligned_cols=76  Identities=21%  Similarity=0.313  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChH---------------------HHHHHHHcCCCEEEeCCCCccc
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDY---------------------RLSVAKKLGADNIVKVSTNLQD  153 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~---------------------~~~~~~~~g~~~~~~~~~~~~~  153 (216)
                      .+++|+|+|+|+.|+.++..++..|++ |+++++.+.                     ..+.++++|++..++.... .+
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~-Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~-~~  386 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQ-VDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIG-RD  386 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCc-EEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccC-Cc
Confidence            478999999999999999999999996 888876652                     3456677887654442110 11


Q ss_pred             HHHHHHHHHHHcCCCccEEEEcCCC
Q 048013          154 IAEEVEKIQKAMGTGIDVSFDCAGF  178 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~d~vi~~~g~  178 (216)
                      .  .+.++    ..++|.+|.++|.
T Consensus       387 ~--~~~~l----~~~~DaV~latGa  405 (639)
T PRK12809        387 I--TFSDL----TSEYDAVFIGVGT  405 (639)
T ss_pred             C--CHHHH----HhcCCEEEEeCCC
Confidence            0  12222    1369999999996

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=96.61  E-value=0.042  Score=43.37  Aligned_cols=81  Identities=15%  Similarity=0.153  Sum_probs=49.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChHHHHHH-HH----cCCC-EEEeCCC-CcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVD-VDDYRLSVA-KK----LGAD-NIVKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~-~~~~~~~~~-~~----~g~~-~~~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      ++++++|.|+ +++|..+++.+...|++ |+.+. +++++.+.. ++    .+.. ..+..|- +.++..+.+.++.+..
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDF   85 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            5789999996 89999999999999996 66654 455443322 22    2332 1222222 2233444444443333


Q ss_pred             CCCccEEEEcCC
Q 048013          166 GTGIDVSFDCAG  177 (216)
Q Consensus       166 ~~~~d~vi~~~g  177 (216)
                       ..+|+++.++|
T Consensus        86 -g~id~lv~nAg   96 (260)
T PRK08416         86 -DRVDFFISNAI   96 (260)
T ss_pred             -CCccEEEECcc
Confidence             46999999885

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.61  E-value=0.16  Score=39.91  Aligned_cols=108  Identities=16%  Similarity=0.145  Sum_probs=63.0

Q ss_pred             CCCCEEEEEcCC---HHHHHHHHHHHHcCCCeEEEEcCC-----------hHHH----HHHHHcCCCE-EEeCC-CCccc
Q 048013           94 GPETNVLIMGSG---PIGLVTMLAARAFGAPRIVIVDVD-----------DYRL----SVAKKLGADN-IVKVS-TNLQD  153 (216)
Q Consensus        94 ~~~~~vlv~Gag---~~G~~~i~~a~~~g~~~vv~~~~~-----------~~~~----~~~~~~g~~~-~~~~~-~~~~~  153 (216)
                      -+++++||+|++   ++|..+++.+...|++ |+++.++           .++.    +.+++.+... .+..+ .+.++
T Consensus         4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~   82 (256)
T PRK12859          4 LKNKVAVVTGVSRLDGIGAAICKELAEAGAD-IFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDA   82 (256)
T ss_pred             cCCcEEEEECCCCCCChHHHHHHHHHHCCCe-EEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence            357899999973   8999999999999996 6665321           1111    2233345432 22222 12233


Q ss_pred             HHHHHHHHHHHcCCCccEEEEcCCCH-------------------------HHHHHHHHHhh--cCCEEEEeccCCC
Q 048013          154 IAEEVEKIQKAMGTGIDVSFDCAGFN-------------------------KTMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~d~vi~~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      ..+.+.++.+..+ .+|++|.++|..                         ...+..++.++  .+|+++.++....
T Consensus        83 i~~~~~~~~~~~g-~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~  158 (256)
T PRK12859         83 PKELLNKVTEQLG-YPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQF  158 (256)
T ss_pred             HHHHHHHHHHHcC-CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEccccc
Confidence            4444444443333 689999998741                         01244455664  3579999886554

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.60  E-value=0.042  Score=48.62  Aligned_cols=94  Identities=13%  Similarity=0.140  Sum_probs=65.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      ++++|.|.|.+|+..++.++..|.+ ++++|.++++.+.+++.+...+.- |..+   .+.+++.   .-..+|.++-++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~-vvvId~d~~~~~~~~~~g~~~i~G-D~~~---~~~L~~a---~i~~a~~viv~~  489 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIP-LVVIETSRTRVDELRERGIRAVLG-NAAN---EEIMQLA---HLDCARWLLLTI  489 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHHCCCeEEEc-CCCC---HHHHHhc---CccccCEEEEEc
Confidence            6789999999999999999999986 999999999999998887665543 2222   2223322   224689888887


Q ss_pred             CCHHH---HHHHHHHhhcCCEEEEe
Q 048013          177 GFNKT---MSTALSATRAGGKVCLV  198 (216)
Q Consensus       177 g~~~~---~~~~~~~l~~~G~~v~~  198 (216)
                      ++++.   .-...+...++.+++.-
T Consensus       490 ~~~~~~~~iv~~~~~~~~~~~iiar  514 (558)
T PRK10669        490 PNGYEAGEIVASAREKRPDIEIIAR  514 (558)
T ss_pred             CChHHHHHHHHHHHHHCCCCeEEEE
Confidence            76332   22334555666666644

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.59  E-value=0.11  Score=42.54  Aligned_cols=107  Identities=18%  Similarity=0.181  Sum_probs=67.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc----CCCEEEe--CCC-CcccHHHHHHHHHHH
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL----GADNIVK--VST-NLQDIAEEVEKIQKA  164 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~----g~~~~~~--~~~-~~~~~~~~~~~~~~~  164 (216)
                      -.+.+++|+|+ +++|..++..+...|++ |+...++.++-+.+ +++    ....++.  .|- +.....+...++. .
T Consensus        33 ~~~~~~vVTGansGIG~eta~~La~~Ga~-Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~-~  110 (314)
T KOG1208|consen   33 LSGKVALVTGATSGIGFETARELALRGAH-VVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFK-K  110 (314)
T ss_pred             CCCcEEEEECCCCchHHHHHHHHHhCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHH-h
Confidence            35578999997 89999999999999985 88888997654443 222    2233221  111 1122222333332 3


Q ss_pred             cCCCccEEEEcCCCH-----------------------HHHHHHHHHhhcC--CEEEEeccCC
Q 048013          165 MGTGIDVSFDCAGFN-----------------------KTMSTALSATRAG--GKVCLVGMGH  202 (216)
Q Consensus       165 ~~~~~d~vi~~~g~~-----------------------~~~~~~~~~l~~~--G~~v~~g~~~  202 (216)
                      ...+.|+.|+++|.-                       -..+.+++.|+..  +|+|.++...
T Consensus       111 ~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~  173 (314)
T KOG1208|consen  111 KEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSIL  173 (314)
T ss_pred             cCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCcc
Confidence            456899999998851                       1345666777655  7999887543

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.59  E-value=0.032  Score=45.89  Aligned_cols=94  Identities=13%  Similarity=0.110  Sum_probs=62.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEE----eCCC---CcccHHHHHHHHHHHcCCC
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIV----KVST---NLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~  168 (216)
                      ..+|.|+|+|.+|.+.+..+...|.+ |.+.++++++.+.+.+.+.....    ....   ...+    ..+.    -..
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~-V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~----~~e~----~~~   74 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVP-VRLWARRPEFAAALAAERENREYLPGVALPAELYPTAD----PEEA----LAG   74 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCC----HHHH----HcC
Confidence            35789999999999999998888985 88999988877766553211100    0000   0011    1121    135


Q ss_pred             ccEEEEcCCCHHHHHHHHHHhhcCCEEEEec
Q 048013          169 IDVSFDCAGFNKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       169 ~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      .|+||-++... .++.+++.++++-.++.+.
T Consensus        75 aD~Vi~~v~~~-~~~~v~~~l~~~~~vi~~~  104 (328)
T PRK14618         75 ADFAVVAVPSK-ALRETLAGLPRALGYVSCA  104 (328)
T ss_pred             CCEEEEECchH-HHHHHHHhcCcCCEEEEEe
Confidence            89999999994 4577778888876666553

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.58  E-value=0.016  Score=46.55  Aligned_cols=84  Identities=15%  Similarity=0.191  Sum_probs=59.4

Q ss_pred             HHHHcC-CCCCCEEEEEcCCH-HHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHH
Q 048013           87 ACRRAN-IGPETNVLIMGSGP-IGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        87 ~l~~~~-~~~~~~vlv~Gag~-~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      .++..+ --.|++++|+|.|. +|.-++.++...|+. |++..+..                     .+    +.+..  
T Consensus       148 ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gat-Vtv~~s~t---------------------~~----l~~~~--  199 (286)
T PRK14175        148 ILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNAS-VTILHSRS---------------------KD----MASYL--  199 (286)
T ss_pred             HHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCe-EEEEeCCc---------------------hh----HHHHH--
Confidence            334443 35789999999865 999999999999995 66665421                     11    11211  


Q ss_pred             cCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          165 MGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       165 ~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                        +..|++|.++|.+..+..  ..++++..++.+|.+.
T Consensus       200 --~~ADIVIsAvg~p~~i~~--~~vk~gavVIDvGi~~  233 (286)
T PRK14175        200 --KDADVIVSAVGKPGLVTK--DVVKEGAVIIDVGNTP  233 (286)
T ss_pred             --hhCCEEEECCCCCcccCH--HHcCCCcEEEEcCCCc
Confidence              258999999998666544  4578899999999765

>PRK07775 short chain dehydrogenase; Provisional

Probab=96.58  E-value=0.039  Score=43.99  Aligned_cols=82  Identities=18%  Similarity=0.206  Sum_probs=49.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCCC-cccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVSTN-LQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~~-~~~~~~~~~~~~~~~~~  167 (216)
                      +.++++|+|+ |.+|..+++.+...|++ |+++.++.++.+..    +..+... .+..+-. .++..+.+.++.+. -.
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~   86 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGFP-VALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEA-LG   86 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHh-cC
Confidence            3468999996 99999999988889994 87887776654432    2233322 1122221 22233333333222 24


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.++|.
T Consensus        87 ~id~vi~~Ag~   97 (274)
T PRK07775         87 EIEVLVSGAGD   97 (274)
T ss_pred             CCCEEEECCCc
Confidence            68999999875

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.58  E-value=0.015  Score=50.30  Aligned_cols=77  Identities=21%  Similarity=0.334  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh---------------------HHHHHHHHcCCCEEEeCCCCccc
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD---------------------YRLSVAKKLGADNIVKVSTNLQD  153 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~---------------------~~~~~~~~~g~~~~~~~~~~~~~  153 (216)
                      .+++|+|+|+|+.|+.++..++..|.+ |+++++.+                     ...+.++++|.+...+... ..+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v-~~~  217 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEV-GRD  217 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEe-CCc
Confidence            578999999999999999999999996 77787653                     2345667788765433111 011


Q ss_pred             HHHHHHHHHHHcCCCccEEEEcCCCH
Q 048013          154 IAEEVEKIQKAMGTGIDVSFDCAGFN  179 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~d~vi~~~g~~  179 (216)
                      .  .+.++.    .++|.+|.++|..
T Consensus       218 ~--~~~~~~----~~~D~vilAtGa~  237 (467)
T TIGR01318       218 I--SLDDLL----EDYDAVFLGVGTY  237 (467)
T ss_pred             c--CHHHHH----hcCCEEEEEeCCC
Confidence            1  112221    2699999999973

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=96.56  E-value=0.048  Score=39.89  Aligned_cols=87  Identities=17%  Similarity=0.221  Sum_probs=54.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChH-HHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDY-RLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      .+++|.|+|.|.-|++.++-++-.|.+ |++..++.. ..+.+++-|....        +..+.+        ...|+|+
T Consensus         3 ~~k~IAViGyGsQG~a~AlNLrDSG~~-V~Vglr~~s~s~~~A~~~Gf~v~--------~~~eAv--------~~aDvV~   65 (165)
T PF07991_consen    3 KGKTIAVIGYGSQGHAHALNLRDSGVN-VIVGLREGSASWEKAKADGFEVM--------SVAEAV--------KKADVVM   65 (165)
T ss_dssp             CTSEEEEES-SHHHHHHHHHHHHCC-E-EEEEE-TTCHHHHHHHHTT-ECC--------EHHHHH--------HC-SEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCCC-EEEEecCCCcCHHHHHHCCCeec--------cHHHHH--------hhCCEEE
Confidence            578999999999999999999999996 555555554 7788888887531        222222        2589999


Q ss_pred             EcCCCH---HHH-HHHHHHhhcCCEEEEe
Q 048013          174 DCAGFN---KTM-STALSATRAGGKVCLV  198 (216)
Q Consensus       174 ~~~g~~---~~~-~~~~~~l~~~G~~v~~  198 (216)
                      -.+.+.   +.+ +.....|+++-.+++.
T Consensus        66 ~L~PD~~q~~vy~~~I~p~l~~G~~L~fa   94 (165)
T PF07991_consen   66 LLLPDEVQPEVYEEEIAPNLKPGATLVFA   94 (165)
T ss_dssp             E-S-HHHHHHHHHHHHHHHS-TT-EEEES
T ss_pred             EeCChHHHHHHHHHHHHhhCCCCCEEEeC
Confidence            989872   233 4455577777766643

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=96.56  E-value=0.1  Score=42.30  Aligned_cols=43  Identities=19%  Similarity=0.158  Sum_probs=36.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGA  141 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~  141 (216)
                      +|.++|.|.+|...+..+...|.+ |++.+++.++.+.+.+.+.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~-V~~~dr~~~~~~~l~~~g~   44 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHD-CVGYDHDQDAVKAMKEDRT   44 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHcCC
Confidence            578899999999988888888885 8889999998887776553

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>TIGR02415 23BDH acetoin reductases

Probab=96.56  E-value=0.028  Score=43.99  Aligned_cols=80  Identities=16%  Similarity=0.277  Sum_probs=49.7

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCCCc
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~  169 (216)
                      ++++|.|+ |++|..+++.+...|++ ++.+++++++.+.+    ++.+... .+..+- +.+...+.+.++.+.. .++
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~-~~i   78 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFA-VAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKF-GGF   78 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc-CCC
Confidence            46899986 99999999999999995 88888886654332    2233322 122111 2223333344443323 368


Q ss_pred             cEEEEcCCC
Q 048013          170 DVSFDCAGF  178 (216)
Q Consensus       170 d~vi~~~g~  178 (216)
                      |++|.++|.
T Consensus        79 d~vi~~ag~   87 (254)
T TIGR02415        79 DVMVNNAGV   87 (254)
T ss_pred             CEEEECCCc
Confidence            999999874

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.55  E-value=0.011  Score=43.80  Aligned_cols=44  Identities=27%  Similarity=0.336  Sum_probs=37.5

Q ss_pred             CCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc
Q 048013           95 PETNVLIMGSG-PIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL  139 (216)
Q Consensus        95 ~~~~vlv~Gag-~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~  139 (216)
                      .|..|++.|+| ++|..+++-+...|++ |+++.++++.+..+-+.
T Consensus         6 aG~~vlvTgagaGIG~~~v~~La~aGA~-ViAvaR~~a~L~sLV~e   50 (245)
T KOG1207|consen    6 AGVIVLVTGAGAGIGKEIVLSLAKAGAQ-VIAVARNEANLLSLVKE   50 (245)
T ss_pred             cceEEEeecccccccHHHHHHHHhcCCE-EEEEecCHHHHHHHHhh
Confidence            67889999974 8999999999999995 99999999988766443

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.55  E-value=0.038  Score=43.74  Aligned_cols=106  Identities=17%  Similarity=0.218  Sum_probs=63.8

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCC---hHHHHHH-HHcCCCEEEeCC-CCcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS---GPIGLVTMLAARAFGAPRIVIVDVD---DYRLSVA-KKLGADNIVKVS-TNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga---g~~G~~~i~~a~~~g~~~vv~~~~~---~~~~~~~-~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~  166 (216)
                      .+++++|.|+   +++|.++++.+...|++ |+.+++.   +++.+.+ ++++....+..| .+.++..+.+.++.+.. 
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-   82 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGAE-LAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHW-   82 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCCe-EEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHh-
Confidence            5788999983   58999999998889996 7666433   3333332 334433222222 22234444455544333 


Q ss_pred             CCccEEEEcCCCH---------------H---------------HHHHHHHHhhcCCEEEEeccCC
Q 048013          167 TGIDVSFDCAGFN---------------K---------------TMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       167 ~~~d~vi~~~g~~---------------~---------------~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +++|++++++|..               +               ..+.+++.|+.+|+++.++...
T Consensus        83 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~  148 (260)
T PRK06997         83 DGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLG  148 (260)
T ss_pred             CCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            4799999988631               0               1344556666678988887543

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=96.54  E-value=0.013  Score=46.20  Aligned_cols=96  Identities=18%  Similarity=0.172  Sum_probs=60.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCC---------C-EEEeCCCCcccHHHHHHHHHH
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGA---------D-NIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~---------~-~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      .+.++|||+|.|. |..+-.+++......+.+++.+++-.+.++++-.         . .++.     .|..+.+++   
T Consensus        75 ~~p~~VLiiGgG~-G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~-----~Dg~~~l~~---  145 (246)
T PF01564_consen   75 PNPKRVLIIGGGD-GGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIII-----GDGRKFLKE---  145 (246)
T ss_dssp             SST-EEEEEESTT-SHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEE-----STHHHHHHT---
T ss_pred             CCcCceEEEcCCC-hhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEE-----hhhHHHHHh---
Confidence            4689999998654 4455566665555679999999998888876421         1 1221     233333433   


Q ss_pred             HcCC-CccEEEE-cCC---------CHHHHHHHHHHhhcCCEEEEec
Q 048013          164 AMGT-GIDVSFD-CAG---------FNKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       164 ~~~~-~~d~vi~-~~g---------~~~~~~~~~~~l~~~G~~v~~g  199 (216)
                       ... .+|++|. ...         ..+.++.+.+.|+++|.++.-.
T Consensus       146 -~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  146 -TQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             -SSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -ccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence             344 8999874 433         1367889999999999998765

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.54  E-value=0.066  Score=40.73  Aligned_cols=93  Identities=22%  Similarity=0.212  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChH-------------------H----HHHHHHcCCCEEEeCCCCc
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDY-------------------R----LSVAKKLGADNIVKVSTNL  151 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~-------------------~----~~~~~~~g~~~~~~~~~~~  151 (216)
                      ...+|+|+|+|++|.-+++.+...|...+..+|.+.-                   |    .+.++++..+..+....  
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~--   97 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT--   97 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe--
Confidence            4577999999999999999999999998888875521                   1    12244555543322111  


Q ss_pred             ccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCC
Q 048013          152 QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGG  193 (216)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G  193 (216)
                      +...+...++    -.++|+|+++..+.+.....-+.+...+
T Consensus        98 ~~~~~~~~~~----~~~~dvVi~~~~~~~~~~~ln~~c~~~~  135 (197)
T cd01492          98 DDISEKPEEF----FSQFDVVVATELSRAELVKINELCRKLG  135 (197)
T ss_pred             cCccccHHHH----HhCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence            1111111121    2369999999988555444445555554

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.53  E-value=0.036  Score=49.66  Aligned_cols=95  Identities=16%  Similarity=0.167  Sum_probs=66.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEc
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC  175 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  175 (216)
                      .++++|.|.|.+|+.+++.++..|.+ ++++|.++++.+.+++.|....+- |..+.+   .+++   .+-...|.++-+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~~v~~~~~~g~~v~~G-Dat~~~---~L~~---agi~~A~~vvv~  471 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVK-MTVLDHDPDHIETLRKFGMKVFYG-DATRMD---LLES---AGAAKAEVLINA  471 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCC-EEEEECCHHHHHHHHhcCCeEEEE-eCCCHH---HHHh---cCCCcCCEEEEE
Confidence            36799999999999999999999996 999999999999998888764433 222222   2322   233568999999


Q ss_pred             CCCHHHHHHH---HHHhhcCCEEEEe
Q 048013          176 AGFNKTMSTA---LSATRAGGKVCLV  198 (216)
Q Consensus       176 ~g~~~~~~~~---~~~l~~~G~~v~~  198 (216)
                      +++++.....   .+.+.|+-+++.-
T Consensus       472 ~~d~~~n~~i~~~ar~~~p~~~iiaR  497 (621)
T PRK03562        472 IDDPQTSLQLVELVKEHFPHLQIIAR  497 (621)
T ss_pred             eCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            9985543333   3344566555543

>PRK08303 short chain dehydrogenase; Provisional

Probab=96.53  E-value=0.046  Score=44.47  Aligned_cols=81  Identities=17%  Similarity=0.245  Sum_probs=50.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh----------HHHH----HHHHcCCCE-EEeCC-CCcccHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDD----------YRLS----VAKKLGADN-IVKVS-TNLQDIAEE  157 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~----------~~~~----~~~~~g~~~-~~~~~-~~~~~~~~~  157 (216)
                      .+++++|.|+ +++|.++++.+...|++ |++++++.          ++.+    .++..+... .+..+ .+.++..+.
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~~-Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~   85 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGAT-VYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRAL   85 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence            4789999996 89999999999999995 88887763          2222    223334322 12211 122344444


Q ss_pred             HHHHHHHcCCCccEEEEcC-C
Q 048013          158 VEKIQKAMGTGIDVSFDCA-G  177 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~-g  177 (216)
                      +.++.+.. +++|++|+++ |
T Consensus        86 ~~~~~~~~-g~iDilVnnA~g  105 (305)
T PRK08303         86 VERIDREQ-GRLDILVNDIWG  105 (305)
T ss_pred             HHHHHHHc-CCccEEEECCcc
Confidence            45544333 3699999988 5

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=96.53  E-value=0.069  Score=42.04  Aligned_cols=101  Identities=20%  Similarity=0.294  Sum_probs=64.2

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCC-EEEeCCCCcccHHHHHHHHHHHcCC
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGAD-NIVKVSTNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~  167 (216)
                      +.....++.+||.+|+|. |..+..+++ .|. .++++|.+++.++.+++.... ..+.     .+.    .++. ....
T Consensus        36 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~~D~s~~~l~~a~~~~~~~~~~~-----~d~----~~~~-~~~~  102 (251)
T PRK10258         36 AMLPQRKFTHVLDAGCGP-GWMSRYWRE-RGS-QVTALDLSPPMLAQARQKDAADHYLA-----GDI----ESLP-LATA  102 (251)
T ss_pred             HhcCccCCCeEEEeeCCC-CHHHHHHHH-cCC-eEEEEECCHHHHHHHHhhCCCCCEEE-----cCc----ccCc-CCCC
Confidence            333444678899999875 655555554 566 599999999888887664322 1111     111    1110 1234


Q ss_pred             CccEEEEcCCC------HHHHHHHHHHhhcCCEEEEeccCC
Q 048013          168 GIDVSFDCAGF------NKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       168 ~~d~vi~~~g~------~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      .||+|+....-      ...+..+.+.|+|+|.++......
T Consensus       103 ~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~  143 (251)
T PRK10258        103 TFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQ  143 (251)
T ss_pred             cEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            69999975432      245788899999999998775433

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=96.52  E-value=0.027  Score=40.76  Aligned_cols=98  Identities=24%  Similarity=0.415  Sum_probs=63.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHc--CCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHcCC
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAF--GAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~--g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (216)
                      +.+.+||-+|+|. |.....+++..  +. .++.+|.+++..+.+++    ++...+..+..   ++.+ +.+   ....
T Consensus         2 ~~~~~iLDlGcG~-G~~~~~l~~~~~~~~-~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~---d~~~-l~~---~~~~   72 (152)
T PF13847_consen    2 KSNKKILDLGCGT-GRLLIQLAKELNPGA-KIIGVDISEEMIEYAKKRAKELGLDNIEFIQG---DIED-LPQ---ELEE   72 (152)
T ss_dssp             TTTSEEEEET-TT-SHHHHHHHHHSTTTS-EEEEEESSHHHHHHHHHHHHHTTSTTEEEEES---BTTC-GCG---CSST
T ss_pred             CCCCEEEEecCcC-cHHHHHHHHhcCCCC-EEEEEECcHHHHHHhhcccccccccccceEEe---ehhc-ccc---ccCC
Confidence            4678899999864 66777777544  44 69999999988777654    56653322212   2111 110   0015


Q ss_pred             CccEEEEcCC-----C-HHHHHHHHHHhhcCCEEEEecc
Q 048013          168 GIDVSFDCAG-----F-NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       168 ~~d~vi~~~g-----~-~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      .+|+|+....     . ...++.+.+.|+++|+++..-.
T Consensus        73 ~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~  111 (152)
T PF13847_consen   73 KFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDP  111 (152)
T ss_dssp             TEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence            7999998632     2 2467889999999999886653

...

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.50  E-value=0.055  Score=46.09  Aligned_cols=97  Identities=18%  Similarity=0.187  Sum_probs=61.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHH-------HcCCCc
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQK-------AMGTGI  169 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  169 (216)
                      .+|.|+|.|-+|..++..+...|.+ |+++|+++++.+.+.. |....     ...+..+.+.+..+       +.-...
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~-V~~~D~~~~~v~~l~~-g~~~~-----~e~~l~~~l~~~~~~g~l~~~~~~~~a   76 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQ-VIGVDINQHAVDTINR-GEIHI-----VEPDLDMVVKTAVEGGYLRATTTPEPA   76 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCE-EEEEeCCHHHHHHHHC-CCCCc-----CCCCHHHHHHHHhhcCceeeecccccC
Confidence            5789999999999988888888985 9999999998887543 33211     12333333332211       012368


Q ss_pred             cEEEEcCCCH---------HHHH----HHHHHhhcCCEEEEecc
Q 048013          170 DVSFDCAGFN---------KTMS----TALSATRAGGKVCLVGM  200 (216)
Q Consensus       170 d~vi~~~g~~---------~~~~----~~~~~l~~~G~~v~~g~  200 (216)
                      |++|-|++.+         ..+.    ...+.++++..++..+.
T Consensus        77 Dvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST  120 (415)
T PRK11064         77 DAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST  120 (415)
T ss_pred             CEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence            9999999974         2333    33444555555555553

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=96.50  E-value=0.0093  Score=42.01  Aligned_cols=80  Identities=18%  Similarity=0.188  Sum_probs=48.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE-cCChHHHHHHHH-cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIV-DVDDYRLSVAKK-LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~-~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      .-+|-|+|+|.+|......++..|.. |..+ .++.++.+.+.. ++.....+..           +    .-...|++|
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~-v~~v~srs~~sa~~a~~~~~~~~~~~~~-----------~----~~~~aDlv~   73 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHE-VVGVYSRSPASAERAAAFIGAGAILDLE-----------E----ILRDADLVF   73 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSE-EEEESSCHH-HHHHHHC--TT-----TT-----------G----GGCC-SEEE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCe-EEEEEeCCcccccccccccccccccccc-----------c----ccccCCEEE
Confidence            35789999999999999999999985 6665 566656666654 3433322211           1    124689999


Q ss_pred             EcCCCHHHHHHHHHHhhcC
Q 048013          174 DCAGFNKTMSTALSATRAG  192 (216)
Q Consensus       174 ~~~g~~~~~~~~~~~l~~~  192 (216)
                      -++.+ +.+..+++.|...
T Consensus        74 iavpD-daI~~va~~La~~   91 (127)
T PF10727_consen   74 IAVPD-DAIAEVAEQLAQY   91 (127)
T ss_dssp             E-S-C-CHHHHHHHHHHCC
T ss_pred             EEech-HHHHHHHHHHHHh
Confidence            99999 5667777777644

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=96.50  E-value=0.21  Score=40.42  Aligned_cols=60  Identities=25%  Similarity=0.387  Sum_probs=45.7

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE--cCChHHHHHHHHcCCCEEEe
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIV--DVDDYRLSVAKKLGADNIVK  146 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~--~~~~~~~~~~~~~g~~~~~~  146 (216)
                      +.+...+++|.+|+=--+|++|++.+.+|+.+|++.++++  ..+.+++++++.+|+..+..
T Consensus        53 Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t  114 (300)
T COG0031          53 AEKRGLLKPGGTIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILT  114 (300)
T ss_pred             HHHcCCCCCCCEEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEc
Confidence            3344568999965543369999999999999999855555  45678888999999987665

>PRK08278 short chain dehydrogenase; Provisional

Probab=96.49  E-value=0.042  Score=43.81  Aligned_cols=82  Identities=24%  Similarity=0.298  Sum_probs=50.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHH-------HH----HHHHcCCCE-EEeCC-CCcccHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYR-------LS----VAKKLGADN-IVKVS-TNLQDIAEEVEK  160 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~-------~~----~~~~~g~~~-~~~~~-~~~~~~~~~~~~  160 (216)
                      .+++++|+|+ |++|..+++.+...|++ |++++++.+.       ++    .+++.+... .+..+ .+.+...+.+.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~   83 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGAN-IVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAK   83 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence            4678999996 89999999999889995 8888876532       11    122333332 11111 122333344444


Q ss_pred             HHHHcCCCccEEEEcCCC
Q 048013          161 IQKAMGTGIDVSFDCAGF  178 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~  178 (216)
                      +.+.. ..+|++|.++|.
T Consensus        84 ~~~~~-g~id~li~~ag~  100 (273)
T PRK08278         84 AVERF-GGIDICVNNASA  100 (273)
T ss_pred             HHHHh-CCCCEEEECCCC
Confidence            43323 369999999884

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.48  E-value=0.15  Score=41.45  Aligned_cols=43  Identities=19%  Similarity=0.138  Sum_probs=36.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGA  141 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~  141 (216)
                      +|.++|.|.+|...+.-+...|.+ +++.++++++.+.+.+.|.
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~-v~v~dr~~~~~~~~~~~g~   44 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHE-VVGYDRNPEAVEALAEEGA   44 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHCCC
Confidence            578899999999998888888985 8899999988877766554

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.48  E-value=0.01  Score=42.84  Aligned_cols=93  Identities=16%  Similarity=0.160  Sum_probs=55.0

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCC----CCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS----TNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      |+|+|+|++|.+.+..++..|.+ |..+.+.+ +.+.+++-|........    ......... .    .....+|++|-
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~D~viv   73 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHD-VTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAP-S----ADAGPYDLVIV   73 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCE-EEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSH-G----HHHSTESEEEE
T ss_pred             CEEECcCHHHHHHHHHHHHCCCc-eEEEEccc-cHHhhhheeEEEEecccceecccccccCcc-h----hccCCCcEEEE
Confidence            68899999999999888888885 88888877 66666654443211100    000000000 0    12457999999


Q ss_pred             cCCCHH---HHHHHHHHhhcCCEEEEe
Q 048013          175 CAGFNK---TMSTALSATRAGGKVCLV  198 (216)
Q Consensus       175 ~~g~~~---~~~~~~~~l~~~G~~v~~  198 (216)
                      |+-..+   .++.+.+.+.++..++.+
T Consensus        74 ~vKa~~~~~~l~~l~~~~~~~t~iv~~  100 (151)
T PF02558_consen   74 AVKAYQLEQALQSLKPYLDPNTTIVSL  100 (151)
T ss_dssp             -SSGGGHHHHHHHHCTGEETTEEEEEE
T ss_pred             EecccchHHHHHHHhhccCCCcEEEEE
Confidence            997632   333444445556566655

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK08223 hypothetical protein; Validated

Probab=96.47  E-value=0.076  Score=42.72  Aligned_cols=36  Identities=28%  Similarity=0.469  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      ...+|+|+|+|++|..+++.+.+.|..++..+|.+.
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            457899999999999999999999999888887663

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.47  E-value=0.018  Score=46.36  Aligned_cols=84  Identities=12%  Similarity=0.150  Sum_probs=58.2

Q ss_pred             HHHHcC-CCCCCEEEEEcCCH-HHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHH
Q 048013           87 ACRRAN-IGPETNVLIMGSGP-IGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        87 ~l~~~~-~~~~~~vlv~Gag~-~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      .++..+ .-.|++++|+|.|+ +|..++.++...|+ .|.+..+..+                     +    +.+.   
T Consensus       149 ~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t~---------------------~----L~~~---  199 (283)
T PRK14192        149 LLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRTQ---------------------N----LPEL---  199 (283)
T ss_pred             HHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCch---------------------h----HHHH---
Confidence            344433 35789999999876 99999999999999 5777754211                     1    1111   


Q ss_pred             cCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          165 MGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       165 ~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                       -+.+|++|+++|.+..+.  .+.++++..++.+|+..
T Consensus       200 -~~~aDIvI~AtG~~~~v~--~~~lk~gavViDvg~n~  234 (283)
T PRK14192        200 -VKQADIIVGAVGKPELIK--KDWIKQGAVVVDAGFHP  234 (283)
T ss_pred             -hccCCEEEEccCCCCcCC--HHHcCCCCEEEEEEEee
Confidence             136899999998755332  35588999999998654

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=96.47  E-value=0.069  Score=45.87  Aligned_cols=102  Identities=20%  Similarity=0.258  Sum_probs=62.3

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHHH----HcCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVAK----KLGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ....++++++||-.|+|+ |..++.+++.. +...|+++|.++++.+.++    ++|...+....   .|..+....   
T Consensus       244 ~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~---~D~~~~~~~---  316 (444)
T PRK14902        244 PALDPKGGDTVLDACAAP-GGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKA---LDARKVHEK---  316 (444)
T ss_pred             HHhCCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEe---CCcccccch---
Confidence            345678889999998754 44555666655 2236999999998876653    45665432221   122111111   


Q ss_pred             HcCCCccEEEEc---CCC-------------------------HHHHHHHHHHhhcCCEEEEe
Q 048013          164 AMGTGIDVSFDC---AGF-------------------------NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       164 ~~~~~~d~vi~~---~g~-------------------------~~~~~~~~~~l~~~G~~v~~  198 (216)
                       ....||.|+-.   +|.                         ...+..+++.|+|+|+++..
T Consensus       317 -~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys  378 (444)
T PRK14902        317 -FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS  378 (444)
T ss_pred             -hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence             12469998752   221                         13567788999999999843

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=96.46  E-value=0.028  Score=47.60  Aligned_cols=76  Identities=12%  Similarity=0.250  Sum_probs=47.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCC-EEEeCCCCcccHHHHHHHHHHHcCCCccE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGAD-NIVKVSTNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      .+++++|.|+ |++|.++++.+...|++ |+++++++++.+.. ...... ..+..+-  .+. +.+.+.   . .++|+
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~~-Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dv--sd~-~~v~~~---l-~~IDi  248 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGAK-VVALTSNSDKITLEINGEDLPVKTLHWQV--GQE-AALAEL---L-EKVDI  248 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHhhcCCCeEEEEeeC--CCH-HHHHHH---h-CCCCE
Confidence            4789999996 99999999988889995 88888877655332 211111 1221111  121 123322   1 36999


Q ss_pred             EEEcCCC
Q 048013          172 SFDCAGF  178 (216)
Q Consensus       172 vi~~~g~  178 (216)
                      +|.++|.
T Consensus       249 LInnAGi  255 (406)
T PRK07424        249 LIINHGI  255 (406)
T ss_pred             EEECCCc
Confidence            9998874

>PRK07102 short chain dehydrogenase; Provisional

Probab=96.45  E-value=0.035  Score=43.22  Aligned_cols=38  Identities=26%  Similarity=0.300  Sum_probs=32.0

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHH
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSV  135 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~  135 (216)
                      ++++|+|+ |++|..+++.+...|++ |+++++++++.+.
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~-Vi~~~r~~~~~~~   40 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGAR-LYLAARDVERLER   40 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCE-EEEEeCCHHHHHH
Confidence            57899986 99999999999989985 8999998876543

>PRK06436 glycerate dehydrogenase; Provisional

Probab=96.45  E-value=0.017  Score=46.95  Aligned_cols=84  Identities=26%  Similarity=0.247  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .++++.|+|.|.+|..+++.++.+|++ |++.+++...      .+....  +    .+    +.++.    ...|+|+.
T Consensus       121 ~gktvgIiG~G~IG~~vA~~l~afG~~-V~~~~r~~~~------~~~~~~--~----~~----l~ell----~~aDiv~~  179 (303)
T PRK06436        121 YNKSLGILGYGGIGRRVALLAKAFGMN-IYAYTRSYVN------DGISSI--Y----ME----PEDIM----KKSDFVLI  179 (303)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCCCcc------cCcccc--c----CC----HHHHH----hhCCEEEE
Confidence            578999999999999999999999995 8999876321      111110  0    11    22221    24678777


Q ss_pred             cCCCHHHH-----HHHHHHhhcCCEEEEec
Q 048013          175 CAGFNKTM-----STALSATRAGGKVCLVG  199 (216)
Q Consensus       175 ~~g~~~~~-----~~~~~~l~~~G~~v~~g  199 (216)
                      +++..+..     ...+..|+++..++.+|
T Consensus       180 ~lp~t~~T~~li~~~~l~~mk~ga~lIN~s  209 (303)
T PRK06436        180 SLPLTDETRGMINSKMLSLFRKGLAIINVA  209 (303)
T ss_pred             CCCCCchhhcCcCHHHHhcCCCCeEEEECC
Confidence            77752221     45667777777777766

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.44  E-value=0.078  Score=44.43  Aligned_cols=35  Identities=29%  Similarity=0.526  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      ...+|+|+|+|++|..+++.+...|..+++.+|.+
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            45689999999999999999999999889998876

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=96.43  E-value=0.039  Score=43.07  Aligned_cols=80  Identities=26%  Similarity=0.268  Sum_probs=46.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChHHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCCC
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIV-DVDDYRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~-~~~~~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~  168 (216)
                      +++||.|+ |++|..+++.+...|++ ++++ .++.++.+..    +..+... .+..+- +..+..+.+.++.+. ..+
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~~~   80 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGWS-VGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSA-FGR   80 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHh-cCC
Confidence            57899996 89999999999889986 5544 4555544322    2233222 122211 222333334444322 246


Q ss_pred             ccEEEEcCCC
Q 048013          169 IDVSFDCAGF  178 (216)
Q Consensus       169 ~d~vi~~~g~  178 (216)
                      +|++|.++|.
T Consensus        81 id~li~~ag~   90 (248)
T PRK06947         81 LDALVNNAGI   90 (248)
T ss_pred             CCEEEECCcc
Confidence            9999999873

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.41  E-value=0.041  Score=45.11  Aligned_cols=38  Identities=26%  Similarity=0.198  Sum_probs=33.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHH
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV  135 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~  135 (216)
                      ++|.|+|+|.||...++.+...|++ |+..|.+++..+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~~~~~~   45 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAPGAEAA   45 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCHHHHHH
Confidence            6799999999999999999999995 9999998876543

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.41  E-value=0.044  Score=48.94  Aligned_cols=95  Identities=14%  Similarity=0.052  Sum_probs=67.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      ++++|.|.|.+|+..++.++..|.+ ++++|.|+++.+.+++.|...++- |..++   +.+++   .+-...|.++-++
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~~v~~~~~~g~~v~~G-Dat~~---~~L~~---agi~~A~~vv~~~  472 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMR-ITVLERDISAVNLMRKYGYKVYYG-DATQL---ELLRA---AGAEKAEAIVITC  472 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCC-EEEEECCHHHHHHHHhCCCeEEEe-eCCCH---HHHHh---cCCccCCEEEEEe
Confidence            5799999999999999999999996 999999999999999888765443 22222   22332   2335789999999


Q ss_pred             CCHHHHHHH---HHHhhcCCEEEEec
Q 048013          177 GFNKTMSTA---LSATRAGGKVCLVG  199 (216)
Q Consensus       177 g~~~~~~~~---~~~l~~~G~~v~~g  199 (216)
                      ++++.....   .+...|+-+++.-.
T Consensus       473 ~d~~~n~~i~~~~r~~~p~~~IiaRa  498 (601)
T PRK03659        473 NEPEDTMKIVELCQQHFPHLHILARA  498 (601)
T ss_pred             CCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence            985544333   34455676776543

>PRK12367 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.023  Score=44.68  Aligned_cols=75  Identities=19%  Similarity=0.226  Sum_probs=45.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh-HHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDD-YRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .+++++|.|+ |++|..+++.+...|++ |+++++++ +..+... .+....+..+-  .+.. .+.+.   . .++|++
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~~-Vi~~~r~~~~~~~~~~-~~~~~~~~~D~--~~~~-~~~~~---~-~~iDil   83 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGAK-VIGLTHSKINNSESND-ESPNEWIKWEC--GKEE-SLDKQ---L-ASLDVL   83 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCE-EEEEECCchhhhhhhc-cCCCeEEEeeC--CCHH-HHHHh---c-CCCCEE
Confidence            3588999996 89999999999889995 88888775 2222211 11112222111  1211 22221   2 369999


Q ss_pred             EEcCCC
Q 048013          173 FDCAGF  178 (216)
Q Consensus       173 i~~~g~  178 (216)
                      |+++|.
T Consensus        84 VnnAG~   89 (245)
T PRK12367         84 ILNHGI   89 (245)
T ss_pred             EECCcc
Confidence            999974

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.40  E-value=0.09  Score=43.35  Aligned_cols=96  Identities=15%  Similarity=0.180  Sum_probs=61.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChHHHHHH-HHc----CCCEEEeCCCCcccHHHHHHHHHHHcC
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARA-FGAPRIVIVDVDDYRLSVA-KKL----GADNIVKVSTNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~-~g~~~vv~~~~~~~~~~~~-~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      .+..++++|+|+|..|.+.+..+.. .+.+.|.+.+++.++.+.+ +++    +.. +..+    .++.+.+        
T Consensus       129 ~~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~-v~~~----~d~~~al--------  195 (330)
T PRK08291        129 REDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIP-VTVA----RDVHEAV--------  195 (330)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCce-EEEe----CCHHHHH--------
Confidence            4556789999999999887777664 6777899999998886654 333    332 1111    1222211        


Q ss_pred             CCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          167 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       167 ~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      ...|+|+.+++....+- -...++++-.+..+|...
T Consensus       196 ~~aDiVi~aT~s~~p~i-~~~~l~~g~~v~~vg~d~  230 (330)
T PRK08291        196 AGADIIVTTTPSEEPIL-KAEWLHPGLHVTAMGSDA  230 (330)
T ss_pred             ccCCEEEEeeCCCCcEe-cHHHcCCCceEEeeCCCC
Confidence            25899999998743221 113477877888887543

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=96.40  E-value=0.043  Score=45.03  Aligned_cols=87  Identities=20%  Similarity=0.294  Sum_probs=59.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .|+++.|+|.|.+|.++++.++.+|.+ |+..+++.. .+..++.+...+        ++    .++.    ...|++.-
T Consensus       145 ~gktvGIiG~GrIG~avA~r~~~Fgm~-v~y~~~~~~-~~~~~~~~~~y~--------~l----~ell----~~sDii~l  206 (324)
T COG1052         145 RGKTLGIIGLGRIGQAVARRLKGFGMK-VLYYDRSPN-PEAEKELGARYV--------DL----DELL----AESDIISL  206 (324)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCCCC-hHHHhhcCceec--------cH----HHHH----HhCCEEEE
Confidence            488999999999999999999999995 888888765 333344443321        11    1221    14777666


Q ss_pred             cCCC-HHH----HHHHHHHhhcCCEEEEec
Q 048013          175 CAGF-NKT----MSTALSATRAGGKVCLVG  199 (216)
Q Consensus       175 ~~g~-~~~----~~~~~~~l~~~G~~v~~g  199 (216)
                      ..+. ++.    -...+..|++++.+|..|
T Consensus       207 ~~Plt~~T~hLin~~~l~~mk~ga~lVNta  236 (324)
T COG1052         207 HCPLTPETRHLINAEELAKMKPGAILVNTA  236 (324)
T ss_pred             eCCCChHHhhhcCHHHHHhCCCCeEEEECC
Confidence            6554 221    156777888888888776

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=96.39  E-value=0.021  Score=46.81  Aligned_cols=95  Identities=21%  Similarity=0.228  Sum_probs=59.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc----CC-CEEEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL----GA-DNIVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~----g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      .++.+||-+|+|. |..+..+++ .|+ .|+++|.+++..+.+++.    +. ..+...   ..+.    .++. ...+.
T Consensus       130 ~~g~~ILDIGCG~-G~~s~~La~-~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~---~~da----e~l~-~~~~~  198 (322)
T PLN02396        130 FEGLKFIDIGCGG-GLLSEPLAR-MGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYL---CTTA----EKLA-DEGRK  198 (322)
T ss_pred             CCCCEEEEeeCCC-CHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEE---ecCH----HHhh-hccCC
Confidence            4677899999864 555555554 677 499999999988877542    11 111111   1122    1221 12457


Q ss_pred             ccEEEEcC-----CC-HHHHHHHHHHhhcCCEEEEec
Q 048013          169 IDVSFDCA-----GF-NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       169 ~d~vi~~~-----g~-~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ||+|+..-     .+ ...++.+.+.|+|+|.+++.-
T Consensus       199 FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist  235 (322)
T PLN02396        199 FDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLST  235 (322)
T ss_pred             CCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            99998532     22 356688889999999998653

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=96.39  E-value=0.03  Score=46.29  Aligned_cols=104  Identities=21%  Similarity=0.287  Sum_probs=64.9

Q ss_pred             HHHcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCC-CEEEeCCCCcccHHHHHHHHHHHc
Q 048013           88 CRRANI-GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGA-DNIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        88 l~~~~~-~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      ++...+ .++.+||-+|+|. |..+..+++..+...++++|.+++-++.+++... ..+..   ...+.    .++. ..
T Consensus       105 l~~~~l~~~~~~VLDLGcGt-G~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~---i~gD~----e~lp-~~  175 (340)
T PLN02490        105 LEPADLSDRNLKVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKI---IEGDA----EDLP-FP  175 (340)
T ss_pred             HhhcccCCCCCEEEEEecCC-cHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeE---EeccH----HhCC-CC
Confidence            333333 4678999999875 6677777777654469999999887777765321 11111   11121    1110 12


Q ss_pred             CCCccEEEEcCC-----C-HHHHHHHHHHhhcCCEEEEecc
Q 048013          166 GTGIDVSFDCAG-----F-NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       166 ~~~~d~vi~~~g-----~-~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      ...||+|+.+-.     + ...++++.+.|+|+|++++.+.
T Consensus       176 ~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~  216 (340)
T PLN02490        176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGP  216 (340)
T ss_pred             CCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence            346999887432     2 3466889999999999988764

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=96.39  E-value=0.024  Score=48.38  Aligned_cols=103  Identities=18%  Similarity=0.218  Sum_probs=62.0

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----HcCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KLGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      .....++++++||-.|+|+ |..+..+++..+-..|+++|.+++..+.++    .+|....+. ..   |..+ ...+  
T Consensus       237 ~~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~-~~---D~~~-~~~~--  308 (427)
T PRK10901        237 ATLLAPQNGERVLDACAAP-GGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVI-VG---DARD-PAQW--  308 (427)
T ss_pred             HHHcCCCCCCEEEEeCCCC-ChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEE-Ec---Cccc-chhh--
Confidence            3445678999999998764 445556666554236999999998876663    355542211 11   1111 1111  


Q ss_pred             HcCCCccEEEE---cCCC-------------------------HHHHHHHHHHhhcCCEEEEe
Q 048013          164 AMGTGIDVSFD---CAGF-------------------------NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       164 ~~~~~~d~vi~---~~g~-------------------------~~~~~~~~~~l~~~G~~v~~  198 (216)
                      .....||.|+-   |++.                         ...+..+++.|+|||+++..
T Consensus       309 ~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvys  371 (427)
T PRK10901        309 WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYA  371 (427)
T ss_pred             cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            01346999884   3321                         13567888899999998743

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=96.39  E-value=0.075  Score=44.91  Aligned_cols=36  Identities=33%  Similarity=0.503  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      ...+|+|+|+|++|..++..+...|..++..+|.+.
T Consensus        41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~   76 (392)
T PRK07878         41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV   76 (392)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence            456899999999999999999999999888887653

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.39  E-value=0.013  Score=47.19  Aligned_cols=95  Identities=20%  Similarity=0.195  Sum_probs=59.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCC----CEEEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGA----DNIVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      ..+++++|+|+|++|.+++..+...|+.++++++++.++.+.+ +.++.    ..+...    ++    +.+.    -..
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~----~~----~~~~----~~~  192 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAG----SD----LAAA----LAA  192 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEec----cc----hHhh----hCC
Confidence            3567899999999999999999999998899999998886644 33321    112111    11    1111    135


Q ss_pred             ccEEEEcCCCH----HHHHHHHHHhhcCCEEEEecc
Q 048013          169 IDVSFDCAGFN----KTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       169 ~d~vi~~~g~~----~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      +|+||+++..-    .........++++..++.+-.
T Consensus       193 aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY  228 (284)
T PRK12549        193 ADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVY  228 (284)
T ss_pred             CCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeee
Confidence            89999996530    000111234666666665544

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.38  E-value=0.16  Score=40.59  Aligned_cols=107  Identities=16%  Similarity=0.172  Sum_probs=64.5

Q ss_pred             HHHHHHHcC-CCCCCEEEEEcCCHHHHHHHHHHHHc----CC------CeEEEEcCC-----------hHHHHHHHHcCC
Q 048013           84 GVHACRRAN-IGPETNVLIMGSGPIGLVTMLAARAF----GA------PRIVIVDVD-----------DYRLSVAKKLGA  141 (216)
Q Consensus        84 a~~~l~~~~-~~~~~~vlv~Gag~~G~~~i~~a~~~----g~------~~vv~~~~~-----------~~~~~~~~~~g~  141 (216)
                      -.++++..+ --.+.+|++.|+|.-|..+++++...    |.      ++++.+|+.           +.+..+++....
T Consensus        12 llnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~   91 (279)
T cd05312          12 LLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEE   91 (279)
T ss_pred             HHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCc
Confidence            355665543 33567899999988887777777665    87      578888775           223333333111


Q ss_pred             CEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCH-HHHHHHHHHhh---cCCEEEEeccCCC
Q 048013          142 DNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFN-KTMSTALSATR---AGGKVCLVGMGHR  203 (216)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~~l~---~~G~~v~~g~~~~  203 (216)
                             ....++.+.++.+      +.|+.|.+++.. ...+..++.|.   +.=.++-++.+.+
T Consensus        92 -------~~~~~L~e~i~~v------~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~  144 (279)
T cd05312          92 -------KEGKSLLEVVKAV------KPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTS  144 (279)
T ss_pred             -------ccCCCHHHHHHhc------CCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence                   0123555555443      689999988632 34467777777   4445555555444

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=96.38  E-value=0.022  Score=41.67  Aligned_cols=95  Identities=19%  Similarity=0.282  Sum_probs=60.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHH-----HcCCCcc
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQK-----AMGTGID  170 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~d  170 (216)
                      .+|+|+|. |.+|.+.+++.++.++- |..+|.++...     .....++   ..+.+|-+.-+.+.+     ..+.++|
T Consensus         4 grVivYGGkGALGSacv~~Fkannyw-V~siDl~eNe~-----Ad~sI~V---~~~~swtEQe~~v~~~vg~sL~gekvD   74 (236)
T KOG4022|consen    4 GRVIVYGGKGALGSACVEFFKANNYW-VLSIDLSENEQ-----ADSSILV---DGNKSWTEQEQSVLEQVGSSLQGEKVD   74 (236)
T ss_pred             ceEEEEcCcchHhHHHHHHHHhcCeE-EEEEeeccccc-----ccceEEe---cCCcchhHHHHHHHHHHHHhhcccccc
Confidence            46889987 99999999999999984 77777664321     1122222   233444443332222     3578899


Q ss_pred             EEEEcCCCH--------H------------------HHHHHHHHhhcCCEEEEecc
Q 048013          171 VSFDCAGFN--------K------------------TMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       171 ~vi~~~g~~--------~------------------~~~~~~~~l~~~G~~v~~g~  200 (216)
                      .||...|+-        +                  ....+-..|+++|-+-+-|-
T Consensus        75 av~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGA  130 (236)
T KOG4022|consen   75 AVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGA  130 (236)
T ss_pred             eEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeeccc
Confidence            999988762        0                  11334457899998888774

>PRK07411 hypothetical protein; Validated

Probab=96.37  E-value=0.068  Score=45.12  Aligned_cols=36  Identities=39%  Similarity=0.496  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      ...+|+|+|+|++|..+++.+...|..++..+|.+.
T Consensus        37 ~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~   72 (390)
T PRK07411         37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV   72 (390)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            346899999999999999999999999888887653

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=96.36  E-value=0.18  Score=34.66  Aligned_cols=84  Identities=24%  Similarity=0.265  Sum_probs=56.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc--CCCeEEEEcCChHHHHH-HHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           98 NVLIMGSGPIGLVTMLAARAF--GAPRIVIVDVDDYRLSV-AKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~--g~~~vv~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      ++.|+|+|.+|......++..  +.+.+-+++.+.++.+. .++++.. .+.      ++.+.+.      ...+|+|+-
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~-~~~------~~~~ll~------~~~~D~V~I   68 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIP-VYT------DLEELLA------DEDVDAVII   68 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSE-EES------SHHHHHH------HTTESEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhccc-chh------HHHHHHH------hhcCCEEEE
Confidence            578899999998887666665  44334456888777665 4667777 322      2332222      236999999


Q ss_pred             cCCCHHHHHHHHHHhhcCCE
Q 048013          175 CAGFNKTMSTALSATRAGGK  194 (216)
Q Consensus       175 ~~g~~~~~~~~~~~l~~~G~  194 (216)
                      ++......+.+..+++.+-.
T Consensus        69 ~tp~~~h~~~~~~~l~~g~~   88 (120)
T PF01408_consen   69 ATPPSSHAEIAKKALEAGKH   88 (120)
T ss_dssp             ESSGGGHHHHHHHHHHTTSE
T ss_pred             ecCCcchHHHHHHHHHcCCE
Confidence            99987777777777776653

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.36  E-value=0.17  Score=41.08  Aligned_cols=32  Identities=22%  Similarity=0.166  Sum_probs=27.3

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEc
Q 048013           95 PETNVLIMGS---GPIGLVTMLAARAFGAPRIVIVD  127 (216)
Q Consensus        95 ~~~~vlv~Ga---g~~G~~~i~~a~~~g~~~vv~~~  127 (216)
                      .++++||+|+   .++|.++++.+...|++ |++.+
T Consensus         7 ~gk~alITGa~~~~GIG~a~A~~la~~Ga~-Vvv~~   41 (299)
T PRK06300          7 TGKIAFIAGIGDDQGYGWGIAKALAEAGAT-ILVGT   41 (299)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHCCCE-EEEEe
Confidence            5789999997   59999999999999996 66654

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=96.35  E-value=0.085  Score=43.34  Aligned_cols=97  Identities=22%  Similarity=0.220  Sum_probs=59.9

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH---HH-cCCC-EEEeCCCCcccHHHHHHHHHHHc
Q 048013           91 ANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA---KK-LGAD-NIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        91 ~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~---~~-~g~~-~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      ....++++||-+|+|. |..+..++.. |...|+++|.+..-....   ++ .+.. .+....   .+    +.++.  .
T Consensus       118 l~~l~g~~VLDIGCG~-G~~~~~la~~-g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~---~d----~e~lp--~  186 (322)
T PRK15068        118 LSPLKGRTVLDVGCGN-GYHMWRMLGA-GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLP---LG----IEQLP--A  186 (322)
T ss_pred             hCCCCCCEEEEeccCC-cHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEe---CC----HHHCC--C
Confidence            4445788999999875 7777777775 655699999887544322   22 2211 121111   11    12221  1


Q ss_pred             CCCccEEEEcCC-----C-HHHHHHHHHHhhcCCEEEEe
Q 048013          166 GTGIDVSFDCAG-----F-NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       166 ~~~~d~vi~~~g-----~-~~~~~~~~~~l~~~G~~v~~  198 (216)
                      ...||+|+..-.     + ...++.+.+.|+|+|++++-
T Consensus       187 ~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~  225 (322)
T PRK15068        187 LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLE  225 (322)
T ss_pred             cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence            456999997421     1 35678899999999999864

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.35  E-value=0.059  Score=43.58  Aligned_cols=94  Identities=15%  Similarity=0.167  Sum_probs=55.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG  177 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  177 (216)
                      +|.|+|+|.+|.+.+..+...|.+ |+.++++.++.+.+++.|...  . +...........+.. .. ..+|++|-++.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~-V~~~~r~~~~~~~~~~~g~~~--~-~~~~~~~~~~~~~~~-~~-~~~d~vila~k   75 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHD-VTLVARRGAHLDALNENGLRL--E-DGEITVPVLAADDPA-EL-GPQDLVILAVK   75 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCe-EEEEECChHHHHHHHHcCCcc--c-CCceeecccCCCChh-Hc-CCCCEEEEecc
Confidence            588999999999988888888875 888888777777666555421  0 000000000000110 11 57999999988


Q ss_pred             CHHHHHHHHHHh----hcCCEEEEe
Q 048013          178 FNKTMSTALSAT----RAGGKVCLV  198 (216)
Q Consensus       178 ~~~~~~~~~~~l----~~~G~~v~~  198 (216)
                      ... ...+++.+    .++..++.+
T Consensus        76 ~~~-~~~~~~~l~~~l~~~~~iv~~   99 (304)
T PRK06522         76 AYQ-LPAALPSLAPLLGPDTPVLFL   99 (304)
T ss_pred             ccc-HHHHHHHHhhhcCCCCEEEEe
Confidence            732 34444444    344555544

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.35  E-value=0.023  Score=45.73  Aligned_cols=43  Identities=21%  Similarity=0.366  Sum_probs=37.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA  136 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~  136 (216)
                      ..+++++|+|+|+.+.+++..+..+|++++.+++|+.++.+.+
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~L  167 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQAL  167 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHH
Confidence            4578899999999999999998889998899999998876654

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=96.35  E-value=0.062  Score=43.91  Aligned_cols=87  Identities=17%  Similarity=0.130  Sum_probs=59.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      -.+++|.|+|.|.+|...++.++.+|.+ |++.++.....+.++..|... .       +    +.++.    ...|+|+
T Consensus        14 LkgKtVGIIG~GsIG~amA~nL~d~G~~-ViV~~r~~~s~~~A~~~G~~v-~-------s----l~Eaa----k~ADVV~   76 (335)
T PRK13403         14 LQGKTVAVIGYGSQGHAQAQNLRDSGVE-VVVGVRPGKSFEVAKADGFEV-M-------S----VSEAV----RTAQVVQ   76 (335)
T ss_pred             hCcCEEEEEeEcHHHHHHHHHHHHCcCE-EEEEECcchhhHHHHHcCCEE-C-------C----HHHHH----hcCCEEE
Confidence            4678999999999999999999999996 777766555555666666531 1       1    22221    2589999


Q ss_pred             EcCCCHH---HH-HHHHHHhhcCCEEEE
Q 048013          174 DCAGFNK---TM-STALSATRAGGKVCL  197 (216)
Q Consensus       174 ~~~g~~~---~~-~~~~~~l~~~G~~v~  197 (216)
                      -+++.+.   .+ ...+..|+++..++.
T Consensus        77 llLPd~~t~~V~~~eil~~MK~GaiL~f  104 (335)
T PRK13403         77 MLLPDEQQAHVYKAEVEENLREGQMLLF  104 (335)
T ss_pred             EeCCChHHHHHHHHHHHhcCCCCCEEEE
Confidence            9998632   22 345666777765543

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=96.33  E-value=0.12  Score=42.48  Aligned_cols=101  Identities=13%  Similarity=0.101  Sum_probs=65.2

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChHHHHHH-HH---cCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARA-FGAPRIVIVDVDDYRLSVA-KK---LGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~-~g~~~vv~~~~~~~~~~~~-~~---~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      +....+...++.|+|+|..|...+..+.. ...+.|.+.+++.++.+.+ ++   ++.... ..    .+..+.+     
T Consensus       121 ~~La~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~-~~----~~~~eav-----  190 (325)
T TIGR02371       121 KYLARKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVR-AA----TDPREAV-----  190 (325)
T ss_pred             HHhCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEE-Ee----CCHHHHh-----
Confidence            44445567889999999999876655543 5667899999999886543 33   343211 11    1222222     


Q ss_pred             HcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          164 AMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                         ++.|+|+-|+.+.+.+ .....++|+-.+..+|...+
T Consensus       191 ---~~aDiVitaT~s~~P~-~~~~~l~~g~~v~~vGs~~p  226 (325)
T TIGR02371       191 ---EGCDILVTTTPSRKPV-VKADWVSEGTHINAIGADAP  226 (325)
T ss_pred             ---ccCCEEEEecCCCCcE-ecHHHcCCCCEEEecCCCCc
Confidence               3689999999763321 22456799999999996443

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	216
1e3j_A	352	Ketose Reductase (Sorbitol Dehydrogenase) From Silv		8e-54
3qe3_A	355	Sheep Liver Sorbitol Dehydrogenase Length = 355		5e-48
1pl7_A	356	Human Sorbitol Dehydrogenase (Apo) Length = 356		5e-48
1pl6_A	356	Human SdhNADHINHIBITOR COMPLEX Length = 356		9e-48
3m6i_A	363	L-Arabinitol 4-Dehydrogenase Length = 363		2e-35
4ej6_A	370	Crystal Structure Of A Putative Zinc-Binding Dehydr		7e-23
3gfb_A	350	L-Threonine Dehydrogenase (Tktdh) From The Hyperthe		6e-22
2dfv_A	347	Hyperthermophilic Threonine Dehydrogenase From Pyro		7e-22
2d8a_A	348	Crystal Structure Of Ph0655 From Pyrococcus Horikos		7e-22
4a2c_A	346	Crystal Structure Of Galactitol-1-Phosphate Dehydro		9e-21
2dq4_A	343	Crystal Structure Of Threonine 3-Dehydrogenase Leng		1e-18
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		5e-18
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		7e-18
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		6e-16
4eex_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		2e-15
4eez_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		2e-15
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		5e-14
2xaa_A	345	Alcohol Dehydrogenase Adh-'a' From Rhodococcus Rube		2e-13
2eer_A	347	Structural Study Of Project Id St2577 From Sulfolob		2e-13
4ilk_A	359	Crystal Structure Of Short Chain Alcohol Dehydrogen		3e-13
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		4e-13
1vj0_A	380	Crystal Structure Of Alcohol Dehydrogenase (Tm0436)		5e-13
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		1e-12
3cos_A	381	Crystal Structure Of Human Class Ii Alcohol Dehydro		4e-12
1ykf_A	352	Nadp-Dependent Alcohol Dehydrogenase From Thermoana		5e-12
2nvb_A	352	Contribution Of Pro275 To The Thermostability Of Th		6e-12
3fpl_A	351	Chimera Of Alcohol Dehydrogenase By Exchange Of The		2e-11
3uko_A	378	Crystal Structure Of S-Nitrosoglutathione Reductase		8e-11
3fsr_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		1e-10
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		1e-10
1e3l_A	376	P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase		1e-10
4dl9_A	396	Crystal Structure Of S-nitrosoglutathione Reductase		2e-10
3fpc_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		2e-10
1hdz_A	374	Three-Dimensional Structures Of Three Human Alcohol		2e-10
1hdx_A	374	Three-Dimensional Structures Of Three Human Alcohol		2e-10
1htb_A	374	Crystallization Of Human Beta3 Alcohol Dehydrogenas		2e-10
1hdy_A	374	Three-Dimensional Structures Of Three Human Alcohol		3e-10
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		3e-10
1r37_A	347	Alcohol Dehydrogenase From Sulfolobus Solfataricus		3e-10
1qv6_A	374	Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG		4e-10
3ftn_A	352	Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDRO		4e-10
1nto_A	347	N249y Mutant Of Alcohol Dehydrogenase From The Arch		5e-10
1ped_A	351	Bacterial Secondary Alcohol Dehydrogenase (Apo-Form		5e-10
3ip1_A	404	Structure Of Putative Alcohol Dehydrogenase (Tm_042		5e-10
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		6e-10
1mgo_A	374	Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L		7e-10
2b83_A	351	A Single Amino Acid Substitution In The Clostridium		7e-10
3i4c_A	347	Crystal Structure Of Sulfolobus Solfataricus Adh(Ss		1e-09
1axe_A	374	Crystal Structure Of The Active-Site Mutant Phe93->		1e-09
6adh_A	374	Structure Of Triclinic Ternary Complex Of Horse Liv		1e-09
3oq6_A	374	Horse Liver Alcohol Dehydrogenase A317c Mutant Comp		1e-09
1ee2_B	373	The Structure Of Steroid-Active Alcohol Dehydrogena		1e-09
1qlh_A	374	Horse Liver Alcohol Dehydrogenase Complexed To Nad		1e-09
1ee2_A	373	The Structure Of Steroid-Active Alcohol Dehydrogena		1e-09
1n8k_A	374	Horse Liver Alcohol Dehydrogenase Val292thr Mutant		1e-09
1ju9_A	374	Horse Liver Alcohol Dehydrogenase Val292ser Mutant		1e-09
1jqb_A	351	Alcohol Dehydrogenase From Clostridium Beijerinckii		2e-09
1jvb_A	347	Alcohol Dehydrogenase From The Archaeon Sulfolobus		2e-09
1a71_A	374	Ternary Complex Of An Active Site Double Mutant Of		3e-09
1axg_A	374	Crystal Structure Of The Val203->ala Mutant Of Live		4e-09
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		4e-09
1h2b_A	359	Crystal Structure Of The Alcohol Dehydrogenase From		5e-09
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		7e-09
2fzw_A	373	Structure Of The Binary Complex Of The E67l Mutant		8e-09
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		9e-09
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		9e-09
1y9a_A	360	Alcohol Dehydrogenase From Entamoeba Histolotica In		3e-08
2oui_A	360	D275p Mutant Of Alcohol Dehydrogenase From Protozoa		4e-08
1cdo_A	374	Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co		4e-07
1wly_A	333	Crystal Structure Of 2-haloacrylate Reductase Lengt		8e-07
2dph_A	398	Crystal Structure Of Formaldehyde Dismutase Length		4e-06
1yqd_A	366	Sinapyl Alcohol Dehydrogenase Complexed With Nadp+		1e-05
1p0c_A	373	Crystal Structure Of The Nadp(H)-Dependent Vertebra		1e-05
1d1t_A	373	Mutant Of Human Sigma Alcohol Dehydrogenase With Le		1e-05
1agn_A	373	X-Ray Structure Of Human Sigma Alcohol Dehydrogenas		2e-05
1kol_A	398	Crystal Structure Of Formaldehyde Dehydrogenase Len		4e-05
3qwa_A	334	Crystal Structure Of Saccharomyces Cerevisiae Zeta-		8e-05

>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly Length = 352

Iteration: 1
 Score =  206 bits (524), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 109/214 (50%), Positives = 144/214 (67%), Gaps = 1/214 (0%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           KVG  VK L  GDRVA+EPG+ C +C +CK G+YNLCP+     +PP  G LA   VH A
Sbjct: 74  KVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAA 133
Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
           D C KLPDNVSLEEGA+ EPLSVGVHACRRA +   T VL++G+GPIGLV++LAA+A+GA
Sbjct: 134 DFCHKLPDNVSLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA 193
Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
             +V       RL VAK  GAD  + V    ++ +  +E+I+ A+G   +V+ DC+G  K
Sbjct: 194 -FVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEK 252
Query: 181 TMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
            ++  ++ TR GG + LVGMG + +TVPL  A A
Sbjct: 253 CITIGINITRTGGTLMLVGMGSQMVTVPLVNACA 286

>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355

Iteration: 1
 Score =  187 bits (474), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 99/214 (46%), Positives = 142/214 (66%), Gaps = 4/214 (1%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           KVGS V+ L PGDRVA++PG      ++CK GRYNL P      +PP  G L     H A
Sbjct: 76  KVGSLVRHLQPGDRVAIQPGAPRQTDEFCKIGRYNLSPTIFFCATPPDDGNLCRFYKHNA 135
Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
           + C+KLPDNV+ EEGA+ EPLSVG+HACRRA +     VL+ G+GPIGLV +LAA+A GA
Sbjct: 136 NFCYKLPDNVTFEEGALIEPLSVGIHACRRAGVTLGNKVLVCGAGPIGLVNLLAAKAMGA 195
Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGFN 179
            ++V+ D+   RLS AK++GAD I+++S  + ++IA++VE +   +G+  +V+ +C G  
Sbjct: 196 AQVVVTDLSASRLSKAKEVGADFILEISNESPEEIAKKVEGL---LGSKPEVTIECTGVE 252
Query: 180 KTMSTALSATRAGGKVCLVGMGHREMTVPLTPAA 213
            ++   + AT +GG + LVG+G    +VPL  AA
Sbjct: 253 TSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAA 286

>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo) Length = 356

Iteration: 1
 Score =  187 bits (474), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 101/214 (47%), Positives = 138/214 (64%), Gaps = 4/214 (1%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           KVGS VK L PGDRVA+EPG      ++CK GRYNL P      +PP  G L     H A
Sbjct: 77  KVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNA 136
Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
             C+KLPDNV+ EEGA+ EPLSVG+HACRR  +     VL+ G+GPIG+VT+L A+A GA
Sbjct: 137 AFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGA 196
Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGFN 179
            ++V+ D+   RLS AK++GAD ++++S  + Q+IA +VE     +G   +V+ +C G  
Sbjct: 197 AQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVE---GQLGCKPEVTIECTGAE 253
Query: 180 KTMSTALSATRAGGKVCLVGMGHREMTVPLTPAA 213
            ++   + ATR+GG + LVG+G    TVPL  AA
Sbjct: 254 ASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAA 287

>pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX Length = 356

Iteration: 1
 Score =  186 bits (472), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 101/214 (47%), Positives = 137/214 (64%), Gaps = 4/214 (1%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           KVGS VK L PGDRVA+EPG      ++CK GRYNL P      +PP  G L     H A
Sbjct: 77  KVGSSVKHLKPGDRVAIEPGAPRENDEFCKXGRYNLSPSIFFCATPPDDGNLCRFYKHNA 136
Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
             C+KLPDNV+ EEGA+ EPLSVG+HACRR  +     VL+ G+GPIG VT+L A+A GA
Sbjct: 137 AFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGXVTLLVAKAXGA 196
Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGFN 179
            ++V+ D+   RLS AK++GAD ++++S  + Q+IA +VE     +G   +V+ +C G  
Sbjct: 197 AQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVE---GQLGCKPEVTIECTGAE 253
Query: 180 KTMSTALSATRAGGKVCLVGMGHREMTVPLTPAA 213
            ++   + ATR+GG + LVG+G    TVPL  AA
Sbjct: 254 ASIQAGIYATRSGGTLVLVGLGSEXTTVPLLHAA 287

>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase Length = 363

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/214 (41%), Positives = 126/214 (58%), Gaps = 5/214 (2%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD 61
           V   VK++  GDRVA+EP + C  C+ C  GRYN C     L +PPV G L   V HPA 
Sbjct: 87  VHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAV 146
Query: 62  LCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAP 121
            C K+  N+S E GAM EPLSV +   +RA +     VLI G+GPIGL+TML A+A GA 
Sbjct: 147 WCHKI-GNMSYENGAMLEPLSVALAGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGAC 205
Query: 122 RIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGID--VSFDCAGFN 179
            +VI D+D+ RL  AK++  + +      L    E  +KI ++ G GI+  V+ +C G  
Sbjct: 206 PLVITDIDEGRLKFAKEICPEVVTHKVERL-SAEESAKKIVESFG-GIEPAVALECTGVE 263
Query: 180 KTMSTALSATRAGGKVCLVGMGHREMTVPLTPAA 213
            +++ A+ A + GGKV ++G+G  E+ +P   A+
Sbjct: 264 SSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRAS 297

>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 Length = 370

Iteration: 1
 Score =  103 bits (257), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVH--GCLANQVVH 58
           + GS V+ + PG R+  +P ISC +C  C+ GR NLC   + +G   +H  G  A  V+ 
Sbjct: 89  EAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIG---IHRDGGFAEYVLV 145
Query: 59  PADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAF 118
           P    F++P  +    GA CEPL+  +H    + I   + V I+G G IGL+T+  AR  
Sbjct: 146 PRKQAFEIPLTLDPVHGAFCEPLACCLHGVDLSGIKAGSTVAILGGGVIGLLTVQLARLA 205
Query: 119 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGF 178
           GA  +++      +  +A+++GA   V  S    D+ E +      +  G+DV  +CAG 
Sbjct: 206 GATTVILSTRQATKRRLAEEVGATATVDPSAG--DVVEAIAGPVGLVPGGVDVVIECAGV 263
Query: 179 NKTMSTALSATRAGGKVCLVGMGHREMTVPLTP 211
            +T+  +    +AGG V ++G+  +   V + P
Sbjct: 264 AETVKQSTRLAKAGGTVVILGVLPQGEKVEIEP 296

>pdb|3GFB|A Chain A, L-Threonine Dehydrogenase (Tktdh) From The Hyperthermophilic Archaeon Thermococcus Kodakaraensis Length = 350

Iteration: 1
 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 111/207 (53%), Gaps = 6/207 (2%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VG  V+ L  GD +++E  I C +C  CK  RY++C  +K  G   + G  A+  + PA
Sbjct: 75  EVGPGVEDLQVGDYISVETHIVCGKCYACKHNRYHVCQNTKIFGVD-MDGVFAHYAIVPA 133
Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
              +K P ++  E  A+ EPL   V       I   +  LI G+GP+GL+ +  A+A GA
Sbjct: 134 KNAWKNPKDMPPEYAALQEPLGNAVDTVLAGPIAGRST-LITGAGPLGLLGIAVAKASGA 192
Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
             +++ +  ++R  +AKK+GAD +  V+   +D  + V  I    G G++V  + +G  K
Sbjct: 193 YPVIVSEPSEFRRKLAKKVGADYV--VNPFEEDPVKFVMDITD--GAGVEVFLEFSGAPK 248
Query: 181 TMSTALSATRAGGKVCLVGMGHREMTV 207
            +   L A   GG+V L+G+  RE+T+
Sbjct: 249 ALEQGLKAVTPGGRVSLLGLFPREVTI 275

>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus Horikoshii Length = 347

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 111/207 (53%), Gaps = 6/207 (2%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           ++G  V+ +  GD V++E  I C +C  C+ G+Y++C  +K  G     G  A   V PA
Sbjct: 74  EIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVD-TDGVFAEYAVVPA 132
Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
              +K P ++  E   + EPL   V       I  ++ VLI G+GP+GL+ +  A+A GA
Sbjct: 133 QNIWKNPKSIPPEYATLQEPLGNAVDTVLAGPISGKS-VLITGAGPLGLLGIAVAKASGA 191
Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
             +++ +  D+R  +AKK+GAD +  ++   +D+ +EV  I    G G+DV  + +G  K
Sbjct: 192 YPVIVSEPSDFRRELAKKVGADYV--INPFEEDVVKEVXDITD--GNGVDVFLEFSGAPK 247
Query: 181 TMSTALSATRAGGKVCLVGMGHREMTV 207
            +   L A    G+V L+G+   ++T+
Sbjct: 248 ALEQGLQAVTPAGRVSLLGLYPGKVTI 274

>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3 Length = 348

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 111/207 (53%), Gaps = 6/207 (2%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           ++G  V+ +  GD V++E  I C +C  C+ G+Y++C  +K  G     G  A   V PA
Sbjct: 75  EIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVD-TDGVFAEYAVVPA 133
Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
              +K P ++  E   + EPL   V       I  ++ VLI G+GP+GL+ +  A+A GA
Sbjct: 134 QNIWKNPKSIPPEYATLQEPLGNAVDTVLAGPISGKS-VLITGAGPLGLLGIAVAKASGA 192
Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
             +++ +  D+R  +AKK+GAD +  ++   +D+ +EV  I    G G+DV  + +G  K
Sbjct: 193 YPVIVSEPSDFRRELAKKVGADYV--INPFEEDVVKEVXDITD--GNGVDVFLEFSGAPK 248
Query: 181 TMSTALSATRAGGKVCLVGMGHREMTV 207
            +   L A    G+V L+G+   ++T+
Sbjct: 249 ALEQGLQAVTPAGRVSLLGLYPGKVTI 275

>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase From Escherichia Coli Length = 346

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 102/208 (49%), Gaps = 13/208 (6%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD 61
           VGS V  L PGD VA  P + C+ C  C  G Y+ C +   +GS    G  A  +V    
Sbjct: 68  VGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRR-DGGFAEYIVVKRK 126
Query: 62  LCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAP 121
             F LP ++ +E+GA  EP++VG+HA   A      NV+I+G+G IGL+ +  A A GA 
Sbjct: 127 NVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAK 186
Query: 122 RIVIVDVDDYRLSVAKKLGADNIVKVST----NLQDIAEEVEKIQKAMGTGIDVSFDCAG 177
            +  +D+   +L++AK  GA      S      +Q +  E+   Q  + T        AG
Sbjct: 187 SVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILET--------AG 238
Query: 178 FNKTMSTALSATRAGGKVCLVGMGHREM 205
             +T+  A+       ++ LVG  H+++
Sbjct: 239 VPQTVELAVEIAGPHAQLALVGTLHQDL 266

>pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Length = 343

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 7/199 (3%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD 61
           VG  V+    GD V+LE  I C  C  C+ G Y++C  ++ LG     G  A  VV PA+
Sbjct: 72  VGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVD-RDGGFAEYVVVPAE 130
Query: 62  LCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAP 121
             +  P ++  E  A+ EP    VH     +     +VLI G+GPIGL+  +  RA GA 
Sbjct: 131 NAWVNPKDLPFEVAAILEPFGNAVHTVYAGSGVSGKSVLITGAGPIGLMAAMVVRASGAG 190
Query: 122 RIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKT 181
            I++ D + YRL+ A+   AD +V     L++  + +E +++  G+G++V  + +G    
Sbjct: 191 PILVSDPNPYRLAFARPY-ADRLVN---PLEE--DLLEVVRRVTGSGVEVLLEFSGNEAA 244
Query: 182 MSTALSATRAGGKVCLVGM 200
           +   L A   GG+  ++G+
Sbjct: 245 IHQGLMALIPGGEARILGI 263

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 100/213 (46%), Gaps = 14/213 (6%)
Query: 1   KVGSEVKTLVPGDRVALEPGI--SCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVH 58
           +VG  V  L  GDRV + P +  +C  CDYC  G+  LC   K  G   V G  A     
Sbjct: 69  EVGPGVTHLKVGDRVGI-PWLYSACGHCDYCLSGQETLCEHQKNAGY-SVDGGYAEYCRA 126
Query: 59  PADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAAR 116
            AD   K+PDN+S EE A   C  ++    A +     P   V I G G +G V +  A+
Sbjct: 127 AADYVVKIPDNLSFEEAAPIFCAGVTT-YKALKVTGAKPGEWVAIYGIGGLGHVAVQYAK 185
Query: 117 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA 176
           A G   +V VD+ D +L +AK+LGAD +V        + E+  K  K    G+  +   A
Sbjct: 186 AMGL-NVVAVDIGDEKLELAKELGADLVV------NPLKEDAAKFMKEKVGGVHAAVVTA 238
Query: 177 GFNKTMSTALSATRAGGKVCLVGMGHREMTVPL 209
                  +A ++ R GG   LVG+   EM +P+
Sbjct: 239 VSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPI 271

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 99/213 (46%), Gaps = 14/213 (6%)
Query: 1   KVGSEVKTLVPGDRVALEPGI--SCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVH 58
           +VG  V  L  GDRV + P +  +C  CDYC  G+  LC   K  G   V G  A     
Sbjct: 69  EVGPGVTHLKVGDRVGI-PWLYSACGHCDYCLSGQETLCEHQKNAGY-SVDGGYAEYCRA 126
Query: 59  PADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAAR 116
            AD   K+PDN+S EE A   C  ++    A +     P   V I G G  G V +  A+
Sbjct: 127 AADYVVKIPDNLSFEEAAPIFCAGVTT-YKALKVTGAKPGEWVAIYGIGGFGHVAVQYAK 185
Query: 117 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA 176
           A G   +V VD+ D +L +AK+LGAD +V        + E+  K  K    G+  +   A
Sbjct: 186 AMGL-NVVAVDIGDEKLELAKELGADLVV------NPLKEDAAKFMKEKVGGVHAAVVTA 238
Query: 177 GFNKTMSTALSATRAGGKVCLVGMGHREMTVPL 209
                  +A ++ R GG   LVG+   EM +P+
Sbjct: 239 VSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPI 271

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 97/212 (45%), Gaps = 11/212 (5%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD 61
           VG  V+   PGD V + PG+SC +C+ C  G  NLCP  + LG    HG  A  VV P  
Sbjct: 72  VGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGE-HRHGTYAEYVVLPEA 130
Query: 62  LCFKLPDNVSLEEGAM--CEPLSVGVHACRRANIGPETNVLIMGSGP-IGLVTMLAARAF 118
                P N+S EE A      L+       +  + P  +VL+M +G  + +  +  A+ F
Sbjct: 131 NLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLF 190
Query: 119 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGF 178
           GA R++     + +L  AK LGAD  V  +    D  +EV ++    G G D   D  G 
Sbjct: 191 GA-RVIATAGSEDKLRRAKALGADETVNYTH--PDWPKEVRRLTG--GKGADKVVDHTG- 244
Query: 179 NKTMSTALSATRAGGKVCLVGMGH-REMTVPL 209
                  + AT  GG++ + G     E T+P 
Sbjct: 245 ALYFEGVIKATANGGRIAIAGASSGYEGTLPF 276

>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Length = 348

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 109/214 (50%), Gaps = 13/214 (6%)
Query: 1   KVGSEVKTLVPGDRVALEPGIS-CWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHP 59
           ++G++V +L  GDRV++      C  C+YC  G    C E K  G   V G +A + +  
Sbjct: 68  EIGADVSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGYS-VDGGMAEEAIVV 126
Query: 60  ADLCFKLPDNVSLEEGAMCEPLSVGVH-ACRRANIGPETNVLIMGSGPIG-LVTMLAARA 117
           AD   K+PD +   E +      V  + A + + + P    +I G+G +G L    A   
Sbjct: 127 ADYAVKVPDGLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNV 186
Query: 118 FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI--AEEVEKIQKAMGTGIDVSFDC 175
           FGA +++ VD++  +L++AKK+GAD I+    N  D+   +E++KI    G G+  +  C
Sbjct: 187 FGA-KVIAVDINQDKLNLAKKIGADVII----NSGDVNPVDEIKKITG--GLGVQSAIVC 239
Query: 176 AGFNKTMSTALSATRAGGKVCLVGMGHREMTVPL 209
           A        A+++ +  GK+  V + + EMT+ +
Sbjct: 240 AVARIAFEQAVASLKPMGKMVAVALPNTEMTLSV 273

>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Variant Re1 Length = 348

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 109/214 (50%), Gaps = 13/214 (6%)
Query: 1   KVGSEVKTLVPGDRVALEPGIS-CWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHP 59
           ++G++V +L  GDRV++      C  C+YC  G    C E K  G   V G +A + +  
Sbjct: 68  EIGADVSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGYS-VDGGMAEEAIVV 126
Query: 60  ADLCFKLPDNVSLEEGAMCEPLSVGVH-ACRRANIGPETNVLIMGSGPIG-LVTMLAARA 117
           AD   K+PD +   E +      V  + A + + + P    +I G+G +G L    A   
Sbjct: 127 ADYAVKVPDGLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNV 186
Query: 118 FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI--AEEVEKIQKAMGTGIDVSFDC 175
           FGA +++ VD++  +L++AKK+GAD    V+ N  D+   +E++KI    G G+  +  C
Sbjct: 187 FGA-KVIAVDINQDKLNLAKKIGAD----VTINSGDVNPVDEIKKITG--GLGVQSAIVC 239
Query: 176 AGFNKTMSTALSATRAGGKVCLVGMGHREMTVPL 209
           A        A+++ +  GK+  V + + EMT+ +
Sbjct: 240 AVARIAFEQAVASLKPMGKMVAVAVPNTEMTLSV 273

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 94/203 (46%), Gaps = 12/203 (5%)
Query: 2   VGSEVKTLVPGDRVALEPGI--SCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHP 59
           VGS VK +  GDRV + P +  +C  C +C GG   LC E    G   V+G  A  VV  
Sbjct: 95  VGSGVKHVKEGDRVGI-PWLYTACGHCRHCLGGWETLCEEQLNTGYS-VNGGFAEYVVAD 152
Query: 60  ADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARA 117
            +    LP N+   E A  +C  ++V     +  +  P   V+I G G +G + +  ARA
Sbjct: 153 PNFVGHLPKNIDFNEIAPVLCAGVTV-YKGLKVTDTKPGDWVVISGIGGLGHMAVQYARA 211
Query: 118 FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG 177
            G   +  VD+DD +L +A++LGA     V+ N + +A+    I+K    G       A 
Sbjct: 212 MGL-NVAAVDIDDRKLDLARRLGA----TVTVNAKTVADPAAYIRKETDGGAQGVLVTAV 266
Query: 178 FNKTMSTALSATRAGGKVCLVGM 200
             K    AL     GG V L G+
Sbjct: 267 SPKAFEQALGMVARGGTVSLNGL 289

>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm 44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol Length = 345

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 98/228 (42%), Gaps = 21/228 (9%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESK-------GLGSPPVHGCLA 53
           ++G  V     GD VA+     C  C  C  GR N C  +        GLGSP   G +A
Sbjct: 70  ELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSP---GSMA 126
Query: 54  N-QVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRAN--IGPETNVLIMGSGPIGLV 110
              +V  A     + D   +    + +      HA  R    +GP +  +++G G +G V
Sbjct: 127 EYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHV 186
Query: 111 TMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGID 170
            +   RA  A R++ VD+DD RL++A+++GAD  VK      D   E+       G G  
Sbjct: 187 GIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTG-----GQGAT 241
Query: 171 VSFDCAGFNKTMSTALSATRAGGKVCLVGM---GHREMTVPLTPAAAS 215
             FD  G   T+ TA       G + +VG+    H ++   + P  AS
Sbjct: 242 AVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVGFFMIPFGAS 289

>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 7/202 (3%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHP- 59
           +VG EV     GD VA+ P      C YC+ G  +LC   + LG     G  A  V+ P 
Sbjct: 76  EVGDEVVGYSKGDLVAVNPWEGEGNCYYCRIGEEHLCDSPRWLGIN-YDGAYAEYVLVPH 134
Query: 60  ADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGP-IGLVTMLAARAF 118
               +KL    ++E   +         A R+A++ P   ++++G+G  +G + +  A+A 
Sbjct: 135 YKYLYKLRRLSAVEAAPLTCSGVTTYRAVRKASLDPSKTLVVIGAGGGLGTMAIQIAKAV 194
Query: 119 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGF 178
               I+ VDV +  L  AK+ GAD ++  S+  QD   E+ +I +  G G D   D    
Sbjct: 195 SGATIIGVDVREEALEAAKRAGADYVINASS--QDPVSEIRRITQ--GKGADAVIDLNNS 250
Query: 179 NKTMSTALSATRAGGKVCLVGM 200
            KT+S         GK  +VG+
Sbjct: 251 EKTLSIYPYVLAKQGKYVMVGL 272

>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase (rspb) From E. Coli Cft073 (efi Target Efi-506413) Complexed With Cofactor Nadh Length = 359

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVH--GCLANQVVHP 59
           VG  V++   G+RVA++P +SC  C  C  G+ N+C     LG   VH  G  +   V P
Sbjct: 88  VGEGVESARVGERVAVDPVVSCGHCYPCSIGKPNVCTTLAVLG---VHADGGFSEYAVVP 144
Query: 60  ADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAAR-AF 118
           A   +K+P+ V+ +   M EP ++  +            VL+ G+GPIGL  +   +  +
Sbjct: 145 AKNAWKIPEAVADQYAVMIEPFTIAANVTGHGQPTENDTVLVYGAGPIGLTIVQVLKGVY 204
Query: 119 GAPRIVIVDVDDYRLSVAKKLGAD 142
               +++ D  D RL  AK+ GAD
Sbjct: 205 NVKNVIVADRIDERLEKAKESGAD 228

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 97/212 (45%), Gaps = 14/212 (6%)
Query: 2   VGSEVKTLVPGDRVALEPGI--SCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHP 59
           VGS V  +  GDRV + P +  +C  C++C  G   LC   +  G   V+G  A  V+  
Sbjct: 76  VGSGVTRVKEGDRVGI-PWLYTACGCCEHCLTGWETLCESQQNTGYS-VNGGYAEYVLAD 133
Query: 60  ADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARA 117
            +    LP NV   E A  +C  ++V     ++ N  P   V I G G +G V +  ARA
Sbjct: 134 PNYVGILPKNVEFAEIAPILCAGVTV-YKGLKQTNARPGQWVAISGIGGLGHVAVQYARA 192
Query: 118 FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG 177
            G   +  +D+DD +L +A+KLGA   V          + VE IQ+ +G G       A 
Sbjct: 193 MGL-HVAAIDIDDAKLELARKLGASLTVNARQE-----DPVEAIQRDIG-GAHGVLVTAV 245
Query: 178 FNKTMSTALSATRAGGKVCLVGMGHREMTVPL 209
            N     A+   R GG + LVG+   +   P+
Sbjct: 246 SNSAFGQAIGMARRGGTIALVGLPPGDFPTPI 277

>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From Thermotoga Maritima At 2.00 A Resolution Length = 380

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 26/221 (11%)
Query: 7   KTLVPGDRVALEPGISCWQCDYCKGGRY-NLCPESKGLG-------SPPVHGCLANQVV- 57
           + L PGD +    GI+C +C +CK  +   LCP  K  G        P + GC ++ +V 
Sbjct: 96  ELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVL 155
Query: 58  HPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPET----NVLIMGSGPIGLVTML 113
            P     K+ +   L+  AM   +  G  A    +  PE+     V+I G+GP+GL  ++
Sbjct: 156 DPETDVLKVSEKDDLDVLAMA--MCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVV 213
Query: 114 AARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAM-----GTG 168
            AR+ GA  ++++     RL +A+++GAD    ++ N ++ +  VE+ +KA+     G G
Sbjct: 214 IARSLGAENVIVIAGSPNRLKLAEEIGAD----LTLNRRETS--VEERRKAIMDITHGRG 267
Query: 169 IDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPL 209
            D   +  G ++ +       R GG   + G+   +  VP 
Sbjct: 268 ADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPF 308

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 100/211 (47%), Gaps = 12/211 (5%)
Query: 2   VGSEVKTLVPGDRVALEPGIS-CWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           VGS V  +  GDRV +    S C  C++C  G   LC + +  G   V+G     VV   
Sbjct: 72  VGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYS-VNGGYGEYVVADP 130
Query: 61  DLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAF 118
           +    LPD V   E A  +C  ++V     +  +  P   V+I G G +G V +  ARA 
Sbjct: 131 NYVGLLPDKVGFVEIAPILCAGVTV-YKGLKVTDTRPGQWVVISGIGGLGHVAVQYARAM 189
Query: 119 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGF 178
           G  R+  VD+DD +L++A++LGA+    V+ N +D  +    +QK +G G       A  
Sbjct: 190 GL-RVAAVDIDDAKLNLARRLGAE----VAVNARD-TDPAAWLQKEIG-GAHGVLVTAVS 242
Query: 179 NKTMSTALSATRAGGKVCLVGMGHREMTVPL 209
            K  S A+   R GG + L G+   +   P+
Sbjct: 243 PKAFSQAIGMVRRGGTIALNGLPPGDFGTPI 273

>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 101/236 (42%), Gaps = 34/236 (14%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------- 46
           +G  V  + PGD+V       C +C +C     NLC +   L SP               
Sbjct: 79  IGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSPASDQQLMEDKTSRFT 138
Query: 47  ----PVHGCLANQ------VVHPADLCFKLPDNVSLEEGAMCE-PLSVGV-HACRRANIG 94
               PV+            VV   +L  K+ D+ +LE   +     S G   A   A + 
Sbjct: 139 CKGKPVYHFFGTSTFSQYTVVSDINLA-KIDDDANLERVCLLGCGFSTGYGAAINNAKVT 197
Query: 95  PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI 154
           P +   + G G +GL  ++  +A GA RI+ +D++  +   AK LGA + +      + I
Sbjct: 198 PGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKALGATDCLNPRDLHKPI 257
Query: 155 AEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCL---VGMGHREMTV 207
            E + ++ K    G+D + DCAG ++TM  AL  T AG   C    V  G + +TV
Sbjct: 258 QEVIIELTKG---GVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAAGSKGLTV 310

>pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium Brockii Length = 352

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 15/206 (7%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQV---- 56
           +VGSEVK   PGDRV +      W+    + G +     S G+ +      + + V    
Sbjct: 67  EVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQ---HSGGMLAGWKFSNVKDGVFGEF 123
Query: 57  --VHPADLCF-KLPDNVSLEEGAMC-EPLSVGVHACRRANIGPETNVLIMGSGPIGLVTM 112
             V+ AD+    LP  + LE   M  + ++ G H    A+I     V ++G GP+GL+ +
Sbjct: 124 FHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELADIELGATVAVLGIGPVGLMAV 183
Query: 113 LAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS 172
             A+  GA RI+ V      +  AK  GA +IV    N +D   E + +    G G+D +
Sbjct: 184 AGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIV----NYKDGPIESQIMNLTEGKGVDAA 239
Query: 173 FDCAGFNKTMSTALSATRAGGKVCLV 198
               G    M+TA+   + GG +  V
Sbjct: 240 IIAGGNADIMATAVKIVKPGGTIANV 265

>pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs) Length = 352

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 15/206 (7%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQV---- 56
           +VGSEVK   PGDRV +      W+    + G +     S G+ +      + + V    
Sbjct: 67  EVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQ---HSGGMLAGWKFSNVKDGVFGEF 123
Query: 57  --VHPADLCF-KLPDNVSLEEGAMC-EPLSVGVHACRRANIGPETNVLIMGSGPIGLVTM 112
             V+ AD+    LP  + LE   M  + ++ G H    A+I     V ++G GP+GL+ +
Sbjct: 124 FHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELADIELGATVAVLGIGPVGLMAV 183
Query: 113 LAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS 172
             A+  GA RI+ V      +  AK  GA +IV    N +D   E + +    G G+D +
Sbjct: 184 AGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIV----NYKDGPIESQIMNLTEGKGVDAA 239
Query: 173 FDCAGFNKTMSTALSATRAGGKVCLV 198
               G    M+TA+   + GG +  V
Sbjct: 240 IIAGGNADIMATAVKIVKPGGTIANV 265

>pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh Length = 351

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 15/206 (7%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQV---- 56
           +VGSEVK   PGDRV +      W+    + G       S G+ +        + V    
Sbjct: 67  EVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAG---FQQHSNGMLAGWKFSNFKDGVFGEY 123
Query: 57  --VHPADLCFK-LPDNVSLEEGAM-CEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTM 112
             V+ AD+    LP ++ LE   M  + ++ G H    A+I     V ++G GP+GL+ +
Sbjct: 124 FHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGAELADIELGATVAVLGIGPVGLMAV 183
Query: 113 LAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS 172
             A+  GA RI+ V      +  AK  GA +IV    N +D   E + +    G G+D +
Sbjct: 184 AGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIV----NYKDGPIESQIMNLTEGKGVDAA 239
Query: 173 FDCAGFNKTMSTALSATRAGGKVCLV 198
               G    M+TA+   + GG +  V
Sbjct: 240 IIAGGNADIMATAVKIVKPGGTIANV 265

>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 95/236 (40%), Gaps = 31/236 (13%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESK---GLG-------------S 45
           VG  V  +  GD V       C +C +CK G+ NLC + +   G+G              
Sbjct: 77  VGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNG 136
Query: 46  PPVHGCLANQ------VVHPADLCFKLPDNVSLEEGAMCE---PLSVGVHACRRANIGPE 96
            P++  +         VVH   +  K+     L++  +     P  +G      A + P 
Sbjct: 137 KPIYHFMGTSTFSQYTVVHDVSVA-KIDPTAPLDKVCLLGCGVPTGLGA-VWNTAKVEPG 194
Query: 97  TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAE 156
           +NV I G G +GL     A+  GA RI+ +D+D  +   AKK G +  V    + + I E
Sbjct: 195 SNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQE 254
Query: 157 EVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHREMTVPLTP 211
            +  +      G+D SF+C G    M  AL     G G   +VG+      +   P
Sbjct: 255 VIVDLTDG---GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRP 307

>pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 15/204 (7%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQV---- 56
           +VGSEVK   PGDRV +      W+    + G +     S G+ +      + + V    
Sbjct: 67  EVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQ---HSGGMLAGWKFSNVKDGVFGEF 123
Query: 57  --VHPADLCF-KLPDNVSLEEGAMC-EPLSVGVHACRRANIGPETNVLIMGSGPIGLVTM 112
             V+ AD+    LP  + LE   M  + ++ G H    A+I   ++V+++G G +GL+ +
Sbjct: 124 FHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELADIQMGSSVVVIGIGAVGLMGI 183
Query: 113 LAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS 172
             A+  GA RI+ V      +  AK  GA +I+        I ++V K+    G G+D  
Sbjct: 184 AGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNG--HIVDQVMKLTN--GKGVDRV 239
Query: 173 FDCAGFNKTMSTALSATRAGGKVC 196
               G ++T+S A+S  + GG + 
Sbjct: 240 IMAGGGSETLSQAVSMVKPGGIIS 263

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 98/236 (41%), Gaps = 34/236 (14%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQ------ 55
           VG  V    PGD+V       C +C  C     NLC + +    P +   L         
Sbjct: 76  VGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFT 135
Query: 56  -------------------VVHPADLCFKLPDNVSLEEGAM--CEPLSVGVHACRRANIG 94
                              VV  A+L  ++ D  +LE   +  C   S    A   A + 
Sbjct: 136 CKGRSIYHFMGVSSFSQYTVVSEANLA-RVDDEANLERVCLIGCGFSSGYGAAINTAKVT 194
Query: 95  PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI 154
           P +   + G G +GL  ++  +  GA RI+ +D++  +   AK LGA + +    N +++
Sbjct: 195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCL----NPREL 250
Query: 155 AEEVEK-IQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVC-LVGMGHREMTVP 208
            + V+  I +    G+D S DCAG  +T+  A+  T  G   C +VG    EMT+P
Sbjct: 251 DKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIP 306

>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 98/236 (41%), Gaps = 34/236 (14%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQ------ 55
           VG  V    PGD+V       C +C  C     NLC + +    P +   L         
Sbjct: 76  VGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFT 135
Query: 56  -------------------VVHPADLCFKLPDNVSLEEGAM--CEPLSVGVHACRRANIG 94
                              VV  A+L  ++ D  +LE   +  C   S    A   A + 
Sbjct: 136 CKGRSIYHFMGVSSFSQYTVVSEANLA-RVDDEANLERVCLIGCGFSSGYGAAINTAKVT 194
Query: 95  PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI 154
           P +   + G G +GL  ++  +  GA RI+ +D++  +   AK LGA + +    N +++
Sbjct: 195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCL----NPREL 250
Query: 155 AEEVEK-IQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVC-LVGMGHREMTVP 208
            + V+  I +    G+D S DCAG  +T+  A+  T  G   C +VG    EMT+P
Sbjct: 251 DKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIP 306

>pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 93/236 (39%), Gaps = 31/236 (13%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKG----------------LGS 45
           VG  V  + PGD V       C +C +CK G+ NLC + +                 +  
Sbjct: 95  VGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATGVGVMMNDRKSRFSING 154
Query: 46  PPVHGCLANQ------VVHPADLCFKLPDNVSLEEGAMCE---PLSVGVHACRRANIGPE 96
            P++  +         VVH   +  K+     LE+  +     P  +G      A + P 
Sbjct: 155 KPIYHFMGTSTFSQYTVVHDVSVA-KIDPVAPLEKVCLLGCGVPTGLGA-VWNTAKVEPG 212
Query: 97  TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAE 156
           + V + G G +GL     A+A GA RI+ +D+D  +   AK  G    +    + Q I +
Sbjct: 213 SIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRAKNFGVTEFINPKEHEQPIQQ 272
Query: 157 EVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHREMTVPLTP 211
            +  +      G+D SF+C G    M +AL     G G   +VG+      +   P
Sbjct: 273 VIVDLTDG---GVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQEISTRP 325

>pdb|3FPC|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By E. Histolytica Adh Length = 352

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 99/239 (41%), Gaps = 33/239 (13%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQV---- 56
           +VGSEVK   PGDRV +      W+    + G +     S G+ +      + + V    
Sbjct: 67  EVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQ---HSGGMLAGWKFSNVKDGVFGEF 123
Query: 57  --VHPADLCF-KLPDNVSLEEGAMC-EPLSVGVHACRRANIGPETNVLIMGSGPIGLVTM 112
             V+ AD+    LP  + LE   M  + ++ G H    ANI     V ++G GP+GL+++
Sbjct: 124 FHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSV 183
Query: 113 LAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS 172
             A   GA RI  V    +   +A + GA +I+       DI E++  ++   G G+D  
Sbjct: 184 AGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNG--DIVEQI--LKATDGKGVDKV 239
Query: 173 FDCAGFNKTMSTALSATRAGGKV------------------CLVGMGHREMTVPLTPAA 213
               G   T + A+   + G  +                    VGMGH+ +   L P  
Sbjct: 240 VIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPGG 298

>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 101/239 (42%), Gaps = 38/239 (15%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------- 46
           VG  V T+ PGD+V       C +C  CK    N C ++  LG+P               
Sbjct: 76  VGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKND-LGNPRGTLQDGTRRFTCRG 134
Query: 47  -PVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL----------SVGV-HACRRANIG 94
            P+H  L           + + D  ++ +     PL          S G   A   A + 
Sbjct: 135 KPIHHFLGTSTFSQ----YTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVT 190
Query: 95  PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI 154
           P +   + G G +GL  ++  +A GA RI+ VD++  + + AK+LGA   +    N QD 
Sbjct: 191 PGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECI----NPQDY 246
Query: 155 AEEVEKIQKAMGT-GIDVSFDCAG-FNKTMSTALSATRAGGKVCLVGMGHREMTVPLTP 211
            + ++++ K M   G+D SF+  G  +  M++ L    A G   +VG+      + + P
Sbjct: 247 KKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNLSINP 305

>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 101/239 (42%), Gaps = 38/239 (15%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------- 46
           VG  V T+ PGD+V       C +C  CK    N C ++  LG+P               
Sbjct: 76  VGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKND-LGNPRGTLQDGTRRFTCRG 134
Query: 47  -PVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL----------SVGV-HACRRANIG 94
            P+H  L           + + D  ++ +     PL          S G   A   A + 
Sbjct: 135 KPIHHFLGTSTFSQ----YTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVT 190
Query: 95  PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI 154
           P +   + G G +GL  ++  +A GA RI+ VD++  + + AK+LGA   +    N QD 
Sbjct: 191 PGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECI----NPQDY 246
Query: 155 AEEVEKIQKAMGT-GIDVSFDCAG-FNKTMSTALSATRAGGKVCLVGMGHREMTVPLTP 211
            + ++++ K M   G+D SF+  G  +  M++ L    A G   +VG+      + + P
Sbjct: 247 KKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNLSINP 305

>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 101/239 (42%), Gaps = 38/239 (15%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------- 46
           VG  V T+ PGD+V       C +C  CK    N C ++  LG+P               
Sbjct: 76  VGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKND-LGNPRGTLQDGTRRFTCRG 134
Query: 47  -PVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL----------SVGV-HACRRANIG 94
            P+H  L           + + D  ++ +     PL          S G   A   A + 
Sbjct: 135 KPIHHFLGTSTFSQ----YTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVT 190
Query: 95  PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI 154
           P +   + G G +GL  ++  +A GA RI+ VD++  + + AK+LGA   +    N QD 
Sbjct: 191 PGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECI----NPQDY 246
Query: 155 AEEVEKIQKAMGT-GIDVSFDCAG-FNKTMSTALSATRAGGKVCLVGMGHREMTVPLTP 211
            + ++++ K M   G+D SF+  G  +  M++ L    A G   +VG+      + + P
Sbjct: 247 KKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNLSINP 305

>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 101/239 (42%), Gaps = 38/239 (15%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------- 46
           VG  V T+ PGD+V       C +C  CK    N C ++  LG+P               
Sbjct: 76  VGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKND-LGNPRGTLQDGTRRFTCRG 134
Query: 47  -PVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL----------SVGV-HACRRANIG 94
            P+H  L           + + D  ++ +     PL          S G   A   A + 
Sbjct: 135 KPIHHFLGTSTFSQ----YTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVT 190
Query: 95  PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI 154
           P +   + G G +GL  ++  +A GA RI+ VD++  + + AK+LGA   +    N QD 
Sbjct: 191 PGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECI----NPQDY 246
Query: 155 AEEVEKIQKAMGT-GIDVSFDCAG-FNKTMSTALSATRAGGKVCLVGMGHREMTVPLTP 211
            + ++++ K M   G+D SF+  G  +  M++ L    A G   +VG+      + + P
Sbjct: 247 KKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNLSINP 305

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 102/235 (43%), Gaps = 30/235 (12%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------- 46
           VG  V T+ PGD+V       C +C  CK    N C ++  LG+P               
Sbjct: 76  VGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKND-LGNPRGTLQDGTRRFTCSG 134
Query: 47  -PVH-----GCLANQVVHPADLCFKLPDNVSLEEGAMCE-PLSVGV-HACRRANIGPETN 98
            P+H        +   V   +   K+     LE+  +     S G   A + A + P + 
Sbjct: 135 KPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTPGST 194
Query: 99  VLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV 158
             + G G +GL  ++  +A GA RI+ VD++  + + AK+LGA   +    N QD  + +
Sbjct: 195 CAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATECI----NPQDYKKPI 250
Query: 159 EKIQKAMGT-GIDVSFDCAG-FNKTMSTALSATRAGGKVCLVGMGHREMTVPLTP 211
           +++ K M   G+D SF+  G  +  M++ L    A G   +VG+      + + P
Sbjct: 251 QEVLKEMTDGGVDFSFEVIGQLDTMMASLLCCHEACGTSVIVGVPPDSQNLSINP 305

>pdb|1R37|A Chain A, Alcohol Dehydrogenase From Sulfolobus Solfataricus Complexed With Nad(H) And 2-Ethoxyethanol Length = 347

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 7/202 (3%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHP- 59
           +VG EV     GD VA+ P      C YC+ G  +LC   + LG     G  A  V+ P 
Sbjct: 76  EVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGI-NFDGAYAEYVIVPH 134
Query: 60  ADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGP-ETNVLIMGSGPIGLVTMLAARAF 118
               +KL    ++E   +         A R+A++ P +T +++   G +G + +  A+A 
Sbjct: 135 YKYMYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAV 194
Query: 119 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGF 178
               I+ VDV +  +  AK+ GAD ++  S  +QD   E+ +I ++   G+D   D    
Sbjct: 195 SGATIIGVDVREEAVEAAKRAGADYVINAS--MQDPLAEIRRITES--KGVDAVIDLNNS 250
Query: 179 NKTMSTALSATRAGGKVCLVGM 200
            KT+S    A    GK  +VG+
Sbjct: 251 EKTLSVYPKALAKQGKYVMVGL 272

>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 101/239 (42%), Gaps = 38/239 (15%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------- 46
           +G  V T+ PGD+V       C +C  CK    N C ++  L  P               
Sbjct: 76  IGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKND-LSMPRGTMQDGTSRFTCRG 134
Query: 47  -PVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL----------SVGV-HACRRANIG 94
            P+H  L           + + D +S+ +     PL          S G   A + A + 
Sbjct: 135 KPIHHFLGTSTFSQ----YTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVT 190
Query: 95  PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI 154
             +   + G G +GL  ++  +A GA RI+ VD++  R + AK++GA   V    N QD 
Sbjct: 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDRFAKAKEVGATECV----NPQDY 246
Query: 155 AEEVEKIQKAMGT-GIDVSFDCAGFNKTMSTALSATR-AGGKVCLVGMGHREMTVPLTP 211
            + ++++   M   G+D SF+  G   TM TALS  + A G   +VG+      + + P
Sbjct: 247 KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNP 305

>pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 15/204 (7%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQV---- 56
           +VGSEVK   PGDRV +      W+    + G +     S G+ +      + + V    
Sbjct: 67  EVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQ---HSGGMLAGWKFSNVKDGVFGEF 123
Query: 57  --VHPADLCF-KLPDNVSLEEGAMC-EPLSVGVHACRRANIGPETNVLIMGSGPIGLVTM 112
             V+ AD+    LP  + LE   M  + ++ G H    A+I   ++V+++G G +GL+ +
Sbjct: 124 FHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELADIEMGSSVVVIGIGAVGLMGI 183
Query: 113 LAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS 172
             A+  GA RI+ V      +  AK  GA +I+        I ++V K+    G G+D  
Sbjct: 184 AGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNG--HIVDQVMKLTN--GKGVDRV 239
Query: 173 FDCAGFNKTMSTALSATRAGGKVC 196
               G ++T+S A+   + GG + 
Sbjct: 240 IMAGGGSETLSQAVKMVKPGGIIS 263

>pdb|1NTO|A Chain A, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus-Monoclinic Crystal Form Length = 347

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 7/202 (3%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHP- 59
           +VG EV     GD VA+ P      C YC+ G  +LC   + LG     G  A  V+ P 
Sbjct: 76  EVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGI-NFDGAYAEYVIVPH 134
Query: 60  ADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGP-ETNVLIMGSGPIGLVTMLAARAF 118
               +KL    ++E   +         A R+A++ P +T +++   G +G + +  A+A 
Sbjct: 135 YKYMYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAV 194
Query: 119 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGF 178
               I+ VDV +  +  AK+ GAD ++  S  +QD   E+ +I ++   G+D   D    
Sbjct: 195 SGATIIGVDVREEAVEAAKRAGADYVINAS--MQDPLAEIRRITES--KGVDAVIDLNYS 250
Query: 179 NKTMSTALSATRAGGKVCLVGM 200
            KT+S    A    GK  +VG+
Sbjct: 251 EKTLSVYPKALAKQGKYVMVGL 272

>pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form) Length = 351

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 15/204 (7%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQV---- 56
           +VGSEVK   PGDRV +      W+    + G       S G+ +        + V    
Sbjct: 67  EVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAG---FQQHSNGMLAGWKFSNFKDGVFGEY 123
Query: 57  --VHPADLCFK-LPDNVSLEEGAM-CEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTM 112
             V+ AD+    LP ++ LE   M  + ++ G H    A+I   ++V+++G G +GL+ +
Sbjct: 124 FHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGAELADIQMGSSVVVIGIGAVGLMGI 183
Query: 113 LAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS 172
             A+  GA RI+ V      +  AK  GA +I+        I ++V K+    G G+D  
Sbjct: 184 AGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNG--HIVDQVMKLTN--GKGVDRV 239
Query: 173 FDCAGFNKTMSTALSATRAGGKVC 196
               G ++T+S A+S  + GG + 
Sbjct: 240 IMAGGGSETLSQAVSMVKPGGIIS 263

>pdb|3IP1|A Chain A, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From Thermotoga Maritima Length = 404

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 93/213 (43%), Gaps = 31/213 (14%)
Query: 12  GDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVS 71
           G+ V  E  + C  C  C  G  N C     LG   V G  A  V   A   + L +   
Sbjct: 122 GEPVCAEEXLWCGHCRPCAEGFPNHCENLNELGFN-VDGAFAEYVKVDAKYAWSLRELEG 180
Query: 72  LEEG-------AMCEPLSVGVHAC--RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPR 122
           + EG       ++ EP SV  +A   R   I P  NV+I+G GPIGL  +   +  GA +
Sbjct: 181 VYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASK 240
Query: 123 IVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMG-------TGI------ 169
           +++ +  + R ++AK+LGAD+++  +   ++  E V      +G       TG+      
Sbjct: 241 VILSEPSEVRRNLAKELGADHVIDPTK--ENFVEAVLDYTNGLGAKLFLEATGVPQLVWP 298
Query: 170 ---DVSFDCAGFNKTMSTALSATRAGGKVCLVG 199
              +V +   G N T++      RA  K+ L G
Sbjct: 299 QIEEVIWRARGINATVAI---VARADAKIPLTG 328

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 34/224 (15%)
Query: 2   VGSEVKTLVPGDRVALEPGI--SCWQCD-----YCKG------------GRYNLCPESKG 42
           +G  V  L  GD V L  G    C QC+     YC              G + LC   +G
Sbjct: 74  IGPNVTELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQG 133
Query: 43  LGSPPV--HGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVH----ACRRA-NIGP 95
           + +         A   +   +   K+  +V +E   +  PL  G+     AC  A  + P
Sbjct: 134 VVNDHFFAQSSFATYALSRENNTVKVTKDVPIE---LLGPLGCGIQTGAGACINALKVTP 190
Query: 96  ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIA 155
            ++ +  G+G +GL  +LAA+  GA  I+ VD+ + RL +AK+LGA +++   T      
Sbjct: 191 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQ----- 245
Query: 156 EEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG 199
           + V  I++    G++ + +  G  + +   + A    GK+ +VG
Sbjct: 246 DPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVG 289

>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 100/239 (41%), Gaps = 38/239 (15%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------- 46
           +G  V T+ PGD+V       C +C  CK    N C ++  L  P               
Sbjct: 76  IGEGVTTVRPGDKVIPLATPQCGKCRVCKHPEGNFCLKND-LSMPRGTMQDGTSRFTCRG 134
Query: 47  -PVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL----------SVGV-HACRRANIG 94
            P+H  L           + + D +S+ +     PL          S G   A + A + 
Sbjct: 135 KPIHHFLGTSTFSQ----YTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVT 190
Query: 95  PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI 154
             +   + G G +GL  ++  +A GA RI+ VD++  + + AK++GA   V    N QD 
Sbjct: 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECV----NPQDY 246
Query: 155 AEEVEKIQKAMGT-GIDVSFDCAGFNKTMSTALS-ATRAGGKVCLVGMGHREMTVPLTP 211
            + ++++   M   G+D SF+  G   TM TALS    A G   +VG+      + + P
Sbjct: 247 KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNP 305

>pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium Beijerinckii Alcohol Dehydrogenase Is Critical For Thermostabilization Length = 351

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 15/204 (7%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQV---- 56
           +VGSEVK   PGDRV +      W+    + G       S G+ +        + V    
Sbjct: 67  EVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAG---FPQHSNGMLAGWKFSNFKDGVFGEY 123
Query: 57  --VHPADLCFK-LPDNVSLEEGAM-CEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTM 112
             V+ AD+    LP ++ LE   M  + ++ G H    A+I   ++V+++G G +GL+ +
Sbjct: 124 FHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGAELADIQMGSSVVVIGIGAVGLMGI 183
Query: 113 LAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS 172
             A+  GA RI+ V      +  AK  GA +I+        I ++V K+    G G+D  
Sbjct: 184 AGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNG--HIVDQVMKLTN--GKGVDRV 239
Query: 173 FDCAGFNKTMSTALSATRAGGKVC 196
               G ++T+S A+S  + GG + 
Sbjct: 240 IMAGGGSETLSQAVSMVKPGGIIS 263

>pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh) Double Mutant (W95l,N249y) Length = 347

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 7/202 (3%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHP- 59
           +VG EV     GD VA+ P      C YC+ G  +LC   + LG     G  A  V+ P 
Sbjct: 76  EVGDEVVGYSKGDLVAVNPLQGEGNCYYCRIGEEHLCDSPRWLGI-NFDGAYAEYVIVPH 134
Query: 60  ADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGP-ETNVLIMGSGPIGLVTMLAARAF 118
               +KL    ++E   +         A R+A++ P +T +++   G +G + +  A+A 
Sbjct: 135 YKYMYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAV 194
Query: 119 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGF 178
               I+ VDV +  +  AK+ GAD ++  S  +QD   E+ +I ++   G+D   D    
Sbjct: 195 SGATIIGVDVREEAVEAAKRAGADYVINAS--MQDPLAEIRRITES--KGVDAVIDLNYS 250
Query: 179 NKTMSTALSATRAGGKVCLVGM 200
            KT+S    A    GK  +VG+
Sbjct: 251 EKTLSVYPKALAKQGKYVMVGL 272

>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 100/239 (41%), Gaps = 38/239 (15%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------- 46
           +G  V T+ PGD+V       C +C  CK    N C ++  L  P               
Sbjct: 76  IGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKND-LSMPRGTMQDGTSRFTCRG 134
Query: 47  -PVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL----------SVGV-HACRRANIG 94
            P+H  L           + + D +S+ +     PL          S G   A + A + 
Sbjct: 135 KPIHHFLGTSTFSQ----YTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVT 190
Query: 95  PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI 154
             +   + G G +GL  ++  +A GA RI+ VD++  + + AK++GA   V    N QD 
Sbjct: 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECV----NPQDY 246
Query: 155 AEEVEKIQKAMGT-GIDVSFDCAGFNKTMSTALS-ATRAGGKVCLVGMGHREMTVPLTP 211
            + ++++   M   G+D SF+  G   TM TALS    A G   +VG+      + + P
Sbjct: 247 KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNP 305

>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 100/239 (41%), Gaps = 38/239 (15%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------- 46
           +G  V T+ PGD+V       C +C  CK    N C ++  L  P               
Sbjct: 76  IGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKND-LSMPRGTMQDGTSRFTCRG 134
Query: 47  -PVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL----------SVGV-HACRRANIG 94
            P+H  L           + + D +S+ +     PL          S G   A + A + 
Sbjct: 135 KPIHHFLGTSTFSQ----YTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVT 190
Query: 95  PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI 154
             +   + G G +GL  ++  +A GA RI+ VD++  + + AK++GA   V    N QD 
Sbjct: 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECV----NPQDY 246
Query: 155 AEEVEKIQKAMGT-GIDVSFDCAGFNKTMSTALS-ATRAGGKVCLVGMGHREMTVPLTP 211
            + ++++   M   G+D SF+  G   TM TALS    A G   +VG+      + + P
Sbjct: 247 KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNP 305

>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 101/239 (42%), Gaps = 38/239 (15%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------- 46
           +G  V T+ PGD+V       C +C  CK    N C ++  L  P               
Sbjct: 76  IGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKND-LSMPRGTMQDGTSRFTCRG 134
Query: 47  -PVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL----------SVGV-HACRRANIG 94
            P+H  L           + + D +S+ +     PL          S G   A + A + 
Sbjct: 135 KPIHHFLGTSTFSQ----YTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVT 190
Query: 95  PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI 154
             +   + G G +GL  ++  +A GA RI+ VD++  + + AK++GA   V    N QD 
Sbjct: 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECV----NPQDY 246
Query: 155 AEEVEKIQKAMGT-GIDVSFDCAGFNKTMSTALSATR-AGGKVCLVGMGHREMTVPLTP 211
            + ++++   M   G+D SF+  G   TM TALS  + A G   +VG+      + + P
Sbjct: 247 KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNP 305

>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 100/239 (41%), Gaps = 39/239 (16%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------- 46
           +G  V T+ PGD+V       C +C  CK    NLC   K L  P               
Sbjct: 76  IGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLC--LKNLSMPRGTMQDGTSRFTCRG 133
Query: 47  -PVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL----------SVGV-HACRRANIG 94
            P+H  L           + + D +S+ +     PL          S G   A + A + 
Sbjct: 134 KPIHHFLGTSTFSQ----YTVVDEISVAKIDAASPLEKVCLVGCGFSTGYGSAVKVAKVT 189
Query: 95  PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI 154
             +   + G G +GL  ++  +A GA RI+ VD++  + + AK++GA   V    N QD 
Sbjct: 190 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECV----NPQDY 245
Query: 155 AEEVEKIQKAMGT-GIDVSFDCAGFNKTMSTALSATR-AGGKVCLVGMGHREMTVPLTP 211
            + ++++   M   G+D SF+  G   TM  ALS  + A G   +VG+      + + P
Sbjct: 246 KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVAALSCCQEAYGVSVIVGVPPDSQNLSMNP 304

>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 91/214 (42%), Gaps = 37/214 (17%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------- 46
           +G  V T+ PGD+V       C +C  CK    N C ++  L  P               
Sbjct: 76  IGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKND-LSMPRGTMQDGTSRFTCRG 134
Query: 47  -PVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL----------SVGV-HACRRANIG 94
            P+H  L           + + D +S+ +     PL          S G   A + A + 
Sbjct: 135 KPIHHFLGTSTFSQ----YTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVT 190
Query: 95  PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI 154
             +   + G G +GL  ++  +A GA RI+ VD++  + + AK++GA   V    N QD 
Sbjct: 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECV----NPQDY 246
Query: 155 AEEVEKIQKAMGT-GIDVSFDCAGFNKTMSTALS 187
            + ++++   M   G+D SF+  G   TM TALS
Sbjct: 247 KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALS 280

>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 100/239 (41%), Gaps = 39/239 (16%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------- 46
           +G  V T+ PGD+V       C +C  CK    NLC   K L  P               
Sbjct: 76  IGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLC--LKNLSMPRGTMQDGTSRFTCRG 133
Query: 47  -PVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL----------SVGV-HACRRANIG 94
            P+H  L           + + D +S+ +     PL          S G   A + A + 
Sbjct: 134 KPIHHFLGTSTFSQ----YTVVDEISVAKIDAASPLEKVCLVGCGFSTGYGSAVKVAKVT 189
Query: 95  PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI 154
             +   + G G +GL  ++  +A GA RI+ VD++  + + AK++GA   V    N QD 
Sbjct: 190 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECV----NPQDY 245
Query: 155 AEEVEKIQKAMGT-GIDVSFDCAGFNKTMSTALSATR-AGGKVCLVGMGHREMTVPLTP 211
            + ++++   M   G+D SF+  G   TM  ALS  + A G   +VG+      + + P
Sbjct: 246 KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVAALSCCQEAYGVSVIVGVPPDSQNLSMNP 304

>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 91/214 (42%), Gaps = 37/214 (17%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------- 46
           +G  V T+ PGD+V       C +C  CK    N C ++  L  P               
Sbjct: 76  IGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKND-LSMPRGTMQDGTSRFTCRG 134
Query: 47  -PVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL----------SVGV-HACRRANIG 94
            P+H  L           + + D +S+ +     PL          S G   A + A + 
Sbjct: 135 KPIHHFLGTSTFSQ----YTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVT 190
Query: 95  PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI 154
             +   + G G +GL  ++  +A GA RI+ VD++  + + AK++GA   V    N QD 
Sbjct: 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECV----NPQDY 246
Query: 155 AEEVEKIQKAMGT-GIDVSFDCAGFNKTMSTALS 187
            + ++++   M   G+D SF+  G   TM TALS
Sbjct: 247 KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALS 280

>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 91/214 (42%), Gaps = 37/214 (17%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------- 46
           +G  V T+ PGD+V       C +C  CK    N C ++  L  P               
Sbjct: 76  IGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKND-LSMPRGTMQDGTSRFTCRG 134
Query: 47  -PVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL----------SVGV-HACRRANIG 94
            P+H  L           + + D +S+ +     PL          S G   A + A + 
Sbjct: 135 KPIHHFLGTSTFSQ----YTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVT 190
Query: 95  PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI 154
             +   + G G +GL  ++  +A GA RI+ VD++  + + AK++GA   V    N QD 
Sbjct: 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECV----NPQDY 246
Query: 155 AEEVEKIQKAMGT-GIDVSFDCAGFNKTMSTALS 187
            + ++++   M   G+D SF+  G   TM TALS
Sbjct: 247 KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALS 280

>pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii: Crystal Structure Of Mutant With Enhanced Thermal Stability Length = 351

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 15/204 (7%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQV---- 56
           +VGSEVK   PGDRV +      W+    + G       S G+ +        + V    
Sbjct: 67  EVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAG---FQQHSNGMLAGWKFSNFKDGVFGEY 123
Query: 57  --VHPADLCFK-LPDNVSLEEGAM-CEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTM 112
             V+ AD+    LP ++ LE   M  + ++ G H    A+I   ++V+++G G +GL+ +
Sbjct: 124 FHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGAELADIEMGSSVVVIGIGAVGLMGI 183
Query: 113 LAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS 172
             A+  GA RI+ V      +  AK  GA +I+        I ++V K+    G G+D  
Sbjct: 184 AGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNG--HIEDQVMKLTN--GKGVDRV 239
Query: 173 FDCAGFNKTMSTALSATRAGGKVC 196
               G ++T+S A+   + GG + 
Sbjct: 240 IMAGGGSETLSQAVKMVKPGGIIS 263

>pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus Length = 347

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 92/202 (45%), Gaps = 7/202 (3%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHP- 59
           +VG EV     GD VA+ P      C YC+ G  +LC   + LG     G  A  V+ P 
Sbjct: 76  EVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGI-NFDGAYAEYVIVPH 134
Query: 60  ADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGP-ETNVLIMGSGPIGLVTMLAARAF 118
               +KL    ++E   +         A R+A++ P +T +++   G +G   +  A+A 
Sbjct: 135 YKYXYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTXAVQIAKAV 194
Query: 119 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGF 178
               I+ VDV +  +  AK+ GAD ++  S  +QD   E+ +I ++   G+D   D    
Sbjct: 195 SGATIIGVDVREEAVEAAKRAGADYVINAS--MQDPLAEIRRITES--KGVDAVIDLNNS 250
Query: 179 NKTMSTALSATRAGGKVCLVGM 200
            KT+S    A    GK   VG+
Sbjct: 251 EKTLSVYPKALAKQGKYVXVGL 272

>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 99/239 (41%), Gaps = 38/239 (15%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------- 46
           +G  V T+ PGD+V       C +C  CK    N C ++  L  P               
Sbjct: 76  IGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKND-LSMPRGTMQDGTSRFTCRG 134
Query: 47  -PVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL----------SVGV-HACRRANIG 94
            P+H  L           + + D +S+ +     PL          S G   A + A + 
Sbjct: 135 KPIHHFLGTSTFSQ----YTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVT 190
Query: 95  PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI 154
             +   + G G  GL  ++  +A GA RI+ VD++  + + AK++GA   V    N QD 
Sbjct: 191 QGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECV----NPQDY 246
Query: 155 AEEVEKIQKAMGT-GIDVSFDCAGFNKTMSTALS-ATRAGGKVCLVGMGHREMTVPLTP 211
            + ++++   M   G+D SF+  G   TM TALS    A G   +VG+      + + P
Sbjct: 247 KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNP 305

>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 99/239 (41%), Gaps = 38/239 (15%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------- 46
           +G  V T+ PGD+V       C +C  CK    N C ++  L  P               
Sbjct: 76  IGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKND-LSMPRGTMQDGTSRFTCRG 134
Query: 47  -PVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL----------SVGV-HACRRANIG 94
            P+H  L           + + D +S+ +     PL          S G   A + A + 
Sbjct: 135 KPIHHFLGTSTFSQ----YTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVT 190
Query: 95  PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI 154
             +   + G G  GL  ++  +A GA RI+ VD++  + + AK++GA   V    N QD 
Sbjct: 191 QGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECV----NPQDY 246
Query: 155 AEEVEKIQKAMGT-GIDVSFDCAGFNKTMSTALS-ATRAGGKVCLVGMGHREMTVPLTP 211
            + ++++   M   G+D SF+  G   TM TALS    A G   +VG+      + + P
Sbjct: 247 KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNP 305

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 28/234 (11%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC-------PESKGLGSPPVHGCLAN 54
           VG  V T+ PGD+V       C +C  CK    N C       P+           C   
Sbjct: 76  VGEGVTTVKPGDKVIPLAIPQCGKCRICKNPESNYCLKNDVSNPQGTLQDGTSRFTCRRK 135
Query: 55  QVVHPADLC----FKLPDNVSLEEGAMCEPL----------SVGV-HACRRANIGPETNV 99
            + H   +     + + D  ++ +     PL          S G   A   A + P +  
Sbjct: 136 PIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSTC 195
Query: 100 LIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE 159
            + G G +GL  ++  +A GA RI+ VD++  + + AK+LGA   +    N QD  + ++
Sbjct: 196 AVFGLGGVGLSAIMGCKAAGAARIIAVDINKDKFAKAKELGATECI----NPQDYKKPIQ 251
Query: 160 KIQKAMGT-GIDVSFDCAG-FNKTMSTALSATRAGGKVCLVGMGHREMTVPLTP 211
           ++ K M   G+D SF+  G  +  M++ L    A G   +VG+      + + P
Sbjct: 252 EVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSMNP 305

>pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a Resolution Length = 359

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 18/226 (7%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCP--ESKGLGSPPVHGCLANQVVH 58
           +V   V+ L  GD V L P ++   C  C+ G    C   E  GL    + G  A  +  
Sbjct: 87  EVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLN---IDGGFAEFMRT 143
Query: 59  PADLCFKLPDNVSLEEGAMCEPLS-VGVHACRRAN-----IGPETNVLIMGSGPIGLVTM 112
                 KLP ++S E+     PL+  G+ A R        + P   V I+G G +G + +
Sbjct: 144 SHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAV 203
Query: 113 LAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS 172
              +      ++ +DV + +L +A++LGAD++V      +D  ++V ++ +  G G++V+
Sbjct: 204 QLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR---RDPVKQVMELTR--GRGVNVA 258
Query: 173 FDCAGFNKTMSTALSATRAGGKVCLVGMG--HREMTVPLTPAAASF 216
            D  G   T+          G++ +VG G   R  T+ +  +  SF
Sbjct: 259 MDFVGSQATVDYTPYLLGRMGRLIIVGYGGELRFPTIRVISSEVSF 304

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 27/214 (12%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE---SKGLGSPP----VHGCLAN 54
           VG  V  L  GD V       C +C +C   + NLC +   ++G G  P       C   
Sbjct: 76  VGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGK 135
Query: 55  QVVHPADLC----FKLPDNVSLEEGAMCEPL----------SVGV-HACRRANIGPETNV 99
            ++H         + +  ++S+ +     PL          S G   A   A + P +  
Sbjct: 136 TILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVC 195
Query: 100 LIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE 159
            + G G +GL  ++  +  GA RI+ VD++  + + AK+ GA   +    N QD ++ ++
Sbjct: 196 AVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI----NPQDFSKPIQ 251
Query: 160 KIQKAMGT-GIDVSFDCAGFNKTMSTALSATRAG 192
           ++   M   G+D SF+C G  K M  AL A   G
Sbjct: 252 EVLIEMTDGGVDYSFECIGNVKVMRAALEACHKG 285

>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 27/214 (12%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE---SKGLGSPP----VHGCLAN 54
           VG  V  L  GD V       C +C +C   + NLC +   ++G G  P       C   
Sbjct: 75  VGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGK 134
Query: 55  QVVHPADLC----FKLPDNVSLEEGAMCEPL----------SVGV-HACRRANIGPETNV 99
            ++H         + +  ++S+ +     PL          S G   A   A + P +  
Sbjct: 135 TILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVC 194
Query: 100 LIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE 159
            + G G +GL  ++  +  GA RI+ VD++  + + AK+ GA   +    N QD ++ ++
Sbjct: 195 AVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI----NPQDFSKPIQ 250
Query: 160 KIQKAMGT-GIDVSFDCAGFNKTMSTALSATRAG 192
           ++   M   G+D SF+C G  K M  AL A   G
Sbjct: 251 EVLIEMTDGGVDYSFECIGNVKVMRAALEACHKG 284

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 27/214 (12%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE---SKGLGSPP----VHGCLAN 54
           VG  V  L  GD V       C +C +C   + NLC +   ++G G  P       C   
Sbjct: 75  VGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGK 134
Query: 55  QVVHPADLC----FKLPDNVSLEEGAMCEPL----------SVGV-HACRRANIGPETNV 99
            ++H         + +  ++S+ +     PL          S G   A   A + P +  
Sbjct: 135 TILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVC 194
Query: 100 LIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE 159
            + G G +GL  ++  +  GA RI+ VD++  + + AK+ GA   +    N QD ++ ++
Sbjct: 195 AVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI----NPQDFSKPIQ 250
Query: 160 KIQKAMGT-GIDVSFDCAGFNKTMSTALSATRAG 192
           ++   M   G+D SF+C G  K M  AL A   G
Sbjct: 251 EVLIEMTDGGVDYSFECIGNVKVMRAALEACHKG 284

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 27/214 (12%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE---SKGLGSPP----VHGCLAN 54
           VG  V  L  GD V       C +C +C   + NLC +   ++G G  P       C   
Sbjct: 76  VGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGK 135
Query: 55  QVVHPADLC----FKLPDNVSLEEGAMCEPL----------SVGV-HACRRANIGPETNV 99
            ++H         + +  ++S+ +     PL          S G   A   A + P +  
Sbjct: 136 TILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVC 195
Query: 100 LIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE 159
            + G G +GL  ++  +  GA RI+ VD++  + + AK+ GA   +    N QD ++ ++
Sbjct: 196 AVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI----NPQDFSKPIQ 251
Query: 160 KIQKAMGT-GIDVSFDCAGFNKTMSTALSATRAG 192
           ++   M   G+D SF+C G  K M  AL A   G
Sbjct: 252 EVLIEMTDGGVDYSFECIGNVKVMRAALEACHKG 285

>pdb|1Y9A|A Chain A, Alcohol Dehydrogenase From Entamoeba Histolotica In Complex With Cacodylate Length = 360

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 96/242 (39%), Gaps = 39/242 (16%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGR----------YNLCPESKGLGSPPVHG 50
           KVGS VK L  GD+V +      W  +  + G           +       G+ S   H 
Sbjct: 67  KVGSLVKRLKVGDKVIVPAITPDWGEEESQRGYPMHSGGMLGGWKFSNFKDGVFSEVFHV 126
Query: 51  CLANQVVHPADLCFKLPDNVSLEEGAMCEPL-SVGVHACRRANIGPETNVLIMGSGPIGL 109
             A+     A+L   LP ++  E+  M   + + G H    ANI     V ++G GP+GL
Sbjct: 127 NEAD-----ANLAL-LPRDIKPEDAVMLSDMVTTGFHGAELANIKLGDTVCVIGIGPVGL 180
Query: 110 VTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGI 169
           +++  A   GA RI  V    +   +A + GA +I+       DI E++  ++   G G+
Sbjct: 181 MSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNG--DIVEQI--LKATDGKGV 236
Query: 170 DVSFDCAGFNKTMSTALSATRAGGKV------------------CLVGMGHREMTVPLTP 211
           D      G   T + A+   + G  +                    VGMGH+ +   LTP
Sbjct: 237 DKVVIAGGXVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLTP 296
Query: 212 AA 213
Sbjct: 297 GG 298

>pdb|2OUI|A Chain A, D275p Mutant Of Alcohol Dehydrogenase From Protozoa Entamoeba Histolytica Length = 360

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 96/242 (39%), Gaps = 39/242 (16%)
Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGR----------YNLCPESKGLGSPPVHG 50
           KVGS VK L  GD+V +      W  +  + G           +       G+ S   H 
Sbjct: 67  KVGSLVKRLKVGDKVIVPAITPDWGEEESQRGYPMHSGGMLGGWKFSNFKDGVFSEVFHV 126
Query: 51  CLANQVVHPADLCFKLPDNVSLEEGAMCEPL-SVGVHACRRANIGPETNVLIMGSGPIGL 109
             A+     A+L   LP ++  E+  M   + + G H    ANI     V ++G GP+GL
Sbjct: 127 NEAD-----ANLAL-LPRDIKPEDAVMLSDMVTTGFHGAELANIKLGDTVCVIGIGPVGL 180
Query: 110 VTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGI 169
           +++  A   GA RI  V    +   +A + GA +I+       DI E++  ++   G G+
Sbjct: 181 MSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNG--DIVEQI--LKATDGKGV 236
Query: 170 DVSFDCAGFNKTMSTALSATRAGGKV------------------CLVGMGHREMTVPLTP 211
           D      G   T + A+   + G  +                    VGMGH+ +   LTP
Sbjct: 237 DKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIPIPRSEWGVGMGHKHIHGGLTP 296
Query: 212 AA 213
Sbjct: 297 GG 298

>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 91/222 (40%), Gaps = 26/222 (11%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHG-------CLAN 54
           VG  V    PG++V       C +C +C+  + N C +     SP V         C   
Sbjct: 77  VGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGR 136
Query: 55  QVVHPADLC----FKLPDNVSLEEGAMCEPLSV------GVH-----ACRRANIGPETNV 99
           +V+          + + + +++ +     PL        GV      A   A + P +  
Sbjct: 137 KVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTC 196
Query: 100 LIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE 159
            + G G +GL  ++   + GA RI+ VD++  +   AK  GA + V  + + + I++ + 
Sbjct: 197 AVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLS 256
Query: 160 KIQKAMGTGIDVSFDCAGFNKTMSTAL-SATRAGGKVCLVGM 200
           K+      G+D S +C G    M  AL S  +  G   LVG 
Sbjct: 257 KMTNG---GVDFSLECVGNVGVMRNALESCLKGWGVSVLVGW 295

>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase Length = 333

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 12/153 (7%)
Query: 46  PPVHGCLANQVVHPADLCFKLPDNVSLEE----GAMCEPLSVGVHACRRANIGPETNVLI 101
           PP+ G  + + ++PA+   K+P ++ L++    G M + ++      +   + P   VLI
Sbjct: 93  PPL-GAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLI 151
Query: 102 M-GSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEK 160
              +G +G + +  AR  GA  I  V  ++ +   A+KLG  + +  ST  QD AE V +
Sbjct: 152 HAAAGGMGHIMVPWARHLGATVIGTVSTEE-KAETARKLGCHHTINYST--QDFAEVVRE 208
Query: 161 IQKAMGTGIDVSFDCAGFNKTMSTALSATRAGG 193
           I    G G+DV +D  G   T+  +L   R  G
Sbjct: 209 ITG--GKGVDVVYDSIG-KDTLQKSLDCLRPRG 238

>pdb|2DPH|A Chain A, Crystal Structure Of Formaldehyde Dismutase Length = 398

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 99/230 (43%), Gaps = 37/230 (16%)
Query: 3   GSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC------PESK----GLGSPPVHGCL 52
           GS+V+ +  GD V++   ++C +C  CK  R ++C      P++     G       G  
Sbjct: 76  GSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQ 135
Query: 53  ANQVVHP-AD-LCFKLPDNVSLEEGA-----MCEPLSVGVHACRRANIGPETNVLIMGSG 105
           A  V+ P AD +  K  D     E       + + L  G H C  A + P ++V I G+G
Sbjct: 136 AEYVLVPYADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGCVSAGVKPGSHVYIAGAG 195
Query: 106 PIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAM 165
           P+G      AR  GA  +++ D +  RL +    G + I     +L++ A   ++I + +
Sbjct: 196 PVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETI-----DLRNSAPLRDQIDQIL 250
Query: 166 GT-GIDVSFDCAGF--------------NKTMSTALSATRAGGKVCLVGM 200
           G   +D   D  GF              N  +++     RAGG + + G+
Sbjct: 251 GKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI 300

>pdb|1YQD|A Chain A, Sinapyl Alcohol Dehydrogenase Complexed With Nadp+ Length = 366

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 18/217 (8%)
Query: 1   KVGSEVKTLVPGDRVALEPGI-SCWQCDYCKGGRYNLCPESKGLGSPPVH------GCLA 53
           +VGS+VK +  GD+V +   + +C  C+ C     N CP+     +   H      G  +
Sbjct: 84  EVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYS 143
Query: 54  NQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVT 111
           N +V       + PDN+ L+ GA  +C  ++V           P  ++ I+G G +G V 
Sbjct: 144 NHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFGLDEPGKHIGIVGLGGLGHVA 203
Query: 112 MLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDV 171
           +  A+AFG+   VI      +    K  GAD+ +        ++ + E++Q A GT +D 
Sbjct: 204 VKFAKAFGSKVTVISTSPSKKEEALKNFGADSFL--------VSRDQEQMQAAAGT-LDG 254
Query: 172 SFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVP 208
             D       +       ++ GK+ LVG   + + +P
Sbjct: 255 IIDTVSAVHPLLPLFGLLKSHGKLILVGAPEKPLELP 291

>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 28/220 (12%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------- 46
           +G+ V  + PGD+V       C  C  CK    N C E   +G+                
Sbjct: 77  IGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFC-EKNDMGAKTGLMADMTSRFTCRG 135
Query: 47  -PVHGCLANQVVHP----ADLCF-KLPDNVSLEEGAMCEPLSVGV-HACRRANIGPETNV 99
            P++  +           AD+   K+     LE   +    + G   A   A + P +  
Sbjct: 136 KPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLESCLIGCGFATGYGAAVNTAKVTPGSTC 195
Query: 100 LIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV- 158
            + G G +G   ++  +A GA RI+ V     +   A +LGA   +    N +D  + + 
Sbjct: 196 AVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECL----NPKDYDKPIY 251
Query: 159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV 198
           E I +    G+D + +CAG  +TM  AL +T  G  V +V
Sbjct: 252 EVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVV 291

>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 86/212 (40%), Gaps = 32/212 (15%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGS--------------PP 47
           +G  V T+ PGD+V       C +C+ C+    NLC  S   G                P
Sbjct: 76  IGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDITGRGVLADGTTRFTCKGKP 135
Query: 48  VHGCLANQVVHPADLCFKLPDNVSLEEGAMCEP----------LSVGV-HACRRANIGPE 96
           VH  L           + + D  S+ +     P           S G   A +   + P 
Sbjct: 136 VHHFLNTSTFTE----YTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAVKTGKVKPG 191
Query: 97  TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAE 156
           +  ++ G G +GL  ++  ++ GA RI+ +D++  +   A  +GA   +    + + I+E
Sbjct: 192 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISE 251
Query: 157 EVEKIQKAMGTGIDVSFDCAGFNKTMSTALSA 188
            + ++    G  +  +F+  G  +TM  AL++
Sbjct: 252 VLSEMT---GNNVGYTFEVIGHLETMIDALAS 280

>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 86/212 (40%), Gaps = 32/212 (15%)
Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGS--------------PP 47
           +G  V T+ PGD+V       C +C+ C+    NLC  S   G                P
Sbjct: 76  IGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDITGRGVLADGTTRFTCKGKP 135
Query: 48  VHGCLANQVVHPADLCFKLPDNVSLEEGAMCEP----------LSVGV-HACRRANIGPE 96
           VH  +           + + D  S+ +     P           S G   A +   + P 
Sbjct: 136 VHHFMNTSTFTE----YTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAVKTGKVKPG 191
Query: 97  TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAE 156
           +  ++ G G +GL  ++  ++ GA RI+ +D++  +   A  +GA   +    + + I+E
Sbjct: 192 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISE 251
Query: 157 EVEKIQKAMGTGIDVSFDCAGFNKTMSTALSA 188
            + ++    G  +  +F+  G  +TM  AL++
Sbjct: 252 VLSEMT---GNNVGYTFEVIGHLETMIDALAS 280

>pdb|1KOL|A Chain A, Crystal Structure Of Formaldehyde Dehydrogenase Length = 398

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 98/231 (42%), Gaps = 39/231 (16%)
Query: 3   GSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC----PESKGLGSPPVH-----GCLA 53
           G +V+ L  GD V++   ++C +C  CK     +C    P   G     V      G  A
Sbjct: 77  GRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQA 136
Query: 54  NQVVHP-ADL-CFKLPDNVSLEEGA-----MCEPLSVGVHACRRANIGPETNVLIMGSGP 106
             V+ P AD    KLPD     E       + + L  G H    A +GP + V + G+GP
Sbjct: 137 EYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGP 196
Query: 107 IGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGAD-NIVKVSTNLQDIAEEVEKIQKAM 165
           +GL    +AR  GA  +++ D++  RL+ AK  G +   + + T L       E+I   +
Sbjct: 197 VGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLH------EQIAALL 250
Query: 166 GT-GIDVSFDCAGFN---------------KTMSTALSATRAGGKVCLVGM 200
           G   +D + D  GF                  +++ +  TR  GK+ + G+
Sbjct: 251 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 301

>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Zeta-Crystallin-Like Quinone Oxidoreductase Zta1 Length = 334

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 99  VLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV 158
           +L   +G +GL+     +  GA  I +   D+ +L +AK+ GA+ ++  S   +DI  +V
Sbjct: 153 LLFAAAGGVGLILNQLLKMKGAHTIAVASTDE-KLKIAKEYGAEYLINASK--EDILRQV 209
Query: 159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVP 208
            K     G G+D SFD  G   T   +L+A +  G    V  G+    +P
Sbjct: 210 LKFTN--GKGVDASFDSVG-KDTFEISLAALKRKG--VFVSFGNASGLIP 254

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	1e-103
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	1e-100
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	3e-98
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	4e-96
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	2e-95
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	4e-95
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	1e-91
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	7e-76
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	4e-73
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	8e-61
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	3e-52
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	8e-47
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	4e-45
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	6e-42
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	1e-41
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	5e-36
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	2e-33
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	3e-33
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	7e-33
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	4e-29
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	7e-29
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	7e-29
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	1e-28
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	1e-28
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	1e-27
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	1e-27
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	2e-27
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	2e-27
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	3e-27
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	5e-27
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	2e-26
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	2e-18
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	2e-17
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	3e-17
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	8e-17
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	1e-16
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	2e-16
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	1e-15
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	2e-15
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	9e-15
3gms_A	340	Putative NADPH:quinone reductase; structural genom	1e-14
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	2e-14
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	3e-14
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	3e-14
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	5e-14
4eye_A	342	Probable oxidoreductase; structural genomics, niai	7e-14
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	1e-13
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	3e-13
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	8e-13
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	1e-12
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	2e-12
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	1e-11
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	1e-11
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	1e-10
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	4e-10
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	1e-09
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	1e-07
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	1e-07
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	7e-07
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	8e-07
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	3e-06
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	7e-06
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	5e-04

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  301 bits (772), Expect = e-103
 Identities = 98/214 (45%), Positives = 135/214 (63%), Gaps = 2/214 (0%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           KVGS VK L PGDRVA+EPG      ++CK GRYNL P      +PP  G L     H A
Sbjct: 77  KVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNA 136

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
             C+KLPDNV+ EEGA+ EPLSVG+HACRR  +     VL+ G+GPIG+VT+L A+A GA
Sbjct: 137 AFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGA 196

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
            ++V+ D+   RLS AK++GAD ++++S   +   E   K++  +G   +V+ +C G   
Sbjct: 197 AQVVVTDLSATRLSKAKEIGADLVLQISK--ESPQEIARKVEGQLGCKPEVTIECTGAEA 254

Query: 181 TMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
           ++   + ATR+GG + LVG+G    TVPL  AA 
Sbjct: 255 SIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAI 288

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  294 bits (755), Expect = e-100
 Identities = 109/214 (50%), Positives = 144/214 (67%), Gaps = 1/214 (0%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           KVG  VK L  GDRVA+EPG+ C +C +CK G+YNLCP+     +PP  G LA   VH A
Sbjct: 74  KVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAA 133

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
           D C KLPDNVSLEEGA+ EPLSVGVHACRRA +   T VL++G+GPIGLV++LAA+A+GA
Sbjct: 134 DFCHKLPDNVSLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA 193

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
             +V       RL VAK  GAD  + V    ++ +  +E+I+ A+G   +V+ DC+G  K
Sbjct: 194 -FVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEK 252

Query: 181 TMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
            ++  ++ TR GG + LVGMG + +TVPL  A A
Sbjct: 253 CITIGINITRTGGTLMLVGMGSQMVTVPLVNACA 286

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  289 bits (741), Expect = 3e-98
 Identities = 83/216 (38%), Positives = 124/216 (57%), Gaps = 5/216 (2%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            V   VK++  GDRVA+EP + C  C+ C  GRYN C     L +PPV G L   V HPA
Sbjct: 86  AVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPA 145

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
             C K+ + +S E GAM EPLSV +   +RA +     VLI G+GPIGL+TML A+A GA
Sbjct: 146 VWCHKIGN-MSYENGAMLEPLSVALAGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGA 204

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNL--QDIAEEVEKIQKAMGTGIDVSFDCAGF 178
             +VI D+D+ RL  AK++  + +      L  ++ A+++ +     G    V+ +C G 
Sbjct: 205 CPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVES--FGGIEPAVALECTGV 262

Query: 179 NKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
             +++ A+ A + GGKV ++G+G  E+ +P   A+ 
Sbjct: 263 ESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRASV 298

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  282 bits (725), Expect = 4e-96
 Identities = 62/211 (29%), Positives = 99/211 (46%), Gaps = 5/211 (2%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            VGS V  L PGD VA  P + C+ C  C  G Y+ C +   +GS    G  A  +V   
Sbjct: 67  AVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRR-DGGFAEYIVVKR 125

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
              F LP ++ +E+GA  EP++VG+HA   A      NV+I+G+G IGL+ +  A A GA
Sbjct: 126 KNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGA 185

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
             +  +D+   +L++AK  GA      S       +    +         +  + AG  +
Sbjct: 186 KSVTAIDISSEKLALAKSFGAMQTFNSSE--MSAPQMQSVL--RELRFNQLILETAGVPQ 241

Query: 181 TMSTALSATRAGGKVCLVGMGHREMTVPLTP 211
           T+  A+       ++ LVG  H+++ +    
Sbjct: 242 TVELAVEIAGPHAQLALVGTLHQDLHLTSAT 272

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  281 bits (721), Expect = 2e-95
 Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 7/212 (3%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            VG  V+    GD V+LE  I C  C  C+ G Y++C  ++ LG     G  A  VV PA
Sbjct: 71  AVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDR-DGGFAEYVVVPA 129

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
           +  +  P ++  E  A+ EP    VH     +     +VLI G+GPIGL+  +  RA GA
Sbjct: 130 ENAWVNPKDLPFEVAAILEPFGNAVHTVYAGSGVSGKSVLITGAGPIGLMAAMVVRASGA 189

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
             I++ D + YRL+ A+      +  +  +L      +E +++  G+G++V  + +G   
Sbjct: 190 GPILVSDPNPYRLAFARPYADRLVNPLEEDL------LEVVRRVTGSGVEVLLEFSGNEA 243

Query: 181 TMSTALSATRAGGKVCLVGMGHREMTVPLTPA 212
            +   L A   GG+  ++G+    +   L   
Sbjct: 244 AIHQGLMALIPGGEARILGIPSDPIRFDLAGE 275

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  281 bits (720), Expect = 4e-95
 Identities = 65/214 (30%), Positives = 107/214 (50%), Gaps = 3/214 (1%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           + GS V+ + PG R+  +P ISC +C  C+ GR NLC   + +G     G  A  V+ P 
Sbjct: 89  EAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHR-DGGFAEYVLVPR 147

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
              F++P  +    GA CEPL+  +H    + I   + V I+G G IGL+T+  AR  GA
Sbjct: 148 KQAFEIPLTLDPVHGAFCEPLACCLHGVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGA 207

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
             +++      +  +A+++GA   V  S    D+ E +      +  G+DV  +CAG  +
Sbjct: 208 TTVILSTRQATKRRLAEEVGATATVDPSA--GDVVEAIAGPVGLVPGGVDVVIECAGVAE 265

Query: 181 TMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA 214
           T+  +    +AGG V ++G+  +   V + P   
Sbjct: 266 TVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDI 299

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  271 bits (696), Expect = 1e-91
 Identities = 65/212 (30%), Positives = 110/212 (51%), Gaps = 6/212 (2%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           ++G  V+ +  GD V++E  I C +C  C+ G+Y++C  +K  G     G  A   V PA
Sbjct: 75  EIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVD-TDGVFAEYAVVPA 133

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
              +K P ++  E   + EPL   V       I  ++ VLI G+GP+GL+ +  A+A GA
Sbjct: 134 QNIWKNPKSIPPEYATLQEPLGNAVDTVLAGPISGKS-VLITGAGPLGLLGIAVAKASGA 192

Query: 121 PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK 180
             +++ +  D+R  +AKK+GAD ++      +D+ +EV  I    G G+DV  + +G  K
Sbjct: 193 YPVIVSEPSDFRRELAKKVGADYVINPFE--EDVVKEVMDI--TDGNGVDVFLEFSGAPK 248

Query: 181 TMSTALSATRAGGKVCLVGMGHREMTVPLTPA 212
            +   L A    G+V L+G+   ++T+     
Sbjct: 249 ALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNL 280

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  231 bits (592), Expect = 7e-76
 Identities = 41/227 (18%), Positives = 84/227 (37%), Gaps = 24/227 (10%)

Query: 2   VGSEVKTLVPGDRVALEPG--ISCWQCDYCKGGRYNLCPESKGLGSPPV--HGCLANQVV 57
           V      L  GD V        +    +Y +  + ++ P+        V  HG ++    
Sbjct: 70  VDPNDTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFT 129

Query: 58  HPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANI------GPETNVLIMGSGPIGLVT 111
            P     ++P + + E G + EP+S+   A   A           ++  ++G+G +GL+T
Sbjct: 130 SPEKYLVRIPRSQA-ELGFLIEPISITEKALEHAYASRSAFDWDPSSAFVLGNGSLGLLT 188

Query: 112 MLAARAF--GAPRIVIV---DVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMG 166
           +   +    G   +  +   D  D  + + ++L A  +    T ++D+ +  E       
Sbjct: 189 LAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVEDVPDVYE------- 241

Query: 167 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAA 213
             +D  ++  GF K    ++ A    G   L+G+           A 
Sbjct: 242 -QMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAF 287

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score =  226 bits (577), Expect = 4e-73
 Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 23/229 (10%)

Query: 1   KVGSEV------KTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLAN 54
           + G E       K    G+ V  E  + C  C  C  G  N C     LG   V G  A 
Sbjct: 105 EAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNELGFN-VDGAFAE 163

Query: 55  QVVHPADLCFKLPD-------NVSLEEGAMCEPLSVGVHAC--RRANIGPETNVLIMGSG 105
            V   A   + L +       +     G++ EP SV  +A   R   I P  NV+I+G G
Sbjct: 164 YVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGG 223

Query: 106 PIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAM 165
           PIGL  +   +  GA ++++ +  + R ++AK+LGAD+++  +   ++  E V       
Sbjct: 224 PIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTK--ENFVEAVLDY--TN 279

Query: 166 GTGIDVSFDCAGFNKTMSTALSATRA---GGKVCLVGMGHREMTVPLTP 211
           G G  +  +  G  + +   +        G    +  +   +  +PLT 
Sbjct: 280 GLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTG 328

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score =  193 bits (492), Expect = 8e-61
 Identities = 41/231 (17%), Positives = 74/231 (32%), Gaps = 26/231 (11%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESK--GLGSPPVHGCLANQVVHP 59
           V         GD V       C  C  C  GR + C   +    G   + G +       
Sbjct: 72  VEESYHGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDD 131

Query: 60  ADLCFKLPDNVSLEEGAMCEPLSVGVHACRRA--------------NIGPETNVLIMGSG 105
                K+P ++  + G + +PL+    +                         VL++G+G
Sbjct: 132 PKYLVKIPKSIE-DIGILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTG 190

Query: 106 PIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAM 165
           PIG++  L  R +G    +    +   +               TN  + +   +K++ ++
Sbjct: 191 PIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETK------TNYYNSSNGYDKLKDSV 244

Query: 166 GTGIDVSFDCAGFNKT-MSTALSATRAGGKVCLVGMGHREMTVPLTPAAAS 215
           G   DV  D  G +   +   +      G + L G      +VPL      
Sbjct: 245 G-KFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFS-TSGSVPLDYKTLQ 293

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score =  171 bits (436), Expect = 3e-52
 Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 19/229 (8%)

Query: 1   KVGSEVK-----TLVPGDRVALEPGISCWQCDYCK-GGRYNLCPESKGLGSP-------P 47
           +V  E +      L PGD +    GI+C +C +CK      LCP  K  G          
Sbjct: 85  EVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPH 144

Query: 48  VHGCLANQ-VVHPADLCFKLPDNVSLEEGAMCEP-LSVGVHACRR-ANIGPETNVLIMGS 104
           + GC ++  V+ P     K+ +   L+  AM     +   HA            V+I G+
Sbjct: 145 LRGCYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGA 204

Query: 105 GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQK 163
           GP+GL  ++ AR+ GA  ++++     RL +A+++GAD  +    T++++  + +  I  
Sbjct: 205 GPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDI-- 262

Query: 164 AMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPA 212
             G G D   +  G ++ +       R GG   + G+   +  VP    
Sbjct: 263 THGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVY 311

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score =  156 bits (397), Expect = 8e-47
 Identities = 56/214 (26%), Positives = 87/214 (40%), Gaps = 9/214 (4%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKG--LGSPPVHGCLANQV-V 57
           +VGSEVK   PGDRV +      W+    + G +            S    G       V
Sbjct: 67  EVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHV 126

Query: 58  HPADL-CFKLPDNVSLEEGAMC-EPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAA 115
           + AD+    LP  + LE   M  + ++ G H    ANI     V ++G GP+GL+++  A
Sbjct: 127 NDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGA 186

Query: 116 RAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC 175
              GA RI  V    +   +A + GA +I+       DI E++ K     G G+D     
Sbjct: 187 NHLGAGRIFAVGSRKHCCDIALEYGATDIINYKN--GDIVEQILKATD--GKGVDKVVIA 242

Query: 176 AGFNKTMSTALSATRAGGKVCLVGMGHREMTVPL 209
            G   T + A+   + G  +  V        + +
Sbjct: 243 GGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDI 276

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  152 bits (386), Expect = 4e-45
 Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 13/214 (6%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VG EV     GD VA+ P      C YC+ G  +LC   + LG     G  A  V+ P 
Sbjct: 76  EVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGI-NFDGAYAEYVIVPH 134

Query: 61  DLCFKLPDNVSLEEGAMCEPLS-VGV---HACRRANIGPETNVLIMG-SGPIGLVTMLAA 115
                    ++  E A   PL+  G+    A R+A++ P   +L++G  G +G + +  A
Sbjct: 135 YKYMYKLRRLNAVEAA---PLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIA 191

Query: 116 RAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC 175
           +A     I+ VDV +  +  AK+ GAD ++  S   QD   E+ +I +    G+D   D 
Sbjct: 192 KAVSGATIIGVDVREEAVEAAKRAGADYVINASM--QDPLAEIRRITE--SKGVDAVIDL 247

Query: 176 AGFNKTMSTALSATRAGGKVCLVGMGHREMTVPL 209
               KT+S    A    GK  +VG+   ++    
Sbjct: 248 NNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHA 281

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  144 bits (365), Expect = 6e-42
 Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 13/215 (6%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +V   V+ L  GD V L P ++   C  C+ G    C   +  G   + G  A  +    
Sbjct: 87  EVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGL-NIDGGFAEFMRTSH 145

Query: 61  DLCFKLPDNVSLEEGAMCEPLS-VGV---HACRRA--NIGPETNVLIMGSGPIGLVTMLA 114
               KLP ++S E+     PL+  G+    A ++A   + P   V I+G G +G + +  
Sbjct: 146 RSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQL 205

Query: 115 ARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD 174
            +      ++ +DV + +L +A++LGAD++V      +D  ++V ++ +  G G++V+ D
Sbjct: 206 LKVMTPATVIALDVKEEKLKLAERLGADHVVDAR---RDPVKQVMELTR--GRGVNVAMD 260

Query: 175 CAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPL 209
             G   T+          G++ +VG G  E+  P 
Sbjct: 261 FVGSQATVDYTPYLLGRMGRLIIVGYGG-ELRFPT 294

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  143 bits (363), Expect = 1e-41
 Identities = 57/217 (26%), Positives = 91/217 (41%), Gaps = 14/217 (6%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPP----VHGCLANQV 56
           ++G  V     GD VA+     C  C  C  GR N C  +  LG  P      G +A  +
Sbjct: 70  ELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYM 129

Query: 57  VHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRR--ANIGPETNVLIMGSGPIGLVTM 112
           +  +        ++     A      L+   HA  R    +GP +  +++G G +G V +
Sbjct: 130 IVDSARHLVPIGDLDPVAAAPLTDAGLTPY-HAISRVLPLLGPGSTAVVIGVGGLGHVGI 188

Query: 113 LAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS 172
              RA  A R++ VD+DD RL++A+++GAD  VK        A+ + ++    G G    
Sbjct: 189 QILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGA---GAADAIRELTG--GQGATAV 243

Query: 173 FDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPL 209
           FD  G   T+ TA       G + +VG+         
Sbjct: 244 FDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVG 280

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  128 bits (324), Expect = 5e-36
 Identities = 48/218 (22%), Positives = 88/218 (40%), Gaps = 20/218 (9%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VG E+  +  GD V +        C YC+ G++N+C      G    +G  +  ++  +
Sbjct: 73  EVG-ELAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQ-TTNGGFSEYMLVKS 130

Query: 61  DLCFKLPDNVSLEEGAMCEPLSV-GV---HACRRA----NIGPETNVLIMGSGPIGLVTM 112
                  +++S  E A   PL+  G     A R+A    +   E  V++ G G + + T+
Sbjct: 131 SRWLVKLNSLSPVEAA---PLADAGTTSMGAIRQALPFISKFAEPVVIVNGIGGLAVYTI 187

Query: 113 LAARAFGA-PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDV 171
              +A      IV +         A +LGAD +      ++D    + K+    G G  +
Sbjct: 188 QILKALMKNITIVGISRSKKHRDFALELGADYVS----EMKDAESLINKLTD--GLGASI 241

Query: 172 SFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPL 209
           + D  G  +T           G + LVGM  + +++  
Sbjct: 242 AIDLVGTEETTYNLGKLLAQEGAIILVGMEGKRVSLEA 279

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score =  122 bits (308), Expect = 2e-33
 Identities = 54/229 (23%), Positives = 92/229 (40%), Gaps = 35/229 (15%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP---------PVHGCL 52
            G +V+ L  GD V++   ++C +C  CK     +C       +             G  
Sbjct: 76  KGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQ 135

Query: 53  ANQVVHP-ADL-CFKLPDNVSLEEG-----AMCEPLSVGVHACRRANIGPETNVLIMGSG 105
           A  V+ P AD    KLPD     E       + + L  G H    A +GP + V + G+G
Sbjct: 136 AEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAG 195

Query: 106 PIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAM 165
           P+GL    +AR  GA  +++ D++  RL+ AK  G +      +    + E++  +    
Sbjct: 196 PVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIA--DLSLDTPLHEQIAALLG-- 251

Query: 166 GTGIDVSFDCAGF---------------NKTMSTALSATRAGGKVCLVG 199
              +D + D  GF                  +++ +  TR  GK+ + G
Sbjct: 252 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score =  121 bits (307), Expect = 3e-33
 Identities = 54/238 (22%), Positives = 92/238 (38%), Gaps = 36/238 (15%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE------------------SKG 42
            +G  V  L  GD V L  G  C +C  C  G    C E                  +  
Sbjct: 73  AIGPNVTELQVGDHVVLSYG-YCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHD 131

Query: 43  LGSPPVH----GCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVH-----ACRRANI 93
            G    H       A   +   +   K+  +V +E      PL  G+            +
Sbjct: 132 QGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLG---PLGCGIQTGAGACINALKV 188

Query: 94  GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQD 153
            P ++ +  G+G +GL  +LAA+  GA  I+ VD+ + RL +AK+LGA +++    N + 
Sbjct: 189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVI----NSKT 244

Query: 154 IAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTP 211
             + V  I++    G++ + +  G  + +   + A    GK+ +VG      T     
Sbjct: 245 -QDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDV 301

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score =  121 bits (305), Expect = 7e-33
 Identities = 56/230 (24%), Positives = 93/230 (40%), Gaps = 37/230 (16%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESK----------GLGSPPVHGC 51
            GS+V+ +  GD V++   ++C +C  CK  R ++C  +           G       G 
Sbjct: 75  KGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGG 134

Query: 52  LANQV-VHPADL-CFKLPDNVSLEEG-----AMCEPLSVGVHACRRANIGPETNVLIMGS 104
            A  V V  AD    K  D     E       + + L  G H C  A + P ++V I G+
Sbjct: 135 QAEYVLVPYADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGCVSAGVKPGSHVYIAGA 194

Query: 105 GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKA 164
           GP+G      AR  GA  +++ D +  RL +    G + I     +L++ A   ++I + 
Sbjct: 195 GPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETI-----DLRNSAPLRDQIDQI 249

Query: 165 M-GTGIDVSFDCAGF--------------NKTMSTALSATRAGGKVCLVG 199
           +    +D   D  GF              N  +++     RAGG + + G
Sbjct: 250 LGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score =  110 bits (278), Expect = 4e-29
 Identities = 60/238 (25%), Positives = 95/238 (39%), Gaps = 34/238 (14%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE-----SKGL-----------G 44
            VG  V  L  GD V       C +C +C   + NLC +      KGL           G
Sbjct: 74  SVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKG 133

Query: 45  SPPVH----GCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVH-----ACRRANIGP 95
              +H       +   V       K+     L++  +   L  G+      A   A + P
Sbjct: 134 KTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCL---LGCGISTGYGAAVNTAKLEP 190

Query: 96  ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIA 155
            +   + G G +GL  ++  +  GA RI+ VD++  + + AK+ GA   +    N QD +
Sbjct: 191 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI----NPQDFS 246

Query: 156 EEV-EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHREMTVPLTP 211
           + + E + +    G+D SF+C G  K M  AL A   G G   +VG+      +   P
Sbjct: 247 KPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRP 304

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score =  109 bits (276), Expect = 7e-29
 Identities = 59/238 (24%), Positives = 96/238 (40%), Gaps = 34/238 (14%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE-----SKGL-----------G 44
            +G  V T+ PGD+V       C +C  CK    N C +      +G            G
Sbjct: 75  SIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRG 134

Query: 45  SPPVH----GCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVH-----ACRRANIGP 95
            P  H       +   V       K+     LE+  +   +  G       A + A +  
Sbjct: 135 KPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCL---IGCGFSTGYGSAVKVAKVTQ 191

Query: 96  ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIA 155
            +   + G G +GL  ++  +A GA RI+ VD++  + + AK++GA   V    N QD  
Sbjct: 192 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECV----NPQDYK 247

Query: 156 EEV-EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHREMTVPLTP 211
           + + E + +    G+D SF+  G   TM TALS  +   G   +VG+      + + P
Sbjct: 248 KPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNP 305

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  109 bits (274), Expect = 7e-29
 Identities = 67/220 (30%), Positives = 97/220 (44%), Gaps = 30/220 (13%)

Query: 1   KVGSEVKTLVPGDRVALEPGI-----SCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQ 55
            VGS V  +  GDRV    G+     +C  C++C  G   LC + +  G   V+G     
Sbjct: 71  AVGSGVSRVKEGDRV----GVPWLYSACGYCEHCLQGWETLCEKQQNTGY-SVNGGYGEY 125

Query: 56  VVHPADLCFKLPDNVSLEEGA--MCEPLSVGV---HACRRANIGPETNVLIMGSGPIGLV 110
           VV   +    LPD V   E A  +C     GV      +  +  P   V+I G G  GL 
Sbjct: 126 VVADPNYVGLLPDKVGFVEIAPILC----AGVTVYKGLKVTDTRPGQWVVISGIG--GLG 179

Query: 111 TMLA--ARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTG 168
            +    ARA G  R+  VD+DD +L++A++LGA+  V  + +  D A     +QK +G G
Sbjct: 180 HVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAV-NARD-TDPAAW---LQKEIG-G 232

Query: 169 IDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVP 208
                  A   K  S A+   R GG + L G+   +   P
Sbjct: 233 AHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPPGDFGTP 272

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score =  109 bits (275), Expect = 1e-28
 Identities = 57/233 (24%), Positives = 90/233 (38%), Gaps = 27/233 (11%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE-----SKGL-----------GS 45
           +G+ V  + PGD+V       C  C  CK    N C +       GL           G 
Sbjct: 77  IGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGK 136

Query: 46  PPVH----GCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHAC-RRANIGPETNVL 100
           P  +           V       K+     LE   +    + G  A    A + P +   
Sbjct: 137 PIYNLMGTSTFTEYTVVADIAVAKIDPKAPLESCLIGCGFATGYGAAVNTAKVTPGSTCA 196

Query: 101 IMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV-E 159
           + G G +G   ++  +A GA RI+ V     +   A +LGA   +    N +D  + + E
Sbjct: 197 VFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECL----NPKDYDKPIYE 252

Query: 160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHREMTVPLTP 211
            I +    G+D + +CAG  +TM  AL +T  G G   ++G+      +PL P
Sbjct: 253 VICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDP 305

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score =  109 bits (274), Expect = 1e-28
 Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 38/239 (15%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP-------------- 46
            VG  V    PGD+V       C +C  C     NLC + +    P              
Sbjct: 75  SVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRF 134

Query: 47  -----PVH-----GCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVH-----ACRRA 91
                 ++        +   V       ++ D  +LE       +  G       A   A
Sbjct: 135 TCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVC---LIGCGFSSGYGAAINTA 191

Query: 92  NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNL 151
            + P +   + G G +GL  ++  +  GA RI+ +D++  +   AK LGA + +    N 
Sbjct: 192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCL----NP 247

Query: 152 QDIAEEV-EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHREMTVP 208
           +++ + V + I +    G+D S DCAG  +T+  A+  T  G G   +VG    EMT+P
Sbjct: 248 RELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIP 306

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score =  107 bits (269), Expect = 1e-27
 Identities = 47/218 (21%), Positives = 79/218 (36%), Gaps = 23/218 (10%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           + G  V+   PGD V + P     + +    G   L  E +  G     G LA   V  A
Sbjct: 123 RTGIGVRRWKPGDHVIVHPAH-VDEQEPATHGDGMLGTEQRAWGFETNFGGLAEYGVVRA 181

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVG-----VHACRRANIGPETNVLIMG-SGPIGLVTMLA 114
                 P +++ EE A   PL  G     + + R A +     VLI G SG +G   +  
Sbjct: 182 SQLLPKPAHLTWEEAA-VSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQF 240

Query: 115 ARAFGAPRIVIVDVDDYRLSVAKKLGADNIV-------------KVSTNLQDIAEEVEKI 161
            +  G   + +V     + +  + LG D ++                  ++   +  + +
Sbjct: 241 VKNGGGIPVAVVSSAQ-KEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLV 299

Query: 162 QKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG 199
            +  G   D+ F+  G   T   ++   R GG V   G
Sbjct: 300 VEKAGREPDIVFEHTG-RVTFGLSVIVARRGGTVVTCG 336

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  106 bits (266), Expect = 1e-27
 Identities = 74/218 (33%), Positives = 102/218 (46%), Gaps = 26/218 (11%)

Query: 1   KVGSEVKTLVPGDRVALEPGI-----SCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQ 55
           +VG  V  L  GDRV    GI     +C  CDYC  G+  LC   K  G   V G  A  
Sbjct: 69  EVGPGVTHLKVGDRV----GIPWLYSACGHCDYCLSGQETLCEHQKNAGYS-VDGGYAEY 123

Query: 56  VVHPADLCFKLPDNVSLEEGA--MCEPLSVGV---HACRRANIGPETNVLIMGSGPIGLV 110
               AD   K+PDN+S EE A   C     GV    A +     P   V I G G +G V
Sbjct: 124 CRAAADYVVKIPDNLSFEEAAPIFC----AGVTTYKALKVTGAKPGEWVAIYGIGGLGHV 179

Query: 111 TMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGID 170
            +  A+A G   +V VD+ D +L +AK+LGAD +V      +D A+    +++ +G G+ 
Sbjct: 180 AVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVV-NPLK-EDAAKF---MKEKVG-GVH 232

Query: 171 VSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVP 208
            +   A       +A ++ R GG   LVG+   EM +P
Sbjct: 233 AAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIP 270

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score =  106 bits (266), Expect = 2e-27
 Identities = 54/229 (23%), Positives = 87/229 (37%), Gaps = 34/229 (14%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE-----SKGL-----------G 44
            VG  V    PG++V       C +C +C+  + N C +     S  +           G
Sbjct: 76  SVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKG 135

Query: 45  SPPVH----GCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVH-----ACRRANIGP 95
              +        +   V       K+  +  L+   +   L  GV      A   A + P
Sbjct: 136 RKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCL---LGCGVSTGFGAAVNTAKVEP 192

Query: 96  ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIA 155
            +   + G G +GL  ++   + GA RI+ VD++  +   AK  GA + V    N  D +
Sbjct: 193 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFV----NPNDHS 248

Query: 156 EEV-EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGH 202
           E + + + K    G+D S +C G    M  AL +   G G   LVG   
Sbjct: 249 EPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTD 297

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score =  105 bits (264), Expect = 2e-27
 Identities = 65/203 (32%), Positives = 91/203 (44%), Gaps = 12/203 (5%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD 61
           VG  V+   PGD V + PG+SC +C+ C  G  NLCP  + LG    HG  A  VV P  
Sbjct: 72  VGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHR-HGTYAEYVVLPEA 130

Query: 62  LCFKLPDNVSLEEGAMCEPLSVGV--HA-CRRANIGPETNVLIMG-SGPIGLVTMLAARA 117
                P N+S EE A   PL+          +  + P  +VL+M     + +  +  A+ 
Sbjct: 131 NLAPKPKNLSFEEAA-AIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKL 189

Query: 118 FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG 177
           FGA  I     +D +L  AK LGAD  V  +    D  +EV ++    G G D   D  G
Sbjct: 190 FGARVIATAGSED-KLRRAKALGADETVNYTH--PDWPKEVRRLTG--GKGADKVVDHTG 244

Query: 178 FNKTMSTALSATRAGGKVCLVGM 200
                   + AT  GG++ + G 
Sbjct: 245 -ALYFEGVIKATANGGRIAIAGA 266

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score =  105 bits (264), Expect = 3e-27
 Identities = 53/216 (24%), Positives = 85/216 (39%), Gaps = 17/216 (7%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD 61
           VG  V    PGDRV                GR    P  + LG     G L+  VV P  
Sbjct: 98  VGKSVTRFRPGDRVISTFAPGWLDGLRPGTGR---TPAYETLGGA-HPGVLSEYVVLPEG 153

Query: 62  LCFKLPDNVSLEEGAMCEPLSVGV---HA-CRRANIGPETNVLIMGSGPIGLVTMLAARA 117
                P ++   E +   P   G+    A   + ++     V++ G+G + L  +  A+A
Sbjct: 154 WFVAAPKSLDAAEAS-TLPC-AGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKA 211

Query: 118 FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG 177
            GA  IV     + +L  A  LGAD+ +      +D  E V  +      G D   + AG
Sbjct: 212 TGAEVIVTSSSRE-KLDRAFALGADHGINRLE--EDWVERVYALTG--DRGADHILEIAG 266

Query: 178 FNKTMSTALSATRAGGKVCLVG-MGHREMTVPLTPA 212
               +  +L A    G++ ++G +   E++ P+ P 
Sbjct: 267 -GAGLGQSLKAVAPDGRISVIGVLEGFEVSGPVGPL 301

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  104 bits (262), Expect = 5e-27
 Identities = 52/213 (24%), Positives = 82/213 (38%), Gaps = 29/213 (13%)

Query: 1   KVGSEVKTLVPGDRVALEPGI-----SCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQ 55
            +G  VK    GD      GI     SC  C+YC+ G  + CP +   G     G     
Sbjct: 74  GMGENVKGWKIGDYA----GIKWLNGSCMACEYCELGNESNCPHADLSGYT-HDGSFQQY 128

Query: 56  VVHPADLCFKLPDNVSLEEGA--MCEPLSVGV---HACRRANIGPETNVLIMGSGPIGLV 110
               A     +P    L + A  +C     G+    A + AN+     V I G+   GL 
Sbjct: 129 ATADAVQAAHIPQGTDLAQVAPILC----AGITVYKALKSANLMAGHWVAISGAAG-GLG 183

Query: 111 TMLA---ARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGT 167
           ++ A   A+A G  R++ +D  + +  + + +G +  +   T  +DI   V    KA   
Sbjct: 184 SL-AVQYAKAMGY-RVLGIDGGEGKEELFRSIGGEVFI-DFTKEKDIVGAV---LKATDG 237

Query: 168 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM 200
           G     + +     +  +    RA G   LVGM
Sbjct: 238 GAHGVINVSVSEAAIEASTRYVRANGTTVLVGM 270

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score =  104 bits (260), Expect = 2e-26
 Identities = 48/221 (21%), Positives = 77/221 (34%), Gaps = 29/221 (13%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           + G  V     GD V      S             L PE +  G     G LA   +  +
Sbjct: 131 RTGPGVNAWQAGDEVVAHCL-SVELESSDGHNDTMLDPEQRIWGFETNFGGLAEIALVKS 189

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVG-----VHACRRANIGPETNVLIMG-SGPIGLVTMLA 114
           +     PD++S EE A    L        + +   A +    NVLI G SG +G      
Sbjct: 190 NQLMPKPDHLSWEEAA-APGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQF 248

Query: 115 ARAFGAPRIVIVDV-DDYRLSVAKKLGADNIV---------------KVSTNLQDIAEEV 158
           A A GA    I  V    +  + + +GA+ I+               +     +   + +
Sbjct: 249 ALAGGA--NPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRI 306

Query: 159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG 199
            ++    G  ID+ F+  G  +T   ++  TR GG +    
Sbjct: 307 RELTG--GEDIDIVFEHPG-RETFGASVFVTRKGGTITTCA 344

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 81.4 bits (202), Expect = 2e-18
 Identities = 56/233 (24%), Positives = 86/233 (36%), Gaps = 42/233 (18%)

Query: 1   KVGSEVKTLV-PGDRVALEPGI-----SCWQCDYCKGGRYNLCPE------SKGLGSPPV 48
           K+G +  + +  G RV    G+     SC +CD CK      C +               
Sbjct: 76  KLGPKSNSGLKVGQRV----GVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVS 131

Query: 49  HGCLANQVVHPADLCFKLPDNVSLEEGA--MC------EPLSVGVHACRRANIGPETNVL 100
            G  AN V         +P+N+     A  +C       PL        R   GP   V 
Sbjct: 132 QGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPL-------VRNGCGPGKKVG 184

Query: 101 IMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEK 160
           I+G G IG +  L ++A GA   VI      R   A K+GAD+ +  +       EE + 
Sbjct: 185 IVGLGGIGSMGTLISKAMGAETYVISRSSRKR-EDAMKMGADHYI-ATL------EEGDW 236

Query: 161 IQKAMGTGIDVSFDCAGFNKTMSTA--LSATRAGGKVCLVGMGHREMTVPLTP 211
            +K   T  D+   CA     +       A + GG++  + +  +   + L P
Sbjct: 237 GEKYFDT-FDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQHEMLSLKP 288

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 78.0 bits (193), Expect = 2e-17
 Identities = 59/231 (25%), Positives = 97/231 (41%), Gaps = 40/231 (17%)

Query: 1   KVGSEVKTLVPGDRVALEPGI-----SCWQCDYCKGGRYNLCPE------SKGLGSPPVH 49
           +VGS+VK +  GD+V    G+     +C  C+ C     N CP+      S        +
Sbjct: 84  EVGSKVKKVNVGDKV----GVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITY 139

Query: 50  GCLANQVVHPADLCFKLPDNVSLEEGA--MC------EPLSVGVHACRRANIG-PETNVL 100
           G  +N +V       + PDN+ L+ GA  +C       PL       +   +  P  ++ 
Sbjct: 140 GGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPL-------KYFGLDEPGKHIG 192

Query: 101 IMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEK 160
           I+G G +G V +  A+AFG+   VI      +    K  GAD+ + VS +        E+
Sbjct: 193 IVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFL-VSRD-------QEQ 244

Query: 161 IQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTP 211
           +Q A GT +D   D       +       ++ GK+ LVG   + + +P   
Sbjct: 245 MQAAAGT-LDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEKPLELPAFS 294

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 77.6 bits (192), Expect = 3e-17
 Identities = 49/231 (21%), Positives = 86/231 (37%), Gaps = 40/231 (17%)

Query: 1   KVGSEVKTLVPGDRVALEPGI-----SCWQCDYCKGGRYNLCPE------SKGLGSPPVH 49
           +VGS+V     GD V    G+      C  C  C+      CP+         +   P  
Sbjct: 77  EVGSDVSKFTVGDIV----GVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQ 132

Query: 50  GCLANQVVHPADLCFKLPDNVSLEEGA--MC------EPLSVGVHACRRANIG-PETNVL 100
           G  A   V       K+P+ +++E+ A  +C       PL           +  P     
Sbjct: 133 GGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPL-------SHFGLKQPGLRGG 185

Query: 101 IMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEK 160
           I+G G +G + +  A+A G    VI   +  R    + LGAD+ V + ++         K
Sbjct: 186 ILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYV-IGSD-------QAK 237

Query: 161 IQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTP 211
           + +   + +D   D    +  +   LS  +  GK+ L+G+ +  +      
Sbjct: 238 MSELADS-LDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPL 287

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 76.5 bits (189), Expect = 8e-17
 Identities = 45/234 (19%), Positives = 76/234 (32%), Gaps = 47/234 (20%)

Query: 1   KVGSEVKTLVPGDRVALEPGI-----SCWQCDYCKGGRYNLCPES--------KGLGSPP 47
           +VG  VK    GD V    G+     SC  C  CK  +   C +             + P
Sbjct: 72  EVGKGVKKFKIGDVV----GVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEP 127

Query: 48  VHGCLANQVVHPADLCFKLPDNVSLEEGA--MC------EPLSVGVHACRRANIGPETNV 99
             G  +N +V   +    +  N  LE+ A  +C       PL       + + +   T V
Sbjct: 128 HMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPL-------KFSKVTKGTKV 180

Query: 100 LIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE 159
            + G G +G + +  A A GA   V    +  +   A  +G  +                
Sbjct: 181 GVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKK-QDALSMGVKHFY-TDP---------- 228

Query: 160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAA 213
             ++     +D        +  +   L      G + LVG+   E+   L+   
Sbjct: 229 --KQCKEE-LDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPVLSVFD 279

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 76.2 bits (188), Expect = 1e-16
 Identities = 36/216 (16%), Positives = 66/216 (30%), Gaps = 39/216 (18%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            VGS V  L PGD V                             +    G    + V   
Sbjct: 98  AVGSNVTGLKPGDWVI---------------------------PANAGLGTWRTEAVFSE 130

Query: 61  DLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMG-SGPIGLVTMLAARA 117
           +   ++P ++ L+  A     P +          + P  +V+    +  +G   +  A A
Sbjct: 131 EALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAA 190

Query: 118 FGAPRIVIV---DVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD 174
            G   I +V             K LGA++++          E     +        ++ +
Sbjct: 191 LGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEE--LRRPEMKNFFKD--MPQPRLALN 246

Query: 175 CAGFNKTMSTALSATRAGGKVCLVG-MGHREMTVPL 209
           C G  K+ +  L     GG +   G M  + +   +
Sbjct: 247 CVG-GKSSTELLRQLARGGTMVTYGGMAKQPVVASV 281

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 75.7 bits (187), Expect = 2e-16
 Identities = 48/221 (21%), Positives = 76/221 (34%), Gaps = 42/221 (19%)

Query: 1   KVGSEVKTLVPGDRVALEPGI-----SCWQCDYCKGGRYNLCPESKG-------LGSPPV 48
            VG +V+   PGD V    G+     SC  C+ C+ G  N C    G             
Sbjct: 90  AVGDQVEKYAPGDLV----GVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHT 145

Query: 49  HGCLANQVVHPADLCFKLPDNVSLEEGA---MC------EPLSVGVHACRRANIGPETNV 99
            G  + Q+V       ++             +C       PL       R    GP   V
Sbjct: 146 LGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPL-------RHWQAGPGKKV 198

Query: 100 LIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE 159
            ++G G +G + +  A A GA  +     +  R   AK LGAD +V  S N        +
Sbjct: 199 GVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKR-EAAKALGADEVV-NSRN-------AD 249

Query: 160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM 200
           ++   + +  D   +       +    +  +  G + LVG 
Sbjct: 250 EMAAHLKS-FDFILNTVAAPHNLDDFTTLLKRDGTMTLVGA 289

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 73.4 bits (181), Expect = 1e-15
 Identities = 38/204 (18%), Positives = 66/204 (32%), Gaps = 38/204 (18%)

Query: 2   VGSEVKT-LVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            G E     + G RVA   G+S                           G  A   V  A
Sbjct: 94  GGDEPYAKSLVGKRVAFATGLS-------------------------NWGSWAEYAVAEA 128

Query: 61  DLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMG-SGPIGL-VTMLAAR 116
             C  L D V  E+GA  +  PL+  +          E   ++   +  +   +  L A+
Sbjct: 129 AACIPLLDTVRDEDGAAMIVNPLTA-IAMFDIVKQEGEKAFVMTAGASQLCKLIIGL-AK 186

Query: 117 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA 176
             G   IV V  D+ ++++ K +GA +++       D    + ++ K       +  D  
Sbjct: 187 EEGFRPIVTVRRDE-QIALLKDIGAAHVLNEKA--PDFEATLREVMK--AEQPRIFLDAV 241

Query: 177 GFNKTMSTALSATRAGGKVCLVGM 200
                 S   +A     +  + G 
Sbjct: 242 T-GPLASAIFNAMPKRARWIIYGR 264

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 72.6 bits (179), Expect = 2e-15
 Identities = 41/205 (20%), Positives = 70/205 (34%), Gaps = 40/205 (19%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD 61
           VG        GDRV                G Y                  A   +    
Sbjct: 102 VGDNASAFKKGDRVF---------TSSTISGGY------------------AEYALAADH 134

Query: 62  LCFKLPDNVSLEEGAMCEPLSVG-VHAC--RRANIGPETNVLIMG-SGPIGLVTMLAARA 117
             +KLP+ +  ++GA    +     +      A +    +VL+ G SG +GL     ARA
Sbjct: 135 TVYKLPEKLDFKQGA-AIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARA 193

Query: 118 FGAPRIVIVDV-DDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA 176
           +G    ++     +    +  + GA  +        +  ++++K       GID+  +  
Sbjct: 194 YGL--KILGTAGTEEGQKIVLQNGAHEVFNHRE--VNYIDKIKKYVG--EKGIDIIIEML 247

Query: 177 GFNKTMSTALSATRAGGKVCLVGMG 201
             N  +S  LS    GG+V +VG  
Sbjct: 248 A-NVNLSKDLSLLSHGGRVIVVGSR 271

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 70.9 bits (174), Expect = 9e-15
 Identities = 40/232 (17%), Positives = 74/232 (31%), Gaps = 54/232 (23%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           KVGS V +L  GD V                             S    G      +   
Sbjct: 86  KVGSNVSSLEAGDWVI---------------------------PSHVNFGTWRTHALGND 118

Query: 61  DLCFKL-----------PDNVSLEEGAMCEPLSV----GVHAC-RRANIGPETNVLIM-- 102
           D   KL           P+ +++ +GA    +SV              + P  +  I   
Sbjct: 119 DDFIKLPNPAQSKANGKPNGLTINQGAT---ISVNPLTAYLMLTHYVKLTPGKDWFIQNG 175

Query: 103 GSGPIGLVTMLAARAFGAPRIVIV---DVDDYRLSVAKKLGADNIVKVST-NLQDIAEEV 158
           G+  +G       +      I ++      D  ++  K+LGA  ++     N ++    +
Sbjct: 176 GTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTI 235

Query: 159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG-MGHREMTVPL 209
           ++  K  G    ++ +C G  K+ +         G +   G M  + +T+P 
Sbjct: 236 KEWIKQSGGEAKLALNCVG-GKSSTGIARKLNNNGLMLTYGGMSFQPVTIPT 286

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 70.7 bits (174), Expect = 1e-14
 Identities = 37/202 (18%), Positives = 62/202 (30%), Gaps = 37/202 (18%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD 61
           VG+ V   + G RV    G                             G     V   AD
Sbjct: 77  VGAFVSRELIGKRVLPLRG----------------------------EGTWQEYVKTSAD 108

Query: 62  LCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMG-SGPIGLVTMLAARAF 118
               +PD++     A     PL+  V      N+     +L+      IG +    ++  
Sbjct: 109 FVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQIL 168

Query: 119 GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGF 178
               I +   +        +LGA  ++  ST    + E V ++    G G D + D  G 
Sbjct: 169 NFRLIAVTRNNK-HTEELLRLGAAYVIDTST--APLYETVMELTN--GIGADAAIDSIG- 222

Query: 179 NKTMSTALSATRAGGKVCLVGM 200
               +    + R  G    +G+
Sbjct: 223 GPDGNELAFSLRPNGHFLTIGL 244

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 70.0 bits (171), Expect = 2e-14
 Identities = 28/196 (14%), Positives = 60/196 (30%), Gaps = 37/196 (18%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           + GS         +     G + +                            +     PA
Sbjct: 104 EAGSSPAAQALMGKTVAAIGGAMY----------------------------SQYRCIPA 135

Query: 61  DLCFKLPDNVSLEEGAMC--EPLSVGVHACRRANIGPETNVLIMG-SGPIGLVTMLAARA 117
           D C  LP+  +  +GA     PL+  +       +   + ++    +  +G +       
Sbjct: 136 DQCLVLPEGATPADGASSFVNPLTA-LGMVETMRLEGHSALVHTAAASNLGQMLNQICLK 194

Query: 118 FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG 177
            G   + IV   + +  + K  GA ++   +       +++ +    + TG  ++FD  G
Sbjct: 195 DGIKLVNIVRKQE-QADLLKAQGAVHV--CNAASPTFMQDLTEA--LVSTGATIAFDATG 249

Query: 178 FNKTMSTALSATRAGG 193
             K     L+   A  
Sbjct: 250 GGKLGGQILTCMEAAL 265

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 69.2 bits (170), Expect = 3e-14
 Identities = 48/203 (23%), Positives = 75/203 (36%), Gaps = 36/203 (17%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           KVGS VK +  GDRV            Y +                   G  ++     A
Sbjct: 71  KVGSGVKHIKAGDRVV-----------YAQSA----------------LGAYSSVHNIIA 103

Query: 61  DLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMG-SGPIGLVTMLAARA 117
           D    LP  +S E+ A    + L+V     +   I P+   L    +G +GL+    A+A
Sbjct: 104 DKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKA 163

Query: 118 FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG 177
            GA  I  V     +   A K GA  ++      +D+ E +++I    G  + V +D  G
Sbjct: 164 LGAKLIGTVGTAQ-KAQSALKAGAWQVINYRE--EDLVERLKEITG--GKKVRVVYDSVG 218

Query: 178 FNKTMSTALSATRAGGKVCLVGM 200
              T   +L   +  G +   G 
Sbjct: 219 -RDTWERSLDCLQRRGLMVSFGN 240

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 69.2 bits (170), Expect = 3e-14
 Identities = 39/204 (19%), Positives = 61/204 (29%), Gaps = 44/204 (21%)

Query: 2   VGSEVKTLVPGDRV-ALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +G  VK    GDRV A                                    A  V  P 
Sbjct: 75  LGDSVKGYEIGDRVMAFVNY-----------------------------NAWAEVVCTPV 105

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVG-VHAC--RRANIGPETNVLI-MGSGPIGLVTMLAAR 116
           +  +K+PD++S  E A   P++    +      AN+    +VL+    G +G        
Sbjct: 106 EFVYKIPDDMSFSEAA-AFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCS 164

Query: 117 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA 176
                  V      ++    K        +      D  +EV++I      G+D+  DC 
Sbjct: 165 TVPN-VTVFGTASTFKHEAIKDSVTHLFDRN----ADYVQEVKRIS---AEGVDIVLDCL 216

Query: 177 GFNKTMSTALSATRAGGKVCLVGM 200
                    LS  +  G   L G 
Sbjct: 217 C-GDNTGKGLSLLKPLGTYILYGS 239

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 68.3 bits (168), Expect = 5e-14
 Identities = 48/201 (23%), Positives = 74/201 (36%), Gaps = 44/201 (21%)

Query: 3   GSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADL 62
           G EV  +V G R A                          L      G LA +V  P   
Sbjct: 60  GMEVVGVVEGRRYA-------------------------ALVP---QGGLAERVAVPKGA 91

Query: 63  CFKLPDNVSLEEGAMCEPLSVG--VHACRRANIGPETNVLIMG-SGPIGLVTMLAARAFG 119
              LP+ +S EE A   P+S      A +RA   P   VL+   +G +G   +  ARA G
Sbjct: 92  LLPLPEGLSPEEAA-AFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMG 150

Query: 120 APRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFN 179
              +      + +L++   LGA+            AE  E+ +     G+D+  +  G  
Sbjct: 151 LRVLAAASRPE-KLALPLALGAEEAA-------TYAEVPERAKA--WGGLDLVLEVRG-- 198

Query: 180 KTMSTALSATRAGGKVCLVGM 200
           K +  +L     GG++  +G 
Sbjct: 199 KEVEESLGLLAHGGRLVYIGA 219

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 68.4 bits (168), Expect = 7e-14
 Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 12/156 (7%)

Query: 49  HGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVG-VHAC--RRANIGPETNVLIMG-S 104
            G  A +V          P  +   E       +   ++    RR  +     VL++G +
Sbjct: 111 IGGYAERVAVAPSNILPTPPQLDDAEAV-ALIANYHTMYFAYARRGQLRAGETVLVLGAA 169

Query: 105 GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKA 164
           G IG   +  A+  GA  I +V+         K +GAD ++ +    +  A+ V +    
Sbjct: 170 GGIGTAAIQIAKGMGAKVIAVVNRTA-ATEFVKSVGADIVLPLE---EGWAKAVREATG- 224

Query: 165 MGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM 200
            G G+D+  D  G       A+    + G++ +VG 
Sbjct: 225 -GAGVDMVVDPIG-GPAFDDAVRTLASEGRLLVVGF 258

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 67.2 bits (165), Expect = 1e-13
 Identities = 53/203 (26%), Positives = 77/203 (37%), Gaps = 36/203 (17%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            VG EV     GDRVA           Y  G                  G  +   V P 
Sbjct: 71  AVGDEVTRFKVGDRVA-----------YGTGP----------------LGAYSEVHVLPE 103

Query: 61  DLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMG-SGPIGLVTMLAARA 117
               KL D+VS E+ A  M + L+V     +   + P   +L    +G +G +    A+A
Sbjct: 104 ANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKA 163

Query: 118 FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG 177
            GA  I  V   + + + AK LGA   +  S   +D+A+ V ++    G    V +D  G
Sbjct: 164 LGAKLIGTVSSPE-KAAHAKALGAWETIDYSH--EDVAKRVLELTD--GKKCPVVYDGVG 218

Query: 178 FNKTMSTALSATRAGGKVCLVGM 200
              T  T+L +    G V   G 
Sbjct: 219 -QDTWLTSLDSVAPRGLVVSFGN 240

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 66.1 bits (162), Expect = 3e-13
 Identities = 51/206 (24%), Positives = 82/206 (39%), Gaps = 40/206 (19%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           +VG  V     G+RV             C                    G  + + ++PA
Sbjct: 74  EVGPGVTDFTVGERVC-----------TCLPP----------------LGAYSQERLYPA 106

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHAC----RRANIGPETNVLIM-GSGPIGLVTMLAA 115
           +   K+P ++ L++  +   +  G+ A     +   + P   VLI   +G +G + +  A
Sbjct: 107 EKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWA 166

Query: 116 RAFGAPRIVIVDV-DDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD 174
           R  GA   VI  V  + +   A+KLG  + +  ST  QD AE V +I    G G+DV +D
Sbjct: 167 RHLGA--TVIGTVSTEEKAETARKLGCHHTINYST--QDFAEVVREITG--GKGVDVVYD 220

Query: 175 CAGFNKTMSTALSATRAGGKVCLVGM 200
             G   T+  +L   R  G     G 
Sbjct: 221 SIG-KDTLQKSLDCLRPRGMCAAYGH 245

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 65.5 bits (160), Expect = 8e-13
 Identities = 41/215 (19%), Positives = 66/215 (30%), Gaps = 45/215 (20%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            VGS+V  +  GDRV                               P  G  +   V   
Sbjct: 76  AVGSDVTHIQVGDRV----------YGAQNEMC----------PRTPDQGAFSQYTVTRG 115

Query: 61  DLCFKLPDNVSLEEGAMCEPLSV---------------GVHACRRANIGPETNVLIMG-S 104
            +  K+P  +S E+ A   P  +                  A +         VL+ G S
Sbjct: 116 RVWAKIPKGLSFEQAA-ALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGS 174

Query: 105 GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKA 164
                VTM   R  G   I I     +   +AK  GA+ +        ++    + I+  
Sbjct: 175 TATATVTMQMLRLSGY--IPIATCSPHNFDLAKSRGAEEV--FDYRAPNL---AQTIRTY 227

Query: 165 MGTGIDVSFDCAGFNKTMSTALSAT-RAGGKVCLV 198
               +  + DC    ++ +   +A  RAGG    +
Sbjct: 228 TKNNLRYALDCITNVESTTFCFAAIGRAGGHYVSL 262

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 64.5 bits (158), Expect = 1e-12
 Identities = 44/216 (20%), Positives = 70/216 (32%), Gaps = 40/216 (18%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            VG  V     GD+V          C    GG Y                  A   + PA
Sbjct: 99  GVGPGVSGYAVGDKV----------CGLANGGAY------------------AEYCLLPA 130

Query: 61  DLCFKLPDNVSLEEGA-MCEPLSVGVHA-CRRANIGPETNVLIM-GSGPIGLVTMLAARA 117
                 P      + A + E          + A +    +VLI  G+  IG   +  ARA
Sbjct: 131 GQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARA 190

Query: 118 FGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG 177
           FGA           +    ++LGA   +   +  +D A  ++      G G+D+  D  G
Sbjct: 191 FGAEVYATAGSTG-KCEACERLGAKRGINYRS--EDFAAVIKAET---GQGVDIILDMIG 244

Query: 178 FNKTMSTALSATRAGGKVCLVGM--GHREMTVPLTP 211
                   +++    G + ++    G     V L+P
Sbjct: 245 -AAYFERNIASLAKDGCLSIIAFLGGAVAEKVNLSP 279

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 45/206 (21%), Positives = 72/206 (34%), Gaps = 40/206 (19%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
             G  V     GD+VA           Y     +                      +   
Sbjct: 77  AKGKGVTNFEVGDQVA-----------YISNSTFA-----------------QYSKISSQ 108

Query: 61  DLCFKLPDNVSLEE-----GAMCEPLSVGVHACRRANIGPETNVLIMG-SGPIGLVTMLA 114
               KLP   S EE       + + L+         ++     VL+   +G +GL+    
Sbjct: 109 GPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQL 168

Query: 115 ARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD 174
            +  GA  I +   D+ +L +AK+ GA+ ++  S   +DI  +V K     G G+D SFD
Sbjct: 169 LKMKGAHTIAVASTDE-KLKIAKEYGAEYLINASK--EDILRQVLKFTN--GKGVDASFD 223

Query: 175 CAGFNKTMSTALSATRAGGKVCLVGM 200
             G   T   +L+A +  G     G 
Sbjct: 224 SVG-KDTFEISLAALKRKGVFVSFGN 248

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 61.8 bits (151), Expect = 1e-11
 Identities = 39/203 (19%), Positives = 66/203 (32%), Gaps = 42/203 (20%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           ++GS+V  +  GD+V                G           G P    C A  V    
Sbjct: 81  ELGSDVNNVNIGDKVM---------------GI---------AGFPDHPCCYAEYVCASP 116

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGV---HACRRANIGPETNVLIMG-SGPIGLVTMLAAR 116
           D   +  + +S  + A   P   G+    A  +A +     VLI   +G +G + +  A+
Sbjct: 117 DTIIQKLEKLSFLQAA-SLPT-AGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK 174

Query: 117 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA 176
             G    VI        +  K LGA+  +      +D    +        T +D   D  
Sbjct: 175 QKGT--TVITTASKRNHAFLKALGAEQCINYHE--EDFLLAI-------STPVDAVIDLV 223

Query: 177 GFNKTMSTALSATRAGGKVCLVG 199
           G       ++   +  G +  V 
Sbjct: 224 G-GDVGIQSIDCLKETGCIVSVP 245

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 48/206 (23%), Positives = 71/206 (34%), Gaps = 40/206 (19%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD 61
           VG EV +   GD V                  + L       G   + G  A      A 
Sbjct: 78  VGPEVDSFRVGDAV------------------FGLTG-----GVGGLQGTHAQFAAVDAR 114

Query: 62  LCFKLPDNVSLEEGAMCEPLSVGVHA----CRRANIGPETNVLIM-GSGPIGLVTMLAAR 116
           L    P  +++ + +   PL V + A      RA +     VLI  G G +G V +  A 
Sbjct: 115 LLASKPAALTMRQAS-VLPL-VFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIAL 172

Query: 117 AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA 176
           A GA   V        L   + LGA  I       ++  +   +     G G D+ +D  
Sbjct: 173 ARGA--RVFATARGSDLEYVRDLGATPID----ASREPEDYAAEH--TAGQGFDLVYDTL 224

Query: 177 GFNKTMSTALSATRAGGK-VCLVGMG 201
           G    +  + SA +  G  V  +G G
Sbjct: 225 G-GPVLDASFSAVKRFGHVVSCLGWG 249

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 40/221 (18%), Positives = 72/221 (32%), Gaps = 51/221 (23%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           KVG++V + + G RVA                            S   HG  A   V   
Sbjct: 72  KVGAKVDSKMLGRRVA-------------------------YHTSLKRHGSFAEFTVLNT 106

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGV---HACRRANIGPETNVLIMGSGPIGLVTMLA--A 115
           D    LPDN+S E  A   P    +    A  +  +  +  VLI+G G +    +L    
Sbjct: 107 DRVMTLPDNLSFERAA-ALPC-PLLTAWQAFEKIPLTKQREVLIVGFGAVN--NLLTQML 162

Query: 116 RAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC 175
              G   +V +       ++A K G  ++       ++ ++  +             FD 
Sbjct: 163 NNAGY--VVDLVSASLSQALAAKRGVRHLY------REPSQVTQ--------KYFAIFDA 206

Query: 176 AGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAASF 216
              ++  +  + + +A G +  +         P      S+
Sbjct: 207 VN-SQNAAALVPSLKANGHIICIQDRIPAPIDPAFTRTISY 246

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 11/155 (7%)

Query: 50  GCLANQVVHPADLCFKLPDNVSLEEGA-MCEPLSVGVHAC--RRANIGPETNVLIM-GSG 105
           G  A  V  P  L   +P+ ++L + A + E              N+     VLI  G  
Sbjct: 115 GGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLT-AFQLLHLVGNVQAGDYVLIHAGLS 173

Query: 106 PIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAM 165
            +G   +   R  GA  +V       +L +A+KLGA          +D +E   K  K  
Sbjct: 174 GVGTAAIQLTRMAGAIPLVTAGSQK-KLQMAEKLGAAAGFNYKK--EDFSEATLKFTK-- 228

Query: 166 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM 200
           G G+++  DC G        ++     G+  L G+
Sbjct: 229 GAGVNLILDCIG-GSYWEKNVNCLALDGRWVLYGL 262

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 38/208 (18%), Positives = 65/208 (31%), Gaps = 46/208 (22%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           + G +VK   PGD V            +                 P   G L+  VV   
Sbjct: 108 ECGLDVKYFKPGDEV------------W-------------AAVPPWKQGTLSEFVVVSG 142

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGV--------HACRRANIGPETNVLIMG-SGPIGLVT 111
           +     P +++  + A   P  V +                     VLI+G SG +G   
Sbjct: 143 NEVSHKPKSLTHTQAA-SLPY-VALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFA 200

Query: 112 MLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDV 171
           +   +A+ A   V          + +KLGAD+++   +    + E+++          D 
Sbjct: 201 IQVMKAWDA--HVTAVCSQDASELVRKLGADDVIDYKS--GSVEEQLKS-----LKPFDF 251

Query: 172 SFDCAGFNKTMSTALSATRAGGKVCLVG 199
             D  G   T + A    +       V 
Sbjct: 252 ILDNVG-GSTETWAPDFLKKWSGATYVT 278

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 16/157 (10%)

Query: 49  HGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL---SVGVHACRRANIGP-ETNVLIMG- 103
            G  A   V PA +   +P     E   +        + +       +   +  VL+   
Sbjct: 117 PGSFAEYTVVPASIATPVPSVKP-EYLTLLVSGTTAYISLK--ELGGLSEGKK-VLVTAA 172

Query: 104 SGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQK 163
           +G  G   M  ++      I     D+ + +  K LG D  +   T  + +   +++   
Sbjct: 173 AGGTGQFAMQLSKKAKCHVIGTCSSDE-KSAFLKSLGCDRPINYKT--EPVGTVLKQ--- 226

Query: 164 AMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM 200
               G+DV ++  G       A+ A    G++ ++G 
Sbjct: 227 EYPEGVDVVYESVG-GAMFDLAVDALATKGRLIVIGF 262

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 49/230 (21%), Positives = 81/230 (35%), Gaps = 50/230 (21%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            VG+EV     GD V            Y               GSP  +G  A   +   
Sbjct: 73  SVGNEVTMFNQGDIV------------Y-------------YSGSPDQNGSNAEYQLINE 107

Query: 61  DLCFKLPDNVSLEE-GAMCEPLSVGVHA----CRRANIGPETN------VLIM-GSGPIG 108
            L  K P N+S E+  ++  PL  G+ A         I    N      +LI+ G+G +G
Sbjct: 108 RLVAKAPKNISAEQAVSL--PL-TGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVG 164

Query: 109 LVTMLAARAFGAPRIVIVDV-DDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGT 167
            +    A+A+G    VI     +  +   KK+GAD ++    +L      + + +     
Sbjct: 165 SIATQIAKAYGL--RVITTASRNETIEWTKKMGADIVLNHKESL------LNQFKTQGIE 216

Query: 168 GIDVSFDCAGFNKTMSTALSATRAGGKVCL-VGMGHREMTVPLTPAAASF 216
            +D  F     +      +   +  G +   V   + +    L P + SF
Sbjct: 217 LVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAFENDQDLNALKPKSLSF 266

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 Length = 328

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 22/162 (13%)

Query: 49  HGCLANQVVHPADLCFKLPDNVSLEE----GAMCEPLSVGVHACRRANIGPETNVLIM-- 102
            G  +       +    LP  ++L+E    G      ++ +H      + PE   +++  
Sbjct: 98  FGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTG 157

Query: 103 GSGPIGLVTMLAARAFGAPRIVIV---DVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE 159
            +G +G + +      G             DY     + LGA  ++          + + 
Sbjct: 158 ATGGVGSLAVSMLAKRGYTVEASTGKAAEHDY----LRVLGAKEVL-------AREDVMA 206

Query: 160 KIQKAMGTGI-DVSFDCAGFNKTMSTALSATRAGGKVCLVGM 200
           +  + +       + D  G  +T++T LS  R GG V + G+
Sbjct: 207 ERIRPLDKQRWAAAVDPVG-GRTLATVLSRMRYGGAVAVSGL 247

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 40/227 (17%), Positives = 68/227 (29%), Gaps = 45/227 (19%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            VG +V    PGD V            +               GS    G  A   +   
Sbjct: 95  AVGPDVTLFRPGDEV------------F-------------YAGSIIRPGTNAEFHLVDE 129

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHA----CRRANIGPETN-----VLIM-GSGPIGLV 110
            +  + P  +   E A   PL   + A      R ++          +LI+ G+G +G +
Sbjct: 130 RIVGRKPKTLDWAEAA-ALPL-TSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSI 187

Query: 111 TMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGID 170
            +  AR      ++            K LGA +++  S   + +A EV  +         
Sbjct: 188 AVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHS---KPLAAEVAALG---LGAPA 241

Query: 171 VSFDCAGFNKTMSTALSATRAGGKVCL-VGMGHREMTVPLTPAAASF 216
             F     +K  +         G+ CL       ++       A S 
Sbjct: 242 FVFSTTHTDKHAAEIADLIAPQGRFCLIDDPSAFDIM-LFKRKAVSI 287

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* Length = 330

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 16/159 (10%)

Query: 49  HGCLANQVVHPADLCFKLPDNVSLEE----GAMCEPLSVGVHACRRANIGPETNVLIM-- 102
            G L+     P D    LP N+SL+E    G      ++ VH   +  + PE   +++  
Sbjct: 99  DGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTG 158

Query: 103 GSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQ 162
            +G +G + +      G   +     +       K+LGA  ++          +  +   
Sbjct: 159 ATGGVGGIAVSMLNKRGYDVVAST-GNREAADYLKQLGASEVI-------SREDVYDGTL 210

Query: 163 KAMGTGI-DVSFDCAGFNKTMSTALSATRAGGKVCLVGM 200
           KA+       + D  G  K +++ LS  + GG V + G+
Sbjct: 211 KALSKQQWQGAVDPVG-GKQLASLLSKIQYGGSVAVSGL 248

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 25/128 (19%), Positives = 40/128 (31%), Gaps = 42/128 (32%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
           + G  V  L PGDRV                          G+             V   
Sbjct: 278 ETGPGVTGLAPGDRVM-------------------------GMIP----KAFGPLAVADH 308

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGV------HA-CRRANIGPETNVLI-MGSGPIGLVTM 112
            +  ++P   S    A     SV +      +A    A + P  ++L+   +G +G+  +
Sbjct: 309 RMVTRIPAGWSFARAA-----SVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAI 363

Query: 113 LAARAFGA 120
             AR  GA
Sbjct: 364 QLARHLGA 371

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 44.8 bits (105), Expect = 8e-06
 Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 91  ANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL----GADNI 144
                    + +G GP+ L  +L +  +G  R+ +V+++     +++K+    G D +
Sbjct: 118 GRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGLGVDGV 174

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 33/202 (16%), Positives = 60/202 (29%), Gaps = 64/202 (31%)

Query: 34  YNLCPESKGLGSPPVHG-------CLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVH 86
             L P  K +    + G        +A  V     +  K+   +          L++   
Sbjct: 145 LELRPA-KNVL---IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW--------LNLK-- 190

Query: 87  ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA--PRIVIVDVDDY--RLSVAKKLGAD 142
            C      PET + ++      +     +R+  +   ++ I  +     RL  +K     
Sbjct: 191 NCNS----PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 143 NIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD--CAGFNKTMSTALSATR--------AG 192
            +V     L ++     K   A        F+  C    K + T    TR        + 
Sbjct: 247 LLV-----LLNVQN--AKAWNA--------FNLSC----KILLT----TRFKQVTDFLSA 283

Query: 193 GKVCLVGMGHREMTVPLTPAAA 214
                + + H  MT  LTP   
Sbjct: 284 ATTTHISLDHHSMT--LTPDEV 303

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* Length = 324

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 18/159 (11%)

Query: 49  HGCLANQVVHPADLCFKLPDNVSLEE----GAMCEPLSVGVHACRRANIGPETNVLIM-- 102
            G LA +     D    LP  +S       G       + V A   A I P+   +++  
Sbjct: 95  WGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTG 154

Query: 103 GSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQ 162
            SG +G   +      G     +   +       K LGA+ I+    +  + AE      
Sbjct: 155 ASGGVGSTAVALLHKLGYQVAAVSGRESTH-GYLKSLGANRIL----SRDEFAES----- 204

Query: 163 KAMGTGI-DVSFDCAGFNKTMSTALSATRAGGKVCLVGM 200
           + +   +   + D  G +K ++  L+    GG V   G+
Sbjct: 205 RPLEKQLWAGAIDTVG-DKVLAKVLAQMNYGGCVAACGL 242

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	99.96
4eye_A	342	Probable oxidoreductase; structural genomics, niai	99.96
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	99.96
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	99.96
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	99.96
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	99.96
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	99.96
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	99.96
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	99.96
3gms_A	340	Putative NADPH:quinone reductase; structural genom	99.96
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	99.96
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	99.96
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	99.96
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	99.95
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	99.95
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	99.95
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	99.95
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	99.95
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	99.95
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	99.95
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	99.95
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	99.94
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	99.94
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	99.94
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	99.94
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.93
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.93
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	99.93
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	99.93
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.93
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	99.91
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.84
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.82
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.47
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.12
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.94
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.84
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.82
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.8
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.7
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.66
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.61
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.53
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.49
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	98.47
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.47
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.46
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.46
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.38
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.35
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.34
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	98.34
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	98.3
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.3
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	98.26
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.23
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	98.23
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	98.21
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.19
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.17
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	98.16
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	98.16
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	98.15
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	98.14
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.14
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	98.13
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.13
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	98.11
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.11
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	98.1
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	98.09
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	98.09
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	98.08
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	98.07
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	98.05
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	98.05
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	98.04
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	98.04
3imf_A	257	Short chain dehydrogenase; structural genomics, in	98.03
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	98.02
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	98.02
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	98.02
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	98.01
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	98.0
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.0
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.99
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.98
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.98
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.98
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.98
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.98
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.98
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.98
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.98
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.97
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.96
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.96
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.96
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.96
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.96
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.95
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.94
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.94
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	97.94
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.94
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.94
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.93
1spx_A	278	Short-chain reductase family member (5L265); paral	97.92
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.92
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.92
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.91
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	97.91
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.91
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.9
1xhl_A	297	Short-chain dehydrogenase/reductase family member	97.9
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.9
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.9
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.9
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.89
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.89
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.89
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.89
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.88
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.88
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.88
1xq1_A	266	Putative tropinone reducatse; structural genomics,	97.88
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.88
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.88
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.87
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.87
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.87
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.87
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.85
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.85
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.85
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.85
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.85
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.85
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.84
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	97.84
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.84
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.83
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.83
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.83
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	97.83
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.83
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	97.83
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.82
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.82
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.82
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	97.82
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.82
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	97.82
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.82
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.82
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.82
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.82
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.81
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	97.81
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.81
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.81
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.8
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.8
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.79
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	97.79
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	97.79
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.79
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.79
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	97.79
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	97.79
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.79
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.78
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.78
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.77
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.77
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.77
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.77
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	97.76
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.76
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.75
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.75
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.75
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	97.75
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.74
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.74
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	97.74
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	97.73
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	97.73
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.72
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.72
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.72
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.72
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.71
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.71
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	97.7
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.7
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	97.7
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.7
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.7
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.69
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.69
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	97.69
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	97.68
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.68
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	97.68
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.67
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.67
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	97.67
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	97.66
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.66
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.65
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.65
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	97.65
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	97.65
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	97.65
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	97.64
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	97.64
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	97.64
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.64
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.63
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.62
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	97.62
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	97.62
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	97.61
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	97.61
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	97.61
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	97.61
1xkq_A	280	Short-chain reductase family member (5D234); parra	97.6
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	97.6
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	97.6
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.59
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.59
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.59
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.59
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	97.59
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	97.58
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.58
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	97.58
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.58
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.58
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	97.57
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.57
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	97.57
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.57
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.57
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	97.57
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.56
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.56
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.55
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.55
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.54
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.54
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	97.53
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.53
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.52
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	97.52
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.52
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.51
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.51
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	97.51
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	97.51
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	97.51
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.5
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	97.5
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.5
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	97.5
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	97.49
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.49
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.49
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	97.49
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.49
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	97.48
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	97.48
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	97.47
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	97.46
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.45
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.44
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.43
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.43
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	97.43
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.41
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.41
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	97.41
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	97.41
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	97.4
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.4
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.4
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.4
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	97.4
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.4
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	97.4
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.39
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.39
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	97.39
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.39
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	97.38
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.38
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.38
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	97.36
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.36
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.36
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	97.36
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.35
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.34
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	97.34
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.33
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	97.32
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.32
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.32
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	97.31
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	97.31
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.31
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.31
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	97.31
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	97.31
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.31
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	97.3
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.3
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.3
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.3
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	97.29
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	97.29
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	97.28
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	97.28
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	97.28
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.27
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	97.27
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	97.27
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	97.26
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	97.26
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.25
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.25
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	97.24
2o07_A	304	Spermidine synthase; structural genomics, structur	97.24
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.24
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.22
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	97.22
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.22
2i7c_A	283	Spermidine synthase; transferase, structural genom	97.22
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	97.21
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	97.21
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	97.21
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.21
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	97.21
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	97.2
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.2
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	97.2
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.2
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.2
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.2
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.19
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	97.18
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.17
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	97.17
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	97.17
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	97.17
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.17
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	97.17
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.16
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.15
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.15
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	97.15
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	97.15
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	97.14
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.13
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	97.13
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.13
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	97.12
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.12
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.12
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	97.12
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	97.12
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.12
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	97.12
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	97.12
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	97.12
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	97.11
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.11
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.11
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	97.11
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	97.11
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	97.11
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	97.09
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	97.09
2pt6_A	321	Spermidine synthase; transferase, structural genom	97.08
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	97.08
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.08
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	97.08
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	97.08
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	97.07
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	97.07
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	97.07
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	97.06
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.04
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	97.04
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	97.04
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	97.04
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.04
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	97.04
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.04
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.03
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	97.02
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.02
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	97.02
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	97.02
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	97.01
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	96.99
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.99
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	96.99
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.98
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	96.98
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	96.98
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	96.97
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	96.97
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	96.97
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	96.97
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	96.97
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	96.96
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.95
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.95
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	96.95
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	96.95
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	96.94
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.93
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.92
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	96.92
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	96.91
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	96.91
4e4y_A	244	Short chain dehydrogenase family protein; structur	96.91
2esr_A	177	Methyltransferase; structural genomics, hypothetic	96.91
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.9
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	96.9
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	96.9
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	96.89
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	96.88
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	96.88
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.87
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	96.87
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	96.87
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	96.87
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	96.85
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	96.85
3i9f_A	170	Putative type 11 methyltransferase; structural gen	96.85
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.84
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.84
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	96.83
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	96.83
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	96.83
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	96.83
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	96.83
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.82
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.81
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	96.8
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.79
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.78
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	96.78
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.77
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.77
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.77
1xxl_A	239	YCGJ protein; structural genomics, protein structu	96.77
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.76
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	96.76

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=2.5e-39  Score=267.23  Aligned_cols=211  Identities=39%  Similarity=0.677  Sum_probs=184.3

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEP   80 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~   80 (216)
                      ++|++|++|++||||++.+..+|++|++|+.|+++.|.+....+....+|+|+||+.+|++.++++|+ +++++|+++.+
T Consensus        86 ~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~-~s~~~aa~~~~  164 (363)
T 3m6i_A           86 AVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKIGN-MSYENGAMLEP  164 (363)
T ss_dssp             EECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTSTTSCCSCBSEEEEEGGGEEECTT-CCHHHHHHHHH
T ss_pred             EECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccccCCCCCCccceeEEEEehhhEEECCC-CCHHHHHhhhH
Confidence            47899999999999999999999999999999999999988877755789999999999999999999 99999998888


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCC---CcccHHHH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVST---NLQDIAEE  157 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~  157 (216)
                      ++|+|++++..+++++++|||+|+|++|++++|+|+.+|+++|++++++++++++++++ ++.++++..   ..+++.+.
T Consensus       165 ~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~  243 (363)
T 3m6i_A          165 LSVALAGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPEVVTHKVERLSAEESAKK  243 (363)
T ss_dssp             HHHHHHHHHHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTTCEEEECCSCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chhcccccccccchHHHHHH
Confidence            99999999889999999999999999999999999999997699999999999999999 655554322   23455555


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhhc
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAS  215 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~  215 (216)
                      ++++  +.++++|++||++|++..++.++++|+++|+++.+|+.....++++..+++|
T Consensus       244 v~~~--t~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~  299 (363)
T 3m6i_A          244 IVES--FGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRASVR  299 (363)
T ss_dssp             HHHH--TSSCCCSEEEECSCCHHHHHHHHHHSCTTCEEEECCCCCSCCCCCHHHHHHH
T ss_pred             HHHH--hCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEccCCCCccccHHHHHhc
Confidence            6554  3577999999999997688999999999999999998776666776665543

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=1.3e-38  Score=262.41  Aligned_cols=211  Identities=48%  Similarity=0.806  Sum_probs=183.3

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEP   80 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~   80 (216)
                      ++|++|++|++||||++.+..+|++|++|+.|++++|++...+|....+|+|+||+.+|++.++++|+++++++|+++.+
T Consensus        77 ~vG~~V~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~~~~  156 (356)
T 1pl8_A           77 KVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEP  156 (356)
T ss_dssp             EECTTCCSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHHHHH
T ss_pred             EECCCCCCCCCCCEEEEeccCCCCCChHHHCcCcccCCCccccCcCCCCCccccEEEeehHHEEECcCCCCHHHHHhhch
Confidence            47899999999999999999999999999999999999887766544579999999999999999999999999998888


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCC-CcccHHHHHH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVE  159 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~  159 (216)
                      ++++|++++..+++++++|||+|+|++|++++|+|+.+|+++|++++++++++++++++|++.+++++. +..++.+.+.
T Consensus       157 ~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~  236 (356)
T 1pl8_A          157 LSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVE  236 (356)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHH
Confidence            999999998889999999999999999999999999999966999999999999999999998887642 1234545555


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhh
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA  214 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  214 (216)
                      +.+   ++++|++||++|....++.++++|+++|+++.+|......++++..+++
T Consensus       237 ~~~---~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~  288 (356)
T 1pl8_A          237 GQL---GCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAI  288 (356)
T ss_dssp             HHH---TSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHHHHH
T ss_pred             HHh---CCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEecCCCCCccCHHHHHh
Confidence            442   3689999999999777899999999999999999865556666655544

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.3e-38  Score=259.54  Aligned_cols=210  Identities=50%  Similarity=0.849  Sum_probs=183.0

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEP   80 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~   80 (216)
                      ++|++|++|++||||++.+..+|++|++|+.|++++|++..+.|....+|+|+||+.+|++.++++|+++++++|+++.+
T Consensus        74 ~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~  153 (352)
T 1e3j_A           74 KVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEP  153 (352)
T ss_dssp             EECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHTHHH
T ss_pred             EeCCCCCCCCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcccCcCCCCccceeEEEeChHHeEECcCCCCHHHHHhhch
Confidence            47899999999999999999999999999999999999887766544579999999999999999999999999998888


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  160 (216)
                      ++++|++++..+++++++|||+|+|++|++++|+|+.+|++ |++++++++++++++++|++.++++++ ..++.+.+.+
T Consensus       154 ~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~-Vi~~~~~~~~~~~~~~lGa~~~~~~~~-~~~~~~~i~~  231 (352)
T 1e3j_A          154 LSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKNCGADVTLVVDP-AKEEESSIIE  231 (352)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTTCSEEEECCT-TTSCHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHhCCCEEEcCcc-cccHHHHHHH
Confidence            99999999888999999999999999999999999999996 999999999999999999998887642 1345555555


Q ss_pred             HHHHc---CCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhh
Q 048013          161 IQKAM---GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA  214 (216)
Q Consensus       161 ~~~~~---~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  214 (216)
                      ..  .   +.++|++||++|....++.++++|+++|+++.+|......++++..+++
T Consensus       232 ~~--~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~  286 (352)
T 1e3j_A          232 RI--RSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACA  286 (352)
T ss_dssp             HH--HHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCHHHHHT
T ss_pred             Hh--ccccCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCccccHHHHHh
Confidence            42  3   5689999999999767899999999999999999765555666655544

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=1e-38  Score=264.17  Aligned_cols=212  Identities=30%  Similarity=0.558  Sum_probs=185.8

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEP   80 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~   80 (216)
                      ++|++|++|++||||+..+..+|++|++|+.|++++|.+...+|. ..+|+|+||+.+|++.++++|+++++++|++..+
T Consensus        89 ~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~-~~~G~~aey~~v~~~~~~~~P~~~~~~~aal~~~  167 (370)
T 4ej6_A           89 EAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGI-HRDGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEP  167 (370)
T ss_dssp             EECTTCCSSCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEEBTT-TBCCSSBSEEEEEGGGEEEECTTSCTTGGGGHHH
T ss_pred             EECCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCccccCC-CCCCcceEEEEEchhhEEECCCCCCHHHHhhhhH
Confidence            478999999999999999999999999999999999999888877 4689999999999999999999999999997779


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  160 (216)
                      +.++|++++..+++++++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|++.++++..  .++.+.+.+
T Consensus       168 ~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~--~~~~~~i~~  245 (370)
T 4ej6_A          168 LACCLHGVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSA--GDVVEAIAG  245 (370)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTS--SCHHHHHHS
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCC--cCHHHHHHh
Confidence            999999998899999999999999999999999999999977999999999999999999999888643  566665554


Q ss_pred             HHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC--CCcccchhhhhc
Q 048013          161 IQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR--EMTVPLTPAAAS  215 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~  215 (216)
                      .....++++|++||++|....++.++++|+++|+++.+|....  ..++++..++.|
T Consensus       246 ~~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~~~~~~~~~~~~~~~~~~  302 (370)
T 4ej6_A          246 PVGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFR  302 (370)
T ss_dssp             TTSSSTTCEEEEEECSCCHHHHHHHHHHEEEEEEEEECSCCCTTCCCCCCHHHHHHT
T ss_pred             hhhccCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEeccCCCCccccCHHHHHhC
Confidence            1112334899999999987888999999999999999997665  456666666543

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=4.6e-38  Score=258.36  Aligned_cols=207  Identities=31%  Similarity=0.567  Sum_probs=170.4

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEP   80 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~   80 (216)
                      ++|++|++|++||||+..+..+|++|++|+.|++++|++...+|. ..+|+|+||+.+|++.++++|+++++++|+++++
T Consensus        75 ~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~  153 (348)
T 2d8a_A           75 EIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGV-DTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEP  153 (348)
T ss_dssp             EECTTCCSCCTTCEEEECCEECCSCCC------------CEETTT-SSCCSSBSEEEEEGGGEEECCTTSCHHHHTTHHH
T ss_pred             EECCCCCcCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCeecC-CCCCcCcceEEeChHHeEECCCCCCHHHHHhhhH
Confidence            478999999999999999999999999999999999998877665 4679999999999999999999999999998889


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  160 (216)
                      ++++|++++..++ ++++|||+|+|++|++++|+|+.+|+.+|+++++++++++.++++|++.+++++  ++++.+.+.+
T Consensus       154 ~~ta~~~l~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~--~~~~~~~v~~  230 (348)
T 2d8a_A          154 LGNAVDTVLAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPF--EEDVVKEVMD  230 (348)
T ss_dssp             HHHHHHHHTTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTT--TSCHHHHHHH
T ss_pred             HHHHHHHHHhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCC--CcCHHHHHHH
Confidence            9999999987888 999999999999999999999999994499999999999999999999888754  3566666665


Q ss_pred             HHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccc-hhhh
Q 048013          161 IQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPL-TPAA  213 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~  213 (216)
                      +  +.+.++|++||++|....++.++++++++|+++.+|......++++ ..++
T Consensus       231 ~--~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~  282 (348)
T 2d8a_A          231 I--TDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLII  282 (348)
T ss_dssp             H--TTTSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSSCCCCCHHHHTT
T ss_pred             H--cCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCCCcccCchHHHH
Confidence            5  3456899999999987888999999999999999998666556665 4443

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=1.1e-36  Score=252.63  Aligned_cols=210  Identities=26%  Similarity=0.442  Sum_probs=177.5

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCC----C---CCCC-----------------CCCCccceeE
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESK----G---LGSP-----------------PVHGCLANQV   56 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~----~---~~~~-----------------~~~g~~~~~~   56 (216)
                      ++|++|++|++||||++.+..+|++|++|+.|++++|.+..    .   .|..                 ...|+|+||+
T Consensus        75 ~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~  154 (376)
T 1e3i_A           75 SVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYT  154 (376)
T ss_dssp             EECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEE
T ss_pred             EECCCCccCCCCCEEEECCcCCCCCCccccCCCcccCcCcCccccccccccccccCccccccCCcccccccCCccceeEE
Confidence            47899999999999999999999999999999999998754    1   1110                 1249999999


Q ss_pred             EecCCceEECCCCCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHH
Q 048013           57 VHPADLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLS  134 (216)
Q Consensus        57 ~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~  134 (216)
                      .+|++.++++|+++++++|+.++ ++.|+|+++ +..+++++++|||+|+|++|++++|+|+.+|+++|+++++++++++
T Consensus       155 ~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~  234 (376)
T 1e3i_A          155 VVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFP  234 (376)
T ss_dssp             EEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred             EeccccEEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            99999999999999999999776 788999988 5688999999999999999999999999999966999999999999


Q ss_pred             HHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcC-CEEEEeccCCCCCcccchhhh
Q 048013          135 VAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHREMTVPLTPAA  213 (216)
Q Consensus       135 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~  213 (216)
                      +++++|++.++++.+.++++.+.+++++  .+ ++|++||++|....++.++++++++ |+++.+|......+++...++
T Consensus       235 ~a~~lGa~~vi~~~~~~~~~~~~v~~~~--~~-g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~  311 (376)
T 1e3i_A          235 KAKALGATDCLNPRELDKPVQDVITELT--AG-GVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVI  311 (376)
T ss_dssp             HHHHTTCSEEECGGGCSSCHHHHHHHHH--TS-CBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSEEEEEHHHHH
T ss_pred             HHHHhCCcEEEccccccchHHHHHHHHh--CC-CccEEEECCCCHHHHHHHHHHhhcCCCEEEEECCCCCccccCHHHhh
Confidence            9999999998876432246766676653  34 8999999999877889999999999 999999985444455544443

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=3e-37  Score=256.13  Aligned_cols=201  Identities=28%  Similarity=0.494  Sum_probs=174.9

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCC---CCC------------------CCCCCccceeEEec
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKG---LGS------------------PPVHGCLANQVVHP   59 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~------------------~~~~g~~~~~~~~~   59 (216)
                      ++|++|++|++||||+..+..+|++|++|+.|++++|++...   .|.                  ....|+|+||+.+|
T Consensus        76 ~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~  155 (378)
T 3uko_A           76 SVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVH  155 (378)
T ss_dssp             EECTTCCSCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSEEEEE
T ss_pred             EeCCCCCcCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeEEEec
Confidence            478999999999999999999999999999999999987532   111                  01237999999999


Q ss_pred             CCceEECCCCCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH
Q 048013           60 ADLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK  137 (216)
Q Consensus        60 ~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~  137 (216)
                      ++.++++|+++++++|++++ ++.|||+++ +..+++++++|||+|+|++|++++|+|+.+|+++|++++++++++++++
T Consensus       156 ~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~  235 (378)
T 3uko_A          156 DVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK  235 (378)
T ss_dssp             GGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH
T ss_pred             hhheEECCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence            99999999999999999876 788999988 6688999999999999999999999999999966999999999999999


Q ss_pred             HcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcC-CEEEEeccCCCC
Q 048013          138 KLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHRE  204 (216)
Q Consensus       138 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~  204 (216)
                      ++|++.++++.+.+.++.+.+++++  .+ ++|++||++|.+..++.++++++++ |+++.+|.....
T Consensus       236 ~lGa~~vi~~~~~~~~~~~~i~~~~--~g-g~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~  300 (378)
T 3uko_A          236 KFGVNEFVNPKDHDKPIQEVIVDLT--DG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG  300 (378)
T ss_dssp             TTTCCEEECGGGCSSCHHHHHHHHT--TS-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTT
T ss_pred             HcCCcEEEccccCchhHHHHHHHhc--CC-CCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCC
Confidence            9999999887543467777777652  34 9999999999988889999999996 999999976543

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=1.8e-37  Score=254.37  Aligned_cols=206  Identities=32%  Similarity=0.578  Sum_probs=180.9

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEP   80 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~   80 (216)
                      ++|++|++|++||||+..+..+|++|++|+.|++++|.+...+|. ..+|+|+||+.+|++.++++|+++++++|+++++
T Consensus        71 ~vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~  149 (343)
T 2dq4_A           71 AVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGV-DRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEP  149 (343)
T ss_dssp             EECTTCCSSCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEEBTT-TBCCSSBSEEEEEGGGEEEECTTSCHHHHTTHHH
T ss_pred             EECCCCCcCCCCCEEEECCCCCCCCChhhhCcCcccCCCcceecC-CCCCcceeEEEEchHHeEECCCCCCHHHHHhhhH
Confidence            478999999999999999999999999999999999998877665 4679999999999999999999999999998888


Q ss_pred             hHHHHHHHH-HcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHH
Q 048013           81 LSVGVHACR-RANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE  159 (216)
Q Consensus        81 ~~~a~~~l~-~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (216)
                      ++++|++++ ..++ ++++|||+|+|++|++++|+|+.+|+.+|+++++++++++.++++ ++.++++.+  +++.+.++
T Consensus       150 ~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~--~~~~~~~~  225 (343)
T 2dq4_A          150 FGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLE--EDLLEVVR  225 (343)
T ss_dssp             HHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTT--SCHHHHHH
T ss_pred             HHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCc--cCHHHHHH
Confidence            999999997 7888 999999999999999999999999994499999999999999989 888887643  56766666


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccc-hhhhh
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPL-TPAAA  214 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~~  214 (216)
                      ++  + +.++|++||++|....++.++++|+++|+++.+|......++++ ..++.
T Consensus       226 ~~--~-~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~  278 (343)
T 2dq4_A          226 RV--T-GSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELVM  278 (343)
T ss_dssp             HH--H-SSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSSCEEECHHHHTGG
T ss_pred             Hh--c-CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCceeCcHHHHHh
Confidence            65  3 67899999999997788999999999999999998665556665 44443

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=2.3e-36  Score=250.34  Aligned_cols=208  Identities=24%  Similarity=0.378  Sum_probs=175.4

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCC---CCC-----------------CCCCccceeEEecC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGL---GSP-----------------PVHGCLANQVVHPA   60 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~---~~~-----------------~~~g~~~~~~~~~~   60 (216)
                      ++|++|++|++||||++.+..+|++|++|+.|++++|.+....   |..                 ...|+|+||+.+|+
T Consensus        76 ~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~  155 (373)
T 1p0f_A           76 SIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVAD  155 (373)
T ss_dssp             EECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEET
T ss_pred             EECCCCCccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccccCCccccccCCcccccccCCccceeEEEEch
Confidence            4789999999999999999999999999999999999875431   110                 12599999999999


Q ss_pred             CceEECCCCCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH
Q 048013           61 DLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK  138 (216)
Q Consensus        61 ~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~  138 (216)
                      +.++++|++++++ |+.++ ++.|+|+++ +..+++++++|||+|+|++|++++|+|+.+|+++|+++++++++++++++
T Consensus       156 ~~~~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  234 (373)
T 1p0f_A          156 IAVAKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE  234 (373)
T ss_dssp             TSEEEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             hhEEECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            9999999999999 88775 788999988 56889999999999999999999999999999669999999999999999


Q ss_pred             cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcC-CEEEEeccCCC--CCcccchhh
Q 048013          139 LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHR--EMTVPLTPA  212 (216)
Q Consensus       139 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~  212 (216)
                      +|++.++++.+.++++.+.+++++  .+ ++|++||++|....++.++++++++ |+++.+|....  ..+++...+
T Consensus       235 lGa~~vi~~~~~~~~~~~~i~~~t--~g-g~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~  308 (373)
T 1p0f_A          235 LGATECLNPKDYDKPIYEVICEKT--NG-GVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLL  308 (373)
T ss_dssp             TTCSEEECGGGCSSCHHHHHHHHT--TS-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHH
T ss_pred             cCCcEEEecccccchHHHHHHHHh--CC-CCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCCCCCccccCHHHh
Confidence            999998876432245666666652  34 8999999999877889999999999 99999997653  234444433

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=6.5e-37  Score=250.72  Aligned_cols=206  Identities=30%  Similarity=0.418  Sum_probs=181.3

Q ss_pred             CCCCCCCCCCCCCEEE-EcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch
Q 048013            1 KVGSEVKTLVPGDRVA-LEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~-~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~   79 (216)
                      ++|++|++|++||||+ ..+..+|++|++|+.|++++|.+....|. ..+|+|+||+.+|++.++++|+++++++|+.+.
T Consensus        71 ~vG~~v~~~~vGdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~  149 (340)
T 3s2e_A           71 AVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGY-SVNGGYGEYVVADPNYVGLLPDKVGFVEIAPIL  149 (340)
T ss_dssp             EECSSCCSCCTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTT-TBCCSSBSEEEECTTTSEECCTTSCHHHHGGGG
T ss_pred             EECCCCCcCCCCCEEEecCCCCCCCCChHHhCcCcccCccccccCC-CCCCcceeEEEechHHEEECCCCCCHHHhhccc
Confidence            4789999999999994 56788999999999999999999887776 577999999999999999999999999999654


Q ss_pred             -hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           80 -PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        80 -~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                       ++.|+|++++..+++++++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|++.++++.+  +++.+.+
T Consensus       150 ~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~i~~~~--~~~~~~~  226 (340)
T 3s2e_A          150 CAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAVNARD--TDPAAWL  226 (340)
T ss_dssp             THHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEETTT--SCHHHHH
T ss_pred             chhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCEEEeCCC--cCHHHHH
Confidence             77899999988899999999999999999999999999999 5999999999999999999999988643  5666655


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhh
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA  214 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  214 (216)
                      ++   +.+ ++|++||+++....++.++++|+++|+++.+|+.....+++...++.
T Consensus       227 ~~---~~g-~~d~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~  278 (340)
T 3s2e_A          227 QK---EIG-GAHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVL  278 (340)
T ss_dssp             HH---HHS-SEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCSSEEEEEHHHHHH
T ss_pred             HH---hCC-CCCEEEEeCCCHHHHHHHHHHhccCCEEEEeCCCCCCCCCCHHHHHh
Confidence            55   244 89999999998888999999999999999999877666666655544

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=4.9e-36  Score=248.50  Aligned_cols=210  Identities=25%  Similarity=0.380  Sum_probs=176.9

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCC---CCC-----------------CCCCccceeEEecC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGL---GSP-----------------PVHGCLANQVVHPA   60 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~---~~~-----------------~~~g~~~~~~~~~~   60 (216)
                      ++|++|++|++||||++.+..+|++|++|+.|++++|.+....   |..                 ...|+|+||+.+|+
T Consensus        75 ~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~  154 (374)
T 2jhf_A           75 SIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDE  154 (374)
T ss_dssp             EECTTCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEG
T ss_pred             EECCCCCCCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccccCCcccccccccccccccCCccCeeEEEEch
Confidence            4789999999999999999999999999999999999876431   110                 12499999999999


Q ss_pred             CceEECCCCCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH
Q 048013           61 DLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK  138 (216)
Q Consensus        61 ~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~  138 (216)
                      +.++++|+++++++|+.++ ++.|||+++ +..+++++++|||+|+|++|++++|+|+.+|+++|+++++++++++++++
T Consensus       155 ~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  234 (374)
T 2jhf_A          155 ISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE  234 (374)
T ss_dssp             GGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             HHeEECCCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            9999999999999999776 788999988 56889999999999999999999999999999669999999999999999


Q ss_pred             cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcC-CEEEEeccCCC--CCcccchhhh
Q 048013          139 LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHR--EMTVPLTPAA  213 (216)
Q Consensus       139 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~  213 (216)
                      +|++.++++.+..+++.+.+++++   +.++|++||++|....++.++++++++ |+++.+|....  ..+++...++
T Consensus       235 lGa~~vi~~~~~~~~~~~~~~~~~---~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~  309 (374)
T 2jhf_A          235 VGATECVNPQDYKKPIQEVLTEMS---NGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLL  309 (374)
T ss_dssp             TTCSEEECGGGCSSCHHHHHHHHT---TSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHH
T ss_pred             hCCceEecccccchhHHHHHHHHh---CCCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCCCCCccccCHHHHh
Confidence            999998876432245666666652   348999999999877889999999999 99999997654  2344444433

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.7e-36  Score=249.24  Aligned_cols=209  Identities=24%  Similarity=0.406  Sum_probs=176.8

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCC---CCC-----------------CCCCccceeEEecC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGL---GSP-----------------PVHGCLANQVVHPA   60 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~---~~~-----------------~~~g~~~~~~~~~~   60 (216)
                      ++|++|++|++||||++.+..+|++|++|+.|++++|++....   |..                 ...|+|+||+.+|+
T Consensus        76 ~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~  155 (374)
T 1cdo_A           76 SVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQ  155 (374)
T ss_dssp             EECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEG
T ss_pred             EECCCCccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccccCCccccccCCcccccccCCccceeEEEEch
Confidence            4789999999999999999999999999999999999875421   110                 02489999999999


Q ss_pred             CceEECCCCCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH
Q 048013           61 DLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK  138 (216)
Q Consensus        61 ~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~  138 (216)
                      +.++++|+++++++|+.++ ++.|+|+++ +..+++++++|||+|+|++|++++|+|+.+|+.+|+++++++++++++++
T Consensus       156 ~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  235 (374)
T 1cdo_A          156 IAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV  235 (374)
T ss_dssp             GGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             hheEECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            9999999999999999776 788999988 56889999999999999999999999999999669999999999999999


Q ss_pred             cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcC-CEEEEeccCCC-CCcccchhh
Q 048013          139 LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHR-EMTVPLTPA  212 (216)
Q Consensus       139 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~  212 (216)
                      +|++.++++.+.++++.+.+++++  .+ ++|++||++|....++.++++++++ |+++.+|.... ..+++...+
T Consensus       236 lGa~~vi~~~~~~~~~~~~~~~~~--~~-g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~  308 (374)
T 1cdo_A          236 FGATDFVNPNDHSEPISQVLSKMT--NG-GVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQL  308 (374)
T ss_dssp             TTCCEEECGGGCSSCHHHHHHHHH--TS-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHH
T ss_pred             hCCceEEeccccchhHHHHHHHHh--CC-CCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCCCCCCcccCHHHH
Confidence            999998876432246666666653  34 8999999999877889999999999 99999997654 344544443

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=4.2e-36  Score=246.39  Aligned_cols=200  Identities=31%  Similarity=0.518  Sum_probs=182.0

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEP   80 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~   80 (216)
                      ++|++|+++++||||++.+...|++|.+|+.|++++|.+...+|. ..+|+|+||+.+|++.++++|+++++++|+++++
T Consensus        67 ~vG~~V~~~~~GdrV~~~~~~~~g~c~~c~~g~~~~c~~~~~~g~-~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~  145 (346)
T 4a2c_A           67 AVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGS-RRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEP  145 (346)
T ss_dssp             EECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCSSCEEBTT-TBCCSSBSEEEEEGGGEEECCTTSCGGGGGGHHH
T ss_pred             EECCCcccccCCCeEEeeeccCCCCcccccCCccccCCCcccccC-CCCcccccccccchheEEECCCCCCHHHHHhchH
Confidence            479999999999999999999999999999999999999888877 5789999999999999999999999999999888


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  160 (216)
                      +++++++++..+++++++|+|+|+|++|++++|+|+.+|+.++++++++++|+++++++|++.++++++  .+..+.+++
T Consensus       146 ~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~--~~~~~~~~~  223 (346)
T 4a2c_A          146 ITVGLHAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSE--MSAPQMQSV  223 (346)
T ss_dssp             HHHHHHHHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTT--SCHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCC--CCHHHHHHh
Confidence            888888889999999999999999999999999999999987889999999999999999999998643  456665655


Q ss_pred             HHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCC
Q 048013          161 IQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREM  205 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~  205 (216)
                      +  +.+.++|+++|++|.+..++.++++++++|+++++|....+.
T Consensus       224 ~--~~~~g~d~v~d~~G~~~~~~~~~~~l~~~G~~v~~g~~~~~~  266 (346)
T 4a2c_A          224 L--RELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDL  266 (346)
T ss_dssp             H--GGGCSSEEEEECSCSHHHHHHHHHHCCTTCEEEECCCCSSCE
T ss_pred             h--cccCCcccccccccccchhhhhhheecCCeEEEEEeccCCCc
Confidence            5  357789999999999888899999999999999999876653

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.2e-36  Score=252.53  Aligned_cols=208  Identities=25%  Similarity=0.461  Sum_probs=177.9

Q ss_pred             CCCCCCC------CCCCCCEEEEcCCcCCCCCcchh-CCCCCCCCCCCCCCCC-------CCCCccceeEEe-cCCceEE
Q 048013            1 KVGSEVK------TLVPGDRVALEPGISCWQCDYCK-GGRYNLCPESKGLGSP-------PVHGCLANQVVH-PADLCFK   65 (216)
Q Consensus         1 ~vG~~v~------~~~~Gd~V~~~~~~~~~~c~~~~-~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~-~~~~~~~   65 (216)
                      ++| +|+      +|++||||++.+..+|++|++|+ .|++++|++...+|..       ...|+|+||+.+ |++.+++
T Consensus        85 ~vG-~V~~~~~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~~g~~~~~~~~~~~~G~~aey~~v~~~~~~~~  163 (380)
T 1vj0_A           85 EVN-GEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLK  163 (380)
T ss_dssp             EES-SCCBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEE
T ss_pred             EeC-CccccccCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcceeccccccCCCCCCCccccceEEEcccceEEE
Confidence            367 888      89999999999999999999999 9999999987655531       246999999999 9999999


Q ss_pred             CCCCCCch-hhhcchhhHHHHHHHHHcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCE
Q 048013           66 LPDNVSLE-EGAMCEPLSVGVHACRRAN-IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADN  143 (216)
Q Consensus        66 ip~~~~~~-~aa~~~~~~~a~~~l~~~~-~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~  143 (216)
                      +|++++++ +|++++++.|+|++++..+ ++++++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|++.
T Consensus       164 iP~~l~~~~~Aa~~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~  243 (380)
T 1vj0_A          164 VSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADL  243 (380)
T ss_dssp             ECTTSCHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSE
T ss_pred             CCCCCChHHhHhhhcHHHHHHHHHHhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcE
Confidence            99999999 8888889999999998888 999999999999999999999999999536999999999999999999999


Q ss_pred             EEeCCC-CcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC-C-CCcccchh
Q 048013          144 IVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-R-EMTVPLTP  211 (216)
Q Consensus       144 ~~~~~~-~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~-~~~~~~~~  211 (216)
                      ++++.. .++++.+.++++  +.+.++|++||++|....++.++++|+++|+++.+|... . ..++++..
T Consensus       244 vi~~~~~~~~~~~~~v~~~--~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~  312 (380)
T 1vj0_A          244 TLNRRETSVEERRKAIMDI--THGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYE  312 (380)
T ss_dssp             EEETTTSCHHHHHHHHHHH--TTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHH
T ss_pred             EEeccccCcchHHHHHHHH--hCCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCCeeEchHH
Confidence            887531 134555555554  245689999999998678899999999999999999765 4 45666555

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.6e-36  Score=250.09  Aligned_cols=204  Identities=24%  Similarity=0.404  Sum_probs=175.2

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhh---c
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGA---M   77 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa---~   77 (216)
                      ++|++|++|++||||+..+..+|++|++|+.|++++|++...+|. ..+|+|+||+.+|++.++++|+++++++|+   .
T Consensus        87 ~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~-~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~  165 (359)
T 1h2b_A           87 EVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGL-NIDGGFAEFMRTSHRSVIKLPKDISREKLVEMAP  165 (359)
T ss_dssp             EECTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTT-TBCCSSBSEEEECGGGEEECCTTCCHHHHHHTGG
T ss_pred             EECCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCcccccc-CCCCcccceEEechHhEEECCCCCCHHHHhhccc
Confidence            478999999999999998889999999999999999998877775 567999999999999999999999999998   3


Q ss_pred             ch-hhHHHHHHHHH--cCCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCccc
Q 048013           78 CE-PLSVGVHACRR--ANIGPETNVLIMGSGPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQD  153 (216)
Q Consensus        78 ~~-~~~~a~~~l~~--~~~~~~~~vlv~Gag~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  153 (216)
                      +. .+.|+|++++.  .+++++++|||+|+|++|++++|+|+.+ |+ +|++++++++++++++++|++.++++++  + 
T Consensus       166 l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~--~-  241 (359)
T 1h2b_A          166 LADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIALDVKEEKLKLAERLGADHVVDARR--D-  241 (359)
T ss_dssp             GGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEEEESSHHHHHHHHHTTCSEEEETTS--C-
T ss_pred             hhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHhCCCEEEeccc--h-
Confidence            33 56689999976  8999999999999999999999999999 99 5999999999999999999999988643  3 


Q ss_pred             HHHHHHHHHHHcCCCccEEEEcCCCHH--HHHHHHHHhhcCCEEEEeccCCCCCcccchhhhh
Q 048013          154 IAEEVEKIQKAMGTGIDVSFDCAGFNK--TMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA  214 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~d~vi~~~g~~~--~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  214 (216)
                      +.+.++++  +.++++|++||++|++.  .++.++++  ++|+++.+|..... ++++..++.
T Consensus       242 ~~~~v~~~--~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~G~~v~~g~~~~~-~~~~~~~~~  299 (359)
T 1h2b_A          242 PVKQVMEL--TRGRGVNVAMDFVGSQATVDYTPYLLG--RMGRLIIVGYGGEL-RFPTIRVIS  299 (359)
T ss_dssp             HHHHHHHH--TTTCCEEEEEESSCCHHHHHHGGGGEE--EEEEEEECCCSSCC-CCCHHHHHH
T ss_pred             HHHHHHHH--hCCCCCcEEEECCCCchHHHHHHHhhc--CCCEEEEEeCCCCC-CCCHHHHHh
Confidence            65666665  24568999999999965  77777777  99999999976654 566555443

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=4.5e-36  Score=248.62  Aligned_cols=209  Identities=26%  Similarity=0.408  Sum_probs=175.8

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCC---CC-----C------------CCCCccceeEEecC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGL---GS-----P------------PVHGCLANQVVHPA   60 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~---~~-----~------------~~~g~~~~~~~~~~   60 (216)
                      ++|++|++|++||||++.+..+|++|.+|+.|++++|.+....   |.     .            ...|+|+||+.+|+
T Consensus        74 ~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~  153 (373)
T 2fzw_A           74 SVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVAD  153 (373)
T ss_dssp             EECTTCCSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEG
T ss_pred             EECCCCCCCCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccccCCcccccccccccccccCCccceeEEEEch
Confidence            4789999999999999999999999999999999999865310   11     0            13599999999999


Q ss_pred             CceEECCCCCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH
Q 048013           61 DLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK  138 (216)
Q Consensus        61 ~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~  138 (216)
                      +.++++|+++++++|+.++ ++.|+|+++ +..+++++++|||+|+|++|++++|+|+.+|+++|+++++++++++++++
T Consensus       154 ~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~  233 (373)
T 2fzw_A          154 ISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE  233 (373)
T ss_dssp             GGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             hheEECCCCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            9999999999999999776 788999988 56889999999999999999999999999999669999999999999999


Q ss_pred             cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcC-CEEEEeccCCC--CCcccchhh
Q 048013          139 LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHR--EMTVPLTPA  212 (216)
Q Consensus       139 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~  212 (216)
                      +|++.++++.+..+++.+.+++++   +.++|++||++|....++.++++++++ |+++.+|....  ..+++...+
T Consensus       234 lGa~~vi~~~~~~~~~~~~v~~~~---~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~  307 (373)
T 2fzw_A          234 FGATECINPQDFSKPIQEVLIEMT---DGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQL  307 (373)
T ss_dssp             HTCSEEECGGGCSSCHHHHHHHHT---TSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHH
T ss_pred             cCCceEeccccccccHHHHHHHHh---CCCCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCCCCceeeeCHHHH
Confidence            999998876432245666666652   348999999999877889999999999 99999997654  234444433

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=1.4e-36  Score=249.92  Aligned_cols=205  Identities=25%  Similarity=0.373  Sum_probs=178.0

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCC---CCCCCCCCccceeEEecCC--ceEECCCCCCchhh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKG---LGSPPVHGCLANQVVHPAD--LCFKLPDNVSLEEG   75 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~--~~~~ip~~~~~~~a   75 (216)
                      ++|++|++|++||||++.+..+|++|.+|+.|++++|.+...   ++. ..+|+|+||+.+|+.  .++++|+++++++|
T Consensus        67 ~vG~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~-~~~G~~aey~~v~~~~~~~~~iP~~~~~~~a  145 (352)
T 3fpc_A           67 EVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSN-VKDGVFGEFFHVNDADMNLAHLPKEIPLEAA  145 (352)
T ss_dssp             EECTTCCSCCTTCEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTT-TBCCSSBSCEEESSHHHHCEECCTTSCHHHH
T ss_pred             EECCCCCcCCCCCEEEEccccCCCCchhhcCCCcCCcccccccccccc-CCCCcccceEEeccccCeEEECCCCCCHHHH
Confidence            479999999999999999999999999999999999876432   222 467999999999986  89999999999999


Q ss_pred             hcc-hhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccH
Q 048013           76 AMC-EPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI  154 (216)
Q Consensus        76 a~~-~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  154 (216)
                      +.+ .+++|+|++++..+++++++|||+|+|++|++++|+|+.+|+++|++++++++++++++++|++.+++++  +.++
T Consensus       146 a~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~--~~~~  223 (352)
T 3fpc_A          146 VMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYK--NGDI  223 (352)
T ss_dssp             TTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGG--GSCH
T ss_pred             hhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCC--CcCH
Confidence            977 4889999999989999999999999999999999999999995699999999999999999999988753  3567


Q ss_pred             HHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccch
Q 048013          155 AEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLT  210 (216)
Q Consensus       155 ~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~  210 (216)
                      .+.++++  +.++++|++||++|++..++.++++|+++|+++.+|......++++.
T Consensus       224 ~~~v~~~--t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~  277 (352)
T 3fpc_A          224 VEQILKA--TDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIP  277 (352)
T ss_dssp             HHHHHHH--TTTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSCSEEEEE
T ss_pred             HHHHHHH--cCCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEecccCCCCceecc
Confidence            7777665  35678999999999977889999999999999999976654444433

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.8e-36  Score=250.83  Aligned_cols=208  Identities=25%  Similarity=0.439  Sum_probs=176.4

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCC-----------------CCC-----CCCCccceeEEe
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGL-----------------GSP-----PVHGCLANQVVH   58 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~-----------------~~~-----~~~g~~~~~~~~   58 (216)
                      ++|++|++|++||||++.+ .+|++|++|+.|++++|++...+                 |..     ...|+|+||+.+
T Consensus        73 ~vG~~v~~~~~GdrV~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v  151 (371)
T 1f8f_A           73 AIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALS  151 (371)
T ss_dssp             EECTTCCSCCTTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEE
T ss_pred             EeCCCCCCCCCCCEEEecC-CCCCCChhhhCcCccccccccccccccccccccccccccCCccccccccCCccccCeEEe
Confidence            4789999999999999999 99999999999999999865311                 100     125899999999


Q ss_pred             cCCceEECCCCCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH
Q 048013           59 PADLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA  136 (216)
Q Consensus        59 ~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~  136 (216)
                      |++.++++|+++++++|+.++ ++.|+|+++ +..+++++++|||+|+|++|++++|+|+.+|+++|+++++++++++++
T Consensus       152 ~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a  231 (371)
T 1f8f_A          152 RENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELA  231 (371)
T ss_dssp             EGGGEEEECTTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH
T ss_pred             chhheEECCCCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence            999999999999999998776 888999999 678899999999999999999999999999996689999999999999


Q ss_pred             HHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC--CCcccchhhhh
Q 048013          137 KKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR--EMTVPLTPAAA  214 (216)
Q Consensus       137 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~  214 (216)
                      +++|++.++++.+  +++.+.++++  +.+ ++|++||++|....++.++++|+++|+++.+|....  ..++++..++.
T Consensus       232 ~~lGa~~vi~~~~--~~~~~~~~~~--~~g-g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~  306 (371)
T 1f8f_A          232 KQLGATHVINSKT--QDPVAAIKEI--TDG-GVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLL  306 (371)
T ss_dssp             HHHTCSEEEETTT--SCHHHHHHHH--TTS-CEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHH
T ss_pred             HHcCCCEEecCCc--cCHHHHHHHh--cCC-CCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCCCCCccccCHHHHHh
Confidence            9999999888643  4666666654  234 899999999987788999999999999999997653  34566555443

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=2.7e-36  Score=247.49  Aligned_cols=202  Identities=28%  Similarity=0.455  Sum_probs=173.9

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCC-----CCCCCCCCccceeEEec-CCceEECCCCCCchh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKG-----LGSPPVHGCLANQVVHP-ADLCFKLPDNVSLEE   74 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~-~~~~~~ip~~~~~~~   74 (216)
                      ++|++|++|++||||+..+...|++|++|+.|++++|.....     .+. ..+|+|+||+.+| ++.++++|+ +++++
T Consensus        70 ~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~-~~~G~~aey~~v~~~~~~~~~p~-~~~~~  147 (345)
T 3jv7_A           70 ELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGL-GSPGSMAEYMIVDSARHLVPIGD-LDPVA  147 (345)
T ss_dssp             EECTTCCSCCTTCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTT-TBCCSSBSEEEESCGGGEEECTT-CCHHH
T ss_pred             EECCCCCCCCCCCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCc-CCCceeeEEEEecchhceEeCCC-CCHHH
Confidence            478999999999999999999999999999999999943221     222 4579999999999 999999999 99999


Q ss_pred             hhcch-hhHHHHHHHHHc--CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCc
Q 048013           75 GAMCE-PLSVGVHACRRA--NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNL  151 (216)
Q Consensus        75 aa~~~-~~~~a~~~l~~~--~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~  151 (216)
                      ++.+. ++.|||++++..  .++++++|+|+|+|++|++++|+|+.+|..+|++++++++++++++++|++.++++++  
T Consensus       148 aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~--  225 (345)
T 3jv7_A          148 AAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGA--  225 (345)
T ss_dssp             HGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECST--
T ss_pred             hhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCC--
Confidence            99554 889999999764  8999999999999999999999999995447999999999999999999999888632  


Q ss_pred             ccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC-CCcccc
Q 048013          152 QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR-EMTVPL  209 (216)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~  209 (216)
                       ++.+.+++++  .++++|++||++|++..++.++++|+++|+++.+|.... ..++++
T Consensus       226 -~~~~~v~~~t--~g~g~d~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~  281 (345)
T 3jv7_A          226 -GAADAIRELT--GGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVGF  281 (345)
T ss_dssp             -THHHHHHHHH--GGGCEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCTTCCEEEST
T ss_pred             -cHHHHHHHHh--CCCCCeEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCCCCcCH
Confidence             6666666653  567899999999997788999999999999999997665 455553

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=3.5e-36  Score=251.74  Aligned_cols=210  Identities=26%  Similarity=0.425  Sum_probs=180.0

Q ss_pred             CCCCCC------CCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCc--
Q 048013            1 KVGSEV------KTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSL--   72 (216)
Q Consensus         1 ~vG~~v------~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~--   72 (216)
                      ++|++|      ++|++||||++.+..+|++|.+|+.|++++|.+...+|. ..+|+|+||+.+|++.++++|+++++  
T Consensus       105 ~vG~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~~~~  183 (404)
T 3ip1_A          105 EAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNELGF-NVDGAFAEYVKVDAKYAWSLRELEGVYE  183 (404)
T ss_dssp             EECTTCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEEBTT-TBCCSSBSEEEEEGGGEEECGGGBTTBC
T ss_pred             EECCCccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccccCC-CCCCCCcceEEechHHeEeccccccccc
Confidence            368888      889999999999999999999999999999999888877 56799999999999999999998753  


Q ss_pred             ----h-hhhcchhhHHHHHHHH-H-cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEE
Q 048013           73 ----E-EGAMCEPLSVGVHACR-R-ANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIV  145 (216)
Q Consensus        73 ----~-~aa~~~~~~~a~~~l~-~-~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~  145 (216)
                          . .|++..++.+||+++. . .+++++++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|++.++
T Consensus       184 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi  263 (404)
T 3ip1_A          184 GDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVI  263 (404)
T ss_dssp             THHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEE
T ss_pred             cccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEE
Confidence                2 3445568999999994 3 4799999999999999999999999999997799999999999999999999988


Q ss_pred             eCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCH-HHHHHHHHHh----hcCCEEEEeccCCCCCcccchhhhhc
Q 048013          146 KVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFN-KTMSTALSAT----RAGGKVCLVGMGHREMTVPLTPAAAS  215 (216)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~~l----~~~G~~v~~g~~~~~~~~~~~~~~~~  215 (216)
                      +++  ++++.+.++++  +.++++|++||++|++ ..+..++++|    +++|+++.+|......++++..++.|
T Consensus       264 ~~~--~~~~~~~i~~~--t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~  334 (404)
T 3ip1_A          264 DPT--KENFVEAVLDY--TNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVR  334 (404)
T ss_dssp             CTT--TSCHHHHHHHH--TTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCCCSCEEECHHHHHHT
T ss_pred             cCC--CCCHHHHHHHH--hCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCCCCCCcccHHHHhcc
Confidence            754  35777777766  3567899999999995 3667777777    99999999998777677777766543

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=2.6e-36  Score=248.70  Aligned_cols=202  Identities=18%  Similarity=0.326  Sum_probs=174.5

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcC--CCCCcchhCCCCCCCCCCCCC--CCCCCCCccceeEEecCCceEECCCCCCchhhh
Q 048013            1 KVGSEVKTLVPGDRVALEPGIS--CWQCDYCKGGRYNLCPESKGL--GSPPVHGCLANQVVHPADLCFKLPDNVSLEEGA   76 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~--~~~c~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa   76 (216)
                      ++|++ ++|++||||++.+...  |++|++|+.|++++|++...+  |....+|+|+||+.+|++.++++|++++ ++|+
T Consensus        70 ~vG~~-~~~~vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~-~~aa  147 (357)
T 2b5w_A           70 VDPND-TELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQA-ELGF  147 (357)
T ss_dssp             EECTT-SSCCTTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEEETTBEECCSCBSEEEEEGGGEEECCGGGS-TTGG
T ss_pred             EECCC-CCCCCCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccccCccCCCcceeeEEEEchHHeEECCCCcc-hhhh
Confidence            47888 8999999999988877  999999999999999987766  5323469999999999999999999999 8777


Q ss_pred             cchhhHHHHHHHHHcCCCCC------CEEEEEcCCHHHHHH-HHHH-HHcCCCeEEEEcCChH---HHHHHHHcCCCEEE
Q 048013           77 MCEPLSVGVHACRRANIGPE------TNVLIMGSGPIGLVT-MLAA-RAFGAPRIVIVDVDDY---RLSVAKKLGADNIV  145 (216)
Q Consensus        77 ~~~~~~~a~~~l~~~~~~~~------~~vlv~Gag~~G~~~-i~~a-~~~g~~~vv~~~~~~~---~~~~~~~~g~~~~~  145 (216)
                      +..++.|||++++..+++++      ++|||+|+|++|+++ +|+| +.+|+++|++++++++   ++++++++|++.+ 
T Consensus       148 l~~~~~ta~~al~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v-  226 (357)
T 2b5w_A          148 LIEPISITEKALEHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV-  226 (357)
T ss_dssp             GHHHHHHHHHHHHHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE-
T ss_pred             hhchHHHHHHHHHhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc-
Confidence            77799999999987888999      999999999999999 9999 9999966999999988   9999999999988 


Q ss_pred             eCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC-CCCcccchhh
Q 048013          146 KVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-REMTVPLTPA  212 (216)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~  212 (216)
                      ++++  +++.+ +.++   .+ ++|++||++|....++.++++++++|+++.+|... ...++++..+
T Consensus       227 ~~~~--~~~~~-i~~~---~g-g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~  287 (357)
T 2b5w_A          227 DSRQ--TPVED-VPDV---YE-QMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAF  287 (357)
T ss_dssp             ETTT--SCGGG-HHHH---SC-CEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCHHHH
T ss_pred             CCCc--cCHHH-HHHh---CC-CCCEEEECCCChHHHHHHHHHHhcCCEEEEEeCCCCCCceecHHHH
Confidence            7643  45555 5554   34 89999999999668899999999999999999766 4556666555

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=1e-35  Score=243.52  Aligned_cols=206  Identities=33%  Similarity=0.487  Sum_probs=177.6

Q ss_pred             CCCCCCCCCCCCCEEEEcCCc-CCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch
Q 048013            1 KVGSEVKTLVPGDRVALEPGI-SCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~-~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~   79 (216)
                      ++|++|++|++||||++.+.. .|++|++|+.|++++|++....|. ..+|+|+||+.+|++.++++|+++++++|+.++
T Consensus        69 ~vG~~v~~~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~-~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~  147 (339)
T 1rjw_A           69 EVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGY-SVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIF  147 (339)
T ss_dssp             EECTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTT-TBCCSSBSEEEEEGGGCEECCTTSCHHHHGGGG
T ss_pred             EECCCCCcCCCCCEEEEecCCCCCCCCchhhCcCcccCCCcceeec-CCCCcceeeEEechHHEEECCCCCCHHHhhhhh
Confidence            478999999999999987654 599999999999999998877665 467999999999999999999999999988665


Q ss_pred             -hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           80 -PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        80 -~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                       ++.|+|++++..+++++++|||+|+|++|++++|+++.+|+ +|+++++++++++.++++|++.++++.+  +++.+.+
T Consensus       148 ~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~d~~~--~~~~~~~  224 (339)
T 1rjw_A          148 CAGVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPLK--EDAAKFM  224 (339)
T ss_dssp             THHHHHHHHHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECTTT--SCHHHHH
T ss_pred             hhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEecCCC--ccHHHHH
Confidence             67789999977789999999999998899999999999999 5999999999999999999998877643  4666666


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhh
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA  214 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  214 (216)
                      .++.    .++|++||++|....++.++++|+++|+++.+|...+..++++..++.
T Consensus       225 ~~~~----~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  276 (339)
T 1rjw_A          225 KEKV----GGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVL  276 (339)
T ss_dssp             HHHH----SSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHHHHHH
T ss_pred             HHHh----CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCCCccCHHHHHh
Confidence            5552    489999999998788899999999999999999866555555554443

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.1e-35  Score=245.53  Aligned_cols=197  Identities=28%  Similarity=0.479  Sum_probs=167.6

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCC------CCCC---CCCCCccceeEEecCC--ceEECCCC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESK------GLGS---PPVHGCLANQVVHPAD--LCFKLPDN   69 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~------~~~~---~~~~g~~~~~~~~~~~--~~~~ip~~   69 (216)
                      ++|++|++|++||||++.+..+|++|++|+.|++++|.+..      .+|.   ....|+|+||+++|++  .++++|++
T Consensus        75 ~vG~~v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~~~~~P~~  154 (398)
T 1kol_A           75 EKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDR  154 (398)
T ss_dssp             EECTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCH
T ss_pred             EECCCCCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccCCCCCceeeeEEEecchhCeEEECCCC
Confidence            47899999999999999888999999999999999998764      1232   1246999999999987  89999999


Q ss_pred             CCchh----hhcc-hhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEE
Q 048013           70 VSLEE----GAMC-EPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNI  144 (216)
Q Consensus        70 ~~~~~----aa~~-~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~  144 (216)
                      +++++    ++.+ .++.|+|++++..+++++++|||+|+|++|++++|+|+.+|+++|++++++++++++++++|++ +
T Consensus       155 ~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~  233 (398)
T 1kol_A          155 DKAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE-I  233 (398)
T ss_dssp             HHHHHTHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE-E
T ss_pred             cchhhhcccccccccHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCc-E
Confidence            98887    4544 4888999999888999999999999999999999999999997799999999999999999996 6


Q ss_pred             EeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCH---------------HHHHHHHHHhhcCCEEEEeccC
Q 048013          145 VKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFN---------------KTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~---------------~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      +++.. ..++.+.++++  +.+.++|++||++|..               ..++.++++++++|+++.+|..
T Consensus       234 i~~~~-~~~~~~~v~~~--t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~  302 (398)
T 1kol_A          234 ADLSL-DTPLHEQIAAL--LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY  302 (398)
T ss_dssp             EETTS-SSCHHHHHHHH--HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred             EccCC-cchHHHHHHHH--hCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEeccc
Confidence            66543 23366666665  3567899999999974               2678999999999999999965

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.5e-34  Score=237.13  Aligned_cols=203  Identities=23%  Similarity=0.362  Sum_probs=173.0

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEec-CCceEECCCCCCchhhhcch
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHP-ADLCFKLPDNVSLEEGAMCE   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~ip~~~~~~~aa~~~   79 (216)
                      ++|++ ++|++||||+..+..+|++|.+|+.|++++|.+...+|. ..+|+|+||+.+| ++.++++ +++++++|+.+.
T Consensus        73 ~vG~~-~~~~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~-~~~G~~aey~~v~~~~~~~~i-~~l~~~~aa~l~  149 (344)
T 2h6e_A           73 EVGEL-AKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQ-TTNGGFSEYMLVKSSRWLVKL-NSLSPVEAAPLA  149 (344)
T ss_dssp             EECTT-CCCCTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBCBTT-TBCCSSBSEEEESCGGGEEEE-SSSCHHHHGGGG
T ss_pred             EECCC-CCCCCCCEEEECCCCCCCCChhhhCCCcccCCCcccccc-ccCCcceeeEEecCcccEEEe-CCCCHHHhhhhh
Confidence            46888 899999999888889999999999999999998777765 4679999999999 9999999 999999998554


Q ss_pred             -hhHHHHHHHHHc-----CCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCc
Q 048013           80 -PLSVGVHACRRA-----NIGPETNVLIMGSGPIGLVTMLAARAF--GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNL  151 (216)
Q Consensus        80 -~~~~a~~~l~~~-----~~~~~~~vlv~Gag~~G~~~i~~a~~~--g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~  151 (216)
                       .+.|+|++++..     ++ ++++|||+|+|++|++++|+|+.+  |++ |++++++++++++++++|++.++++.+. 
T Consensus       150 ~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~-Vi~~~~~~~~~~~~~~lGa~~vi~~~~~-  226 (344)
T 2h6e_A          150 DAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNIT-IVGISRSKKHRDFALELGADYVSEMKDA-  226 (344)
T ss_dssp             THHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTCE-EEEECSCHHHHHHHHHHTCSEEECHHHH-
T ss_pred             hhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCCE-EEEEeCCHHHHHHHHHhCCCEEeccccc-
Confidence             677999999766     88 999999999999999999999999  995 9999999999999999999988764210 


Q ss_pred             ccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhh
Q 048013          152 QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA  214 (216)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  214 (216)
                      +   +.+.+++  .+.++|++||++|.+..++.++++++++|+++.+|......++++..++.
T Consensus       227 ~---~~~~~~~--~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~  284 (344)
T 2h6e_A          227 E---SLINKLT--DGLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGMEGKRVSLEAFDTAV  284 (344)
T ss_dssp             H---HHHHHHH--TTCCEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSCCCCCHHHHHH
T ss_pred             h---HHHHHhh--cCCCccEEEECCCChHHHHHHHHHhhcCCEEEEeCCCCCCcccCHHHHhh
Confidence            1   2233442  35689999999999668899999999999999999876656666665544

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=2e-35  Score=246.68  Aligned_cols=196  Identities=26%  Similarity=0.490  Sum_probs=167.3

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCC--C------CCCCC--CCCCCccceeEEecCC--ceEECCC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE--S------KGLGS--PPVHGCLANQVVHPAD--LCFKLPD   68 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~--~------~~~~~--~~~~g~~~~~~~~~~~--~~~~ip~   68 (216)
                      ++|++|++|++||||++.+..+|++|++|+.|++++|.+  .      ..+|.  ....|+|+||+.+|++  .++++|+
T Consensus        74 ~vG~~v~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~~~~G~~aey~~v~~~~~~~~~iP~  153 (398)
T 2dph_A           74 EKGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKFGD  153 (398)
T ss_dssp             EECTTCCSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBSSCCCSSBSEEEESSHHHHCEECSS
T ss_pred             EECCCCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccccCCCCceeeeeEEeccccCeEEECCC
Confidence            478999999999999999999999999999999999987  2      12232  1246999999999987  8999999


Q ss_pred             CCCchh----hhcc-hhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCE
Q 048013           69 NVSLEE----GAMC-EPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADN  143 (216)
Q Consensus        69 ~~~~~~----aa~~-~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~  143 (216)
                      ++++++    ++.+ .++.|+|++++..+++++++|||+|+|++|++++|+|+.+|+++|++++++++++++++++|++ 
T Consensus       154 ~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-  232 (398)
T 2dph_A          154 KEQAMEKIKDLTLISDILPTGFHGCVSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFE-  232 (398)
T ss_dssp             HHHHHHTHHHHTTTTTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCE-
T ss_pred             CCChhhhcchhhhhcCHHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-
Confidence            999887    6655 4889999999888999999999999999999999999999996699999999999999999995 


Q ss_pred             EEeCCCCcccH-HHHHHHHHHHcCCCccEEEEcCCCH--------------HHHHHHHHHhhcCCEEEEeccC
Q 048013          144 IVKVSTNLQDI-AEEVEKIQKAMGTGIDVSFDCAGFN--------------KTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       144 ~~~~~~~~~~~-~~~~~~~~~~~~~~~d~vi~~~g~~--------------~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      ++++.+  +++ .+.+++++  .+.++|++||++|..              ..++.++++|+++|+++++|..
T Consensus       233 ~i~~~~--~~~~~~~~~~~~--~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~  301 (398)
T 2dph_A          233 TIDLRN--SAPLRDQIDQIL--GKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIY  301 (398)
T ss_dssp             EEETTS--SSCHHHHHHHHH--SSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCC
T ss_pred             EEcCCC--cchHHHHHHHHh--CCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccc
Confidence            677543  344 56666653  456899999999974              2678999999999999999975

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=5.8e-35  Score=239.44  Aligned_cols=207  Identities=31%  Similarity=0.524  Sum_probs=177.6

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhh-cch
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGA-MCE   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa-~~~   79 (216)
                      ++|++|++|++||||++.+..+|++|++|+.|++++|++...+|. ..+|+|+||+.+|++.++++|+++++++|+ +..
T Consensus        71 ~vG~~v~~~~vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~G~-~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~  149 (343)
T 2eih_A           71 AVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGE-HRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPL  149 (343)
T ss_dssp             EECSSCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTT-SSCCSSBSEEEEEGGGEEECCTTSCHHHHHHSHH
T ss_pred             EECCCCCCCCCCCEEEECCCCCcccchhhccCcccccccccccCc-CCCccceeEEEeChHHeEECCCCCCHHHHhhchh
Confidence            478999999999999999999999999999999999998877665 357999999999999999999999999999 555


Q ss_pred             hhHHHHHHHHH-cCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           80 PLSVGVHACRR-ANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        80 ~~~~a~~~l~~-~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                      ++.|+|++++. .+++++++|||+|+ |++|++++|+++..|+ +|+++++++++++.++++|++.++++.+  +++.+.
T Consensus       150 ~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~ga~~~~d~~~--~~~~~~  226 (343)
T 2eih_A          150 TFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADETVNYTH--PDWPKE  226 (343)
T ss_dssp             HHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTS--TTHHHH
T ss_pred             hHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEcCCc--ccHHHH
Confidence            89999999965 68999999999997 9999999999999999 5999999999999999999998877543  455555


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCC-Ccccchhhhh
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHRE-MTVPLTPAAA  214 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~  214 (216)
                      +.++  +.+.++|++||++|. ..++.++++|+++|+++.+|..... .++++..++.
T Consensus       227 ~~~~--~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~  281 (343)
T 2eih_A          227 VRRL--TGGKGADKVVDHTGA-LYFEGVIKATANGGRIAIAGASSGYEGTLPFAHVFY  281 (343)
T ss_dssp             HHHH--TTTTCEEEEEESSCS-SSHHHHHHHEEEEEEEEESSCCCSCCCCCCTTHHHH
T ss_pred             HHHH--hCCCCceEEEECCCH-HHHHHHHHhhccCCEEEEEecCCCCcCccCHHHHHh
Confidence            5554  235689999999995 7789999999999999999976543 2466555443

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=2.4e-35  Score=242.13  Aligned_cols=197  Identities=19%  Similarity=0.250  Sum_probs=167.6

Q ss_pred             CCCCCCCCCCCCCEEEEcCC-cCCCCCcchhCCCCCCCCCCCCCCCC---------CCCCccceeEEecCCceEECCCCC
Q 048013            1 KVGSEVKTLVPGDRVALEPG-ISCWQCDYCKGGRYNLCPESKGLGSP---------PVHGCLANQVVHPADLCFKLPDNV   70 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~-~~~~~c~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~~~~ip~~~   70 (216)
                      ++|++|++|++||||++.+. .+|++|++|+.|++++|. ....+..         ...|+|+||+.+|++.++++|+++
T Consensus        72 ~vG~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~-~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~  150 (348)
T 3two_A           72 EVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCT-KVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKNA  150 (348)
T ss_dssp             EECTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCT-TCEESSSSEEGGGTTEECCCSSBSEEEEEGGGCEECCTTS
T ss_pred             EECCCCCCCCCCCEEEEeCCcCCCCCChhHhCCCcccCc-ccccccccccccccCCcCCccccceEEechhhEEECCCCC
Confidence            47899999999999998654 799999999999999998 4433331         123999999999999999999999


Q ss_pred             Cchhhhcch-hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCC
Q 048013           71 SLEEGAMCE-PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVST  149 (216)
Q Consensus        71 ~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~  149 (216)
                      ++++|+.++ .+.|||++++..+++++++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|++.++ .  
T Consensus       151 ~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~-~--  226 (348)
T 3two_A          151 PLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSMGVKHFY-T--  226 (348)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHTTCSEEE-S--
T ss_pred             CHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCeec-C--
Confidence            999999665 67899999988899999999999999999999999999999 599999999999999999999887 2  


Q ss_pred             CcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC-CCCc-ccchhhh
Q 048013          150 NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-REMT-VPLTPAA  213 (216)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~-~~~~~~~  213 (216)
                      +.+.           ...++|++||++|+...++.++++|+++|+++.+|... ...+ ++...++
T Consensus       227 ~~~~-----------~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~  281 (348)
T 3two_A          227 DPKQ-----------CKEELDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFI  281 (348)
T ss_dssp             SGGG-----------CCSCEEEEEECCCSCCCHHHHHTTEEEEEEEEECCCCCGGGCCEEEHHHHH
T ss_pred             CHHH-----------HhcCCCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCCcccCCHHHHH
Confidence            1111           12289999999999658899999999999999999876 5554 6655554

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-34  Score=236.29  Aligned_cols=208  Identities=22%  Similarity=0.304  Sum_probs=176.9

Q ss_pred             CCCCCCCCCCCCCEEEEcCCc-CCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch
Q 048013            1 KVGSEVKTLVPGDRVALEPGI-SCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~-~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~   79 (216)
                      ++|++|++|++||||++.+.. .|++|++|+.|++++|++....|. ..+|+|+||+.+|++.++++|+++++++|+.++
T Consensus        74 ~vG~~v~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~  152 (347)
T 2hcy_A           74 GMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGY-THDGSFQQYATADAVQAAHIPQGTDLAQVAPIL  152 (347)
T ss_dssp             EECTTCCSCCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEEBTT-TBCCSSBSEEEEETTTSEEECTTCCHHHHGGGG
T ss_pred             EECCCCCCCcCCCEEEEecCCCCCCCChhhhCCCcccCcccccccc-CCCCcceeEEEeccccEEECCCCCCHHHHHHHh
Confidence            478999999999999987654 599999999999999998876665 467999999999999999999999999988665


Q ss_pred             -hhHHHHHHHHHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           80 -PLSVGVHACRRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        80 -~~~~a~~~l~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                       ++.|+|++++..+++++++|||+|+ |++|++++++++..|+ +|+++++++++.+.++++|++.++++.+ .+++.+.
T Consensus       153 ~~~~ta~~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~g~~~~~d~~~-~~~~~~~  230 (347)
T 2hcy_A          153 CAGITVYKALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIGGEVFIDFTK-EKDIVGA  230 (347)
T ss_dssp             THHHHHHHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHTTCCEEEETTT-CSCHHHH
T ss_pred             hhHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHcCCceEEecCc-cHhHHHH
Confidence             6788999998778999999999997 8999999999999999 5999999999999999999988877642 3466666


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC-CCcccchhhhh
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR-EMTVPLTPAAA  214 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~  214 (216)
                      +.++.  .+ ++|++||++|....++.+++.|+++|+++.+|.... ..++++..++.
T Consensus       231 ~~~~~--~~-~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~  285 (347)
T 2hcy_A          231 VLKAT--DG-GAHGVINVSVSEAAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVV  285 (347)
T ss_dssp             HHHHH--TS-CEEEEEECSSCHHHHHHHTTSEEEEEEEEECCCCTTCEEEEEHHHHHH
T ss_pred             HHHHh--CC-CCCEEEECCCcHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCCHHHHhh
Confidence            66653  34 899999999987788999999999999999997653 34555554443

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6.4e-35  Score=241.32  Aligned_cols=203  Identities=22%  Similarity=0.290  Sum_probs=167.0

Q ss_pred             CCCCCCCCCCCCCEEEEcCC-cCCCCCcchhCCCCCCCCCCC--CC------CCCCCCCccceeEEecCCceEECCCC-C
Q 048013            1 KVGSEVKTLVPGDRVALEPG-ISCWQCDYCKGGRYNLCPESK--GL------GSPPVHGCLANQVVHPADLCFKLPDN-V   70 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~-~~~~~c~~~~~~~~~~~~~~~--~~------~~~~~~g~~~~~~~~~~~~~~~ip~~-~   70 (216)
                      ++|++|++|++||||++.+. ..|++|.+|+.|++++|++..  +.      |. ...|+|+||+.+|++.++++|++ +
T Consensus        90 ~vG~~V~~~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~-~~~G~~aeyv~v~~~~~~~~P~~~l  168 (369)
T 1uuf_A           90 AVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPG-HTLGGYSQQIVVHERYVLRIRHPQE  168 (369)
T ss_dssp             EECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTS-BCCCSSBSEEEEEGGGCEECCSCGG
T ss_pred             EECCCCCCCCCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCC-CCCCcccceEEEcchhEEECCCCCC
Confidence            47899999999999998876 479999999999999999762  21      21 34699999999999999999999 9


Q ss_pred             Cchhhhcch-hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCC
Q 048013           71 SLEEGAMCE-PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVST  149 (216)
Q Consensus        71 ~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~  149 (216)
                      ++++|+.++ ++.|||++++..+++++++|||+|+|++|++++|+|+.+|++ |++++++++++++++++|++.++++.+
T Consensus       169 s~~~aa~l~~~~~tA~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~  247 (369)
T 1uuf_A          169 QLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAH-VVAFTTSEAKREAAKALGADEVVNSRN  247 (369)
T ss_dssp             GHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHTCSEEEETTC
T ss_pred             CHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHcCCcEEecccc
Confidence            999988654 778999999878899999999999999999999999999995 999999999999999999999887542


Q ss_pred             CcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCC-cccchhhhh
Q 048013          150 NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREM-TVPLTPAAA  214 (216)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~  214 (216)
                        +++   ++++    ..++|++||++|.+..++.++++|+++|+++.+|...... ++++..+++
T Consensus       248 --~~~---~~~~----~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~  304 (369)
T 1uuf_A          248 --ADE---MAAH----LKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIM  304 (369)
T ss_dssp             --HHH---HHTT----TTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHT
T ss_pred             --HHH---HHHh----hcCCCEEEECCCCHHHHHHHHHHhccCCEEEEeccCCCCccccCHHHHHh
Confidence              222   2222    2589999999998557789999999999999999765544 555555443

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=5.1e-34  Score=234.17  Aligned_cols=206  Identities=30%  Similarity=0.437  Sum_probs=175.8

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecC-CceEECCCCCCchhhhcch
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA-DLCFKLPDNVSLEEGAMCE   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~ip~~~~~~~aa~~~   79 (216)
                      ++|++|++|++||||+..+..+|++|++|+.|++++|++...+|. ..+|+|+||+.+|+ +.++++ +++++++|+.+.
T Consensus        76 ~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~-~~~G~~aey~~v~~~~~~~~i-~~~~~~~aa~l~  153 (347)
T 1jvb_A           76 EVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGI-NFDGAYAEYVIVPHYKYMYKL-RRLNAVEAAPLT  153 (347)
T ss_dssp             EECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTT-TBCCSSBSEEEESCGGGEEEC-SSSCHHHHGGGG
T ss_pred             EECCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCcccccccc-cCCCcceeEEEecCccceEEe-CCCCHHHcccch
Confidence            478999999999999988889999999999999999998877665 46799999999999 999999 999999988554


Q ss_pred             -hhHHHHHHHHHcCCCCCCEEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHH
Q 048013           80 -PLSVGVHACRRANIGPETNVLIMGS-GPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAE  156 (216)
Q Consensus        80 -~~~~a~~~l~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  156 (216)
                       ++.|+|++++..+++++++|||+|+ |++|++++|+++.. |+ +|+++++++++++.++++|++.++++.+  .++.+
T Consensus       154 ~~~~ta~~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~  230 (347)
T 1jvb_A          154 CSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRAGADYVINASM--QDPLA  230 (347)
T ss_dssp             THHHHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHHTCSEEEETTT--SCHHH
T ss_pred             hhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHhCCCEEecCCC--ccHHH
Confidence             6778999998888999999999997 49999999999999 99 5999999999999999999998887543  45555


Q ss_pred             HHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC-CCCcccchhhhh
Q 048013          157 EVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-REMTVPLTPAAA  214 (216)
Q Consensus       157 ~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~  214 (216)
                      .+.++.  ...++|++||++|....++.++++|+++|+++.+|... .. ++++..++.
T Consensus       231 ~~~~~~--~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~-~~~~~~~~~  286 (347)
T 1jvb_A          231 EIRRIT--ESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADL-HYHAPLITL  286 (347)
T ss_dssp             HHHHHT--TTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCC-CCCHHHHHH
T ss_pred             HHHHHh--cCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCC-CCCHHHHHh
Confidence            555542  21489999999999668899999999999999999765 44 566555443

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=6.3e-35  Score=240.71  Aligned_cols=203  Identities=25%  Similarity=0.365  Sum_probs=169.6

Q ss_pred             CCCCCCC-CCCCCCEEEEcC-CcCCCCCcchhCCCCCCCCCC-CCC------CCCCCCCccceeEEecCCceEECCCCCC
Q 048013            1 KVGSEVK-TLVPGDRVALEP-GISCWQCDYCKGGRYNLCPES-KGL------GSPPVHGCLANQVVHPADLCFKLPDNVS   71 (216)
Q Consensus         1 ~vG~~v~-~~~~Gd~V~~~~-~~~~~~c~~~~~~~~~~~~~~-~~~------~~~~~~g~~~~~~~~~~~~~~~ip~~~~   71 (216)
                      ++|++|+ +|++||||++.+ ..+|++|++|+.|++++|.+. ..+      |. ..+|+|+||+.+|++.++++|++++
T Consensus        76 ~vG~~v~~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~  154 (360)
T 1piw_A           76 KLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGY-VSQGGYANYVRVHEHFVVPIPENIP  154 (360)
T ss_dssp             EECTTCCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSC-BCCCSSBSEEEEEGGGEEECCTTSC
T ss_pred             EeCCCCCCCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCc-cCCCcceeEEEEchhheEECCCCCC
Confidence            4789999 999999997654 579999999999999999875 223      32 3569999999999999999999999


Q ss_pred             chhhhcch-hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCC
Q 048013           72 LEEGAMCE-PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTN  150 (216)
Q Consensus        72 ~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~  150 (216)
                      +++|+.++ ++.|||++++..+++++++|||+|+|++|++++|+|+.+|++ |++++++++++++++++|++.++++.+.
T Consensus       155 ~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~-Vi~~~~~~~~~~~~~~lGa~~v~~~~~~  233 (360)
T 1piw_A          155 SHLAAPLLCGGLTVYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAE-TYVISRSSRKREDAMKMGADHYIATLEE  233 (360)
T ss_dssp             HHHHGGGGTHHHHHHHHHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCE-EEEEESSSTTHHHHHHHTCSEEEEGGGT
T ss_pred             HHHhhhhhhhHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHcCCCEEEcCcCc
Confidence            99988665 778999999778899999999999999999999999999995 9999999999999999999998876432


Q ss_pred             cccHHHHHHHHHHHcCCCccEEEEcCCC--HHHHHHHHHHhhcCCEEEEeccCCCCC-cccchhhhh
Q 048013          151 LQDIAEEVEKIQKAMGTGIDVSFDCAGF--NKTMSTALSATRAGGKVCLVGMGHREM-TVPLTPAAA  214 (216)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~d~vi~~~g~--~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~  214 (216)
                       .++.+   ++    ..++|++||++|.  ...++.++++|+++|+++.+|.... . ++++..++.
T Consensus       234 -~~~~~---~~----~~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~  291 (360)
T 1piw_A          234 -GDWGE---KY----FDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQ-HEMLSLKPYGL  291 (360)
T ss_dssp             -SCHHH---HS----CSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCS-SCCEEECGGGC
T ss_pred             -hHHHH---Hh----hcCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEecCCCC-ccccCHHHHHh
Confidence             13322   22    1489999999998  6677889999999999999997665 4 455555443

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=1.3e-33  Score=231.69  Aligned_cols=210  Identities=26%  Similarity=0.458  Sum_probs=184.5

Q ss_pred             CCCCCCCCCCCCCEEEEcCC-cCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch
Q 048013            1 KVGSEVKTLVPGDRVALEPG-ISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~-~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~   79 (216)
                      ++|++|+.|++||||++.+. ..|+.|.+|..+..+.|......+. ..+|+|+||+.+|++.++++|+++++++|+.++
T Consensus        68 ~vG~~V~~~~~GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~G~~ae~~~~~~~~~~~iP~~~~~~~aa~l~  146 (348)
T 4eez_A           68 EIGADVSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGY-SVDGGMAEEAIVVADYAVKVPDGLDPIEASSIT  146 (348)
T ss_dssp             EECTTCCSCCTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTT-TBCCSSBSEEEEEGGGSCBCCTTSCHHHHHHHH
T ss_pred             EECceeeecccCCeEeecccccccCccccccCCccccccccccccc-ccCCcceeeccccccceeecCCCCCHHHHhhcc
Confidence            47999999999999988764 5788999999999999998877766 578999999999999999999999999998765


Q ss_pred             -hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           80 -PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        80 -~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                       ++.|+|++++..+++++++|||+|+|++|.+++|+++.++..+|++++++++|+++++++|++.++++.  ++++.+.+
T Consensus       147 ~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~--~~~~~~~v  224 (348)
T 4eez_A          147 CAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSG--DVNPVDEI  224 (348)
T ss_dssp             HHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC---CCCHHHHH
T ss_pred             cceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCC--CCCHHHHh
Confidence             677899999988999999999999999999999999987555799999999999999999999999864  35777777


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhhc
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAS  215 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~  215 (216)
                      .++  +.+.++|.+++++++...+..++++++++|+++.+|......++++..+++|
T Consensus       225 ~~~--t~g~g~d~~~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~  279 (348)
T 4eez_A          225 KKI--TGGLGVQSAIVCAVARIAFEQAVASLKPMGKMVAVAVPNTEMTLSVPTVVFD  279 (348)
T ss_dssp             HHH--TTSSCEEEEEECCSCHHHHHHHHHTEEEEEEEEECCCCSCEEEECHHHHHHS
T ss_pred             hhh--cCCCCceEEEEeccCcchhheeheeecCCceEEEEeccCCCCccCHHHHHhC
Confidence            766  4678999999999998889999999999999999998777677777776654

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=1.2e-33  Score=232.83  Aligned_cols=200  Identities=22%  Similarity=0.336  Sum_probs=165.3

Q ss_pred             CCCCCCCCCCCCCEEEEcCC-cCCCCCcchhCCCCCCCCCCCCCC------CCCCCCccceeEEecCCceEECCCCCCch
Q 048013            1 KVGSEVKTLVPGDRVALEPG-ISCWQCDYCKGGRYNLCPESKGLG------SPPVHGCLANQVVHPADLCFKLPDNVSLE   73 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~-~~~~~c~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~ip~~~~~~   73 (216)
                      ++|++|++|++||||++.+. .+|++|++|+.|++++|.+.....      ....+|+|+||+.+|++.++++|++++++
T Consensus        77 ~vG~~v~~~~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~  156 (357)
T 2cf5_A           77 EVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVE  156 (357)
T ss_dssp             EECSSCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCTTSCBCCCSSBSCEEEEGGGEEECCSSCCHH
T ss_pred             EECCCCCCCCCCCEEEEcCCCCCCCCChHHhCcCcccCCCccccccccccCCCCCCCccccEEEechhhEEECcCCCCHH
Confidence            47899999999999988654 589999999999999996542210      01256999999999999999999999999


Q ss_pred             hhhcch-hhHHHHHHHHHcCCC-CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-HcCCCEEEeCCCC
Q 048013           74 EGAMCE-PLSVGVHACRRANIG-PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KLGADNIVKVSTN  150 (216)
Q Consensus        74 ~aa~~~-~~~~a~~~l~~~~~~-~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~g~~~~~~~~~~  150 (216)
                      +++.++ ++.|+|++++..+++ ++++|||+|+|++|++++|+|+.+|+ +|+++++++++++.++ ++|++.++++++ 
T Consensus       157 ~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~-  234 (357)
T 2cf5_A          157 QAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLGADDYVIGSD-  234 (357)
T ss_dssp             HHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSCCSCEEETTC-
T ss_pred             HhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcCCceeecccc-
Confidence            988665 678999999888888 99999999999999999999999999 5999999999998887 899998887542 


Q ss_pred             cccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCc-ccch
Q 048013          151 LQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMT-VPLT  210 (216)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~-~~~~  210 (216)
                       .   +.++++   . .++|++||++|.+..++.++++++++|+++.+|....... ++..
T Consensus       235 -~---~~~~~~---~-~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~  287 (357)
T 2cf5_A          235 -Q---AKMSEL---A-DSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPL  287 (357)
T ss_dssp             -H---HHHHHS---T-TTEEEEEECCCSCCCSHHHHTTEEEEEEEEECSCCSSCCCCCHHH
T ss_pred             -H---HHHHHh---c-CCCCEEEECCCChHHHHHHHHHhccCCEEEEeCCCCCCccccCHH
Confidence             1   233332   2 3799999999985567889999999999999997654433 4433

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=3.7e-33  Score=230.56  Aligned_cols=204  Identities=24%  Similarity=0.377  Sum_probs=167.7

Q ss_pred             CCCCCCCCCCCCCEEEEcCC-cCCCCCcchhCCCCCCCCCCCCC--C----CCCCCCccceeEEecCCceEECCCCCCch
Q 048013            1 KVGSEVKTLVPGDRVALEPG-ISCWQCDYCKGGRYNLCPESKGL--G----SPPVHGCLANQVVHPADLCFKLPDNVSLE   73 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~-~~~~~c~~~~~~~~~~~~~~~~~--~----~~~~~g~~~~~~~~~~~~~~~ip~~~~~~   73 (216)
                      ++|++|++|++||||++.+. .+|++|.+|+.|++++|.+....  +    .....|+|+||+.+|++.++++|++++++
T Consensus        84 ~vG~~V~~~~vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~  163 (366)
T 1yqd_A           84 EVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLD  163 (366)
T ss_dssp             EECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEESSSSBCTTSCBCCCSSBSEEEEEGGGCEECCTTSCTT
T ss_pred             EECCCCCcCCCCCEEEEcCCcCCCCCChhhhCcCcccCCcccccccccccCCCcCCCccccEEEEchhhEEECCCCCCHH
Confidence            47899999999999998654 58999999999999999654321  1    01256999999999999999999999999


Q ss_pred             hhhcch-hhHHHHHHHHHcCCC-CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-HcCCCEEEeCCCC
Q 048013           74 EGAMCE-PLSVGVHACRRANIG-PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KLGADNIVKVSTN  150 (216)
Q Consensus        74 ~aa~~~-~~~~a~~~l~~~~~~-~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~g~~~~~~~~~~  150 (216)
                      +|+.+. ++.|+|++++..+++ ++++|||+|+|++|++++|+|+.+|+ +|+++++++++++.++ ++|++.++++.+ 
T Consensus       164 ~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~-  241 (366)
T 1yqd_A          164 GGAPLLCAGITVYSPLKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKNFGADSFLVSRD-  241 (366)
T ss_dssp             TTGGGGTHHHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHTSCCSEEEETTC-
T ss_pred             HhhhhhhhHHHHHHHHHhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCceEEeccC-
Confidence            988665 778999999877888 99999999999999999999999999 5999999999988876 899998887542 


Q ss_pred             cccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhh
Q 048013          151 LQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAA  214 (216)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  214 (216)
                       .   +.++++   . .++|++||++|....++.++++|+++|+++.+|......+++...++.
T Consensus       242 -~---~~~~~~---~-~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~  297 (366)
T 1yqd_A          242 -Q---EQMQAA---A-GTLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEKPLELPAFSLIA  297 (366)
T ss_dssp             -H---HHHHHT---T-TCEEEEEECCSSCCCSHHHHHHEEEEEEEEECCCCSSCEEECHHHHHT
T ss_pred             -H---HHHHHh---h-CCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEccCCCCCCcCHHHHHh
Confidence             1   233333   2 379999999998556789999999999999999766555555554443

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=7.8e-33  Score=234.71  Aligned_cols=209  Identities=22%  Similarity=0.223  Sum_probs=175.4

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-   79 (216)
                      ++|++|++|++||||++.+. .|..|..|..+.++.|.+...+|....+|+|+||+++|++.++++|+++++++|+.++ 
T Consensus       131 ~vG~~v~~~~vGdrV~~~~~-~c~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~  209 (456)
T 3krt_A          131 RTGPGVNAWQAGDEVVAHCL-SVELESSDGHNDTMLDPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGL  209 (456)
T ss_dssp             EECTTCCSCCTTCEEEECCE-ECCCCSGGGTTSGGGCTTCEETTTTSSSCSSBSEEEEEGGGEEECCTTSCHHHHHSSHH
T ss_pred             EECCCCCCCCCCCEEEEeCC-cccccccccccccccCccccccccCCCCCcccceEEechHHeeECCCCCCHHHHHHhhh
Confidence            47899999999999998654 6888999999999999999888875556999999999999999999999999999765 


Q ss_pred             hhHHHHHHHHH---cCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcc---
Q 048013           80 PLSVGVHACRR---ANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQ---  152 (216)
Q Consensus        80 ~~~~a~~~l~~---~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~---  152 (216)
                      ++.|+|+++..   .+++++++|||+|+ |++|++++|+|+.+|++ +++++++++++++++++|++.++++...+.   
T Consensus       210 ~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~-vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~  288 (456)
T 3krt_A          210 VNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGAN-PICVVSSPQKAEICRAMGAEAIIDRNAEGYRFW  288 (456)
T ss_dssp             HHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHTCCEEEETTTTTCCSE
T ss_pred             HHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCe-EEEEECCHHHHHHHHhhCCcEEEecCcCccccc
Confidence            78899999843   68999999999997 99999999999999995 888889999999999999999988654221   


Q ss_pred             ------------cHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCC-Ccccchhhhh
Q 048013          153 ------------DIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHRE-MTVPLTPAAA  214 (216)
Q Consensus       153 ------------~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~  214 (216)
                                  .+.+.++++  +.+.++|++||++|+ ..+..++++++++|+++.+|..... .+++...+++
T Consensus       289 ~~~~~~~~~~~~~~~~~i~~~--t~g~g~Dvvid~~G~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~  360 (456)
T 3krt_A          289 KDENTQDPKEWKRFGKRIREL--TGGEDIDIVFEHPGR-ETFGASVFVTRKGGTITTCASTSGYMHEYDNRYLWM  360 (456)
T ss_dssp             EETTEECHHHHHHHHHHHHHH--HTSCCEEEEEECSCH-HHHHHHHHHEEEEEEEEESCCTTCSEEEEEHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHHH--hCCCCCcEEEEcCCc-hhHHHHHHHhhCCcEEEEEecCCCcccccCHHHHHh
Confidence                        122344443  356799999999999 8889999999999999999976542 4555554443

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=2.4e-33  Score=231.77  Aligned_cols=194  Identities=18%  Similarity=0.346  Sum_probs=166.3

Q ss_pred             CCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCC--CCCCCCCccceeEEecCCceEECCCCCCchhhhcchhhHHH
Q 048013            7 KTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGL--GSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVG   84 (216)
Q Consensus         7 ~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~a   84 (216)
                      ++|++||||++.+..+|++|++|+.|++++|.+...+  |....+|+|+||+.+|++.++++|++++ ++|++..+++|+
T Consensus        77 ~~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~-~~Aal~~~~~ta  155 (366)
T 2cdc_A           77 HGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYLVKIPKSIE-DIGILAQPLADI  155 (366)
T ss_dssp             SSCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCEEETTBEECCSCBSEEEECGGGEEEECGGGT-TTGGGHHHHHHH
T ss_pred             CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCcccCCccCCCCceeEEEEechHHeEECcCCcc-hhhhhcCcHHHH
Confidence            6799999999999999999999999999999987665  4411469999999999999999999999 888877799999


Q ss_pred             HHHHH-----HcCCC--C-------CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh---HHHHHHHHcCCCEEEeC
Q 048013           85 VHACR-----RANIG--P-------ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD---YRLSVAKKLGADNIVKV  147 (216)
Q Consensus        85 ~~~l~-----~~~~~--~-------~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~---~~~~~~~~~g~~~~~~~  147 (216)
                      |++++     ..+++  +       +++|||+|+|++|++++|+++.+|+ +|+++++++   ++.++++++|++.+ + 
T Consensus       156 ~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~ga~~v-~-  232 (366)
T 2cdc_A          156 EKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEETKTNYY-N-  232 (366)
T ss_dssp             HHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHHTCEEE-E-
T ss_pred             HHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHhCCcee-c-
Confidence            99997     77888  8       9999999999999999999999999 699999998   88899999999877 5 


Q ss_pred             CCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHH-HHHHHHhhcCCEEEEeccCCCC-Ccccchh
Q 048013          148 STNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTM-STALSATRAGGKVCLVGMGHRE-MTVPLTP  211 (216)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~-~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~  211 (216)
                      .+   ++.+.+.+ .  . .++|++||++|....+ +.++++|+++|+++.+|..... .++++..
T Consensus       233 ~~---~~~~~~~~-~--~-~~~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~  291 (366)
T 2cdc_A          233 SS---NGYDKLKD-S--V-GKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKT  291 (366)
T ss_dssp             CT---TCSHHHHH-H--H-CCEEEEEECCCCCTHHHHHHGGGEEEEEEEEECSCCCSCEEEEEHHH
T ss_pred             hH---HHHHHHHH-h--C-CCCCEEEECCCChHHHHHHHHHHHhcCCEEEEEecCCCCccccChhh
Confidence            32   44444544 2  3 6899999999986677 8999999999999999976654 4555554

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=9.1e-33  Score=233.81  Aligned_cols=211  Identities=21%  Similarity=0.215  Sum_probs=171.3

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-   79 (216)
                      ++|++|++|++||||++.+...|+.|+ |..+.++.|.+...+|.....|+|+||+.+|++.++++|+++++++|+.++ 
T Consensus       123 ~vG~~V~~~~vGDrV~~~~~~~~~~~~-~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~  201 (447)
T 4a0s_A          123 RTGIGVRRWKPGDHVIVHPAHVDEQEP-ATHGDGMLGTEQRAWGFETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPL  201 (447)
T ss_dssp             EECTTCCSCCTTCEEEECSEECCTTSG-GGGTCTTCSTTCEETTTTSSSCSSBSEEEEEGGGEEECCTTSCHHHHHTSHH
T ss_pred             EECCCCCCCCCCCEEEEecCcCcCccc-ccccccccccccccccccCCCCceeeeeecCHHHcEECCCCCCHHHHHHhHH
Confidence            479999999999999999888888777 445788999998888875456999999999999999999999999999765 


Q ss_pred             hhHHHHHHHH---HcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCc----
Q 048013           80 PLSVGVHACR---RANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNL----  151 (216)
Q Consensus        80 ~~~~a~~~l~---~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~----  151 (216)
                      ++.+||+++.   ..+++++++|||+|+ |++|++++|+|+.+|++ ++++++++++++.++++|++.++++.+.+    
T Consensus       202 ~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~-vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~  280 (447)
T 4a0s_A          202 CAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGI-PVAVVSSAQKEAAVRALGCDLVINRAELGITDD  280 (447)
T ss_dssp             HHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTT
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHhcCCCEEEeccccccccc
Confidence            6789999983   378999999999997 99999999999999995 88888999999999999999887643211    


Q ss_pred             ---------ccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCC-Ccccchhhhh
Q 048013          152 ---------QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHRE-MTVPLTPAAA  214 (216)
Q Consensus       152 ---------~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~  214 (216)
                               .++.+...++.+..+.++|++||++|. ..++.++++++++|+++.+|..... .+++...++.
T Consensus       281 ~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~  352 (447)
T 4a0s_A          281 IADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGR-VTFGLSVIVARRGGTVVTCGSSSGYLHTFDNRYLWM  352 (447)
T ss_dssp             GGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSCH-HHHHHHHHHSCTTCEEEESCCTTCSEEEEEHHHHHH
T ss_pred             ccccccccchhhhHHHHHHHHHhCCCceEEEECCCc-hHHHHHHHHHhcCCEEEEEecCCCcccccCHHHHHh
Confidence                     001111223333337789999999998 6789999999999999999976542 3455544443

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=3.3e-32  Score=224.67  Aligned_cols=201  Identities=23%  Similarity=0.314  Sum_probs=169.0

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCC---C-CCCCCCCCccceeEEecCCceEECCCCCCchhhh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESK---G-LGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGA   76 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~---~-~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa   76 (216)
                      ++|++|++|++||||+..+..      .|+.|. +.|.+..   . +|. ..+|+|+||+.+|++.++++|+++++++|+
T Consensus        97 ~vG~~v~~~~vGDrV~~~~~~------~c~~g~-~~c~~~~~~~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~~~~aa  168 (363)
T 3uog_A           97 AVGKSVTRFRPGDRVISTFAP------GWLDGL-RPGTGRTPAYETLGG-AHPGVLSEYVVLPEGWFVAAPKSLDAAEAS  168 (363)
T ss_dssp             EECTTCCSCCTTCEEEECSST------TCCSSS-CCSCSSCCCCCCTTT-TSCCCCBSEEEEEGGGEEECCTTSCHHHHH
T ss_pred             EECCCCCCCCCCCEEEEeccc------cccccc-cccccccccccccCc-CCCCcceeEEEechHHeEECCCCCCHHHHh
Confidence            478999999999999987654      566777 8887422   2 333 467999999999999999999999999999


Q ss_pred             cch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccH
Q 048013           77 MCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDI  154 (216)
Q Consensus        77 ~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  154 (216)
                      .++ ++.|+|+++ +..+++++++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|++.+++  ...+++
T Consensus       169 ~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~--~~~~~~  245 (363)
T 3uog_A          169 TLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGADHGIN--RLEEDW  245 (363)
T ss_dssp             TTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSEEEE--TTTSCH
T ss_pred             hcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHcCCCEEEc--CCcccH
Confidence            765 778999999 67889999999999999999999999999999 5999999999999999999999887  333577


Q ss_pred             HHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCC-Ccccchhhhhc
Q 048013          155 AEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHRE-MTVPLTPAAAS  215 (216)
Q Consensus       155 ~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~  215 (216)
                      .+.+++++  .++++|++||++|+ ..+..++++|+++|+++.+|..... .++++..++.|
T Consensus       246 ~~~v~~~~--~g~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~  304 (363)
T 3uog_A          246 VERVYALT--GDRGADHILEIAGG-AGLGQSLKAVAPDGRISVIGVLEGFEVSGPVGPLLLK  304 (363)
T ss_dssp             HHHHHHHH--TTCCEEEEEEETTS-SCHHHHHHHEEEEEEEEEECCCSSCEECCBTTHHHHT
T ss_pred             HHHHHHHh--CCCCceEEEECCCh-HHHHHHHHHhhcCCEEEEEecCCCcccCcCHHHHHhC
Confidence            77777763  56789999999997 7789999999999999999976653 56666665543

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=99.96  E-value=5.9e-29  Score=202.32  Aligned_cols=181  Identities=28%  Similarity=0.302  Sum_probs=153.0

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-   79 (216)
                      ++|++|++|++||||+...                           ..+|+|+||+.+|++.++++|+++++++|+.+. 
T Consensus        71 ~vG~~v~~~~~GdrV~~~~---------------------------~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~  123 (325)
T 3jyn_A           71 AVGDEVTRFKVGDRVAYGT---------------------------GPLGAYSEVHVLPEANLVKLADSVSFEQAAALML  123 (325)
T ss_dssp             EECTTCCSCCTTCEEEESS---------------------------SSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHH
T ss_pred             EECCCCCCCCCCCEEEEec---------------------------CCCccccceEEecHHHeEECCCCCCHHHHhhhhh
Confidence            4789999999999998742                           246999999999999999999999999999554 


Q ss_pred             hhHHHHHHHH-HcCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           80 PLSVGVHACR-RANIGPETNVLIMG-SGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        80 ~~~~a~~~l~-~~~~~~~~~vlv~G-ag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                      ...++|+++. ..+++++++|||+| +|++|++++|+++..|+ +|+++++++++++.++++|++.++++.  +.++.+.
T Consensus       124 ~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~--~~~~~~~  200 (325)
T 3jyn_A          124 KGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETIDYS--HEDVAKR  200 (325)
T ss_dssp             HHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETT--TSCHHHH
T ss_pred             hHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEeCC--CccHHHH
Confidence            6678888884 57899999999999 59999999999999999 599999999999999999999988864  3566666


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCC-cccchhhhh
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREM-TVPLTPAAA  214 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~  214 (216)
                      +.++  +.+.++|++||++|. ..+..++++++++|+++.+|...... ++++..++.
T Consensus       201 ~~~~--~~~~g~Dvvid~~g~-~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~  255 (325)
T 3jyn_A          201 VLEL--TDGKKCPVVYDGVGQ-DTWLTSLDSVAPRGLVVSFGNASGPVSGVNLGILAQ  255 (325)
T ss_dssp             HHHH--TTTCCEEEEEESSCG-GGHHHHHTTEEEEEEEEECCCTTCCCCSCCTHHHHH
T ss_pred             HHHH--hCCCCceEEEECCCh-HHHHHHHHHhcCCCEEEEEecCCCCCCCCCHHHHhh
Confidence            6665  356789999999999 77889999999999999999766543 556555443

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=99.96  E-value=5.2e-29  Score=204.00  Aligned_cols=177  Identities=22%  Similarity=0.336  Sum_probs=144.8

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhh-cch
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGA-MCE   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa-~~~   79 (216)
                      ++|++|+ |++||||+..                            ...|+|+||+.+|++.++++|+++++++|+ +..
T Consensus        92 ~vG~~v~-~~vGDrV~~~----------------------------~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~  142 (342)
T 4eye_A           92 SAPEGSG-IKPGDRVMAF----------------------------NFIGGYAERVAVAPSNILPTPPQLDDAEAVALIA  142 (342)
T ss_dssp             ECCTTSS-CCTTCEEEEE----------------------------CSSCCSBSEEEECGGGEEECCTTSCHHHHHHHTT
T ss_pred             EECCCCC-CCCCCEEEEe----------------------------cCCCcceEEEEEcHHHeEECCCCCCHHHHHHhhh
Confidence            4789998 9999999875                            245999999999999999999999999997 455


Q ss_pred             hhHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           80 PLSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        80 ~~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                      ++.|+|+++ +..+++++++|||+|+ |++|++++|+++.+|+ +|+++++++++++.++++|++.+++++   +++.+.
T Consensus       143 ~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~v~~~~---~~~~~~  218 (342)
T 4eye_A          143 NYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGADIVLPLE---EGWAKA  218 (342)
T ss_dssp             HHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEESS---TTHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEecCc---hhHHHH
Confidence            899999999 6788999999999997 9999999999999999 599999999999999999999988754   466666


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCC-Ccccchhhh
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHRE-MTVPLTPAA  213 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~  213 (216)
                      +.++  +.+.++|++||++|+ ..+..++++++++|+++.+|..... ..+++..++
T Consensus       219 v~~~--~~~~g~Dvvid~~g~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~  272 (342)
T 4eye_A          219 VREA--TGGAGVDMVVDPIGG-PAFDDAVRTLASEGRLLVVGFAAGGIPTIKVNRLL  272 (342)
T ss_dssp             HHHH--TTTSCEEEEEESCC---CHHHHHHTEEEEEEEEEC----------CCCCGG
T ss_pred             HHHH--hCCCCceEEEECCch-hHHHHHHHhhcCCCEEEEEEccCCCCCccCHHHHh
Confidence            6665  345689999999998 6788999999999999999975543 344444433

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=99.96  E-value=7.7e-29  Score=203.80  Aligned_cols=179  Identities=22%  Similarity=0.311  Sum_probs=153.6

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-h
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-E   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~   79 (216)
                      ++|++|++|++||||+..                            ...|+|+||+.+|++.++++|+++++++|+.+ .
T Consensus        99 ~vG~~v~~~~vGdrV~~~----------------------------~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~  150 (353)
T 4dup_A           99 GVGPGVSGYAVGDKVCGL----------------------------ANGGAYAEYCLLPAGQILPFPKGYDAVKAAALPE  150 (353)
T ss_dssp             EECTTCCSCCTTCEEEEE----------------------------CSSCCSBSEEEEEGGGEEECCTTCCHHHHHTSHH
T ss_pred             EECCCCCCCCCCCEEEEe----------------------------cCCCceeeEEEEcHHHcEeCCCCCCHHHHhhhhh
Confidence            478999999999999864                            24599999999999999999999999999855 5


Q ss_pred             hhHHHHHHH-HHcCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           80 PLSVGVHAC-RRANIGPETNVLIMG-SGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        80 ~~~~a~~~l-~~~~~~~~~~vlv~G-ag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                      ++.|+|+++ +..+++++++|||+| +|++|++++|+++..|+ +|+++++++++++.++++|++.++++.  ++++.+.
T Consensus       151 ~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~--~~~~~~~  227 (353)
T 4dup_A          151 TFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERLGAKRGINYR--SEDFAAV  227 (353)
T ss_dssp             HHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETT--TSCHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEeCC--chHHHHH
Confidence            889999999 678899999999996 59999999999999999 599999999999999999999988864  3566666


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCC-Cc-ccchhhhh
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHRE-MT-VPLTPAAA  214 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~-~~~~~~~~  214 (216)
                      +.++.   ++++|++||++|+ ..++.++++|+++|+++.+|..... .. +++..++.
T Consensus       228 ~~~~~---~~g~Dvvid~~g~-~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~  282 (353)
T 4dup_A          228 IKAET---GQGVDIILDMIGA-AYFERNIASLAKDGCLSIIAFLGGAVAEKVNLSPIMV  282 (353)
T ss_dssp             HHHHH---SSCEEEEEESCCG-GGHHHHHHTEEEEEEEEECCCTTCSEEEEEECHHHHH
T ss_pred             HHHHh---CCCceEEEECCCH-HHHHHHHHHhccCCEEEEEEecCCCcccCCCHHHHHh
Confidence            66653   7789999999998 6778999999999999999976543 23 66655543

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=99.96  E-value=2.5e-28  Score=200.20  Aligned_cols=178  Identities=19%  Similarity=0.252  Sum_probs=148.8

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-   79 (216)
                      ++|++|++|++||||+....                         ...+|+|+||+.+|++.++++|+++++++|+.++ 
T Consensus        73 ~vG~~v~~~~~GdrV~~~~~-------------------------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~  127 (346)
T 3fbg_A           73 SVGNEVTMFNQGDIVYYSGS-------------------------PDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPL  127 (346)
T ss_dssp             EECTTCCSCCTTCEEEECCC-------------------------TTSCCSSBSEEEEEGGGEEECCSSSCHHHHTTSHH
T ss_pred             EeCCCCCcCCCCCEEEEcCC-------------------------CCCCcceeEEEEEChHHeEECCCCCCHHHhhhcch
Confidence            47899999999999997421                         1246999999999999999999999999999775 


Q ss_pred             hhHHHHHHH-HHcCCC------CCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCc
Q 048013           80 PLSVGVHAC-RRANIG------PETNVLIMG-SGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNL  151 (216)
Q Consensus        80 ~~~~a~~~l-~~~~~~------~~~~vlv~G-ag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~  151 (216)
                      ++.|||+++ +..+++      ++++|||+| +|++|++++|+|+.+|+ +|++++++++++++++++|++.+++++   
T Consensus       128 ~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~---  203 (346)
T 3fbg_A          128 TGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKMGADIVLNHK---  203 (346)
T ss_dssp             HHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHHTCSEEECTT---
T ss_pred             hHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEECC---
Confidence            556899998 567787      899999995 69999999999999999 599999999999999999999988764   


Q ss_pred             ccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhh
Q 048013          152 QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPA  212 (216)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  212 (216)
                      +++.+.++++   .++++|++||++|++..++.++++|+++|+++.+|....  ++++..+
T Consensus       204 ~~~~~~~~~~---~~~g~Dvv~d~~g~~~~~~~~~~~l~~~G~iv~~~~~~~--~~~~~~~  259 (346)
T 3fbg_A          204 ESLLNQFKTQ---GIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAFEN--DQDLNAL  259 (346)
T ss_dssp             SCHHHHHHHH---TCCCEEEEEESSCHHHHHHHHHHHEEEEEEEEESSCCSS--CBCGGGG
T ss_pred             ccHHHHHHHh---CCCCccEEEECCCchHHHHHHHHHhccCCEEEEECCCCC--CCccccc
Confidence            2555555553   567899999999997778999999999999999885332  3444443

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=99.96  E-value=6.3e-28  Score=199.59  Aligned_cols=175  Identities=22%  Similarity=0.271  Sum_probs=146.1

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-   79 (216)
                      ++|++|++|++||||+..       |..|..+.             ..+|+|+||+.+|++.++++|+++++++|+.++ 
T Consensus        76 ~vG~~v~~~~~GdrV~~~-------~~~~~~~~-------------~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~  135 (371)
T 3gqv_A           76 AVGSDVTHIQVGDRVYGA-------QNEMCPRT-------------PDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPA  135 (371)
T ss_dssp             EECTTCCSCCTTCEEEEE-------CCTTCTTC-------------TTCCSSBSEEECCTTCEEECCTTCCHHHHHTSHH
T ss_pred             EeCCCCCCCCCCCEEEEe-------ccCCCCCC-------------CCCCcCcCeEEEchhheEECCCCCCHHHHhhhhh
Confidence            478999999999999754       44444432             356999999999999999999999999999775 


Q ss_pred             hhHHHHHHH-HH-cCC-----------CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEE
Q 048013           80 PLSVGVHAC-RR-ANI-----------GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIV  145 (216)
Q Consensus        80 ~~~~a~~~l-~~-~~~-----------~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~  145 (216)
                      .+.|+|+++ +. .++           +++++|||+|+ |++|++++|+|+.+|++ |+++. +++++++++++|++.++
T Consensus       136 ~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~-Vi~~~-~~~~~~~~~~lGa~~vi  213 (371)
T 3gqv_A          136 GISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYI-PIATC-SPHNFDLAKSRGAEEVF  213 (371)
T ss_dssp             HHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEE-CGGGHHHHHHTTCSEEE
T ss_pred             hHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCCE-EEEEe-CHHHHHHHHHcCCcEEE
Confidence            567899998 55 442           89999999997 89999999999999994 77775 78899999999999998


Q ss_pred             eCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHh-hcCCEEEEeccCC
Q 048013          146 KVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSAT-RAGGKVCLVGMGH  202 (216)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l-~~~G~~v~~g~~~  202 (216)
                      ++..  +++.+.++++   .++++|++||++|++..+..++++| +++|+++.+|...
T Consensus       214 ~~~~--~~~~~~v~~~---t~g~~d~v~d~~g~~~~~~~~~~~l~~~~G~iv~~g~~~  266 (371)
T 3gqv_A          214 DYRA--PNLAQTIRTY---TKNNLRYALDCITNVESTTFCFAAIGRAGGHYVSLNPFP  266 (371)
T ss_dssp             ETTS--TTHHHHHHHH---TTTCCCEEEESSCSHHHHHHHHHHSCTTCEEEEESSCCC
T ss_pred             ECCC--chHHHHHHHH---ccCCccEEEECCCchHHHHHHHHHhhcCCCEEEEEecCc
Confidence            8643  5676667665   3446999999999988889999999 5999999999543

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=99.96  E-value=2.3e-28  Score=199.50  Aligned_cols=178  Identities=26%  Similarity=0.337  Sum_probs=150.8

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEec-CCceEECCCCCCchh---hh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHP-ADLCFKLPDNVSLEE---GA   76 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~ip~~~~~~~---aa   76 (216)
                      ++|++|++|++||||+..                             .+|+|+||+.+| ++.++++|+++++++   ++
T Consensus        77 ~vG~~v~~~~~GdrV~~~-----------------------------~~G~~aey~~v~~~~~~~~~P~~~~~~~~~~aa  127 (334)
T 3qwb_A           77 AKGKGVTNFEVGDQVAYI-----------------------------SNSTFAQYSKISSQGPVMKLPKGTSDEELKLYA  127 (334)
T ss_dssp             EECTTCCSCCTTCEEEEE-----------------------------CSSCSBSEEEEETTSSEEECCTTCCHHHHHHHH
T ss_pred             EECCCCCCCCCCCEEEEe-----------------------------eCCcceEEEEecCcceEEECCCCCCHHHhhhhh
Confidence            478999999999999975                             459999999999 999999999999999   55


Q ss_pred             c-chhhHHHHHHHH-HcCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCccc
Q 048013           77 M-CEPLSVGVHACR-RANIGPETNVLIMG-SGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQD  153 (216)
Q Consensus        77 ~-~~~~~~a~~~l~-~~~~~~~~~vlv~G-ag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  153 (216)
                      . .....++|+++. ..+++++++|||+| +|++|++++|+++..|+ +|+++++++++++.++++|++.++++.  +++
T Consensus       128 ~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~--~~~  204 (334)
T 3qwb_A          128 AGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKEYGAEYLINAS--KED  204 (334)
T ss_dssp             HHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETT--TSC
T ss_pred             hhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEEeCC--Cch
Confidence            3 346778999985 46899999999999 59999999999999999 599999999999999999999988864  356


Q ss_pred             HHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCC-Ccccchhhh
Q 048013          154 IAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHRE-MTVPLTPAA  213 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~  213 (216)
                      +.+.+.++  +.+.++|++||++|. ..++.++++|+++|+++.+|..... .+++...++
T Consensus       205 ~~~~~~~~--~~~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~  262 (334)
T 3qwb_A          205 ILRQVLKF--TNGKGVDASFDSVGK-DTFEISLAALKRKGVFVSFGNASGLIPPFSITRLS  262 (334)
T ss_dssp             HHHHHHHH--TTTSCEEEEEECCGG-GGHHHHHHHEEEEEEEEECCCTTCCCCCBCGGGGT
T ss_pred             HHHHHHHH--hCCCCceEEEECCCh-HHHHHHHHHhccCCEEEEEcCCCCCCCCcchhhhh
Confidence            66666665  346789999999998 7789999999999999999976543 245555443

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=99.96  E-value=4.3e-28  Score=200.06  Aligned_cols=168  Identities=21%  Similarity=0.285  Sum_probs=143.8

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-   79 (216)
                      ++|++|++|++||||+..+..                         ..+|+|+||+.+|++.++++|+++++++|+.++ 
T Consensus        95 ~vG~~v~~~~vGdrV~~~~~~-------------------------~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~  149 (363)
T 4dvj_A           95 AVGPDVTLFRPGDEVFYAGSI-------------------------IRPGTNAEFHLVDERIVGRKPKTLDWAEAAALPL  149 (363)
T ss_dssp             EECTTCCSCCTTCEEEECCCT-------------------------TSCCSCBSEEEEEGGGCEECCTTSCHHHHHTSHH
T ss_pred             EeCCCCCCCCCCCEEEEccCC-------------------------CCCccceEEEEeCHHHeeECCCCCCHHHHHhhhh
Confidence            478999999999999874211                         246999999999999999999999999999775 


Q ss_pred             hhHHHHHHH-HHcCCC-----CCCEEEEEc-CCHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCc
Q 048013           80 PLSVGVHAC-RRANIG-----PETNVLIMG-SGPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNL  151 (216)
Q Consensus        80 ~~~~a~~~l-~~~~~~-----~~~~vlv~G-ag~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~  151 (216)
                      .+.|||+++ +..+++     ++++|||+| +|++|++++|+|+.+ |+ +|++++++++++++++++|++.++++.   
T Consensus       150 ~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~~~~~~~~~lGad~vi~~~---  225 (363)
T 4dvj_A          150 TSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDL-TVIATASRPETQEWVKSLGAHHVIDHS---  225 (363)
T ss_dssp             HHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSHHHHHHHHHTTCSEEECTT---
T ss_pred             HHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCC---
Confidence            566899998 567777     899999999 699999999999985 77 599999999999999999999998764   


Q ss_pred             ccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEecc
Q 048013          152 QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      +++.+.++++   .++++|++||++|++..++.++++|+++|+++.+|.
T Consensus       226 ~~~~~~v~~~---~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~  271 (363)
T 4dvj_A          226 KPLAAEVAAL---GLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDD  271 (363)
T ss_dssp             SCHHHHHHTT---CSCCEEEEEECSCHHHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCHHHHHHHh---cCCCceEEEECCCchhhHHHHHHHhcCCCEEEEECC
Confidence            2455555443   567899999999987788999999999999999974

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=99.96  E-value=5.7e-28  Score=198.47  Aligned_cols=179  Identities=23%  Similarity=0.370  Sum_probs=150.3

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-   79 (216)
                      ++|++|++|++||||+..+                           ...|+|+||+.+|++.++++|+++++++|+.++ 
T Consensus       101 ~vG~~v~~~~vGdrV~~~~---------------------------~~~G~~aey~~v~~~~~~~~P~~l~~~~aA~l~~  153 (351)
T 1yb5_A          101 AVGDNASAFKKGDRVFTSS---------------------------TISGGYAEYALAADHTVYKLPEKLDFKQGAAIGI  153 (351)
T ss_dssp             EECTTCTTCCTTCEEEESC---------------------------CSSCSSBSEEEEEGGGEEECCTTSCHHHHTTTHH
T ss_pred             EECCCCCCCCCCCEEEEeC---------------------------CCCCcceeEEEECHHHeEECCCCCCHHHHHhhhh
Confidence            4789999999999998752                           135999999999999999999999999998665 


Q ss_pred             hhHHHHHHHH-HcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           80 PLSVGVHACR-RANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        80 ~~~~a~~~l~-~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                      ++.|||+++. ..+++++++|||+|+ |++|++++|+++..|+ +|+++++++++++.++++|++.++++.+  +++.+.
T Consensus       154 ~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~d~~~--~~~~~~  230 (351)
T 1yb5_A          154 PYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFNHRE--VNYIDK  230 (351)
T ss_dssp             HHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS--TTHHHH
T ss_pred             HHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHcCCCEEEeCCC--chHHHH
Confidence            8899999995 688999999999996 9999999999999999 5999999999999999999998887643  456555


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhh
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAA  213 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  213 (216)
                      +.+.  +.++++|++||++|+ ..+..++++++++|+++.+|... ..+++...++
T Consensus       231 ~~~~--~~~~~~D~vi~~~G~-~~~~~~~~~l~~~G~iv~~g~~~-~~~~~~~~~~  282 (351)
T 1yb5_A          231 IKKY--VGEKGIDIIIEMLAN-VNLSKDLSLLSHGGRVIVVGSRG-TIEINPRDTM  282 (351)
T ss_dssp             HHHH--HCTTCEEEEEESCHH-HHHHHHHHHEEEEEEEEECCCCS-CEEECTHHHH
T ss_pred             HHHH--cCCCCcEEEEECCCh-HHHHHHHHhccCCCEEEEEecCC-CCccCHHHHH
Confidence            6554  245689999999998 56788999999999999999643 3445544443

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=99.96  E-value=6.5e-28  Score=197.56  Aligned_cols=170  Identities=24%  Similarity=0.310  Sum_probs=144.8

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-   79 (216)
                      ++|++|++|++||||+....           +            ....+|+|+||+.+|++.++++|+++++++|+.++ 
T Consensus        77 ~vG~~v~~~~vGdrV~~~~~-----------g------------~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~  133 (343)
T 3gaz_A           77 AVGPEVDSFRVGDAVFGLTG-----------G------------VGGLQGTHAQFAAVDARLLASKPAALTMRQASVLPL  133 (343)
T ss_dssp             EECTTCCSCCTTCEEEEECC-----------S------------STTCCCSSBSEEEEEGGGEEECCTTSCHHHHHTSHH
T ss_pred             EECCCCCCCCCCCEEEEEeC-----------C------------CCCCCcceeeEEEecHHHeeeCCCCCCHHHHHHhhh
Confidence            47899999999999986311           1            01246999999999999999999999999999775 


Q ss_pred             hhHHHHHHH-HHcCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           80 PLSVGVHAC-RRANIGPETNVLIMG-SGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        80 ~~~~a~~~l-~~~~~~~~~~vlv~G-ag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                      ++.|+|+++ +..+++++++|||+| +|++|++++|+|+..|+ +|+++ .+++++++++++|++. ++   ..+++.+.
T Consensus       134 ~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~lGa~~-i~---~~~~~~~~  207 (343)
T 3gaz_A          134 VFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDLGATP-ID---ASREPEDY  207 (343)
T ss_dssp             HHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHHTSEE-EE---TTSCHHHH
T ss_pred             hHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHcCCCE-ec---cCCCHHHH
Confidence            567899999 788999999999999 59999999999999999 58888 8899999999999987 55   33566666


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +.++  +.+.++|++||++|+ ..+..++++|+++|+++.+|...
T Consensus       208 ~~~~--~~~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~g~~~  249 (343)
T 3gaz_A          208 AAEH--TAGQGFDLVYDTLGG-PVLDASFSAVKRFGHVVSCLGWG  249 (343)
T ss_dssp             HHHH--HTTSCEEEEEESSCT-HHHHHHHHHEEEEEEEEESCCCS
T ss_pred             HHHH--hcCCCceEEEECCCc-HHHHHHHHHHhcCCeEEEEcccC
Confidence            6665  356789999999998 77899999999999999998654

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=99.96  E-value=2.4e-28  Score=199.90  Aligned_cols=169  Identities=20%  Similarity=0.250  Sum_probs=145.1

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-   79 (216)
                      ++|++|++|++||||+..                            ..+|+|+||+.+|++.++++|+++++++|+.+. 
T Consensus        76 ~vG~~v~~~~vGdrV~~~----------------------------~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~l~~  127 (340)
T 3gms_A           76 NVGAFVSRELIGKRVLPL----------------------------RGEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYI  127 (340)
T ss_dssp             EECTTSCGGGTTCEEEEC----------------------------SSSCSSBSEEEEEGGGEEECCTTSCHHHHTTSSH
T ss_pred             EeCCCCCCCCCCCEEEec----------------------------CCCccceeEEEcCHHHeEECCCCCCHHHHhhhcc
Confidence            478999999999999864                            246999999999999999999999999999653 


Q ss_pred             hhHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           80 PLSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        80 ~~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                      ...++|+++ +..+++++++|||+|+ |++|++++|+++.+|+ +|+++++++++++.++++|++.++++.  +.++.+.
T Consensus       128 ~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~~~~~~~--~~~~~~~  204 (340)
T 3gms_A          128 NPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAYVIDTS--TAPLYET  204 (340)
T ss_dssp             HHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEETT--TSCHHHH
T ss_pred             hHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCcEEEeCC--cccHHHH
Confidence            666888887 6788999999999997 5999999999999999 599999999999999999999988854  3566666


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      +.++  +.+.++|++||++|. ......+++|+++|+++.+|....
T Consensus       205 ~~~~--~~~~g~Dvvid~~g~-~~~~~~~~~l~~~G~iv~~G~~~~  247 (340)
T 3gms_A          205 VMEL--TNGIGADAAIDSIGG-PDGNELAFSLRPNGHFLTIGLLSG  247 (340)
T ss_dssp             HHHH--TTTSCEEEEEESSCH-HHHHHHHHTEEEEEEEEECCCTTS
T ss_pred             HHHH--hCCCCCcEEEECCCC-hhHHHHHHHhcCCCEEEEEeecCC
Confidence            6665  356789999999998 445667799999999999997554

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=99.96  E-value=4.4e-28  Score=199.36  Aligned_cols=179  Identities=22%  Similarity=0.308  Sum_probs=149.6

Q ss_pred             CCCCCC-CCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-
Q 048013            1 KVGSEV-KTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-   78 (216)
Q Consensus         1 ~vG~~v-~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-   78 (216)
                      ++|++| ++|++||||+..                            ...|+|+||+.+|++.++++|+++++++|+.+ 
T Consensus        93 ~vG~~v~~~~~vGdrV~~~----------------------------~~~G~~aey~~v~~~~~~~iP~~ls~~~aa~l~  144 (354)
T 2j8z_A           93 ELGPGCQGHWKIGDTAMAL----------------------------LPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIP  144 (354)
T ss_dssp             EECSCC--CCCTTCEEEEE----------------------------CSSCCSBSEEEEEGGGEEECCTTCCHHHHTTSH
T ss_pred             EECCCcCCCCCCCCEEEEe----------------------------cCCCcceeEEEeCHHHcEECCCCCCHHHHHhcc
Confidence            478999 999999999874                            13589999999999999999999999998855 


Q ss_pred             hhhHHHHHHH-HHcCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHH
Q 048013           79 EPLSVGVHAC-RRANIGPETNVLIMG-SGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAE  156 (216)
Q Consensus        79 ~~~~~a~~~l-~~~~~~~~~~vlv~G-ag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  156 (216)
                      .++.|||+++ +..+++++++|||+| +|++|++++|+++..|+ +|+++++++++++.++++|++.++++..  .++.+
T Consensus       145 ~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~  221 (354)
T 2j8z_A          145 EAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKLGAAAGFNYKK--EDFSE  221 (354)
T ss_dssp             HHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSEEEETTT--SCHHH
T ss_pred             chHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCC--hHHHH
Confidence            4889999999 678899999999999 59999999999999999 5999999999999999999998887643  45655


Q ss_pred             HHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC-CCcccc-hhhh
Q 048013          157 EVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR-EMTVPL-TPAA  213 (216)
Q Consensus       157 ~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~-~~~~  213 (216)
                      .+.+.  +.+.++|++||++|+ ..+..++++|+++|+++.+|.... ..++++ ..++
T Consensus       222 ~~~~~--~~~~~~d~vi~~~G~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~  277 (354)
T 2j8z_A          222 ATLKF--TKGAGVNLILDCIGG-SYWEKNVNCLALDGRWVLYGLMGGGDINGPLFSKLL  277 (354)
T ss_dssp             HHHHH--TTTSCEEEEEESSCG-GGHHHHHHHEEEEEEEEECCCTTCSCCCSCHHHHHH
T ss_pred             HHHHH--hcCCCceEEEECCCc-hHHHHHHHhccCCCEEEEEeccCCCccCCChhHHHH
Confidence            55554  245689999999999 477889999999999999997554 245555 4443

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=99.96  E-value=5.8e-28  Score=199.29  Aligned_cols=184  Identities=18%  Similarity=0.256  Sum_probs=146.4

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCC-----------C
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPD-----------N   69 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~-----------~   69 (216)
                      ++|++|++|++||||+..+                           ...|+|+||+.+|++.++++|+           +
T Consensus        86 ~vG~~v~~~~vGdrV~~~~---------------------------~~~G~~aey~~v~~~~~~~~P~~~~~~~~~~~~~  138 (364)
T 1gu7_A           86 KVGSNVSSLEAGDWVIPSH---------------------------VNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNG  138 (364)
T ss_dssp             EECTTCCSCCTTCEEEESS---------------------------SCCCCSBSEEEEEGGGEEEECCHHHHHHTTCSCC
T ss_pred             EeCCCCCcCCCCCEEEecC---------------------------CCCCcchheEecCHHHeEEcCCccccccccccCC
Confidence            4789999999999999752                           1359999999999999999998           8


Q ss_pred             CCchhhhcch-hhHHHHHHHHH-cCCCCC-CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHH----HHHHHHcCC
Q 048013           70 VSLEEGAMCE-PLSVGVHACRR-ANIGPE-TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYR----LSVAKKLGA  141 (216)
Q Consensus        70 ~~~~~aa~~~-~~~~a~~~l~~-~~~~~~-~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~----~~~~~~~g~  141 (216)
                      +++++|+.++ ++.|||++++. .+++++ ++|||+|+ |++|++++|+|+.+|++ ++++.++.++    .+.++++|+
T Consensus       139 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~-vi~~~~~~~~~~~~~~~~~~lGa  217 (364)
T 1gu7_A          139 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFN-SISVIRDRPNLDEVVASLKELGA  217 (364)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCE-EEEEECCCTTHHHHHHHHHHHTC
T ss_pred             CCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCCE-EEEEecCccccHHHHHHHHhcCC
Confidence            9999999776 78899999976 589999 99999997 99999999999999995 7777655443    567789999


Q ss_pred             CEEEeCCCC-cccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC-CCcccchhhh
Q 048013          142 DNIVKVSTN-LQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR-EMTVPLTPAA  213 (216)
Q Consensus       142 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~  213 (216)
                      +.++++++. .+++.+.+++++...+.++|++||++|+... ..++++++++|+++.+|.... ..++++..++
T Consensus       218 ~~vi~~~~~~~~~~~~~i~~~t~~~~~g~Dvvid~~G~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  290 (364)
T 1gu7_A          218 TQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSS-TGIARKLNNNGLMLTYGGMSFQPVTIPTSLYI  290 (364)
T ss_dssp             SEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHH-HHHHHTSCTTCEEEECCCCSSCCEEECHHHHH
T ss_pred             eEEEecCccchHHHHHHHHHHhhccCCCceEEEECCCchhH-HHHHHHhccCCEEEEecCCCCCCcccCHHHHh
Confidence            998875321 1456666666531146789999999998554 488999999999999997543 3455555444

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=99.96  E-value=1e-28  Score=200.01  Aligned_cols=160  Identities=23%  Similarity=0.328  Sum_probs=133.1

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhc-ch
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAM-CE   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~-~~   79 (216)
                      ++|++|++|++||||+..+..                         ..+|+|+||+.+|++.++++|+++++++|+. ..
T Consensus        72 ~vG~~v~~~~vGdrV~~~~~~-------------------------~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~  126 (315)
T 3goh_A           72 KVGAKVDSKMLGRRVAYHTSL-------------------------KRHGSFAEFTVLNTDRVMTLPDNLSFERAAALPC  126 (315)
T ss_dssp             EECTTSCGGGTTCEEEEECCT-------------------------TSCCSSBSEEEEETTSEEECCTTSCHHHHHTSHH
T ss_pred             EeCCCCCCCCCCCEEEEeCCC-------------------------CCCcccccEEEEcHHHhccCcCCCCHHHHhhCcc
Confidence            478999999999999986321                         2469999999999999999999999999984 45


Q ss_pred             hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHH
Q 048013           80 PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE  159 (216)
Q Consensus        80 ~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (216)
                      ++.|||++++..+++++++|||+|+|++|++++|+|+.+|+ +|++++ +++++++++++|++.+++  + .       +
T Consensus       127 ~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~--d-~-------~  194 (315)
T 3goh_A          127 PLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVRHLYR--E-P-------S  194 (315)
T ss_dssp             HHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEEEEES--S-G-------G
T ss_pred             HHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCCEEEc--C-H-------H
Confidence            89999999977889999999999999999999999999999 699998 889999999999988763  1 1       1


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +    .+.++|++||++|+ ..+..++++|+++|+++.+|...
T Consensus       195 ~----v~~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~  232 (315)
T 3goh_A          195 Q----VTQKYFAIFDAVNS-QNAAALVPSLKANGHIICIQDRI  232 (315)
T ss_dssp             G----CCSCEEEEECC--------TTGGGEEEEEEEEEECCC-
T ss_pred             H----hCCCccEEEECCCc-hhHHHHHHHhcCCCEEEEEeCCC
Confidence            1    16789999999999 44588999999999999998544

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=99.95  E-value=3.6e-28  Score=199.48  Aligned_cols=181  Identities=17%  Similarity=0.195  Sum_probs=146.4

Q ss_pred             CCCCCC-CCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch
Q 048013            1 KVGSEV-KTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE   79 (216)
Q Consensus         1 ~vG~~v-~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~   79 (216)
                      ++|++| ++|++||||+.....                         ..+|+|+||+.+|++.++++|+++++++|+.+.
T Consensus        93 ~vG~~v~~~~~vGdrV~~~~g~-------------------------~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~  147 (349)
T 3pi7_A           93 AGGDEPYAKSLVGKRVAFATGL-------------------------SNWGSWAEYAVAEAAACIPLLDTVRDEDGAAMI  147 (349)
T ss_dssp             EECSSHHHHHHTTCEEEEECTT-------------------------SSCCSSBSEEEEEGGGEEECCTTCCC--GGGSS
T ss_pred             EECCCccCCCCCCCEEEEeccC-------------------------CCCccceeeEeechHHeEECCCCCCHHHHhhcc
Confidence            468888 899999999975211                         256999999999999999999999999999543


Q ss_pred             -hhHHHHHHHHHcCCCCC-CEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHH
Q 048013           80 -PLSVGVHACRRANIGPE-TNVLIMG-SGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAE  156 (216)
Q Consensus        80 -~~~~a~~~l~~~~~~~~-~~vlv~G-ag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  156 (216)
                       ...+||++++..+ +++ +++||+| +|++|++++|+|+.+|+ +|+++++++++++.++++|++.+++++  ++++.+
T Consensus       148 ~~~~ta~~~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~--~~~~~~  223 (349)
T 3pi7_A          148 VNPLTAIAMFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGF-RPIVTVRRDEQIALLKDIGAAHVLNEK--APDFEA  223 (349)
T ss_dssp             HHHHHHHHHHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHHTCSEEEETT--STTHHH
T ss_pred             ccHHHHHHHHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEECC--cHHHHH
Confidence             5667898777666 666 7888885 69999999999999999 599999999999999999999988864  356777


Q ss_pred             HHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC-CCcccc-hhhh
Q 048013          157 EVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR-EMTVPL-TPAA  213 (216)
Q Consensus       157 ~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~-~~~~  213 (216)
                      .+++++  .++++|++||++|+ ..+..++++|+++|+++.+|.... ...++. ..++
T Consensus       224 ~v~~~~--~~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~  279 (349)
T 3pi7_A          224 TLREVM--KAEQPRIFLDAVTG-PLASAIFNAMPKRARWIIYGRLDPDATVIREPGQLI  279 (349)
T ss_dssp             HHHHHH--HHHCCCEEEESSCH-HHHHHHHHHSCTTCEEEECCCSCCSCCCCSCTHHHH
T ss_pred             HHHHHh--cCCCCcEEEECCCC-hhHHHHHhhhcCCCEEEEEeccCCCCCCCCchhhhh
Confidence            777664  45689999999998 556889999999999999995443 455555 4444

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.95  E-value=2.1e-27  Score=193.24  Aligned_cols=181  Identities=25%  Similarity=0.304  Sum_probs=149.7

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-h
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-E   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~   79 (216)
                      ++|++|++|++||||...     +                      ..+|+|+||+.+|++.++++|+++++++|+.+ .
T Consensus        71 ~vG~~v~~~~~GdrV~~~-----g----------------------~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~  123 (327)
T 1qor_A           71 KVGSGVKHIKAGDRVVYA-----Q----------------------SALGAYSSVHNIIADKAAILPAAISFEQAAASFL  123 (327)
T ss_dssp             EECTTCCSCCTTCEEEES-----C----------------------CSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHH
T ss_pred             EECCCCCCCCCCCEEEEC-----C----------------------CCCceeeeEEEecHHHcEECCCCCCHHHHHHhhh
Confidence            478999999999999431     0                      13489999999999999999999999998744 5


Q ss_pred             hhHHHHHHHH-HcCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           80 PLSVGVHACR-RANIGPETNVLIMG-SGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        80 ~~~~a~~~l~-~~~~~~~~~vlv~G-ag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                      ++.|+|+++. ..+++++++|||+| +|++|++++|+++..|+ +|+++++++++++.++++|++.++++.  ++++.+.
T Consensus       124 ~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~  200 (327)
T 1qor_A          124 KGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVINYR--EEDLVER  200 (327)
T ss_dssp             HHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETT--TSCHHHH
T ss_pred             HHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEECC--CccHHHH
Confidence            8899999996 67899999999999 59999999999999999 599999999999999999999887754  3455555


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCC-Ccccchhhhh
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHRE-MTVPLTPAAA  214 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~  214 (216)
                      +.+.  +.+.++|++||++|. ..++.++++|+++|+++.+|..... .++++..++.
T Consensus       201 ~~~~--~~~~~~D~vi~~~g~-~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~  255 (327)
T 1qor_A          201 LKEI--TGGKKVRVVYDSVGR-DTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQ  255 (327)
T ss_dssp             HHHH--TTTCCEEEEEECSCG-GGHHHHHHTEEEEEEEEECCCTTCCCCCBCTHHHHH
T ss_pred             HHHH--hCCCCceEEEECCch-HHHHHHHHHhcCCCEEEEEecCCCCCCccCHHHHhh
Confidence            5554  245689999999995 7789999999999999999976543 3456555443

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=99.95  E-value=1.8e-27  Score=194.12  Aligned_cols=177  Identities=25%  Similarity=0.363  Sum_probs=148.6

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchh--hhcc
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEE--GAMC   78 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~--aa~~   78 (216)
                      ++|++|++|++||||+..+.                           ..|+|+||+.+|++.++++|+++++++  |+.+
T Consensus        74 ~vG~~v~~~~~GdrV~~~~~---------------------------~~G~~aey~~v~~~~~~~iP~~~~~~~~~aa~l  126 (333)
T 1wly_A           74 EVGPGVTDFTVGERVCTCLP---------------------------PLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGL  126 (333)
T ss_dssp             EECTTCCSCCTTCEEEECSS---------------------------SCCCSBSEEEEEGGGCEECCTTCCCCHHHHHHH
T ss_pred             EECCCCCCCCCCCEEEEecC---------------------------CCCcceeEEEecHHHcEeCCCCCChHHhCccch
Confidence            47899999999999976411                           158999999999999999999999999  6644


Q ss_pred             -hhhHHHHHHHH-HcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHH
Q 048013           79 -EPLSVGVHACR-RANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIA  155 (216)
Q Consensus        79 -~~~~~a~~~l~-~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  155 (216)
                       .++.|+|+++. ..+++++++|||+|+ |++|++++|+++..|+ +|+++++++++++.++++|++.++++.  ++++.
T Consensus       127 ~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~g~~~~~d~~--~~~~~  203 (333)
T 1wly_A          127 MLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCHHTINYS--TQDFA  203 (333)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETT--TSCHH
T ss_pred             hhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEECC--CHHHH
Confidence             58899999995 678999999999996 9999999999999999 599999999999999999999887754  34565


Q ss_pred             HHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC-CCcccch
Q 048013          156 EEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR-EMTVPLT  210 (216)
Q Consensus       156 ~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~  210 (216)
                      +.+.+..  .+.++|++||++|+ ..++.++++++++|+++.+|...+ ..++++.
T Consensus       204 ~~i~~~~--~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~  256 (333)
T 1wly_A          204 EVVREIT--GGKGVDVVYDSIGK-DTLQKSLDCLRPRGMCAAYGHASGVADPIRVV  256 (333)
T ss_dssp             HHHHHHH--TTCCEEEEEECSCT-TTHHHHHHTEEEEEEEEECCCTTCCCCCCCHH
T ss_pred             HHHHHHh--CCCCCeEEEECCcH-HHHHHHHHhhccCCEEEEEecCCCCcCCCChh
Confidence            6665542  45689999999999 778999999999999999997553 2345544

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=99.95  E-value=6.6e-27  Score=191.01  Aligned_cols=160  Identities=20%  Similarity=0.222  Sum_probs=140.1

Q ss_pred             CCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhh--h-cchhh
Q 048013            5 EVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEG--A-MCEPL   81 (216)
Q Consensus         5 ~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a--a-~~~~~   81 (216)
                      +|++|++||||+..                               |+|+||+.+|++.++++|+++++.++  + +..++
T Consensus        86 ~v~~~~vGdrV~~~-------------------------------G~~aey~~v~~~~~~~~P~~~~~~~~a~a~l~~~~  134 (336)
T 4b7c_A           86 KHPGFQAGDYVNGA-------------------------------LGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTG  134 (336)
T ss_dssp             CSTTCCTTCEEEEE-------------------------------CCSBSEEEECCTTCEEECTTTSCGGGGGTTTSHHH
T ss_pred             CCCCCCCCCEEecc-------------------------------CCceEEEEechHHeEEcCCCCCchHHHhhhcccHH
Confidence            57889999999974                               89999999999999999999977664  3 44588


Q ss_pred             HHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEEeCCCCcccHHHHH
Q 048013           82 SVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        82 ~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      .|||+++ +..+++++++|||+|+ |++|++++|+++..|+ +|+++++++++++.+ +++|++.++++.+  .++.+.+
T Consensus       135 ~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~  211 (336)
T 4b7c_A          135 MTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEELGFDGAIDYKN--EDLAAGL  211 (336)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCSEEEETTT--SCHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCEEEECCC--HHHHHHH
Confidence            9999999 7789999999999997 9999999999999999 599999999999998 8999998887643  5666666


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      .++   .++++|++||++|+ ..+..++++++++|+++.+|...
T Consensus       212 ~~~---~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~iv~~G~~~  251 (336)
T 4b7c_A          212 KRE---CPKGIDVFFDNVGG-EILDTVLTRIAFKARIVLCGAIS  251 (336)
T ss_dssp             HHH---CTTCEEEEEESSCH-HHHHHHHTTEEEEEEEEECCCGG
T ss_pred             HHh---cCCCceEEEECCCc-chHHHHHHHHhhCCEEEEEeecc
Confidence            664   35689999999998 77899999999999999999654

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=99.95  E-value=4.5e-27  Score=190.91  Aligned_cols=165  Identities=20%  Similarity=0.284  Sum_probs=138.7

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-   79 (216)
                      ++|++|++|++||||+..+..+                        ..+|+|+||+.+|++.++++|+++++++++.++ 
T Consensus        81 ~vG~~v~~~~~GdrV~~~~~~~------------------------~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~  136 (321)
T 3tqh_A           81 ELGSDVNNVNIGDKVMGIAGFP------------------------DHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPT  136 (321)
T ss_dssp             EECTTCCSCCTTCEEEEECSTT------------------------TCCCCSBSEEEECGGGEEECCTTSCHHHHHHSHH
T ss_pred             EeCCCCCCCCCCCEEEEccCCC------------------------CCCCcceEEEEecHHHhccCCCCCCHHHHhhhhh
Confidence            4789999999999999764221                        245999999999999999999999999999775 


Q ss_pred             hhHHHHHHHHHcCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCccc-HHHH
Q 048013           80 PLSVGVHACRRANIGPETNVLIMG-SGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQD-IAEE  157 (216)
Q Consensus        80 ~~~~a~~~l~~~~~~~~~~vlv~G-ag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~  157 (216)
                      ++.|+|++++..+++++++|||+| +|++|++++|+|+.+|+ +|++++ +++++++++++|++.++++++  .+ +.+ 
T Consensus       137 ~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~lGa~~~i~~~~--~~~~~~-  211 (321)
T 3tqh_A          137 AGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKALGAEQCINYHE--EDFLLA-  211 (321)
T ss_dssp             HHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHHHTCSEEEETTT--SCHHHH-
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHHcCCCEEEeCCC--cchhhh-
Confidence            566999999889999999999997 69999999999999999 488776 456688999999999888643  23 222 


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                             .-+++|++||++|++. +..++++++++|+++.+|...
T Consensus       212 -------~~~g~D~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~~~  248 (321)
T 3tqh_A          212 -------ISTPVDAVIDLVGGDV-GIQSIDCLKETGCIVSVPTIT  248 (321)
T ss_dssp             -------CCSCEEEEEESSCHHH-HHHHGGGEEEEEEEEECCSTT
T ss_pred             -------hccCCCEEEECCCcHH-HHHHHHhccCCCEEEEeCCCC
Confidence                   1258999999999944 589999999999999998543

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=99.95  E-value=3.2e-27  Score=193.83  Aligned_cols=165  Identities=22%  Similarity=0.322  Sum_probs=133.9

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-   79 (216)
                      ++|++|++|++||||+..                            ..+|+|+||+.+|++.++++|+++++++++.++ 
T Consensus        74 ~vG~~v~~~~~GdrV~~~----------------------------~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~  125 (349)
T 4a27_A           74 ALGDSVKGYEIGDRVMAF----------------------------VNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPM  125 (349)
T ss_dssp             EECTTCCSCCTTCEEEEE----------------------------CSSCCSBSEEEEEGGGEEECCTTSCHHHHHTSHH
T ss_pred             EeCCCCCCCCCCCEEEEe----------------------------cCCCcceEEEEecHHHeEECCCCCCHHHHHHHHH
Confidence            478999999999999875                            245999999999999999999999999999765 


Q ss_pred             hhHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           80 PLSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        80 ~~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                      ++.++|+++ +..+++++++|||+|+ |++|++++|+|+.+|..+|++++ ++++.+.++ +|++.+++   ...++.+.
T Consensus       126 ~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~~~~---~~~~~~~~  200 (349)
T 4a27_A          126 NFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTHLFD---RNADYVQE  200 (349)
T ss_dssp             HHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSEEEE---TTSCHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcEEEc---CCccHHHH
Confidence            788999998 5688999999999997 99999999999998755677776 567777777 99998887   23566666


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      ++++   .++++|++||++|+ ..+..++++|+++|+++.+|...
T Consensus       201 ~~~~---~~~g~Dvv~d~~g~-~~~~~~~~~l~~~G~~v~~G~~~  241 (349)
T 4a27_A          201 VKRI---SAEGVDIVLDCLCG-DNTGKGLSLLKPLGTYILYGSSN  241 (349)
T ss_dssp             HHHH---CTTCEEEEEEECC--------CTTEEEEEEEEEEC---
T ss_pred             HHHh---cCCCceEEEECCCc-hhHHHHHHHhhcCCEEEEECCCc
Confidence            6664   46799999999998 45588999999999999999643

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=99.95  E-value=2.6e-27  Score=195.01  Aligned_cols=180  Identities=19%  Similarity=0.252  Sum_probs=138.2

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-   79 (216)
                      ++|++|++|++||||+..+.                           ..|+|+||+.+|++.++++|+++++++|+.++ 
T Consensus        98 ~vG~~v~~~~vGdrV~~~~~---------------------------~~G~~aey~~v~~~~~~~iP~~l~~~~Aa~l~~  150 (357)
T 1zsy_A           98 AVGSNVTGLKPGDWVIPANA---------------------------GLGTWRTEAVFSEEALIQVPSDIPLQSAATLGV  150 (357)
T ss_dssp             EECTTCCSCCTTCEEEESSS---------------------------CSCCSBSEEEEEGGGEEEECSSSCHHHHHHTTS
T ss_pred             EeCCCCCCCCCCCEEEEcCC---------------------------CCccceeEEecCHHHcEECCCCCCHHHHhhhcc
Confidence            47899999999999997521                           24999999999999999999999999999775 


Q ss_pred             hhHHHHHHHH-HcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh---HHHHHHHHcCCCEEEeCCCCcccH
Q 048013           80 PLSVGVHACR-RANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDD---YRLSVAKKLGADNIVKVSTNLQDI  154 (216)
Q Consensus        80 ~~~~a~~~l~-~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~  154 (216)
                      +..|||+++. ..+++++++|||+|+ |++|++++|+|+.+|++.+++++.++   +++++++++|++.++++++   ..
T Consensus       151 ~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~---~~  227 (357)
T 1zsy_A          151 NPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEE---LR  227 (357)
T ss_dssp             HHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHH---HH
T ss_pred             cHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCc---ch
Confidence            6779999984 578999999999997 99999999999999996444444433   3567889999999887421   01


Q ss_pred             HHHHHHHHHHcC-CCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC-CCCcccchhhh
Q 048013          155 AEEVEKIQKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-REMTVPLTPAA  213 (216)
Q Consensus       155 ~~~~~~~~~~~~-~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~  213 (216)
                      .+.+.++  +.+ .++|++||++|++ ....++++++++|+++.+|... ....+++..++
T Consensus       228 ~~~~~~~--~~~~~~~Dvvid~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~  285 (357)
T 1zsy_A          228 RPEMKNF--FKDMPQPRLALNCVGGK-SSTELLRQLARGGTMVTYGGMAKQPVVASVSLLI  285 (357)
T ss_dssp             SGGGGGT--TSSSCCCSEEEESSCHH-HHHHHHTTSCTTCEEEECCCCTTCCBCCCHHHHH
T ss_pred             HHHHHHH--HhCCCCceEEEECCCcH-HHHHHHHhhCCCCEEEEEecCCCCCCCCCHHHHH
Confidence            1122222  122 2599999999984 4467899999999999998543 34555555444

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=99.95  E-value=1.1e-26  Score=192.41  Aligned_cols=168  Identities=21%  Similarity=0.269  Sum_probs=140.6

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-   79 (216)
                      ++|++|++|++||||+..+..                         ...|+|+||+.+|++.++++|+++++++|+.++ 
T Consensus       108 ~vG~~V~~~~vGDrV~~~~~~-------------------------~~~G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~  162 (375)
T 2vn8_A          108 ECGLDVKYFKPGDEVWAAVPP-------------------------WKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPY  162 (375)
T ss_dssp             EECTTCCSCCTTCEEEEECCT-------------------------TSCCSSBSEEEEEGGGEEECCTTSCHHHHTTSHH
T ss_pred             EeCCCCCCCCCCCEEEEecCC-------------------------CCCccceeEEEEcHHHeeeCCCCCCHHHHhhhHH
Confidence            478999999999999975311                         135999999999999999999999999999776 


Q ss_pred             hhHHHHHHH-HHcC----CCCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCccc
Q 048013           80 PLSVGVHAC-RRAN----IGPETNVLIMG-SGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQD  153 (216)
Q Consensus        80 ~~~~a~~~l-~~~~----~~~~~~vlv~G-ag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  153 (216)
                      ++.|||+++ +..+    ++++++|||+| +|++|++++|+|+.+|+ +|++++ ++++++.++++|++.++++++  ++
T Consensus       163 ~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~~~~--~~  238 (375)
T 2vn8_A          163 VALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVC-SQDASELVRKLGADDVIDYKS--GS  238 (375)
T ss_dssp             HHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHHTTCSEEEETTS--SC
T ss_pred             HHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEe-ChHHHHHHHHcCCCEEEECCc--hH
Confidence            577999999 4677    89999999999 59999999999999999 588887 568888999999999888643  45


Q ss_pred             HHHHHHHHHHHcCCCccEEEEcCCCH-HHHHHHHHHhhcCCEEEEeccCC
Q 048013          154 IAEEVEKIQKAMGTGIDVSFDCAGFN-KTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +.+.+.+     ..++|++||++|+. ..+..++++++++|+++.+|...
T Consensus       239 ~~~~~~~-----~~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~  283 (375)
T 2vn8_A          239 VEEQLKS-----LKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPF  283 (375)
T ss_dssp             HHHHHHT-----SCCBSEEEESSCTTHHHHGGGGBCSSSCCEEEESCCSH
T ss_pred             HHHHHhh-----cCCCCEEEECCCChhhhhHHHHHhhcCCcEEEEeCCCc
Confidence            5444432     35899999999995 45578889999999999999643

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=99.94  E-value=7.3e-27  Score=189.82  Aligned_cols=177  Identities=19%  Similarity=0.238  Sum_probs=140.7

Q ss_pred             CCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-hhHHH
Q 048013            6 VKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-PLSVG   84 (216)
Q Consensus         6 v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a   84 (216)
                      +++|++||||++.+   |.                  ++. ..+|+|+||+.+|++.++++|+++++++|+.++ .+.|+
T Consensus        74 v~~~~vGdrV~~~~---~~------------------~g~-~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta  131 (324)
T 3nx4_A           74 DPRFHAGQEVLLTG---WG------------------VGE-NHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTA  131 (324)
T ss_dssp             STTCCTTCEEEEEC---TT------------------BTT-TBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEcc---cc------------------cCC-CCCCceeeEEecCHHHcEECCCCCCHHHHHHhhhHHHHH
Confidence            57899999999753   10                  111 256999999999999999999999999999776 56788


Q ss_pred             HHHH---HHcCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHH
Q 048013           85 VHAC---RRANIGPET-NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVE  159 (216)
Q Consensus        85 ~~~l---~~~~~~~~~-~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (216)
                      |.++   ...++++++ +|||+|+ |++|++++|+|+.+|++ |++++++++++++++++|++.++++++.+  .   ++
T Consensus       132 ~~al~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~-Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~--~---~~  205 (324)
T 3nx4_A          132 MLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQ-VAAVSGRESTHGYLKSLGANRILSRDEFA--E---SR  205 (324)
T ss_dssp             HHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCGGGHHHHHHHTCSEEEEGGGSS--C---CC
T ss_pred             HHHHHHhhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHhcCCCEEEecCCHH--H---HH
Confidence            8776   345566632 4999997 99999999999999995 99999999999999999999998864322  1   22


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCC-Ccccchhhhh
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHRE-MTVPLTPAAA  214 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~  214 (216)
                      ++   .+.++|++||++|+ ..++.++++++++|+++.+|..... .++++..++.
T Consensus       206 ~~---~~~~~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~  257 (324)
T 3nx4_A          206 PL---EKQLWAGAIDTVGD-KVLAKVLAQMNYGGCVAACGLAGGFALPTTVMPFIL  257 (324)
T ss_dssp             SS---CCCCEEEEEESSCH-HHHHHHHHTEEEEEEEEECCCTTCSEEEEESHHHHH
T ss_pred             hh---cCCCccEEEECCCc-HHHHHHHHHHhcCCEEEEEecCCCCCCCCCHHHHhh
Confidence            22   35689999999998 5889999999999999999976553 4555555443

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=99.94  E-value=3.6e-27  Score=195.58  Aligned_cols=156  Identities=18%  Similarity=0.223  Sum_probs=133.2

Q ss_pred             CCCCCC-CCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch
Q 048013            1 KVGSEV-KTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE   79 (216)
Q Consensus         1 ~vG~~v-~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~   79 (216)
                      ++|++| ++|++||||+..                             .+|+|+||+.+|++.++++|+++++++|+.+.
T Consensus       104 ~vG~~v~~~~~vGdrV~~~-----------------------------~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~  154 (379)
T 3iup_A          104 EAGSSPAAQALMGKTVAAI-----------------------------GGAMYSQYRCIPADQCLVLPEGATPADGASSF  154 (379)
T ss_dssp             EECSSHHHHTTTTCEEEEC-----------------------------CSCCSBSEEEEEGGGEEECCTTCCHHHHTTSS
T ss_pred             EeCCCcccCCCCCCEEEec-----------------------------CCCcceeEEEeCHHHeEECCCCCCHHHHHhhh
Confidence            368888 789999999985                             35999999999999999999999999999543


Q ss_pred             -hhHHHHHHHHHcCCCCCCEEEEE--cCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHH
Q 048013           80 -PLSVGVHACRRANIGPETNVLIM--GSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAE  156 (216)
Q Consensus        80 -~~~~a~~~l~~~~~~~~~~vlv~--Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  156 (216)
                       ...|+|++++... +++++|||+  |+|++|++++|+|+.+|++ |++++++++++++++++|++.+++++  ++++.+
T Consensus       155 ~~~~ta~~~~~~~~-~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~-Vi~~~~~~~~~~~~~~lGa~~~~~~~--~~~~~~  230 (379)
T 3iup_A          155 VNPLTALGMVETMR-LEGHSALVHTAAASNLGQMLNQICLKDGIK-LVNIVRKQEQADLLKAQGAVHVCNAA--SPTFMQ  230 (379)
T ss_dssp             HHHHHHHHHHHHHH-HTTCSCEEESSTTSHHHHHHHHHHHHHTCC-EEEEESSHHHHHHHHHTTCSCEEETT--STTHHH
T ss_pred             hhHHHHHHHHHHhc-cCCCEEEEECCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHhCCCcEEEeCC--ChHHHH
Confidence             5667898887665 899999999  4699999999999999995 99999999999999999999998864  357777


Q ss_pred             HHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhc
Q 048013          157 EVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRA  191 (216)
Q Consensus       157 ~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~  191 (216)
                      .+++++  .++++|++||++|++...+.+++++++
T Consensus       231 ~v~~~t--~~~g~d~v~d~~g~~~~~~~~~~~l~~  263 (379)
T 3iup_A          231 DLTEAL--VSTGATIAFDATGGGKLGGQILTCMEA  263 (379)
T ss_dssp             HHHHHH--HHHCCCEEEESCEEESHHHHHHHHHHH
T ss_pred             HHHHHh--cCCCceEEEECCCchhhHHHHHHhcch
Confidence            777764  456899999999986677788888853

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=99.94  E-value=3.6e-26  Score=188.50  Aligned_cols=165  Identities=18%  Similarity=0.271  Sum_probs=141.4

Q ss_pred             CCCCCCC-CCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch
Q 048013            1 KVGSEVK-TLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE   79 (216)
Q Consensus         1 ~vG~~v~-~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~   79 (216)
                      ++|++|+ +|++||||+..                             ..|+|+||+.+|++.++++|+. .++.+++..
T Consensus        97 ~vG~~V~~~~~vGdrV~~~-----------------------------~~G~~aey~~v~~~~~~~~P~~-~~~aaal~~  146 (362)
T 2c0c_A           97 ALGLSASARYTVGQAVAYM-----------------------------APGSFAEYTVVPASIATPVPSV-KPEYLTLLV  146 (362)
T ss_dssp             EECTTGGGTCCTTCEEEEE-----------------------------CSCCSBSEEEEEGGGCEECSSS-CHHHHTTTT
T ss_pred             EECCCccCCCCCCCEEEEc-----------------------------cCCcceeEEEEcHHHeEECCCC-chHhhcccc
Confidence            4689999 99999999875                             3599999999999999999986 455555666


Q ss_pred             hhHHHHHHH-HHcCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           80 PLSVGVHAC-RRANIGPETNVLIMG-SGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        80 ~~~~a~~~l-~~~~~~~~~~vlv~G-ag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                      ++.+||+++ +..+++++++|||+| +|++|++++|+|+..|+ +|+++++++++++.++++|++.++++++  +++.+.
T Consensus       147 ~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~--~~~~~~  223 (362)
T 2c0c_A          147 SGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSLGCDRPINYKT--EPVGTV  223 (362)
T ss_dssp             HHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTT--SCHHHH
T ss_pred             hHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCCcEEEecCC--hhHHHH
Confidence            888999999 567899999999999 59999999999999999 5999999999999999999998887643  455555


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +++.   .+.++|++||++|. ..++.++++|+++|+++.+|...
T Consensus       224 ~~~~---~~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~g~~~  264 (362)
T 2c0c_A          224 LKQE---YPEGVDVVYESVGG-AMFDLAVDALATKGRLIVIGFIS  264 (362)
T ss_dssp             HHHH---CTTCEEEEEECSCT-HHHHHHHHHEEEEEEEEECCCGG
T ss_pred             HHHh---cCCCCCEEEECCCH-HHHHHHHHHHhcCCEEEEEeCCC
Confidence            5543   45689999999998 77899999999999999999644

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=99.94  E-value=6e-26  Score=184.74  Aligned_cols=179  Identities=20%  Similarity=0.253  Sum_probs=139.3

Q ss_pred             CCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-hhHH
Q 048013            5 EVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-PLSV   83 (216)
Q Consensus         5 ~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~   83 (216)
                      ++++|++||||+..+.                     .++. ...|+|+||+.+|++.++++|+++++++|+.++ .+.|
T Consensus        76 ~v~~~~vGdrV~~~~~---------------------~~g~-~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~t  133 (328)
T 1xa0_A           76 QHPRFREGDEVIATGY---------------------EIGV-THFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFT  133 (328)
T ss_dssp             CSSSCCTTCEEEEEST---------------------TBTT-TBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEccc---------------------cCCC-CCCccceeEEEechHHeEECCCCCCHHHhhhhhhhHHH
Confidence            4678999999997521                     0111 246999999999999999999999999999776 4557


Q ss_pred             HHHHH---HHcCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           84 GVHAC---RRANIGPET-NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        84 a~~~l---~~~~~~~~~-~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      +|.++   +..++++++ +|||+|+ |++|++++|+|+.+|++ |++++++++++++++++|++.++++.+.  + .+.+
T Consensus       134 a~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~-vi~~~~~~~~~~~~~~lGa~~~i~~~~~--~-~~~~  209 (328)
T 1xa0_A          134 AALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYT-VEASTGKAAEHDYLRVLGAKEVLAREDV--M-AERI  209 (328)
T ss_dssp             HHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCTTCHHHHHHTTCSEEEECC----------
T ss_pred             HHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHcCCcEEEecCCc--H-HHHH
Confidence            77665   446788886 9999997 99999999999999996 9999999999999999999998876421  1 2223


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC-CCcccchhhh
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR-EMTVPLTPAA  213 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~  213 (216)
                      +++   .+.++|++||++|+ ..+..++++++++|+++.+|...+ ..++++..++
T Consensus       210 ~~~---~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~  261 (328)
T 1xa0_A          210 RPL---DKQRWAAAVDPVGG-RTLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFI  261 (328)
T ss_dssp             --C---CSCCEEEEEECSTT-TTHHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHH
T ss_pred             HHh---cCCcccEEEECCcH-HHHHHHHHhhccCCEEEEEeecCCCCCCCchhhhh
Confidence            332   35689999999999 678899999999999999997654 3455555544

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.93  E-value=1.2e-26  Score=207.85  Aligned_cols=166  Identities=20%  Similarity=0.321  Sum_probs=143.4

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-   79 (216)
                      ++|++|++|++||||+..                             ..|+|+||+.+|++.++++|+++++++|+.++ 
T Consensus       278 ~vG~~V~~~~vGDrV~~~-----------------------------~~G~~ae~~~v~~~~~~~iP~~ls~~~AA~l~~  328 (795)
T 3slk_A          278 ETGPGVTGLAPGDRVMGM-----------------------------IPKAFGPLAVADHRMVTRIPAGWSFARAASVPI  328 (795)
T ss_dssp             EECSSCCSSCTTCEEEEC-----------------------------CSSCSSSEEEEETTSEEECCTTCCHHHHHHHHH
T ss_pred             EeCCCCCcCCCCCEEEEE-----------------------------ecCCCcCEEEeehHHEEECCCCCCHHHHHhhhH
Confidence            479999999999999875                             45899999999999999999999999999876 


Q ss_pred             hhHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHH
Q 048013           80 PLSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        80 ~~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  157 (216)
                      .+.|+|+++ +..++++|++|||+|+ |++|++++|+|+.+|++ |+++++++ |.+.++ +|.+.++++.  +.++.+.
T Consensus       329 ~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~-V~~t~~~~-k~~~l~-lga~~v~~~~--~~~~~~~  403 (795)
T 3slk_A          329 VFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAE-VYATASED-KWQAVE-LSREHLASSR--TCDFEQQ  403 (795)
T ss_dssp             HHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTCC-EEEECCGG-GGGGSC-SCGGGEECSS--SSTHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCCE-EEEEeChH-Hhhhhh-cChhheeecC--ChhHHHH
Confidence            678999998 6788999999999996 99999999999999996 88887665 555555 8999888753  4577777


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      ++++  +.++|+|+|||++++ +.++.++++|+++|+++.+|....
T Consensus       404 i~~~--t~g~GvDvVld~~gg-~~~~~~l~~l~~~Gr~v~iG~~~~  446 (795)
T 3slk_A          404 FLGA--TGGRGVDVVLNSLAG-EFADASLRMLPRGGRFLELGKTDV  446 (795)
T ss_dssp             HHHH--SCSSCCSEEEECCCT-TTTHHHHTSCTTCEEEEECCSTTC
T ss_pred             HHHH--cCCCCeEEEEECCCc-HHHHHHHHHhcCCCEEEEeccccc
Confidence            7665  467899999999998 777999999999999999996543

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.93  E-value=1.3e-25  Score=183.93  Aligned_cols=164  Identities=18%  Similarity=0.236  Sum_probs=137.8

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCc--eEECCC---CCCchhhh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADL--CFKLPD---NVSLEEGA   76 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~ip~---~~~~~~aa   76 (216)
                      +|++|++|++||||+..                               |+|+||+.+++..  ++++|+   +++++.|+
T Consensus        87 V~~~v~~~~vGdrV~~~-------------------------------g~~aey~~v~~~~~~~~~ip~~~~~~~~~aa~  135 (345)
T 2j3h_A           87 IESGHPDYKKGDLLWGI-------------------------------VAWEEYSVITPMTHAHFKIQHTDVPLSYYTGL  135 (345)
T ss_dssp             EEECSTTCCTTCEEEEE-------------------------------EESBSEEEECCCTTTCEEECCCSSCTTGGGTT
T ss_pred             EecCCCCCCCCCEEEee-------------------------------cCceeEEEecccccceeecCCCCCCHHHHHHh
Confidence            57788899999999864                               7899999999877  999996   45666555


Q ss_pred             cchhhHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-HcCCCEEEeCCCCccc
Q 048013           77 MCEPLSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KLGADNIVKVSTNLQD  153 (216)
Q Consensus        77 ~~~~~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~  153 (216)
                      +..++.|||+++ +..+++++++|||+|+ |++|++++|+++..|+ +|+++++++++++.++ ++|++.++++.+ ..+
T Consensus       136 l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~~g~~~~~d~~~-~~~  213 (345)
T 2j3h_A          136 LGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKE-ESD  213 (345)
T ss_dssp             TSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTSCCSEEEETTS-CSC
T ss_pred             ccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEecCC-HHH
Confidence            556889999999 5688999999999996 9999999999999999 5999999999999987 799998887643 235


Q ss_pred             HHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          154 IAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +.+.++++   .++++|++||++|. ..++.++++++++|+++.+|...
T Consensus       214 ~~~~~~~~---~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~G~~~  258 (345)
T 2j3h_A          214 LTAALKRC---FPNGIDIYFENVGG-KMLDAVLVNMNMHGRIAVCGMIS  258 (345)
T ss_dssp             SHHHHHHH---CTTCEEEEEESSCH-HHHHHHHTTEEEEEEEEECCCGG
T ss_pred             HHHHHHHH---hCCCCcEEEECCCH-HHHHHHHHHHhcCCEEEEEcccc
Confidence            55555554   34689999999998 78899999999999999999654

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=99.93  E-value=7.2e-25  Score=180.35  Aligned_cols=163  Identities=21%  Similarity=0.249  Sum_probs=139.0

Q ss_pred             CCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCC-----Cchhhhcc
Q 048013            4 SEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNV-----SLEEGAMC   78 (216)
Q Consensus         4 ~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~-----~~~~aa~~   78 (216)
                      ++|++|++||||+..                              .|+|+||+.+|++.++++|+++     +++.+++.
T Consensus        91 ~~v~~~~vGdrV~~~------------------------------~G~~aey~~v~~~~~~~iP~~~~~~~~~~~~a~l~  140 (357)
T 2zb4_A           91 SKHTNLTKGDFVTSF------------------------------YWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIG  140 (357)
T ss_dssp             ECSTTCCTTCEEEEE------------------------------EEESBSEEEEEGGGCEECCGGGGTTCGGGGGTTTS
T ss_pred             cCCCCCCCCCEEEec------------------------------CCCcEEEEEEchHHceecCcccccCchhHHHHhcc
Confidence            467889999999874                              2799999999999999999998     66655566


Q ss_pred             hhhHHHHHHH-HHcCCCCC--CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-cCCCEEEeCCCCccc
Q 048013           79 EPLSVGVHAC-RRANIGPE--TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-LGADNIVKVSTNLQD  153 (216)
Q Consensus        79 ~~~~~a~~~l-~~~~~~~~--~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~  153 (216)
                      .++.|||+++ +..+++++  ++|||+|+ |++|++++|+++..|+.+|+++++++++++.+++ +|++.++++.+  ++
T Consensus       141 ~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~--~~  218 (357)
T 2zb4_A          141 MPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKK--DN  218 (357)
T ss_dssp             HHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTT--SC
T ss_pred             cHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCc--hH
Confidence            6899999999 77889999  99999997 9999999999999999559999999999888876 99998887643  46


Q ss_pred             HHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          154 IAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +.+.+.++   .+.++|++||++|+ ..++.++++++++|+++.+|...
T Consensus       219 ~~~~~~~~---~~~~~d~vi~~~G~-~~~~~~~~~l~~~G~iv~~G~~~  263 (357)
T 2zb4_A          219 VAEQLRES---CPAGVDVYFDNVGG-NISDTVISQMNENSHIILCGQIS  263 (357)
T ss_dssp             HHHHHHHH---CTTCEEEEEESCCH-HHHHHHHHTEEEEEEEEECCCGG
T ss_pred             HHHHHHHh---cCCCCCEEEECCCH-HHHHHHHHHhccCcEEEEECCcc
Confidence            65556554   23389999999997 77899999999999999999754

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=99.93  E-value=5.6e-26  Score=185.06  Aligned_cols=179  Identities=22%  Similarity=0.294  Sum_probs=139.8

Q ss_pred             CCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-hhHH
Q 048013            5 EVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-PLSV   83 (216)
Q Consensus         5 ~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~   83 (216)
                      ++++|++||||++.+..                     +|. ..+|+|+||+.+|++.++++|+++++++|+.++ .+.|
T Consensus        77 ~v~~~~vGdrV~~~~~~---------------------~g~-~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~t  134 (330)
T 1tt7_A           77 NDPRFAEGDEVIATSYE---------------------LGV-SRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFT  134 (330)
T ss_dssp             SSTTCCTTCEEEEESTT---------------------BTT-TBCCSSBSSEEECGGGEEECCTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEcccc---------------------cCC-CCCccceeEEEecHHHeEECCCCCCHHHHhhccchHHH
Confidence            46789999999975210                     111 246999999999999999999999999999776 4567


Q ss_pred             HHHHH---HHcCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH
Q 048013           84 GVHAC---RRANIGPET-NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        84 a~~~l---~~~~~~~~~-~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      +|.++   +..++++++ +|||+|+ |++|++++|+|+.+|++ |+++++++++++.++++|++.++++++.  + .+.+
T Consensus       135 a~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~-vi~~~~~~~~~~~~~~lGa~~v~~~~~~--~-~~~~  210 (330)
T 1tt7_A          135 AALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYD-VVASTGNREAADYLKQLGASEVISREDV--Y-DGTL  210 (330)
T ss_dssp             HHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCC-EEEEESSSSTHHHHHHHTCSEEEEHHHH--C-SSCC
T ss_pred             HHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHcCCcEEEECCCc--h-HHHH
Confidence            77665   446788886 9999997 99999999999999996 9999999999999999999988764211  0 0111


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC-CCcccchhhh
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR-EMTVPLTPAA  213 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~  213 (216)
                      ++   ..+.++|++||++|+ ..+..++++++++|+++.+|...+ ..++++..++
T Consensus       211 ~~---~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~  262 (330)
T 1tt7_A          211 KA---LSKQQWQGAVDPVGG-KQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFI  262 (330)
T ss_dssp             CS---SCCCCEEEEEESCCT-HHHHHHHTTEEEEEEEEECCCSSCSCEEECSHHHH
T ss_pred             HH---hhcCCccEEEECCcH-HHHHHHHHhhcCCCEEEEEecCCCCccCcchHHHH
Confidence            11   134579999999999 678999999999999999997654 3455554444

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.93  E-value=3.1e-24  Score=174.93  Aligned_cols=161  Identities=20%  Similarity=0.267  Sum_probs=135.4

Q ss_pred             CCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCC----CCchh--hhcc
Q 048013            5 EVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDN----VSLEE--GAMC   78 (216)
Q Consensus         5 ~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~----~~~~~--aa~~   78 (216)
                      +|++|++||||+..                               |+|+||+.+|++.++++|++    +++++  +++.
T Consensus        79 ~v~~~~vGdrV~~~-------------------------------g~~aey~~v~~~~~~~iP~~~~~~~~~~~a~a~l~  127 (333)
T 1v3u_A           79 KNSAFPAGSIVLAQ-------------------------------SGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIG  127 (333)
T ss_dssp             SCTTSCTTCEEEEC-------------------------------CCSBSEEEESSTTEEECC--CCTTSCGGGGGTTTS
T ss_pred             CCCCCCCCCEEEec-------------------------------CceEEEEEechHHeEEcCcccccCCCHHHHHHHhC
Confidence            56789999999874                               78999999999999999997    77776  3455


Q ss_pred             hhhHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHH
Q 048013           79 EPLSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAE  156 (216)
Q Consensus        79 ~~~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  156 (216)
                      .++.|||+++ +..++++++++||+|+ |++|++++++++..|+ +|+++++++++++.++++|++.++++.+ .+++.+
T Consensus       128 ~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~d~~~-~~~~~~  205 (333)
T 1v3u_A          128 MPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKT-VNSLEE  205 (333)
T ss_dssp             HHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS-CSCHHH
T ss_pred             ChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCcEEEecCC-HHHHHH
Confidence            6889999999 6678999999999997 9999999999999999 5999999999999899999988877542 145666


Q ss_pred             HHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          157 EVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       157 ~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      .+.++   .++++|++||++|. ..++.++++++++|+++.+|...
T Consensus       206 ~~~~~---~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~g~~~  247 (333)
T 1v3u_A          206 ALKKA---SPDGYDCYFDNVGG-EFLNTVLSQMKDFGKIAICGAIS  247 (333)
T ss_dssp             HHHHH---CTTCEEEEEESSCH-HHHHHHHTTEEEEEEEEECCCCC
T ss_pred             HHHHH---hCCCCeEEEECCCh-HHHHHHHHHHhcCCEEEEEeccc
Confidence            66554   23589999999998 66789999999999999999754

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=99.91  E-value=2.6e-24  Score=173.21  Aligned_cols=153  Identities=24%  Similarity=0.388  Sum_probs=123.3

Q ss_pred             CCCccceeEEecCCceEECCCCCCchhhhcch-hhHHHHHHHH-HcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEE
Q 048013           48 VHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-PLSVGVHACR-RANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIV  124 (216)
Q Consensus        48 ~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~-~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv  124 (216)
                      .+|+|+||+.+|++.++++|+++++++++.++ ++.|||+++. .. ++++++|||+|+ |++|++++|+++.+|+ +|+
T Consensus        77 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi  154 (302)
T 1iz0_A           77 PQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVL  154 (302)
T ss_dssp             SSCCSBSEEEEEGGGCEECCTTCCHHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEE
T ss_pred             CCcceeeEEEEcHHHcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEE
Confidence            35999999999999999999999999987554 8899999995 56 999999999997 9999999999999999 599


Q ss_pred             EEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCC
Q 048013          125 IVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHRE  204 (216)
Q Consensus       125 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~  204 (216)
                      ++++++++++.++++|++.++++.+ .+++.+   ++     +++|++|| +|+ ..++.++++++++|+++.+|.....
T Consensus       155 ~~~~~~~~~~~~~~~ga~~~~~~~~-~~~~~~---~~-----~~~d~vid-~g~-~~~~~~~~~l~~~G~~v~~g~~~~~  223 (302)
T 1iz0_A          155 AAASRPEKLALPLALGAEEAATYAE-VPERAK---AW-----GGLDLVLE-VRG-KEVEESLGLLAHGGRLVYIGAAEGE  223 (302)
T ss_dssp             EEESSGGGSHHHHHTTCSEEEEGGG-HHHHHH---HT-----TSEEEEEE-CSC-TTHHHHHTTEEEEEEEEEC------
T ss_pred             EEeCCHHHHHHHHhcCCCEEEECCc-chhHHH---Hh-----cCceEEEE-CCH-HHHHHHHHhhccCCEEEEEeCCCCC
Confidence            9999999999999999998876421 022222   21     57999999 998 7789999999999999999975543


Q ss_pred             -Ccccchhhh
Q 048013          205 -MTVPLTPAA  213 (216)
Q Consensus       205 -~~~~~~~~~  213 (216)
                       .++++..++
T Consensus       224 ~~~~~~~~~~  233 (302)
T 1iz0_A          224 VAPIPPLRLM  233 (302)
T ss_dssp             -CCCCTTHHH
T ss_pred             CCCcCHHHHH
Confidence             245554443

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.84  E-value=1.1e-20  Score=185.07  Aligned_cols=147  Identities=16%  Similarity=0.237  Sum_probs=127.8

Q ss_pred             CCCccceeEEecCCceEECCCCCCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEE
Q 048013           48 VHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIV  124 (216)
Q Consensus        48 ~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv  124 (216)
                      ..|+|+||+.+|++.++++|+++++++|+.++ .+.|+|+++ +..++++|++|||+|+ |++|++++|+|+.+|++ |+
T Consensus      1618 ~~G~~Aeyv~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~-Vi 1696 (2512)
T 2vz8_A         1618 PAEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCR-VF 1696 (2512)
T ss_dssp             SSCCSBSEEECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EE
T ss_pred             cCCceeeEEEcccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCCE-EE
Confidence            35899999999999999999999999999876 778999999 6678999999999985 99999999999999994 89


Q ss_pred             EEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEecc
Q 048013          125 IVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       125 ~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      +++.++++++.+++    +|.+.++++.  +.++.+.+.+.  +.++|+|+|||++++ +.++..+++++++|+++.+|.
T Consensus      1697 at~~s~~k~~~l~~~~~~lga~~v~~~~--~~~~~~~i~~~--t~g~GvDvVld~~g~-~~l~~~l~~L~~~Gr~V~iG~ 1771 (2512)
T 2vz8_A         1697 TTVGSAEKRAYLQARFPQLDETCFANSR--DTSFEQHVLRH--TAGKGVDLVLNSLAE-EKLQASVRCLAQHGRFLEIGK 1771 (2512)
T ss_dssp             EEESCHHHHHHHHHHCTTCCSTTEEESS--SSHHHHHHHHT--TTSCCEEEEEECCCH-HHHHHHHTTEEEEEEEEECCC
T ss_pred             EEeCChhhhHHHHhhcCCCCceEEecCC--CHHHHHHHHHh--cCCCCceEEEECCCc-hHHHHHHHhcCCCcEEEEeec
Confidence            99999999888875    6788887753  34666656554  457799999999986 788999999999999999985

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.82  E-value=1e-19  Score=137.61  Aligned_cols=136  Identities=23%  Similarity=0.393  Sum_probs=103.9

Q ss_pred             CceEECCCCCCchhhhcch-hhHHHHHHHH-HcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH
Q 048013           61 DLCFKLPDNVSLEEGAMCE-PLSVGVHACR-RANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK  137 (216)
Q Consensus        61 ~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~-~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~  137 (216)
                      +.++++|+++++++|+.++ ++.|+|+++. ..+++++++|+|+|+ |++|++++++++..|+ +|+++++++++.+.++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            4678999999999999775 8899999994 578999999999995 9999999999999999 5999999999988888


Q ss_pred             HcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          138 KLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       138 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      ++|.+.++++.+  .++.+.+.+.  +.+.++|++||++|. ..++.++++|+++|+++.+|...
T Consensus        81 ~~g~~~~~d~~~--~~~~~~~~~~--~~~~~~D~vi~~~g~-~~~~~~~~~l~~~G~~v~~g~~~  140 (198)
T 1pqw_A           81 RLGVEYVGDSRS--VDFADEILEL--TDGYGVDVVLNSLAG-EAIQRGVQILAPGGRFIELGKKD  140 (198)
T ss_dssp             TTCCSEEEETTC--STHHHHHHHH--TTTCCEEEEEECCCT-HHHHHHHHTEEEEEEEEECSCGG
T ss_pred             HcCCCEEeeCCc--HHHHHHHHHH--hCCCCCeEEEECCch-HHHHHHHHHhccCCEEEEEcCCC
Confidence            899887776532  4555555443  234579999999987 77899999999999999999754

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.47  E-value=1.4e-13  Score=106.92  Aligned_cols=174  Identities=13%  Similarity=0.039  Sum_probs=112.0

Q ss_pred             CCCCCCEEEEcC-------CcCCCCCcchhCCCCCCCCCC-CCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch
Q 048013            8 TLVPGDRVALEP-------GISCWQCDYCKGGRYNLCPES-KGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE   79 (216)
Q Consensus         8 ~~~~Gd~V~~~~-------~~~~~~c~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~   79 (216)
                      -+++||+|++.+       ...|++|..|+.|..++|... ..+      |...++..++......+++......++.+.
T Consensus         3 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~g~~~------G~~~~~~~~~~p~~~~~~~~~~~~~~~~~~   76 (248)
T 2yvl_A            3 SFKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGKPE------GVKINGFEVYRPTLEEIILLGFERKTQIIY   76 (248)
T ss_dssp             CCCTTCEEEEEETTEEEEEECCTTCEEEETTEEEEGGGTTTCCT------TEEETTEEEECCCHHHHHHHTSCCSSCCCC
T ss_pred             cCCCCCEEEEEeCCeEEEEEEcCCCEEecCCceEEHHHhcCCCC------CCEEEEEEEeCCCHHHHHHhcCcCCCCccc
Confidence            389999999987       678899999998888888643 222      222223333322222222111122222222


Q ss_pred             hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCC-CEEEeCCCCcccH
Q 048013           80 PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGA-DNIVKVSTNLQDI  154 (216)
Q Consensus        80 ~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~-~~~~~~~~~~~~~  154 (216)
                      +... .+.+....++++++||.+|+| .|..++.+++. +. +++++|.+++..+.+++    .+. ..+.....   ++
T Consensus        77 ~~~~-~~~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~  149 (248)
T 2yvl_A           77 PKDS-FYIALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AG-EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNV---DF  149 (248)
T ss_dssp             HHHH-HHHHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECS---CT
T ss_pred             chhH-HHHHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CC-EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEc---Ch
Confidence            3322 355567778899999999998 58888888888 65 69999999988877755    343 22211111   11


Q ss_pred             HHHHHHHHHH-cCCCccEEEEcCCCH-HHHHHHHHHhhcCCEEEEecc
Q 048013          155 AEEVEKIQKA-MGTGIDVSFDCAGFN-KTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       155 ~~~~~~~~~~-~~~~~d~vi~~~g~~-~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      .+    .  . .+.++|+|+...+.+ ..++.+.+.|+|+|++++.-.
T Consensus       150 ~~----~--~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          150 KD----A--EVPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             TT----S--CCCTTCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred             hh----c--ccCCCcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            11    0  1 235799999988875 677899999999999987753

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.12  E-value=2.3e-12  Score=107.42  Aligned_cols=169  Identities=15%  Similarity=0.212  Sum_probs=116.9

Q ss_pred             CCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchhh
Q 048013            2 VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL   81 (216)
Q Consensus         2 vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~   81 (216)
                      +|++++++.+|+++++.....+   .                ......|++++|+..+...++.+|++++.+.++...+.
T Consensus        88 v~~Glds~~vGe~~Il~qvk~~---~----------------~~~~~~G~~~~~~~~~~~~a~~~~k~v~~~~~~~~~~~  148 (404)
T 1gpj_A           88 VASGLESMMVGEQEILRQVKKA---Y----------------DRAARLGTLDEALKIVFRRAINLGKRAREETRISEGAV  148 (404)
T ss_dssp             HHTTTTSSSTTCHHHHHHHHHH---H----------------HHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSTTCSCC
T ss_pred             eccCCCCCcCCcchhHHHHHHH---H----------------HHHHHcCCchHHHHHHHHHHhhhhccCcchhhhcCCCc
Confidence            5778888999998754210000   0                00012367888888888888888888877776665677


Q ss_pred             HHHHHHHHHcC----CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHH-HHHHHcCCCEEEeCCCCcccHHH
Q 048013           82 SVGVHACRRAN----IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRL-SVAKKLGADNIVKVSTNLQDIAE  156 (216)
Q Consensus        82 ~~a~~~l~~~~----~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~  156 (216)
                      +++|++++...    ..++++|+|+|+|++|.++++.++..|+.+|++++++.++. +.++++|.. .+.+    .++  
T Consensus       149 s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~-~~~~----~~l--  221 (404)
T 1gpj_A          149 SIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE-AVRF----DEL--  221 (404)
T ss_dssp             SHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE-ECCG----GGH--
T ss_pred             cHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc-eecH----HhH--
Confidence            78888774422    35899999999999999999999999996799999999886 677888875 2221    122  


Q ss_pred             HHHHHHHHcCCCccEEEEcCCCHHHH--HHHHHH--h--hcCCEEEEeccCC
Q 048013          157 EVEKIQKAMGTGIDVSFDCAGFNKTM--STALSA--T--RAGGKVCLVGMGH  202 (216)
Q Consensus       157 ~~~~~~~~~~~~~d~vi~~~g~~~~~--~~~~~~--l--~~~G~~v~~g~~~  202 (216)
                        .+..    .++|+||++++....+  ...+..  +  ++++.++++++..
T Consensus       222 --~~~l----~~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~  267 (404)
T 1gpj_A          222 --VDHL----ARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIAN  267 (404)
T ss_dssp             --HHHH----HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred             --HHHh----cCCCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEccC
Confidence              2221    2699999999974332  244554  4  5577777777644

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.94  E-value=1.2e-09  Score=89.61  Aligned_cols=96  Identities=21%  Similarity=0.299  Sum_probs=73.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCE--EEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADN--IVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      +++|+|+|+|++|+++++.++.+|+ +|++++++.++.+.+++++...  +...  ...+    +.+..    .++|++|
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~~~~~~~~--~~~~----~~~~~----~~~DvVI  235 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYS--NSAE----IETAV----AEADLLI  235 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEEC--CHHH----HHHHH----HTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCceeEeeeC--CHHH----HHHHH----cCCCEEE
Confidence            4899999999999999999999999 6999999999998887765443  2221  1122    22211    2699999


Q ss_pred             EcCCCHHH------HHHHHHHhhcCCEEEEeccCC
Q 048013          174 DCAGFNKT------MSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       174 ~~~g~~~~------~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      ++++.+..      .+..++.|+++|+++.++...
T Consensus       236 ~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~~~  270 (361)
T 1pjc_A          236 GAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQ  270 (361)
T ss_dssp             ECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTT
T ss_pred             ECCCcCCCCCCeecCHHHHhhCCCCCEEEEEecCC
Confidence            99987431      567788999999999999754

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.84  E-value=1.3e-08  Score=86.38  Aligned_cols=112  Identities=18%  Similarity=0.231  Sum_probs=85.6

Q ss_pred             HHHHHHHHcC--CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHH
Q 048013           83 VGVHACRRAN--IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        83 ~a~~~l~~~~--~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  160 (216)
                      +.|++++...  ..+|++|+|+|+|.+|..+++.++.+|+ +|++++++.++.+.++++|++ +.       +..    +
T Consensus       259 s~~~g~~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~~Ga~-~~-------~l~----e  325 (494)
T 3ce6_A          259 SLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMMEGFD-VV-------TVE----E  325 (494)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-EC-------CHH----H
T ss_pred             hhhHHHHhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCE-Ee-------cHH----H
Confidence            4566664433  6789999999999999999999999999 599999999998888888875 21       111    1


Q ss_pred             HHHHcCCCccEEEEcCCCHHHHH-HHHHHhhcCCEEEEeccCCCCCcccchhhh
Q 048013          161 IQKAMGTGIDVSFDCAGFNKTMS-TALSATRAGGKVCLVGMGHREMTVPLTPAA  213 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  213 (216)
                      +    -.++|+|+++++....+. ..++.|+++|+++.+|....  +++...++
T Consensus       326 ~----l~~aDvVi~atgt~~~i~~~~l~~mk~ggilvnvG~~~~--eId~~aL~  373 (494)
T 3ce6_A          326 A----IGDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDN--EIDMAGLE  373 (494)
T ss_dssp             H----GGGCSEEEECSSSSCSBCHHHHHHSCTTCEEEECSSSGG--GBCHHHHH
T ss_pred             H----HhCCCEEEECCCCHHHHHHHHHHhcCCCcEEEEeCCCCC--ccCHHHHH
Confidence            1    136999999999865554 78899999999999996442  34444443

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.82  E-value=1.4e-08  Score=83.74  Aligned_cols=98  Identities=13%  Similarity=0.249  Sum_probs=74.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      ++++|+|+|+|.+|+++++.++.+|+ +|++++++.++.+.+++ +|......+. ...+    +.+..    .++|++|
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~~~~~~~~-~~~~----l~~~l----~~aDvVi  236 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCGRIHTRYS-SAYE----LEGAV----KRADLVI  236 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSSEEEEC-CHHH----HHHHH----HHCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCCeeEeccC-CHHH----HHHHH----cCCCEEE
Confidence            57899999999999999999999999 59999999999888766 7765322211 1122    22222    2589999


Q ss_pred             EcCCCHHH------HHHHHHHhhcCCEEEEeccCC
Q 048013          174 DCAGFNKT------MSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       174 ~~~g~~~~------~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      ++++.+..      .+..++.|+++|+++.+|...
T Consensus       237 ~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va~~~  271 (377)
T 2vhw_A          237 GAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIAIDQ  271 (377)
T ss_dssp             ECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGGGGT
T ss_pred             ECCCcCCCCCcceecHHHHhcCCCCcEEEEEecCC
Confidence            99986432      577888999999999999643

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.80  E-value=3e-08  Score=81.53  Aligned_cols=98  Identities=21%  Similarity=0.329  Sum_probs=70.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      ++++|+|+|+|++|+.+++.++.+|+ +|++++++.++.+.+++ ++.....+. ....+    +.+..    .++|++|
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~~~~~~~-~~~~~----l~~~~----~~~DvVi  234 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGGRVITLT-ATEAN----IKKSV----QHADLLI  234 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSEEEEE-CCHHH----HHHHH----HHCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCceEEEec-CCHHH----HHHHH----hCCCEEE
Confidence            46899999999999999999999999 59999999998887765 776632222 11122    32222    2699999


Q ss_pred             EcCCCHHH------HHHHHHHhhcCCEEEEeccCC
Q 048013          174 DCAGFNKT------MSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       174 ~~~g~~~~------~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      ++++.+..      .+..++.|+++|+++.+|...
T Consensus       235 ~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~~  269 (369)
T 2eez_A          235 GAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVDQ  269 (369)
T ss_dssp             ECCC-------CCSCHHHHTTSCTTCEEEECC---
T ss_pred             ECCCCCccccchhHHHHHHHhhcCCCEEEEEecCC
Confidence            99997431      577889999999999999654

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.70  E-value=6.5e-09  Score=74.06  Aligned_cols=108  Identities=11%  Similarity=0.080  Sum_probs=78.1

Q ss_pred             hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHH-HHHcCCCEEEeCCCCcccHHHHH
Q 048013           80 PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV-AKKLGADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        80 ~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~  158 (216)
                      ++++++++++......+++++|+|+|.+|...++.++..|++ |++.+++.++.+. +++++.... ..    .+..+.+
T Consensus         5 ~~sv~~~a~~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r~~~~~~~~a~~~~~~~~-~~----~~~~~~~   78 (144)
T 3oj0_A            5 KVSIPSIVYDIVRKNGGNKILLVGNGMLASEIAPYFSYPQYK-VTVAGRNIDHVRAFAEKYEYEYV-LI----NDIDSLI   78 (144)
T ss_dssp             CCSHHHHHHHHHHHHCCCEEEEECCSHHHHHHGGGCCTTTCE-EEEEESCHHHHHHHHHHHTCEEE-EC----SCHHHHH
T ss_pred             cccHHHHHHHHHHhccCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCCHHHHHHHHHHhCCceE-ee----cCHHHHh
Confidence            566778887665555699999999999999999999889986 9999999888664 567775322 22    1222221


Q ss_pred             HHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          159 EKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                              .++|+||.+++...... ....+++++.++.+|.+.
T Consensus        79 --------~~~Divi~at~~~~~~~-~~~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           79 --------KNNDVIITATSSKTPIV-EERSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             --------HTCSEEEECSCCSSCSB-CGGGCCTTCEEEECCSSC
T ss_pred             --------cCCCEEEEeCCCCCcEe-eHHHcCCCCEEEEccCCc
Confidence                    25899999999743221 225678899999998754

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.66  E-value=5.5e-08  Score=80.41  Aligned_cols=103  Identities=23%  Similarity=0.310  Sum_probs=74.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEE-EeCCCC-------------ccc----HHH
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNI-VKVSTN-------------LQD----IAE  156 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~-~~~~~~-------------~~~----~~~  156 (216)
                      ++++|+|+|+|.+|+++++.++.+|++ |++++++.++.+.++++|+..+ ++....             .++    ..+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~-V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~  249 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAV-VMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  249 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence            689999999999999999999999995 9999999998888888987643 111000             000    111


Q ss_pred             HHHHHHHHcCCCccEEEEcC---CCHH--H-HHHHHHHhhcCCEEEEeccCC
Q 048013          157 EVEKIQKAMGTGIDVSFDCA---GFNK--T-MSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       157 ~~~~~~~~~~~~~d~vi~~~---g~~~--~-~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      .+.+.    -.++|++|+++   |.+.  . .+..++.|+++++++.++...
T Consensus       250 ~l~~~----~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~  297 (384)
T 1l7d_A          250 AVLKE----LVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEA  297 (384)
T ss_dssp             HHHHH----HTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGG
T ss_pred             HHHHH----hCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCC
Confidence            13332    13699999999   5312  2 367889999999999999643

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.61  E-value=9.6e-08  Score=79.32  Aligned_cols=101  Identities=19%  Similarity=0.280  Sum_probs=73.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCC-------------cccH----HHH
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTN-------------LQDI----AEE  157 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~-------------~~~~----~~~  157 (216)
                      ++++|+|+|+|.+|+++++.++.+|+ +|+++|++.++.+.++++|+..+. ++..             ..++    .+.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~~~lGa~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~  248 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLE-LDFKEEAGSGDGYAKVMSDAFIKAEMEL  248 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGGGHHHHHHTTCEECC-C--------CCHHHHHHSHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCEEEE-ecccccccccccchhhccHHHHHHHHHH
Confidence            57899999999999999999999999 599999999998888889876431 1110             0111    011


Q ss_pred             HHHHHHHcCCCccEEEEcCCCH-----H-HHHHHHHHhhcCCEEEEeccC
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFN-----K-TMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~-----~-~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      +.+..    .++|++|++++.+     . ..+..++.|+++++++.++..
T Consensus       249 l~e~~----~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~  294 (401)
T 1x13_A          249 FAAQA----KEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQ  294 (401)
T ss_dssp             HHHHH----HHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGG
T ss_pred             HHHHh----CCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCC
Confidence            22221    2699999995321     2 236788999999999999964

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.53  E-value=2.7e-07  Score=72.69  Aligned_cols=103  Identities=17%  Similarity=0.254  Sum_probs=72.6

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHHH----cCC-CEEEeCCCCcccHHHHHHH
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAKK----LGA-DNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~~----~g~-~~~~~~~~~~~~~~~~~~~  160 (216)
                      .+....+.++++||.+|+|. |..++.+++..+ ..+++++|.+++..+.+++    .+. ..+.....   ++.+.   
T Consensus       104 i~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~---  176 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVR---DISEG---  176 (277)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECC---CGGGC---
T ss_pred             HHHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEEC---CHHHc---
Confidence            34666788999999999876 888888888854 3369999999988777654    354 22222111   22111   


Q ss_pred             HHHHcCCCccEEEEcCCCH-HHHHHHHHHhhcCCEEEEec
Q 048013          161 IQKAMGTGIDVSFDCAGFN-KTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~-~~~~~~~~~l~~~G~~v~~g  199 (216)
                      +   ....+|+|+.....+ ..++.+.+.|+|+|++++..
T Consensus       177 ~---~~~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          177 F---DEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             C---SCCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             c---cCCccCEEEECCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence            1   234699999877764 67788999999999998765

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.49  E-value=5.6e-08  Score=76.13  Aligned_cols=95  Identities=20%  Similarity=0.145  Sum_probs=68.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .++.+||.+|+|. |..+..+++.. +. .++++|.+++..+.+++......+...+ ..+       + ......+|+|
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d-~~~-------~-~~~~~~fD~v  152 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVAS-SHR-------L-PFSDTSMDAI  152 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECC-TTS-------C-SBCTTCEEEE
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHhCCCcEEEEcc-hhh-------C-CCCCCceeEE
Confidence            6788999999987 88888898876 56 5999999999999887765432222111 111       0 0123479999


Q ss_pred             EEcCCCHHHHHHHHHHhhcCCEEEEecc
Q 048013          173 FDCAGFNKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       173 i~~~g~~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      +..... ..++.+.+.|+|+|++++...
T Consensus       153 ~~~~~~-~~l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          153 IRIYAP-CKAEELARVVKPGGWVITATP  179 (269)
T ss_dssp             EEESCC-CCHHHHHHHEEEEEEEEEEEE
T ss_pred             EEeCCh-hhHHHHHHhcCCCcEEEEEEc
Confidence            965443 678899999999999987753

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=98.47  E-value=1.4e-06  Score=68.48  Aligned_cols=108  Identities=27%  Similarity=0.324  Sum_probs=77.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHH-HHHcCCCEE-EeCC-CCcccHHHHHHHHHHHcCCCc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSV-AKKLGADNI-VKVS-TNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~-~~~~g~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      -+|+++||.|+ +++|.++++.+...|++ |+++++++++++. +++++.... +..| .+.++..+.+.++.+..| ++
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga~-V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G-~i  104 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGAR-VFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAG-RI  104 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHS-CE
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcC-CC
Confidence            47899999996 89999999999999995 9999999988765 466775432 2222 223344444555544443 79


Q ss_pred             cEEEEcCCCH-------------------------HHHHHHHHHhhcCCEEEEeccCCC
Q 048013          170 DVSFDCAGFN-------------------------KTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       170 d~vi~~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      |++++++|..                         ...+.+++.|+.+|+++.++....
T Consensus       105 DiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~  163 (273)
T 4fgs_A          105 DVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAG  163 (273)
T ss_dssp             EEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGG
T ss_pred             CEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhh
Confidence            9999999852                         134667778888899999875443

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.47  E-value=5.2e-07  Score=73.90  Aligned_cols=106  Identities=18%  Similarity=0.230  Sum_probs=75.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCC---Cccc---------HHHHHHHHH
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVST---NLQD---------IAEEVEKIQ  162 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~---------~~~~~~~~~  162 (216)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|++.|++.++++.++++|.+.+. .+.   ....         .......+.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~lGa~~~~-l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRSVGAQWLD-LGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHHTTCEECC-CC-------------CHHHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEe-ccccccccccchhhhhHHHHhhhHHHHH
Confidence            67899999999999999999999999 599999999999999999876321 100   0000         011111121


Q ss_pred             HHcCCCccEEEEcCCCH-----H-HHHHHHHHhhcCCEEEEeccCCC
Q 048013          163 KAMGTGIDVSFDCAGFN-----K-TMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~~-----~-~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      + .-...|+||.++..+     . ..+..++.|++++.++.++...+
T Consensus       261 e-~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~G  306 (381)
T 3p2y_A          261 D-AITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETG  306 (381)
T ss_dssp             H-HHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGT
T ss_pred             H-HHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCC
Confidence            1 225799999986332     1 34789999999999999986544

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.46  E-value=3.1e-07  Score=75.82  Aligned_cols=103  Identities=22%  Similarity=0.280  Sum_probs=74.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEe-------------CCC-CcccH----HH
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVK-------------VST-NLQDI----AE  156 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~-------------~~~-~~~~~----~~  156 (216)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|++.|++.++++.++++|...+..             |.. ..+.+    .+
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~  267 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA  267 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence            57899999999999999999999999 5999999999999999988753211             000 00011    11


Q ss_pred             HHHHHHHHcCCCccEEEEcCCCHH------HHHHHHHHhhcCCEEEEeccCC
Q 048013          157 EVEKIQKAMGTGIDVSFDCAGFNK------TMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       157 ~~~~~~~~~~~~~d~vi~~~g~~~------~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      .+.+.    -.+.|+||.++..+.      ..+..++.|+++..++.++...
T Consensus       268 ~l~e~----l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~  315 (405)
T 4dio_A          268 LVAEH----IAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVER  315 (405)
T ss_dssp             HHHHH----HHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGG
T ss_pred             HHHHH----hcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCC
Confidence            22222    247999999964321      3478999999999999998633

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.46  E-value=1.2e-06  Score=69.55  Aligned_cols=99  Identities=18%  Similarity=0.323  Sum_probs=72.1

Q ss_pred             HcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHc
Q 048013           90 RANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        90 ~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      ..+++++++||.+|+|+.+..++.+++..|+ +|+++|.+++..+.+++    .|...+.....   +..    ++   .
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~g---Da~----~l---~  185 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGLGVDGVNVITG---DET----VI---D  185 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHHHHHHTCCSEEEEES---CGG----GG---G
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEC---chh----hC---C
Confidence            3678999999999998766777777887888 59999999998877755    35533322211   211    11   2


Q ss_pred             CCCccEEEEcCCCH---HHHHHHHHHhhcCCEEEEec
Q 048013          166 GTGIDVSFDCAGFN---KTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       166 ~~~~d~vi~~~g~~---~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ...||+|+.....+   ..++.+.+.|+|+|++++..
T Consensus       186 d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          186 GLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             GCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CCCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEc
Confidence            46799999765542   57789999999999999765

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.38  E-value=3.5e-06  Score=57.08  Aligned_cols=96  Identities=21%  Similarity=0.248  Sum_probs=64.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      ...+|+|+|+|.+|..+++.+...|...|+++++++++.+.+...+..... .+..  +. +.+.+.    -.++|++|+
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~-~d~~--~~-~~~~~~----~~~~d~vi~   75 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQ-VDAK--DE-AGLAKA----LGGFDAVIS   75 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEE-CCTT--CH-HHHHHH----TTTCSEEEE
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEE-ecCC--CH-HHHHHH----HcCCCEEEE
Confidence            356899999999999999999999933599999999988877765654432 2211  21 223332    137999999


Q ss_pred             cCCCHHHHHHHHHHh-hcCCEEEEec
Q 048013          175 CAGFNKTMSTALSAT-RAGGKVCLVG  199 (216)
Q Consensus       175 ~~g~~~~~~~~~~~l-~~~G~~v~~g  199 (216)
                      +++... .......+ +.+..++.++
T Consensus        76 ~~~~~~-~~~~~~~~~~~g~~~~~~~  100 (118)
T 3ic5_A           76 AAPFFL-TPIIAKAAKAAGAHYFDLT  100 (118)
T ss_dssp             CSCGGG-HHHHHHHHHHTTCEEECCC
T ss_pred             CCCchh-hHHHHHHHHHhCCCEEEec
Confidence            998733 34444444 4555555443

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.35  E-value=2.4e-06  Score=61.36  Aligned_cols=93  Identities=17%  Similarity=0.193  Sum_probs=64.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-HcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccE
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      ..++++|+|+|+|.+|..+++.++..|. .|+++++++++.+.++ +.+... +..+.  .+ .+.+.+   ....++|+
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~g~~~-~~~d~--~~-~~~l~~---~~~~~ad~   87 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEFSGFT-VVGDA--AE-FETLKE---CGMEKADM   87 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTTCCSEE-EESCT--TS-HHHHHT---TTGGGCSE
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhcCCCcE-EEecC--CC-HHHHHH---cCcccCCE
Confidence            4567899999999999999999999998 5999999988877665 566543 22211  12 122222   12347999


Q ss_pred             EEEcCCCHHHHHHHHHHhhc-CC
Q 048013          172 SFDCAGFNKTMSTALSATRA-GG  193 (216)
Q Consensus       172 vi~~~g~~~~~~~~~~~l~~-~G  193 (216)
                      +|.+++.......+...++. .+
T Consensus        88 Vi~~~~~~~~~~~~~~~~~~~~~  110 (155)
T 2g1u_A           88 VFAFTNDDSTNFFISMNARYMFN  110 (155)
T ss_dssp             EEECSSCHHHHHHHHHHHHHTSC
T ss_pred             EEEEeCCcHHHHHHHHHHHHHCC
Confidence            99999996665666666654 44

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.34  E-value=2.1e-06  Score=68.24  Aligned_cols=99  Identities=14%  Similarity=0.160  Sum_probs=73.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      --.+++++|+|+|.+|..+++.++.+|+ +|++.+++.++.+.++++|...+ ..    .+    +.++    -...|+|
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-~~----~~----l~~~----l~~aDvV  217 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGMEPF-HI----SK----AAQE----LRDVDVC  217 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTSEEE-EG----GG----HHHH----TTTCSEE
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHCCCeec-Ch----hh----HHHH----hcCCCEE
Confidence            3478999999999999999999999999 59999999888777777776532 21    12    2222    2369999


Q ss_pred             EEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCC
Q 048013          173 FDCAGFNKTMSTALSATRAGGKVCLVGMGHREM  205 (216)
Q Consensus       173 i~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~  205 (216)
                      +.+++........+..|++++.++.++..+...
T Consensus       218 i~~~p~~~i~~~~l~~mk~~~~lin~ar~~~~~  250 (293)
T 3d4o_A          218 INTIPALVVTANVLAEMPSHTFVIDLASKPGGT  250 (293)
T ss_dssp             EECCSSCCBCHHHHHHSCTTCEEEECSSTTCSB
T ss_pred             EECCChHHhCHHHHHhcCCCCEEEEecCCCCCC
Confidence            999986222245778899999999998644333

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=98.34  E-value=2.2e-05  Score=60.78  Aligned_cols=106  Identities=16%  Similarity=0.172  Sum_probs=71.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCE-EEeCC-CCcccHHHHHHHHHHHcCCCccEE
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADN-IVKVS-TNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      ++++||+|+ +++|.++++.+...|++ |+++++++++.+.+.+-+... .+..+ .+.++..+.+.+..+.. +++|++
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~-V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~-g~iDiL   79 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDK-VCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKL-QRIDVL   79 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHH-SCCCEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence            378999986 89999999999999995 999999998877665544332 22222 22334444455544434 379999


Q ss_pred             EEcCCCH-------------------------HHHHHHHHHh-hcCCEEEEeccCCC
Q 048013          173 FDCAGFN-------------------------KTMSTALSAT-RAGGKVCLVGMGHR  203 (216)
Q Consensus       173 i~~~g~~-------------------------~~~~~~~~~l-~~~G~~v~~g~~~~  203 (216)
                      ++++|..                         ...+.+++.| +.+|+++.++....
T Consensus        80 VNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~  136 (247)
T 3ged_A           80 VNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRA  136 (247)
T ss_dssp             EECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred             EECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            9999741                         1235566666 45799999875443

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=98.30  E-value=2.9e-05  Score=60.39  Aligned_cols=107  Identities=18%  Similarity=0.210  Sum_probs=73.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEEE-eCC-CCcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNIV-KVS-TNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~~-~~~-~~~~~~~~~~~~~~~~~~~  167 (216)
                      +|+++||.|+ +++|.++++.+...|++ |+.+++++++.+.+    ++.|..... ..| .+.++..+.+.+..+..| 
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~-Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G-   83 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSI-VVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYS-   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC-
Confidence            6899999996 89999999999999995 99999998876543    345654322 222 233344445555544444 


Q ss_pred             CccEEEEcCCCH--------------------------HHHHHHHHHhh--cCCEEEEeccCCC
Q 048013          168 GIDVSFDCAGFN--------------------------KTMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       168 ~~d~vi~~~g~~--------------------------~~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      ++|++++++|..                          ...+.+++.|.  .+|+++.++....
T Consensus        84 ~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g  147 (254)
T 4fn4_A           84 RIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAG  147 (254)
T ss_dssp             CCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhh
Confidence            799999999831                          13467777774  3689999986444

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.30  E-value=2e-06  Score=71.35  Aligned_cols=104  Identities=19%  Similarity=0.322  Sum_probs=77.4

Q ss_pred             HHHHHH-c-CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHH
Q 048013           85 VHACRR-A-NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        85 ~~~l~~-~-~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  162 (216)
                      ++++.. . ..-.|++++|+|.|.+|..+++.++.+|++ |++++++..+...+...|... .       +    +.++ 
T Consensus       207 ~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~-Viv~D~dp~ra~~A~~~G~~v-~-------~----Leea-  272 (435)
T 3gvp_A          207 LDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSI-VYVTEIDPICALQACMDGFRL-V-------K----LNEV-  272 (435)
T ss_dssp             HHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHTTCEE-C-------C----HHHH-
T ss_pred             HHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEeCChhhhHHHHHcCCEe-c-------c----HHHH-
Confidence            455532 2 346899999999999999999999999995 999999987766666666431 1       1    2222 


Q ss_pred             HHcCCCccEEEEcCCCHHHH-HHHHHHhhcCCEEEEeccCCCCC
Q 048013          163 KAMGTGIDVSFDCAGFNKTM-STALSATRAGGKVCLVGMGHREM  205 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~~~~~-~~~~~~l~~~G~~v~~g~~~~~~  205 (216)
                         -...|+++.|++....+ ...++.|++++.++.+|....++
T Consensus       273 ---l~~ADIVi~atgt~~lI~~e~l~~MK~gailINvgrg~~EI  313 (435)
T 3gvp_A          273 ---IRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEI  313 (435)
T ss_dssp             ---TTTCSEEEECSSCSCSBCHHHHHHSCTTEEEEECSSTTTTB
T ss_pred             ---HhcCCEEEECCCCcccCCHHHHHhcCCCcEEEEecCCCccC
Confidence               23689999998865555 47889999999999998654433

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=98.26  E-value=1.3e-05  Score=62.37  Aligned_cols=108  Identities=17%  Similarity=0.242  Sum_probs=69.9

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----HcCCCE--EEeCC-CCcccHHHHHHHHHHH
Q 048013           95 PETNVLIMGS-G--PIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KLGADN--IVKVS-TNLQDIAEEVEKIQKA  164 (216)
Q Consensus        95 ~~~~vlv~Ga-g--~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~g~~~--~~~~~-~~~~~~~~~~~~~~~~  164 (216)
                      +|+++||+|+ |  ++|.++++.+...|++ |++++++++..+.+.    +++...  .+..| .+.++..+.+.++.+.
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~-Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAK-LVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKD   83 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            6899999995 5  8999999999999995 999999987655443    344322  22222 2233444445554443


Q ss_pred             cCCCccEEEEcCCCH--------------H---------------HHHHHHHHhhcCCEEEEeccCCCC
Q 048013          165 MGTGIDVSFDCAGFN--------------K---------------TMSTALSATRAGGKVCLVGMGHRE  204 (216)
Q Consensus       165 ~~~~~d~vi~~~g~~--------------~---------------~~~~~~~~l~~~G~~v~~g~~~~~  204 (216)
                      . +++|++++++|..              +               ..+...+.++.+|+++.++.....
T Consensus        84 ~-G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~  151 (256)
T 4fs3_A           84 V-GNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGE  151 (256)
T ss_dssp             H-CCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGT
T ss_pred             h-CCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccc
Confidence            3 4799999998731              1               112334455678999998865443

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.23  E-value=5.2e-06  Score=65.17  Aligned_cols=105  Identities=22%  Similarity=0.250  Sum_probs=72.2

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHHHc-----C--CCEEEeCCCCcccHHHHH
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAKKL-----G--ADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~~~-----g--~~~~~~~~~~~~~~~~~~  158 (216)
                      .+....++++++||.+|+| .|..++.+++..+ ..+++++|.+++..+.+++.     |  ...+.....   +..+. 
T Consensus        91 i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~---d~~~~-  165 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS---DLADS-  165 (280)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS---CGGGC-
T ss_pred             HHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEEC---chHhc-
Confidence            3456678899999999988 5888888888753 23699999999887776542     4  332222111   11110 


Q ss_pred             HHHHHHcCCCccEEEEcCCCH-HHHHHHHHHhhcCCEEEEecc
Q 048013          159 EKIQKAMGTGIDVSFDCAGFN-KTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~~l~~~G~~v~~g~  200 (216)
                       .   .....+|+|+.....+ ..++.+.+.|+|+|+++++..
T Consensus       166 -~---~~~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  204 (280)
T 1i9g_A          166 -E---LPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVA  204 (280)
T ss_dssp             -C---CCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             -C---CCCCceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence             0   1234699999877654 677889999999999988753

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=98.23  E-value=3.7e-06  Score=67.10  Aligned_cols=98  Identities=14%  Similarity=0.142  Sum_probs=73.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      -.+++++|+|+|.+|..+++.++.+|+ +|++.+++.++.+.+.++|... +..    .+    +.++    -...|+|+
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~-~~~----~~----l~~~----l~~aDvVi  220 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGLVP-FHT----DE----LKEH----VKDIDICI  220 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCEE-EEG----GG----HHHH----STTCSEEE
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCeE-Ech----hh----HHHH----hhCCCEEE
Confidence            468999999999999999999999999 5999999988877776777542 221    12    2222    24699999


Q ss_pred             EcCCCHHHHHHHHHHhhcCCEEEEeccCCCCC
Q 048013          174 DCAGFNKTMSTALSATRAGGKVCLVGMGHREM  205 (216)
Q Consensus       174 ~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~  205 (216)
                      .+++........+..|++++.++.++..+...
T Consensus       221 ~~~p~~~i~~~~~~~mk~g~~lin~a~g~~~~  252 (300)
T 2rir_A          221 NTIPSMILNQTVLSSMTPKTLILDLASRPGGT  252 (300)
T ss_dssp             ECCSSCCBCHHHHTTSCTTCEEEECSSTTCSB
T ss_pred             ECCChhhhCHHHHHhCCCCCEEEEEeCCCCCc
Confidence            99986222245677899999999998644433

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=98.21  E-value=3.9e-05  Score=59.67  Aligned_cols=107  Identities=21%  Similarity=0.296  Sum_probs=72.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEEEe-CC-CCcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNIVK-VS-TNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~~~-~~-~~~~~~~~~~~~~~~~~~~  167 (216)
                      +|+++||+|+ +++|.++++.+...|++ |++.++++++.+..    ++.|...... .| .+.++..+.+.++.+. .+
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~-Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~-~G   85 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGAR-VILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAE-GI   85 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHT-TC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHH-CC
Confidence            6899999986 89999999999999995 99999998775543    3345443221 11 1223344445555433 34


Q ss_pred             CccEEEEcCCCH-------------------------HHHHHHHHHhh---cCCEEEEeccCCC
Q 048013          168 GIDVSFDCAGFN-------------------------KTMSTALSATR---AGGKVCLVGMGHR  203 (216)
Q Consensus       168 ~~d~vi~~~g~~-------------------------~~~~~~~~~l~---~~G~~v~~g~~~~  203 (216)
                      ++|++++++|..                         ...+.+++.|.   .+|+++.++....
T Consensus        86 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~  149 (255)
T 4g81_D           86 HVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTS  149 (255)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGG
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhh
Confidence            799999999852                         13466777772   4589999986544

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.19  E-value=5.3e-05  Score=55.64  Aligned_cols=96  Identities=18%  Similarity=0.193  Sum_probs=67.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHH-cCCCccEEE
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKA-MGTGIDVSF  173 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~vi  173 (216)
                      +++|+|+|+|.+|..+++.++.. |.+ |+++++++++.+.+++.|...+.. +..+.   +.+.+   . .-.++|++|
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~-V~vid~~~~~~~~~~~~g~~~~~g-d~~~~---~~l~~---~~~~~~ad~vi  110 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKI-SLGIEIREEAAQQHRSEGRNVISG-DATDP---DFWER---ILDTGHVKLVL  110 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSC-EEEEESCHHHHHHHHHTTCCEEEC-CTTCH---HHHHT---BCSCCCCCEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCe-EEEEECCHHHHHHHHHCCCCEEEc-CCCCH---HHHHh---ccCCCCCCEEE
Confidence            56899999999999999999998 996 999999999988888888765432 11111   11221   1 235799999


Q ss_pred             EcCCCHHHHHHHHHHh---hcCCEEEEec
Q 048013          174 DCAGFNKTMSTALSAT---RAGGKVCLVG  199 (216)
Q Consensus       174 ~~~g~~~~~~~~~~~l---~~~G~~v~~g  199 (216)
                      .++++......+...+   .+..+++...
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          111 LAMPHHQGNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             ECCSSHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             EeCCChHHHHHHHHHHHHHCCCCEEEEEE
Confidence            9999855544444444   4455666543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.17  E-value=4.6e-05  Score=53.57  Aligned_cols=96  Identities=11%  Similarity=0.107  Sum_probs=68.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEc
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC  175 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  175 (216)
                      .++++|+|+|.+|..+++.++..|.+ |+++++++++.+.+++.|...+.. +..+++   .+.+   ..-..+|+++.+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~-v~vid~~~~~~~~~~~~g~~~i~g-d~~~~~---~l~~---a~i~~ad~vi~~   78 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIP-LVVIETSRTRVDELRERGVRAVLG-NAANEE---IMQL---AHLECAKWLILT   78 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCC-EEEEESCHHHHHHHHHTTCEEEES-CTTSHH---HHHH---TTGGGCSEEEEC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHHcCCCEEEC-CCCCHH---HHHh---cCcccCCEEEEE
Confidence            46799999999999999999999996 999999999999888887765432 222221   2222   123479999999


Q ss_pred             CCCHHHHH---HHHHHhhcCCEEEEec
Q 048013          176 AGFNKTMS---TALSATRAGGKVCLVG  199 (216)
Q Consensus       176 ~g~~~~~~---~~~~~l~~~G~~v~~g  199 (216)
                      +++.....   ...+.+.++.+++..-
T Consensus        79 ~~~~~~n~~~~~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           79 IPNGYEAGEIVASARAKNPDIEIIARA  105 (140)
T ss_dssp             CSCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred             CCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence            99854332   3444556677766543

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=98.16  E-value=2.4e-05  Score=60.99  Aligned_cols=107  Identities=17%  Similarity=0.207  Sum_probs=67.5

Q ss_pred             CCCEEEEEcC-CH--HHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----HcCC--CEEEeCC-CCcccHHHHHHHHHHH
Q 048013           95 PETNVLIMGS-GP--IGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KLGA--DNIVKVS-TNLQDIAEEVEKIQKA  164 (216)
Q Consensus        95 ~~~~vlv~Ga-g~--~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~g~--~~~~~~~-~~~~~~~~~~~~~~~~  164 (216)
                      .++++||+|+ |.  +|..+++.+...|++ |++++++++..+.++    +++.  -..+..| .+.++..+.+.++.+.
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGAR-LIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            5789999985 55  999999999999995 888888765444333    3333  1222222 2233444455555433


Q ss_pred             cCCCccEEEEcCCCH--------------H---------------HHHHHHHHhhcCCEEEEeccCCC
Q 048013          165 MGTGIDVSFDCAGFN--------------K---------------TMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       165 ~~~~~d~vi~~~g~~--------------~---------------~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      . .++|+++.++|..              +               ..+.+++.++++|+++.++....
T Consensus        85 ~-g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~  151 (266)
T 3oig_A           85 V-GVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGG  151 (266)
T ss_dssp             H-SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGG
T ss_pred             h-CCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccc
Confidence            3 3799999998731              1               22344555666899999885444

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=98.16  E-value=3.6e-05  Score=59.94  Aligned_cols=105  Identities=12%  Similarity=0.101  Sum_probs=68.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHH-HHHHHcCCCEEEeCC-CCcccHHHHHHHHHHHcCCCccE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRL-SVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      .++++||+|+ |++|.++++.+...|++ |+++++++++. +.+++.+...+ ..+ .+.++..+.+.++.+.. .++|+
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~-~~Dv~~~~~v~~~~~~~~~~~-g~iD~  102 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGHR-VIISYRTEHASVTELRQAGAVAL-YGDFSCETGIMAFIDLLKTQT-SSLRA  102 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTCC-EEEEESSCCHHHHHHHHHTCEEE-ECCTTSHHHHHHHHHHHHHHC-SCCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHhcCCeEE-ECCCCCHHHHHHHHHHHHHhc-CCCCE
Confidence            4688999986 89999999999999996 88888887653 44555664332 222 22233444455544333 47999


Q ss_pred             EEEcCCCH---------H---------------HHHHHHHHhhc--CCEEEEeccCC
Q 048013          172 SFDCAGFN---------K---------------TMSTALSATRA--GGKVCLVGMGH  202 (216)
Q Consensus       172 vi~~~g~~---------~---------------~~~~~~~~l~~--~G~~v~~g~~~  202 (216)
                      +++++|..         +               ..+.+++.|..  .|+++.++...
T Consensus       103 lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~  159 (260)
T 3gem_A          103 VVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDV  159 (260)
T ss_dssp             EEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGG
T ss_pred             EEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChh
Confidence            99999831         1               23445555554  38999887543

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=98.15  E-value=7.8e-05  Score=57.65  Aligned_cols=108  Identities=13%  Similarity=0.210  Sum_probs=69.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-Hc----C-CCEEEeCCC--C-cccHHHHHHHHHH
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KL----G-ADNIVKVST--N-LQDIAEEVEKIQK  163 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~----g-~~~~~~~~~--~-~~~~~~~~~~~~~  163 (216)
                      -.++++||+|+ |++|.++++.+...|++ |+++++++++.+.+. ++    + ....+..+-  . .++..+.+.++.+
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGAT-VILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAV   88 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHH
Confidence            35789999996 89999999999999995 999999987765432 22    2 222222222  2 2233344444433


Q ss_pred             HcCCCccEEEEcCCCH--------------------------HHHHHHHHHhh--cCCEEEEeccCCC
Q 048013          164 AMGTGIDVSFDCAGFN--------------------------KTMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~~--------------------------~~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      . ..++|++|+++|..                          ...+.+++.|.  ..|+++.++....
T Consensus        89 ~-~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~  155 (252)
T 3f1l_A           89 N-YPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVG  155 (252)
T ss_dssp             H-CSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGG
T ss_pred             h-CCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhh
Confidence            3 34799999999841                          02355666663  4589999875443

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=98.14  E-value=2e-05  Score=61.14  Aligned_cols=108  Identities=17%  Similarity=0.259  Sum_probs=70.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEE-EeCCC-CcccHHHHHHHHHHHcCCCc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNI-VKVST-NLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~  169 (216)
                      -.++++||+|+ |++|.++++.+...|++ |+++++++++.+.+ ++++.... +..+- +.++..+.+.++.+.. +++
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~i   83 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVEGGAE-VLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTL-GAI   83 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHH-SSE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHh-CCC
Confidence            36789999996 89999999999999995 99999998887654 44544322 22222 2223333444443333 479


Q ss_pred             cEEEEcCCCH----------H---------------HHHHHHHHhhcCCEEEEeccCCC
Q 048013          170 DVSFDCAGFN----------K---------------TMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       170 d~vi~~~g~~----------~---------------~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      |++++++|..          +               ..+.+++.++.+|+++.++....
T Consensus        84 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~  142 (255)
T 4eso_A           84 DLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVAD  142 (255)
T ss_dssp             EEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGG
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhh
Confidence            9999998741          1               22444455566899999886443

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.14  E-value=4.9e-06  Score=70.16  Aligned_cols=92  Identities=16%  Similarity=0.276  Sum_probs=71.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      -.|++++|+|+|++|..+++.++.+|+ +|+++++++.+...+...+.+ +...    +       +    .-..+|+++
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~~g~d-v~~l----e-------e----~~~~aDvVi  325 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDPICALQATMEGLQ-VLTL----E-------D----VVSEADIFV  325 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECCG----G-------G----TTTTCSEEE
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhCCc-cCCH----H-------H----HHHhcCEEE
Confidence            579999999999999999999999999 599999998887777666653 1111    1       1    134699999


Q ss_pred             EcCCCHHHH-HHHHHHhhcCCEEEEeccCC
Q 048013          174 DCAGFNKTM-STALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       174 ~~~g~~~~~-~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +++|..+.+ ...++.|++++.++..|...
T Consensus       326 ~atG~~~vl~~e~l~~mk~gaiVvNaG~~~  355 (488)
T 3ond_A          326 TTTGNKDIIMLDHMKKMKNNAIVCNIGHFD  355 (488)
T ss_dssp             ECSSCSCSBCHHHHTTSCTTEEEEESSSTT
T ss_pred             eCCCChhhhhHHHHHhcCCCeEEEEcCCCC
Confidence            999975544 44788899999999999653

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=98.13  E-value=3.4e-05  Score=60.28  Aligned_cols=106  Identities=17%  Similarity=0.189  Sum_probs=67.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCC-CCcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+..-.. ..+..+ .+.++..+.+.++.+.. +++|++
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~~~~~~-g~iD~l   91 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGHP-LLLLARRVERLKALNLPNT-LCAQVDVTDKYTFDTAITRAEKIY-GPADAI   91 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCC-EEEEESCHHHHHTTCCTTE-EEEECCTTCHHHHHHHHHHHHHHH-CSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHhhcCCc-eEEEecCCCHHHHHHHHHHHHHHC-CCCCEE
Confidence            4688999996 89999999999999996 8999998776554321111 122222 22233444444444333 379999


Q ss_pred             EEcCCCH----------H---------------HHHHHHHHhh--cCCEEEEeccCCC
Q 048013          173 FDCAGFN----------K---------------TMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       173 i~~~g~~----------~---------------~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      |+++|..          +               ..+.+++.|.  ..|+++.++....
T Consensus        92 vnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~  149 (266)
T 3p19_A           92 VNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAG  149 (266)
T ss_dssp             EECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGG
T ss_pred             EECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhh
Confidence            9999841          1               2244555553  4589999986443

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.13  E-value=5.8e-06  Score=66.88  Aligned_cols=106  Identities=24%  Similarity=0.280  Sum_probs=68.0

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHHHHc----C-----------CCEEEeCCCC
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVAKKL----G-----------ADNIVKVSTN  150 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~~~~----g-----------~~~~~~~~~~  150 (216)
                      .++...+.++++||.+|+|. |..++.+++..|. ..|+++|.+++..+.+++.    +           ...+..... 
T Consensus        97 ~l~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~-  174 (336)
T 2b25_A           97 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK-  174 (336)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES-
T ss_pred             HHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC-
Confidence            34555788999999999876 7788888887664 4799999999887776542    1           122211111 


Q ss_pred             cccHHHHHHHHHHHcCCCccEEEEcCCCH-HHHHHHHHHhhcCCEEEEec
Q 048013          151 LQDIAEEVEKIQKAMGTGIDVSFDCAGFN-KTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~~l~~~G~~v~~g  199 (216)
                        +..+....+   ....+|+|+.....+ ..+..+.+.|+|+|++++..
T Consensus       175 --d~~~~~~~~---~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~  219 (336)
T 2b25_A          175 --DISGATEDI---KSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV  219 (336)
T ss_dssp             --CTTCCC----------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred             --ChHHccccc---CCCCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence              111111111   123599998766653 45788999999999999765

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=98.11  E-value=6.3e-05  Score=57.60  Aligned_cols=106  Identities=13%  Similarity=0.159  Sum_probs=68.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCE-EEeCC-CCcccHHHHHHHHHHHcCCCccE
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADN-IVKVS-TNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      ++++||+|+ |++|.++++.+...|++ |+++++++++.+.+ ++++... .+..| .+.++..+.+.++.+.. +++|+
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-g~id~   80 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQ-VSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWG-GLPEL   80 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHH-CSCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhc-CCCcE
Confidence            578999996 89999999999999995 99999998876654 3343321 12222 12233444444444333 47999


Q ss_pred             EEEcCCCH----------H---------------HHHHHHHHhh-cCCEEEEeccCCC
Q 048013          172 SFDCAGFN----------K---------------TMSTALSATR-AGGKVCLVGMGHR  203 (216)
Q Consensus       172 vi~~~g~~----------~---------------~~~~~~~~l~-~~G~~v~~g~~~~  203 (216)
                      +++++|..          +               ..+.+++.|. .+|+++.++....
T Consensus        81 lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~  138 (235)
T 3l6e_A           81 VLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAA  138 (235)
T ss_dssp             EEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEEC
T ss_pred             EEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHh
Confidence            99998841          1               2355566664 4568888875443

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.11  E-value=1.1e-05  Score=67.13  Aligned_cols=93  Identities=16%  Similarity=0.185  Sum_probs=71.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .-.|++++|+|.|.+|..+++.++.+|+ +|++++++..+...+...|... .       +    +.++.    ...|++
T Consensus       244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~~A~~~G~~v-v-------~----LeElL----~~ADIV  306 (464)
T 3n58_A          244 MMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICALQAAMDGFEV-V-------T----LDDAA----STADIV  306 (464)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCEE-C-------C----HHHHG----GGCSEE
T ss_pred             cccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhhHHHhcCcee-c-------c----HHHHH----hhCCEE
Confidence            4689999999999999999999999999 5999998887655555556532 1       1    12221    258999


Q ss_pred             EEcCCCHHHH-HHHHHHhhcCCEEEEeccCC
Q 048013          173 FDCAGFNKTM-STALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       173 i~~~g~~~~~-~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +.+++....+ ...+..|++++.++.+|-..
T Consensus       307 v~atgt~~lI~~e~l~~MK~GAILINvGRgd  337 (464)
T 3n58_A          307 VTTTGNKDVITIDHMRKMKDMCIVGNIGHFD  337 (464)
T ss_dssp             EECCSSSSSBCHHHHHHSCTTEEEEECSSST
T ss_pred             EECCCCccccCHHHHhcCCCCeEEEEcCCCC
Confidence            9999875444 68889999999999998533

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=98.10  E-value=8.2e-06  Score=62.95  Aligned_cols=103  Identities=17%  Similarity=0.264  Sum_probs=68.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCE-EEeCCCCcccHHHHHHHHHHHcCCCccE
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADN-IVKVSTNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      -+|+++||+|+ +++|.++++.+...|++ |+++++++++++...  +... .+..|-.  + .+.++++.+.. +++|+
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~-Vv~~~~~~~~~~~~~--~~~~~~~~~Dv~--~-~~~v~~~~~~~-g~iDi   81 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAE-VVALGLDADGVHAPR--HPRIRREELDIT--D-SQRLQRLFEAL-PRLDV   81 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSTTSTTSCC--CTTEEEEECCTT--C-HHHHHHHHHHC-SCCSE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHhhhh--cCCeEEEEecCC--C-HHHHHHHHHhc-CCCCE
Confidence            36899999996 89999999999999995 999999887654322  2221 1111111  1 12344443334 47999


Q ss_pred             EEEcCCCH-----------------------HHHHHHHHHhh-cCCEEEEeccCCC
Q 048013          172 SFDCAGFN-----------------------KTMSTALSATR-AGGKVCLVGMGHR  203 (216)
Q Consensus       172 vi~~~g~~-----------------------~~~~~~~~~l~-~~G~~v~~g~~~~  203 (216)
                      +++++|..                       ...+.+++.|+ .+|+++.++....
T Consensus        82 LVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~  137 (242)
T 4b79_A           82 LVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYS  137 (242)
T ss_dssp             EEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGG
T ss_pred             EEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence            99999841                       12356667775 4799999986444

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=98.09  E-value=6.6e-05  Score=58.51  Aligned_cols=106  Identities=13%  Similarity=0.133  Sum_probs=70.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHH---HHHcCCCE-EEeCC-CCcccHHHHHHHHHHHcCCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSV---AKKLGADN-IVKVS-TNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~---~~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~  168 (216)
                      +|+++||+|+ +++|.++++.+...|++ |++.++++++.+.   +.+.+... .+..+ .+.++..+.+.+..+..| +
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga~-Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G-~   83 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERAI-PVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFG-R   83 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHS-C
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhC-C
Confidence            6899999996 89999999999999995 8888887655433   33344432 22222 223344445555544444 7


Q ss_pred             ccEEEEcCCCH------------------------HHHHHHHHHhh-cCCEEEEeccCC
Q 048013          169 IDVSFDCAGFN------------------------KTMSTALSATR-AGGKVCLVGMGH  202 (216)
Q Consensus       169 ~d~vi~~~g~~------------------------~~~~~~~~~l~-~~G~~v~~g~~~  202 (216)
                      +|++++++|..                        ...+.+++.|+ .+|+++.++...
T Consensus        84 iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~  142 (258)
T 4gkb_A           84 LDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKT  142 (258)
T ss_dssp             CCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTH
T ss_pred             CCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehh
Confidence            99999999851                        13466667775 479999998644

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=98.08  E-value=7.8e-05  Score=59.30  Aligned_cols=108  Identities=24%  Similarity=0.326  Sum_probs=69.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      -.++++||+|+ |++|..+++.+...|++ |++++++.++.+.+    +..+... .+..+- +.++..+.+.++.+.. 
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-  106 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGAR-LVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLL-  106 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhC-
Confidence            46789999996 89999999999999995 99999998876544    2234332 222222 2233344444443333 


Q ss_pred             CCccEEEEcCCCH----------H---------------HHHHHHHHhhc---CCEEEEeccCCC
Q 048013          167 TGIDVSFDCAGFN----------K---------------TMSTALSATRA---GGKVCLVGMGHR  203 (216)
Q Consensus       167 ~~~d~vi~~~g~~----------~---------------~~~~~~~~l~~---~G~~v~~g~~~~  203 (216)
                      .++|++|+++|..          +               ..+.+++.+..   +|+++.++....
T Consensus       107 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~  171 (301)
T 3tjr_A          107 GGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAG  171 (301)
T ss_dssp             SSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGG
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhh
Confidence            3799999999831          1               23445555543   579998875444

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=98.07  E-value=6.4e-05  Score=60.32  Aligned_cols=81  Identities=12%  Similarity=0.216  Sum_probs=54.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----HcCC--C-EEEeCCC-CcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KLGA--D-NIVKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~g~--~-~~~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+.    ..+.  . ..+..+- +.+++.+.+.++.+. 
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~~-Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-   84 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGCK-VAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR-   84 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh-
Confidence            5789999996 89999999999999995 999999988765432    2232  2 2222222 223344444444433 


Q ss_pred             CCCccEEEEcCC
Q 048013          166 GTGIDVSFDCAG  177 (216)
Q Consensus       166 ~~~~d~vi~~~g  177 (216)
                      ..++|++|+++|
T Consensus        85 ~g~id~lv~nAg   96 (319)
T 3ioy_A           85 FGPVSILCNNAG   96 (319)
T ss_dssp             TCCEEEEEECCC
T ss_pred             CCCCCEEEECCC
Confidence            347999999998

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=98.05  E-value=0.00016  Score=56.14  Aligned_cols=81  Identities=22%  Similarity=0.290  Sum_probs=54.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-HcCCC-EEEeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KLGAD-NIVKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~g~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+. ++... ..+..+- +.+++.+.+.++.+.. +++|
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~-g~iD   88 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGAT-VAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDAL-GGFD   88 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHH-TCCC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHc-CCCC
Confidence            4789999996 89999999999999995 899999987766543 34321 2222222 2233344444443333 3799


Q ss_pred             EEEEcCC
Q 048013          171 VSFDCAG  177 (216)
Q Consensus       171 ~vi~~~g  177 (216)
                      ++|+++|
T Consensus        89 ~lv~~Ag   95 (263)
T 3ak4_A           89 LLCANAG   95 (263)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999988

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=98.05  E-value=7.7e-05  Score=58.63  Aligned_cols=107  Identities=21%  Similarity=0.290  Sum_probs=70.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .++++||+|+ |++|.++++.+...|++ |+++++++++.+.+ ++++... .+..|- +.++..+.+.++.+.. +++|
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~iD  105 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGCH-VLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAF-GGVD  105 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHH-SSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHc-CCCC
Confidence            5789999986 89999999999999994 99999998876654 4555432 222222 2233344444444333 3799


Q ss_pred             EEEEcCCCH----------H---------------HHHHHHHHh--hcCCEEEEeccCCC
Q 048013          171 VSFDCAGFN----------K---------------TMSTALSAT--RAGGKVCLVGMGHR  203 (216)
Q Consensus       171 ~vi~~~g~~----------~---------------~~~~~~~~l--~~~G~~v~~g~~~~  203 (216)
                      ++++++|..          +               ..+.+++.|  +.+|+++.++....
T Consensus       106 ~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~  165 (277)
T 3gvc_A          106 KLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAG  165 (277)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGG
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhh
Confidence            999999841          1               234555555  34689998875443

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=98.04  E-value=0.00017  Score=55.72  Aligned_cols=107  Identities=15%  Similarity=0.241  Sum_probs=67.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-Hc-----C-C-CEEEeCCC-CcccHHHHHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KL-----G-A-DNIVKVST-NLQDIAEEVEKIQKA  164 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~-----g-~-~~~~~~~~-~~~~~~~~~~~~~~~  164 (216)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+. ++     + . ...+..+- +.++..+.+.++.+.
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            5688999996 8999999999998999 4999999987765442 22     2 1 12222222 223344444454433


Q ss_pred             cCCCccEEEEcCCCH---------H---------------HHHHHHHHhh--cCCEEEEeccCCC
Q 048013          165 MGTGIDVSFDCAGFN---------K---------------TMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       165 ~~~~~d~vi~~~g~~---------~---------------~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      . +++|++|+++|..         +               ..+.+++.|+  ..|+++.++....
T Consensus        85 ~-g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~  148 (250)
T 3nyw_A           85 Y-GAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAA  148 (250)
T ss_dssp             H-CCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC---
T ss_pred             c-CCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHh
Confidence            3 3799999999841         1               2344555553  4689998886443

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.04  E-value=0.00012  Score=57.00  Aligned_cols=107  Identities=20%  Similarity=0.239  Sum_probs=68.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++++++.+.+ ++++... .+..|- +.++..+.+.++.+.. .++|
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-g~iD   82 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGAS-LVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEF-GRLH   82 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHc-CCCc
Confidence            5688999996 89999999999999995 89999998876654 4454322 222221 2233334444443333 3699


Q ss_pred             EEEEcCCCH----------H---------------HHHHHHHHhhcCCEEEEeccCCC
Q 048013          171 VSFDCAGFN----------K---------------TMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       171 ~vi~~~g~~----------~---------------~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      ++|+++|..          +               ..+.+++.++.+|+++.++....
T Consensus        83 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  140 (263)
T 2a4k_A           83 GVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAG  140 (263)
T ss_dssp             EEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTT
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchh
Confidence            999998731          1               12344444533689999986544

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=98.03  E-value=9.4e-05  Score=57.37  Aligned_cols=81  Identities=26%  Similarity=0.333  Sum_probs=54.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-Hc---CCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KL---GADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~---g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|.++++.+...|++ |+++++++++.+.+. ++   +... .+..+- +.++..+.+.++.+.. .
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g   82 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGAR-VVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKF-G   82 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc-C
Confidence            5788999986 89999999999999995 999999988766543 33   3222 222222 2233444444444333 3


Q ss_pred             CccEEEEcCC
Q 048013          168 GIDVSFDCAG  177 (216)
Q Consensus       168 ~~d~vi~~~g  177 (216)
                      ++|++|+++|
T Consensus        83 ~id~lv~nAg   92 (257)
T 3imf_A           83 RIDILINNAA   92 (257)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999998

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=98.02  E-value=6.6e-05  Score=58.12  Aligned_cols=106  Identities=14%  Similarity=0.157  Sum_probs=68.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ +++|.++++.+...|++ |++++++.++.+.+    ++.+... .+..|- +.++..+.+.++.+.  .
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--g   82 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFT-VFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH--A   82 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCE-EEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH--S
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh--C
Confidence            5789999996 89999999999999995 99999988765543    2234332 222222 223344445555443  5


Q ss_pred             CccEEEEcCCCH-------------------------HHHHHHHHHhh--cCCEEEEeccCCC
Q 048013          168 GIDVSFDCAGFN-------------------------KTMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       168 ~~d~vi~~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      ++|++|+++|..                         ...+.+++.|.  .+|+++.++....
T Consensus        83 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~  145 (252)
T 3h7a_A           83 PLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATAS  145 (252)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGG
T ss_pred             CceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHH
Confidence            799999999841                         12345555554  3589998875443

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=98.02  E-value=0.00011  Score=57.00  Aligned_cols=105  Identities=19%  Similarity=0.254  Sum_probs=66.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc-----CCC-EEEeCCC-CcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL-----GAD-NIVKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~-----g~~-~~~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++++++.+.+ +++     +.. ..+..+- +.++..+.+.++.+..
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGAR-LLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG   84 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            4688999996 89999999999999995 89999998765543 222     212 2222222 2233334444443322


Q ss_pred             CCCccEEEEcCCCH----------H---------------HHHHHHHHhhc--CCEEEEeccCC
Q 048013          166 GTGIDVSFDCAGFN----------K---------------TMSTALSATRA--GGKVCLVGMGH  202 (216)
Q Consensus       166 ~~~~d~vi~~~g~~----------~---------------~~~~~~~~l~~--~G~~v~~g~~~  202 (216)
                      +  +|++|+++|..          +               ..+.+++.|..  .|+++.++...
T Consensus        85 g--id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~  146 (260)
T 2z1n_A           85 G--ADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVT  146 (260)
T ss_dssp             C--CSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred             C--CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchh
Confidence            3  99999999831          1               12455555533  48999887543

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=98.02  E-value=0.0001  Score=58.35  Aligned_cols=108  Identities=20%  Similarity=0.176  Sum_probs=69.8

Q ss_pred             CCCCEEEEEcC-CH--HHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEEEeCCC-CcccHHHHHHHHHHHc
Q 048013           94 GPETNVLIMGS-GP--IGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNIVKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~--~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      -.++++||+|+ |+  +|.++++.+...|++ |++++++++..+.+    ++.+....+..+- +.++..+.+.++.+..
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAE-LAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKW  107 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCE-EEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence            46789999985 55  999999999999995 88888886543333    2334323332222 2233444444444333


Q ss_pred             CCCccEEEEcCCCH-----------------------------HHHHHHHHHhhcCCEEEEeccCCC
Q 048013          166 GTGIDVSFDCAGFN-----------------------------KTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       166 ~~~~d~vi~~~g~~-----------------------------~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                       .++|++|+++|..                             ...+.+++.|+.+|+++.++....
T Consensus       108 -g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~  173 (293)
T 3grk_A          108 -GKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGA  173 (293)
T ss_dssp             -SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGG
T ss_pred             -CCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhh
Confidence             4799999999841                             123556667777899999885443

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=98.01  E-value=0.0002  Score=55.49  Aligned_cols=82  Identities=24%  Similarity=0.311  Sum_probs=56.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEE-EeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNI-VKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+ ++++.... +..+- +.++..+.+.++.+.. +++|
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-g~id   84 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGAT-VAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHA-GGLD   84 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHS-SSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHc-CCCC
Confidence            5789999996 89999999999999995 89999998876644 45554432 22222 2233444445544333 4799


Q ss_pred             EEEEcCCC
Q 048013          171 VSFDCAGF  178 (216)
Q Consensus       171 ~vi~~~g~  178 (216)
                      ++|+++|.
T Consensus        85 ~lv~~Ag~   92 (259)
T 4e6p_A           85 ILVNNAAL   92 (259)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999984

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=98.00  E-value=0.00022  Score=55.41  Aligned_cols=109  Identities=17%  Similarity=0.150  Sum_probs=69.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCCC-cccHHHHHHHHHHHcC
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVSTN-LQDIAEEVEKIQKAMG  166 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~~-~~~~~~~~~~~~~~~~  166 (216)
                      -.++++||+|+ |++|..+++.+...|++ |++++++.++.+.+    ++.+... .+..+-. .++..+.+.++.+.. 
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-  104 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGAR-VVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAH-  104 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhc-
Confidence            45789999996 89999999999889995 99999998776543    2234332 2222222 223334444444333 


Q ss_pred             CCccEEEEcCCCH-----------H---------------HHHHHHHHh--hcCCEEEEeccCCCC
Q 048013          167 TGIDVSFDCAGFN-----------K---------------TMSTALSAT--RAGGKVCLVGMGHRE  204 (216)
Q Consensus       167 ~~~d~vi~~~g~~-----------~---------------~~~~~~~~l--~~~G~~v~~g~~~~~  204 (216)
                      .++|++|.++|..           +               ..+.+++.|  +..|+++.++.....
T Consensus       105 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~  170 (262)
T 3rkr_A          105 GRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGK  170 (262)
T ss_dssp             SCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSS
T ss_pred             CCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhc
Confidence            3799999998850           0               234445545  346899999865543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.00  E-value=0.00014  Score=50.90  Aligned_cols=95  Identities=14%  Similarity=0.159  Sum_probs=63.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEc
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC  175 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  175 (216)
                      .++++|+|+|.+|..+++.+...|.+ |+++++++++.+.+++.+...+. .+..++   +.+.+.   .-.++|++|.+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~-V~~id~~~~~~~~~~~~~~~~~~-gd~~~~---~~l~~~---~~~~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKK-VLAVDKSKEKIELLEDEGFDAVI-ADPTDE---SFYRSL---DLEGVSAVLIT   77 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC-EEEEESCHHHHHHHHHTTCEEEE-CCTTCH---HHHHHS---CCTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHCCCcEEE-CCCCCH---HHHHhC---CcccCCEEEEe
Confidence            46799999999999999999999996 99999999998888877764432 222222   222221   23579999999


Q ss_pred             CCCHHHHHHHHHHhhc--CCEEEEe
Q 048013          176 AGFNKTMSTALSATRA--GGKVCLV  198 (216)
Q Consensus       176 ~g~~~~~~~~~~~l~~--~G~~v~~  198 (216)
                      +++..........++.  ..+++..
T Consensus        78 ~~~~~~n~~~~~~a~~~~~~~iia~  102 (141)
T 3llv_A           78 GSDDEFNLKILKALRSVSDVYAIVR  102 (141)
T ss_dssp             CSCHHHHHHHHHHHHHHCCCCEEEE
T ss_pred             cCCHHHHHHHHHHHHHhCCceEEEE
Confidence            9975433333333332  4444443

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.99  E-value=0.00019  Score=55.91  Aligned_cols=81  Identities=25%  Similarity=0.312  Sum_probs=53.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc-----CCCE-EEeCCC-CcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL-----GADN-IVKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~-----g~~~-~~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++++++.+.+ +++     +... .+..|- +.++..+.+.++.+..
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   90 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAK-LSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   90 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            5789999996 89999999999999995 89999998775543 222     3332 222222 2233444444444333


Q ss_pred             CCCccEEEEcCC
Q 048013          166 GTGIDVSFDCAG  177 (216)
Q Consensus       166 ~~~~d~vi~~~g  177 (216)
                       +++|++|+++|
T Consensus        91 -g~id~lv~nAg  101 (267)
T 1iy8_A           91 -GRIDGFFNNAG  101 (267)
T ss_dssp             -SCCSEEEECCC
T ss_pred             -CCCCEEEECCC
Confidence             37999999987

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.98  E-value=0.00013  Score=57.17  Aligned_cols=104  Identities=16%  Similarity=0.227  Sum_probs=67.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCC-EEEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGAD-NIVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~-~~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|.++++.+...|+ +|+++++++++.+.+    ++.+.. ..+..+- +.++..+.+.++.+.. .
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g  104 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEF-G  104 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHc-C
Confidence            5788999986 8999999999999999 499999998776543    233433 2222222 2233444444444333 3


Q ss_pred             CccEEEEcCCCH----------H---------------HHHHHHHHh--hcCCEEEEecc
Q 048013          168 GIDVSFDCAGFN----------K---------------TMSTALSAT--RAGGKVCLVGM  200 (216)
Q Consensus       168 ~~d~vi~~~g~~----------~---------------~~~~~~~~l--~~~G~~v~~g~  200 (216)
                      ++|++|+++|..          +               ..+.+++.+  +.+|+++.++.
T Consensus       105 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS  164 (270)
T 3ftp_A          105 ALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITS  164 (270)
T ss_dssp             CCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECc
Confidence            799999999831          1               234455554  35689998875

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.98  E-value=0.00012  Score=56.91  Aligned_cols=83  Identities=22%  Similarity=0.206  Sum_probs=55.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEE-EeCCC-CcccHHHHHHHHHHHcC
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNI-VKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      -.++++||+|+ +++|..+++.+...|++ |++++++.++.+.+    ++.+.... +..+- +.++..+.+.++.+.. 
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-   86 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGAD-LVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAY-   86 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT-
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            36789999996 89999999999999995 99999998776543    22343322 22222 2233444455544333 


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      .++|++|+++|.
T Consensus        87 g~id~lv~nAg~   98 (264)
T 3ucx_A           87 GRVDVVINNAFR   98 (264)
T ss_dssp             SCCSEEEECCCS
T ss_pred             CCCcEEEECCCC
Confidence            479999999864

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.98  E-value=0.00021  Score=55.35  Aligned_cols=81  Identities=23%  Similarity=0.278  Sum_probs=54.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCC-cccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTN-LQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++++++.+..+++.. ..+..+-. .++..+.+.++.+.. +++|++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~-g~iD~l   81 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGAL-VALCDLRPEGKEVAEAIGG-AFFQVDLEDERERVRFVEEAAYAL-GRVDVL   81 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSTTHHHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHH-SCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChhHHHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence            4688999996 89999999999999995 8888888776434455542 33332222 233444444443333 379999


Q ss_pred             EEcCCC
Q 048013          173 FDCAGF  178 (216)
Q Consensus       173 i~~~g~  178 (216)
                      |+++|.
T Consensus        82 v~~Ag~   87 (256)
T 2d1y_A           82 VNNAAI   87 (256)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999883

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.98  E-value=0.00017  Score=56.37  Aligned_cols=83  Identities=13%  Similarity=0.216  Sum_probs=54.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-H---HcCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-K---KLGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~---~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|.++++.+...|++ |+++++++++.+.+ +   +.+... .+..+- +.++..+.++++.+..+.
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   98 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGAR-VYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG   98 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999996 89999999999999995 89999998765543 2   234332 222222 223333444444433325


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|+++|.
T Consensus        99 ~id~lv~nAg~  109 (273)
T 1ae1_A           99 KLNILVNNAGV  109 (273)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            79999999984

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.98  E-value=0.00019  Score=56.16  Aligned_cols=108  Identities=17%  Similarity=0.224  Sum_probs=70.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCC-EEEeCCC-CcccHHHHHHHHHHHcCCCc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGAD-NIVKVST-NLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~  169 (216)
                      ..++++||+|+ |++|.++++.+...|++ |++++++.++.+.+ ++++.. ..+..|- +.++..+.+.++.+.. +++
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~i  103 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGYG-VALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKF-GRV  103 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHH-SCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHc-CCC
Confidence            35788999996 89999999999999995 99999998876654 455533 2222222 2233444444444333 379


Q ss_pred             cEEEEcCCCH--------------------------HHHHHHHHHhhc----CCEEEEeccCCC
Q 048013          170 DVSFDCAGFN--------------------------KTMSTALSATRA----GGKVCLVGMGHR  203 (216)
Q Consensus       170 d~vi~~~g~~--------------------------~~~~~~~~~l~~----~G~~v~~g~~~~  203 (216)
                      |++++++|..                          ...+.+++.|..    +|+++.++....
T Consensus       104 D~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~  167 (272)
T 4dyv_A          104 DVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISA  167 (272)
T ss_dssp             CEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSST
T ss_pred             CEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhh
Confidence            9999998841                          023556666653    579999986544

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.98  E-value=9.4e-05  Score=55.42  Aligned_cols=104  Identities=13%  Similarity=0.106  Sum_probs=71.9

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCC-EEEeCCCCcccHHHHHHHH
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGAD-NIVKVSTNLQDIAEEVEKI  161 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~  161 (216)
                      .+....+.++++||.+|+|. |..++.+++. +. +|+++|.+++..+.+++    ++.. .+..+..   +..+.+.  
T Consensus        47 ~l~~l~~~~~~~vLDlGcG~-G~~~~~la~~-~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~---d~~~~~~--  118 (204)
T 3njr_A           47 TLAALAPRRGELLWDIGGGS-GSVSVEWCLA-GG-RAITIEPRADRIENIQKNIDTYGLSPRMRAVQG---TAPAALA--  118 (204)
T ss_dssp             HHHHHCCCTTCEEEEETCTT-CHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES---CTTGGGT--
T ss_pred             HHHhcCCCCCCEEEEecCCC-CHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeC---chhhhcc--
Confidence            44566788999999999886 8888888887 66 59999999988776644    4554 3222111   1111111  


Q ss_pred             HHHcCCCccEEEEcCCC-HHHHHHHHHHhhcCCEEEEeccC
Q 048013          162 QKAMGTGIDVSFDCAGF-NKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g~-~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                         ....+|+|+...+. ...++.+.+.|+|+|++++....
T Consensus       119 ---~~~~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  156 (204)
T 3njr_A          119 ---DLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIVANAVT  156 (204)
T ss_dssp             ---TSCCCSEEEECSCCCHHHHHHHHHHSCTTCEEEEEECS
T ss_pred             ---cCCCCCEEEECCcccHHHHHHHHHhcCCCcEEEEEecC
Confidence               12469999976553 23778899999999999987643

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.98  E-value=0.00018  Score=56.21  Aligned_cols=108  Identities=21%  Similarity=0.283  Sum_probs=70.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEE-eCCC-CcccHHHHHHHHHHHcCCCc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIV-KVST-NLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~  169 (216)
                      -.++++||+|+ |++|..+++.+...|++ |+++++++++.+.+ ++++..... ..+- +.++..+.+.++.+.. .++
T Consensus        25 l~gk~vlVTGas~gIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~i  102 (266)
T 3grp_A           25 LTGRKALVTGATGGIGEAIARCFHAQGAI-VGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREM-EGI  102 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHH-TSC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHc-CCC
Confidence            35789999986 89999999999999995 88899998876654 456654322 2222 2233334444443333 479


Q ss_pred             cEEEEcCCCHH-------------------------HHHHHHHHh--hcCCEEEEeccCCC
Q 048013          170 DVSFDCAGFNK-------------------------TMSTALSAT--RAGGKVCLVGMGHR  203 (216)
Q Consensus       170 d~vi~~~g~~~-------------------------~~~~~~~~l--~~~G~~v~~g~~~~  203 (216)
                      |++|+++|...                         ..+.+++.|  +..|+++.++....
T Consensus       103 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~  163 (266)
T 3grp_A          103 DILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVG  163 (266)
T ss_dssp             CEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC--
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHH
Confidence            99999998410                         134555555  34589999886443

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.98  E-value=0.00015  Score=56.21  Aligned_cols=82  Identities=13%  Similarity=0.190  Sum_probs=54.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH---cCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK---LGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~---~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++++++.+.+ ++   .+... .+..+- +.++..+.+.++.+..+.
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   86 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGAS-VYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG   86 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999996 89999999999999995 89999998765543 22   24322 122221 223344444444433325


Q ss_pred             CccEEEEcCC
Q 048013          168 GIDVSFDCAG  177 (216)
Q Consensus       168 ~~d~vi~~~g  177 (216)
                      ++|++|+++|
T Consensus        87 ~id~lv~~Ag   96 (260)
T 2ae2_A           87 KLNILVNNAG   96 (260)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999998

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.97  E-value=0.00017  Score=55.72  Aligned_cols=106  Identities=23%  Similarity=0.313  Sum_probs=68.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++++++.+.+ ++++... .+..+- +.+++.+.++++.+.. +++|
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g~iD   81 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGAR-VVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEF-GSVD   81 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHc-CCCC
Confidence            4688999996 89999999999999995 89999998776654 4454322 222222 2233444444444333 3799


Q ss_pred             EEEEcCCCH----------H---------------HHHHHHHHhhc--CCEEEEeccCC
Q 048013          171 VSFDCAGFN----------K---------------TMSTALSATRA--GGKVCLVGMGH  202 (216)
Q Consensus       171 ~vi~~~g~~----------~---------------~~~~~~~~l~~--~G~~v~~g~~~  202 (216)
                      ++|+++|..          +               ..+.+++.|+.  .|+++.++...
T Consensus        82 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~  140 (254)
T 1hdc_A           82 GLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAA  140 (254)
T ss_dssp             EEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchh
Confidence            999998831          1               12345555543  58999887543

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.96  E-value=0.00015  Score=56.89  Aligned_cols=83  Identities=22%  Similarity=0.337  Sum_probs=55.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCC-EEEeCCC-CcccHHHHHHHHHHHcC
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGAD-NIVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~-~~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      -.++++||+|+ |++|..+++.+...|++ |+++++++++.+.+    ++.+.. ..+..|- +.++..+.+.++.+..+
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g  108 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGAQ-VAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELG  108 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35789999996 89999999999999995 88999987765443    233433 2222222 22334444555543333


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                       ++|++|+++|.
T Consensus       109 -~iD~lvnnAg~  119 (276)
T 3r1i_A          109 -GIDIAVCNAGI  119 (276)
T ss_dssp             -CCSEEEECCCC
T ss_pred             -CCCEEEECCCC
Confidence             79999999984

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.96  E-value=0.00014  Score=56.79  Aligned_cols=107  Identities=19%  Similarity=0.246  Sum_probs=68.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEE-EeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNI-VKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|.++++.+...|++ |++++++.++.+.+    ++.+.... +..+- +.++..+.+.++.+.. +
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g   80 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAK-ILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTW-G   80 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc-C
Confidence            4678999996 89999999999999995 89999998776543    22343322 22221 2233444444444333 3


Q ss_pred             CccEEEEcCCCH----------H---------------HHHHHHHHhh--cCCEEEEeccCCC
Q 048013          168 GIDVSFDCAGFN----------K---------------TMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       168 ~~d~vi~~~g~~----------~---------------~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      ++|++++++|..          +               ..+.+++.|.  .+|+++.++....
T Consensus        81 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~  143 (264)
T 3tfo_A           81 RIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGA  143 (264)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHH
Confidence            799999999841          1               2244555553  4689999885443

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.96  E-value=0.00023  Score=55.89  Aligned_cols=107  Identities=22%  Similarity=0.308  Sum_probs=70.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEE-EeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNI-VKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .++++||+|+ |++|.++++.+...|++ |+++++++++.+.+ ++++.... +..+- +.++..+.+.++.+.. +++|
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~iD  103 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGAY-VVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKW-GRVD  103 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHc-CCCC
Confidence            5789999996 89999999999999995 99999998876654 44554432 22222 2233444444444333 3799


Q ss_pred             EEEEcCCCH----------H---------------HHHHHHHHhhc--CCEEEEeccCCC
Q 048013          171 VSFDCAGFN----------K---------------TMSTALSATRA--GGKVCLVGMGHR  203 (216)
Q Consensus       171 ~vi~~~g~~----------~---------------~~~~~~~~l~~--~G~~v~~g~~~~  203 (216)
                      ++|+++|..          +               ..+.+++.|..  +|+++.++....
T Consensus       104 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~  163 (277)
T 4dqx_A          104 VLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTA  163 (277)
T ss_dssp             EEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGG
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhh
Confidence            999999831          1               23456666654  479998875443

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.96  E-value=0.00033  Score=53.20  Aligned_cols=106  Identities=24%  Similarity=0.256  Sum_probs=67.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEEeCCCC-cccHHHHHHHHHHHcCCCccEE
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIVKVSTN-LQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      ++++||+|+ |++|..+++.+...|++ |++++++.++.+.+ ++++....+..+-. .+++.+.+.++.+.. .++|++
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id~l   82 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGYR-VGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAF-GELSAL   82 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHH-SCCCEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence            568999986 99999999999999995 89999998776654 34432233322222 223334444443333 379999


Q ss_pred             EEcCCCH----------H---------------HHHHHHHHhhc--CCEEEEeccCCC
Q 048013          173 FDCAGFN----------K---------------TMSTALSATRA--GGKVCLVGMGHR  203 (216)
Q Consensus       173 i~~~g~~----------~---------------~~~~~~~~l~~--~G~~v~~g~~~~  203 (216)
                      |+++|..          +               ..+.+++.+..  .|+++.++....
T Consensus        83 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~  140 (234)
T 2ehd_A           83 VNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAG  140 (234)
T ss_dssp             EECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTT
T ss_pred             EECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchh
Confidence            9998831          1               12355555543  479998886443

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.96  E-value=0.00014  Score=55.93  Aligned_cols=106  Identities=15%  Similarity=0.210  Sum_probs=68.0

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEEe-CCCCcccHHHHHHHHHHHcCCCc
Q 048013           93 IGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIVK-VSTNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        93 ~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      ..+++++||+|+ |++|..+++.+...|++ |++++++.++.+.+ +++.....+. .+-  .+ .+.+.++.+.. .++
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~--~~-~~~~~~~~~~~-~~i   85 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGSK-VIISGSNEEKLKSLGNALKDNYTIEVCNL--AN-KEECSNLISKT-SNL   85 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCSSEEEEECCT--TS-HHHHHHHHHTC-SCC
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHhccCccEEEcCC--CC-HHHHHHHHHhc-CCC
Confidence            457889999996 89999999999999985 99999998887655 4454433222 211  12 22333333222 469


Q ss_pred             cEEEEcCCCHH-------------------------HHHHHHHHh--hcCCEEEEeccCCC
Q 048013          170 DVSFDCAGFNK-------------------------TMSTALSAT--RAGGKVCLVGMGHR  203 (216)
Q Consensus       170 d~vi~~~g~~~-------------------------~~~~~~~~l--~~~G~~v~~g~~~~  203 (216)
                      |++|.++|...                         ..+.+++.+  +..|+++.++....
T Consensus        86 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~  146 (249)
T 3f9i_A           86 DILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVG  146 (249)
T ss_dssp             SEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHh
Confidence            99999998411                         123444544  34689999886544

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.95  E-value=0.00018  Score=56.29  Aligned_cols=107  Identities=21%  Similarity=0.265  Sum_probs=69.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .++++||+|+ |++|.++++.+...|++ |+++++++++.+.+ ++++... .+..+- +.++..+.+.++.+..+ ++|
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g-~id   87 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGAR-VVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFG-RLD   87 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHS-CCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcC-CCC
Confidence            5789999996 89999999999999995 89999988776544 4555432 222222 22334444444443333 799


Q ss_pred             EEEEcCCCH---------------------------HHHHHHHHHhh--cCCEEEEeccCCC
Q 048013          171 VSFDCAGFN---------------------------KTMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       171 ~vi~~~g~~---------------------------~~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      ++++++|..                           ...+.+++.|.  ..|+++.++....
T Consensus        88 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~  149 (271)
T 3tzq_B           88 IVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATA  149 (271)
T ss_dssp             EEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGG
T ss_pred             EEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHH
Confidence            999998841                           02344555553  3579998875443

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.94  E-value=0.00021  Score=54.64  Aligned_cols=102  Identities=24%  Similarity=0.261  Sum_probs=66.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      ++++||+|+ |++|..+++.+...|++ |++++++.++  ..++++.. .+..+-.+++..+.+.++.+.. .++|++++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~-V~~~~r~~~~--~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~-g~id~lv~   76 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYR-VAIASRNPEE--AAQSLGAV-PLPTDLEKDDPKGLVKRALEAL-GGLHVLVH   76 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCHH--HHHHHTCE-EEECCTTTSCHHHHHHHHHHHH-TSCCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHH--HHHhhCcE-EEecCCchHHHHHHHHHHHHHc-CCCCEEEE
Confidence            578999996 89999999999999995 8888888766  33445532 2222222245555555544333 37999999


Q ss_pred             cCCCH----------H---------------HHHHHHHHhh--cCCEEEEeccCC
Q 048013          175 CAGFN----------K---------------TMSTALSATR--AGGKVCLVGMGH  202 (216)
Q Consensus       175 ~~g~~----------~---------------~~~~~~~~l~--~~G~~v~~g~~~  202 (216)
                      ++|..          +               ..+.+++.|.  ..|+++.++...
T Consensus        77 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~  131 (239)
T 2ekp_A           77 AAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVT  131 (239)
T ss_dssp             CCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchh
Confidence            98831          1               2344555553  357999887543

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.94  E-value=0.00016  Score=56.14  Aligned_cols=107  Identities=21%  Similarity=0.240  Sum_probs=67.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChHHHHHH----HHcCCCEE-EeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIV-DVDDYRLSVA----KKLGADNI-VKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~-~~~~~~~~~~----~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ |++|.++++.+...|++ |+++ ++++++.+.+    ++.+.... +..+- +.++..+.++++.+.. 
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~-vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-   80 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYN-IVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETF-   80 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            5788999986 89999999999999996 6665 8887765543    22344322 22222 2233444444444333 


Q ss_pred             CCccEEEEcCCCH----------H---------------HHHHHHHHhhc--CCEEEEeccCCC
Q 048013          167 TGIDVSFDCAGFN----------K---------------TMSTALSATRA--GGKVCLVGMGHR  203 (216)
Q Consensus       167 ~~~d~vi~~~g~~----------~---------------~~~~~~~~l~~--~G~~v~~g~~~~  203 (216)
                      +++|++|+++|..          +               ..+.+++.|..  .|+++.++....
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~  144 (258)
T 3oid_A           81 GRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGS  144 (258)
T ss_dssp             SCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGG
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhh
Confidence            3799999999731          1               23455666654  579998875443

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.94  E-value=0.00021  Score=56.02  Aligned_cols=108  Identities=19%  Similarity=0.228  Sum_probs=68.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-------------ChHHHHHH----HHcCCCEE-EeCCC-Cccc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV-------------DDYRLSVA----KKLGADNI-VKVST-NLQD  153 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~-------------~~~~~~~~----~~~g~~~~-~~~~~-~~~~  153 (216)
                      -.++++||+|+ +++|.++++.+...|++ |+++++             ++++.+.+    ++.+.... +..+- +.++
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~   91 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGAD-IIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAA   91 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence            46789999996 89999999999999995 888877             55554433    23344322 22222 2233


Q ss_pred             HHHHHHHHHHHcCCCccEEEEcCCCH----------H---------------HHHHHHHHhhc---CCEEEEeccCCC
Q 048013          154 IAEEVEKIQKAMGTGIDVSFDCAGFN----------K---------------TMSTALSATRA---GGKVCLVGMGHR  203 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~d~vi~~~g~~----------~---------------~~~~~~~~l~~---~G~~v~~g~~~~  203 (216)
                      ..+.+.++.+.. +++|++++++|..          +               ..+.+++.|..   +|+++.++....
T Consensus        92 v~~~~~~~~~~~-g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~  168 (280)
T 3pgx_A           92 LRELVADGMEQF-GRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAG  168 (280)
T ss_dssp             HHHHHHHHHHHH-CCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGG
T ss_pred             HHHHHHHHHHHc-CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhh
Confidence            444444444333 3799999999841          1               23455555532   688998885443

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.94  E-value=0.00023  Score=55.68  Aligned_cols=106  Identities=17%  Similarity=0.327  Sum_probs=67.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChHHHHH----HHHcCCCEE-EeCCC-CcccHHHHHHHHHHHc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVD-VDDYRLSV----AKKLGADNI-VKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~-~~~~~~~~----~~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      -.++++||+|+ |++|.++++.+...|++ |++++ ++.++.+.    +++.+.... +..+- +.++..+.+.++.+..
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGAA-VALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEAL  107 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            36789999996 89999999999999995 77664 44444332    233454432 22222 2233444455544333


Q ss_pred             CCCccEEEEcCCCH-------------------------HHHHHHHHHhhcCCEEEEeccC
Q 048013          166 GTGIDVSFDCAGFN-------------------------KTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       166 ~~~~d~vi~~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      + ++|++|+++|..                         ...+.+++.|+.+|+++.++..
T Consensus       108 g-~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~  167 (271)
T 3v2g_A          108 G-GLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSN  167 (271)
T ss_dssp             S-CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCG
T ss_pred             C-CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeCh
Confidence            3 799999999841                         1245566677778999998753

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.94  E-value=0.00012  Score=56.64  Aligned_cols=102  Identities=14%  Similarity=0.113  Sum_probs=66.3

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH---HcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK---KLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      +++||+|+ |++|..+++.+...|++ |++++++.++.+.+.   +.+......   +.++..+.+.++.+.. .++|++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~l~~~~~~~~~~---d~~~v~~~~~~~~~~~-g~iD~l   76 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHT-VACHDESFKQKDELEAFAETYPQLKPM---SEQEPAELIEAVTSAY-GQVDVL   76 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCE-EEECCGGGGSHHHHHHHHHHCTTSEEC---CCCSHHHHHHHHHHHH-SCCCEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhcCCcEEEE---CHHHHHHHHHHHHHHh-CCCCEE
Confidence            46889986 89999999999999995 888988877655443   234432221   2344555555544333 379999


Q ss_pred             EEcCCCH-----------H---------------HHHHHHHHhh--cCCEEEEeccCCC
Q 048013          173 FDCAGFN-----------K---------------TMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       173 i~~~g~~-----------~---------------~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      |+++|..           +               ..+.+++.|.  ..|+++.++....
T Consensus        77 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~  135 (254)
T 1zmt_A           77 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATP  135 (254)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTT
T ss_pred             EECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCccc
Confidence            9998742           1               2344555553  3589999986444

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.93  E-value=0.00038  Score=53.58  Aligned_cols=107  Identities=23%  Similarity=0.268  Sum_probs=67.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH---cCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK---LGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~---~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|.++++.+...|++ |++++++.++.+.+ ++   .+... .+..+- +.++..+.+.++.+.. +
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~-g   83 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAA-VAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEAL-G   83 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc-C
Confidence            4688999996 89999999999999995 88999998776543 22   24332 222222 2233334444443333 3


Q ss_pred             CccEEEEcCCCH-------------------------HHHHHHHHHhh-cCCEEEEeccCCC
Q 048013          168 GIDVSFDCAGFN-------------------------KTMSTALSATR-AGGKVCLVGMGHR  203 (216)
Q Consensus       168 ~~d~vi~~~g~~-------------------------~~~~~~~~~l~-~~G~~v~~g~~~~  203 (216)
                      ++|++|+++|..                         ...+.+++.+. .+|+++.++....
T Consensus        84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~  145 (247)
T 2jah_A           84 GLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSSIAG  145 (247)
T ss_dssp             CCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGG
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEccHHh
Confidence            799999998831                         12344555553 3489999885443

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.92  E-value=0.00021  Score=55.86  Aligned_cols=82  Identities=23%  Similarity=0.266  Sum_probs=53.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc---C---CC-EEEeCCC-CcccHHHHHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL---G---AD-NIVKVST-NLQDIAEEVEKIQKA  164 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~---g---~~-~~~~~~~-~~~~~~~~~~~~~~~  164 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+ +++   .   .. ..+..+- +.++..+.+.++.+.
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGAK-VTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            4678999996 89999999999889995 89999998776543 333   2   11 1222221 223334444444333


Q ss_pred             cCCCccEEEEcCCC
Q 048013          165 MGTGIDVSFDCAGF  178 (216)
Q Consensus       165 ~~~~~d~vi~~~g~  178 (216)
                      . +++|++|+++|.
T Consensus        84 ~-g~id~lv~~Ag~   96 (278)
T 1spx_A           84 F-GKLDILVNNAGA   96 (278)
T ss_dssp             H-SCCCEEEECCC-
T ss_pred             c-CCCCEEEECCCC
Confidence            3 379999999984

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.92  E-value=1.9e-05  Score=59.02  Aligned_cols=136  Identities=15%  Similarity=0.240  Sum_probs=80.9

Q ss_pred             ccceeEE-ecCCceEECCCCCCchhhhcchhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           51 CLANQVV-HPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        51 ~~~~~~~-~~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      .|.+|.. .+....+.+++.+.+..+.. +........+... ++++++||.+|+|. |..+..+++ .+...++++|.+
T Consensus        17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~~~~l~~~-~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~vD~s   92 (205)
T 3grz_A           17 EWEDYQPVFKDQEIIRLDPGLAFGTGNH-QTTQLAMLGIERA-MVKPLTVADVGTGS-GILAIAAHK-LGAKSVLATDIS   92 (205)
T ss_dssp             TTCCCCCSSTTCEEEEESCC-----CCH-HHHHHHHHHHHHH-CSSCCEEEEETCTT-SHHHHHHHH-TTCSEEEEEESC
T ss_pred             cccccccCCCCceeEEecCCcccCCCCC-ccHHHHHHHHHHh-ccCCCEEEEECCCC-CHHHHHHHH-CCCCEEEEEECC
Confidence            5677776 67778888888776655431 1111122223222 56889999999875 666667666 465579999999


Q ss_pred             hHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCH---HHHHHHHHHhhcCCEEEEecc
Q 048013          130 DYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFN---KTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       130 ~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~---~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      ++..+.+++    .+...+....   .++.+       .....+|+|+....-.   ..++.+.+.|+|+|++++...
T Consensus        93 ~~~~~~a~~~~~~~~~~~v~~~~---~d~~~-------~~~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  160 (205)
T 3grz_A           93 DESMTAAEENAALNGIYDIALQK---TSLLA-------DVDGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSGI  160 (205)
T ss_dssp             HHHHHHHHHHHHHTTCCCCEEEE---SSTTT-------TCCSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCceEEEe---ccccc-------cCCCCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            988776654    3443211111   11111       1245799999876542   234556678899999998654

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.92  E-value=0.00031  Score=54.06  Aligned_cols=82  Identities=20%  Similarity=0.275  Sum_probs=56.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEEe-CCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIVK-VST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .++++||+|+ |++|.++++.+...|++ |+++++++++.+.+ ++++...... .|- +.++..+.+.++.+.. .++|
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~id   82 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGAT-VIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALT-GGID   82 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHH-SCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHC-CCCC
Confidence            5789999996 89999999999999995 99999998876654 4565543221 111 2233344444444333 3799


Q ss_pred             EEEEcCCC
Q 048013          171 VSFDCAGF  178 (216)
Q Consensus       171 ~vi~~~g~  178 (216)
                      ++++++|.
T Consensus        83 ~lv~nAg~   90 (247)
T 3rwb_A           83 ILVNNASI   90 (247)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999984

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.91  E-value=0.00011  Score=58.19  Aligned_cols=107  Identities=14%  Similarity=0.179  Sum_probs=68.9

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEEEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-G--PIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNIVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g--~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ |  ++|.++++.+...|++ |++++++++..+.+    ++.+....+..|- +.++..+.+.++.+.. 
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-  106 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAE-VALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEW-  106 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            5789999996 5  9999999999999995 88898887544333    3344433333322 2233444455544333 


Q ss_pred             CCccEEEEcCCCH--------------H---------------HHHHHHHHhhcCCEEEEeccCCC
Q 048013          167 TGIDVSFDCAGFN--------------K---------------TMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       167 ~~~d~vi~~~g~~--------------~---------------~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      .++|++|+++|..              +               ..+.+++.|+.+|+++.++....
T Consensus       107 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~  172 (296)
T 3k31_A          107 GSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGA  172 (296)
T ss_dssp             SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGG
T ss_pred             CCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhh
Confidence            3799999999831              0               22344445566899998875443

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=97.91  E-value=0.00029  Score=54.29  Aligned_cols=107  Identities=21%  Similarity=0.238  Sum_probs=65.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh--HHHHHHHHc-CCCE--EEeCCCCc--ccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDD--YRLSVAKKL-GADN--IVKVSTNL--QDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~--~~~~~~~~~-g~~~--~~~~~~~~--~~~~~~~~~~~~~~~  166 (216)
                      .+++++|+|+ |++|..+++.+...|+++|++++++.  +..+.+.+. +...  .+..+-.+  ++..+.+.++.+.. 
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~-   82 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL-   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH-
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc-
Confidence            4688999986 89999999999999996577777775  334444332 2112  22222222  23444444443333 


Q ss_pred             CCccEEEEcCCCH-----------------HHHHHHHHHhhc-----CCEEEEeccCC
Q 048013          167 TGIDVSFDCAGFN-----------------KTMSTALSATRA-----GGKVCLVGMGH  202 (216)
Q Consensus       167 ~~~d~vi~~~g~~-----------------~~~~~~~~~l~~-----~G~~v~~g~~~  202 (216)
                      .++|++|+++|..                 ...+.+++.+..     +|+++.++...
T Consensus        83 g~id~lv~~Ag~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~  140 (254)
T 1sby_A           83 KTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVT  140 (254)
T ss_dssp             SCCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred             CCCCEEEECCccCCHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchh
Confidence            3799999999831                 123445555533     57899887543

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.91  E-value=0.0002  Score=56.19  Aligned_cols=82  Identities=27%  Similarity=0.339  Sum_probs=54.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCC--EE--EeCC-CCcccHHHHHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGAD--NI--VKVS-TNLQDIAEEVEKIQKA  164 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~--~~--~~~~-~~~~~~~~~~~~~~~~  164 (216)
                      .++++||+|+ |++|.++++.+...|++ |+++++++++.+.+    ++.+..  .+  +..| .+.++..+.+.++.+.
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGAS-VMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            5789999986 89999999999999995 89999998775543    223331  22  1122 1223344444444433


Q ss_pred             cCCCccEEEEcCCC
Q 048013          165 MGTGIDVSFDCAGF  178 (216)
Q Consensus       165 ~~~~~d~vi~~~g~  178 (216)
                      . .++|++++++|.
T Consensus        89 ~-g~id~lv~nAg~  101 (281)
T 3svt_A           89 H-GRLHGVVHCAGG  101 (281)
T ss_dssp             H-SCCCEEEECCCC
T ss_pred             c-CCCCEEEECCCc
Confidence            3 379999999984

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.90  E-value=0.00016  Score=57.14  Aligned_cols=105  Identities=20%  Similarity=0.229  Sum_probs=66.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHH-HHH----HHHcCCCEE-EeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYR-LSV----AKKLGADNI-VKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~-~~~----~~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ |++|.++++.+...|++ |+++++++++ .+.    +++.+.... +..|- +.++..+.+.++.+.. 
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-  123 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGAN-IAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQL-  123 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc-
Confidence            5789999996 89999999999999995 8888887643 222    233444432 22222 2233344444444333 


Q ss_pred             CCccEEEEcCCCH--------------------------HHHHHHHHHhhcCCEEEEeccC
Q 048013          167 TGIDVSFDCAGFN--------------------------KTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       167 ~~~d~vi~~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      +++|++|+++|..                          ...+.+++.|+.+|+++.++..
T Consensus       124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~  184 (291)
T 3ijr_A          124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASI  184 (291)
T ss_dssp             SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCT
T ss_pred             CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEech
Confidence            3799999998731                          0234555566678899988753

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.90  E-value=0.00024  Score=56.36  Aligned_cols=106  Identities=21%  Similarity=0.239  Sum_probs=67.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-H---HcCC---C-EEEeCCC-CcccHHHHHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-K---KLGA---D-NIVKVST-NLQDIAEEVEKIQKA  164 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~---~~g~---~-~~~~~~~-~~~~~~~~~~~~~~~  164 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++++++.+.+ +   +.+.   . ..+..+- +.++..+.+.++.+.
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  103 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQ-VTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK  103 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence            5688999986 89999999999999995 89999998776543 2   2232   2 1222222 223334444444333


Q ss_pred             cCCCccEEEEcCCCH---------------------------HHHHHHHHHhh-cCCEEEEeccCC
Q 048013          165 MGTGIDVSFDCAGFN---------------------------KTMSTALSATR-AGGKVCLVGMGH  202 (216)
Q Consensus       165 ~~~~~d~vi~~~g~~---------------------------~~~~~~~~~l~-~~G~~v~~g~~~  202 (216)
                      . +++|++|+++|..                           ...+.+++.+. .+|+++.++...
T Consensus       104 ~-g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS~~  168 (297)
T 1xhl_A          104 F-GKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIV  168 (297)
T ss_dssp             H-SCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred             c-CCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcCch
Confidence            3 3799999998731                           12345555553 348999987543

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.90  E-value=0.00025  Score=55.04  Aligned_cols=82  Identities=24%  Similarity=0.398  Sum_probs=53.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH---cCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK---LGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~---~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|.++++.+...|++ |++++++.++.+.+ ++   .+... .+..+- +.++..+.+.++.+.. +
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g   83 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTA-IALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF-G   83 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh-C
Confidence            5689999996 89999999999999995 88899998776543 22   24332 222221 2233334444443333 3


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|+++|.
T Consensus        84 ~id~lv~nAg~   94 (262)
T 1zem_A           84 KIDFLFNNAGY   94 (262)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999873

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=97.90  E-value=0.00012  Score=57.62  Aligned_cols=107  Identities=21%  Similarity=0.241  Sum_probs=68.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc----CCC-EEEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL----GAD-NIVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~----g~~-~~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ |++|.++++.+...|++ |+++++++++.+.+ +++    +.. ..+..|- +.++..+.+.++.+.. 
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-  109 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYS-VVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEF-  109 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            5789999996 89999999999999995 99999998776543 222    222 2222222 2233444455544333 


Q ss_pred             CCccEEEEcCCCH-----------H---------------HHHHHHHHhhc----CCEEEEeccCCC
Q 048013          167 TGIDVSFDCAGFN-----------K---------------TMSTALSATRA----GGKVCLVGMGHR  203 (216)
Q Consensus       167 ~~~d~vi~~~g~~-----------~---------------~~~~~~~~l~~----~G~~v~~g~~~~  203 (216)
                      +++|++|+++|..           +               ..+.+++.+..    +|+++.++....
T Consensus       110 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~  176 (281)
T 4dry_A          110 ARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISA  176 (281)
T ss_dssp             SCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGG
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHh
Confidence            4799999999841           1               23555666643    579999885443

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.90  E-value=0.0003  Score=54.62  Aligned_cols=106  Identities=18%  Similarity=0.216  Sum_probs=67.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCC-EEEeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGAD-NIVKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+ +++... ..+..+- +.++..+.++++.+.. +++|
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-g~iD   83 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGAK-VVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAF-GGLH   83 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHc-CCCC
Confidence            4688999996 89999999999889995 88999998776544 334322 1222221 2233344444443333 3799


Q ss_pred             EEEEcCCCH----------H---------------HHHHHHHHhh--cCCEEEEeccCC
Q 048013          171 VSFDCAGFN----------K---------------TMSTALSATR--AGGKVCLVGMGH  202 (216)
Q Consensus       171 ~vi~~~g~~----------~---------------~~~~~~~~l~--~~G~~v~~g~~~  202 (216)
                      ++|+++|..          +               ..+.+++.|+  ..|+++.++...
T Consensus        84 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~  142 (260)
T 1nff_A           84 VLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIE  142 (260)
T ss_dssp             EEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehh
Confidence            999998831          1               1245555554  358999887543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.89  E-value=0.00017  Score=53.70  Aligned_cols=105  Identities=14%  Similarity=0.159  Sum_probs=72.5

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHH
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~  162 (216)
                      .+....++++++||.+|+|. |..++.+++.....+++++|.+++..+.+++    .+...+..+..   +..+.+.   
T Consensus        32 ~l~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~~~~---  104 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEA---FAPEGLD---  104 (204)
T ss_dssp             HHHHTTCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEEC---CTTTTCT---
T ss_pred             HHHHcCCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeC---Chhhhhh---
Confidence            44566788999999999885 8888888888644479999999988777654    35432222111   1111110   


Q ss_pred             HHcCCCccEEEEcCCC---HHHHHHHHHHhhcCCEEEEecc
Q 048013          163 KAMGTGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                        ....+|+|+.....   ...++.+.+.|+|+|++++...
T Consensus       105 --~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  143 (204)
T 3e05_A          105 --DLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAV  143 (204)
T ss_dssp             --TSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             --cCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEec
Confidence              12469999987652   4677889999999999998754

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.89  E-value=0.00025  Score=54.89  Aligned_cols=107  Identities=16%  Similarity=0.206  Sum_probs=69.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEE-EeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNI-VKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+    ++.+.... +..+- +.++..+.+.++.+.. +
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g   88 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGAS-VVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQF-G   88 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTCE-EEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc-C
Confidence            5789999986 89999999999889995 89999998775543    23344322 22222 2233344444444333 3


Q ss_pred             CccEEEEcCCCH---------H---------------HHHHHHHHhhc--CCEEEEeccCCC
Q 048013          168 GIDVSFDCAGFN---------K---------------TMSTALSATRA--GGKVCLVGMGHR  203 (216)
Q Consensus       168 ~~d~vi~~~g~~---------~---------------~~~~~~~~l~~--~G~~v~~g~~~~  203 (216)
                      ++|++++++|..         +               ..+.+++.|..  +|+++.++....
T Consensus        89 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~  150 (256)
T 3gaf_A           89 KITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAG  150 (256)
T ss_dssp             CCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGG
T ss_pred             CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHH
Confidence            799999998841         1               23455555543  579998885443

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.89  E-value=0.00037  Score=54.17  Aligned_cols=107  Identities=19%  Similarity=0.232  Sum_probs=68.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH---cCCCE--EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK---LGADN--IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~---~g~~~--~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+ ++   .+...  .+..|- +.++..+.+.++.+.. 
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-   86 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGAN-VAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEF-   86 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHh-
Confidence            5789999986 89999999999999994 99999998776543 22   33222  222222 2233444444444333 


Q ss_pred             CCccEEEEcCCCH----------H---------------HHHHHHHHhh--cCCEEEEeccCCC
Q 048013          167 TGIDVSFDCAGFN----------K---------------TMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       167 ~~~d~vi~~~g~~----------~---------------~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      .++|++++++|..          +               ..+.+++.|.  ..|+++.++....
T Consensus        87 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~  150 (262)
T 3pk0_A           87 GGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITG  150 (262)
T ss_dssp             SCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBT
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhh
Confidence            3799999999831          1               2344555553  4589998875443

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.89  E-value=0.00019  Score=55.12  Aligned_cols=82  Identities=18%  Similarity=0.196  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCC--C-EEEeCCCC-cccHHHHHHHHHHHcCCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGA--D-NIVKVSTN-LQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~--~-~~~~~~~~-~~~~~~~~~~~~~~~~~~  168 (216)
                      +++++||+|+ |++|..+++.+...|++ |++++++.++.+.+ +++..  . ..+..+-. .+++.+.+.++.+.. .+
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~   82 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGAK-VMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAF-GP   82 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH-SS
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHh-CC
Confidence            5688999996 99999999999999995 89999988766543 33331  1 22222222 223334444443333 36


Q ss_pred             ccEEEEcCCC
Q 048013          169 IDVSFDCAGF  178 (216)
Q Consensus       169 ~d~vi~~~g~  178 (216)
                      +|++|.++|.
T Consensus        83 id~li~~Ag~   92 (251)
T 1zk4_A           83 VSTLVNNAGI   92 (251)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.88  E-value=0.00023  Score=54.84  Aligned_cols=104  Identities=18%  Similarity=0.279  Sum_probs=68.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .++++||+|+ |++|.++++.+...|++ |+++++++++.+.+ ++++... .+..+- +.++..+.++++.+.. +++|
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~iD   85 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGAK-VIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEF-GGVD   85 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHH-CCCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHc-CCCC
Confidence            5789999986 89999999999999995 89999998876654 3343321 222222 2233444455544333 3799


Q ss_pred             EEEEcCCCH----------H---------------HHHHHHHHh--hcCCEEEEecc
Q 048013          171 VSFDCAGFN----------K---------------TMSTALSAT--RAGGKVCLVGM  200 (216)
Q Consensus       171 ~vi~~~g~~----------~---------------~~~~~~~~l--~~~G~~v~~g~  200 (216)
                      ++++++|..          +               ..+.+++.|  +..|+++.++.
T Consensus        86 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS  142 (248)
T 3op4_A           86 ILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGS  142 (248)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            999999841          1               234455555  34689998875

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.88  E-value=0.00021  Score=55.97  Aligned_cols=106  Identities=19%  Similarity=0.260  Sum_probs=66.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCC-CEE--EeCCC-CcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGA-DNI--VKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~-~~~--~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+    ++.+. ..+  +..+- +.+++.+.+.++.+..
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGLK-VVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            5689999996 99999999999999995 89999988765543    22332 122  22222 2223333444443323


Q ss_pred             CCCccEEEEcCCCH----------H---------------HHHHHHHHhhc----CCEEEEeccCC
Q 048013          166 GTGIDVSFDCAGFN----------K---------------TMSTALSATRA----GGKVCLVGMGH  202 (216)
Q Consensus       166 ~~~~d~vi~~~g~~----------~---------------~~~~~~~~l~~----~G~~v~~g~~~  202 (216)
                       .++|++|.++|..          +               ..+.+++.+..    +|+++.++...
T Consensus       110 -g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~  174 (279)
T 1xg5_A          110 -SGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMS  174 (279)
T ss_dssp             -CCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGG
T ss_pred             -CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChh
Confidence             3799999999831          1               13455666643    27999888543

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.88  E-value=0.00037  Score=54.53  Aligned_cols=108  Identities=18%  Similarity=0.131  Sum_probs=64.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc---CCCE-EEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL---GADN-IVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~---g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      -.++++||+|+ |++|.++++.+...|++ |++++++++..+.++++   +... .+..+-.+.+..+.+.+..+.. .+
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~-g~  106 (273)
T 3uf0_A           29 LAGRTAVVTGAGSGIGRAIAHGYARAGAH-VLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAAT-RR  106 (273)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHH-SC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhc-CC
Confidence            35789999996 89999999999999995 88888776544444433   3322 2222222222222222222222 47


Q ss_pred             ccEEEEcCCCH----------H---------------HHHHHHHHhh--cCCEEEEeccCCC
Q 048013          169 IDVSFDCAGFN----------K---------------TMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       169 ~d~vi~~~g~~----------~---------------~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      +|++|+++|..          +               ..+.+++.|.  ..|+++.++....
T Consensus       107 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~  168 (273)
T 3uf0_A          107 VDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLS  168 (273)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             CcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHh
Confidence            99999998841          1               2344445543  4589998875443

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=97.88  E-value=0.00025  Score=54.99  Aligned_cols=83  Identities=19%  Similarity=0.285  Sum_probs=53.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCCC-cccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVSTN-LQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~~-~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++++++.+.+    ++.+... .+..+-. .++..+.++++.+..+.
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   91 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGAV-IHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG   91 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            4688999986 99999999999999995 88899987765433    2234332 2222222 22233344444333335


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.++|.
T Consensus        92 ~id~li~~Ag~  102 (266)
T 1xq1_A           92 KLDILINNLGA  102 (266)
T ss_dssp             CCSEEEEECCC
T ss_pred             CCcEEEECCCC
Confidence            79999999884

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.88  E-value=0.00032  Score=54.68  Aligned_cols=81  Identities=23%  Similarity=0.365  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCC--C-EEEeCCC-CcccHHHHHHHHHHHcCCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGA--D-NIVKVST-NLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~--~-~~~~~~~-~~~~~~~~~~~~~~~~~~~  168 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+ ++++.  . ..+..+- +.+++.+.++++.+.. .+
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~   92 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGAK-VVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKH-GK   92 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH-SC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHc-CC
Confidence            5688999996 99999999999999995 88888987765433 34432  1 2222222 2223334444443333 37


Q ss_pred             ccEEEEcCC
Q 048013          169 IDVSFDCAG  177 (216)
Q Consensus       169 ~d~vi~~~g  177 (216)
                      +|++|+++|
T Consensus        93 id~li~~Ag  101 (278)
T 2bgk_A           93 LDIMFGNVG  101 (278)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCc
Confidence            999999987

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.88  E-value=0.00036  Score=54.25  Aligned_cols=107  Identities=16%  Similarity=0.198  Sum_probs=68.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH----cCCCEE--EeCCC-CcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK----LGADNI--VKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~----~g~~~~--~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      .++++||+|+ +++|.++++.+...|++ |++++++.++.+.+ ++    .+...+  +..+- +.++..+.+.++.+..
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGAA-VAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            5789999996 89999999999999995 99999998775543 22    333212  22222 2233334444444333


Q ss_pred             CCCccEEEEcCCCH-------------------------HHHHHHHHHhhc--CCEEEEeccCCC
Q 048013          166 GTGIDVSFDCAGFN-------------------------KTMSTALSATRA--GGKVCLVGMGHR  203 (216)
Q Consensus       166 ~~~~d~vi~~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~~~~  203 (216)
                       .++|++++++|..                         ...+.+++.|..  .|+++.++....
T Consensus        86 -g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~  149 (265)
T 3lf2_A           86 -GCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLA  149 (265)
T ss_dssp             -CSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGG
T ss_pred             -CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCccc
Confidence             3799999999841                         123555666644  578988875443

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.87  E-value=0.00031  Score=54.70  Aligned_cols=107  Identities=28%  Similarity=0.327  Sum_probs=69.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH----cCCCE-EEeCC-CCcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK----LGADN-IVKVS-TNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~----~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ |++|.++++.+...|++ |++++++.++.+.+ ++    .+... .+..| .+.++..+.+.++.+.. 
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-   96 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGAR-LVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAF-   96 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc-
Confidence            5789999996 89999999999999995 99999998776543 22    34432 22222 22234444455554333 


Q ss_pred             CCccEEEEcCCCH----------H---------------HHHHHHHHhhc---CCEEEEeccCCC
Q 048013          167 TGIDVSFDCAGFN----------K---------------TMSTALSATRA---GGKVCLVGMGHR  203 (216)
Q Consensus       167 ~~~d~vi~~~g~~----------~---------------~~~~~~~~l~~---~G~~v~~g~~~~  203 (216)
                      .++|++|+++|..          +               ..+.+++.|..   +|+++.++....
T Consensus        97 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~  161 (266)
T 4egf_A           97 GGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAA  161 (266)
T ss_dssp             TSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGG
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhh
Confidence            3799999998841          1               23445555543   579998875443

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.87  E-value=0.00036  Score=53.45  Aligned_cols=108  Identities=17%  Similarity=0.215  Sum_probs=68.5

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCC--CEEEeCCC--C-cccHHHHHHHHHH
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGA--DNIVKVST--N-LQDIAEEVEKIQK  163 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~--~~~~~~~~--~-~~~~~~~~~~~~~  163 (216)
                      -.++++||+|+ |++|..+++.+...|++ |+++++++++.+.+    ++.+.  ...+..+-  . .++..+.+.++.+
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~   90 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAAHGAS-VVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEH   90 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHH
Confidence            35789999996 89999999999999995 99999998776544    22332  22332222  2 2233333444433


Q ss_pred             HcCCCccEEEEcCCCH-----------H---------------HHHHHHHHhhc--CCEEEEeccCCC
Q 048013          164 AMGTGIDVSFDCAGFN-----------K---------------TMSTALSATRA--GGKVCLVGMGHR  203 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~~-----------~---------------~~~~~~~~l~~--~G~~v~~g~~~~  203 (216)
                      .. +++|++|.++|..           +               ..+.+++.|+.  .|+++.++....
T Consensus        91 ~~-g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~  157 (247)
T 3i1j_A           91 EF-GRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVG  157 (247)
T ss_dssp             HH-SCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGG
T ss_pred             hC-CCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhh
Confidence            33 3799999998841           0               23455666643  478888875433

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.87  E-value=0.00039  Score=54.21  Aligned_cols=107  Identities=21%  Similarity=0.312  Sum_probs=68.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChHHHHH----HHHcCCCEE-EeCCC-CcccHHHHHHHHHHHc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV-DDYRLSV----AKKLGADNI-VKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~-~~~~~~~----~~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      -.++++||+|+ +++|.++++.+...|++ |+++++ +.++.+.    +++.+.... +..+- +.++..+.+.++.+..
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   94 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRLGAK-VVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHF   94 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35789999996 89999999999999995 666544 4444332    334454432 22222 2233444455544333


Q ss_pred             CCCccEEEEcCCCH-------------------------HHHHHHHHHhhcCCEEEEeccCC
Q 048013          166 GTGIDVSFDCAGFN-------------------------KTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       166 ~~~~d~vi~~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      + ++|++++++|..                         ...+.+++.|..+|+++.++...
T Consensus        95 g-~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  155 (270)
T 3is3_A           95 G-HLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT  155 (270)
T ss_dssp             S-CCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred             C-CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence            3 699999999841                         13456677777899999998654

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.87  E-value=0.00028  Score=55.79  Aligned_cols=83  Identities=16%  Similarity=0.186  Sum_probs=52.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH---cCCCE--EEeCCCCc--ccHHHHHHHHHHH
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK---LGADN--IVKVSTNL--QDIAEEVEKIQKA  164 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~---~g~~~--~~~~~~~~--~~~~~~~~~~~~~  164 (216)
                      ..++++||+|+ |++|..+++.+...|+ +|++++++.++.+.+ ++   .+...  .+..+-.+  +.....+..+.+.
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            35789999996 8999999999999999 499999998775433 22   23221  22222222  2233333334332


Q ss_pred             cCCCccEEEEcCCC
Q 048013          165 MGTGIDVSFDCAGF  178 (216)
Q Consensus       165 ~~~~~d~vi~~~g~  178 (216)
                      . .++|++|+++|.
T Consensus        89 ~-g~iD~lv~nAg~  101 (311)
T 3o26_A           89 F-GKLDILVNNAGV  101 (311)
T ss_dssp             H-SSCCEEEECCCC
T ss_pred             C-CCCCEEEECCcc
Confidence            2 479999999984

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.85  E-value=0.00046  Score=53.33  Aligned_cols=82  Identities=20%  Similarity=0.283  Sum_probs=52.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-Hc---C-------C-CEEEeCCC-CcccHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KL---G-------A-DNIVKVST-NLQDIAEEVEK  160 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~---g-------~-~~~~~~~~-~~~~~~~~~~~  160 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+. ++   +       . -..+..+- +.+.+.+.+++
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   84 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGAT-VAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQ   84 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHH
Confidence            4678999996 99999999999889984 999999987765442 23   1       1 12222222 22233444444


Q ss_pred             HHHHcCCCc-cEEEEcCCC
Q 048013          161 IQKAMGTGI-DVSFDCAGF  178 (216)
Q Consensus       161 ~~~~~~~~~-d~vi~~~g~  178 (216)
                      +.+..+ ++ |++|.++|.
T Consensus        85 ~~~~~g-~i~d~vi~~Ag~  102 (264)
T 2pd6_A           85 VQACFS-RPPSVVVSCAGI  102 (264)
T ss_dssp             HHHHHS-SCCSEEEECCCC
T ss_pred             HHHHhC-CCCeEEEECCCc
Confidence            433334 56 999999883

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.85  E-value=0.00053  Score=53.95  Aligned_cols=108  Identities=19%  Similarity=0.297  Sum_probs=69.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc---CCCE-EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL---GADN-IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~---g~~~-~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .+++++||+|+ |++|.++++.+...|++ |++++++.++.+.+ +++   +... .+..+- +.++..+.+.++.+.. 
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-  103 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGVT-VGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKF-  103 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh-
Confidence            35789999996 89999999999999994 99999998776544 333   3322 222222 2233444455544333 


Q ss_pred             CCccEEEEcCCCH--------------------------HHHHHHHHHhh--cCCEEEEeccCCC
Q 048013          167 TGIDVSFDCAGFN--------------------------KTMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       167 ~~~d~vi~~~g~~--------------------------~~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      +++|++++++|..                          ...+.+++.|+  .+|+++.++....
T Consensus       104 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~  168 (283)
T 3v8b_A          104 GHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSING  168 (283)
T ss_dssp             SCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBT
T ss_pred             CCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhh
Confidence            3799999998841                          12345555554  3689999886443

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.85  E-value=1.5e-05  Score=66.20  Aligned_cols=101  Identities=22%  Similarity=0.302  Sum_probs=74.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .-.|++|+|+|.|.+|..+++.++.+|+ +|++++++..+...+...|....        +    +.++    -...|++
T Consensus       208 ~L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a~~A~~~G~~~~--------s----L~ea----l~~ADVV  270 (436)
T 3h9u_A          208 MIAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINALQAAMEGYQVL--------L----VEDV----VEEAHIF  270 (436)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC--------C----HHHH----TTTCSEE
T ss_pred             cccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhhHHHHHhCCeec--------C----HHHH----HhhCCEE
Confidence            4578999999999999999999999999 59999999877766666665321        1    2222    2368999


Q ss_pred             EEcCCCHHHH-HHHHHHhhcCCEEEEeccCCCCCcccchhh
Q 048013          173 FDCAGFNKTM-STALSATRAGGKVCLVGMGHREMTVPLTPA  212 (216)
Q Consensus       173 i~~~g~~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  212 (216)
                      +.+.+....+ ...+..|+++..++.+|-  ++..+++..+
T Consensus       271 ilt~gt~~iI~~e~l~~MK~gAIVINvgR--g~vEID~~~L  309 (436)
T 3h9u_A          271 VTTTGNDDIITSEHFPRMRDDAIVCNIGH--FDTEIQVAWL  309 (436)
T ss_dssp             EECSSCSCSBCTTTGGGCCTTEEEEECSS--SGGGBCHHHH
T ss_pred             EECCCCcCccCHHHHhhcCCCcEEEEeCC--CCCccCHHHH
Confidence            9988864443 367788999999998883  3344555444

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.85  E-value=0.00018  Score=55.34  Aligned_cols=81  Identities=23%  Similarity=0.305  Sum_probs=55.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEEeCCC-CcccHHHHHHHHHHHcCCCccE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++++++.+.+ ++++.. .+..+- +.++..+.+.++.+.. +++|+
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~-g~id~   80 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGAR-LVACDIEEGPLREAAEAVGAH-PVVMDVADPASVERGFAEALAHL-GRLDG   80 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTTTCE-EEECCTTCHHHHHHHHHHHHHHH-SSCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHcCCE-EEEecCCCHHHHHHHHHHHHHHc-CCCCE
Confidence            4688999996 89999999999999995 88999998876654 345532 222222 2233344444443333 37999


Q ss_pred             EEEcCCC
Q 048013          172 SFDCAGF  178 (216)
Q Consensus       172 vi~~~g~  178 (216)
                      +|+++|.
T Consensus        81 lvn~Ag~   87 (245)
T 1uls_A           81 VVHYAGI   87 (245)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999983

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.85  E-value=4.2e-05  Score=58.47  Aligned_cols=103  Identities=21%  Similarity=0.262  Sum_probs=70.8

Q ss_pred             HHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHH
Q 048013           86 HACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKI  161 (216)
Q Consensus        86 ~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~  161 (216)
                      ..++...++++++||.+|+| .|..++.+++..+. +|+++|.+++..+.+++    .+...+....   .+...   .+
T Consensus        82 ~~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~---~d~~~---~~  153 (235)
T 1jg1_A           82 IMLEIANLKPGMNILEVGTG-SGWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNVHVIL---GDGSK---GF  153 (235)
T ss_dssp             HHHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSEEEEE---SCGGG---CC
T ss_pred             HHHHhcCCCCCCEEEEEeCC-cCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE---CCccc---CC
Confidence            34455678899999999988 58888889988774 59999999988776654    4543322211   11100   11


Q ss_pred             HHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEe
Q 048013          162 QKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~  198 (216)
                        ..+.++|+|+.+..-......+.+.|+|+|++++.
T Consensus       154 --~~~~~fD~Ii~~~~~~~~~~~~~~~L~pgG~lvi~  188 (235)
T 1jg1_A          154 --PPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIP  188 (235)
T ss_dssp             --GGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             --CCCCCccEEEECCcHHHHHHHHHHhcCCCcEEEEE
Confidence              12345999998777545557888999999988764

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.85  E-value=0.00071  Score=52.27  Aligned_cols=82  Identities=23%  Similarity=0.270  Sum_probs=56.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEE-EeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNI-VKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .++++||+|+ +++|.++++.+...|++ |+++++++++.+.+ ++++.... +..+- +.++..+.+.++.+.. .++|
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g~id   85 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGAK-VVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKF-GKVD   85 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhc-CCCC
Confidence            5689999996 89999999999999995 99999998887654 45554432 22222 2233444444444333 3799


Q ss_pred             EEEEcCCC
Q 048013          171 VSFDCAGF  178 (216)
Q Consensus       171 ~vi~~~g~  178 (216)
                      ++|+++|.
T Consensus        86 ~li~~Ag~   93 (261)
T 3n74_A           86 ILVNNAGI   93 (261)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999873

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.84  E-value=0.00032  Score=55.00  Aligned_cols=106  Identities=17%  Similarity=0.191  Sum_probs=68.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEE-EeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNI-VKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ +++|.++++.+...|++ |+++++++++.+.+    ++.+.... +..+- +.++..+.+.++.+.  .
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~--g  108 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGAH-VILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAI--A  108 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHH--S
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHh--C
Confidence            5789999986 89999999999999995 88898887654432    23344322 22222 223344444554433  5


Q ss_pred             CccEEEEcCCCH----------H---------------HHHHHHHHh--hcCCEEEEeccCCC
Q 048013          168 GIDVSFDCAGFN----------K---------------TMSTALSAT--RAGGKVCLVGMGHR  203 (216)
Q Consensus       168 ~~d~vi~~~g~~----------~---------------~~~~~~~~l--~~~G~~v~~g~~~~  203 (216)
                      ++|++++++|..          +               ..+.+++.|  ...|+++.++....
T Consensus       109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~  171 (275)
T 4imr_A          109 PVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQ  171 (275)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHh
Confidence            799999999841          1               234555555  34689999885443

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=97.84  E-value=0.00059  Score=53.59  Aligned_cols=83  Identities=25%  Similarity=0.350  Sum_probs=54.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChHHHHHH----HHcCCCEE-EeCC-CCcccHHHHHHHHHHHc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV-DDYRLSVA----KKLGADNI-VKVS-TNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~-~~~~~~~~----~~~g~~~~-~~~~-~~~~~~~~~~~~~~~~~  165 (216)
                      ..++++||+|+ |++|.++++.+...|++ |+++++ ++++.+.+    +..+.... +..| .+.++..+.+.++.+..
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  105 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGFD-IAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEF  105 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCCe-EEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            46789999996 89999999999999995 777774 65554432    33444322 2222 23344555555554433


Q ss_pred             CCCccEEEEcCCC
Q 048013          166 GTGIDVSFDCAGF  178 (216)
Q Consensus       166 ~~~~d~vi~~~g~  178 (216)
                      + ++|++|+++|.
T Consensus       106 g-~iD~lvnnAg~  117 (280)
T 4da9_A          106 G-RIDCLVNNAGI  117 (280)
T ss_dssp             S-CCCEEEEECC-
T ss_pred             C-CCCEEEECCCc
Confidence            3 79999999985

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.84  E-value=0.00064  Score=52.50  Aligned_cols=81  Identities=26%  Similarity=0.374  Sum_probs=53.0

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-H---HcCCCE-EEeCCC-CcccHHHHHHHHHHHcCCC
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-K---KLGADN-IVKVST-NLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~---~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~  168 (216)
                      ++++||+|+ |++|..+++.+...|++ |+++++++++.+.+ +   +.+... .+..+- +.++..+.+.++.+.. ++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-g~   79 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFA-VAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTL-GG   79 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHT-TC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh-CC
Confidence            468999996 89999999999999995 88999988765543 2   234332 222222 2233444444443333 47


Q ss_pred             ccEEEEcCCC
Q 048013          169 IDVSFDCAGF  178 (216)
Q Consensus       169 ~d~vi~~~g~  178 (216)
                      +|++|+++|.
T Consensus        80 id~lv~nAg~   89 (256)
T 1geg_A           80 FDVIVNNAGV   89 (256)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.83  E-value=0.00033  Score=54.90  Aligned_cols=81  Identities=21%  Similarity=0.288  Sum_probs=54.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH----cCCCE-EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK----LGADN-IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~----~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ +++|.++++.+...|+ +|++++++.++.+.. ++    .+... .+..+- +.++..+.+.++.+.. 
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-  103 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEF-  103 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            5789999996 8999999999999999 489999998765433 22    24332 222222 2233444455544333 


Q ss_pred             CCccEEEEcCC
Q 048013          167 TGIDVSFDCAG  177 (216)
Q Consensus       167 ~~~d~vi~~~g  177 (216)
                      .++|++++++|
T Consensus       104 g~id~lv~nAg  114 (277)
T 4fc7_A          104 GRIDILINCAA  114 (277)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            37999999998

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=97.83  E-value=0.00026  Score=55.25  Aligned_cols=106  Identities=17%  Similarity=0.256  Sum_probs=66.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChHHHHHH----HHcCCCEE-EeCCC-CcccHHHHHHHHHHHc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIV-DVDDYRLSVA----KKLGADNI-VKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~-~~~~~~~~~~----~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      ..++++||+|+ +++|.++++.+...|++ |+++ .+++++.+.+    +..+.... +..+- +.++..+.+.++.+..
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~-Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  103 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFT-VVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAF  103 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCE-EEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35789999996 89999999999889996 6665 5555544433    33444332 22222 2233444444444333


Q ss_pred             CCCccEEEEcCCCH-------------------------HHHHHHHHHhhcCCEEEEeccC
Q 048013          166 GTGIDVSFDCAGFN-------------------------KTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       166 ~~~~d~vi~~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                       +++|++|+++|..                         ..++.+++.++.+|+++.++..
T Consensus       104 -g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~  163 (267)
T 3u5t_A          104 -GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTS  163 (267)
T ss_dssp             -SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCT
T ss_pred             -CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeCh
Confidence             3799999999841                         1235566667778999988753

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.83  E-value=0.00037  Score=54.75  Aligned_cols=106  Identities=21%  Similarity=0.290  Sum_probs=67.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHH-HH----HHHHcCCCEE-EeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYR-LS----VAKKLGADNI-VKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~-~~----~~~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++ .+    .+++.+.... +..+- +.++..+.+.++.+.. 
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-  105 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF-  105 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            5688999996 89999999999999995 8888777543 22    2334454422 22221 2233334444443333 


Q ss_pred             CCccEEEEcCCCH----------H---------------HHHHHHHHhhcCCEEEEeccCC
Q 048013          167 TGIDVSFDCAGFN----------K---------------TMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       167 ~~~d~vi~~~g~~----------~---------------~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +++|++|+++|..          +               ..+.+++.|+.+|+++.++...
T Consensus       106 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  166 (283)
T 1g0o_A          106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSIT  166 (283)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGG
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechh
Confidence            3799999999841          1               2345556666679999998543

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=97.83  E-value=0.00049  Score=54.08  Aligned_cols=107  Identities=20%  Similarity=0.306  Sum_probs=65.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChHHHHHH-HH---c-CCCEE-EeCCC-CcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV-DDYRLSVA-KK---L-GADNI-VKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~-~~~~~~~~-~~---~-g~~~~-~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++ +.++.+.+ ++   . +.... +..+- +.++..+.+.++.+..
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  102 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGAN-IVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRF  102 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHC
Confidence            4689999996 89999999999999995 888888 54544432 22   2 32222 21221 2233344444444333


Q ss_pred             CCCccEEEEcCCCH----------H---------------HHHHHHHHhh--cCCEEEEeccCCC
Q 048013          166 GTGIDVSFDCAGFN----------K---------------TMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       166 ~~~~d~vi~~~g~~----------~---------------~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                       +++|++++++|..          +               ..+.+++.|.  ..|+++.++....
T Consensus       103 -g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~  166 (281)
T 3v2h_A          103 -GGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHG  166 (281)
T ss_dssp             -SSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             -CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence             4799999999841          1               2344555554  3489998875443

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.83  E-value=0.00028  Score=54.52  Aligned_cols=107  Identities=17%  Similarity=0.264  Sum_probs=68.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEE-EeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNI-VKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .++++||.|+ |++|..+++.+...|++ |+++++++++.+.+ ++++.... +..+- +.++..+.+.++.+.. .++|
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-g~id   82 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGAK-VAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRL-GTLN   82 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHH-CSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHc-CCCC
Confidence            4688999996 89999999999999995 99999998776544 44554322 22221 2223334444443333 3699


Q ss_pred             EEEEcCCCH----------H---------------HHHHHHHHhhc-CCEEEEeccCCC
Q 048013          171 VSFDCAGFN----------K---------------TMSTALSATRA-GGKVCLVGMGHR  203 (216)
Q Consensus       171 ~vi~~~g~~----------~---------------~~~~~~~~l~~-~G~~v~~g~~~~  203 (216)
                      ++|+++|..          +               ..+.+++.|+. +|+++.++....
T Consensus        83 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~g~iv~isS~~~  141 (253)
T 1hxh_A           83 VLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSS  141 (253)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGG
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcCCEEEEEcchhh
Confidence            999999841          1               23455556643 489998875433

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=97.83  E-value=0.00043  Score=54.15  Aligned_cols=108  Identities=20%  Similarity=0.249  Sum_probs=66.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-------------ChHHHHHH----HHcCCCEE-EeCCC-Cccc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV-------------DDYRLSVA----KKLGADNI-VKVST-NLQD  153 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~-------------~~~~~~~~----~~~g~~~~-~~~~~-~~~~  153 (216)
                      -.++++||+|+ +++|.++++.+...|++ |+++++             +.++.+..    +..+.... +..+- +.++
T Consensus         9 l~~k~~lVTGas~GIG~a~a~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~   87 (277)
T 3tsc_A            9 LEGRVAFITGAARGQGRAHAVRMAAEGAD-IIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDR   87 (277)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHcCCE-EEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence            35789999996 89999999999999995 888877             44444332    33344322 22222 2233


Q ss_pred             HHHHHHHHHHHcCCCccEEEEcCCCH----------H---------------HHHHHHHHhhc---CCEEEEeccCCC
Q 048013          154 IAEEVEKIQKAMGTGIDVSFDCAGFN----------K---------------TMSTALSATRA---GGKVCLVGMGHR  203 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~d~vi~~~g~~----------~---------------~~~~~~~~l~~---~G~~v~~g~~~~  203 (216)
                      ..+.+.++.+.. .++|++|+++|..          +               ..+.+++.|..   +|+++.++....
T Consensus        88 v~~~~~~~~~~~-g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~  164 (277)
T 3tsc_A           88 LRKVVDDGVAAL-GRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAG  164 (277)
T ss_dssp             HHHHHHHHHHHH-SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGG
T ss_pred             HHHHHHHHHHHc-CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhh
Confidence            344444444333 3699999999841          0               23445555543   679999886443

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.82  E-value=0.00066  Score=52.59  Aligned_cols=82  Identities=29%  Similarity=0.351  Sum_probs=53.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc----CCCE-EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL----GADN-IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~----g~~~-~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++++++.+.+ +++    +... .+..+- +.++..+.+.++.+.. 
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-   83 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGAH-IVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSF-   83 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            4688999996 89999999999999995 89999998765543 222    4332 222221 2233344444443333 


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      .++|++|+++|.
T Consensus        84 g~id~lv~~Ag~   95 (263)
T 3ai3_A           84 GGADILVNNAGT   95 (263)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999983

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.82  E-value=0.00045  Score=53.44  Aligned_cols=81  Identities=17%  Similarity=0.163  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEE-EeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNI-VKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+    ++.+.... +..+- +.++..+.+.++.+.. +
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g   90 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGAH-VVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLH-G   90 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc-C
Confidence            5789999996 89999999999999995 89999988765433    22343322 22221 2223333444443333 3


Q ss_pred             CccEEEEcCC
Q 048013          168 GIDVSFDCAG  177 (216)
Q Consensus       168 ~~d~vi~~~g  177 (216)
                      ++|++|+++|
T Consensus        91 ~iD~lv~~Ag  100 (260)
T 2zat_A           91 GVDILVSNAA  100 (260)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999987

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.82  E-value=0.00037  Score=54.48  Aligned_cols=108  Identities=20%  Similarity=0.273  Sum_probs=69.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEEE-eCCC-CcccHHHHHHHHHHHcC
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNIV-KVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~~-~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      -.++++||.|+ |++|.++++.+...|++ |++++++.++.+.+    ++.+..... ..|- +.++..+.+.++.+. .
T Consensus        24 l~gk~~lVTGas~gIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~-~  101 (271)
T 4ibo_A           24 LGGRTALVTGSSRGLGRAMAEGLAVAGAR-ILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQ-G  101 (271)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHH-T
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH-C
Confidence            35789999986 89999999999999994 99999998775543    233444322 1111 222334444444433 3


Q ss_pred             CCccEEEEcCCCH----------H---------------HHHHHHHHhh--cCCEEEEeccCCC
Q 048013          167 TGIDVSFDCAGFN----------K---------------TMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       167 ~~~d~vi~~~g~~----------~---------------~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      .++|++++++|..          +               ..+.+++.|.  ..|+++.++....
T Consensus       102 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~  165 (271)
T 4ibo_A          102 IDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTS  165 (271)
T ss_dssp             CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             CCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHh
Confidence            4799999999841          1               2344555554  3579999875443

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=97.82  E-value=0.0002  Score=55.81  Aligned_cols=103  Identities=18%  Similarity=0.161  Sum_probs=66.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCC-CCcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      +|+++||+|+ +++|.++++.+...|++ |+++++++++     .......+..+ .+.++..+.+.+..+.. +++|++
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-G~iDil   82 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGAQ-VLTTARARPE-----GLPEELFVEADLTTKEGCAIVAEATRQRL-GGVDVI   82 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTCE-EEEEESSCCT-----TSCTTTEEECCTTSHHHHHHHHHHHHHHT-SSCSEE
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCCE-EEEEECCchh-----CCCcEEEEEcCCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence            6899999996 89999999999999995 8888887542     11111112111 22334444455554433 479999


Q ss_pred             EEcCCCH---------------------------HHHHHHHHHhh--cCCEEEEeccCCCC
Q 048013          173 FDCAGFN---------------------------KTMSTALSATR--AGGKVCLVGMGHRE  204 (216)
Q Consensus       173 i~~~g~~---------------------------~~~~~~~~~l~--~~G~~v~~g~~~~~  204 (216)
                      ++++|..                           ...+.+++.|.  .+|+++.++.....
T Consensus        83 VnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~  143 (261)
T 4h15_A           83 VHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRV  143 (261)
T ss_dssp             EECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred             EECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhc
Confidence            9988731                           13466677764  46899998865443

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.82  E-value=0.00036  Score=54.25  Aligned_cols=106  Identities=19%  Similarity=0.189  Sum_probs=66.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcC-----CC-EEEeCCC-CcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLG-----AD-NIVKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g-----~~-~~~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+ +++.     .. ..+..+- +.+++.+.+.++.+..
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGAK-VALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            4688999996 89999999999999995 88999988765433 3332     11 1222221 2233344444443333


Q ss_pred             CCCccEEEEcCCCH------H-----------HHHHHHHHhhc-----CCEEEEeccCC
Q 048013          166 GTGIDVSFDCAGFN------K-----------TMSTALSATRA-----GGKVCLVGMGH  202 (216)
Q Consensus       166 ~~~~d~vi~~~g~~------~-----------~~~~~~~~l~~-----~G~~v~~g~~~  202 (216)
                       +++|++|+++|..      .           ..+.+++.|..     .|+++.++...
T Consensus        85 -g~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~  142 (267)
T 2gdz_A           85 -GRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA  142 (267)
T ss_dssp             -SCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred             -CCCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCcc
Confidence             3699999999841      0           23455666643     57899887543

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=97.82  E-value=0.00055  Score=52.87  Aligned_cols=108  Identities=19%  Similarity=0.147  Sum_probs=67.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHH-HHcCCCEE-EeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVA-KKLGADNI-VKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~-~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      ++++||+|+ +++|..+++.+...|. .+|+.+++++++.+.+ ++++.... +..+- +.++..+.+.++.+.. .++|
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~id   80 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGH-GKID   80 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhc-CCcc
Confidence            578999996 8999998887777653 2588888998876655 34544322 22222 2233444445544333 4799


Q ss_pred             EEEEcCCCH--------------------------HHHHHHHHHhh-cCCEEEEeccCCCC
Q 048013          171 VSFDCAGFN--------------------------KTMSTALSATR-AGGKVCLVGMGHRE  204 (216)
Q Consensus       171 ~vi~~~g~~--------------------------~~~~~~~~~l~-~~G~~v~~g~~~~~  204 (216)
                      ++++++|..                          ...+.+++.|+ .+|+++.++.....
T Consensus        81 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~g~iv~isS~~~~  141 (254)
T 3kzv_A           81 SLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTNGNVVFVSSDACN  141 (254)
T ss_dssp             EEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCSCCC
T ss_pred             EEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEcCchhc
Confidence            999998841                          02344555554 36899999865543

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.82  E-value=0.00063  Score=52.13  Aligned_cols=82  Identities=21%  Similarity=0.247  Sum_probs=54.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|..+++.+...|++ |+.+++++++.+.+    ++.+... .+..+- +.++..+.+.++.+ ...
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~   81 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGAT-VVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKA-ENL   81 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH-TTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH-HcC
Confidence            4688999996 89999999999999995 89999998775543    2334432 222222 22333444444433 234


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|+++|.
T Consensus        82 ~id~li~~Ag~   92 (247)
T 3lyl_A           82 AIDILVNNAGI   92 (247)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.82  E-value=0.0003  Score=54.33  Aligned_cols=81  Identities=23%  Similarity=0.254  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChHHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV-DDYRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~-~~~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++ +.++.+.+    ++.+... .+..+- +.++..+.+.++.+.. 
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-   83 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKAK-VVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF-   83 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc-
Confidence            4688999996 99999999999889995 888888 76654432    2234322 222222 2223333444443333 


Q ss_pred             CCccEEEEcCC
Q 048013          167 TGIDVSFDCAG  177 (216)
Q Consensus       167 ~~~d~vi~~~g  177 (216)
                      .++|++|.++|
T Consensus        84 g~id~li~~Ag   94 (261)
T 1gee_A           84 GKLDVMINNAG   94 (261)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            37999999987

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.82  E-value=0.00059  Score=52.50  Aligned_cols=106  Identities=17%  Similarity=0.202  Sum_probs=67.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh-HHHH-HHHHcCCCEE-EeCCC-CcccHHHHHHHHHHHcCCCc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDD-YRLS-VAKKLGADNI-VKVST-NLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~-~~~~-~~~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~  169 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++. ++.+ .+++.+.... +..+- +.++..+.++++.+.. +++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~i   83 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGAD-IAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTF-GRC   83 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-SCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHc-CCC
Confidence            4688999996 89999999999999995 88888887 6544 3455554322 22222 2233334444443333 379


Q ss_pred             cEEEEcCCCH----------H---------------HHHHHHHHhhc--CCEEEEeccCC
Q 048013          170 DVSFDCAGFN----------K---------------TMSTALSATRA--GGKVCLVGMGH  202 (216)
Q Consensus       170 d~vi~~~g~~----------~---------------~~~~~~~~l~~--~G~~v~~g~~~  202 (216)
                      |++|+++|..          +               ..+.+++.|+.  .|+++.++...
T Consensus        84 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~  143 (249)
T 2ew8_A           84 DILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTT  143 (249)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchh
Confidence            9999998831          1               13445555543  58999887543

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.81  E-value=0.00085  Score=52.25  Aligned_cols=107  Identities=18%  Similarity=0.280  Sum_probs=67.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH----cCCCEE-EeCCC-CcccHHHHHHHHHHHc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK----LGADNI-VKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~----~g~~~~-~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      -.++++||+|+ |++|..+++.+...|++ |++++++.++.+.+ ++    .+.... +..+- +.+++.+.+.++.+..
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   97 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEAGCS-VVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF   97 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35789999996 89999999999999995 88999988765433 22    254322 22221 2233344444443333


Q ss_pred             CCCccEEEEcCCCH----------H---------------HHHHHHHHhhc--CCEEEEeccCC
Q 048013          166 GTGIDVSFDCAGFN----------K---------------TMSTALSATRA--GGKVCLVGMGH  202 (216)
Q Consensus       166 ~~~~d~vi~~~g~~----------~---------------~~~~~~~~l~~--~G~~v~~g~~~  202 (216)
                       +++|++|+++|..          +               ..+.+++.|..  .|+++.++...
T Consensus        98 -g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~  160 (267)
T 1vl8_A           98 -GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLT  160 (267)
T ss_dssp             -SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGG
T ss_pred             -CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence             3799999998841          1               12444555543  47999887544

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=97.81  E-value=0.00066  Score=53.31  Aligned_cols=82  Identities=26%  Similarity=0.275  Sum_probs=56.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEE-EeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNI-VKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .++++||+|+ +++|.++++.+...|++ |++++++.++.+.+ ++++.... +..+- +.++..+.+.++.+.. .++|
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~iD   81 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGAR-VAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAF-GKID   81 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhc-CCCC
Confidence            4789999996 89999999999999995 99999998887655 44554432 22221 2233444445544333 3799


Q ss_pred             EEEEcCCC
Q 048013          171 VSFDCAGF  178 (216)
Q Consensus       171 ~vi~~~g~  178 (216)
                      ++++++|.
T Consensus        82 ~lvnnAg~   89 (281)
T 3zv4_A           82 TLIPNAGI   89 (281)
T ss_dssp             EEECCCCC
T ss_pred             EEEECCCc
Confidence            99999984

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.81  E-value=0.00022  Score=56.12  Aligned_cols=107  Identities=19%  Similarity=0.187  Sum_probs=66.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEE--EeCCCCc-ccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNI--VKVSTNL-QDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~--~~~~~~~-~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++++++.+.+    ++.+...+  +..+-.+ ++..+.+.++.+.. 
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~-  104 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGAH-VVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM-  104 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHc-
Confidence            4688999996 99999999999999995 99999998776543    22343222  2222222 23333344443323 


Q ss_pred             CCccEEEEc-CCC---------HH---------------HHHHHHHHhh-cCCEEEEeccCCC
Q 048013          167 TGIDVSFDC-AGF---------NK---------------TMSTALSATR-AGGKVCLVGMGHR  203 (216)
Q Consensus       167 ~~~d~vi~~-~g~---------~~---------------~~~~~~~~l~-~~G~~v~~g~~~~  203 (216)
                      +++|++|++ .|.         .+               ..+.+++.+. .+|+++.++....
T Consensus       105 g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~  167 (286)
T 1xu9_A          105 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAG  167 (286)
T ss_dssp             TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGG
T ss_pred             CCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCccc
Confidence            379999998 442         11               1234444443 4689998875443

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.81  E-value=0.00018  Score=52.12  Aligned_cols=104  Identities=17%  Similarity=0.253  Sum_probs=71.3

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCC-EEEeCCCCcccHHHHHHHHH
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGAD-NIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~  162 (216)
                      ++...++++++||.+|+|. |..++.+++..+..+++++|.+++..+.+++    .+.. .+ .+..+   ..+.+.   
T Consensus        18 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d---~~~~~~---   89 (178)
T 3hm2_A           18 ISALAPKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQG---APRAFD---   89 (178)
T ss_dssp             HHHHCCCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECC---TTGGGG---
T ss_pred             HHHhcccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecc---hHhhhh---
Confidence            4556678899999999885 8888888887643469999999988777654    4544 33 22111   111111   


Q ss_pred             HHcCCCccEEEEcCCC--HHHHHHHHHHhhcCCEEEEecc
Q 048013          163 KAMGTGIDVSFDCAGF--NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~--~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                       .....+|+|+.....  ...++.+.+.|+|+|++++...
T Consensus        90 -~~~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A           90 -DVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             -GCCSCCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEEC
T ss_pred             -ccCCCCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEee
Confidence             112579999976654  2478899999999999997664

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.80  E-value=0.00026  Score=55.16  Aligned_cols=106  Identities=16%  Similarity=0.201  Sum_probs=65.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH---cC-CCEEEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK---LG-ADNIVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~---~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      .++++||+|+ |++|.++++.+...|++ |+++++++++.+.. ++   .+ ...+..+..+..+ .+.++++.+.. .+
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~-g~   85 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGAN-VLINGRREENVNETIKEIRAQYPDAILQPVVADLGT-EQGCQDVIEKY-PK   85 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTS-HHHHHHHHHHC-CC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCC-HHHHHHHHHhc-CC
Confidence            5788999986 89999999999999995 99999998765433 22   22 1222111111111 22233333322 47


Q ss_pred             ccEEEEcCCCH----------H---------------HHHHHHHHhh--cCCEEEEeccCCC
Q 048013          169 IDVSFDCAGFN----------K---------------TMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       169 ~d~vi~~~g~~----------~---------------~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      +|++++++|..          +               ..+.+++.|.  ..|+++.++....
T Consensus        86 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~  147 (267)
T 3t4x_A           86 VDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAA  147 (267)
T ss_dssp             CSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGG
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhh
Confidence            99999999841          1               1345566663  3579998875443

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.80  E-value=0.001  Score=51.83  Aligned_cols=82  Identities=24%  Similarity=0.346  Sum_probs=54.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCCC-cccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVSTN-LQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~~-~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++++++.+.+    ++.+... .+..+-. .++..+.+.++.+.. .
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~-g  107 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKSK-LVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI-G  107 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT-C
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHC-C
Confidence            5689999996 99999999999999995 89999988765543    2234332 2222222 223334444443333 4


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.++|.
T Consensus       108 ~iD~li~~Ag~  118 (272)
T 1yb1_A          108 DVSILVNNAGV  118 (272)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCcEEEECCCc
Confidence            79999999983

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.79  E-value=0.00019  Score=55.71  Aligned_cols=82  Identities=24%  Similarity=0.313  Sum_probs=52.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHH-cCCCeEEEEcCChHHHHHH----HHcCCC-EEEeCCCC-cccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARA-FGAPRIVIVDVDDYRLSVA----KKLGAD-NIVKVSTN-LQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~-~g~~~vv~~~~~~~~~~~~----~~~g~~-~~~~~~~~-~~~~~~~~~~~~~~~~  166 (216)
                      +++++||+|+ |++|..+++.+.. .|++ |++++++.++.+.+    +..+.. ..+..+-. .+++.+.+.++.+.. 
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-   80 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGD-VVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY-   80 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSE-EEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCe-EEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhc-
Confidence            5688999996 9999999988888 8994 88898987665432    222332 22222222 223344444443333 


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      .++|++|.++|.
T Consensus        81 g~id~li~~Ag~   92 (276)
T 1wma_A           81 GGLDVLVNNAGI   92 (276)
T ss_dssp             SSEEEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            379999999873

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=97.79  E-value=0.00076  Score=52.84  Aligned_cols=83  Identities=27%  Similarity=0.340  Sum_probs=53.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC------------hHHHH----HHHHcCCCEE-EeCCC-CcccH
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVD------------DYRLS----VAKKLGADNI-VKVST-NLQDI  154 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~------------~~~~~----~~~~~g~~~~-~~~~~-~~~~~  154 (216)
                      -.++++||+|+ |++|.++++.+...|++ |++++++            .++.+    .+++.+.... +..+- +.++.
T Consensus         8 l~~k~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v   86 (281)
T 3s55_A            8 FEGKTALITGGARGMGRSHAVALAEAGAD-IAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAAL   86 (281)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence            35789999996 89999999999999995 8888886            33332    2334454432 22222 22334


Q ss_pred             HHHHHHHHHHcCCCccEEEEcCCC
Q 048013          155 AEEVEKIQKAMGTGIDVSFDCAGF  178 (216)
Q Consensus       155 ~~~~~~~~~~~~~~~d~vi~~~g~  178 (216)
                      .+.++++.+.. +++|++++++|.
T Consensus        87 ~~~~~~~~~~~-g~id~lv~nAg~  109 (281)
T 3s55_A           87 ESFVAEAEDTL-GGIDIAITNAGI  109 (281)
T ss_dssp             HHHHHHHHHHH-TCCCEEEECCCC
T ss_pred             HHHHHHHHHhc-CCCCEEEECCCC
Confidence            44444444333 379999999984

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=97.79  E-value=0.00012  Score=56.88  Aligned_cols=105  Identities=13%  Similarity=0.178  Sum_probs=63.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh---HHHHHH-HH---cCCCEE-EeCCC-CcccHHHHHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDD---YRLSVA-KK---LGADNI-VKVST-NLQDIAEEVEKIQKA  164 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~---~~~~~~-~~---~g~~~~-~~~~~-~~~~~~~~~~~~~~~  164 (216)
                      .++++||+|+ +++|.++++.+...|++ |++++++.   ++.+.+ ++   .+.... +..|- +.++..+.+.++.+.
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   88 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESVN-LVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKE   88 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSCE-EEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            5789999996 89999999999999995 77775543   333322 22   233321 22221 223334444444433


Q ss_pred             cCCCccEEEEcCCCH----------H---------------HHHHHHHHhhcCCEEEEeccC
Q 048013          165 MGTGIDVSFDCAGFN----------K---------------TMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       165 ~~~~~d~vi~~~g~~----------~---------------~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      . .++|++++++|..          +               ..+.+++.|+.+|+++.++..
T Consensus        89 ~-g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~  149 (262)
T 3ksu_A           89 F-GKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATS  149 (262)
T ss_dssp             H-CSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCC
T ss_pred             c-CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEech
Confidence            3 4799999999831          1               223444455567899988753

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.79  E-value=0.00037  Score=54.78  Aligned_cols=106  Identities=19%  Similarity=0.237  Sum_probs=67.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc---CCCEEE-eCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL---GADNIV-KVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~---g~~~~~-~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|.++++.+...|++ |+++++++++.+.+ +++   +..... ..+- +.++..+.+.++.+.. +
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g   84 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGAK-VVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRF-G   84 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc-C
Confidence            5789999996 89999999999999995 99999998876654 333   332221 1111 1223333444443333 3


Q ss_pred             CccEEEEcCCCH-----------H---------------HHHHHHHHhhc--CCEEEEeccCC
Q 048013          168 GIDVSFDCAGFN-----------K---------------TMSTALSATRA--GGKVCLVGMGH  202 (216)
Q Consensus       168 ~~d~vi~~~g~~-----------~---------------~~~~~~~~l~~--~G~~v~~g~~~  202 (216)
                      ++|++|+++|..           +               ..+.+++.+..  +|+++.++...
T Consensus        85 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~  147 (280)
T 3tox_A           85 GLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFV  147 (280)
T ss_dssp             CCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChh
Confidence            799999999831           1               23445555544  57999887543

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.79  E-value=0.00017  Score=56.59  Aligned_cols=107  Identities=16%  Similarity=0.132  Sum_probs=69.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+ ++++... .+..+- +.++..+.+.++.+.. .++|
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~-g~id   81 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDT-VIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARY-GRVD   81 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHH-SCCS
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhC-CCCC
Confidence            4678999986 99999999999999994 89999998776554 4454432 222222 2233344444444333 3699


Q ss_pred             EEEEcCCCH----------H---------------HHHHHHHHhh--cCCEEEEeccCCC
Q 048013          171 VSFDCAGFN----------K---------------TMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       171 ~vi~~~g~~----------~---------------~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      ++|.++|..          +               ..+.+++.++  ..|+++.++....
T Consensus        82 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~  141 (281)
T 3m1a_A           82 VLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGG  141 (281)
T ss_dssp             EEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             EEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccc
Confidence            999999841          1               1455566654  3579998885443

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=97.79  E-value=0.00034  Score=53.93  Aligned_cols=102  Identities=19%  Similarity=0.253  Sum_probs=64.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCC-CcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.+.    ++.+. ..+..+- +.++..+.++++.+.. .++|++
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~----~~~~~-~~~~~D~~d~~~~~~~~~~~~~~~-g~id~l   78 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGAK-VTGFDQAFTQ----EQYPF-ATEVMDVADAAQVAQVCQRLLAET-ERLDAL   78 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCCCS----SCCSS-EEEECCTTCHHHHHHHHHHHHHHC-SCCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCchhh----hcCCc-eEEEcCCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence            4688999996 89999999999999995 8888887652    22332 2222222 2233444444444333 479999


Q ss_pred             EEcCCCH----------H---------------HHHHHHHHhh--cCCEEEEeccCCC
Q 048013          173 FDCAGFN----------K---------------TMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       173 i~~~g~~----------~---------------~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      |+++|..          +               ..+.+++.|.  ..|+++.++....
T Consensus        79 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~  136 (250)
T 2fwm_X           79 VNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAA  136 (250)
T ss_dssp             EECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGG
T ss_pred             EECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhh
Confidence            9999841          1               2344555553  3689998875443

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=97.79  E-value=0.00032  Score=55.53  Aligned_cols=107  Identities=17%  Similarity=0.163  Sum_probs=67.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh--HHHHH----HHHcCCCEEEe-CCC-CcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDD--YRLSV----AKKLGADNIVK-VST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~--~~~~~----~~~~g~~~~~~-~~~-~~~~~~~~~~~~~~~~  165 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.  +..+.    +++.+...... .+- +.++..+.+.++.+..
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  126 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGAD-VAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL  126 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            5789999996 89999999999999995 88887762  22222    23445443321 111 2223333444444333


Q ss_pred             CCCccEEEEcCCCH--------------------------HHHHHHHHHhhcCCEEEEeccCCC
Q 048013          166 GTGIDVSFDCAGFN--------------------------KTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       166 ~~~~d~vi~~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                       .++|++++++|..                          ...+.+++.++.+|+++.++....
T Consensus       127 -g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~  189 (294)
T 3r3s_A          127 -GGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQA  189 (294)
T ss_dssp             -TCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGG
T ss_pred             -CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhh
Confidence             3799999998841                          123445556667899999986443

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.79  E-value=0.00012  Score=56.92  Aligned_cols=83  Identities=19%  Similarity=0.298  Sum_probs=53.5

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcC---CCeEEEEcCChHHHHHHHHc---CCC-EEEeCC-CCcccHHHHHHHHHHH
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFG---APRIVIVDVDDYRLSVAKKL---GAD-NIVKVS-TNLQDIAEEVEKIQKA  164 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g---~~~vv~~~~~~~~~~~~~~~---g~~-~~~~~~-~~~~~~~~~~~~~~~~  164 (216)
                      .+++++||+|+ |++|..+++.+...|   + +|++++++.++.+.++++   +.. ..+..+ .+.++..+.+.++.+.
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   97 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGV   97 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCc-EEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHHHh
Confidence            45678999996 999999999999889   6 588998887654333322   322 222222 2233444555555433


Q ss_pred             cCC-CccEEEEcCC
Q 048013          165 MGT-GIDVSFDCAG  177 (216)
Q Consensus       165 ~~~-~~d~vi~~~g  177 (216)
                      .+. ++|++|.++|
T Consensus        98 ~g~~~id~li~~Ag  111 (267)
T 1sny_A           98 TKDQGLNVLFNNAG  111 (267)
T ss_dssp             HGGGCCSEEEECCC
T ss_pred             cCCCCccEEEECCC
Confidence            332 6999999987

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.78  E-value=0.00015  Score=50.62  Aligned_cols=77  Identities=13%  Similarity=0.244  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      +.++|+|+|+|.+|...++.+...|.+ |+++++++++.+.+++.+... +..+.  .+ .+.+.+.   .-.++|+++.
T Consensus         5 ~~~~v~I~G~G~iG~~~a~~l~~~g~~-v~~~d~~~~~~~~~~~~~~~~-~~~d~--~~-~~~l~~~---~~~~~d~vi~   76 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHRMGHE-VLAVDINEEKVNAYASYATHA-VIANA--TE-ENELLSL---GIRNFEYVIV   76 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCC-CEEEESCHHHHHTTTTTCSEE-EECCT--TC-HHHHHTT---TGGGCSEEEE
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHhCCEE-EEeCC--CC-HHHHHhc---CCCCCCEEEE
Confidence            356799999999999999999999986 888999988776665555432 22111  12 1222221   1246999999


Q ss_pred             cCCCH
Q 048013          175 CAGFN  179 (216)
Q Consensus       175 ~~g~~  179 (216)
                      +++.+
T Consensus        77 ~~~~~   81 (144)
T 2hmt_A           77 AIGAN   81 (144)
T ss_dssp             CCCSC
T ss_pred             CCCCc
Confidence            99973

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.78  E-value=0.00054  Score=53.71  Aligned_cols=105  Identities=21%  Similarity=0.292  Sum_probs=66.5

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC------------hHHHHH----HHHcCCCEE-EeCCC-CcccH
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVD------------DYRLSV----AKKLGADNI-VKVST-NLQDI  154 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~------------~~~~~~----~~~~g~~~~-~~~~~-~~~~~  154 (216)
                      -.++++||+|+ |++|..+++.+...|++ |++++++            .++.+.    ++..+.... +..+- +.++.
T Consensus         8 l~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v   86 (287)
T 3pxx_A            8 VQDKVVLVTGGARGQGRSHAVKLAEEGAD-IILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAV   86 (287)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCe-EEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHH
Confidence            35789999996 89999999999999995 8888876            444333    233444332 22222 22333


Q ss_pred             HHHHHHHHHHcCCCccEEEEcCCCH--------H---------------HHHHHHHHhhcCCEEEEecc
Q 048013          155 AEEVEKIQKAMGTGIDVSFDCAGFN--------K---------------TMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       155 ~~~~~~~~~~~~~~~d~vi~~~g~~--------~---------------~~~~~~~~l~~~G~~v~~g~  200 (216)
                      .+.+.++.+.. .++|++|+++|..        +               ..+.+++.|..+|+++.++.
T Consensus        87 ~~~~~~~~~~~-g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  154 (287)
T 3pxx_A           87 SRELANAVAEF-GKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS  154 (287)
T ss_dssp             HHHHHHHHHHH-SCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHHHHHHHHHc-CCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence            44444444333 3799999998841        1               22444455566789998875

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.77  E-value=0.00016  Score=55.75  Aligned_cols=105  Identities=18%  Similarity=0.118  Sum_probs=73.5

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHHHc-----CCCEEEeCCCCcccHHHHHHH
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAKKL-----GADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~  160 (216)
                      .++...++++++||.+|+|. |..++.+++..+ ..+++++|.+++..+.+++.     |...+.....   ++.+.  .
T Consensus        88 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~---d~~~~--~  161 (258)
T 2pwy_A           88 MVTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLG---KLEEA--E  161 (258)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEES---CGGGC--C
T ss_pred             HHHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEEC---chhhc--C
Confidence            44566788999999999885 888888888854 23699999999888777553     5333222111   21110  0


Q ss_pred             HHHHcCCCccEEEEcCCCH-HHHHHHHHHhhcCCEEEEecc
Q 048013          161 IQKAMGTGIDVSFDCAGFN-KTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~-~~~~~~~~~l~~~G~~v~~g~  200 (216)
                         .....+|+|+...... ..++.+.+.|+|+|+++++..
T Consensus       162 ---~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  199 (258)
T 2pwy_A          162 ---LEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLP  199 (258)
T ss_dssp             ---CCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             ---CCCCCcCEEEECCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence               1234699999877764 677889999999999998753

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.77  E-value=0.00048  Score=53.45  Aligned_cols=82  Identities=26%  Similarity=0.331  Sum_probs=54.3

Q ss_pred             CCCEEEEEcC-C-HHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc---CCCE--EEeCCC-CcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-G-PIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL---GADN--IVKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g-~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~---g~~~--~~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      .++++||+|+ | ++|..+++.+...|++ |++++++.++.+.+ +++   +...  .+..|- +.++..+.+.++.+..
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   99 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGAD-VVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKA   99 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCE-EEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence            5789999997 7 7999999999889995 99999998775543 222   2222  222222 2233444445544333


Q ss_pred             CCCccEEEEcCCC
Q 048013          166 GTGIDVSFDCAGF  178 (216)
Q Consensus       166 ~~~~d~vi~~~g~  178 (216)
                       .++|++|+++|.
T Consensus       100 -g~id~li~~Ag~  111 (266)
T 3o38_A          100 -GRLDVLVNNAGL  111 (266)
T ss_dssp             -SCCCEEEECCCC
T ss_pred             -CCCcEEEECCCc
Confidence             379999999984

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.77  E-value=0.00036  Score=53.61  Aligned_cols=79  Identities=19%  Similarity=0.354  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++++++.+.+.++.....+..+-.+.+   .+.++.+.. .++|++|
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~~~~-~~id~lv   79 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGAK-VIATDINESKLQELEKYPGIQTRVLDVTKKK---QIDQFANEV-ERLDVLF   79 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHGGGGGSTTEEEEECCTTCHH---HHHHHHHHC-SCCSEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHhccCceEEEeeCCCHH---HHHHHHHHh-CCCCEEE
Confidence            4688999996 89999999999999994 9999999877654433321122222222222   223332222 4799999


Q ss_pred             EcCCC
Q 048013          174 DCAGF  178 (216)
Q Consensus       174 ~~~g~  178 (216)
                      +++|.
T Consensus        80 ~~Ag~   84 (246)
T 2ag5_A           80 NVAGF   84 (246)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            99883

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.77  E-value=0.00097  Score=52.83  Aligned_cols=83  Identities=19%  Similarity=0.252  Sum_probs=53.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC------------hHHHHH----HHHcCCCEE-EeCCC-CcccH
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVD------------DYRLSV----AKKLGADNI-VKVST-NLQDI  154 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~------------~~~~~~----~~~~g~~~~-~~~~~-~~~~~  154 (216)
                      -.++++||+|+ +++|.++++.+...|++ |++++++            .++.+.    +++.+.... +..+- +.++.
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v  104 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLAREGAD-IIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAM  104 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence            35789999996 89999999999999995 8888776            444332    334454432 22222 22333


Q ss_pred             HHHHHHHHHHcCCCccEEEEcCCC
Q 048013          155 AEEVEKIQKAMGTGIDVSFDCAGF  178 (216)
Q Consensus       155 ~~~~~~~~~~~~~~~d~vi~~~g~  178 (216)
                      .+.+.++.+.. +++|++|+++|.
T Consensus       105 ~~~~~~~~~~~-g~iD~lv~nAg~  127 (299)
T 3t7c_A          105 QAAVDDGVTQL-GRLDIVLANAAL  127 (299)
T ss_dssp             HHHHHHHHHHH-SCCCEEEECCCC
T ss_pred             HHHHHHHHHHh-CCCCEEEECCCC
Confidence            44444444333 379999999883

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=97.76  E-value=0.00075  Score=53.00  Aligned_cols=107  Identities=18%  Similarity=0.233  Sum_probs=66.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC----------------hHHHHHH----HHcCCCEE-EeCCC-Cc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVD----------------DYRLSVA----KKLGADNI-VKVST-NL  151 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~----------------~~~~~~~----~~~g~~~~-~~~~~-~~  151 (216)
                      .++++||+|+ +++|.++++.+...|++ |++++++                .++.+.+    +..+.... +..+- +.
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   88 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGAD-IIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDY   88 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCH
Confidence            5789999996 89999999999999995 8888776                4444433    22343322 22222 22


Q ss_pred             ccHHHHHHHHHHHcCCCccEEEEcCCCH-----------H---------------HHHHHHHHhhc---CCEEEEeccCC
Q 048013          152 QDIAEEVEKIQKAMGTGIDVSFDCAGFN-----------K---------------TMSTALSATRA---GGKVCLVGMGH  202 (216)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~d~vi~~~g~~-----------~---------------~~~~~~~~l~~---~G~~v~~g~~~  202 (216)
                      ++..+.++++.+.. +++|++|+++|..           +               ..+.+++.|..   +|+++.++...
T Consensus        89 ~~v~~~~~~~~~~~-g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~  167 (286)
T 3uve_A           89 DALKAAVDSGVEQL-GRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVG  167 (286)
T ss_dssp             HHHHHHHHHHHHHH-SCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHh-CCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchh
Confidence            33444445444333 3799999999831           1               23445555533   67999988544


Q ss_pred             C
Q 048013          203 R  203 (216)
Q Consensus       203 ~  203 (216)
                      .
T Consensus       168 ~  168 (286)
T 3uve_A          168 G  168 (286)
T ss_dssp             G
T ss_pred             h
Confidence            3

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.76  E-value=0.00042  Score=54.86  Aligned_cols=82  Identities=24%  Similarity=0.311  Sum_probs=54.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc---CCCE--EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL---GADN--IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~---g~~~--~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ |++|.++++.+...|++ |++++++.++.+.+ +++   +...  .+..+- +.++..+.+.++.+.. 
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-  117 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGAN-VAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAF-  117 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHc-
Confidence            5789999986 89999999999999994 89999998775543 333   3112  222222 2233344444444333 


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      +++|++|+++|.
T Consensus       118 g~iD~lvnnAg~  129 (293)
T 3rih_A          118 GALDVVCANAGI  129 (293)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999984

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.75  E-value=0.00057  Score=51.12  Aligned_cols=92  Identities=14%  Similarity=0.251  Sum_probs=62.9

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      +|||+|+ |.+|..+++.+...|. .|++++++.++.+.+. -+.. .+..+-.+.+.    ..+     .++|+||.++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~-~~~~-~~~~D~~d~~~----~~~-----~~~d~vi~~a   69 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNAGKITQTH-KDIN-ILQKDIFDLTL----SDL-----SDQNVVVDAY   69 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCSHHHHHHC-SSSE-EEECCGGGCCH----HHH-----TTCSEEEECC
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCchhhhhcc-CCCe-EEeccccChhh----hhh-----cCCCEEEECC
Confidence            6899996 9999999999999998 4999999987766553 2332 23222222222    222     3699999999


Q ss_pred             CCH--------HHHHHHHHHhhcC--CEEEEeccC
Q 048013          177 GFN--------KTMSTALSATRAG--GKVCLVGMG  201 (216)
Q Consensus       177 g~~--------~~~~~~~~~l~~~--G~~v~~g~~  201 (216)
                      |..        .....+++.++..  ++++.++..
T Consensus        70 g~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           70 GISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             CSSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             cCCccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence            862        3446677777654  688888753

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.75  E-value=0.0007  Score=51.36  Aligned_cols=102  Identities=14%  Similarity=0.142  Sum_probs=64.3

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-HcCCCE-EEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KLGADN-IVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      +++||.|+ |++|.++++.+...|++ |+++++++++.+.+. +++... .+..+-.  + .+.+.++.+.....+|+++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~--~-~~~v~~~~~~~~~~~d~lv   77 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKA-TYLTGRSESKLSTVTNCLSNNVGYRARDLA--S-HQEVEQLFEQLDSIPSTVV   77 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCC-EEEEESCHHHHHHHHHTCSSCCCEEECCTT--C-HHHHHHHHHSCSSCCSEEE
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhhccCeEeecCC--C-HHHHHHHHHHHhhcCCEEE
Confidence            46899986 89999999999999996 999999998877654 443321 2222211  2 2233433333344569999


Q ss_pred             EcCCCH----------H---------------HHHHHHHHhhc-CCEEEEeccCC
Q 048013          174 DCAGFN----------K---------------TMSTALSATRA-GGKVCLVGMGH  202 (216)
Q Consensus       174 ~~~g~~----------~---------------~~~~~~~~l~~-~G~~v~~g~~~  202 (216)
                      +++|..          +               ..+.+++.+.. +++++.++...
T Consensus        78 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~  132 (230)
T 3guy_A           78 HSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTA  132 (230)
T ss_dssp             ECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGG
T ss_pred             EeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecc
Confidence            999831          1               23455556654 45888887543

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.75  E-value=0.00057  Score=55.48  Aligned_cols=107  Identities=23%  Similarity=0.258  Sum_probs=69.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHH-----------HHHHHHcCCCEE-EeCCC-CcccHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYR-----------LSVAKKLGADNI-VKVST-NLQDIAEEVEK  160 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~-----------~~~~~~~g~~~~-~~~~~-~~~~~~~~~~~  160 (216)
                      .++++||+|+ +++|.++++.+...|++ |++++++.++           .+.+++.+.... +..|- +.++..+.+.+
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga~-Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~  122 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGAN-IVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEK  122 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCCE-EEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence            5789999996 89999999999999995 8888887653           233344554332 22222 22334444555


Q ss_pred             HHHHcCCCccEEEEcCCCH-------------------------HHHHHHHHHhhc--CCEEEEeccCCC
Q 048013          161 IQKAMGTGIDVSFDCAGFN-------------------------KTMSTALSATRA--GGKVCLVGMGHR  203 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~~~~  203 (216)
                      +.+..+ ++|++|+++|..                         ...+.+++.|+.  .|+++.++....
T Consensus       123 ~~~~~g-~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~  191 (346)
T 3kvo_A          123 AIKKFG-GIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLN  191 (346)
T ss_dssp             HHHHHS-CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCC
T ss_pred             HHHHcC-CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
Confidence            543333 799999999841                         123556666654  489999886443

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=97.75  E-value=0.00053  Score=53.97  Aligned_cols=81  Identities=14%  Similarity=0.133  Sum_probs=51.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh-HHHHHH-H----HcCCCE-EEeCCCC-----cccHHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDD-YRLSVA-K----KLGADN-IVKVSTN-----LQDIAEEVEKI  161 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~-~~~~~~-~----~~g~~~-~~~~~~~-----~~~~~~~~~~~  161 (216)
                      .++++||+|+ |++|.++++.+...|++ |++++++. ++.+.+ +    +.+... .+..+-.     .++..+.+.++
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~-V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~  100 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYR-VVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSC  100 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCE-EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHH
Confidence            4688999996 89999999999989995 88888887 554432 2    234332 2222222     22333344444


Q ss_pred             HHHcCCCccEEEEcCC
Q 048013          162 QKAMGTGIDVSFDCAG  177 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g  177 (216)
                      .+.. +++|++|+++|
T Consensus       101 ~~~~-g~iD~lvnnAG  115 (288)
T 2x9g_A          101 FRAF-GRCDVLVNNAS  115 (288)
T ss_dssp             HHHH-SCCCEEEECCC
T ss_pred             HHhc-CCCCEEEECCC
Confidence            3333 37999999987

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.74  E-value=0.00042  Score=53.65  Aligned_cols=106  Identities=23%  Similarity=0.290  Sum_probs=66.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHH-HHHH-HHc----CCCEE-EeCCC-CcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYR-LSVA-KKL----GADNI-VKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~-~~~~-~~~----g~~~~-~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++ .+.+ +++    +.... +..+- +.+++.+.+.++.+..
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   81 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGAD-IVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCE-EEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            4688999996 89999999999999995 8888888766 4433 222    43322 21221 2223334444443333


Q ss_pred             CCCccEEEEcCCCH----------H---------------HHHHHHHHhh--cCCEEEEeccCC
Q 048013          166 GTGIDVSFDCAGFN----------K---------------TMSTALSATR--AGGKVCLVGMGH  202 (216)
Q Consensus       166 ~~~~d~vi~~~g~~----------~---------------~~~~~~~~l~--~~G~~v~~g~~~  202 (216)
                       .++|++|+++|..          +               ..+.+++.|+  ..|+++.++...
T Consensus        82 -g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~  144 (260)
T 1x1t_A           82 -GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAH  144 (260)
T ss_dssp             -SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred             -CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHH
Confidence             3799999998731          1               2344555553  358999987543

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.74  E-value=0.001  Score=50.73  Aligned_cols=79  Identities=25%  Similarity=0.225  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      +++++||+|+ |++|..+++.+...|++ |++++++.++.+.+ +++.....+..+-.  +. +.+.++.+ ...++|++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~D~~--~~-~~~~~~~~-~~~~id~v   80 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGAR-VVAVSRTQADLDSLVRECPGIEPVCVDLG--DW-EATERALG-SVGPVDLL   80 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHSTTCEEEECCTT--CH-HHHHHHHT-TCCCCCEE
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHcCCCCEEEEeCC--CH-HHHHHHHH-HcCCCCEE
Confidence            5789999996 99999999999999995 88999998776644 34432233332222  22 22333322 12469999


Q ss_pred             EEcCCC
Q 048013          173 FDCAGF  178 (216)
Q Consensus       173 i~~~g~  178 (216)
                      |+++|.
T Consensus        81 i~~Ag~   86 (244)
T 3d3w_A           81 VNNAAV   86 (244)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999883

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=97.74  E-value=0.00022  Score=55.09  Aligned_cols=99  Identities=17%  Similarity=0.244  Sum_probs=65.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCC-CCcccHHHHHHHHHHHcCCCccEEE
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      ++++||+|+ |++|..+++.+...|++ |++++++.++.+.       ..+..+ .+.++..+.+.++.+ ...++|++|
T Consensus        22 ~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~~~~~~~-------~~~~~d~~d~~~v~~~~~~~~~-~~g~iD~li   92 (251)
T 3orf_A           22 SKNILVLGGSGALGAEVVKFFKSKSWN-TISIDFRENPNAD-------HSFTIKDSGEEEIKSVIEKINS-KSIKVDTFV   92 (251)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCTTSS-------EEEECSCSSHHHHHHHHHHHHT-TTCCEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCcccccc-------cceEEEeCCHHHHHHHHHHHHH-HcCCCCEEE
Confidence            578999996 89999999999999995 8999888765321       112222 223334444444433 234799999


Q ss_pred             EcCCCH--------------------------HHHHHHHHHhhcCCEEEEeccCCC
Q 048013          174 DCAGFN--------------------------KTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       174 ~~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      .++|..                          ...+.+++.++.+|+++.++....
T Consensus        93 ~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  148 (251)
T 3orf_A           93 CAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAA  148 (251)
T ss_dssp             ECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred             ECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhh
Confidence            999830                          023455666667889999885443

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=97.73  E-value=6.7e-05  Score=54.95  Aligned_cols=102  Identities=17%  Similarity=0.238  Sum_probs=66.5

Q ss_pred             HcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHc
Q 048013           90 RANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        90 ~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      ...++++++||-+|+|. |..++.+++. +. +|+++|.+++..+.+++    .+...+........+    +..   ..
T Consensus        17 ~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~----l~~---~~   86 (185)
T 3mti_A           17 AEVLDDESIVVDATMGN-GNDTAFLAGL-SK-KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHEN----LDH---YV   86 (185)
T ss_dssp             HTTCCTTCEEEESCCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGG----GGG---TC
T ss_pred             HHhCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHH----HHh---hc
Confidence            34578899999999875 7777888876 66 59999999988776643    354333222111111    111   12


Q ss_pred             CCCccEEEEcCCC---------------HHHHHHHHHHhhcCCEEEEeccC
Q 048013          166 GTGIDVSFDCAGF---------------NKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       166 ~~~~d~vi~~~g~---------------~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      ...||+|+.+.+-               ...++.+.+.|+|+|+++++-..
T Consensus        87 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           87 REPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             CSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             cCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            4579999876421               12357788999999999887654

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=97.73  E-value=0.00036  Score=54.43  Aligned_cols=82  Identities=21%  Similarity=0.273  Sum_probs=52.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChHHHHH----HHHcCCCE-EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV-DDYRLSV----AKKLGADN-IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~-~~~~~~~----~~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++ +++..+.    +++.+... .+..+- +.++..+.+.++.+.. 
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-  105 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLK-VWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSD-  105 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhc-
Confidence            5789999996 89999999999999995 888877 4444333    23344432 222222 2233344444444333 


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      .++|++|.++|.
T Consensus       106 g~id~li~nAg~  117 (271)
T 4iin_A          106 GGLSYLVNNAGV  117 (271)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999984

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.72  E-value=0.0012  Score=51.57  Aligned_cols=82  Identities=18%  Similarity=0.225  Sum_probs=54.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-H---HcCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-K---KLGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~---~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++++++.+.+ +   +.+... .+..+- +.++..+.+.++.+.. +
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g   98 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLR-VFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERY-G   98 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT-C
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHh-C
Confidence            4688999996 89999999999999995 89999998765433 2   234332 222221 2233344444443333 4


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|+++|.
T Consensus        99 ~iD~lv~~Ag~  109 (277)
T 2rhc_B           99 PVDVLVNNAGR  109 (277)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999973

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.72  E-value=0.00025  Score=53.96  Aligned_cols=98  Identities=15%  Similarity=0.159  Sum_probs=65.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      .+++|||+|+ |.+|..+++.+...|+ .|++++++.++.+.+...+....+..+-. +    .+.+    .-.++|++|
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~-~----~~~~----~~~~~D~vi   89 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRERGASDIVVANLE-E----DFSH----AFASIDAVV   89 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHTTCSEEEECCTT-S----CCGG----GGTTCSEEE
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHhCCCceEEEcccH-H----HHHH----HHcCCCEEE
Confidence            5789999996 9999999999999998 49999999988877776666222222211 1    1222    123799999


Q ss_pred             EcCCCH-------------HHHHHHHHHhhc--CCEEEEeccCC
Q 048013          174 DCAGFN-------------KTMSTALSATRA--GGKVCLVGMGH  202 (216)
Q Consensus       174 ~~~g~~-------------~~~~~~~~~l~~--~G~~v~~g~~~  202 (216)
                      .++|..             .....+++.++.  .++++.++...
T Consensus        90 ~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~  133 (236)
T 3e8x_A           90 FAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVG  133 (236)
T ss_dssp             ECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred             ECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence            999852             112344455433  36899887543

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.72  E-value=0.00098  Score=52.07  Aligned_cols=107  Identities=18%  Similarity=0.282  Sum_probs=67.5

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC------------hHHHHH----HHHcCCCEE-EeCCC-CcccH
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVD------------DYRLSV----AKKLGADNI-VKVST-NLQDI  154 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~------------~~~~~~----~~~~g~~~~-~~~~~-~~~~~  154 (216)
                      -.++++||+|+ |++|..+++.+...|++ |++++++            .++.+.    ++..+.... +..+- +.++.
T Consensus        11 l~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v   89 (278)
T 3sx2_A           11 LTGKVAFITGAARGQGRAHAVRLAADGAD-IIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESL   89 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence            35789999996 89999999999999995 8888876            444332    233454432 22222 22334


Q ss_pred             HHHHHHHHHHcCCCccEEEEcCCCH------H---------------HHHHHHHHhhc---CCEEEEeccCC
Q 048013          155 AEEVEKIQKAMGTGIDVSFDCAGFN------K---------------TMSTALSATRA---GGKVCLVGMGH  202 (216)
Q Consensus       155 ~~~~~~~~~~~~~~~d~vi~~~g~~------~---------------~~~~~~~~l~~---~G~~v~~g~~~  202 (216)
                      .+.+.++.+.. .++|++|+++|..      +               ..+.+++.|..   +|+++.++...
T Consensus        90 ~~~~~~~~~~~-g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~  160 (278)
T 3sx2_A           90 SAALQAGLDEL-GRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSA  160 (278)
T ss_dssp             HHHHHHHHHHH-CCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGG
T ss_pred             HHHHHHHHHHc-CCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Confidence            44455444333 3799999999841      1               23455555533   68999887544

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.72  E-value=0.00052  Score=51.65  Aligned_cols=98  Identities=18%  Similarity=0.130  Sum_probs=63.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHH-HcCCCeEEEEcCChH-HHHHHHHcCCC-EEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           97 TNVLIMGS-GPIGLVTMLAAR-AFGAPRIVIVDVDDY-RLSVAKKLGAD-NIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~-~~g~~~vv~~~~~~~-~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      ++|||+|+ |.+|..+++.+. ..|++ |++++++++ +.+.+...+.. ..+..+-  .+ .+.+.++.    .++|++
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~--~d-~~~~~~~~----~~~d~v   77 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMH-ITLYGRQLKTRIPPEIIDHERVTVIEGSF--QN-PGXLEQAV----TNAEVV   77 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCE-EEEEESSHHHHSCHHHHTSTTEEEEECCT--TC-HHHHHHHH----TTCSEE
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCce-EEEEecCccccchhhccCCCceEEEECCC--CC-HHHHHHHH----cCCCEE
Confidence            46999996 999999998888 79994 999999987 66555323332 2222221  12 12333332    378999


Q ss_pred             EEcCCCHHH-HHHHHHHhhcC--CEEEEeccCC
Q 048013          173 FDCAGFNKT-MSTALSATRAG--GKVCLVGMGH  202 (216)
Q Consensus       173 i~~~g~~~~-~~~~~~~l~~~--G~~v~~g~~~  202 (216)
                      |+++|.... .+.+++.++..  ++++.++...
T Consensus        78 v~~ag~~n~~~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           78 FVGAMESGSDMASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             EESCCCCHHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred             EEcCCCCChhHHHHHHHHHhcCCCeEEEEeece
Confidence            999996211 56667776544  5898887544

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.71  E-value=6.3e-05  Score=56.27  Aligned_cols=101  Identities=18%  Similarity=0.173  Sum_probs=68.9

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHH
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~  162 (216)
                      .++...++++++||.+|+|. |..++.+++. +. +|+++|.+++..+.+++    .+...+.....   +..+.   . 
T Consensus        69 ~~~~l~~~~~~~vLdiG~G~-G~~~~~la~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~---d~~~~---~-  138 (210)
T 3lbf_A           69 MTELLELTPQSRVLEIGTGS-GYQTAILAHL-VQ-HVCSVERIKGLQWQARRRLKNLDLHNVSTRHG---DGWQG---W-  138 (210)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEES---CGGGC---C-
T ss_pred             HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEecCHHHHHHHHHHHHHcCCCceEEEEC---CcccC---C-
Confidence            34566788999999999874 7788888887 55 69999999988776654    35443222111   11110   0 


Q ss_pred             HHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEe
Q 048013          163 KAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~  198 (216)
                       .....||+|+....-......+.+.|+|+|++++.
T Consensus       139 -~~~~~~D~i~~~~~~~~~~~~~~~~L~pgG~lv~~  173 (210)
T 3lbf_A          139 -QARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLP  173 (210)
T ss_dssp             -GGGCCEEEEEESSBCSSCCTHHHHTEEEEEEEEEE
T ss_pred             -ccCCCccEEEEccchhhhhHHHHHhcccCcEEEEE
Confidence             12357999998766544456788999999988865

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.71  E-value=0.00039  Score=53.67  Aligned_cols=106  Identities=23%  Similarity=0.303  Sum_probs=65.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHH--HHHHHHcCCCEE-EeCCC-CcccHHHHHHHHHHHcCCCc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYR--LSVAKKLGADNI-VKVST-NLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~--~~~~~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~  169 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++++.  .+.+++.+.... +..+- +.+++.+.+.++.+.. .++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-g~i   80 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGAN-IVLNGFGDPAPALAEIARHGVKAVHHPADLSDVAQIEALFALAEREF-GGV   80 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEECSSCCHHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHH-SSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCchHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHc-CCC
Confidence            4678999996 89999999999999995 8888887651  222333343322 22221 2233344444443333 379


Q ss_pred             cEEEEcCCC----------HH---------------HHHHHHHHhhc--CCEEEEeccCC
Q 048013          170 DVSFDCAGF----------NK---------------TMSTALSATRA--GGKVCLVGMGH  202 (216)
Q Consensus       170 d~vi~~~g~----------~~---------------~~~~~~~~l~~--~G~~v~~g~~~  202 (216)
                      |++|+++|.          .+               ..+.+++.|..  .|+++.++...
T Consensus        81 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~  140 (255)
T 2q2v_A           81 DILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVH  140 (255)
T ss_dssp             SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGG
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCch
Confidence            999999883          11               23455666643  47999887543

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=97.70  E-value=0.00047  Score=53.84  Aligned_cols=104  Identities=21%  Similarity=0.302  Sum_probs=65.6

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           93 IGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        93 ~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      ...++++||+|+ |++|.++++.+...|++ |+++++++++..     +....+..+- +.++..+.+.++.+.. +++|
T Consensus        11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~iD   83 (269)
T 3vtz_A           11 EFTDKVAIVTGGSSGIGLAVVDALVRYGAK-VVSVSLDEKSDV-----NVSDHFKIDVTNEEEVKEAVEKTTKKY-GRID   83 (269)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCC--CT-----TSSEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCchhcc-----CceeEEEecCCCHHHHHHHHHHHHHHc-CCCC
Confidence            457899999996 89999999999999995 888888865431     1222222222 2233444444444333 3799


Q ss_pred             EEEEcCCCH----------H---------------HHHHHHHHhh--cCCEEEEeccCCC
Q 048013          171 VSFDCAGFN----------K---------------TMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       171 ~vi~~~g~~----------~---------------~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      ++|+++|..          +               ..+.+++.|.  ..|+++.++....
T Consensus        84 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~  143 (269)
T 3vtz_A           84 ILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQS  143 (269)
T ss_dssp             EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhh
Confidence            999999841          1               2244555553  3689998875443

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.70  E-value=0.00027  Score=54.55  Aligned_cols=103  Identities=17%  Similarity=0.151  Sum_probs=68.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh--HHHHHHHHcCCCEEEe-CCCCcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDD--YRLSVAKKLGADNIVK-VSTNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~--~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .|+++||+|+ +++|.++++.+...|++ |++++++.  +..+.+++.|...... .+-.++..   ++++.  ...++|
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga~-Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~---v~~~~--~~g~iD   81 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGAE-VVCAARRAPDETLDIIAKDGGNASALLIDFADPLA---AKDSF--TDAGFD   81 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTT---TTTSS--TTTCCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCCE-EEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHH---HHHHH--HhCCCC
Confidence            6899999986 89999999999999995 88888874  3455667777654322 21111111   12211  234799


Q ss_pred             EEEEcCCCH-------------------------HHHHHHHHHhh---cCCEEEEeccCCC
Q 048013          171 VSFDCAGFN-------------------------KTMSTALSATR---AGGKVCLVGMGHR  203 (216)
Q Consensus       171 ~vi~~~g~~-------------------------~~~~~~~~~l~---~~G~~v~~g~~~~  203 (216)
                      ++++++|..                         ...+.+++.|.   .+|+++.++....
T Consensus        82 iLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~  142 (247)
T 4hp8_A           82 ILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLS  142 (247)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGG
T ss_pred             EEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhh
Confidence            999999852                         13456666663   3589999986443

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=97.70  E-value=0.0009  Score=53.81  Aligned_cols=82  Identities=16%  Similarity=0.098  Sum_probs=53.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChHHHHHH-H----HcCCCE-EEeCC-CCcc-------------
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVD-VDDYRLSVA-K----KLGADN-IVKVS-TNLQ-------------  152 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~-~~~~~~~~~-~----~~g~~~-~~~~~-~~~~-------------  152 (216)
                      .++++||+|+ |++|.++++.+...|++ |++++ ++.++.+.+ +    +.+... .+..+ .+.+             
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~-Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~  123 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYA-VCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPV  123 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------CCB
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhcccccccccccc
Confidence            5688999986 89999999999999995 88888 888765543 2    234322 22222 1222             


Q ss_pred             ----cHHHHHHHHHHHcCCCccEEEEcCCC
Q 048013          153 ----DIAEEVEKIQKAMGTGIDVSFDCAGF  178 (216)
Q Consensus       153 ----~~~~~~~~~~~~~~~~~d~vi~~~g~  178 (216)
                          ++.+.+.++.+.. .++|++|+++|.
T Consensus       124 ~~~~~v~~~~~~~~~~~-g~iD~lVnnAG~  152 (328)
T 2qhx_A          124 TLFTRCAELVAACYTHW-GRCDVLVNNASS  152 (328)
T ss_dssp             CHHHHHHHHHHHHHHHH-SCCCEEEECCCC
T ss_pred             ccHHHHHHHHHHHHHhc-CCCCEEEECCCC
Confidence                3444444444333 379999999973

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.70  E-value=0.0008  Score=51.14  Aligned_cols=81  Identities=19%  Similarity=0.213  Sum_probs=52.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-H----HcCCCEE-EeCCC-CcccHHHHHHHHHHHcCC
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-K----KLGADNI-VKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~----~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      ++++||+|+ |++|..+++.+...|++ |+.++++.++.+.+ +    ..+.... +..+- +.++..+.+.++.+.. .
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-g   79 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYA-LALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERF-G   79 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHH-S
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhc-C
Confidence            578999996 89999999999999995 89999998776543 2    2344332 22222 2223333333333333 3


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|+++|.
T Consensus        80 ~id~li~~Ag~   90 (235)
T 3l77_A           80 DVDVVVANAGL   90 (235)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            79999999984

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.70  E-value=0.00037  Score=53.91  Aligned_cols=92  Identities=21%  Similarity=0.326  Sum_probs=57.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh-------------------HHHHHH----HHcCCC-EEEeCCCCc
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD-------------------YRLSVA----KKLGAD-NIVKVSTNL  151 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~-------------------~~~~~~----~~~g~~-~~~~~~~~~  151 (216)
                      +.+|+|+|+|++|..+++.+...|..+++++|.+.                   .|.+.+    +++... .+..+....
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~  110 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALL  110 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEeccC
Confidence            46899999999999999999999998899999886                   454433    333332 222221111


Q ss_pred             ccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCC
Q 048013          152 QDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGG  193 (216)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G  193 (216)
                       + .+.+.++.    .++|+||+++.+...-....+.+...|
T Consensus       111 -~-~~~~~~~~----~~~DvVi~~~d~~~~~~~l~~~~~~~~  146 (249)
T 1jw9_B          111 -D-DAELAALI----AEHDLVLDCTDNVAVRNQLNAGCFAAK  146 (249)
T ss_dssp             -C-HHHHHHHH----HTSSEEEECCSSHHHHHHHHHHHHHHT
T ss_pred             -C-HhHHHHHH----hCCCEEEEeCCCHHHHHHHHHHHHHcC
Confidence             1 11222221    269999999998554334444444434

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.69  E-value=0.00025  Score=55.05  Aligned_cols=83  Identities=14%  Similarity=0.156  Sum_probs=54.1

Q ss_pred             CCCCCEEEEEc-C--CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEEEeCCCC-cccHHHHHHHHHHH
Q 048013           93 IGPETNVLIMG-S--GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNIVKVSTN-LQDIAEEVEKIQKA  164 (216)
Q Consensus        93 ~~~~~~vlv~G-a--g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~~~~~~~-~~~~~~~~~~~~~~  164 (216)
                      ..+++++||+| +  +++|..+++.+...|++ |++++++++..+.+    ++.+....+..+-. .++..+.+.++.+.
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   89 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAE-LAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTH   89 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCC-EEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            45688999998 4  79999999999999995 88888775443333    33443333332222 23344445555433


Q ss_pred             cCCCccEEEEcCC
Q 048013          165 MGTGIDVSFDCAG  177 (216)
Q Consensus       165 ~~~~~d~vi~~~g  177 (216)
                      . .++|++|+++|
T Consensus        90 ~-g~id~lv~nAg  101 (271)
T 3ek2_A           90 W-DSLDGLVHSIG  101 (271)
T ss_dssp             C-SCEEEEEECCC
T ss_pred             c-CCCCEEEECCc
Confidence            3 47999999987

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.69  E-value=0.00022  Score=52.59  Aligned_cols=101  Identities=19%  Similarity=0.247  Sum_probs=62.9

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCC---------CeEEEEcCChHHHHHHHHcCCCEEE-eCCCCcccHHHHHHHH
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFGA---------PRIVIVDVDDYRLSVAKKLGADNIV-KVSTNLQDIAEEVEKI  161 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g~---------~~vv~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~  161 (216)
                      .++++++||.+|+|+ |..++.+++..+.         .+|+++|.++...     +.....+ .-+....+..+.+.+.
T Consensus        19 ~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~   92 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----LEGATFLCPADVTDPRTSQRILEV   92 (196)
T ss_dssp             CCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----CTTCEEECSCCTTSHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhccc-----CCCCeEEEeccCCCHHHHHHHHHh
Confidence            368899999999987 8888999998773         4699999987420     1111222 1111111122222221


Q ss_pred             HHHcCCCccEEEE-----cCCCH------------HHHHHHHHHhhcCCEEEEecc
Q 048013          162 QKAMGTGIDVSFD-----CAGFN------------KTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       162 ~~~~~~~~d~vi~-----~~g~~------------~~~~~~~~~l~~~G~~v~~g~  200 (216)
                        ..+..+|+|+.     +++..            ..++.+.+.|+|+|++++.-.
T Consensus        93 --~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           93 --LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             --SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             --cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence              12457999995     33331            456778899999999987644

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=97.69  E-value=0.001  Score=53.19  Aligned_cols=108  Identities=19%  Similarity=0.242  Sum_probs=67.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC------------hHHHHH----HHHcCCCEEE-eCCC-CcccH
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVD------------DYRLSV----AKKLGADNIV-KVST-NLQDI  154 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~------------~~~~~~----~~~~g~~~~~-~~~~-~~~~~  154 (216)
                      -.++++||+|+ |++|..+++.+...|++ |++++++            .++.+.    +++.+..... ..+- +.++.
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~~-Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v  122 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGAD-IVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASL  122 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCe-EEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence            46789999986 89999999999999995 8888765            343332    2334544322 2222 22334


Q ss_pred             HHHHHHHHHHcCCCccEEEEcCCCH----------H---------------HHHHHHHHhhc---CCEEEEeccCCC
Q 048013          155 AEEVEKIQKAMGTGIDVSFDCAGFN----------K---------------TMSTALSATRA---GGKVCLVGMGHR  203 (216)
Q Consensus       155 ~~~~~~~~~~~~~~~d~vi~~~g~~----------~---------------~~~~~~~~l~~---~G~~v~~g~~~~  203 (216)
                      .+.+.++.+.. +++|++|+++|..          +               ..+.+++.|..   +|+++.++....
T Consensus       123 ~~~~~~~~~~~-g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~  198 (317)
T 3oec_A          123 QAVVDEALAEF-GHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVG  198 (317)
T ss_dssp             HHHHHHHHHHH-SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGG
T ss_pred             HHHHHHHHHHc-CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHh
Confidence            44445444333 3799999999841          1               23445555532   578998875443

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=97.68  E-value=0.0009  Score=52.19  Aligned_cols=104  Identities=16%  Similarity=0.225  Sum_probs=65.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChHHHHHH----HHcCCCEE-EeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV-DDYRLSVA----KKLGADNI-VKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~-~~~~~~~~----~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ |++|.++++.+...|++ |+++++ +.++.+.+    ++.+.... +..|- +.++..+.+.++.+.. 
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~-  104 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGAK-VAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERW-  104 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc-
Confidence            5789999986 89999999999999995 777766 55544332    33444332 22222 2233444445544333 


Q ss_pred             CCccEEEEcCCCH----------H---------------HHHHHHHHh--hcCCEEEEecc
Q 048013          167 TGIDVSFDCAGFN----------K---------------TMSTALSAT--RAGGKVCLVGM  200 (216)
Q Consensus       167 ~~~d~vi~~~g~~----------~---------------~~~~~~~~l--~~~G~~v~~g~  200 (216)
                      +++|++|+++|..          +               ..+.+++.|  ...|+++.++.
T Consensus       105 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS  165 (269)
T 4dmm_A          105 GRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIAS  165 (269)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECc
Confidence            3799999998841          1               234455555  34689998875

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.68  E-value=0.00012  Score=56.86  Aligned_cols=126  Identities=19%  Similarity=0.268  Sum_probs=75.3

Q ss_pred             CceEECCCCCCchhhhcchhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH--
Q 048013           61 DLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK--  138 (216)
Q Consensus        61 ~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~--  138 (216)
                      ...+.+++.+.+..... +........++.. ++++++||.+|+|. |..++.+++ .|. +|+++|.++...+.+++  
T Consensus        88 ~~~~~l~p~~~fgtg~~-~tt~~~~~~l~~~-~~~~~~VLDiGcG~-G~l~~~la~-~g~-~v~gvDi~~~~v~~a~~n~  162 (254)
T 2nxc_A           88 EIPLVIEPGMAFGTGHH-ETTRLALKALARH-LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANA  162 (254)
T ss_dssp             SEEEECCCC-----CCS-HHHHHHHHHHHHH-CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHH
T ss_pred             ceEEEECCCccccCCCC-HHHHHHHHHHHHh-cCCCCEEEEecCCC-cHHHHHHHH-hCC-eEEEEECCHHHHHHHHHHH
Confidence            33456666554443321 1111223344333 67889999999876 777777666 577 69999999988776654  


Q ss_pred             --cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCC---HHHHHHHHHHhhcCCEEEEeccC
Q 048013          139 --LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       139 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                        .+.. +...   ..++.+.   +   ....+|+|+.+...   ...++.+.+.|+|+|++++.+..
T Consensus       163 ~~~~~~-v~~~---~~d~~~~---~---~~~~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~~~  220 (254)
T 2nxc_A          163 KRNGVR-PRFL---EGSLEAA---L---PFGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             HHTTCC-CEEE---ESCHHHH---G---GGCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHcCCc-EEEE---ECChhhc---C---cCCCCCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEEeec
Confidence              3443 1111   1233221   1   23579999976543   24567788899999999988753

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=97.68  E-value=0.00063  Score=52.92  Aligned_cols=100  Identities=15%  Similarity=0.190  Sum_probs=63.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCC-EEEeCCC-CcccHHHHHHHHHHHcCCCccE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGAD-NIVKVST-NLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++++++       +.. ..+..+- +.+++.+.+.++.+.. +++|+
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~-------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~-g~iD~   77 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGSK-VIDLSIHDPG-------EAKYDHIECDVTNPDQVKASIDHIFKEY-GSISV   77 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESSCCC-------SCSSEEEECCTTCHHHHHHHHHHHHHHH-SCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEecCccc-------CCceEEEEecCCCHHHHHHHHHHHHHHc-CCCCE
Confidence            4688999996 89999999999999995 8888887654       211 2222221 2233444444443333 36999


Q ss_pred             EEEcCCCH----------H---------------HHHHHHHHhhc--CCEEEEeccCCC
Q 048013          172 SFDCAGFN----------K---------------TMSTALSATRA--GGKVCLVGMGHR  203 (216)
Q Consensus       172 vi~~~g~~----------~---------------~~~~~~~~l~~--~G~~v~~g~~~~  203 (216)
                      +|+++|..          +               ..+.+++.|..  .|+++.++....
T Consensus        78 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~  136 (264)
T 2dtx_A           78 LVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQA  136 (264)
T ss_dssp             EEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGG
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchh
Confidence            99999831          1               13455556543  489999885433

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.67  E-value=0.00055  Score=52.56  Aligned_cols=105  Identities=19%  Similarity=0.297  Sum_probs=65.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChHHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV-DDYRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~-~~~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++ ++++.+.+    ++.+... .+..+- +.++..+.++++.+.. 
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-   80 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGAN-VVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVF-   80 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            4678999996 89999999999999995 888877 76665432    2234332 222222 2233344444443333 


Q ss_pred             CCccEEEEcCCCH----------H---------------HHHHHHHHhh--cCCEEEEeccC
Q 048013          167 TGIDVSFDCAGFN----------K---------------TMSTALSATR--AGGKVCLVGMG  201 (216)
Q Consensus       167 ~~~d~vi~~~g~~----------~---------------~~~~~~~~l~--~~G~~v~~g~~  201 (216)
                      .++|++|+++|..          +               ..+.+++.|.  ..|+++.++..
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~  142 (246)
T 2uvd_A           81 GQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASV  142 (246)
T ss_dssp             SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCT
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCH
Confidence            3799999999831          1               1344555553  35899988753

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.67  E-value=0.00067  Score=53.52  Aligned_cols=108  Identities=19%  Similarity=0.262  Sum_probs=67.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCC--eEEEEcCChHHHHHHH-Hc-----CCCE-EEeCC-CCcccHHHHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAP--RIVIVDVDDYRLSVAK-KL-----GADN-IVKVS-TNLQDIAEEVEKIQK  163 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~--~vv~~~~~~~~~~~~~-~~-----g~~~-~~~~~-~~~~~~~~~~~~~~~  163 (216)
                      .++++||+|+ |++|.++++.+...|+.  +|+.++++.++.+.+. ++     +... .+..| .+.++..+.++++.+
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            4689999996 89999998877777762  5888999988766542 22     2221 12222 223344444444322


Q ss_pred             HcCCCccEEEEcCCCH-----------H---------------HHHHHHHHh--hcCCEEEEeccCCC
Q 048013          164 AMGTGIDVSFDCAGFN-----------K---------------TMSTALSAT--RAGGKVCLVGMGHR  203 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~~-----------~---------------~~~~~~~~l--~~~G~~v~~g~~~~  203 (216)
                      . -+++|++|+++|..           +               ..+.+++.|  +..|+++.++....
T Consensus       112 ~-~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~  178 (287)
T 3rku_A          112 E-FKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAG  178 (287)
T ss_dssp             G-GCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGG
T ss_pred             h-cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhh
Confidence            2 24799999999831           1               234555555  34689999886444

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=97.67  E-value=0.0014  Score=51.18  Aligned_cols=107  Identities=18%  Similarity=0.242  Sum_probs=67.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHH-------H----HHHHHcCCCEE-EeCCC-CcccHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYR-------L----SVAKKLGADNI-VKVST-NLQDIAEEVEK  160 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~-------~----~~~~~~g~~~~-~~~~~-~~~~~~~~~~~  160 (216)
                      .++++||+|+ +++|.++++.+...|++ |++++++.++       .    +.++..+.... +..+- +.++..+.+.+
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   83 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGAN-VAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAA   83 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence            5789999996 89999999999999994 8888887542       1    12233344322 22222 22333444445


Q ss_pred             HHHHcCCCccEEEEcCCCH----------H---------------HHHHHHHHhh--cCCEEEEeccCCC
Q 048013          161 IQKAMGTGIDVSFDCAGFN----------K---------------TMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~----------~---------------~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      +.+.. .++|++++++|..          +               ..+.+++.|.  .+|+++.++....
T Consensus        84 ~~~~~-g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~  152 (274)
T 3e03_A           84 TVDTF-GGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPS  152 (274)
T ss_dssp             HHHHH-SCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCC
T ss_pred             HHHHc-CCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHh
Confidence            44333 3799999999841          1               2355566664  3589998886544

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=97.66  E-value=0.0013  Score=50.25  Aligned_cols=82  Identities=20%  Similarity=0.203  Sum_probs=52.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCC------eEEEEcCChHHHHHHH-Hc---CCCE-EEeCCCC-cccHHHHHHHHH
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAP------RIVIVDVDDYRLSVAK-KL---GADN-IVKVSTN-LQDIAEEVEKIQ  162 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~------~vv~~~~~~~~~~~~~-~~---g~~~-~~~~~~~-~~~~~~~~~~~~  162 (216)
                      ++++||+|+ |++|..+++.+...|+.      +|++++++.++.+.+. ++   +... .+..+-. .+.+.+.++++.
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   81 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV   81 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence            567999996 99999999988888983      4888999887765442 22   3221 2222222 223334444443


Q ss_pred             HHcCCCccEEEEcCCC
Q 048013          163 KAMGTGIDVSFDCAGF  178 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~  178 (216)
                      +. ..++|++|.++|.
T Consensus        82 ~~-~g~id~li~~Ag~   96 (244)
T 2bd0_A           82 ER-YGHIDCLVNNAGV   96 (244)
T ss_dssp             HH-TSCCSEEEECCCC
T ss_pred             Hh-CCCCCEEEEcCCc
Confidence            33 3479999999873

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.66  E-value=0.0004  Score=53.50  Aligned_cols=103  Identities=21%  Similarity=0.245  Sum_probs=73.1

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHHH----cCCCE-EEeCCCCcccHHHHHHH
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAKK----LGADN-IVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~~~~  160 (216)
                      .+....++++++||.+|+|. |..++.+++..+ ..+++++|.+++..+.+++    .+... +.....   |+.+.   
T Consensus        85 i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~---  157 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLK---DIYEG---  157 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECS---CGGGC---
T ss_pred             HHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEEC---chhhc---
Confidence            34567788999999999876 888888888853 3369999999988777654    35443 222111   22111   


Q ss_pred             HHHHcCCCccEEEEcCCCH-HHHHHHHHHhhcCCEEEEec
Q 048013          161 IQKAMGTGIDVSFDCAGFN-KTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~-~~~~~~~~~l~~~G~~v~~g  199 (216)
                         .....+|+|+.....+ ..++.+.+.|+|+|+++++.
T Consensus       158 ---~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          158 ---IEEENVDHVILDLPQPERVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             ---CCCCSEEEEEECSSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             ---cCCCCcCEEEECCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence               1234699999888764 47789999999999999875

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.65  E-value=0.00029  Score=57.57  Aligned_cols=106  Identities=15%  Similarity=0.134  Sum_probs=71.7

Q ss_pred             HHHHHHHcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC----hHH---------HHHHHHcCCCEEEeCCC
Q 048013           84 GVHACRRAN-IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD----DYR---------LSVAKKLGADNIVKVST  149 (216)
Q Consensus        84 a~~~l~~~~-~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~----~~~---------~~~~~~~g~~~~~~~~~  149 (216)
                      -+.+++..+ --++.+|+|+|+|..|..+++++..+|.++|+++|++    .++         .+++++....      .
T Consensus       179 l~~A~~i~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~------~  252 (388)
T 1vl6_A          179 FLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPE------R  252 (388)
T ss_dssp             HHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTT------C
T ss_pred             HHHHHHHhCCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhcc------C
Confidence            345555544 3467899999999999999999999999889999998    443         3334432211      1


Q ss_pred             CcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          150 NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      ...+..+.+        .+.|++|.+++..-..+..++.|+++-.++.++.+.+
T Consensus       253 ~~~~L~eav--------~~ADVlIG~Sap~l~t~emVk~Ma~~pIIfalSNPt~  298 (388)
T 1vl6_A          253 LSGDLETAL--------EGADFFIGVSRGNILKPEWIKKMSRKPVIFALANPVP  298 (388)
T ss_dssp             CCSCHHHHH--------TTCSEEEECSCSSCSCHHHHTTSCSSCEEEECCSSSC
T ss_pred             chhhHHHHH--------ccCCEEEEeCCCCccCHHHHHhcCCCCEEEEcCCCCC
Confidence            122333222        2479999998853444778888988777777766553

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.65  E-value=0.00013  Score=55.81  Aligned_cols=105  Identities=14%  Similarity=0.135  Sum_probs=69.5

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChHHHHHHHHcCC--CEEEeCCCCcccHHHHHHHHHHH
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFGAP-RIVIVDVDDYRLSVAKKLGA--DNIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~-~vv~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      ++...++||++||-+|+|+ |..+..+++.-|.. +|+++|.+++..+.+++.-.  .++..+..+..+...    . ..
T Consensus        70 l~~l~ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~----~-~~  143 (233)
T 4df3_A           70 LIELPVKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEK----Y-RH  143 (233)
T ss_dssp             CSCCCCCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGG----G-TT
T ss_pred             hhhcCCCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccc----c-cc
Confidence            4556799999999999875 78888899887754 79999999998877754321  222222111111110    0 01


Q ss_pred             cCCCccEEEEcCCCH----HHHHHHHHHhhcCCEEEEe
Q 048013          165 MGTGIDVSFDCAGFN----KTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       165 ~~~~~d~vi~~~g~~----~~~~~~~~~l~~~G~~v~~  198 (216)
                      ....+|+||....-+    ..+..+.+.|+|+|++++.
T Consensus       144 ~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          144 LVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             TCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence            234689988766542    3456778899999998864

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=97.65  E-value=0.0017  Score=51.12  Aligned_cols=82  Identities=16%  Similarity=0.098  Sum_probs=53.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChHHHHHH-H----HcCCCE-EEeCC-CCcc-------------
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVD-VDDYRLSVA-K----KLGADN-IVKVS-TNLQ-------------  152 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~-~~~~~~~~~-~----~~g~~~-~~~~~-~~~~-------------  152 (216)
                      .++++||+|+ |++|.++++.+...|++ |++++ ++.++.+.+ +    +.+... .+..+ .+.+             
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGYA-VCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPV   86 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCB
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCccccccccccccccc
Confidence            4688999986 89999999999999995 88888 888765543 2    234332 22222 1223             


Q ss_pred             ----cHHHHHHHHHHHcCCCccEEEEcCCC
Q 048013          153 ----DIAEEVEKIQKAMGTGIDVSFDCAGF  178 (216)
Q Consensus       153 ----~~~~~~~~~~~~~~~~~d~vi~~~g~  178 (216)
                          +..+.+.++.+.. +++|++|+++|.
T Consensus        87 ~~~~~v~~~~~~~~~~~-g~iD~lvnnAg~  115 (291)
T 1e7w_A           87 TLFTRCAELVAACYTHW-GRCDVLVNNASS  115 (291)
T ss_dssp             CHHHHHHHHHHHHHHHH-SCCCEEEECCCC
T ss_pred             chHHHHHHHHHHHHHhc-CCCCEEEECCCC
Confidence                4444445444333 379999999973

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=97.65  E-value=0.00011  Score=57.41  Aligned_cols=103  Identities=19%  Similarity=0.200  Sum_probs=64.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      -.++++||+|+ |++|.++++.+...|++ |++++++.++.+....+    ..++ .+.....+.+.++.+.. .++|++
T Consensus        26 l~gk~vlVTGas~gIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~----~~Dv-~~~~~~~~~~~~~~~~~-g~iD~l   98 (266)
T 3uxy_A           26 FEGKVALVTGAAGGIGGAVVTALRAAGAR-VAVADRAVAGIAADLHL----PGDL-REAAYADGLPGAVAAGL-GRLDIV   98 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEECSSCCTTSCCSEEC----CCCT-TSHHHHHHHHHHHHHHH-SCCCEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHhhhcc----CcCC-CCHHHHHHHHHHHHHhc-CCCCEE
Confidence            35789999996 89999999999999995 88888876543221111    0111 11222333334443333 379999


Q ss_pred             EEcCCCH----------H---------------HHHHHHHHhhc--CCEEEEeccCCC
Q 048013          173 FDCAGFN----------K---------------TMSTALSATRA--GGKVCLVGMGHR  203 (216)
Q Consensus       173 i~~~g~~----------~---------------~~~~~~~~l~~--~G~~v~~g~~~~  203 (216)
                      ++++|..          +               ..+.+++.|+.  .|+++.++....
T Consensus        99 vnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~  156 (266)
T 3uxy_A           99 VNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWG  156 (266)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBT
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHh
Confidence            9999841          1               23455555543  689999886444

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=97.65  E-value=0.00055  Score=53.50  Aligned_cols=81  Identities=12%  Similarity=0.214  Sum_probs=51.7

Q ss_pred             CCCEEEEEc-C--CHHHHHHHHHHHHcCCCeEEEEcCChH---HHHHH-HHcCCCEEEeCCCC-cccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMG-S--GPIGLVTMLAARAFGAPRIVIVDVDDY---RLSVA-KKLGADNIVKVSTN-LQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~G-a--g~~G~~~i~~a~~~g~~~vv~~~~~~~---~~~~~-~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+| +  |++|..+++.+...|++ |++++++++   ..+.+ ++.+....+..+-. .++..+.+.++.+.. 
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-   82 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGAT-LAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL-   82 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCE-EEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT-
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            468899998 4  79999999999989995 888888764   33333 22342222322222 233344444443333 


Q ss_pred             CCccEEEEcCC
Q 048013          167 TGIDVSFDCAG  177 (216)
Q Consensus       167 ~~~d~vi~~~g  177 (216)
                      +++|++|+++|
T Consensus        83 g~id~lv~nAg   93 (275)
T 2pd4_A           83 GSLDFIVHSVA   93 (275)
T ss_dssp             SCEEEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            47999999987

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=97.64  E-value=0.00072  Score=52.37  Aligned_cols=104  Identities=20%  Similarity=0.269  Sum_probs=64.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChHHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIV-DVDDYRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~-~~~~~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ +++|.++++.+...|++ |+++ ++++++.+..    ++.+... .+..|- +.++..+.++++.+.. 
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-   84 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGAN-VVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKF-   84 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh-
Confidence            5789999996 89999999999999996 6666 6665544332    3334332 222222 2233444445544333 


Q ss_pred             CCccEEEEcCCCH-----------H---------------HHHHHHHHhhcCCEEEEecc
Q 048013          167 TGIDVSFDCAGFN-----------K---------------TMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       167 ~~~d~vi~~~g~~-----------~---------------~~~~~~~~l~~~G~~v~~g~  200 (216)
                      +++|++++++|..           +               ..+.+++.+..+|+++.++.
T Consensus        85 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS  144 (259)
T 3edm_A           85 GEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSS  144 (259)
T ss_dssp             CSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence            3799999998731           1               22344445556789998875

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=97.64  E-value=9e-05  Score=56.84  Aligned_cols=103  Identities=25%  Similarity=0.337  Sum_probs=63.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCC-cccHHHHHHHHHHHcC-CCcc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTN-LQDIAEEVEKIQKAMG-TGID  170 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~d  170 (216)
                      ..++++||+|+ |++|..+++.+...|++ |+++++++++.+     +....+..+-. .++..+.+.++.+..+ .++|
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD   78 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWW-VASIDVVENEEA-----SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVD   78 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSCCTTS-----SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCE-EEEEeCChhhcc-----CCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            45789999996 89999999999999985 888888865432     11111111111 1223333444433332 4799


Q ss_pred             EEEEcCCC--------H---H---------------HHHHHHHHhhcCCEEEEeccCC
Q 048013          171 VSFDCAGF--------N---K---------------TMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       171 ~vi~~~g~--------~---~---------------~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      ++|+++|.        .   +               ..+.+++.|+.+|+++.++...
T Consensus        79 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~  136 (241)
T 1dhr_A           79 AILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKA  136 (241)
T ss_dssp             EEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             EEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHH
Confidence            99999882        0   0               1234455555678999887543

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=97.64  E-value=0.00039  Score=54.33  Aligned_cols=107  Identities=20%  Similarity=0.170  Sum_probs=65.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|..++..+...|++ |++++++.++.+.+    ++.+... .+..+- +.+++.+.+.++.+.. .
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-g  110 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGAD-VAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDF-G  110 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTCE-EEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHh-C
Confidence            4688999986 89999999988888995 88888876544332    2334332 222222 2223334444443333 3


Q ss_pred             CccEEEEcCCCHH---------------------------HHHHHHHHhh--cCCEEEEeccCCC
Q 048013          168 GIDVSFDCAGFNK---------------------------TMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       168 ~~d~vi~~~g~~~---------------------------~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      ++|++|.++|...                           ..+.+++.+.  ..|+++.++....
T Consensus       111 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~  175 (279)
T 3ctm_A          111 TIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISG  175 (279)
T ss_dssp             CCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTT
T ss_pred             CCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHh
Confidence            6999999987210                           0245555553  3589999886543

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.64  E-value=0.00035  Score=53.84  Aligned_cols=74  Identities=22%  Similarity=0.221  Sum_probs=49.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      ..++++||+|+ |++|..+++.+...|++ |++++++++.   +++++....+ .+- .++..+.+.+    .. ++|++
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~---~~~~~~~~~~-~D~-~~~~~~~~~~----~~-~iD~l   85 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGAE-VTICARNEEL---LKRSGHRYVV-CDL-RKDLDLLFEK----VK-EVDIL   85 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHH---HHHTCSEEEE-CCT-TTCHHHHHHH----SC-CCSEE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCCHHH---HHhhCCeEEE-eeH-HHHHHHHHHH----hc-CCCEE
Confidence            46789999996 89999999999999995 8999998744   3344422222 221 2233333332    22 79999


Q ss_pred             EEcCCC
Q 048013          173 FDCAGF  178 (216)
Q Consensus       173 i~~~g~  178 (216)
                      |+++|.
T Consensus        86 v~~Ag~   91 (249)
T 1o5i_A           86 VLNAGG   91 (249)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999983

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.63  E-value=0.00058  Score=52.42  Aligned_cols=82  Identities=17%  Similarity=0.273  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCCC-cccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVSTN-LQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~~-~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++++++.+.+    ++.+... .+..+-. .+++.+.++++.+.. .
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~   87 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL-G   87 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhc-C
Confidence            4688999996 99999999999989985 89999988765433    2234332 2222222 223333344433222 3


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.++|.
T Consensus        88 ~~d~vi~~Ag~   98 (255)
T 1fmc_A           88 KVDILVNNAGG   98 (255)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999873

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=97.62  E-value=0.0011  Score=50.97  Aligned_cols=104  Identities=14%  Similarity=0.268  Sum_probs=64.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChHHHHH----HHHcCCCEE-EeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV-DDYRLSV----AKKLGADNI-VKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~-~~~~~~~----~~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ |++|.++++.+...|++ |+++++ +.++.+.    +++.+.... +..+- +.++..+.+.++.+.. 
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-   80 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYN-VAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQF-   80 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc-
Confidence            4678999986 89999999999999995 666655 4444433    233444432 22222 2233444445544333 


Q ss_pred             CCccEEEEcCCCH----------H---------------HHHHHHHHh--hcCCEEEEecc
Q 048013          167 TGIDVSFDCAGFN----------K---------------TMSTALSAT--RAGGKVCLVGM  200 (216)
Q Consensus       167 ~~~d~vi~~~g~~----------~---------------~~~~~~~~l--~~~G~~v~~g~  200 (216)
                      .++|++++++|..          +               ..+.+++.|  +..|+++.++.
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS  141 (246)
T 3osu_A           81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSS  141 (246)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            3799999999841          1               234555555  34689998875

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=97.62  E-value=0.00018  Score=56.41  Aligned_cols=80  Identities=15%  Similarity=0.204  Sum_probs=50.5

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCC--C-EEEeCCCCc-ccHHHHHHHHHHHcCCCcc
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGA--D-NIVKVSTNL-QDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~--~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~d  170 (216)
                      +++||+|+ |++|..+++.+...|++ |+++++++++.+.+ +++..  . ..+..|-.+ ++..+.+.++.+. -.++|
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~-~g~iD   99 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWS-LVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEE-FATLR   99 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGG-GSSCC
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHH-hCCCC
Confidence            78999996 89999999999999995 89999998776654 33432  1 122222111 2222222222111 24689


Q ss_pred             EEEEcCCC
Q 048013          171 VSFDCAGF  178 (216)
Q Consensus       171 ~vi~~~g~  178 (216)
                      ++|+++|.
T Consensus       100 ~lvnnAG~  107 (272)
T 2nwq_A          100 GLINNAGL  107 (272)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999873

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=97.62  E-value=0.0013  Score=50.88  Aligned_cols=81  Identities=17%  Similarity=0.265  Sum_probs=51.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHH--HHHH-HHc---CCCE-EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYR--LSVA-KKL---GADN-IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~--~~~~-~~~---g~~~-~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      ++++||+|+ |++|..+++.+...|++ |++++++.++  .+.+ +++   +... .+..|- +.++..+.+.++.+.. 
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-   79 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFD-IAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKL-   79 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh-
Confidence            578999996 89999999998889995 8888888766  4332 222   4332 222222 2233344444443333 


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      +++|++|+++|.
T Consensus        80 g~iD~lv~nAg~   91 (258)
T 3a28_C           80 GGFDVLVNNAGI   91 (258)
T ss_dssp             TCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999883

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=97.61  E-value=0.0005  Score=54.40  Aligned_cols=102  Identities=13%  Similarity=0.157  Sum_probs=71.8

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCC-EEEeCCCCcccHHHHHHHHH
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGAD-NIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~  162 (216)
                      ++...++++++||.+|+|. |..+..+++..|. +|+++|.+++..+.+++    .+.. .+....   .++.    ++ 
T Consensus        65 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~~----~~-  134 (302)
T 3hem_A           65 LDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI---QGWE----EF-  134 (302)
T ss_dssp             HHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEE---CCGG----GC-
T ss_pred             HHHcCCCCcCEEEEeeccC-cHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE---CCHH----Hc-
Confidence            3556788999999999985 8888889998887 59999999988776654    3443 221111   1221    11 


Q ss_pred             HHcCCCccEEEEcCC-----C----------HHHHHHHHHHhhcCCEEEEeccCC
Q 048013          163 KAMGTGIDVSFDCAG-----F----------NKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g-----~----------~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                         ...+|+|+..-.     +          ...++.+.+.|+|+|++++.....
T Consensus       135 ---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  186 (302)
T 3hem_A          135 ---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI  186 (302)
T ss_dssp             ---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred             ---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence               457999987432     1          256788999999999999876543

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=97.61  E-value=0.0006  Score=52.87  Aligned_cols=82  Identities=15%  Similarity=0.298  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCChH---HHHHH-HHcCCCEEEeCCCC-cccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS---GPIGLVTMLAARAFGAPRIVIVDVDDY---RLSVA-KKLGADNIVKVSTN-LQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga---g~~G~~~i~~a~~~g~~~vv~~~~~~~---~~~~~-~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+   |++|..+++.+...|++ |++++++++   ..+.+ ++.+....+..+-. .++..+.++++.+.. 
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-   84 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAE-VALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAF-   84 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTCE-EEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHc-
Confidence            4688999984   69999999988888995 888888875   33333 22343333332222 223334444443333 


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      .++|++|+++|.
T Consensus        85 g~iD~lv~~Ag~   96 (261)
T 2wyu_A           85 GGLDYLVHAIAF   96 (261)
T ss_dssp             SSEEEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999873

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=97.61  E-value=0.00097  Score=56.14  Aligned_cols=82  Identities=23%  Similarity=0.347  Sum_probs=54.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHH--H-HHHHHcCCCEEEeCC-CCcccHHHHHHHHHHHcCCCc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYR--L-SVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~--~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      +++++||+|+ |++|..+++.+...|++ |+.++++...  . +..++.+...+ ..+ .+.++..+.+.++.+..+.++
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga~-Vvl~~r~~~~~~l~~~~~~~~~~~~-~~Dvtd~~~v~~~~~~~~~~~g~~i  289 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGAT-VVAIDVDGAAEDLKRVADKVGGTAL-TLDVTADDAVDKITAHVTEHHGGKV  289 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEECGGGHHHHHHHHHHHTCEEE-ECCTTSTTHHHHHHHHHHHHSTTCC
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCCE-EEEEeCCccHHHHHHHHHHcCCeEE-EEecCCHHHHHHHHHHHHHHcCCCc
Confidence            5678999985 99999999998889995 8888776432  2 23345565432 222 233344455555554445459


Q ss_pred             cEEEEcCCC
Q 048013          170 DVSFDCAGF  178 (216)
Q Consensus       170 d~vi~~~g~  178 (216)
                      |++|+++|.
T Consensus       290 d~lV~nAGv  298 (454)
T 3u0b_A          290 DILVNNAGI  298 (454)
T ss_dssp             SEEEECCCC
T ss_pred             eEEEECCcc
Confidence            999999985

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=97.61  E-value=0.00057  Score=52.82  Aligned_cols=79  Identities=19%  Similarity=0.342  Sum_probs=49.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEE-EeCCC-CcccHHHHHHHHHHHcCCCccE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNI-VKVST-NLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      .++++||+|+ +++|.++++.+...|++ |++++++.++  ..++++.... +..+- +.++..+.+..+.+  ..++|+
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~--~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~g~id~   82 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGAQ-VVVLDIRGED--VVADLGDRARFAAADVTDEAAVASALDLAET--MGTLRI   82 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEESSCHH--HHHHTCTTEEEEECCTTCHHHHHHHHHHHHH--HSCEEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCchHH--HHHhcCCceEEEECCCCCHHHHHHHHHHHHH--hCCCCE
Confidence            4688999996 89999999999899995 8888875443  3344554432 22222 22233333333332  347999


Q ss_pred             EEEcCCC
Q 048013          172 SFDCAGF  178 (216)
Q Consensus       172 vi~~~g~  178 (216)
                      +++++|.
T Consensus        83 lv~nAg~   89 (257)
T 3tl3_A           83 VVNCAGT   89 (257)
T ss_dssp             EEECGGG
T ss_pred             EEECCCC
Confidence            9999983

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.60  E-value=0.00029  Score=55.22  Aligned_cols=81  Identities=26%  Similarity=0.316  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc---CC---C-EEEeCCC-CcccHHHHHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL---GA---D-NIVKVST-NLQDIAEEVEKIQKA  164 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~---g~---~-~~~~~~~-~~~~~~~~~~~~~~~  164 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+ +++   +.   . ..+..+- +.++..+.+.++.+.
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGAN-VTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            5688999986 89999999999999995 89999998776543 222   32   2 1222222 223334444444333


Q ss_pred             cCCCccEEEEcCC
Q 048013          165 MGTGIDVSFDCAG  177 (216)
Q Consensus       165 ~~~~~d~vi~~~g  177 (216)
                      . +++|++|+++|
T Consensus        84 ~-g~iD~lv~nAg   95 (280)
T 1xkq_A           84 F-GKIDVLVNNAG   95 (280)
T ss_dssp             H-SCCCEEEECCC
T ss_pred             c-CCCCEEEECCC
Confidence            3 37999999987

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=97.60  E-value=0.00083  Score=51.93  Aligned_cols=101  Identities=20%  Similarity=0.205  Sum_probs=63.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCC-CcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .++++||+|+ |++|.++++.+...|++ |++++++.++.+.      ...+..+- +.++..+.++++.+. ..++|++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~------~~~~~~Dl~d~~~v~~~~~~~~~~-~g~iD~l   91 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGDK-VAITYRSGEPPEG------FLAVKCDITDTEQVEQAYKEIEET-HGPVEVL   91 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSSCCCTT------SEEEECCTTSHHHHHHHHHHHHHH-TCSCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChHhhcc------ceEEEecCCCHHHHHHHHHHHHHH-cCCCCEE
Confidence            4688999996 89999999999999995 8888887654321      12222222 223344444444333 3479999


Q ss_pred             EEcCCCH-------------------------HHHHHHHHHhh--cCCEEEEeccCCC
Q 048013          173 FDCAGFN-------------------------KTMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       173 i~~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      |+++|..                         ...+.+++.|.  ..|+++.++....
T Consensus        92 v~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~  149 (253)
T 2nm0_A           92 IANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVG  149 (253)
T ss_dssp             EEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCC
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhh
Confidence            9998741                         12244444553  4589999886544

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=97.60  E-value=0.00042  Score=54.00  Aligned_cols=82  Identities=21%  Similarity=0.372  Sum_probs=52.7

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCChHH-HHHH-HHcCCC-EEEeCCC-CcccHHHHHHHHHHHcC-
Q 048013           95 PETNVLIMGS---GPIGLVTMLAARAFGAPRIVIVDVDDYR-LSVA-KKLGAD-NIVKVST-NLQDIAEEVEKIQKAMG-  166 (216)
Q Consensus        95 ~~~~vlv~Ga---g~~G~~~i~~a~~~g~~~vv~~~~~~~~-~~~~-~~~g~~-~~~~~~~-~~~~~~~~~~~~~~~~~-  166 (216)
                      .++++||+|+   |++|.++++.+...|++ |++++++.++ .+.+ ++++.. ..+..+- +.++..+.+.++.+..+ 
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   84 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGAQ-LVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGA   84 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCE-EEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCCE-EEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5688999984   79999999999999995 8888888755 2333 344432 1222222 22334444444443333 


Q ss_pred             -CCccEEEEcCC
Q 048013          167 -TGIDVSFDCAG  177 (216)
Q Consensus       167 -~~~d~vi~~~g  177 (216)
                       .++|++|+++|
T Consensus        85 ~~~iD~lv~nAg   96 (269)
T 2h7i_A           85 GNKLDGVVHSIG   96 (269)
T ss_dssp             TCCEEEEEECCC
T ss_pred             CCCceEEEECCc
Confidence             27999999987

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.59  E-value=0.00052  Score=54.69  Aligned_cols=99  Identities=13%  Similarity=0.236  Sum_probs=69.6

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc----CCCE-EEeCCCCcccHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL----GADN-IVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~----g~~~-~~~~~~~~~~~~~~~~~~~~  163 (216)
                      +...++++++||.+|+|. |..+..+++..|+ .|+++|.+++..+.+++.    +... +....   .++    .+   
T Consensus        84 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~----~~---  151 (318)
T 2fk8_A           84 DKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLL---QGW----ED---  151 (318)
T ss_dssp             TTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE---SCG----GG---
T ss_pred             HhcCCCCcCEEEEEcccc-hHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE---CCh----HH---
Confidence            446678999999999876 7788888887788 599999999888777553    4321 21111   121    11   


Q ss_pred             HcCCCccEEEEc-----CCC---HHHHHHHHHHhhcCCEEEEecc
Q 048013          164 AMGTGIDVSFDC-----AGF---NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       164 ~~~~~~d~vi~~-----~g~---~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                       ....+|+|+..     ++.   ...++.+.+.|+|+|++++.-.
T Consensus       152 -~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  195 (318)
T 2fk8_A          152 -FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS  195 (318)
T ss_dssp             -CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             -CCCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence             12579999976     432   3567888999999999987654

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.59  E-value=0.00016  Score=54.15  Aligned_cols=104  Identities=21%  Similarity=0.270  Sum_probs=70.6

Q ss_pred             HHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHH
Q 048013           86 HACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        86 ~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~  160 (216)
                      ..++...++++++||.+|+|. |..+..+++..|. .++++++.+++..+.+++    .+...+.....   +....   
T Consensus        68 ~~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~---d~~~~---  140 (215)
T 2yxe_A           68 MMCELLDLKPGMKVLEIGTGC-GYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVG---DGTLG---  140 (215)
T ss_dssp             HHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEES---CGGGC---
T ss_pred             HHHHhhCCCCCCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC---CcccC---
Confidence            344556788999999999884 8888888888762 269999999988776654    34433221111   11110   


Q ss_pred             HHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEe
Q 048013          161 IQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~  198 (216)
                      +  .....+|+|+....-....+.+.+.|+|+|++++.
T Consensus       141 ~--~~~~~fD~v~~~~~~~~~~~~~~~~L~pgG~lv~~  176 (215)
T 2yxe_A          141 Y--EPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMP  176 (215)
T ss_dssp             C--GGGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             C--CCCCCeeEEEECCchHHHHHHHHHHcCCCcEEEEE
Confidence            1  11347999998877544557888999999998865

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.59  E-value=0.002  Score=49.07  Aligned_cols=78  Identities=24%  Similarity=0.169  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-HcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      +++++||+|+ |++|..+++.+...|++ |++++++.++.+.+. +......+..+-.  + .+.++++.+ ...++|++
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~D~~--~-~~~~~~~~~-~~~~id~v   80 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGAK-VVAVTRTNSDLVSLAKECPGIEPVCVDLG--D-WDATEKALG-GIGPVDLL   80 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHSTTCEEEECCTT--C-HHHHHHHHT-TCCCCSEE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHhccCCCcEEecCC--C-HHHHHHHHH-HcCCCCEE
Confidence            5688999996 99999999999999995 899999987765443 3322233332222  2 123333332 22468999


Q ss_pred             EEcCC
Q 048013          173 FDCAG  177 (216)
Q Consensus       173 i~~~g  177 (216)
                      |+++|
T Consensus        81 i~~Ag   85 (244)
T 1cyd_A           81 VNNAA   85 (244)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            99998

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.59  E-value=0.0026  Score=43.92  Aligned_cols=94  Identities=19%  Similarity=0.180  Sum_probs=59.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      +.+|+|+|+|.+|...++.+...|.+ |+++++++++.+.+.+ ++...+ ..+..  +. +.+.+   ..-.++|++|.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~-v~~~d~~~~~~~~~~~~~~~~~~-~~d~~--~~-~~l~~---~~~~~~d~vi~   75 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHD-IVLIDIDKDICKKASAEIDALVI-NGDCT--KI-KTLED---AGIEDADMYIA   75 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHCSSEEE-ESCTT--SH-HHHHH---TTTTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCe-EEEEECCHHHHHHHHHhcCcEEE-EcCCC--CH-HHHHH---cCcccCCEEEE
Confidence            35799999999999999999888984 8999999888776653 565432 21111  11 11221   12347999999


Q ss_pred             cCCCHHHHH---HHHHHhhcCCEEEEe
Q 048013          175 CAGFNKTMS---TALSATRAGGKVCLV  198 (216)
Q Consensus       175 ~~g~~~~~~---~~~~~l~~~G~~v~~  198 (216)
                      +++......   ...+.+.+ ++++..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~-~~ii~~  101 (140)
T 1lss_A           76 VTGKEEVNLMSSLLAKSYGI-NKTIAR  101 (140)
T ss_dssp             CCSCHHHHHHHHHHHHHTTC-CCEEEE
T ss_pred             eeCCchHHHHHHHHHHHcCC-CEEEEE
Confidence            999854322   23333444 355543

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=97.59  E-value=0.00075  Score=51.98  Aligned_cols=105  Identities=18%  Similarity=0.230  Sum_probs=64.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCE-EEeCCCCc-ccHHHHHHHHHHHcCCCccEE
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADN-IVKVSTNL-QDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      +++||+|+ |++|.++++.+...|++ |++++++.++.+.+ ++++... .+..|-.+ ++..+.+.++.+ ...++|++
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-~~g~iD~l   78 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHK-VIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPA-EWCNIDIL   78 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCT-TTCCCCEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHH-hCCCCCEE
Confidence            36888886 89999999999999995 88999998776654 4454332 22222221 222222222211 12479999


Q ss_pred             EEcCCCH-----------H---------------HHHHHHHHhh--cCCEEEEeccCCC
Q 048013          173 FDCAGFN-----------K---------------TMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       173 i~~~g~~-----------~---------------~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      |+++|..           +               ..+.+++.|.  ..|+++.++....
T Consensus        79 vnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~  137 (248)
T 3asu_A           79 VNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAG  137 (248)
T ss_dssp             EECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGG
T ss_pred             EECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchh
Confidence            9998731           1               1344555553  3589999885443

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=97.58  E-value=0.0015  Score=51.33  Aligned_cols=81  Identities=19%  Similarity=0.203  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCChH---HHHHH-HHcCCCEEEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS---GPIGLVTMLAARAFGAPRIVIVDVDDY---RLSVA-KKLGADNIVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga---g~~G~~~i~~a~~~g~~~vv~~~~~~~---~~~~~-~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+   |++|..+++.+...|++ |++++++.+   ..+.+ ++.+....+..+- +.++..+.+.++.+.. 
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~-   97 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQ-LAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENW-   97 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT-
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHc-
Confidence            5788999984   69999999999889995 888888864   23333 2234322232222 2233344444443333 


Q ss_pred             CCccEEEEcCC
Q 048013          167 TGIDVSFDCAG  177 (216)
Q Consensus       167 ~~~d~vi~~~g  177 (216)
                      +++|++|+++|
T Consensus        98 g~iD~lv~~Ag  108 (285)
T 2p91_A           98 GSLDIIVHSIA  108 (285)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47999999987

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.58  E-value=0.0005  Score=55.87  Aligned_cols=98  Identities=20%  Similarity=0.197  Sum_probs=65.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEE------------eCCCCcccH--HHHHH
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIV------------KVSTNLQDI--AEEVE  159 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~------------~~~~~~~~~--~~~~~  159 (216)
                      .+++++.|.|.|.+|+.+++.++.+|++ |++.|.+.++.+..+++++..+-            .... .++.  .+.+.
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~Gak-VvvsD~~~~~~~~a~~~ga~~v~~~ell~~~~DIliP~A-~~~~I~~~~~~  250 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGAQ-LLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCA-MGGVITTEVAR  250 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEECS-CSCCBCHHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEEeCCccHHHHHHhcCCEEeChHHhhcCccceecHhH-HHhhcCHHHHh
Confidence            5789999999999999999999999995 88999987765566667654220            0000 0110  01111


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEec
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      .      -+.+++++++..+...+.+.+.|..+|.++.-+
T Consensus       251 ~------lk~~iVie~AN~p~t~~eA~~~L~~~gIlv~Pd  284 (355)
T 1c1d_A          251 T------LDCSVVAGAANNVIADEAASDILHARGILYAPD  284 (355)
T ss_dssp             H------CCCSEECCSCTTCBCSHHHHHHHHHTTCEECCH
T ss_pred             h------CCCCEEEECCCCCCCCHHHHHHHHhCCEEEECC
Confidence            1      247888888877433345678888888777544

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=97.58  E-value=0.0021  Score=50.25  Aligned_cols=83  Identities=18%  Similarity=0.222  Sum_probs=54.1

Q ss_pred             CCCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCCh--HHHHHHH-HcCCCEEEeCCCCc-ccHHHHHHHHHHHcC
Q 048013           94 GPETNVLIMGS-G--PIGLVTMLAARAFGAPRIVIVDVDD--YRLSVAK-KLGADNIVKVSTNL-QDIAEEVEKIQKAMG  166 (216)
Q Consensus        94 ~~~~~vlv~Ga-g--~~G~~~i~~a~~~g~~~vv~~~~~~--~~~~~~~-~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~  166 (216)
                      -.++++||+|+ |  ++|..+++.+...|++ |++++++.  +..+.+. +.+....+..+-.+ ++..+.+.++.+.. 
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~-  101 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGAE-LAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVW-  101 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTCE-EEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHC-
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCCE-EEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHc-
Confidence            45789999984 4  4999999999999995 88888876  5555443 34433333333222 33444444544333 


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      .++|++|+++|.
T Consensus       102 g~id~li~nAg~  113 (280)
T 3nrc_A          102 DGLDAIVHSIAF  113 (280)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            479999999873

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.58  E-value=0.0014  Score=54.52  Aligned_cols=97  Identities=16%  Similarity=0.162  Sum_probs=69.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      ...+|+|+|.|.+|..+++.++..|.. |++++.++++.+.+++.|...++- +..+.   +.+++   ..-..+|+++-
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~~-vvvId~d~~~v~~~~~~g~~vi~G-Dat~~---~~L~~---agi~~A~~viv   74 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGVK-MVVLDHDPDHIETLRKFGMKVFYG-DATRM---DLLES---AGAAKAEVLIN   74 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCC-EEEEECCHHHHHHHHHTTCCCEES-CTTCH---HHHHH---TTTTTCSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHhCCCeEEEc-CCCCH---HHHHh---cCCCccCEEEE
Confidence            346799999999999999999999996 999999999999999888775543 22222   22332   23357999999


Q ss_pred             cCCCHHHHHH---HHHHhhcCCEEEEec
Q 048013          175 CAGFNKTMST---ALSATRAGGKVCLVG  199 (216)
Q Consensus       175 ~~g~~~~~~~---~~~~l~~~G~~v~~g  199 (216)
                      ++++......   ..+.+.|.-+++...
T Consensus        75 ~~~~~~~n~~i~~~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           75 AIDDPQTNLQLTEMVKEHFPHLQIIARA  102 (413)
T ss_dssp             CCSSHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CCCChHHHHHHHHHHHHhCCCCeEEEEE
Confidence            9998554333   344455666776544

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.58  E-value=0.00073  Score=52.70  Aligned_cols=82  Identities=21%  Similarity=0.240  Sum_probs=54.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEEeCCC-CcccHHHHHHHHHHHcCCCccE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++++++.+.+ +++.....+..+- +.++..+.++++.+.. +++|+
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~iD~   85 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGAR-VVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRF-GRLDC   85 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHH-SCCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHc-CCCCE
Confidence            5789999996 89999999999999995 89999998876654 3443222222222 2233334444443333 37999


Q ss_pred             EEEcCCC
Q 048013          172 SFDCAGF  178 (216)
Q Consensus       172 vi~~~g~  178 (216)
                      +|+++|.
T Consensus        86 lv~nAg~   92 (270)
T 1yde_A           86 VVNNAGH   92 (270)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999873

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=97.57  E-value=0.00013  Score=56.09  Aligned_cols=101  Identities=17%  Similarity=0.208  Sum_probs=58.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHH-----HHHHHHcCCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEV-----EKIQKAMGTG  168 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  168 (216)
                      .++++||+|+ |++|..+++.+.. |. .|++++++.++.+.+.+......+..     |..+..     .+.. ..-.+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~-~v~~~~r~~~~~~~~~~~~~~~~~~~-----D~~~~~~~~~~~~~~-~~~~~   75 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DH-IVYALGRNPEHLAALAEIEGVEPIES-----DIVKEVLEEGGVDKL-KNLDH   75 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHHTSTTEEEEEC-----CHHHHHHTSSSCGGG-TTCSC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHhhcCCcceec-----ccchHHHHHHHHHHH-HhcCC
Confidence            4688999996 8999998888765 77 58999999888777665432222221     221111     0110 01237


Q ss_pred             ccEEEEcCCCHH-------------------------HHHHHHHHhh-cCCEEEEeccCCC
Q 048013          169 IDVSFDCAGFNK-------------------------TMSTALSATR-AGGKVCLVGMGHR  203 (216)
Q Consensus       169 ~d~vi~~~g~~~-------------------------~~~~~~~~l~-~~G~~v~~g~~~~  203 (216)
                      +|++|+++|...                         ..+.+++.|+ .+|+++.++....
T Consensus        76 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~  136 (245)
T 3e9n_A           76 VDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAG  136 (245)
T ss_dssp             CSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC----
T ss_pred             CCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEcCccc
Confidence            999999998521                         1344555553 3689998886444

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.57  E-value=0.00048  Score=53.51  Aligned_cols=81  Identities=19%  Similarity=0.210  Sum_probs=51.1

Q ss_pred             CCCEEEEEc-C--CHHHHHHHHHHHHcCCCeEEEEcCCh---HHHHHH-HHcCCCEEEeCCCCc-ccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMG-S--GPIGLVTMLAARAFGAPRIVIVDVDD---YRLSVA-KKLGADNIVKVSTNL-QDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~G-a--g~~G~~~i~~a~~~g~~~vv~~~~~~---~~~~~~-~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~  166 (216)
                      .++++||+| +  |++|..+++.+...|++ |+++++++   +..+.+ ++.+....+..+-.+ ++..+.++++.+. -
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-~   85 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKV-W   85 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTT-C
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHH-c
Confidence            568899998 4  69999999999999995 88888876   333333 223433333322222 2333344444322 2


Q ss_pred             CCccEEEEcCC
Q 048013          167 TGIDVSFDCAG  177 (216)
Q Consensus       167 ~~~d~vi~~~g  177 (216)
                      .++|++|+++|
T Consensus        86 g~iD~lv~~Ag   96 (265)
T 1qsg_A           86 PKFDGFVHSIG   96 (265)
T ss_dssp             SSEEEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47999999987

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=97.57  E-value=0.0016  Score=50.94  Aligned_cols=78  Identities=17%  Similarity=0.216  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEE-EeCCCC-cccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNI-VKVSTN-LQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .++++||+|+ +++|.++++.+...|++ |++++++.++.+.+ ++++.... +..+-. .++..+.+.++ + .-.++|
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~-~-~~~~id  105 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGLG-VVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAA-N-QLGRLR  105 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHH-T-TSSEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHH-H-HhCCCC
Confidence            5789999996 89999999999999995 99999998886654 45655432 222222 22333333333 2 234789


Q ss_pred             EEEEc
Q 048013          171 VSFDC  175 (216)
Q Consensus       171 ~vi~~  175 (216)
                      +++.+
T Consensus       106 ~lv~~  110 (281)
T 3ppi_A          106 YAVVA  110 (281)
T ss_dssp             EEEEC
T ss_pred             eEEEc
Confidence            99988

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.57  E-value=0.00066  Score=52.20  Aligned_cols=82  Identities=22%  Similarity=0.286  Sum_probs=54.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH---cCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK---LGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~---~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++++++.+.+ ++   .+... .+..+- +.++..+.+.++.+.. .
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-g   85 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAA-VVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEF-G   85 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc-C
Confidence            5789999996 89999999999999995 99999998876544 22   23322 222222 2233344444444333 3


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|+++|.
T Consensus        86 ~id~li~~Ag~   96 (253)
T 3qiv_A           86 GIDYLVNNAAI   96 (253)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            79999999874

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.57  E-value=0.00054  Score=53.76  Aligned_cols=83  Identities=18%  Similarity=0.203  Sum_probs=53.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH---cCCCEE-EeCCC-CcccHHHHHHHHHHHcC
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK---LGADNI-VKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~---~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      ..++++||+|+ |++|.++++.+...|++ |+++++++++.+.+ ++   .+.... +..+- +.++..+.+.++.+.. 
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-   99 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIA-VYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERF-   99 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc-
Confidence            35789999996 89999999999999995 99999998776543 22   343322 22222 2233344444444333 


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      +++|++|+++|.
T Consensus       100 g~id~lv~nAg~  111 (279)
T 3sju_A          100 GPIGILVNSAGR  111 (279)
T ss_dssp             CSCCEEEECCCC
T ss_pred             CCCcEEEECCCC
Confidence            379999999984

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=97.57  E-value=0.00028  Score=54.33  Aligned_cols=102  Identities=18%  Similarity=0.214  Sum_probs=63.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+.  +  ...++ .+.++..+.+.++.+.. .++|++|
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~--~--~~~D~-~~~~~~~~~~~~~~~~~-g~id~lv   86 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGHK-VAVTHRGSGAPKGLF--G--VEVDV-TDSDAVDRAFTAVEEHQ-GPVEVLV   86 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSSCCCTTSE--E--EECCT-TCHHHHHHHHHHHHHHH-SSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChHHHHHhc--C--eeccC-CCHHHHHHHHHHHHHHc-CCCCEEE
Confidence            4688999996 89999999999999985 888888765433221  1  11222 22233444444443333 3799999


Q ss_pred             EcCCCH-------------------------HHHHHHHHHhhc--CCEEEEeccCCC
Q 048013          174 DCAGFN-------------------------KTMSTALSATRA--GGKVCLVGMGHR  203 (216)
Q Consensus       174 ~~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~~~~  203 (216)
                      +++|..                         ...+.+++.|+.  .|+++.++....
T Consensus        87 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~  143 (247)
T 1uzm_A           87 SNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSG  143 (247)
T ss_dssp             EECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhh
Confidence            998841                         123445555533  479998886443

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.56  E-value=2.7e-05  Score=59.77  Aligned_cols=99  Identities=13%  Similarity=0.112  Sum_probs=64.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCC---EEEeCCCCcccHHHHHHHHHHHcCCCc
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGAD---NIVKVSTNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      ..+|.+||-+|+|. |..+..+++..+. .+++++.+++-.+.+++....   .+..+   ..++.+....   .....|
T Consensus        58 ~~~G~rVLdiG~G~-G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~---~~~a~~~~~~---~~~~~F  129 (236)
T 3orh_A           58 SSKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPL---KGLWEDVAPT---LPDGHF  129 (236)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEE---ESCHHHHGGG---SCTTCE
T ss_pred             ccCCCeEEEECCCc-cHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEE---eehHHhhccc---ccccCC
Confidence            46889999999874 7777777765555 589999999888888764321   11111   1233222222   134569


Q ss_pred             cEE-EEcCCC----------HHHHHHHHHHhhcCCEEEEec
Q 048013          170 DVS-FDCAGF----------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       170 d~v-i~~~g~----------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      |.| +|+...          ...++++.+.|+|||+++.+.
T Consensus       130 D~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          130 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            887 454432          235678899999999998764

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=97.56  E-value=0.0018  Score=51.98  Aligned_cols=106  Identities=18%  Similarity=0.218  Sum_probs=65.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC-----hHHHHHH----HHcCCCE-EEeCC-CCcccHHHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVD-----DYRLSVA----KKLGADN-IVKVS-TNLQDIAEEVEKIQ  162 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~-----~~~~~~~----~~~g~~~-~~~~~-~~~~~~~~~~~~~~  162 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++.++     .++.+.+    +..+... .+..| .+.+++.+.+.++.
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~~G~~-V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~   82 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAGAGHR-VYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII   82 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            3578999996 89999999999999995 8876554     3443333    2334332 22222 22234444555554


Q ss_pred             HHcCCCccEEEEcCCC----------HH---------------HHHHHHHHhh--cCCEEEEeccCC
Q 048013          163 KAMGTGIDVSFDCAGF----------NK---------------TMSTALSATR--AGGKVCLVGMGH  202 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~----------~~---------------~~~~~~~~l~--~~G~~v~~g~~~  202 (216)
                      +.. +++|++|+++|.          .+               .++.+++.|+  ..|+++.++...
T Consensus        83 ~~~-g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~  148 (324)
T 3u9l_A           83 GED-GRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSS  148 (324)
T ss_dssp             HHH-SCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred             HHc-CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecch
Confidence            333 479999999983          11               2345555554  458898887543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.55  E-value=0.00028  Score=52.15  Aligned_cols=103  Identities=19%  Similarity=0.273  Sum_probs=68.6

Q ss_pred             HcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHHH----cCC-CEEEeCCCCcccHHHHHHHHHH
Q 048013           90 RANIGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAKK----LGA-DNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        90 ~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~~----~g~-~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ...++++++||.+|+|. |..++.+++..+ ..+++++|.+++..+.+++    .+. ..+..+..+..++       ..
T Consensus        17 ~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~   88 (197)
T 3eey_A           17 KMFVKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNM-------DK   88 (197)
T ss_dssp             HHHCCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGG-------GG
T ss_pred             HhcCCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH-------hh
Confidence            34578899999999876 778888888764 2269999999988776644    343 2222221211111       11


Q ss_pred             HcCCCccEEEEcCCC---------------HHHHHHHHHHhhcCCEEEEecc
Q 048013          164 AMGTGIDVSFDCAGF---------------NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~---------------~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      .....+|+|+...+-               ...++.+.+.|+|+|++++...
T Consensus        89 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  140 (197)
T 3eey_A           89 YIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY  140 (197)
T ss_dssp             TCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence            124579999876532               2567889999999999987754

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.55  E-value=0.0004  Score=53.69  Aligned_cols=82  Identities=16%  Similarity=0.212  Sum_probs=49.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .++++||+|+ +++|.++++.+...|++ |+++++++++.+.. ++++... .+..+- +.++..+.+.++.+.. +++|
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~id   83 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGAT-VLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEF-GHVH   83 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHc-CCCC
Confidence            5789999996 89999999999999995 88888887765543 4444322 222222 2233444444444333 3799


Q ss_pred             EEEEcCCC
Q 048013          171 VSFDCAGF  178 (216)
Q Consensus       171 ~vi~~~g~  178 (216)
                      ++|+++|.
T Consensus        84 ~lv~nAg~   91 (257)
T 3tpc_A           84 GLVNCAGT   91 (257)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999883

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.54  E-value=0.0015  Score=52.22  Aligned_cols=93  Identities=20%  Similarity=0.139  Sum_probs=63.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEc
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAP-RIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC  175 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~-~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  175 (216)
                      .+|.|+|+|.+|...++.++..|.. .|++.++++++.+.+.+.|......  .+.++.          .-...|+||.+
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~--~~~~~~----------~~~~aDvVila  101 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGT--TSIAKV----------EDFSPDFVMLS  101 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEE--SCTTGG----------GGGCCSEEEEC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhc--CCHHHH----------hhccCCEEEEe
Confidence            6899999999999999999999972 4999999999998888887632111  111110          01257888888


Q ss_pred             CCCHH---HHHHHHHHhhcCCEEEEeccC
Q 048013          176 AGFNK---TMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       176 ~g~~~---~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      +....   .++.....++++..++.++..
T Consensus       102 vp~~~~~~vl~~l~~~l~~~~iv~d~~Sv  130 (314)
T 3ggo_A          102 SPVRTFREIAKKLSYILSEDATVTDQGSV  130 (314)
T ss_dssp             SCGGGHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             CCHHHHHHHHHHHhhccCCCcEEEECCCC
Confidence            88632   334444556667777766643

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.54  E-value=0.0013  Score=51.77  Aligned_cols=87  Identities=16%  Similarity=0.140  Sum_probs=59.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      .+|.|+|+|.+|...++.+...|. .|++.++++++.+.+.+.|....       .+..+.+.        ..|+||.++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~-------~~~~~~~~--------~aDvvi~~v   65 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSPEKAEELAALGAERA-------ATPCEVVE--------SCPVTFAML   65 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEEC-------SSHHHHHH--------HCSEEEECC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCeec-------CCHHHHHh--------cCCEEEEEc
Confidence            478999999999999999999998 49999999998888777665321       12222221        368888888


Q ss_pred             CCHHHHHHHH-------HHhhcCCEEEEec
Q 048013          177 GFNKTMSTAL-------SATRAGGKVCLVG  199 (216)
Q Consensus       177 g~~~~~~~~~-------~~l~~~G~~v~~g  199 (216)
                      ..+...+..+       ..++++..++..+
T Consensus        66 p~~~~~~~v~~~~~~l~~~l~~~~~vi~~s   95 (287)
T 3pef_A           66 ADPAAAEEVCFGKHGVLEGIGEGRGYVDMS   95 (287)
T ss_dssp             SSHHHHHHHHHSTTCHHHHCCTTCEEEECS
T ss_pred             CCHHHHHHHHcCcchHhhcCCCCCEEEeCC
Confidence            8644444443       4455666666554

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=97.53  E-value=0.0012  Score=51.94  Aligned_cols=82  Identities=22%  Similarity=0.299  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHH-----------HHHHHHcCCCEE-EeCC-CCcccHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYR-----------LSVAKKLGADNI-VKVS-TNLQDIAEEVEK  160 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~-----------~~~~~~~g~~~~-~~~~-~~~~~~~~~~~~  160 (216)
                      .++++||+|+ +++|..+++.+...|++ |+++++++++           .+.+++.+.... +..+ .+.++..+.+.+
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   86 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGAN-VALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAK   86 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTCE-EEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence            5789999996 89999999999999995 8888888652           223334454322 2122 222334444555


Q ss_pred             HHHHcCCCccEEEEcCCC
Q 048013          161 IQKAMGTGIDVSFDCAGF  178 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~  178 (216)
                      +.+..+ ++|++|+++|.
T Consensus        87 ~~~~~g-~id~lvnnAg~  103 (285)
T 3sc4_A           87 TVEQFG-GIDICVNNASA  103 (285)
T ss_dssp             HHHHHS-CCSEEEECCCC
T ss_pred             HHHHcC-CCCEEEECCCC
Confidence            543333 79999999984

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.53  E-value=0.00046  Score=55.21  Aligned_cols=103  Identities=24%  Similarity=0.323  Sum_probs=69.7

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHH
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKI  161 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~  161 (216)
                      .++...++++++||.+|+|. |..++.+++..+. .+|+++|.+++..+.+++    .+...+.....   +..+..   
T Consensus        67 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~---d~~~~~---  139 (317)
T 1dl5_A           67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG---DGYYGV---  139 (317)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES---CGGGCC---
T ss_pred             HHHhcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEEC---Chhhcc---
Confidence            34666788999999999876 7778888877542 359999999988777654    35443222111   211101   


Q ss_pred             HHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEe
Q 048013          162 QKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~  198 (216)
                        .....+|+|+....-....+.+.+.|+|+|++++.
T Consensus       140 --~~~~~fD~Iv~~~~~~~~~~~~~~~LkpgG~lvi~  174 (317)
T 1dl5_A          140 --PEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP  174 (317)
T ss_dssp             --GGGCCEEEEEECSBBSCCCHHHHHHEEEEEEEEEE
T ss_pred             --ccCCCeEEEEEcCCHHHHHHHHHHhcCCCcEEEEE
Confidence              01347999998766534446788899999998865

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.52  E-value=0.00042  Score=52.41  Aligned_cols=103  Identities=15%  Similarity=0.110  Sum_probs=68.0

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcC-----CCeEEEEcCChHHHHHHHH----cC-----CCEEEeCCCCcccHHHH
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFG-----APRIVIVDVDDYRLSVAKK----LG-----ADNIVKVSTNLQDIAEE  157 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g-----~~~vv~~~~~~~~~~~~~~----~g-----~~~~~~~~~~~~~~~~~  157 (216)
                      .++++++||.+|+|. |..++.+++..+     ..+|++++.+++..+.+++    .+     ...+.....   +..+.
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~---d~~~~  152 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHK---NIYQV  152 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEEC---CGGGC
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEEC---ChHhc
Confidence            578899999999876 888888888775     1269999999988776654    23     222211111   11111


Q ss_pred             HHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEec
Q 048013          158 VEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       158 ~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ..... .....||+|+.........+.+.+.|+|+|++++.-
T Consensus       153 ~~~~~-~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~  193 (227)
T 2pbf_A          153 NEEEK-KELGLFDAIHVGASASELPEILVDLLAENGKLIIPI  193 (227)
T ss_dssp             CHHHH-HHHCCEEEEEECSBBSSCCHHHHHHEEEEEEEEEEE
T ss_pred             ccccC-ccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEE
Confidence            10000 013479999988776566788899999999988653

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=97.52  E-value=0.0018  Score=49.41  Aligned_cols=82  Identities=22%  Similarity=0.300  Sum_probs=49.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChHHHHH----HHHcCCCE-EEeCCCC-cccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIV-DVDDYRLSV----AKKLGADN-IVKVSTN-LQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~-~~~~~~~~~----~~~~g~~~-~~~~~~~-~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++ ++++++.+.    +++.+... .+..+-. .++..+.+.++.+.. 
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~~-V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-   81 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGAN-IVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAF-   81 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhc-
Confidence            4678999996 99999999999999995 7777 566544432    23334432 2222222 223333444443333 


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      .++|++|.++|.
T Consensus        82 ~~~d~vi~~Ag~   93 (247)
T 2hq1_A           82 GRIDILVNNAGI   93 (247)
T ss_dssp             SCCCEEEECC--
T ss_pred             CCCCEEEECCCC
Confidence            379999999874

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.52  E-value=0.00029  Score=53.88  Aligned_cols=81  Identities=17%  Similarity=0.283  Sum_probs=53.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcC--CCeEEEEcCChHHHHHHHHc-CCC-EEEeCCCCc-ccHHHHHHHHHHHcC-CC
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFG--APRIVIVDVDDYRLSVAKKL-GAD-NIVKVSTNL-QDIAEEVEKIQKAMG-TG  168 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g--~~~vv~~~~~~~~~~~~~~~-g~~-~~~~~~~~~-~~~~~~~~~~~~~~~-~~  168 (216)
                      ++++||+|+ |++|..+++.+...|  + +|++++++.++.+.++++ +.. ..+..+-.+ +...+.++++.+..+ .+
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~~   81 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDG   81 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGC
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCc-EEEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHHHHhcCCCC
Confidence            578999986 999999999999899  7 599999998877666655 222 222222222 233334444433333 26


Q ss_pred             ccEEEEcCC
Q 048013          169 IDVSFDCAG  177 (216)
Q Consensus       169 ~d~vi~~~g  177 (216)
                      +|++|.++|
T Consensus        82 id~li~~Ag   90 (250)
T 1yo6_A           82 LSLLINNAG   90 (250)
T ss_dssp             CCEEEECCC
T ss_pred             CcEEEECCc
Confidence            999999987

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.51  E-value=0.0014  Score=51.96  Aligned_cols=88  Identities=15%  Similarity=0.117  Sum_probs=59.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      .+|.|+|+|.+|...+..+...|.+ |++.++++++.+.+.+.|......  + ..+           .-...|+||.++
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~~~--~-~~e-----------~~~~aDvvi~~v   72 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGLS-TWGADLNPQACANLLAEGACGAAA--S-ARE-----------FAGVVDALVILV   72 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHTTCSEEES--S-STT-----------TTTTCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHcCCccccC--C-HHH-----------HHhcCCEEEEEC
Confidence            5799999999999999999999984 999999999998888877654111  1 111           113467777777


Q ss_pred             CCHHHHHHHH-------HHhhcCCEEEEec
Q 048013          177 GFNKTMSTAL-------SATRAGGKVCLVG  199 (216)
Q Consensus       177 g~~~~~~~~~-------~~l~~~G~~v~~g  199 (216)
                      ..+...+..+       ..++++..++..+
T Consensus        73 p~~~~~~~v~~~~~~l~~~l~~g~ivv~~s  102 (303)
T 3g0o_A           73 VNAAQVRQVLFGEDGVAHLMKPGSAVMVSS  102 (303)
T ss_dssp             SSHHHHHHHHC--CCCGGGSCTTCEEEECS
T ss_pred             CCHHHHHHHHhChhhHHhhCCCCCEEEecC
Confidence            7644444443       3344555555554

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.51  E-value=0.00053  Score=53.00  Aligned_cols=81  Identities=25%  Similarity=0.377  Sum_probs=54.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHH-HHHcCCCE-EEeCCCC-cccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSV-AKKLGADN-IVKVSTN-LQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~-~~~~g~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+. .++++... .+..+-. .++..+.+.++.+.. .++|
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-g~id   88 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGAS-AVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKF-GRVD   88 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHC-CCCC
Confidence            5689999996 99999999999999995 8888888766554 34455432 2222222 223344444443333 3799


Q ss_pred             EEEEcCC
Q 048013          171 VSFDCAG  177 (216)
Q Consensus       171 ~vi~~~g  177 (216)
                      ++|+++|
T Consensus        89 ~li~~Ag   95 (265)
T 2o23_A           89 VAVNCAG   95 (265)
T ss_dssp             EEEECCC
T ss_pred             EEEECCc
Confidence            9999987

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.51  E-value=0.00026  Score=54.05  Aligned_cols=101  Identities=19%  Similarity=0.301  Sum_probs=62.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCc-ccHHHHHHHHHHHcC-CCccEE
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMG-TGIDVS  172 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~d~v  172 (216)
                      ++++||+|+ |++|..+++.+...|++ |+++++++++.+     .....+..+-.+ ++..+.+.++.+..+ .++|++
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~l   76 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGYT-VLNIDLSANDQA-----DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV   76 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCCTTS-----SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEecCccccc-----cccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEE
Confidence            578999996 89999999999999995 888888865432     101111111111 222233333333332 479999


Q ss_pred             EEcCCC--------H---H---------------HHHHHHHHhhcCCEEEEeccCC
Q 048013          173 FDCAGF--------N---K---------------TMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       173 i~~~g~--------~---~---------------~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      |+++|.        .   +               ..+.+++.|+.+|+++.++...
T Consensus        77 v~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  132 (236)
T 1ooe_A           77 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAA  132 (236)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             EECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchh
Confidence            999982        1   0               1344555565678999887543

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=97.51  E-value=0.001  Score=51.55  Aligned_cols=82  Identities=20%  Similarity=0.281  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChHHHHHH----HHcCCCEE-EeCCCC-cccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV-DDYRLSVA----KKLGADNI-VKVSTN-LQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~-~~~~~~~~----~~~g~~~~-~~~~~~-~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++ +.++.+.+    ++.+.... +..+-. .+++.+.++++.+.. 
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-   97 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF-   97 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc-
Confidence            4688999996 99999999999999985 888877 66554432    33354422 222222 223333444443333 


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      .++|++|.++|.
T Consensus        98 ~~~d~vi~~Ag~  109 (274)
T 1ja9_A           98 GGLDFVMSNSGM  109 (274)
T ss_dssp             SCEEEEECCCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999873

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=97.51  E-value=0.0018  Score=50.35  Aligned_cols=83  Identities=18%  Similarity=0.218  Sum_probs=52.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChHHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIV-DVDDYRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~-~~~~~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      .+++++||+|+ |++|.++++.+...|++ |+++ .++.++.+.+    ++.+... .+..+- +.++..+.++++.+..
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  102 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGWR-VGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQF  102 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            45788999996 89999999999999996 6554 7777665443    2334332 222222 2233344444444333


Q ss_pred             CCCccEEEEcCCC
Q 048013          166 GTGIDVSFDCAGF  178 (216)
Q Consensus       166 ~~~~d~vi~~~g~  178 (216)
                       .++|++|.++|.
T Consensus       103 -g~id~li~nAg~  114 (272)
T 4e3z_A          103 -GRLDGLVNNAGI  114 (272)
T ss_dssp             -SCCCEEEECCCC
T ss_pred             -CCCCEEEECCCC
Confidence             379999999883

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.50  E-value=0.0015  Score=51.19  Aligned_cols=91  Identities=21%  Similarity=0.155  Sum_probs=61.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCC-CccEEEE
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAP-RIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGT-GIDVSFD  174 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~-~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~vi~  174 (216)
                      .+|.|+|+|.+|...++.++..|.. .|++.++++++.+.+++.|......  .+..+           .-. ..|+||.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~--~~~~~-----------~~~~~aDvVil   68 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGT--TSIAK-----------VEDFSPDFVML   68 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEE--SCGGG-----------GGGTCCSEEEE
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCccccc--CCHHH-----------HhcCCCCEEEE
Confidence            3688999999999999999988862 4899999999888888887642111  11100           112 5889999


Q ss_pred             cCCCHHH---HHHHHHHhhcCCEEEEecc
Q 048013          175 CAGFNKT---MSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       175 ~~g~~~~---~~~~~~~l~~~G~~v~~g~  200 (216)
                      ++.....   +......++++..++.++.
T Consensus        69 avp~~~~~~v~~~l~~~l~~~~iv~~~~~   97 (281)
T 2g5c_A           69 SSPVRTFREIAKKLSYILSEDATVTDQGS   97 (281)
T ss_dssp             CSCHHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             cCCHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence            8887432   2233344566666666553

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=97.50  E-value=0.00036  Score=53.54  Aligned_cols=75  Identities=16%  Similarity=0.051  Sum_probs=50.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-c--CChHHHHHH-HHc-CCCEEEeCCCCcccHHHHHHHHHHHcCCCc
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIV-D--VDDYRLSVA-KKL-GADNIVKVSTNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~-~--~~~~~~~~~-~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      ++++||+|+ |++|.++++.+...|++ |+++ +  ++.++.+.+ +++ +. .+.    +.++..+.+.++.+. ..++
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~~~~r~~~~~~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~-~g~i   73 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYT-VVCHDASFADAAERQRFESENPGT-IAL----AEQKPERLVDATLQH-GEAI   73 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCE-EEECCGGGGSHHHHHHHHHHSTTE-EEC----CCCCGGGHHHHHGGG-SSCE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCE-EEEecCCcCCHHHHHHHHHHhCCC-ccc----CHHHHHHHHHHHHHH-cCCC
Confidence            467899986 89999999999999995 8888 6  888776654 445 22 121    223333344444322 2479


Q ss_pred             cEEEEcCC
Q 048013          170 DVSFDCAG  177 (216)
Q Consensus       170 d~vi~~~g  177 (216)
                      |++|+++|
T Consensus        74 D~lv~~Ag   81 (244)
T 1zmo_A           74 DTIVSNDY   81 (244)
T ss_dssp             EEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.50  E-value=0.00072  Score=53.27  Aligned_cols=80  Identities=23%  Similarity=0.357  Sum_probs=54.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-HcCCCE-EEeCCCCcccHHHHHHHHHHHcCCCcc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KLGADN-IVKVSTNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      -.++++||+|+ |++|.++++.+...|++ |++++++.++.+.+. +++... .+..+-  .+. +.++++.+.. .++|
T Consensus        14 l~gk~vlVTGas~gIG~~~a~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl--~d~-~~v~~~~~~~-~~iD   88 (291)
T 3rd5_A           14 FAQRTVVITGANSGLGAVTARELARRGAT-VIMAVRDTRKGEAAARTMAGQVEVRELDL--QDL-SSVRRFADGV-SGAD   88 (291)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHTTSSSEEEEEECCT--TCH-HHHHHHHHTC-CCEE
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhcCCeeEEEcCC--CCH-HHHHHHHHhc-CCCC
Confidence            35789999996 89999999999999994 999999988876553 454322 222221  122 2234433223 4799


Q ss_pred             EEEEcCCC
Q 048013          171 VSFDCAGF  178 (216)
Q Consensus       171 ~vi~~~g~  178 (216)
                      ++|+++|.
T Consensus        89 ~lv~nAg~   96 (291)
T 3rd5_A           89 VLINNAGI   96 (291)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcC
Confidence            99999984

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=97.50  E-value=0.00035  Score=53.79  Aligned_cols=108  Identities=16%  Similarity=0.227  Sum_probs=62.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEE-EcCChHHHHHH----HHcCCCEE-EeCCCC-cccHHHHHHHHHHHc-
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVI-VDVDDYRLSVA----KKLGADNI-VKVSTN-LQDIAEEVEKIQKAM-  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~-~~~~~~~~~~~----~~~g~~~~-~~~~~~-~~~~~~~~~~~~~~~-  165 (216)
                      .++++||+|+ +++|..+++.+...|++ |++ ..++.++.+..    ++.+.... +..+-. .++..+.+.++.+.. 
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRLANDGAL-VAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ   84 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHhc
Confidence            5789999996 89999999999999995 655 46665544332    23343321 222211 222233333332211 


Q ss_pred             ----CCCccEEEEcCCCH----------H---------------HHHHHHHHhhcCCEEEEeccCCC
Q 048013          166 ----GTGIDVSFDCAGFN----------K---------------TMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       166 ----~~~~d~vi~~~g~~----------~---------------~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                          ..++|++|+++|..          +               ..+.+++.|+++|+++.++....
T Consensus        85 ~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~  151 (255)
T 3icc_A           85 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAAT  151 (255)
T ss_dssp             HHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGG
T ss_pred             ccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhh
Confidence                23599999998841          1               12333344556789999886443

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=97.49  E-value=0.00046  Score=55.08  Aligned_cols=88  Identities=18%  Similarity=0.192  Sum_probs=65.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .+++|.|+|.|.+|..+++.++.+|++ |++.+++.++ +.+.+.|....        +..    ++.    ...|+|+.
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~~~~~-~~~~~~g~~~~--------~l~----ell----~~aDvV~l  202 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGMN-ILLYDPYPNE-ERAKEVNGKFV--------DLE----TLL----KESDVVTI  202 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCH-HHHHHTTCEEC--------CHH----HHH----HHCSEEEE
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCCE-EEEECCCCCh-hhHhhcCcccc--------CHH----HHH----hhCCEEEE
Confidence            578999999999999999999999995 9999988776 45666776321        222    221    14899999


Q ss_pred             cCCCHH----HH-HHHHHHhhcCCEEEEecc
Q 048013          175 CAGFNK----TM-STALSATRAGGKVCLVGM  200 (216)
Q Consensus       175 ~~g~~~----~~-~~~~~~l~~~G~~v~~g~  200 (216)
                      ++....    .+ ...+..|++++.++.+|-
T Consensus       203 ~~p~~~~t~~li~~~~l~~mk~ga~lin~ar  233 (307)
T 1wwk_A          203 HVPLVESTYHLINEERLKLMKKTAILINTSR  233 (307)
T ss_dssp             CCCCSTTTTTCBCHHHHHHSCTTCEEEECSC
T ss_pred             ecCCChHHhhhcCHHHHhcCCCCeEEEECCC
Confidence            887522    12 456788999999998874

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.49  E-value=0.001  Score=52.12  Aligned_cols=81  Identities=16%  Similarity=0.168  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCC-EEEe--CCC-CcccHHHHHHHHHHHcCCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGAD-NIVK--VST-NLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~-~~~~--~~~-~~~~~~~~~~~~~~~~~~~  168 (216)
                      .++++||+|+ |++|.++++.+...|++ |+++++++++.+.+ +++... .+..  .+- +.++..+.++++.+.. .+
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~  105 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGAR-VFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELS-AR  105 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHC-SC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhc-CC
Confidence            5689999996 89999999999999995 99999998776543 333211 2221  111 2223333444443333 47


Q ss_pred             ccEEEEcCC
Q 048013          169 IDVSFDCAG  177 (216)
Q Consensus       169 ~d~vi~~~g  177 (216)
                      +|++|+++|
T Consensus       106 iD~lvnnAg  114 (276)
T 2b4q_A          106 LDILVNNAG  114 (276)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999998

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.49  E-value=0.0014  Score=49.16  Aligned_cols=92  Identities=13%  Similarity=0.144  Sum_probs=61.5

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      +|||+|+ |.+|..+++.+...|. .|++++++.++.+.+..-+... +..+-.+.+.    ..+     .++|+||.++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~-~~~D~~d~~~----~~~-----~~~d~vi~~a   70 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQKAADRLGATVAT-LVKEPLVLTE----ADL-----DSVDAVVDAL   70 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHTCTTSEE-EECCGGGCCH----HHH-----TTCSEEEECC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecccccccccCCCceE-EecccccccH----hhc-----ccCCEEEECC
Confidence            5899996 9999999999999998 4999999988776553334332 2222222222    222     3699999999


Q ss_pred             CCH----------HHHHHHHHHhhc-CCEEEEecc
Q 048013          177 GFN----------KTMSTALSATRA-GGKVCLVGM  200 (216)
Q Consensus       177 g~~----------~~~~~~~~~l~~-~G~~v~~g~  200 (216)
                      +..          .....+++.++. +++++.++.
T Consensus        71 g~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS  105 (224)
T 3h2s_A           71 SVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILG  105 (224)
T ss_dssp             CCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred             ccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence            861          234556666654 468888863

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=97.49  E-value=0.0021  Score=53.29  Aligned_cols=106  Identities=15%  Similarity=0.146  Sum_probs=68.4

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-----------HcCC--CEEEeCCCCccc
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-----------KLGA--DNIVKVSTNLQD  153 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-----------~~g~--~~~~~~~~~~~~  153 (216)
                      .++...++++++||-+|+|. |..++++++..|+.+++++|.+++-.+.++           .+|.  ..+..+..+..+
T Consensus       165 il~~l~l~~gd~VLDLGCGt-G~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~  243 (438)
T 3uwp_A          165 MIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS  243 (438)
T ss_dssp             HHHHHCCCTTCEEEEESCTT-SHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTS
T ss_pred             HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccC
Confidence            44667899999999999875 788888898888877999999986544443           2343  333222221112


Q ss_pred             HHHHHHHHHHHcCCCccEEEEcCC--C---HHHHHHHHHHhhcCCEEEEec
Q 048013          154 IAEEVEKIQKAMGTGIDVSFDCAG--F---NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~d~vi~~~g--~---~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      .  .....   . ..+|+|+.+.-  .   ...+...++.|+|||+++..-
T Consensus       244 l--p~~d~---~-~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE  288 (438)
T 3uwp_A          244 E--EWRER---I-ANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK  288 (438)
T ss_dssp             H--HHHHH---H-HTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESS
T ss_pred             C--ccccc---c-CCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEee
Confidence            1  11110   0 25899985322  2   234566778899999999875

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.49  E-value=0.00017  Score=54.94  Aligned_cols=101  Identities=25%  Similarity=0.302  Sum_probs=67.5

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCE-EEeCCCCcccHHHHHHHHHHHcC
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADN-IVKVSTNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      ...++++||.+|+| .|..++.+++..+..++++++.+++..+.+++    .+... +.....   +..+.+...  ...
T Consensus        51 ~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~--~~~  124 (233)
T 2gpy_A           51 KMAAPARILEIGTA-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFG---DALQLGEKL--ELY  124 (233)
T ss_dssp             HHHCCSEEEEECCT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS---CGGGSHHHH--TTS
T ss_pred             hccCCCEEEEecCC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC---CHHHHHHhc--ccC
Confidence            34577899999987 58888888888743369999999988777654    35431 222111   222112211  013


Q ss_pred             CCccEEEEcCCC---HHHHHHHHHHhhcCCEEEEe
Q 048013          167 TGIDVSFDCAGF---NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       167 ~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~  198 (216)
                      ..||+|+.....   ...++.+.+.|+|+|++++.
T Consensus       125 ~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          125 PLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             CCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            579999876653   45678888999999999875

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=97.48  E-value=0.0018  Score=56.43  Aligned_cols=104  Identities=22%  Similarity=0.265  Sum_probs=67.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh---------HHHH----HHHHcCCCEEEeCCCCcccHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDD---------YRLS----VAKKLGADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~---------~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~  160 (216)
                      .++++||.|+ +++|.++++.+...|++ |++.+++.         ++.+    .+++.+...+.+.. +..+..+.+.+
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~~Ga~-Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~-d~~~~~~~v~~   84 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAKLGAK-VVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYN-NVLDGDKIVET   84 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECC-----------CHHHHHHHHHHHTTCEEEEECC-CTTCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCE-EEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcC-CHHHHHHHHHH
Confidence            5688999996 89999999999999995 88887653         3322    23334544444443 23344445555


Q ss_pred             HHHHcCCCccEEEEcCCCH-------------------------HHHHHHHHHhhc--CCEEEEeccC
Q 048013          161 IQKAMGTGIDVSFDCAGFN-------------------------KTMSTALSATRA--GGKVCLVGMG  201 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~~  201 (216)
                      ..+..| .+|++++++|..                         ...+.+++.|+.  +|+++.++..
T Consensus        85 ~~~~~G-~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~  151 (604)
T 2et6_A           85 AVKNFG-TVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSP  151 (604)
T ss_dssp             HHHHHS-CCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred             HHHHcC-CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCH
Confidence            543333 699999999841                         134667777743  5899988753

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=97.48  E-value=0.00058  Score=52.62  Aligned_cols=103  Identities=17%  Similarity=0.254  Sum_probs=70.5

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCC--EEEeCCCCcccHHHHHHHHHHHc
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGAD--NIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      ++...++++.+||.+|+| .|..+..+++..+. .++++|.+++..+.+++....  .+.....   +..    ++ ...
T Consensus        48 ~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~~----~~-~~~  117 (266)
T 3ujc_A           48 LSDIELNENSKVLDIGSG-LGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGNNKIIFEAN---DIL----TK-EFP  117 (266)
T ss_dssp             TTTCCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSCTTEEEEEC---CTT----TC-CCC
T ss_pred             HHhcCCCCCCEEEEECCC-CCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEEC---ccc----cC-CCC
Confidence            355667889999999987 47788888887777 599999999999888775432  1111101   110    00 012


Q ss_pred             CCCccEEEEcCCC--------HHHHHHHHHHhhcCCEEEEecc
Q 048013          166 GTGIDVSFDCAGF--------NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       166 ~~~~d~vi~~~g~--------~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      ...+|+|+..-.-        ...++.+.+.|+|+|++++...
T Consensus       118 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  160 (266)
T 3ujc_A          118 ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY  160 (266)
T ss_dssp             TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            4579999985331        2356788899999999988764

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=97.47  E-value=0.00055  Score=53.15  Aligned_cols=78  Identities=18%  Similarity=0.099  Sum_probs=50.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCC-CCcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .++++||+|+ |++|.++++.+...|++ |++++++.++....   .. ..+..+ .+.++..+.+.++.+.. +++|++
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~---~~-~~~~~Dv~d~~~v~~~~~~~~~~~-g~iD~l  100 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNYR-VVATSRSIKPSADP---DI-HTVAGDISKPETADRIVREGIERF-GRIDSL  100 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSCCCCSST---TE-EEEESCTTSHHHHHHHHHHHHHHH-SCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChhhcccC---ce-EEEEccCCCHHHHHHHHHHHHHHC-CCCCEE
Confidence            5689999996 89999999999999995 88888876542211   11 112222 22233444444444333 379999


Q ss_pred             EEcCCC
Q 048013          173 FDCAGF  178 (216)
Q Consensus       173 i~~~g~  178 (216)
                      ++++|.
T Consensus       101 v~nAg~  106 (260)
T 3un1_A          101 VNNAGV  106 (260)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999984

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=97.46  E-value=0.00022  Score=54.01  Aligned_cols=89  Identities=13%  Similarity=0.135  Sum_probs=58.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      .++++||+|+ +++|.++++.+...|++ |++++++.+             .++. +.++..+.+++    . .++|+++
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~-------------~D~~-~~~~v~~~~~~----~-g~id~lv   64 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHTI-VHVASRQTG-------------LDIS-DEKSVYHYFET----I-GAFDHLI   64 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTEE-EEEESGGGT-------------CCTT-CHHHHHHHHHH----H-CSEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEecCCcc-------------cCCC-CHHHHHHHHHH----h-CCCCEEE
Confidence            4678999996 89999999998888984 888887754             1221 22222223322    2 4699999


Q ss_pred             EcCCCH-----------H---------------HHHHHHHHhhcCCEEEEeccCCC
Q 048013          174 DCAGFN-----------K---------------TMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       174 ~~~g~~-----------~---------------~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      +++|..           +               ..+.+++.++++|+++.++....
T Consensus        65 ~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~  120 (223)
T 3uce_A           65 VTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLS  120 (223)
T ss_dssp             ECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGG
T ss_pred             ECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhh
Confidence            998841           0               22444455566889999885443

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.45  E-value=0.0011  Score=51.83  Aligned_cols=88  Identities=15%  Similarity=0.218  Sum_probs=62.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEc
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC  175 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  175 (216)
                      +++++|+|+|++|.+++..+...| ..|++++|+.++.+.+.+++.. ...++    +       +    . .+|+||++
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~nRt~~ka~~la~~~~~-~~~~~----~-------l----~-~~DiVIna  179 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG-LQVSVLNRSSRGLDFFQRLGCD-CFMEP----P-------K----S-AFDLIINA  179 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSCTTHHHHHHHTCE-EESSC----C-------S----S-CCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHCCCe-EecHH----H-------h----c-cCCEEEEc
Confidence            889999999999999999999999 4699999998886655477743 22221    1       1    1 68999998


Q ss_pred             CCCH----HHH--HHHHHHhhcCCEEEEeccC
Q 048013          176 AGFN----KTM--STALSATRAGGKVCLVGMG  201 (216)
Q Consensus       176 ~g~~----~~~--~~~~~~l~~~G~~v~~g~~  201 (216)
                      ++..    ..+  ......++++..++.+-..
T Consensus       180 Tp~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY~  211 (269)
T 3phh_A          180 TSASLHNELPLNKEVLKGYFKEGKLAYDLAYG  211 (269)
T ss_dssp             CTTCCCCSCSSCHHHHHHHHHHCSEEEESCCS
T ss_pred             ccCCCCCCCCCChHHHHhhCCCCCEEEEeCCC
Confidence            8741    011  1222367888888887653

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.44  E-value=0.0012  Score=50.73  Aligned_cols=81  Identities=20%  Similarity=0.303  Sum_probs=54.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCE--EEeCCC-CcccHHHHHHHHHHHcCCCc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADN--IVKVST-NLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~  169 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+ ++++...  .+..+- +.+...+.++++.+  ..++
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--~~~i   86 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGAR-LILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEA--VAPV   86 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHH--HSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHh--hCCC
Confidence            5688999996 99999999999999995 99999998776543 4444332  222222 22233334444432  2479


Q ss_pred             cEEEEcCCC
Q 048013          170 DVSFDCAGF  178 (216)
Q Consensus       170 d~vi~~~g~  178 (216)
                      |++|+++|.
T Consensus        87 d~li~~Ag~   95 (254)
T 2wsb_A           87 SILVNSAGI   95 (254)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEECCcc
Confidence            999999883

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.43  E-value=0.0018  Score=51.77  Aligned_cols=107  Identities=16%  Similarity=0.103  Sum_probs=64.0

Q ss_pred             HHHHHcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC---hHHHHHH-HHc----CCC-EEEeCCCCcccHH
Q 048013           86 HACRRANI-GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD---DYRLSVA-KKL----GAD-NIVKVSTNLQDIA  155 (216)
Q Consensus        86 ~~l~~~~~-~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~---~~~~~~~-~~~----g~~-~~~~~~~~~~~~~  155 (216)
                      ++++..+. -.+++++|+|+|++|.+++..+...|+++|++++|+   .++.+.+ +++    +.. ....++    +. 
T Consensus       143 ~~L~~~~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~----~~-  217 (315)
T 3tnl_A          143 RALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIE----DH-  217 (315)
T ss_dssp             HHHHHTTCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETT----CH-
T ss_pred             HHHHHcCCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccc----hH-
Confidence            44544333 368899999999999999999999999778999998   6665433 333    321 122221    11 


Q ss_pred             HHHHHHHHHcCCCccEEEEcCCCH---H--HHHH-HHHHhhcCCEEEEeccC
Q 048013          156 EEVEKIQKAMGTGIDVSFDCAGFN---K--TMST-ALSATRAGGKVCLVGMG  201 (216)
Q Consensus       156 ~~~~~~~~~~~~~~d~vi~~~g~~---~--~~~~-~~~~l~~~G~~v~~g~~  201 (216)
                      +.+.+..    ..+|+||++++.-   .  .... ....++++..++.+-..
T Consensus       218 ~~l~~~l----~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~~~~~V~DlvY~  265 (315)
T 3tnl_A          218 EQLRKEI----AESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYK  265 (315)
T ss_dssp             HHHHHHH----HTCSEEEECSSTTSTTSTTCCSCCCGGGCCTTCEEEESCCS
T ss_pred             HHHHhhh----cCCCEEEECccCCCCCCCCCCCCCcHHHcCCCCEEEEeccC
Confidence            1122211    2599999999741   1  0001 23346666666666543

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.43  E-value=0.00091  Score=51.08  Aligned_cols=104  Identities=23%  Similarity=0.294  Sum_probs=69.5

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHHH----cCCCE-EEeCCCCcccHHHHHHHHHHH-
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAKK----LGADN-IVKVSTNLQDIAEEVEKIQKA-  164 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~~~~~~~~-  164 (216)
                      ...++++||.+|+|. |..++.+++..+ ..++++++.+++..+.+++    .+... +...   ..+..+.+.++... 
T Consensus        57 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~---~~d~~~~~~~~~~~~  132 (239)
T 2hnk_A           57 KISGAKRIIEIGTFT-GYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLK---LGSALETLQVLIDSK  132 (239)
T ss_dssp             HHHTCSEEEEECCTT-CHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE---ESCHHHHHHHHHHCS
T ss_pred             HhhCcCEEEEEeCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEE---ECCHHHHHHHHHhhc
Confidence            345778999999874 888888998874 2369999999988776654    35432 2221   12333333332110 


Q ss_pred             ---------c-C-CCccEEEEcCCCH---HHHHHHHHHhhcCCEEEEec
Q 048013          165 ---------M-G-TGIDVSFDCAGFN---KTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       165 ---------~-~-~~~d~vi~~~g~~---~~~~~~~~~l~~~G~~v~~g  199 (216)
                               . + ..||+|+......   ..++.+.+.|+|+|++++.-
T Consensus       133 ~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          133 SAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             SCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence                     0 2 5799999876653   55688899999999998753

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=97.43  E-value=0.00073  Score=52.29  Aligned_cols=82  Identities=20%  Similarity=0.210  Sum_probs=52.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH---cCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK---LGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~---~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++++++.+.+ ++   .+... .+..+- +.++..+.+.++.+...+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   82 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGAT-VYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQG   82 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            4688999986 89999999999999995 88899988765543 22   24322 222221 222333344444322134


Q ss_pred             CccEEEEcCC
Q 048013          168 GIDVSFDCAG  177 (216)
Q Consensus       168 ~~d~vi~~~g  177 (216)
                      ++|++|+++|
T Consensus        83 ~id~lvnnAg   92 (260)
T 2qq5_A           83 RLDVLVNNAY   92 (260)
T ss_dssp             CCCEEEECCC
T ss_pred             CceEEEECCc
Confidence            7999999994

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.41  E-value=0.0031  Score=47.69  Aligned_cols=102  Identities=15%  Similarity=0.220  Sum_probs=68.0

Q ss_pred             HcCCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCeEEEEcCChHHHHHHHH----cCCC--EEEeCCCCcccHHHHHHHH
Q 048013           90 RANIGPETNVLIMGSGPIGLVTMLAARAF--GAPRIVIVDVDDYRLSVAKK----LGAD--NIVKVSTNLQDIAEEVEKI  161 (216)
Q Consensus        90 ~~~~~~~~~vlv~Gag~~G~~~i~~a~~~--g~~~vv~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~  161 (216)
                      ..+.+++.+||-+|+|. |..++.+++.+  +. +|+.+|.+++..+.+++    .|..  .+..+.   .+..+.+..+
T Consensus        51 ~~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~---gda~~~l~~~  125 (221)
T 3dr5_A           51 TTNGNGSTGAIAITPAA-GLVGLYILNGLADNT-TLTCIDPESEHQRQAKALFREAGYSPSRVRFLL---SRPLDVMSRL  125 (221)
T ss_dssp             HSCCTTCCEEEEESTTH-HHHHHHHHHHSCTTS-EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEEC---SCHHHHGGGS
T ss_pred             hhCCCCCCCEEEEcCCc-hHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEE---cCHHHHHHHh
Confidence            34445566999999875 88888898876  44 69999999988776643    4544  232221   2333222211


Q ss_pred             HHHcCCCccEEEEcCCC---HHHHHHHHHHhhcCCEEEEec
Q 048013          162 QKAMGTGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~g  199 (216)
                         ....||+||-....   ...++.+.+.|+|+|.++.-.
T Consensus       126 ---~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn  163 (221)
T 3dr5_A          126 ---ANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLAD  163 (221)
T ss_dssp             ---CTTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred             ---cCCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEeC
Confidence               14579999875543   346788999999999999754

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.41  E-value=0.0016  Score=52.67  Aligned_cols=93  Identities=15%  Similarity=0.087  Sum_probs=63.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      .+|.|+|+|.+|..++..++..|.+ |++.++++++.+.+.++|....       .+..+.+.+.    ..+.|+||-++
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~-V~~~dr~~~~~~~a~~~G~~~~-------~~~~e~~~~a----~~~aDlVilav   76 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHS-VFGYNRSRSGAKSAVDEGFDVS-------ADLEATLQRA----AAEDALIVLAV   76 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCC-EEEECSCHHHHHHHHHTTCCEE-------SCHHHHHHHH----HHTTCEEEECS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHcCCeee-------CCHHHHHHhc----ccCCCEEEEeC
Confidence            5799999999999999999999985 9999999999998888887431       1222223221    12478888888


Q ss_pred             CCHHHHHHHHHH---hhcCCEEEEeccCC
Q 048013          177 GFNKTMSTALSA---TRAGGKVCLVGMGH  202 (216)
Q Consensus       177 g~~~~~~~~~~~---l~~~G~~v~~g~~~  202 (216)
                      .. ......++.   ++++..++.++..+
T Consensus        77 P~-~~~~~vl~~l~~~~~~~iv~Dv~Svk  104 (341)
T 3ktd_A           77 PM-TAIDSLLDAVHTHAPNNGFTDVVSVK  104 (341)
T ss_dssp             CH-HHHHHHHHHHHHHCTTCCEEECCSCS
T ss_pred             CH-HHHHHHHHHHHccCCCCEEEEcCCCC
Confidence            86 333333332   35566666666443

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.41  E-value=0.0019  Score=49.69  Aligned_cols=109  Identities=17%  Similarity=0.191  Sum_probs=64.6

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChHHH----HHHHHcCCCE-EEeCCC-CcccHHHHHHHHHHH
Q 048013           93 IGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVD-VDDYRL----SVAKKLGADN-IVKVST-NLQDIAEEVEKIQKA  164 (216)
Q Consensus        93 ~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~-~~~~~~----~~~~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~  164 (216)
                      ..+++++||+|+ |++|..+++.+...|++ |++++ ++.++.    +.+++.+... .+..+- +.++..+.+.++.+.
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFR-VVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAE   88 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTEE-EEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence            356788999986 89999999999999995 66665 443332    2334444432 222222 223344445554433


Q ss_pred             cCCCccEEEEcCCCH----------H---------------HHHHHHHHhhc--CCEEEEeccCCC
Q 048013          165 MGTGIDVSFDCAGFN----------K---------------TMSTALSATRA--GGKVCLVGMGHR  203 (216)
Q Consensus       165 ~~~~~d~vi~~~g~~----------~---------------~~~~~~~~l~~--~G~~v~~g~~~~  203 (216)
                      . .++|++|.++|..          +               ..+.+++.|..  .|+++.++....
T Consensus        89 ~-g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~  153 (256)
T 3ezl_A           89 V-GEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNG  153 (256)
T ss_dssp             T-CCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCG
T ss_pred             c-CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhh
Confidence            3 4799999998841          1               23445555543  489999886544

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=97.41  E-value=0.0015  Score=51.11  Aligned_cols=99  Identities=17%  Similarity=0.186  Sum_probs=68.3

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc----CCC-EEEeCCCCcccHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL----GAD-NIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~----g~~-~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      +...++++.+||.+|+|. |..+..+++..|. .|+++|.+++..+.+++.    +.. .+....   .++    .++  
T Consensus        58 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~---~d~----~~~--  126 (287)
T 1kpg_A           58 GKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLL---AGW----EQF--  126 (287)
T ss_dssp             TTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEE---SCG----GGC--
T ss_pred             HHcCCCCcCEEEEECCcc-cHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEE---CCh----hhC--
Confidence            456678899999999875 7788888877788 599999999887776542    322 221111   121    111  


Q ss_pred             HcCCCccEEEEc-----CC--C-HHHHHHHHHHhhcCCEEEEecc
Q 048013          164 AMGTGIDVSFDC-----AG--F-NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       164 ~~~~~~d~vi~~-----~g--~-~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                        ...+|+|+..     ++  . ...++.+.+.|+|+|++++...
T Consensus       127 --~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  169 (287)
T 1kpg_A          127 --DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  169 (287)
T ss_dssp             --CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             --CCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence              2579999875     22  1 3567889999999999987653

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=97.40  E-value=0.0012  Score=52.08  Aligned_cols=81  Identities=19%  Similarity=0.251  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc--------CCCE-EEeCCC-CcccHHHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL--------GADN-IVKVST-NLQDIAEEVEKIQ  162 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~--------g~~~-~~~~~~-~~~~~~~~~~~~~  162 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+ +++        +... .+..+- +.+++.+.+.++.
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   95 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGSN-VVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   95 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHH
Confidence            4689999996 99999999999999995 89999988765533 222        2222 222221 2223333444443


Q ss_pred             HHcCCCccEEEEcCC
Q 048013          163 KAMGTGIDVSFDCAG  177 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g  177 (216)
                      +.. +++|++|+++|
T Consensus        96 ~~~-g~id~li~~Ag  109 (303)
T 1yxm_A           96 DTF-GKINFLVNNGG  109 (303)
T ss_dssp             HHH-SCCCEEEECCC
T ss_pred             HHc-CCCCEEEECCC
Confidence            333 37999999998

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.40  E-value=0.0018  Score=51.64  Aligned_cols=88  Identities=11%  Similarity=0.054  Sum_probs=60.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEc
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC  175 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  175 (216)
                      -.+|.|+|+|.+|...++.+...|. .|++.++++++.+.+.+.|....       .+..+.+.        ..|+||-+
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~-------~~~~~~~~--------~aDvvi~~   84 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELVEHGASVC-------ESPAEVIK--------KCKYTIAM   84 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEEC-------SSHHHHHH--------HCSEEEEC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCeEc-------CCHHHHHH--------hCCEEEEE
Confidence            3589999999999999999999998 49999999999888877765321       12222221        36788888


Q ss_pred             CCCHHHHHHHH-------HHhhcCCEEEEec
Q 048013          176 AGFNKTMSTAL-------SATRAGGKVCLVG  199 (216)
Q Consensus       176 ~g~~~~~~~~~-------~~l~~~G~~v~~g  199 (216)
                      ++.+..++..+       ..++++..++.++
T Consensus        85 vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~s  115 (310)
T 3doj_A           85 LSDPCAALSVVFDKGGVLEQICEGKGYIDMS  115 (310)
T ss_dssp             CSSHHHHHHHHHSTTCGGGGCCTTCEEEECS
T ss_pred             cCCHHHHHHHHhCchhhhhccCCCCEEEECC
Confidence            87644444444       2344555555554

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.40  E-value=0.0018  Score=49.10  Aligned_cols=101  Identities=10%  Similarity=0.038  Sum_probs=61.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh-HHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD-YRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      -.+++|||+|+|.+|..-++.+...|++ |++++.+. +.++.+.+-+.-..+.......            .-.++|+|
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~-VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~------------dL~~adLV   95 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGAA-ITVVAPTVSAEINEWEAKGQLRVKRKKVGEE------------DLLNVFFI   95 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCCC-EEEECSSCCHHHHHHHHTTSCEEECSCCCGG------------GSSSCSEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEECCCCCHHHHHHHHcCCcEEEECCCCHh------------HhCCCCEE
Confidence            3578999999999999999999999996 77776543 2233333323222222111111            12369999


Q ss_pred             EEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCccc
Q 048013          173 FDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVP  208 (216)
Q Consensus       173 i~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~  208 (216)
                      |-+++++..-..+....+ .|..+.+--.+..-+|-
T Consensus        96 IaAT~d~~~N~~I~~~ak-~gi~VNvvD~p~~~~f~  130 (223)
T 3dfz_A           96 VVATNDQAVNKFVKQHIK-NDQLVNMASSFSDGNIQ  130 (223)
T ss_dssp             EECCCCTHHHHHHHHHSC-TTCEEEC-----CCSEE
T ss_pred             EECCCCHHHHHHHHHHHh-CCCEEEEeCCcccCeEE
Confidence            999999666566666666 78777665333333333

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.40  E-value=0.0016  Score=49.74  Aligned_cols=82  Identities=22%  Similarity=0.302  Sum_probs=53.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-H----cCCCE-EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-K----LGADN-IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~----~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+. +    .+... .+..+- +.+++.+.++++.+. -
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~   83 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGST-VIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNL-V   83 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHh-c
Confidence            4688999996 99999999999889985 899999887655432 2    34332 222222 222333444444333 2


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      .++|++|.++|.
T Consensus        84 ~~~d~vi~~Ag~   95 (248)
T 2pnf_A           84 DGIDILVNNAGI   95 (248)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999883

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=97.40  E-value=0.00076  Score=53.98  Aligned_cols=89  Identities=20%  Similarity=0.215  Sum_probs=64.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      -.+++|.|+|.|.+|..+++.++.+|++ |++.+++.++. .++++|...   .     +..    ++.    ...|+|+
T Consensus       140 l~g~~vgIIG~G~IG~~~A~~l~~~G~~-V~~~d~~~~~~-~~~~~g~~~---~-----~l~----ell----~~aDvVv  201 (313)
T 2ekl_A          140 LAGKTIGIVGFGRIGTKVGIIANAMGMK-VLAYDILDIRE-KAEKINAKA---V-----SLE----ELL----KNSDVIS  201 (313)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTCE-EEEECSSCCHH-HHHHTTCEE---C-----CHH----HHH----HHCSEEE
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEECCCcchh-HHHhcCcee---c-----CHH----HHH----hhCCEEE
Confidence            3578999999999999999999999995 99999887664 456677542   1     222    221    1479999


Q ss_pred             EcCCCHH----HH-HHHHHHhhcCCEEEEecc
Q 048013          174 DCAGFNK----TM-STALSATRAGGKVCLVGM  200 (216)
Q Consensus       174 ~~~g~~~----~~-~~~~~~l~~~G~~v~~g~  200 (216)
                      .++....    .+ ...+..|++++.++.++-
T Consensus       202 l~~P~~~~t~~li~~~~l~~mk~ga~lIn~ar  233 (313)
T 2ekl_A          202 LHVTVSKDAKPIIDYPQFELMKDNVIIVNTSR  233 (313)
T ss_dssp             ECCCCCTTSCCSBCHHHHHHSCTTEEEEESSC
T ss_pred             EeccCChHHHHhhCHHHHhcCCCCCEEEECCC
Confidence            9887422    12 456778899888888874

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.40  E-value=0.0022  Score=50.61  Aligned_cols=86  Identities=14%  Similarity=0.127  Sum_probs=60.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG  177 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  177 (216)
                      +|.|+|+|.+|...+..+...|.+ |++.++++++.+.+.+.|...   .    .+..+.+        ...|+||.+++
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~g~~-V~~~~~~~~~~~~~~~~g~~~---~----~~~~~~~--------~~~D~vi~~v~   70 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKAGYS-LVVSDRNPEAIADVIAAGAET---A----STAKAIA--------EQCDVIITMLP   70 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHTTCEE---C----SSHHHHH--------HHCSEEEECCS
T ss_pred             eEEEECchHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHHHHCCCee---c----CCHHHHH--------hCCCEEEEECC
Confidence            789999999999999988888984 899999998888777665431   1    1222222        14899999998


Q ss_pred             CHHHHHHHH-------HHhhcCCEEEEec
Q 048013          178 FNKTMSTAL-------SATRAGGKVCLVG  199 (216)
Q Consensus       178 ~~~~~~~~~-------~~l~~~G~~v~~g  199 (216)
                      .+...+..+       +.++++..++.++
T Consensus        71 ~~~~~~~~~~~~~~l~~~l~~~~~vv~~s   99 (299)
T 1vpd_A           71 NSPHVKEVALGENGIIEGAKPGTVLIDMS   99 (299)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECS
T ss_pred             CHHHHHHHHhCcchHhhcCCCCCEEEECC
Confidence            655444444       4566777776664

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=97.40  E-value=0.0024  Score=48.63  Aligned_cols=81  Identities=17%  Similarity=0.209  Sum_probs=50.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEE-EcCChHHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVI-VDVDDYRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~-~~~~~~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      ++++||+|+ |++|..+++.+...|++ |++ .+++.++.+.+    ++.+... .+..+- +.++..+.+.++.+. ..
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~-v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~-~g   78 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCK-VLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDA-WG   78 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHH-SS
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHH-cC
Confidence            468899986 99999999999999995 766 57887665433    2234322 122221 223334444444333 34


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.++|.
T Consensus        79 ~id~li~~Ag~   89 (244)
T 1edo_A           79 TIDVVVNNAGI   89 (244)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999873

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.39  E-value=0.001  Score=50.90  Aligned_cols=80  Identities=18%  Similarity=0.238  Sum_probs=52.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc----CCC-EEEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL----GAD-NIVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~----g~~-~~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      ++++||+|+ |++|..+++.+...|++ |++++++.++.+.+ +++    +.. ..+..+- +.++..+.+.++.+.. .
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~   79 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDR-VAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQF-G   79 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh-C
Confidence            578999996 99999999999989984 89999998776543 223    222 1222222 2223334444443333 3


Q ss_pred             CccEEEEcCC
Q 048013          168 GIDVSFDCAG  177 (216)
Q Consensus       168 ~~d~vi~~~g  177 (216)
                      ++|++|.++|
T Consensus        80 ~id~li~~Ag   89 (250)
T 2cfc_A           80 AIDVLVNNAG   89 (250)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999987

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.39  E-value=0.00023  Score=54.34  Aligned_cols=97  Identities=13%  Similarity=0.163  Sum_probs=61.6

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      ++|||+|+ |.+|..+++.+...| + .|++++++.++.+.+..-+.. .+..+-  .+ .+.+.++.    .++|++|.
T Consensus        24 k~vlVtGatG~iG~~l~~~L~~~G~~-~V~~~~R~~~~~~~~~~~~~~-~~~~Dl--~d-~~~~~~~~----~~~D~vv~   94 (236)
T 3qvo_A           24 KNVLILGAGGQIARHVINQLADKQTI-KQTLFARQPAKIHKPYPTNSQ-IIMGDV--LN-HAALKQAM----QGQDIVYA   94 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTE-EEEEEESSGGGSCSSCCTTEE-EEECCT--TC-HHHHHHHH----TTCSEEEE
T ss_pred             cEEEEEeCCcHHHHHHHHHHHhCCCc-eEEEEEcChhhhcccccCCcE-EEEecC--CC-HHHHHHHh----cCCCEEEE
Confidence            57999996 999999999999999 6 588999987664332211221 222211  12 12333332    26899999


Q ss_pred             cCCCHH---HHHHHHHHhhcC--CEEEEeccCC
Q 048013          175 CAGFNK---TMSTALSATRAG--GKVCLVGMGH  202 (216)
Q Consensus       175 ~~g~~~---~~~~~~~~l~~~--G~~v~~g~~~  202 (216)
                      +++...   ..+.+++.++..  ++++.++...
T Consensus        95 ~a~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~~  127 (236)
T 3qvo_A           95 NLTGEDLDIQANSVIAAMKACDVKRLIFVLSLG  127 (236)
T ss_dssp             ECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             cCCCCchhHHHHHHHHHHHHcCCCEEEEEecce
Confidence            998733   235566666544  5899887533

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.39  E-value=0.0035  Score=48.70  Aligned_cols=83  Identities=17%  Similarity=0.285  Sum_probs=51.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChHHHHHH----HHcCCC-EEEeCCC-CcccHHHHHHHHHHHc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVD-VDDYRLSVA----KKLGAD-NIVKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~-~~~~~~~~~----~~~g~~-~~~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      ..++++||+|+ |++|..+++.+...|++ |++++ ++.+..+..    +..+.. ..+..+- +.++..+.+.++.+..
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGMA-VAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADF  101 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            35688999996 89999999999999995 77776 555443322    222332 2222222 2233344444444333


Q ss_pred             CCCccEEEEcCCC
Q 048013          166 GTGIDVSFDCAGF  178 (216)
Q Consensus       166 ~~~~d~vi~~~g~  178 (216)
                       .++|++|.++|.
T Consensus       102 -g~id~li~nAg~  113 (269)
T 3gk3_A          102 -GKVDVLINNAGI  113 (269)
T ss_dssp             -SCCSEEEECCCC
T ss_pred             -CCCCEEEECCCc
Confidence             379999999984

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.39  E-value=0.00055  Score=52.02  Aligned_cols=105  Identities=13%  Similarity=0.140  Sum_probs=68.4

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCC--CEEEeCCCCcccHHHHHHHHHHHc
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGA--DNIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      ++...++++++||.+|+|. |..+..+++..|...|+++|.+++..+.+++.-.  ..+..+..+..+....   .  ..
T Consensus        67 l~~~~~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~---~--~~  140 (230)
T 1fbn_A           67 LKVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEY---A--NI  140 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGG---T--TT
T ss_pred             ccccCCCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccc---c--cc
Confidence            3334577899999999876 7788888888764479999999988877654321  2222111111110000   0  01


Q ss_pred             CCCccEEEEcCCCH----HHHHHHHHHhhcCCEEEEe
Q 048013          166 GTGIDVSFDCAGFN----KTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       166 ~~~~d~vi~~~g~~----~~~~~~~~~l~~~G~~v~~  198 (216)
                      ...+|+|+..+..+    ..++.+.+.|+|+|++++.
T Consensus       141 ~~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          141 VEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             SCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccEEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            24699999766553    3478888899999999885

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=97.38  E-value=0.0023  Score=50.48  Aligned_cols=81  Identities=15%  Similarity=0.203  Sum_probs=53.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc----CCCE-EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL----GADN-IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~----g~~~-~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+ +++    +... .+..+- +.++..+.+.++.+. .
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~  102 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGAQ-CVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV-A  102 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH-T
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHH-c
Confidence            4688999996 99999999999999995 89999998765533 222    4332 222222 223333444444333 3


Q ss_pred             CCccEEEEcCC
Q 048013          167 TGIDVSFDCAG  177 (216)
Q Consensus       167 ~~~d~vi~~~g  177 (216)
                      ..+|++|.++|
T Consensus       103 g~id~li~~Ag  113 (302)
T 1w6u_A          103 GHPNIVINNAA  113 (302)
T ss_dssp             CSCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47999999998

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.38  E-value=0.002  Score=49.59  Aligned_cols=81  Identities=23%  Similarity=0.407  Sum_probs=52.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCCC-cccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVSTN-LQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~~-~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+    ++.+... .+..+-. .++..+.++++.+.. .
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~   89 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGAR-VIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQE-G   89 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc-C
Confidence            5689999996 99999999999999994 99999987765432    2234332 2222222 223333444443322 3


Q ss_pred             CccEEEEcCC
Q 048013          168 GIDVSFDCAG  177 (216)
Q Consensus       168 ~~d~vi~~~g  177 (216)
                      ++|++|.++|
T Consensus        90 ~id~vi~~Ag   99 (260)
T 3awd_A           90 RVDILVACAG   99 (260)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999987

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.38  E-value=0.0015  Score=51.82  Aligned_cols=96  Identities=15%  Similarity=0.125  Sum_probs=64.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHH-HHHHcCCC--EEEeCCCCcccHHHHHHHHHHHcCCCcc
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLS-VAKKLGAD--NIVKVSTNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~-~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      ..+++++|+|+|++|.+++..+...|+..|++++++.++.+ ++++++..  .+.       ++. .+.+.    -..+|
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~-------~~~-~~~~~----~~~aD  206 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYF-------SLA-EAETR----LAEYD  206 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEE-------CHH-HHHHT----GGGCS
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCcee-------eHH-HHHhh----hccCC
Confidence            36789999999999999999999999867999999988865 45566652  121       111 12221    23699


Q ss_pred             EEEEcCCCHHH-----HHHHHHHhhcCCEEEEeccC
Q 048013          171 VSFDCAGFNKT-----MSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       171 ~vi~~~g~~~~-----~~~~~~~l~~~G~~v~~g~~  201 (216)
                      +||++++....     .......++++..++.+...
T Consensus       207 ivIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y~  242 (297)
T 2egg_A          207 IIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYN  242 (297)
T ss_dssp             EEEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCCS
T ss_pred             EEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCCC
Confidence            99999986221     00112346677788888753

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=97.36  E-value=0.00076  Score=50.33  Aligned_cols=98  Identities=22%  Similarity=0.196  Sum_probs=68.0

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccE
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      .+.++.+||.+|+|. |..+..+++. |. .++++|.+++..+.+++.+...+.....+..+       +  .....+|+
T Consensus        43 ~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~-------~--~~~~~~D~  110 (218)
T 3ou2_A           43 AGNIRGDVLELASGT-GYWTRHLSGL-AD-RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFD-------W--TPDRQWDA  110 (218)
T ss_dssp             TTTSCSEEEEESCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHGGGCCTTEEEEECCTTS-------C--CCSSCEEE
T ss_pred             cCCCCCeEEEECCCC-CHHHHHHHhc-CC-eEEEEeCCHHHHHHHHhcCCCCeEEEeccccc-------C--CCCCceeE
Confidence            467888999999875 7777777776 77 59999999999988887663333221111111       1  13467999


Q ss_pred             EEEcCCC--------HHHHHHHHHHhhcCCEEEEeccC
Q 048013          172 SFDCAGF--------NKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       172 vi~~~g~--------~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      |+....-        ...++.+.+.|+|+|++++....
T Consensus       111 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  148 (218)
T 3ou2_A          111 VFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVT  148 (218)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            9975431        34568888999999999887643

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.36  E-value=0.00093  Score=50.42  Aligned_cols=97  Identities=19%  Similarity=0.184  Sum_probs=66.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChHHHHHHHH----cC-----CCEEEeCCCCcccHHHHHHHHH
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAP-RIVIVDVDDYRLSVAKK----LG-----ADNIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~-~vv~~~~~~~~~~~~~~----~g-----~~~~~~~~~~~~~~~~~~~~~~  162 (216)
                      ++++++||.+|+|. |..+..+++..|.. .|+++|.+++..+.+++    .+     ...+.....   +..+.   . 
T Consensus        75 ~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~---d~~~~---~-  146 (226)
T 1i1n_A           75 LHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG---DGRMG---Y-  146 (226)
T ss_dssp             SCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES---CGGGC---C-
T ss_pred             CCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEEC---CcccC---c-
Confidence            78899999999875 77888888877632 69999999988776643    22     122211111   11100   0 


Q ss_pred             HHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEe
Q 048013          163 KAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~  198 (216)
                       .....||+|+........++.+.+.|+|+|++++.
T Consensus       147 -~~~~~fD~i~~~~~~~~~~~~~~~~LkpgG~lv~~  181 (226)
T 1i1n_A          147 -AEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP  181 (226)
T ss_dssp             -GGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             -ccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEE
Confidence             12346999998777656668889999999998865

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.36  E-value=0.0022  Score=51.30  Aligned_cols=89  Identities=15%  Similarity=0.184  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      ...+|.|+|+|.+|...++.+...|.+ |++.++++++.+.+.+.|....       .+.    .+.    -...|+||.
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~-V~~~dr~~~~~~~l~~~g~~~~-------~~~----~e~----~~~aDvVi~   93 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYA-LQVWNRTPARAASLAALGATIH-------EQA----RAA----ARDADIVVS   93 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCE-EEEECSCHHHHHHHHTTTCEEE-------SSH----HHH----HTTCSEEEE
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCe-EEEEcCCHHHHHHHHHCCCEee-------CCH----HHH----HhcCCEEEE
Confidence            345899999999999999999999985 9999999999888776665321       111    111    124788888


Q ss_pred             cCCCHHHHHHHH------HHhhcCCEEEEec
Q 048013          175 CAGFNKTMSTAL------SATRAGGKVCLVG  199 (216)
Q Consensus       175 ~~g~~~~~~~~~------~~l~~~G~~v~~g  199 (216)
                      ++..+...+..+      ..++++..++.++
T Consensus        94 ~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~s  124 (320)
T 4dll_A           94 MLENGAVVQDVLFAQGVAAAMKPGSLFLDMA  124 (320)
T ss_dssp             CCSSHHHHHHHHTTTCHHHHCCTTCEEEECS
T ss_pred             ECCCHHHHHHHHcchhHHhhCCCCCEEEecC
Confidence            888644444433      3455666666665

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=97.36  E-value=0.00079  Score=52.01  Aligned_cols=98  Identities=14%  Similarity=0.140  Sum_probs=64.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHH--HcCC
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQK--AMGT  167 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~  167 (216)
                      .++.+||-+|+|+ |..++.+++......|+.+|.+++..+.+++    ++...+..+..   ++.    ++..  ....
T Consensus        79 ~~~~~vLDiG~G~-G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~---d~~----~~~~~~~~~~  150 (249)
T 3g89_A           79 QGPLRVLDLGTGA-GFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWG---RAE----VLAREAGHRE  150 (249)
T ss_dssp             CSSCEEEEETCTT-TTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEEC---CHH----HHTTSTTTTT
T ss_pred             CCCCEEEEEcCCC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEEC---cHH----HhhcccccCC
Confidence            5688999999764 6666777777543369999999998777643    56654332222   222    2210  0135


Q ss_pred             CccEEEEcCCC--HHHHHHHHHHhhcCCEEEEec
Q 048013          168 GIDVSFDCAGF--NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       168 ~~d~vi~~~g~--~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      .||+|+...-.  ...++.+.+.|+|+|+++.+-
T Consensus       151 ~fD~I~s~a~~~~~~ll~~~~~~LkpgG~l~~~~  184 (249)
T 3g89_A          151 AYARAVARAVAPLCVLSELLLPFLEVGGAAVAMK  184 (249)
T ss_dssp             CEEEEEEESSCCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CceEEEECCcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence            79999875443  356677888999999988753

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.35  E-value=0.00071  Score=52.11  Aligned_cols=102  Identities=19%  Similarity=0.231  Sum_probs=67.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHHH----cCCC-EEEeCCCCcccHHHHHHHHHHHcC
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAKK----LGAD-NIVKVSTNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      ..++++||-+|+|. |..++.+++.++ ..+|+++|.+++..+.+++    .+.. .+...   ..+..+.+..+  ...
T Consensus        61 ~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~---~~d~~~~l~~~--~~~  134 (248)
T 3tfw_A           61 LTQAKRILEIGTLG-GYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLR---EGPALQSLESL--GEC  134 (248)
T ss_dssp             HHTCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEE---ESCHHHHHHTC--CSC
T ss_pred             hcCCCEEEEecCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE---EcCHHHHHHhc--CCC
Confidence            45778999999875 778888888764 3369999999988776654    3554 22221   12333322221  112


Q ss_pred             CCccEEEEcCCC---HHHHHHHHHHhhcCCEEEEecc
Q 048013          167 TGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       167 ~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      ..||+|+-....   ...++.+.+.|+|+|.++.-..
T Consensus       135 ~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          135 PAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             CCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             CCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            479999954433   3567888999999999987653

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.34  E-value=0.0022  Score=50.10  Aligned_cols=86  Identities=16%  Similarity=0.154  Sum_probs=57.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG  177 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  177 (216)
                      +|.|+|+|.+|...+..+...|. .|+++++++++.+.+.+.|......  .   +.    .    .. .+.|+||.++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~--~---~~----~----~~-~~~D~vi~av~   66 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAG--Q---DL----S----LL-QTAKIIFLCTP   66 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEE--S---CG----G----GG-TTCSEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCCCcccc--C---CH----H----Hh-CCCCEEEEECC
Confidence            58899999999999999988898 5999999999888887777642111  1   10    0    12 36888888888


Q ss_pred             CHHHHHHHHHH----hhcCCEEEEec
Q 048013          178 FNKTMSTALSA----TRAGGKVCLVG  199 (216)
Q Consensus       178 ~~~~~~~~~~~----l~~~G~~v~~g  199 (216)
                      . ......++.    ++++..++.++
T Consensus        67 ~-~~~~~~~~~l~~~~~~~~~vv~~~   91 (279)
T 2f1k_A           67 I-QLILPTLEKLIPHLSPTAIVTDVA   91 (279)
T ss_dssp             H-HHHHHHHHHHGGGSCTTCEEEECC
T ss_pred             H-HHHHHHHHHHHhhCCCCCEEEECC
Confidence            6 333333333    34455555543

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=97.34  E-value=0.0016  Score=48.91  Aligned_cols=103  Identities=19%  Similarity=0.239  Sum_probs=68.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHc--CCCeEEEEcCChHHHHHHHH----cCCCE-EEeCCCCcccHHHHHHHHHHHc
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAF--GAPRIVIVDVDDYRLSVAKK----LGADN-IVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~--g~~~vv~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      ..++.+||-+|+|. |..++.+++.+  +. +++++|.+++..+.+++    .+... +..+   ..+..+.+..+....
T Consensus        56 ~~~~~~vLdiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~---~~d~~~~~~~~~~~~  130 (223)
T 3duw_A           56 IQGARNILEIGTLG-GYSTIWLARGLSSGG-RVVTLEASEKHADIARSNIERANLNDRVEVR---TGLALDSLQQIENEK  130 (223)
T ss_dssp             HHTCSEEEEECCTT-SHHHHHHHTTCCSSC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEE---ESCHHHHHHHHHHTT
T ss_pred             hhCCCEEEEecCCc-cHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEE---EcCHHHHHHHHHhcC
Confidence            45778999999874 77788888876  45 69999999988776643    45532 2221   134444443332211


Q ss_pred             CCCccEEEEcCCC---HHHHHHHHHHhhcCCEEEEecc
Q 048013          166 GTGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       166 ~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      ...||+||-....   ...++.+.+.|+|+|.++.-..
T Consensus       131 ~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~  168 (223)
T 3duw_A          131 YEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNV  168 (223)
T ss_dssp             CCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred             CCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            2569999865432   3567888999999998887653

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.33  E-value=0.0016  Score=50.81  Aligned_cols=81  Identities=15%  Similarity=0.094  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChHHHHHH-HHc----CCCE-EEeCCC-Cc----ccHHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV-DDYRLSVA-KKL----GADN-IVKVST-NL----QDIAEEVEKI  161 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~-~~~~~~~~-~~~----g~~~-~~~~~~-~~----~~~~~~~~~~  161 (216)
                      .++++||+|+ |++|..+++.+...|++ |+++++ ++++.+.+ +++    +... .+..+- +.    ++..+.+.++
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   88 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGFR-VVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCS   88 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHH
Confidence            4678999986 89999999999999995 888888 77665433 222    4332 222221 22    2333344444


Q ss_pred             HHHcCCCccEEEEcCC
Q 048013          162 QKAMGTGIDVSFDCAG  177 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g  177 (216)
                      .+.. .++|++|+++|
T Consensus        89 ~~~~-g~id~lv~nAg  103 (276)
T 1mxh_A           89 FRAF-GRCDVLVNNAS  103 (276)
T ss_dssp             HHHH-SCCCEEEECCC
T ss_pred             HHhc-CCCCEEEECCC
Confidence            3333 37999999998

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=97.32  E-value=0.00076  Score=51.81  Aligned_cols=82  Identities=24%  Similarity=0.269  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC-hHHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVD-DYRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~-~~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++ .++.+.+    +..+... .+..+- +.++..+.+.++.+.. 
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-   83 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGAK-VGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKF-   83 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc-
Confidence            4678999986 99999999999989995 8888887 5554432    2224322 222221 2223334444443333 


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      .++|++|.++|.
T Consensus        84 g~id~vi~~Ag~   95 (258)
T 3afn_B           84 GGIDVLINNAGG   95 (258)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999884

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.32  E-value=0.0011  Score=53.05  Aligned_cols=91  Identities=23%  Similarity=0.262  Sum_probs=62.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHH--cCCCeEEEEcCChHH--HHHHHHcCCCEEEeCCCCcccHHHHHHHHHH-HcCCCccE
Q 048013           97 TNVLIMGSGPIGLVTMLAARA--FGAPRIVIVDVDDYR--LSVAKKLGADNIVKVSTNLQDIAEEVEKIQK-AMGTGIDV  171 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~--~g~~~vv~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~  171 (216)
                      -+|.|+|+|.+|...+..+..  .+.+.+.+++++.++  ++.++++|.....      .++    .++.+ +.+.++|+
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~------~~~----e~ll~~~~~~~iDv   74 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY------AGV----EGLIKLPEFADIDF   74 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES------SHH----HHHHHSGGGGGEEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCccc------CCH----HHHHhccCCCCCcE
Confidence            478999999999988888744  456556667887665  5667788875311      122    22221 12357999


Q ss_pred             EEEcCCCHHHHHHHHHHhhc--CCEEEE
Q 048013          172 SFDCAGFNKTMSTALSATRA--GGKVCL  197 (216)
Q Consensus       172 vi~~~g~~~~~~~~~~~l~~--~G~~v~  197 (216)
                      ||++++.....+.+..+++.  +..++.
T Consensus        75 V~~atp~~~h~~~a~~al~a~~Gk~Vi~  102 (312)
T 1nvm_B           75 VFDATSASAHVQNEALLRQAKPGIRLID  102 (312)
T ss_dssp             EEECSCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             EEECCChHHHHHHHHHHHHhCCCCEEEE
Confidence            99999976666778888887  777766

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.32  E-value=0.0045  Score=49.20  Aligned_cols=88  Identities=14%  Similarity=0.120  Sum_probs=59.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEc
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC  175 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  175 (216)
                      ..+|.|+|+|.+|...++.+...|.+ |++.++++++.+.+.+.|...   .    .+..+.+.        ..|+||.+
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~---~----~~~~e~~~--------~aDvVi~~   72 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKR-VAIWNRSPGKAAALVAAGAHL---C----ESVKAALS--------ASPATIFV   72 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSHHHHHHHHHHTCEE---C----SSHHHHHH--------HSSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHCCCee---c----CCHHHHHh--------cCCEEEEE
Confidence            45799999999999999999999986 999999999988877666531   1    12222221        36788888


Q ss_pred             CCCHHHHHHHH-----HHhhcCCEEEEec
Q 048013          176 AGFNKTMSTAL-----SATRAGGKVCLVG  199 (216)
Q Consensus       176 ~g~~~~~~~~~-----~~l~~~G~~v~~g  199 (216)
                      +..+..++..+     ..+.++..++.++
T Consensus        73 vp~~~~~~~v~~~~~l~~~~~g~ivid~s  101 (306)
T 3l6d_A           73 LLDNHATHEVLGMPGVARALAHRTIVDYT  101 (306)
T ss_dssp             CSSHHHHHHHHTSTTHHHHTTTCEEEECC
T ss_pred             eCCHHHHHHHhcccchhhccCCCEEEECC
Confidence            87644344333     2344555666555

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=97.31  E-value=0.00083  Score=56.68  Aligned_cols=91  Identities=22%  Similarity=0.290  Sum_probs=68.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .-.+++|.|+|.|.+|..+++.++.+|+ +|++.+++..+...+...|.. +.       +    +.++    -...|+|
T Consensus       254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~~~~a~~~g~~-~~-------~----l~el----l~~aDiV  316 (479)
T 1v8b_A          254 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGFN-VV-------T----LDEI----VDKGDFF  316 (479)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTCE-EC-------C----HHHH----TTTCSEE
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhhHHHHHHcCCE-ec-------C----HHHH----HhcCCEE
Confidence            4578999999999999999999999999 599999998775444445542 11       1    2222    2368999


Q ss_pred             EEcCCCHHHH-HHHHHHhhcCCEEEEecc
Q 048013          173 FDCAGFNKTM-STALSATRAGGKVCLVGM  200 (216)
Q Consensus       173 i~~~g~~~~~-~~~~~~l~~~G~~v~~g~  200 (216)
                      +.+++....+ ...+..|+++..++.+|-
T Consensus       317 i~~~~t~~lI~~~~l~~MK~gailiNvgr  345 (479)
T 1v8b_A          317 ITCTGNVDVIKLEHLLKMKNNAVVGNIGH  345 (479)
T ss_dssp             EECCSSSSSBCHHHHTTCCTTCEEEECSS
T ss_pred             EECCChhhhcCHHHHhhcCCCcEEEEeCC
Confidence            9998764433 467788999999999984

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=97.31  E-value=0.0008  Score=51.79  Aligned_cols=94  Identities=24%  Similarity=0.340  Sum_probs=59.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEc
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC  175 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  175 (216)
                      +++||+|+ |++|..+++.+...|++ |+++++++++.+.      .    +.. +-.-.+.++++.+....++|++|++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~------~----~~~-Dl~~~~~v~~~~~~~~~~id~lv~~   69 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQ-IVGIDIRDAEVIA------D----LST-AEGRKQAIADVLAKCSKGMDGLVLC   69 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSSSSEEC------C----TTS-HHHHHHHHHHHHTTCTTCCSEEEEC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCchhhcc------c----ccc-CCCCHHHHHHHHHHhCCCCCEEEEC
Confidence            47899996 89999999999999995 8888887654221      0    111 1111123444332222478999999


Q ss_pred             CCCHH------------------HHHHHHHHhhcC--CEEEEeccCC
Q 048013          176 AGFNK------------------TMSTALSATRAG--GKVCLVGMGH  202 (216)
Q Consensus       176 ~g~~~------------------~~~~~~~~l~~~--G~~v~~g~~~  202 (216)
                      +|...                  ..+.+++.|...  |+++.++...
T Consensus        70 Ag~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~  116 (257)
T 1fjh_A           70 AGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVA  116 (257)
T ss_dssp             CCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGG
T ss_pred             CCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChh
Confidence            88521                  235566666543  8999988543

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.31  E-value=0.0017  Score=50.83  Aligned_cols=94  Identities=16%  Similarity=0.192  Sum_probs=63.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHH-HHHcCC--CEEEeCCCCcccHHHHHHHHHHHcCCCcc
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV-AKKLGA--DNIVKVSTNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~-~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      ..+++++|+|+|++|.+++..+...|+.+|++++|+.++.+. +++++.  .....+    ++       +   ....+|
T Consensus       118 l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~----~~-------l---~~~~~D  183 (272)
T 3pwz_A          118 LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRY----EA-------L---EGQSFD  183 (272)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECS----GG-------G---TTCCCS
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeH----HH-------h---cccCCC
Confidence            367899999999999999999999998679999999888654 455653  122221    11       1   114799


Q ss_pred             EEEEcCCCHHH---HHHHHHHhhcCCEEEEeccC
Q 048013          171 VSFDCAGFNKT---MSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       171 ~vi~~~g~~~~---~~~~~~~l~~~G~~v~~g~~  201 (216)
                      +||++++....   ...-...++++..++.+-..
T Consensus       184 ivInaTp~gm~~~~~~i~~~~l~~~~~V~DlvY~  217 (272)
T 3pwz_A          184 IVVNATSASLTADLPPLPADVLGEAALAYELAYG  217 (272)
T ss_dssp             EEEECSSGGGGTCCCCCCGGGGTTCSEEEESSCS
T ss_pred             EEEECCCCCCCCCCCCCCHHHhCcCCEEEEeecC
Confidence            99999875210   00112356777787877654

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=97.31  E-value=0.00053  Score=58.06  Aligned_cols=91  Identities=20%  Similarity=0.276  Sum_probs=68.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .-.++++.|+|.|.+|..+++.++.+|+ +|++.+++..+...+...|... .       +    +.++    -...|+|
T Consensus       274 ~L~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~~~~~~a~~~G~~~-~-------~----l~el----l~~aDiV  336 (494)
T 3d64_A          274 MIAGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDPICALQAAMEGYRV-V-------T----MEYA----ADKADIF  336 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCHHHHHHHHTTTCEE-C-------C----HHHH----TTTCSEE
T ss_pred             ccCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCChHhHHHHHHcCCEe-C-------C----HHHH----HhcCCEE
Confidence            3578999999999999999999999999 4999999987643444445431 1       1    2222    2368999


Q ss_pred             EEcCCCHHHH-HHHHHHhhcCCEEEEecc
Q 048013          173 FDCAGFNKTM-STALSATRAGGKVCLVGM  200 (216)
Q Consensus       173 i~~~g~~~~~-~~~~~~l~~~G~~v~~g~  200 (216)
                      +.+++....+ ...+..|+++..++.+|-
T Consensus       337 i~~~~t~~lI~~~~l~~MK~gAilINvgr  365 (494)
T 3d64_A          337 VTATGNYHVINHDHMKAMRHNAIVCNIGH  365 (494)
T ss_dssp             EECSSSSCSBCHHHHHHCCTTEEEEECSS
T ss_pred             EECCCcccccCHHHHhhCCCCcEEEEcCC
Confidence            9998764433 567889999999999984

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=97.31  E-value=0.0011  Score=57.96  Aligned_cols=103  Identities=19%  Similarity=0.282  Sum_probs=59.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC---------ChHHHH----HHHHcCCCEEEeCCCCcccHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV---------DDYRLS----VAKKLGADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~---------~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~  160 (216)
                      .++++||+|+ +++|.++++.+...|++ |+++++         +.++.+    .+++.+.....++. +..+..+.+.+
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga~-Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~-d~~~~~~~~~~   95 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGAK-VVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYN-SVIDGAKVIET   95 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEC--------------CHHHHHHHHHHTTCCEEECCC-CGGGHHHHHC-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeC-CHHHHHHHHHH
Confidence            5788999996 89999999999999995 888776         433332    33445555555543 23444444444


Q ss_pred             HHHHcCCCccEEEEcCCCH-------------------------HHHHHHHHHhhc--CCEEEEecc
Q 048013          161 IQKAMGTGIDVSFDCAGFN-------------------------KTMSTALSATRA--GGKVCLVGM  200 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~  200 (216)
                      +.+.. +++|++|+++|..                         ...+.+++.|+.  .|+++.++.
T Consensus        96 ~~~~~-g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS  161 (613)
T 3oml_A           96 AIKAF-GRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSS  161 (613)
T ss_dssp             ----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             HHHHC-CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            43322 4799999999841                         124566666654  479998875

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.31  E-value=0.0042  Score=48.91  Aligned_cols=97  Identities=16%  Similarity=0.225  Sum_probs=61.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCC----CEEEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGA----DNIVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      ..+++++|+|+|++|.+++..+...|+++|++++|+.++.+.+ ++++.    ..+...+  .+++.+.+        ..
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~--~~~l~~~l--------~~  194 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVD--ARGIEDVI--------AA  194 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEEC--STTHHHHH--------HH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcC--HHHHHHHH--------hc
Confidence            4678999999999999999999999997799999998876643 44321    1121211  11222222        14


Q ss_pred             ccEEEEcCCCHHH----HHHHHHHhhcCCEEEEecc
Q 048013          169 IDVSFDCAGFNKT----MSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       169 ~d~vi~~~g~~~~----~~~~~~~l~~~G~~v~~g~  200 (216)
                      +|+||++++..-.    .......++++..++.+-.
T Consensus       195 ~DiVInaTp~Gm~~~~~~pi~~~~l~~~~~v~DlvY  230 (283)
T 3jyo_A          195 ADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVY  230 (283)
T ss_dssp             SSEEEECSSTTSTTSCSCSSCGGGCCTTCEEEECCC
T ss_pred             CCEEEECCCCCCCCCCCCCCCHHHhCCCCEEEEecC
Confidence            8999999974100    0111234666666666654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=97.30  E-value=0.00081  Score=52.76  Aligned_cols=98  Identities=17%  Similarity=0.144  Sum_probs=65.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc------CC--CEEEeCCCCcccHHHHHHHHHHHc
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL------GA--DNIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~------g~--~~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      .++++||++|+|. |..+..+++..+..+|++++.+++-.+.+++.      +.  ..+..+   ..|..+.+..    .
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~---~~D~~~~l~~----~  145 (275)
T 1iy9_A           74 PNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQ---VDDGFMHIAK----S  145 (275)
T ss_dssp             SSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEE---ESCSHHHHHT----C
T ss_pred             CCCCEEEEECCch-HHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEE---ECcHHHHHhh----C
Confidence            3568999999764 66666777766666799999999888877652      11  112111   1233222221    3


Q ss_pred             CCCccEEEEcCCC----------HHHHHHHHHHhhcCCEEEEec
Q 048013          166 GTGIDVSFDCAGF----------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       166 ~~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ...||+|+.....          .+.++.+.+.|+|+|.++...
T Consensus       146 ~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          146 ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            4579998875543          367899999999999998764

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.30  E-value=0.00091  Score=50.36  Aligned_cols=95  Identities=17%  Similarity=0.297  Sum_probs=60.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEc
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC  175 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  175 (216)
                      .+|||+|+ |.+|..+++.+...|. .|++++++.++.+.+.  ..-..+..+  -.+. +.+.++.    .++|+||.+
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~--~~~~~~~~D--l~d~-~~~~~~~----~~~d~vi~~   74 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPEKIKIEN--EHLKVKKAD--VSSL-DEVCEVC----KGADAVISA   74 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGGGCCCCC--TTEEEECCC--TTCH-HHHHHHH----TTCSEEEEC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcccchhcc--CceEEEEec--CCCH-HHHHHHh----cCCCEEEEe
Confidence            58999996 9999999999999998 5999999876643221  111122211  1122 2233332    269999999


Q ss_pred             CCCH-----------HHHHHHHHHhhcCC--EEEEeccC
Q 048013          176 AGFN-----------KTMSTALSATRAGG--KVCLVGMG  201 (216)
Q Consensus       176 ~g~~-----------~~~~~~~~~l~~~G--~~v~~g~~  201 (216)
                      ++..           .....+++.++..|  +++.++..
T Consensus        75 a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~  113 (227)
T 3dhn_A           75 FNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGA  113 (227)
T ss_dssp             CCC------CCSHHHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred             CcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCCh
Confidence            9863           23345666666544  88888753

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.30  E-value=0.0022  Score=50.25  Aligned_cols=82  Identities=15%  Similarity=0.199  Sum_probs=52.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HH---cCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KK---LGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~---~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++.+.+ ++   .+... .+..+- +.+++.+.+.++.+. ..
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~-~~  120 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVSH-VICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTE-HK  120 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSE-EEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH-CS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHh-cC
Confidence            4688999996 99999999999888985 88888887765433 22   24332 222222 223333444444332 34


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|.++|.
T Consensus       121 ~id~li~~Ag~  131 (285)
T 2c07_A          121 NVDILVNNAGI  131 (285)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999874

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.30  E-value=0.00063  Score=51.51  Aligned_cols=98  Identities=19%  Similarity=0.227  Sum_probs=66.1

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCC------CeEEEEcCChHHHHHHHHc----C-----CCEEEeCCCCcccHHH
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFGA------PRIVIVDVDDYRLSVAKKL----G-----ADNIVKVSTNLQDIAE  156 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g~------~~vv~~~~~~~~~~~~~~~----g-----~~~~~~~~~~~~~~~~  156 (216)
                      .++++++||.+|+|. |..+..+++..+.      ..|+++|.+++..+.+++.    +     ...+.....   +..+
T Consensus        81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~---d~~~  156 (227)
T 1r18_A           81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG---DGRK  156 (227)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES---CGGG
T ss_pred             hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEEC---Cccc
Confidence            478899999999876 7788888887663      2699999999877766442    2     122211111   1111


Q ss_pred             HHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEe
Q 048013          157 EVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       157 ~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~  198 (216)
                      .   +  .....||+|+....-....+.+.+.|+|+|++++.
T Consensus       157 ~---~--~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~  193 (227)
T 1r18_A          157 G---Y--PPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVP  193 (227)
T ss_dssp             C---C--GGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEE
T ss_pred             C---C--CcCCCccEEEECCchHHHHHHHHHHhcCCCEEEEE
Confidence            0   1  11257999998877656668889999999998764

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=97.29  E-value=0.0014  Score=52.97  Aligned_cols=87  Identities=15%  Similarity=0.209  Sum_probs=63.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .+.+|.|+|.|.+|..+++.++.+|.+ |++.+++.++ +.++++|...        .+..+.+.        ..|+|+.
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~-~~~~~~g~~~--------~~l~~~l~--------~aDvVil  210 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNMR-ILYYSRTRKE-EVERELNAEF--------KPLEDLLR--------ESDFVVL  210 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCH-HHHHHHCCEE--------CCHHHHHH--------HCSEEEE
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCE-EEEECCCcch-hhHhhcCccc--------CCHHHHHh--------hCCEEEE
Confidence            567999999999999999999999984 9999998776 5555566421        12222221        4799999


Q ss_pred             cCCCHH----HH-HHHHHHhhcCCEEEEec
Q 048013          175 CAGFNK----TM-STALSATRAGGKVCLVG  199 (216)
Q Consensus       175 ~~g~~~----~~-~~~~~~l~~~G~~v~~g  199 (216)
                      +++...    .+ ...+..|+++..++.++
T Consensus       211 ~vp~~~~t~~~i~~~~~~~mk~~ailIn~s  240 (334)
T 2dbq_A          211 AVPLTRETYHLINEERLKLMKKTAILINIA  240 (334)
T ss_dssp             CCCCCTTTTTCBCHHHHHHSCTTCEEEECS
T ss_pred             CCCCChHHHHhhCHHHHhcCCCCcEEEECC
Confidence            888633    12 35677888888888776

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=97.29  E-value=0.0023  Score=50.00  Aligned_cols=105  Identities=17%  Similarity=0.184  Sum_probs=66.0

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ....++++++||-.|+|+ |..++.++..+ +...|+++|.++++.+.+++    +|...+..+.   .|..+....+. 
T Consensus        77 ~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~---~D~~~~~~~~~-  151 (274)
T 3ajd_A           77 IVLNPREDDFILDMCAAP-GGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIIN---ADMRKYKDYLL-  151 (274)
T ss_dssp             HHHCCCTTCEEEETTCTT-CHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE---SCHHHHHHHHH-
T ss_pred             HHhCCCCcCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEe---CChHhcchhhh-
Confidence            344678899999988764 55666777765 43479999999988776643    5654332221   23322211110 


Q ss_pred             HcCCCccEEEEc---CCC---------------------HHHHHHHHHHhhcCCEEEEe
Q 048013          164 AMGTGIDVSFDC---AGF---------------------NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       164 ~~~~~~d~vi~~---~g~---------------------~~~~~~~~~~l~~~G~~v~~  198 (216)
                      .....||.|+-.   .+.                     ...++.+++.|+|+|+++..
T Consensus       152 ~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~s  210 (274)
T 3ajd_A          152 KNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYS  210 (274)
T ss_dssp             HTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            124579998863   221                     34567888899999998864

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=97.28  E-value=0.00084  Score=54.58  Aligned_cols=88  Identities=18%  Similarity=0.165  Sum_probs=63.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .++++.|+|.|.+|..+++.++.+|++ |++.+++. +.+.+.+.|...+       .+..+.+.        ..|+|+-
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~~~~~g~~~~-------~~l~ell~--------~aDiV~l  221 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGMN-VLVWGREN-SKERARADGFAVA-------ESKDALFE--------QSDVLSV  221 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSHH-HHHHHHHTTCEEC-------SSHHHHHH--------HCSEEEE
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCCE-EEEECCCC-CHHHHHhcCceEe-------CCHHHHHh--------hCCEEEE
Confidence            478999999999999999999999995 99998875 3455566676421       12222221        4799999


Q ss_pred             cCCCHH-----HHHHHHHHhhcCCEEEEec
Q 048013          175 CAGFNK-----TMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       175 ~~g~~~-----~~~~~~~~l~~~G~~v~~g  199 (216)
                      ++....     .....+..|+++..++.+|
T Consensus       222 ~~Plt~~t~~li~~~~l~~mk~gailIN~a  251 (352)
T 3gg9_A          222 HLRLNDETRSIITVADLTRMKPTALFVNTS  251 (352)
T ss_dssp             CCCCSTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred             eccCcHHHHHhhCHHHHhhCCCCcEEEECC
Confidence            887422     1246778899999999887

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=97.28  E-value=0.0036  Score=54.55  Aligned_cols=104  Identities=18%  Similarity=0.217  Sum_probs=66.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh--HHHHHHHHcCCCEEEeCCCCc-ccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDD--YRLSVAKKLGADNIVKVSTNL-QDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~--~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d  170 (216)
                      .++++||+|+ +++|.++++.+...|++ |++.++..  +..+.+++.+....... .+. .+..+.+.++.+.. +++|
T Consensus       321 ~gkvalVTGas~GIG~a~A~~la~~Ga~-Vv~~~~~~~~~~~~~i~~~g~~~~~~~-~Dv~~~~~~~~~~~~~~~-G~iD  397 (604)
T 2et6_A          321 KDKVVLITGAGAGLGKEYAKWFAKYGAK-VVVNDFKDATKTVDEIKAAGGEAWPDQ-HDVAKDSEAIIKNVIDKY-GTID  397 (604)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEECSSCCHHHHHHHHHTTCEEEEEC-CCHHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCeEEEECcchHHHHHHHHHHHHCCCE-EEEEeCccHHHHHHHHHhcCCeEEEEE-cChHHHHHHHHHHHHHhc-CCCC
Confidence            4678899996 79999999999999995 88777432  22344455555433221 222 23333344443333 3699


Q ss_pred             EEEEcCCCH-------------------------HHHHHHHHHhh--cCCEEEEeccC
Q 048013          171 VSFDCAGFN-------------------------KTMSTALSATR--AGGKVCLVGMG  201 (216)
Q Consensus       171 ~vi~~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~  201 (216)
                      ++++++|..                         ...+.+++.|.  .+|+++.++..
T Consensus       398 iLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~  455 (604)
T 2et6_A          398 ILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITST  455 (604)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCh
Confidence            999999841                         13466777774  35899988753

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=97.28  E-value=0.0012  Score=51.66  Aligned_cols=100  Identities=18%  Similarity=0.222  Sum_probs=68.2

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCeEEEEcCChHHHHHHHHc-----CCCEEEeCCCCcccHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAF--GAPRIVIVDVDDYRLSVAKKL-----GADNIVKVSTNLQDIAEEVEKI  161 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~--g~~~vv~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~  161 (216)
                      +...++++++||.+|+|. |..++.+++..  +. +++++|.+++..+.+++.     |...+.....   ++.+    .
T Consensus       104 ~~~~~~~~~~VLD~G~G~-G~~~~~la~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~---d~~~----~  174 (275)
T 1yb2_A          104 MRCGLRPGMDILEVGVGS-GNMSSYILYALNGKG-TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRS---DIAD----F  174 (275)
T ss_dssp             --CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSS-EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECS---CTTT----C
T ss_pred             HHcCCCCcCEEEEecCCC-CHHHHHHHHHcCCCC-EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEEC---chhc----c
Confidence            456788999999999873 77777888773  44 699999999888777542     5433322111   1111    0


Q ss_pred             HHHcCCCccEEEEcCCCH-HHHHHHHHHhhcCCEEEEec
Q 048013          162 QKAMGTGIDVSFDCAGFN-KTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g~~-~~~~~~~~~l~~~G~~v~~g  199 (216)
                        .....+|+|+...... ..++.+.+.|+|+|++++..
T Consensus       175 --~~~~~fD~Vi~~~~~~~~~l~~~~~~LkpgG~l~i~~  211 (275)
T 1yb2_A          175 --ISDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYL  211 (275)
T ss_dssp             --CCSCCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             --CcCCCccEEEEcCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence              1234699999877653 56788999999999998765

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.27  E-value=0.002  Score=50.65  Aligned_cols=86  Identities=13%  Similarity=0.080  Sum_probs=57.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG  177 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  177 (216)
                      +|.|+|+|.+|...++.+...|.+ |++.++++++.+.+.+.|....       .+..+.+.        ..|+||.++.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-------~~~~~~~~--------~advvi~~v~   66 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFD-VTVWNRNPAKCAPLVALGARQA-------SSPAEVCA--------ACDITIAMLA   66 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCC-EEEECSSGGGGHHHHHHTCEEC-------SCHHHHHH--------HCSEEEECCS
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCe-EEEEcCCHHHHHHHHHCCCeec-------CCHHHHHH--------cCCEEEEEcC
Confidence            688999999999999988888986 9999999998887776665321       12222111        3678888887


Q ss_pred             CHHHHHHHH-------HHhhcCCEEEEec
Q 048013          178 FNKTMSTAL-------SATRAGGKVCLVG  199 (216)
Q Consensus       178 ~~~~~~~~~-------~~l~~~G~~v~~g  199 (216)
                      .+..++..+       ..++++..++..+
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~g~~vv~~s   95 (287)
T 3pdu_A           67 DPAAAREVCFGANGVLEGIGGGRGYIDMS   95 (287)
T ss_dssp             SHHHHHHHHHSTTCGGGTCCTTCEEEECS
T ss_pred             CHHHHHHHHcCchhhhhcccCCCEEEECC
Confidence            754444444       2234445555544

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=97.27  E-value=0.0027  Score=50.82  Aligned_cols=80  Identities=23%  Similarity=0.312  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC---------ChHHHHH----HHHcCCCEEEeCCCCcccHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV---------DDYRLSV----AKKLGADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~---------~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~  160 (216)
                      .++++||+|+ |++|..+++.+...|++ |++.++         +.++.+.    ++..+.....++. +.++..+.+.+
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga~-Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~-~~~~~~~~~~~   85 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGAL-VVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYD-SVEAGEKLVKT   85 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECC-CGGGHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCC-CHHHHHHHHHH
Confidence            5788999996 89999999999999995 777643         4444332    2333444444543 23444455555


Q ss_pred             HHHHcCCCccEEEEcCC
Q 048013          161 IQKAMGTGIDVSFDCAG  177 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g  177 (216)
                      +.+.. .++|++|+++|
T Consensus        86 ~~~~~-g~iD~lVnnAG  101 (319)
T 1gz6_A           86 ALDTF-GRIDVVVNNAG  101 (319)
T ss_dssp             HHHHT-SCCCEEEECCC
T ss_pred             HHHHc-CCCCEEEECCC
Confidence            54333 47999999998

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=97.27  E-value=0.0017  Score=51.68  Aligned_cols=98  Identities=19%  Similarity=0.322  Sum_probs=66.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCC-EEEeCCCCcccHHHHHHHHHHHcCC
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGAD-NIVKVSTNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~  167 (216)
                      ++++++||.+|+|. |..+..+++..|. .|+++|.+++..+.+++    .+.. .+.....+..+       + .....
T Consensus       115 ~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~-~~~~~  184 (312)
T 3vc1_A          115 AGPDDTLVDAGCGR-GGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLD-------T-PFDKG  184 (312)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS-------C-CCCTT
T ss_pred             CCCCCEEEEecCCC-CHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhc-------C-CCCCC
Confidence            78899999999875 7777888887787 59999999988776654    4433 11111111111       0 01235


Q ss_pred             CccEEEEc-----CCCHHHHHHHHHHhhcCCEEEEecc
Q 048013          168 GIDVSFDC-----AGFNKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       168 ~~d~vi~~-----~g~~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      .||+|+..     ......++.+.+.|+|+|++++...
T Consensus       185 ~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~  222 (312)
T 3vc1_A          185 AVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITG  222 (312)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CEeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            79999873     2224677899999999999997763

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=97.26  E-value=0.00098  Score=52.43  Aligned_cols=95  Identities=18%  Similarity=0.242  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-c----CC---------CEEEeCCCCcccHHHHHH
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-L----GA---------DNIVKVSTNLQDIAEEVE  159 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~----g~---------~~~~~~~~~~~~~~~~~~  159 (216)
                      .++++||++|+|. |..+..+++. +..++++++.+++..+.+++ +    +.         ..+..+   ..|..+.+.
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~---~~D~~~~l~  148 (281)
T 1mjf_A           74 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLT---IGDGFEFIK  148 (281)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEE---ESCHHHHHH
T ss_pred             CCCCeEEEEcCCc-CHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEE---ECchHHHhc
Confidence            4678999999764 6666777776 66679999999998888765 3    21         112111   123322222


Q ss_pred             HHHHHcCCCccEEEEcCC----------CHHHHHHHHHHhhcCCEEEEe
Q 048013          160 KIQKAMGTGIDVSFDCAG----------FNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g----------~~~~~~~~~~~l~~~G~~v~~  198 (216)
                          . ...||+|+....          ..+.++.+.+.|+|+|.+++.
T Consensus       149 ----~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~  192 (281)
T 1mjf_A          149 ----N-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  192 (281)
T ss_dssp             ----H-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ----c-cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence                2 457999886554          245678899999999999875

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=97.26  E-value=0.0022  Score=51.25  Aligned_cols=98  Identities=18%  Similarity=0.209  Sum_probs=63.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc-CC-------CEEEeCCCCcccHHHHHHHHHHHc
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL-GA-------DNIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~-g~-------~~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      .++++||++|+|. |..+..+++..+..+|++++.+++..+.+++. ..       ..+..+   ..|..+.+..    .
T Consensus       107 ~~~~~VLdIG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~---~~D~~~~l~~----~  178 (314)
T 2b2c_A          107 PDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLF---CGDGFEFLKN----H  178 (314)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEE---CSCHHHHHHH----C
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEE---EChHHHHHHh----c
Confidence            4568999999764 66667777765545799999999988888763 21       112111   1233333322    3


Q ss_pred             CCCccEEEEcCCC----------HHHHHHHHHHhhcCCEEEEec
Q 048013          166 GTGIDVSFDCAGF----------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       166 ~~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ...||+|+.....          ...++.+.+.|+|+|++++-.
T Consensus       179 ~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          179 KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             TTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             CCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            4579999965532          356788899999999998754

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.25  E-value=0.004  Score=51.94  Aligned_cols=106  Identities=17%  Similarity=0.178  Sum_probs=68.3

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-----------HHcC--CCEEEeCCC-Cc-
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-----------KKLG--ADNIVKVST-NL-  151 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-----------~~~g--~~~~~~~~~-~~-  151 (216)
                      .++...++++++||-+|+|. |..++.+++..|...|++++.+++-.+.+           +.+|  ...+..... .. 
T Consensus       234 ml~~l~l~~g~~VLDLGCGs-G~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~  312 (433)
T 1u2z_A          234 VYQQCQLKKGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV  312 (433)
T ss_dssp             HHHHTTCCTTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred             HHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccc
Confidence            44566788999999999875 88888899887876799999998764443           3356  333322111 11 


Q ss_pred             ccHHHHHHHHHHHcCCCccEEEEc--CCCH---HHHHHHHHHhhcCCEEEEec
Q 048013          152 QDIAEEVEKIQKAMGTGIDVSFDC--AGFN---KTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~d~vi~~--~g~~---~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ..+  .+..    ....||+|+.+  ...+   ..+..+.+.|+|||+++..-
T Consensus       313 ~~~--~~~~----~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          313 DNN--RVAE----LIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             TCH--HHHH----HGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ccc--cccc----ccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEee
Confidence            111  1111    12369999963  2222   33467888899999999873

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.25  E-value=0.0019  Score=48.73  Aligned_cols=103  Identities=20%  Similarity=0.246  Sum_probs=69.0

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHHH----cCCC-EEEeCCCCcccHHHHHHHHHHHc
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAKK----LGAD-NIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      ...++++||.+|+| .|..++.+++.++ ..+++++|.+++..+.+++    .+.. .+..+   ..+..+.+.++.. .
T Consensus        66 ~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~---~~d~~~~~~~~~~-~  140 (229)
T 2avd_A           66 RLIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLR---LKPALETLDELLA-A  140 (229)
T ss_dssp             HHTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEE---ESCHHHHHHHHHH-T
T ss_pred             HhcCCCEEEEEcCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEE---EcCHHHHHHHHHh-c
Confidence            34677899999987 5888888888763 3369999999988776654    3542 22211   1344444433321 1


Q ss_pred             C--CCccEEEEcCCC---HHHHHHHHHHhhcCCEEEEec
Q 048013          166 G--TGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       166 ~--~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      +  ..+|+|+.....   ...++.+.+.|+|+|.++...
T Consensus       141 ~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          141 GEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             TCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence            1  579998876543   356788999999999999854

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=97.24  E-value=0.0016  Score=51.83  Aligned_cols=100  Identities=20%  Similarity=0.232  Sum_probs=64.6

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcC--------CCEEEeCCCCcccHHHHHHHHHH
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLG--------ADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ...++++||++|+|. |..+..+++..+..++++++.+++..+.+++.-        ...+..+   ..|..+.+.    
T Consensus        92 ~~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~---~~Da~~~l~----  163 (304)
T 2o07_A           92 SHPNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLH---VGDGFEFMK----  163 (304)
T ss_dssp             TSSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEE---ESCHHHHHH----
T ss_pred             hCCCCCEEEEECCCc-hHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEE---ECcHHHHHh----
Confidence            345678999999764 666677777655457999999998888776531        1112111   123332222    


Q ss_pred             HcCCCccEEEEcCCC----------HHHHHHHHHHhhcCCEEEEec
Q 048013          164 AMGTGIDVSFDCAGF----------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      .....||+||.....          ...++.+.+.|+|+|.+++-.
T Consensus       164 ~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          164 QNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             TCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             hCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            234579999854432          246788899999999998654

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.24  E-value=0.0015  Score=53.26  Aligned_cols=95  Identities=17%  Similarity=0.238  Sum_probs=64.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      .+|+|+|+|.+|..+++.+.. .. .|.+++++.++.+.+++....  +..+..  +. +.+.++.    .+.|+|++++
T Consensus        17 mkilvlGaG~vG~~~~~~L~~-~~-~v~~~~~~~~~~~~~~~~~~~--~~~d~~--d~-~~l~~~~----~~~DvVi~~~   85 (365)
T 3abi_A           17 MKVLILGAGNIGRAIAWDLKD-EF-DVYIGDVNNENLEKVKEFATP--LKVDAS--NF-DKLVEVM----KEFELVIGAL   85 (365)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHTTTSEE--EECCTT--CH-HHHHHHH----TTCSEEEECC
T ss_pred             cEEEEECCCHHHHHHHHHHhc-CC-CeEEEEcCHHHHHHHhccCCc--EEEecC--CH-HHHHHHH----hCCCEEEEec
Confidence            469999999999998888754 34 588889999888877654322  222222  21 2333332    3689999999


Q ss_pred             CCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          177 GFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       177 g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +.......+-.++..+-.++.++...
T Consensus        86 p~~~~~~v~~~~~~~g~~yvD~s~~~  111 (365)
T 3abi_A           86 PGFLGFKSIKAAIKSKVDMVDVSFMP  111 (365)
T ss_dssp             CGGGHHHHHHHHHHHTCEEEECCCCS
T ss_pred             CCcccchHHHHHHhcCcceEeeeccc
Confidence            98544455555667777888877543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.22  E-value=0.0073  Score=42.66  Aligned_cols=95  Identities=12%  Similarity=0.149  Sum_probs=59.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC-hHHHHHHHH-c--CCCEEEeCCCCcccHHHHHHHHHHHcCCCccE
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD-DYRLSVAKK-L--GADNIVKVSTNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~-~~~~~~~~~-~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      .++++|.|+|.+|...++.+...|.+ |++++++ +++.+.+++ +  +.. ++.-+..+   .+.+.+.   .-.+.|+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~-V~vid~~~~~~~~~~~~~~~~~~~-~i~gd~~~---~~~l~~a---~i~~ad~   74 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQN-VTVISNLPEDDIKQLEQRLGDNAD-VIPGDSND---SSVLKKA---GIDRCRA   74 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHCTTCE-EEESCTTS---HHHHHHH---TTTTCSE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCC-EEEEECCChHHHHHHHHhhcCCCe-EEEcCCCC---HHHHHHc---ChhhCCE
Confidence            46789999999999999999999986 8899887 455544432 2  333 33222211   1223321   2357999


Q ss_pred             EEEcCCCHHHHH---HHHHHhhcCCEEEEe
Q 048013          172 SFDCAGFNKTMS---TALSATRAGGKVCLV  198 (216)
Q Consensus       172 vi~~~g~~~~~~---~~~~~l~~~G~~v~~  198 (216)
                      ++-++++.....   ...+.+.+..+++..
T Consensus        75 vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~  104 (153)
T 1id1_A           75 ILALSDNDADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             EEECSSCHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             EEEecCChHHHHHHHHHHHHHCCCCEEEEE
Confidence            999999844332   233444455566654

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=97.22  E-value=0.00045  Score=56.13  Aligned_cols=90  Identities=16%  Similarity=0.210  Sum_probs=65.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      -.|++|.|+|.|.+|..+++.++.+|++ |++.+++....+.+++.|...+       .+    +.++.    ...|+|+
T Consensus       162 l~gktvGIIG~G~IG~~vA~~l~~~G~~-V~~~dr~~~~~~~~~~~g~~~~-------~~----l~ell----~~aDvV~  225 (351)
T 3jtm_A          162 LEGKTIGTVGAGRIGKLLLQRLKPFGCN-LLYHDRLQMAPELEKETGAKFV-------ED----LNEML----PKCDVIV  225 (351)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCCE-EEEECSSCCCHHHHHHHCCEEC-------SC----HHHHG----GGCSEEE
T ss_pred             ccCCEEeEEEeCHHHHHHHHHHHHCCCE-EEEeCCCccCHHHHHhCCCeEc-------CC----HHHHH----hcCCEEE
Confidence            3578999999999999999999999995 9999988766666666776421       12    22221    2588988


Q ss_pred             EcCCCHH----H-HHHHHHHhhcCCEEEEec
Q 048013          174 DCAGFNK----T-MSTALSATRAGGKVCLVG  199 (216)
Q Consensus       174 ~~~g~~~----~-~~~~~~~l~~~G~~v~~g  199 (216)
                      -++....    . -...+..|+++..++.++
T Consensus       226 l~~Plt~~t~~li~~~~l~~mk~gailIN~a  256 (351)
T 3jtm_A          226 INMPLTEKTRGMFNKELIGKLKKGVLIVNNA  256 (351)
T ss_dssp             ECSCCCTTTTTCBSHHHHHHSCTTEEEEECS
T ss_pred             ECCCCCHHHHHhhcHHHHhcCCCCCEEEECc
Confidence            8877421    1 156677888888888876

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=97.22  E-value=0.0042  Score=48.86  Aligned_cols=99  Identities=17%  Similarity=0.197  Sum_probs=64.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc-CC-------CEEEeCCCCcccHHHHHHHHHHH
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL-GA-------DNIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~-g~-------~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      ..++++||++|+|. |..+..+++..+..++++++.+++..+.+++. ..       ..+..+   ..|..+.+..    
T Consensus        76 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~---~~D~~~~l~~----  147 (283)
T 2i7c_A           76 SKEPKNVLVVGGGD-GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVF---IEDASKFLEN----  147 (283)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEE---ESCHHHHHHH----
T ss_pred             CCCCCeEEEEeCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEE---ECChHHHHHh----
Confidence            45678999999764 55666666665445799999999988888663 21       111111   1233332222    


Q ss_pred             cCCCccEEEEcCCC----------HHHHHHHHHHhhcCCEEEEec
Q 048013          165 MGTGIDVSFDCAGF----------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       165 ~~~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ....+|+|+.....          ...++.+.+.|+|+|++++..
T Consensus       148 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          148 VTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             CCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            25679998863321          367788999999999999774

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=97.21  E-value=0.0021  Score=48.90  Aligned_cols=80  Identities=18%  Similarity=0.237  Sum_probs=50.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChHHHHHH----HHcCCCE-E-EeCCC-CcccHHHHHHHHHHHcC
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIV-DVDDYRLSVA----KKLGADN-I-VKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~-~~~~~~~~~~----~~~g~~~-~-~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      ++++||+|+ |++|..+++.+...|++ |+++ +++.++.+.+    ++.+... . +..+- +.++..+.+.++.+.. 
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~-v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-   78 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFA-LAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVL-   78 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhc-
Confidence            367899986 99999999999989985 7776 7887765543    2234332 2 22222 2223333444443322 


Q ss_pred             CCccEEEEcCC
Q 048013          167 TGIDVSFDCAG  177 (216)
Q Consensus       167 ~~~d~vi~~~g  177 (216)
                      .++|++|.++|
T Consensus        79 ~~~d~li~~Ag   89 (245)
T 2ph3_A           79 GGLDTLVNNAG   89 (245)
T ss_dssp             TCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47999999987

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=97.21  E-value=0.0043  Score=49.05  Aligned_cols=36  Identities=28%  Similarity=0.414  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      ...+|+|+|+|++|..+++.+...|..++.++|.+.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            457899999999999999999999999999998765

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=97.21  E-value=0.00057  Score=55.88  Aligned_cols=92  Identities=18%  Similarity=0.260  Sum_probs=65.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      -.+++|.|+|.|.+|..+++.++.+|+++|++.+++..+.+.++++|...   .    .+.    .++.    ...|+|+
T Consensus       162 l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~---~----~~l----~ell----~~aDvV~  226 (364)
T 2j6i_A          162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARR---V----ENI----EELV----AQADIVT  226 (364)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEE---C----SSH----HHHH----HTCSEEE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEe---c----CCH----HHHH----hcCCEEE
Confidence            36789999999999999999999999843888988776666666676432   1    122    2221    1589999


Q ss_pred             EcCCCHH----HH-HHHHHHhhcCCEEEEecc
Q 048013          174 DCAGFNK----TM-STALSATRAGGKVCLVGM  200 (216)
Q Consensus       174 ~~~g~~~----~~-~~~~~~l~~~G~~v~~g~  200 (216)
                      .++....    .+ ...+..|++++.++.++-
T Consensus       227 l~~P~t~~t~~li~~~~l~~mk~ga~lIn~ar  258 (364)
T 2j6i_A          227 VNAPLHAGTKGLINKELLSKFKKGAWLVNTAR  258 (364)
T ss_dssp             ECCCCSTTTTTCBCHHHHTTSCTTEEEEECSC
T ss_pred             ECCCCChHHHHHhCHHHHhhCCCCCEEEECCC
Confidence            9888631    22 456678888888888873

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.21  E-value=0.001  Score=49.87  Aligned_cols=96  Identities=16%  Similarity=0.163  Sum_probs=60.7

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      +|||+|+ |.+|..+++.+...|+ .|++++++.++.+..  .+. ..+..+-  .+..+.+.+.    -.++|+||.++
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~--~~~-~~~~~D~--~d~~~~~~~~----~~~~d~vi~~a   71 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQVPQY--NNV-KAVHFDV--DWTPEEMAKQ----LHGMDAIINVS   71 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGGSCCC--TTE-EEEECCT--TSCHHHHHTT----TTTCSEEEECC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccchhhc--CCc-eEEEecc--cCCHHHHHHH----HcCCCEEEECC
Confidence            6899996 9999999999999998 599999987664322  111 2222221  1211223332    23799999999


Q ss_pred             CCH---------HHHHHHHHHhhcC--CEEEEeccCCC
Q 048013          177 GFN---------KTMSTALSATRAG--GKVCLVGMGHR  203 (216)
Q Consensus       177 g~~---------~~~~~~~~~l~~~--G~~v~~g~~~~  203 (216)
                      +..         .....+++.++..  ++++.++....
T Consensus        72 g~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  109 (219)
T 3dqp_A           72 GSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFS  109 (219)
T ss_dssp             CCTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred             cCCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence            852         2234555555543  48988885443

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=97.21  E-value=0.0051  Score=47.29  Aligned_cols=101  Identities=16%  Similarity=0.156  Sum_probs=66.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHc--CCCeEEEEcCChHHHHHHHH----cCCC-EEEeCCCCcccHHHHHHHHHHHc
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAF--GAPRIVIVDVDDYRLSVAKK----LGAD-NIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~--g~~~vv~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      ..++++||-+|+|. |..++.+++.+  +. +++.+|.+++..+.+++    .+.. .+..+   ..+..+.+..+....
T Consensus        77 ~~~~~~VLeiG~G~-G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~---~gda~~~l~~l~~~~  151 (247)
T 1sui_A           77 LINAKNTMEIGVYT-GYSLLATALAIPEDG-KILAMDINKENYELGLPVIKKAGVDHKIDFR---EGPALPVLDEMIKDE  151 (247)
T ss_dssp             HTTCCEEEEECCGG-GHHHHHHHHHSCTTC-EEEEEESCCHHHHHHHHHHHHTTCGGGEEEE---ESCHHHHHHHHHHSG
T ss_pred             hhCcCEEEEeCCCc-CHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCCeEEE---ECCHHHHHHHHHhcc
Confidence            45678999999874 77788888876  45 69999999988776644    4543 22211   124434333332111


Q ss_pred             --CCCccEEEEcCCC---HHHHHHHHHHhhcCCEEEEe
Q 048013          166 --GTGIDVSFDCAGF---NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       166 --~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~  198 (216)
                        ...||+||-....   ...++.+.+.|+|+|.++.-
T Consensus       152 ~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          152 KNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             GGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             CCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEe
Confidence              3579999865432   35678899999999999864

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=97.20  E-value=0.0012  Score=52.43  Aligned_cols=98  Identities=18%  Similarity=0.170  Sum_probs=62.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcC--------CCEEEeCCCCcccHHHHHHHHHHHc
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLG--------ADNIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      ..+++||++|+|. |..+..+++..+..+|++++.+++..+.+++.-        ...+..+   ..|..+.+.    ..
T Consensus        89 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~---~~D~~~~l~----~~  160 (296)
T 1inl_A           89 PNPKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIV---IANGAEYVR----KF  160 (296)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEE---ESCHHHHGG----GC
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEE---ECcHHHHHh----hC
Confidence            4568999999764 666667777655557999999998888776521        1112111   123322221    13


Q ss_pred             CCCccEEEEcCCC-----------HHHHHHHHHHhhcCCEEEEec
Q 048013          166 GTGIDVSFDCAGF-----------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       166 ~~~~d~vi~~~g~-----------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ...||+|+.....           ...++.+.+.|+|+|++++..
T Consensus       161 ~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  205 (296)
T 1inl_A          161 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  205 (296)
T ss_dssp             SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            4579998854322           356788899999999999764

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.20  E-value=0.006  Score=50.52  Aligned_cols=98  Identities=15%  Similarity=0.141  Sum_probs=60.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC--CeEEEEcCChHHHHHH-HHcCC-----CEEEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGA--PRIVIVDVDDYRLSVA-KKLGA-----DNIVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~--~~vv~~~~~~~~~~~~-~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      .+|+|+|+|++|..+++.+...|.  ..|++.+++.++.+.+ ++++.     -..+..+..+.   +.+.++.+..  +
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~---~~l~~~l~~~--~   76 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSI---EELVALINEV--K   76 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCH---HHHHHHHHHH--C
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCH---HHHHHHHHhh--C
Confidence            368999999999999998888773  3688999998886654 34431     12222222211   1233322111  5


Q ss_pred             ccEEEEcCCCHHHHHHHHHHhhcCCEEEEec
Q 048013          169 IDVSFDCAGFNKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       169 ~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      +|+||++++..........+++.+-.++.+.
T Consensus        77 ~DvVin~ag~~~~~~v~~a~l~~g~~vvD~a  107 (405)
T 4ina_A           77 PQIVLNIALPYQDLTIMEACLRTGVPYLDTA  107 (405)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHHTCCEEESS
T ss_pred             CCEEEECCCcccChHHHHHHHHhCCCEEEec
Confidence            8999999997443344455566666777653

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=97.20  E-value=0.0066  Score=45.47  Aligned_cols=99  Identities=9%  Similarity=0.061  Sum_probs=65.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHcCCCc
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      .++..||-+|+|. |..++.+++...-.+++++|.+++..+.+++    .+...+..+..+..+    +...  .....+
T Consensus        37 ~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~----l~~~--~~~~~~  109 (213)
T 2fca_A           37 NDNPIHIEVGTGK-GQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT----LTDV--FEPGEV  109 (213)
T ss_dssp             SCCCEEEEECCTT-SHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG----HHHH--CCTTSC
T ss_pred             CCCceEEEEecCC-CHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH----HHhh--cCcCCc
Confidence            3677899999875 7788888887633369999999988776643    455443332222222    1111  123468


Q ss_pred             cEEEEcCCC--------------HHHHHHHHHHhhcCCEEEEec
Q 048013          170 DVSFDCAGF--------------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       170 d~vi~~~g~--------------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      |.|+-....              ...++.+.+.|+|+|++++..
T Consensus       110 d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t  153 (213)
T 2fca_A          110 KRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  153 (213)
T ss_dssp             CEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             CEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence            988765432              356788999999999998654

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.20  E-value=0.0024  Score=50.27  Aligned_cols=101  Identities=9%  Similarity=0.034  Sum_probs=63.9

Q ss_pred             HHHHHcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHH-HHHcCCC---EEEeCCCCcccHHHHHHH
Q 048013           86 HACRRANI-GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV-AKKLGAD---NIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        86 ~~l~~~~~-~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~-~~~~g~~---~~~~~~~~~~~~~~~~~~  160 (216)
                      ++++..+. -.+++++|+|+|++|.+++..+...|+.+|++++|+.++.+. +++++..   ....++           +
T Consensus       115 ~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~-----------~  183 (281)
T 3o8q_A          115 QDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFE-----------Q  183 (281)
T ss_dssp             HHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG-----------G
T ss_pred             HHHHHhCCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHH-----------H
Confidence            34543332 367899999999999999999999998679999999887554 4445431   222211           1


Q ss_pred             HHHHcCCCccEEEEcCCCHHHHH---HHHHHhhcCCEEEEeccC
Q 048013          161 IQKAMGTGIDVSFDCAGFNKTMS---TALSATRAGGKVCLVGMG  201 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~~~~~---~~~~~l~~~G~~v~~g~~  201 (216)
                          ....+|+||++++....-.   .-...++++..++.+...
T Consensus       184 ----l~~~aDiIInaTp~gm~~~~~~l~~~~l~~~~~V~DlvY~  223 (281)
T 3o8q_A          184 ----LKQSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDMMYG  223 (281)
T ss_dssp             ----CCSCEEEEEECSCCCC----CSCCGGGEEEEEEEEESCCC
T ss_pred             ----hcCCCCEEEEcCcCCCCCCCCCCCHHHhCcCCEEEEecCC
Confidence                1247999999998521100   012345666666776543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.20  E-value=0.0075  Score=45.30  Aligned_cols=92  Identities=16%  Similarity=0.021  Sum_probs=60.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-HcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      +|+|+|+|.+|..+++.+...|.+ |+++++++++.+.+. ..+...+ .-+..+   .+.+.+   ..-..+|+++-++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~-v~vid~~~~~~~~l~~~~~~~~i-~gd~~~---~~~l~~---a~i~~ad~vi~~~   73 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYG-VVIINKDRELCEEFAKKLKATII-HGDGSH---KEILRD---AEVSKNDVVVILT   73 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCC-EEEEESCHHHHHHHHHHSSSEEE-ESCTTS---HHHHHH---HTCCTTCEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCe-EEEEECCHHHHHHHHHHcCCeEE-EcCCCC---HHHHHh---cCcccCCEEEEec
Confidence            588999999999999999999996 999999999887754 4565433 322222   122332   2335799999999


Q ss_pred             CCHHHHHHHHHHh---hcCCEEEE
Q 048013          177 GFNKTMSTALSAT---RAGGKVCL  197 (216)
Q Consensus       177 g~~~~~~~~~~~l---~~~G~~v~  197 (216)
                      +++.....+....   .+..+++.
T Consensus        74 ~~d~~n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           74 PRDEVNLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             SCHHHHHHHHHHHHHTSCCCEEEE
T ss_pred             CCcHHHHHHHHHHHHHcCCCeEEE
Confidence            9854333333333   33445554

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.20  E-value=0.0012  Score=51.62  Aligned_cols=96  Identities=14%  Similarity=0.105  Sum_probs=61.4

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEc
Q 048013           98 NVLIMGS-GPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC  175 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  175 (216)
                      +|||+|+ |.+|..+++.+... |.+ |++++++.++...+...+... +..+-.  +. +.+.+.    -.++|+||.+
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~-V~~~~R~~~~~~~~~~~~v~~-~~~D~~--d~-~~l~~~----~~~~d~vi~~   72 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDH-FHIGVRNVEKVPDDWRGKVSV-RQLDYF--NQ-ESMVEA----FKGMDTVVFI   72 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTT-EEEEESSGGGSCGGGBTTBEE-EECCTT--CH-HHHHHH----TTTCSEEEEC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCc-EEEEECCHHHHHHhhhCCCEE-EEcCCC--CH-HHHHHH----HhCCCEEEEe
Confidence            5899996 99999999988877 886 888889887654433333332 222211  21 223332    2479999999


Q ss_pred             CCCH-------HHHHHHHHHhhcCC--EEEEeccCC
Q 048013          176 AGFN-------KTMSTALSATRAGG--KVCLVGMGH  202 (216)
Q Consensus       176 ~g~~-------~~~~~~~~~l~~~G--~~v~~g~~~  202 (216)
                      ++..       .....+++.++..|  +++.++...
T Consensus        73 a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~  108 (289)
T 3e48_A           73 PSIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYA  108 (289)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred             CCCCccchhhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence            8851       23456666666544  788887533

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.19  E-value=0.00017  Score=54.69  Aligned_cols=102  Identities=21%  Similarity=0.187  Sum_probs=67.8

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCC--EEEeCCCCcccHHHHHHHHHHH
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGAD--NIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      .++...+.++++||.+|+|. |..+..+++.. . .++++|.+++..+.+++....  .+.....   +..+.   +  .
T Consensus        62 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~-~-~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~---d~~~~---~--~  130 (231)
T 1vbf_A           62 MLDELDLHKGQKVLEIGTGI-GYYTALIAEIV-D-KVVSVEINEKMYNYASKLLSYYNNIKLILG---DGTLG---Y--E  130 (231)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHS-S-EEEEEESCHHHHHHHHHHHTTCSSEEEEES---CGGGC---C--G
T ss_pred             HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHHc-C-EEEEEeCCHHHHHHHHHHHhhcCCeEEEEC---Ccccc---c--c
Confidence            34556778999999999875 77777777764 4 699999999988887653211  1111111   11110   1  1


Q ss_pred             cCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEec
Q 048013          165 MGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       165 ~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ....+|+|+....-......+.+.|+|+|++++.-
T Consensus       131 ~~~~fD~v~~~~~~~~~~~~~~~~L~pgG~l~~~~  165 (231)
T 1vbf_A          131 EEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPI  165 (231)
T ss_dssp             GGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             cCCCccEEEECCcHHHHHHHHHHHcCCCcEEEEEE
Confidence            23579999987664344567889999999988664

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=97.18  E-value=0.0024  Score=48.63  Aligned_cols=95  Identities=18%  Similarity=0.157  Sum_probs=64.1

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccE
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      .++++.+||-+|+|. |..+..+++. |.+ ++++|.+++..+.+++.  -..+.     .+..+.+..   .....||+
T Consensus        38 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~-v~gvD~s~~~~~~a~~~--~~~~~-----~d~~~~~~~---~~~~~fD~  104 (240)
T 3dli_A           38 YFKGCRRVLDIGCGR-GEFLELCKEE-GIE-SIGVDINEDMIKFCEGK--FNVVK-----SDAIEYLKS---LPDKYLDG  104 (240)
T ss_dssp             GTTTCSCEEEETCTT-THHHHHHHHH-TCC-EEEECSCHHHHHHHHTT--SEEEC-----SCHHHHHHT---SCTTCBSE
T ss_pred             hhcCCCeEEEEeCCC-CHHHHHHHhC-CCc-EEEEECCHHHHHHHHhh--cceee-----ccHHHHhhh---cCCCCeeE
Confidence            357889999999864 5556666664 875 99999999988888765  22221     222222111   13467999


Q ss_pred             EEEcC-----CC---HHHHHHHHHHhhcCCEEEEec
Q 048013          172 SFDCA-----GF---NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       172 vi~~~-----g~---~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      |+..-     ..   ...++.+.+.|+|+|++++.-
T Consensus       105 i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  140 (240)
T 3dli_A          105 VMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIES  140 (240)
T ss_dssp             EEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEE
T ss_pred             EEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            98742     22   356788999999999998654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.17  E-value=0.0036  Score=45.39  Aligned_cols=101  Identities=20%  Similarity=0.245  Sum_probs=67.8

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCC-CEEEeCCCCcccHHHHHHHHH
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGA-DNIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~-~~~~~~~~~~~~~~~~~~~~~  162 (216)
                      ++...+.++++||.+|+|. |..+..+++.. . .++++|.+++..+.+++    .+. ..+...   ..++.+.+.   
T Consensus        26 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~-~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~---~~d~~~~~~---   96 (192)
T 1l3i_A           26 MCLAEPGKNDVAVDVGCGT-GGVTLELAGRV-R-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLM---EGDAPEALC---   96 (192)
T ss_dssp             HHHHCCCTTCEEEEESCTT-SHHHHHHHTTS-S-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEE---ESCHHHHHT---
T ss_pred             HHhcCCCCCCEEEEECCCC-CHHHHHHHHhc-C-EEEEEECCHHHHHHHHHHHHHcCCCcceEEE---ecCHHHhcc---
Confidence            3455678899999999876 77777777765 4 69999999988777654    444 222211   123322111   


Q ss_pred             HHcCCCccEEEEcCCC---HHHHHHHHHHhhcCCEEEEec
Q 048013          163 KAMGTGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~g  199 (216)
                        ....+|+|+.....   ...++.+.+.|+|+|++++..
T Consensus        97 --~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~  134 (192)
T 1l3i_A           97 --KIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA  134 (192)
T ss_dssp             --TSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --cCCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEe
Confidence              11479999976541   356788888999999998764

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=97.17  E-value=0.0011  Score=49.47  Aligned_cols=100  Identities=12%  Similarity=0.054  Sum_probs=61.6

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc-CC---------------CEEEeCCCCcc
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL-GA---------------DNIVKVSTNLQ  152 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~-g~---------------~~~~~~~~~~~  152 (216)
                      ....+.++.+||..|+|. |..+..+++. |+ .|+++|.+++-++.+++. ..               ..+..+..+..
T Consensus        16 ~~l~~~~~~~vLD~GCG~-G~~~~~la~~-g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~   92 (203)
T 1pjz_A           16 SSLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF   92 (203)
T ss_dssp             HHHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred             HhcccCCCCEEEEeCCCC-cHhHHHHHHC-CC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccc
Confidence            444567889999999875 6777777775 88 599999999988877542 21               11100000111


Q ss_pred             cHHHHHHHHHHHcCCCccEEEEcCC-----C---HHHHHHHHHHhhcCCEEEEe
Q 048013          153 DIAEEVEKIQKAMGTGIDVSFDCAG-----F---NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       153 ~~~~~~~~~~~~~~~~~d~vi~~~g-----~---~~~~~~~~~~l~~~G~~v~~  198 (216)
                      +..  ..     ....||+|++...     .   ...++.+.+.|+|+|+++++
T Consensus        93 ~l~--~~-----~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~  139 (203)
T 1pjz_A           93 ALT--AR-----DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI  139 (203)
T ss_dssp             SST--HH-----HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             cCC--cc-----cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            110  00     0136999997322     1   12567888999999994433

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=97.17  E-value=0.0014  Score=50.19  Aligned_cols=101  Identities=22%  Similarity=0.270  Sum_probs=68.0

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCC-EEEeCCCCcccHHHHHHHHH
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGAD-NIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~  162 (216)
                      ++...++++.+||.+|+|. |..+..+++..+. .++++|.+++..+.+++    .+.. .+.....+..+       +.
T Consensus        29 ~~~~~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-------~~   99 (256)
T 1nkv_A           29 GRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG-------YV   99 (256)
T ss_dssp             HHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT-------CC
T ss_pred             HHhcCCCCCCEEEEECCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh-------CC
Confidence            3556788999999999876 7788888888887 59999999987776643    3432 12111111111       10


Q ss_pred             HHcCCCccEEEEcC------CCHHHHHHHHHHhhcCCEEEEec
Q 048013          163 KAMGTGIDVSFDCA------GFNKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       163 ~~~~~~~d~vi~~~------g~~~~~~~~~~~l~~~G~~v~~g  199 (216)
                        ....||+|+..-      .....++.+.+.|+|+|++++.-
T Consensus       100 --~~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          100 --ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             --CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             --cCCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence              135699998622      12456788889999999998753

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.17  E-value=0.0048  Score=49.08  Aligned_cols=87  Identities=17%  Similarity=0.208  Sum_probs=59.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      .+|.|+|+|.+|...+..+...|.+ |++.++++++.+.+.+.|...   .    .+..+.+        ...|+||.++
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~-V~~~~~~~~~~~~~~~~g~~~---~----~~~~~~~--------~~~DvVi~av   94 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHT-VTVWNRTAEKCDLFIQEGARL---G----RTPAEVV--------STCDITFACV   94 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCC-EEEECSSGGGGHHHHHTTCEE---C----SCHHHHH--------HHCSEEEECC
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHHHHcCCEE---c----CCHHHHH--------hcCCEEEEeC
Confidence            5799999999999999988888986 899999988887777666431   1    1222211        1478899888


Q ss_pred             CCHHHHHHHHH-------HhhcCCEEEEec
Q 048013          177 GFNKTMSTALS-------ATRAGGKVCLVG  199 (216)
Q Consensus       177 g~~~~~~~~~~-------~l~~~G~~v~~g  199 (216)
                      ..+...+..+.       .+.++..++.++
T Consensus        95 ~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s  124 (316)
T 2uyy_A           95 SDPKAAKDLVLGPSGVLQGIRPGKCYVDMS  124 (316)
T ss_dssp             SSHHHHHHHHHSTTCGGGGCCTTCEEEECS
T ss_pred             CCHHHHHHHHcCchhHhhcCCCCCEEEECC
Confidence            86455555443       344555666554

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=97.17  E-value=0.0031  Score=53.02  Aligned_cols=100  Identities=20%  Similarity=0.252  Sum_probs=64.8

Q ss_pred             HcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHH----HcCCCEEEeCCCCcccHHHHHHHHHHH
Q 048013           90 RANIGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAK----KLGADNIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        90 ~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      ...++++++||-.|+|+ |..++.++..++ ...|+++|.++++.+.++    ++|...+....   .|..+....    
T Consensus       100 ~L~~~~g~~VLDlcaGp-Ggkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~---~Da~~l~~~----  171 (456)
T 3m4x_A          100 AAAAKPGEKVLDLCAAP-GGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTN---HAPAELVPH----  171 (456)
T ss_dssp             HHCCCTTCEEEESSCTT-CHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEEC---CCHHHHHHH----
T ss_pred             HcCCCCCCEEEEECCCc-CHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEe---CCHHHhhhh----
Confidence            34578999999998764 555666666543 236999999998877663    46776544322   232221111    


Q ss_pred             cCCCccEEEE---cCCCH-------------------------HHHHHHHHHhhcCCEEEE
Q 048013          165 MGTGIDVSFD---CAGFN-------------------------KTMSTALSATRAGGKVCL  197 (216)
Q Consensus       165 ~~~~~d~vi~---~~g~~-------------------------~~~~~~~~~l~~~G~~v~  197 (216)
                      ....||.|+-   |+|.-                         ..+..+++.|+|+|+++.
T Consensus       172 ~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvY  232 (456)
T 3m4x_A          172 FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIY  232 (456)
T ss_dssp             HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            2457999886   33320                         346778889999999885

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.16  E-value=0.0007  Score=50.00  Aligned_cols=95  Identities=23%  Similarity=0.280  Sum_probs=59.0

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEc
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC  175 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  175 (216)
                      .+|+|+|+ |.+|..+++.+...|. .|++++++.++.+....-+. ..+..+-  .+. +.+.+..    .++|++|.+
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~~~-~~~~~D~--~~~-~~~~~~~----~~~d~vi~~   74 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPA-HVVVGDV--LQA-ADVDKTV----AGQDAVIVL   74 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCS-EEEESCT--TSH-HHHHHHH----TTCSEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeChhhcccccCCce-EEEEecC--CCH-HHHHHHH----cCCCEEEEC
Confidence            68999996 9999999999998998 58999998765432111122 2222221  121 2233332    268999999


Q ss_pred             CCCHH----------HHHHHHHHhhc--CCEEEEecc
Q 048013          176 AGFNK----------TMSTALSATRA--GGKVCLVGM  200 (216)
Q Consensus       176 ~g~~~----------~~~~~~~~l~~--~G~~v~~g~  200 (216)
                      ++...          ....+++.+..  -++++.++.
T Consensus        75 a~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss  111 (206)
T 1hdo_A           75 LGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTS  111 (206)
T ss_dssp             CCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             ccCCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEee
Confidence            98521          23455555543  358888774

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.15  E-value=0.0041  Score=49.65  Aligned_cols=107  Identities=11%  Similarity=0.081  Sum_probs=62.4

Q ss_pred             HHHHHcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC---hHHHHHH-HHc----CCC-EEEeCCCCcccHH
Q 048013           86 HACRRANI-GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD---DYRLSVA-KKL----GAD-NIVKVSTNLQDIA  155 (216)
Q Consensus        86 ~~l~~~~~-~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~---~~~~~~~-~~~----g~~-~~~~~~~~~~~~~  155 (216)
                      .+++.... ..+++++|+|+|++|.+++..+...|++.|+++.|+   .++.+.+ +++    +.. .....    .+..
T Consensus       137 ~~L~~~~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~----~~l~  212 (312)
T 3t4e_A          137 RAIKESGFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDL----ADQH  212 (312)
T ss_dssp             HHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEET----TCHH
T ss_pred             HHHHhcCCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEech----Hhhh
Confidence            34443332 357899999999999999999999999779999999   5554433 333    221 12221    1110


Q ss_pred             HHHHHHHHHcCCCccEEEEcCCCHH--HHHH----HHHHhhcCCEEEEeccC
Q 048013          156 EEVEKIQKAMGTGIDVSFDCAGFNK--TMST----ALSATRAGGKVCLVGMG  201 (216)
Q Consensus       156 ~~~~~~~~~~~~~~d~vi~~~g~~~--~~~~----~~~~l~~~G~~v~~g~~  201 (216)
                       .+.+..    ..+|+||++++.--  ....    -...++++..++.+-..
T Consensus       213 -~~~~~l----~~~DiIINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~  259 (312)
T 3t4e_A          213 -AFTEAL----ASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECVYN  259 (312)
T ss_dssp             -HHHHHH----HHCSEEEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECCCS
T ss_pred             -hhHhhc----cCceEEEECCcCCCCCCCCCcccCCHHHcCCCCEEEEeccC
Confidence             011111    24899999988511  0000    12345666666666543

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.15  E-value=0.0013  Score=53.41  Aligned_cols=90  Identities=19%  Similarity=0.237  Sum_probs=61.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           94 GPETNVLIMGSGPIGLVTMLAAR-AFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~-~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      -.+++|.|+|.|.+|..+++.++ .+|. +|++.+++.++.+.+.++|....       .+..+.+.        ..|+|
T Consensus       161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell~--------~aDvV  224 (348)
T 2w2k_A          161 PRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPADAETEKALGAERV-------DSLEELAR--------RSDCV  224 (348)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHHHHHHTCEEC-------SSHHHHHH--------HCSEE
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCCcchhhHhhcCcEEe-------CCHHHHhc--------cCCEE
Confidence            45789999999999999999999 9999 49999988766655555665321       12222111        37888


Q ss_pred             EEcCCCHH----HH-HHHHHHhhcCCEEEEec
Q 048013          173 FDCAGFNK----TM-STALSATRAGGKVCLVG  199 (216)
Q Consensus       173 i~~~g~~~----~~-~~~~~~l~~~G~~v~~g  199 (216)
                      +.++....    .+ ...+..|+++..++.++
T Consensus       225 il~vp~~~~t~~li~~~~l~~mk~gailin~s  256 (348)
T 2w2k_A          225 SVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTA  256 (348)
T ss_dssp             EECCCCSGGGTTCBCHHHHHHSCTTEEEEECS
T ss_pred             EEeCCCChHHHHHhhHHHHhcCCCCCEEEECC
Confidence            88877522    11 34566777777777665

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=97.15  E-value=0.0022  Score=53.22  Aligned_cols=87  Identities=22%  Similarity=0.206  Sum_probs=56.5

Q ss_pred             cCC-CCCCEEEEEcC-CHHHHHHHHHHHH-cCCCeEEEEcCChHH----------------HHHHHHcCCCEE-EeCC-C
Q 048013           91 ANI-GPETNVLIMGS-GPIGLVTMLAARA-FGAPRIVIVDVDDYR----------------LSVAKKLGADNI-VKVS-T  149 (216)
Q Consensus        91 ~~~-~~~~~vlv~Ga-g~~G~~~i~~a~~-~g~~~vv~~~~~~~~----------------~~~~~~~g~~~~-~~~~-~  149 (216)
                      ..+ +.++++||+|+ +++|++++..+.. .|++ |++++++.+.                .+.+++.|.... +..+ .
T Consensus        55 ~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA~-Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvt  133 (422)
T 3s8m_A           55 GVRNDGPKKVLVIGASSGYGLASRITAAFGFGAD-TLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAF  133 (422)
T ss_dssp             CCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCCE-EEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred             cccccCCCEEEEECCChHHHHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCC
Confidence            344 46788999996 8999999888888 9995 8887766432                134556665532 2222 2


Q ss_pred             CcccHHHHHHHHHHHcCCCccEEEEcCCC
Q 048013          150 NLQDIAEEVEKIQKAMGTGIDVSFDCAGF  178 (216)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~d~vi~~~g~  178 (216)
                      +.+...+.+.++.+..++++|++++++|.
T Consensus       134 d~~~v~~~v~~i~~~~~G~IDiLVNNAG~  162 (422)
T 3s8m_A          134 SDAARAQVIELIKTEMGGQVDLVVYSLAS  162 (422)
T ss_dssp             SHHHHHHHHHHHHHHSCSCEEEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCCEEEEcCcc
Confidence            23334445555554442579999999875

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=97.15  E-value=0.0076  Score=48.36  Aligned_cols=98  Identities=18%  Similarity=0.224  Sum_probs=59.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh----HHHHHHHHc------CCCEEEeCCCCcccHHHHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDD----YRLSVAKKL------GADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~----~~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      .+++|||+|+ |.+|..+++.+...|.+ |++++++.    +..+.++..      ..-..+..+-.  +. +.+.++  
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--d~-~~~~~~--   97 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQV-VIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIR--DL-TTCEQV--   97 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTT--CH-HHHHHH--
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCC--CH-HHHHHH--
Confidence            4579999996 99999999999989984 88888753    333333332      11122222221  21 223333  


Q ss_pred             HcCCCccEEEEcCCCH-----------------HHHHHHHHHhhcCC--EEEEecc
Q 048013          164 AMGTGIDVSFDCAGFN-----------------KTMSTALSATRAGG--KVCLVGM  200 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~~-----------------~~~~~~~~~l~~~G--~~v~~g~  200 (216)
                        -.++|+||.+++..                 .....+++.++..+  +++.++.
T Consensus        98 --~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS  151 (351)
T 3ruf_A           98 --MKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAAS  151 (351)
T ss_dssp             --TTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             --hcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence              23799999999841                 11233555555544  7887764

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=97.14  E-value=0.0056  Score=48.65  Aligned_cols=100  Identities=20%  Similarity=0.133  Sum_probs=64.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcC--------CCEEEeCCCCcccHHHHHHHHHHH
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLG--------ADNIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      ..++++||++|+|. |..+..+++..+..++++++.+++..+.+++.-        ...+..+   ..|..+.+.+   .
T Consensus        93 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~---~~D~~~~~~~---~  165 (304)
T 3bwc_A           93 HPKPERVLIIGGGD-GGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVR---VGDGLAFVRQ---T  165 (304)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEE---ESCHHHHHHS---S
T ss_pred             CCCCCeEEEEcCCC-CHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEE---ECcHHHHHHh---c
Confidence            46778999999764 666677777655457999999998888776532        1111111   1233222211   0


Q ss_pred             cCCCccEEEEcCCC----------HHHHHHHHHHhhcCCEEEEec
Q 048013          165 MGTGIDVSFDCAGF----------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       165 ~~~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ....||+|+.....          ...++.+.+.|+|+|++++..
T Consensus       166 ~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  210 (304)
T 3bwc_A          166 PDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG  210 (304)
T ss_dssp             CTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            24579999875432          356788899999999998764

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.13  E-value=0.0047  Score=49.33  Aligned_cols=101  Identities=23%  Similarity=0.306  Sum_probs=66.1

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ....++++++||-+|+|+ |..++.+++.++ ...|+++|.++++.+.+++    +|...+.....+..++.        
T Consensus       112 ~~l~~~~g~~VLDlg~G~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~--------  182 (315)
T 1ixk_A          112 VALDPKPGEIVADMAAAP-GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG--------  182 (315)
T ss_dssp             HHHCCCTTCEEEECCSSC-SHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG--------
T ss_pred             HHhCCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcc--------
Confidence            445678999999998765 666777777753 2369999999988776643    46644333222211110        


Q ss_pred             HcCCCccEEEE---cCCC-------------------------HHHHHHHHHHhhcCCEEEEe
Q 048013          164 AMGTGIDVSFD---CAGF-------------------------NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       164 ~~~~~~d~vi~---~~g~-------------------------~~~~~~~~~~l~~~G~~v~~  198 (216)
                      .....||.|+-   |+|.                         ...++.+.+.|+|+|+++..
T Consensus       183 ~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~s  245 (315)
T 1ixk_A          183 ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYS  245 (315)
T ss_dssp             GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            02346999886   2221                         25567888999999999864

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=97.13  E-value=0.00098  Score=53.82  Aligned_cols=89  Identities=17%  Similarity=0.144  Sum_probs=65.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      -.+++|.|+|.|.+|..+++.++.+|++ |++.+++..+ +.+.+.|...  .      +    +.++.    ...|+|+
T Consensus       163 l~g~tvgIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~~~-~~~~~~g~~~--~------~----l~ell----~~aDvV~  224 (335)
T 2g76_A          163 LNGKTLGILGLGRIGREVATRMQSFGMK-TIGYDPIISP-EVSASFGVQQ--L------P----LEEIW----PLCDFIT  224 (335)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECSSSCH-HHHHHTTCEE--C------C----HHHHG----GGCSEEE
T ss_pred             CCcCEEEEEeECHHHHHHHHHHHHCCCE-EEEECCCcch-hhhhhcCcee--C------C----HHHHH----hcCCEEE
Confidence            3578999999999999999999999995 9999987665 3556677642  1      1    22221    2589999


Q ss_pred             EcCCCHH----HH-HHHHHHhhcCCEEEEecc
Q 048013          174 DCAGFNK----TM-STALSATRAGGKVCLVGM  200 (216)
Q Consensus       174 ~~~g~~~----~~-~~~~~~l~~~G~~v~~g~  200 (216)
                      .+++...    .+ ...+..|++++.++.+|-
T Consensus       225 l~~P~t~~t~~li~~~~l~~mk~gailIN~ar  256 (335)
T 2g76_A          225 VHTPLLPSTTGLLNDNTFAQCKKGVRVVNCAR  256 (335)
T ss_dssp             ECCCCCTTTTTSBCHHHHTTSCTTEEEEECSC
T ss_pred             EecCCCHHHHHhhCHHHHhhCCCCcEEEECCC
Confidence            9888632    12 457788899999998874

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.13  E-value=0.00077  Score=51.29  Aligned_cols=99  Identities=18%  Similarity=0.260  Sum_probs=58.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCC--CeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGA--PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~--~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      .++++||+|+ |.+|..+++.+...|+  + |++++++.++.+....-+.. .+..+-.+.+   .+.++    -.++|+
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~-V~~~~r~~~~~~~~~~~~~~-~~~~D~~d~~---~~~~~----~~~~d~   87 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSK-VTLIGRRKLTFDEEAYKNVN-QEVVDFEKLD---DYASA----FQGHDV   87 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSE-EEEEESSCCCCCSGGGGGCE-EEECCGGGGG---GGGGG----GSSCSE
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCE-EEEEEcCCCCccccccCCce-EEecCcCCHH---HHHHH----hcCCCE
Confidence            3578999996 9999999999988898  5 88888876543221111221 2221111111   12221    137999


Q ss_pred             EEEcCCCHH--------------HHHHHHHHhhcC--CEEEEeccCC
Q 048013          172 SFDCAGFNK--------------TMSTALSATRAG--GKVCLVGMGH  202 (216)
Q Consensus       172 vi~~~g~~~--------------~~~~~~~~l~~~--G~~v~~g~~~  202 (216)
                      +|+++|...              ....+++.+...  ++++.++...
T Consensus        88 vi~~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~  134 (242)
T 2bka_A           88 GFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKG  134 (242)
T ss_dssp             EEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             EEECCCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCc
Confidence            999998521              123444555443  5898887543

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=97.12  E-value=0.0038  Score=47.65  Aligned_cols=103  Identities=17%  Similarity=0.198  Sum_probs=67.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHHH----cCCCE-EEeCCCCcccHHHHHHHHHHHc-
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAKK----LGADN-IVKVSTNLQDIAEEVEKIQKAM-  165 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~~~~~~~~~-  165 (216)
                      ..++++||.+|+|. |..++.+++.+. -.+++.++.+++..+.+++    .|... +..+   ..+..+.+..+.... 
T Consensus        68 ~~~~~~VLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~---~gda~~~l~~l~~~~~  143 (237)
T 3c3y_A           68 LVNAKKTIEVGVFT-GYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFI---ESDAMLALDNLLQGQE  143 (237)
T ss_dssp             HTTCCEEEEECCTT-SHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE---ESCHHHHHHHHHHSTT
T ss_pred             hhCCCEEEEeCCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE---EcCHHHHHHHHHhccC
Confidence            45678999999864 677778888763 2369999999988776643    45532 2211   134444443332111 


Q ss_pred             -CCCccEEEEcCCC---HHHHHHHHHHhhcCCEEEEec
Q 048013          166 -GTGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       166 -~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~g  199 (216)
                       ...||+||-....   ...++.+.+.|+|+|.++.-.
T Consensus       144 ~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          144 SEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             CTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEec
Confidence             3579999865443   356788899999999998653

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.12  E-value=0.0059  Score=47.94  Aligned_cols=41  Identities=29%  Similarity=0.464  Sum_probs=35.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK  138 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~  138 (216)
                      ++|.|+|+|.+|..+++.+...|++ |++.++++++.+.+.+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~   45 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFA-VTAYDINTDALDAAKK   45 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHH
Confidence            5799999999999999999999994 9999999988766543

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=97.12  E-value=0.0014  Score=48.48  Aligned_cols=62  Identities=19%  Similarity=0.359  Sum_probs=41.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      ++||+|+ |++|..+++.+. .|++ |++++++.+          ....++. +.+...+.+.+    . .++|++|.++
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~~-V~~~~r~~~----------~~~~D~~-~~~~~~~~~~~----~-~~~d~vi~~a   66 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKAE-VITAGRHSG----------DVTVDIT-NIDSIKKMYEQ----V-GKVDAIVSAT   66 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTSE-EEEEESSSS----------SEECCTT-CHHHHHHHHHH----H-CCEEEEEECC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCCe-EEEEecCcc----------ceeeecC-CHHHHHHHHHH----h-CCCCEEEECC
Confidence            7999996 999999999888 8985 888888754          1112221 11222222222    2 3699999998


Q ss_pred             C
Q 048013          177 G  177 (216)
Q Consensus       177 g  177 (216)
                      |
T Consensus        67 g   67 (202)
T 3d7l_A           67 G   67 (202)
T ss_dssp             C
T ss_pred             C
Confidence            7

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=97.12  E-value=0.0059  Score=47.18  Aligned_cols=82  Identities=17%  Similarity=0.225  Sum_probs=50.5

Q ss_pred             CCCEEEEEc-C--CHHHHHHHHHHHHcCCCeEEEEcCChHH-----HHHH-HHcCCCEEEe-CC-CCcccHHHHHHHHHH
Q 048013           95 PETNVLIMG-S--GPIGLVTMLAARAFGAPRIVIVDVDDYR-----LSVA-KKLGADNIVK-VS-TNLQDIAEEVEKIQK  163 (216)
Q Consensus        95 ~~~~vlv~G-a--g~~G~~~i~~a~~~g~~~vv~~~~~~~~-----~~~~-~~~g~~~~~~-~~-~~~~~~~~~~~~~~~  163 (216)
                      .++++||+| +  +++|..+++.+...|++ |++++++.++     .+.+ +..+....+. .+ .+.++..+.+.++.+
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~~-v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~   97 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGAA-VAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVA   97 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSCE-EEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCCe-EEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHHHH
Confidence            578999998 4  59999999999999995 7777666432     2222 2334432211 11 122333444455443


Q ss_pred             HcCCCccEEEEcCCC
Q 048013          164 AMGTGIDVSFDCAGF  178 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~  178 (216)
                      .. .++|++|+++|.
T Consensus        98 ~~-g~id~li~nAg~  111 (267)
T 3gdg_A           98 DF-GQIDAFIANAGA  111 (267)
T ss_dssp             HT-SCCSEEEECCCC
T ss_pred             Hc-CCCCEEEECCCc
Confidence            33 479999999983

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.12  E-value=0.0017  Score=51.12  Aligned_cols=100  Identities=11%  Similarity=0.104  Sum_probs=64.9

Q ss_pred             HHHHHcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           86 HACRRANI-GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        86 ~~l~~~~~-~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      .+++..++ ..+++++|+|+|++|.+++..+...|+++|+++.|+.++.+.+ +++.   ...       +    .++.+
T Consensus       111 ~~L~~~~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~---~~~-------~----~~l~~  176 (282)
T 3fbt_A          111 KMLSKFRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFK---VIS-------Y----DELSN  176 (282)
T ss_dssp             HHHHHTTCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSE---EEE-------H----HHHTT
T ss_pred             HHHHHcCCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcC---ccc-------H----HHHHh
Confidence            44544333 4688999999999999999999999997799999998876544 2221   111       1    12211


Q ss_pred             HcCCCccEEEEcCCCH---H--HHHHHHHHhhcCCEEEEeccCC
Q 048013          164 AMGTGIDVSFDCAGFN---K--TMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~~---~--~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                       .  .+|+||++++.-   .  ........++++..++.+-..+
T Consensus       177 -l--~~DivInaTp~Gm~~~~~~~pi~~~~l~~~~~v~DlvY~P  217 (282)
T 3fbt_A          177 -L--KGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNP  217 (282)
T ss_dssp             -C--CCSEEEECSSTTSTTSTTCCSSCHHHHTTCSEEEESCCSS
T ss_pred             -c--cCCEEEECCccCccCCCccCCCCHHHcCCCCEEEEEeeCC
Confidence             1  689999998641   1  0112345577777777776543

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=97.12  E-value=0.003  Score=50.98  Aligned_cols=100  Identities=23%  Similarity=0.272  Sum_probs=65.7

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcC------C--CEEEeCCCCcccHHHHHHHHHH
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLG------A--DNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g------~--~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ...++++||++|+|. |..+..+++..+..+|++++.+++..+.+++.-      .  ..+..+   ..|..+.+..   
T Consensus       117 ~~~~~~~VLdIG~G~-G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~---~~D~~~~l~~---  189 (334)
T 1xj5_A          117 SIPNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLV---IGDGVAFLKN---  189 (334)
T ss_dssp             TSSCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEE---ESCHHHHHHT---
T ss_pred             hCCCCCEEEEECCCc-cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEE---ECCHHHHHHh---
Confidence            345678999999764 666777777655447999999998888776521      1  112111   1233332221   


Q ss_pred             HcCCCccEEEEcCC----------CHHHHHHHHHHhhcCCEEEEe
Q 048013          164 AMGTGIDVSFDCAG----------FNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       164 ~~~~~~d~vi~~~g----------~~~~~~~~~~~l~~~G~~v~~  198 (216)
                      .....||+|+....          ....++.+.+.|+|+|++++-
T Consensus       190 ~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          190 AAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             SCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            12357999986443          246778899999999999975

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=97.12  E-value=0.0022  Score=49.38  Aligned_cols=82  Identities=18%  Similarity=0.265  Sum_probs=50.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHH-HHHH----HcCCCE-EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRL-SVAK----KLGADN-IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~-~~~~----~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++.++. +.++    +.+... .+..+- +.+++.+.++++.+. .
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-~   90 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGAN-VAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDAD-L   90 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHh-c
Confidence            4678999996 99999999999989985 88888854332 2222    234332 222222 222333444444332 3


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      .++|++|.++|.
T Consensus        91 ~~id~li~~Ag~  102 (265)
T 1h5q_A           91 GPISGLIANAGV  102 (265)
T ss_dssp             CSEEEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999884

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=97.12  E-value=0.00039  Score=54.94  Aligned_cols=44  Identities=27%  Similarity=0.391  Sum_probs=36.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK  138 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~  138 (216)
                      .++++||-+|+|. |..++.+++..+...|+++|.++.-++.+++
T Consensus        45 ~~~~~VLDiGCG~-G~~~~~la~~~~~~~v~gvDis~~~i~~A~~   88 (292)
T 3g07_A           45 FRGRDVLDLGCNV-GHLTLSIACKWGPSRMVGLDIDSRLIHSARQ   88 (292)
T ss_dssp             TTTSEEEEESCTT-CHHHHHHHHHTCCSEEEEEESCHHHHHHHHH
T ss_pred             cCCCcEEEeCCCC-CHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            4678999999875 7888889998765579999999988877765

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=97.11  E-value=0.00062  Score=54.74  Aligned_cols=34  Identities=18%  Similarity=0.064  Sum_probs=27.2

Q ss_pred             CCEEEEEcCC---HHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           96 ETNVLIMGSG---PIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        96 ~~~vlv~Gag---~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      ++++||+|+|   ++|.++++.+...|++ |++..+++
T Consensus         2 ~k~~lITGas~~~GIG~aiA~~la~~G~~-Vv~~~~~~   38 (329)
T 3lt0_A            2 EDICFIAGIGDTNGYGWGIAKELSKRNVK-IIFGIWPP   38 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEECHH
T ss_pred             CcEEEEECCCCCCchHHHHHHHHHHCCCE-EEEEecCc
Confidence            6789999963   8999999999999995 77665443

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.11  E-value=0.0053  Score=51.81  Aligned_cols=95  Identities=18%  Similarity=0.175  Sum_probs=58.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHHHH-cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVAKK-LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .+++|+|+|+|++|..++..+... +. .|++++++.++.+.+.+ .+.. .+..+-  .+.. .+.+..    .++|+|
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~-~V~v~~R~~~ka~~la~~~~~~-~~~~D~--~d~~-~l~~~l----~~~DvV   92 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDI-NVTVACRTLANAQALAKPSGSK-AISLDV--TDDS-ALDKVL----ADNDVV   92 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHGGGTCE-EEECCT--TCHH-HHHHHH----HTSSEE
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHhcCCc-EEEEec--CCHH-HHHHHH----cCCCEE
Confidence            356899999999999999888877 66 58999999888665543 3332 222221  1221 233322    269999


Q ss_pred             EEcCCCHHHHHHHHHHhhcCCEEEEe
Q 048013          173 FDCAGFNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       173 i~~~g~~~~~~~~~~~l~~~G~~v~~  198 (216)
                      |++++..........+++++-.++..
T Consensus        93 In~tp~~~~~~v~~a~l~~g~~vvd~  118 (467)
T 2axq_A           93 ISLIPYTFHPNVVKSAIRTKTDVVTS  118 (467)
T ss_dssp             EECSCGGGHHHHHHHHHHHTCEEEEC
T ss_pred             EECCchhhhHHHHHHHHhcCCEEEEe
Confidence            99999732222233345555555544

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.11  E-value=0.0054  Score=47.40  Aligned_cols=34  Identities=32%  Similarity=0.522  Sum_probs=30.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      +.+|+|+|+|++|..+++.+...|..++.++|.+
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4789999999999999999999999888888654

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=97.11  E-value=0.0021  Score=49.09  Aligned_cols=93  Identities=22%  Similarity=0.233  Sum_probs=56.7

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEc
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC  175 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  175 (216)
                      +++||+|+ |.+|..+++.+...|++ |++++++.++.+.      .    +..+-.+ .+.++++.+....++|++|.+
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~------~----~~~D~~~-~~~~~~~~~~~~~~~d~vi~~   69 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHT-VIGIDRGQADIEA------D----LSTPGGR-ETAVAAVLDRCGGVLDGLVCC   69 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSSSSEEC------C----TTSHHHH-HHHHHHHHHHHTTCCSEEEEC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCE-EEEEeCChhHccc------c----ccCCccc-HHHHHHHHHHcCCCccEEEEC
Confidence            46899996 99999999998889985 8888887654211      0    1111011 122333322222479999999


Q ss_pred             CCCHH------------------HHHHHHHHhhcC--CEEEEeccC
Q 048013          176 AGFNK------------------TMSTALSATRAG--GKVCLVGMG  201 (216)
Q Consensus       176 ~g~~~------------------~~~~~~~~l~~~--G~~v~~g~~  201 (216)
                      +|...                  .++.+.+.+...  ++++.++..
T Consensus        70 Ag~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  115 (255)
T 2dkn_A           70 AGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSI  115 (255)
T ss_dssp             CCCCTTSSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCG
T ss_pred             CCCCCcchhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEecc
Confidence            87411                  224444455443  899988753

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=97.11  E-value=0.0023  Score=51.50  Aligned_cols=88  Identities=15%  Similarity=0.161  Sum_probs=60.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .+.+|.|+|.|.+|..+++.++.+|.+ |++.+++.++.+.+.+++....        +..+.+.        ..|+|+.
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~--------~l~e~l~--------~aDvVi~  216 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGVQ-RFLYTGRQPRPEEAAEFQAEFV--------STPELAA--------QSDFIVV  216 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCC-EEEEESSSCCHHHHHTTTCEEC--------CHHHHHH--------HCSEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCCCcchhHHHhcCceeC--------CHHHHHh--------hCCEEEE
Confidence            467899999999999999999999996 8999987765555555554311        2211111        4788888


Q ss_pred             cCCCHH----HH-HHHHHHhhcCCEEEEec
Q 048013          175 CAGFNK----TM-STALSATRAGGKVCLVG  199 (216)
Q Consensus       175 ~~g~~~----~~-~~~~~~l~~~G~~v~~g  199 (216)
                      ++....    .+ ...+..|+++..++.++
T Consensus       217 ~vp~~~~t~~~i~~~~~~~mk~gailIn~s  246 (330)
T 2gcg_A          217 ACSLTPATEGLCNKDFFQKMKETAVFINIS  246 (330)
T ss_dssp             CCCCCTTTTTCBSHHHHHHSCTTCEEEECS
T ss_pred             eCCCChHHHHhhCHHHHhcCCCCcEEEECC
Confidence            887521    12 34567778887777665

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=97.11  E-value=0.0029  Score=50.55  Aligned_cols=83  Identities=23%  Similarity=0.342  Sum_probs=52.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC----------hHHHH----HHHHcCCCEEEe-CCC-CcccHHH
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVD----------DYRLS----VAKKLGADNIVK-VST-NLQDIAE  156 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~----------~~~~~----~~~~~g~~~~~~-~~~-~~~~~~~  156 (216)
                      -.++++||+|+ +++|.++++.+...|++ |++++++          .++.+    .+++.+...... .+- +.++..+
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~~-Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~  103 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGAR-VVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAG  103 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHH
Confidence            46789999986 89999999999999995 8888876          33332    233344433221 111 2223333


Q ss_pred             HHHHHHHHcCCCccEEEEcCCC
Q 048013          157 EVEKIQKAMGTGIDVSFDCAGF  178 (216)
Q Consensus       157 ~~~~~~~~~~~~~d~vi~~~g~  178 (216)
                      .+.++.+.. +++|++|+++|.
T Consensus       104 ~~~~~~~~~-g~iD~lv~nAg~  124 (322)
T 3qlj_A          104 LIQTAVETF-GGLDVLVNNAGI  124 (322)
T ss_dssp             HHHHHHHHH-SCCCEEECCCCC
T ss_pred             HHHHHHHHc-CCCCEEEECCCC
Confidence            444444333 379999999984

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=97.09  E-value=0.0045  Score=46.23  Aligned_cols=99  Identities=17%  Similarity=0.114  Sum_probs=64.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHcCCCc
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      .++.+||-+|+|. |..++.+++...-.+++++|.+++..+.+++    .+...+..+..+..++    .+.  .....+
T Consensus        40 ~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~----~~~--~~~~~~  112 (214)
T 1yzh_A           40 NDNPIHVEVGSGK-GAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDL----TDY--FEDGEI  112 (214)
T ss_dssp             SCCCEEEEESCTT-SHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCG----GGT--SCTTCC
T ss_pred             CCCCeEEEEccCc-CHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHH----Hhh--cCCCCC
Confidence            4678899999874 7777888887633369999999988776643    3444332221211111    100  123469


Q ss_pred             cEEEEcCCC--------------HHHHHHHHHHhhcCCEEEEec
Q 048013          170 DVSFDCAGF--------------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       170 d~vi~~~g~--------------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      |.|+-....              ...+..+.+.|+|+|++++..
T Consensus       113 D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  156 (214)
T 1yzh_A          113 DRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  156 (214)
T ss_dssp             SEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence            998877664              357788999999999988753

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=97.09  E-value=0.0046  Score=48.55  Aligned_cols=98  Identities=16%  Similarity=0.245  Sum_probs=65.8

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCC-EEEeCCCCcccHHHHHHHHHHHcC
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGAD-NIVKVSTNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      .+.++.+||.+|+|. |..+..+++..|. .++++|.++..++.+++    .+.. .+.....+..+       + ....
T Consensus        79 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-------~-~~~~  148 (297)
T 2o57_A           79 VLQRQAKGLDLGAGY-GGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE-------I-PCED  148 (297)
T ss_dssp             CCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS-------C-SSCT
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc-------C-CCCC
Confidence            678999999999874 7778888887787 59999999887766643    3332 11111111111       0 0123


Q ss_pred             CCccEEEEcCCC------HHHHHHHHHHhhcCCEEEEec
Q 048013          167 TGIDVSFDCAGF------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       167 ~~~d~vi~~~g~------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ..||+|+..-.-      ...++.+.+.|+|+|++++..
T Consensus       149 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  187 (297)
T 2o57_A          149 NSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITD  187 (297)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            569999875331      356788999999999998775

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=97.08  E-value=0.0035  Score=50.26  Aligned_cols=98  Identities=17%  Similarity=0.205  Sum_probs=64.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc-CC-------CEEEeCCCCcccHHHHHHHHHHHc
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL-GA-------DNIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~-g~-------~~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      .++++||++|+|. |..+..+++..+..+++++|.+++..+.+++. ..       ..+..+   ..|..+.+..    .
T Consensus       115 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~---~~D~~~~l~~----~  186 (321)
T 2pt6_A          115 KEPKNVLVVGGGD-GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVF---IEDASKFLEN----V  186 (321)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEE---ESCHHHHHHH----C
T ss_pred             CCCCEEEEEcCCc-cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEE---EccHHHHHhh----c
Confidence            4568999999764 66666777765545799999999988888663 21       111111   1233332222    3


Q ss_pred             CCCccEEEEcCCC----------HHHHHHHHHHhhcCCEEEEec
Q 048013          166 GTGIDVSFDCAGF----------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       166 ~~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ...||+|+.....          ...++.+.+.|+|+|.+++-.
T Consensus       187 ~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  230 (321)
T 2pt6_A          187 TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  230 (321)
T ss_dssp             CSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            4579999854421          467788999999999998753

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=97.08  E-value=0.0015  Score=52.41  Aligned_cols=89  Identities=16%  Similarity=0.073  Sum_probs=62.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC-ChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDV-DDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      .+++|.|+|.|.+|..+++.++.+|+ +|++.++ +.++ +.+.++|...   .    .+..+.+        ...|+|+
T Consensus       145 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~---~----~~l~ell--------~~aDvVi  207 (320)
T 1gdh_A          145 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASS-SDEASYQATF---H----DSLDSLL--------SVSQFFS  207 (320)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCH-HHHHHHTCEE---C----SSHHHHH--------HHCSEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcCh-hhhhhcCcEE---c----CCHHHHH--------hhCCEEE
Confidence            57899999999999999999999998 4999998 7665 3455666631   1    1222222        1478999


Q ss_pred             EcCCCHH----HH-HHHHHHhhcCCEEEEecc
Q 048013          174 DCAGFNK----TM-STALSATRAGGKVCLVGM  200 (216)
Q Consensus       174 ~~~g~~~----~~-~~~~~~l~~~G~~v~~g~  200 (216)
                      .++....    .+ ...+..|++++.++.+|-
T Consensus       208 l~~p~~~~t~~~i~~~~l~~mk~gailIn~ar  239 (320)
T 1gdh_A          208 LNAPSTPETRYFFNKATIKSLPQGAIVVNTAR  239 (320)
T ss_dssp             ECCCCCTTTTTCBSHHHHTTSCTTEEEEECSC
T ss_pred             EeccCchHHHhhcCHHHHhhCCCCcEEEECCC
Confidence            9887521    12 346677888888888874

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=97.08  E-value=0.0043  Score=48.06  Aligned_cols=83  Identities=18%  Similarity=0.087  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      .++++||+|+ |++|..+++.+...|++.++...++.++.+..    ++.+... .+..+- +.++..+.+.++.+.. .
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~-g  103 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQH-G  103 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-C
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHh-C
Confidence            4678999996 89999999999999996334456666554332    2334332 222222 2233334444443333 4


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++|+++|.
T Consensus       104 ~id~li~nAg~  114 (267)
T 4iiu_A          104 AWYGVVSNAGI  114 (267)
T ss_dssp             CCSEEEECCCC
T ss_pred             CccEEEECCCC
Confidence            79999999884

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=97.08  E-value=0.0029  Score=49.17  Aligned_cols=95  Identities=17%  Similarity=0.254  Sum_probs=63.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHc---CCCeEEEEcCChHHHHHHHH----cCCC-EEEeCCCCcccHHHHHHHHHHH
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAF---GAPRIVIVDVDDYRLSVAKK----LGAD-NIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~---g~~~vv~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      ++++.+||-+|+|. |..+..+++..   |+ +|+++|.+++-++.+++    .+.. .+..+..   +.    .++   
T Consensus        68 ~~~~~~vLDlGcGt-G~~~~~la~~~~~~~~-~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~---D~----~~~---  135 (261)
T 4gek_A           68 VQPGTQVYDLGCSL-GAATLSVRRNIHHDNC-KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEG---DI----RDI---  135 (261)
T ss_dssp             CCTTCEEEEETCTT-THHHHHHHHTCCSSSC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES---CT----TTC---
T ss_pred             CCCCCEEEEEeCCC-CHHHHHHHHhcCCCCC-EEEEEECCHHHHHHHHHHHHhhccCceEEEeec---cc----ccc---
Confidence            78999999999875 77777888764   55 59999999987776654    3332 1211111   11    111   


Q ss_pred             cCCCccEEEEcCCC--------HHHHHHHHHHhhcCCEEEEec
Q 048013          165 MGTGIDVSFDCAGF--------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       165 ~~~~~d~vi~~~g~--------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      .-..+|+|+....-        ...++.+.+.|+|||++++.-
T Consensus       136 ~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e  178 (261)
T 4gek_A          136 AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE  178 (261)
T ss_dssp             CCCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEe
Confidence            23468888765431        135788999999999998764

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=97.08  E-value=0.00085  Score=54.10  Aligned_cols=88  Identities=18%  Similarity=0.242  Sum_probs=63.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .++++.|+|.|.+|..+++.++.+|++ |++.+++..+.+...++|...        .+..+.+.        ..|+|+-
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~--------~~l~ell~--------~aDvV~l  206 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGAT-LQYHEAKALDTQTEQRLGLRQ--------VACSELFA--------SSDFILL  206 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCCE-EEEECSSCCCHHHHHHHTEEE--------CCHHHHHH--------HCSEEEE
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEECCCCCcHhHHHhcCcee--------CCHHHHHh--------hCCEEEE
Confidence            478999999999999999999999995 999998875555555666421        12222221        3788888


Q ss_pred             cCCCHH----HH-HHHHHHhhcCCEEEEec
Q 048013          175 CAGFNK----TM-STALSATRAGGKVCLVG  199 (216)
Q Consensus       175 ~~g~~~----~~-~~~~~~l~~~G~~v~~g  199 (216)
                      ++....    .+ ...+..|+++..++.+|
T Consensus       207 ~~P~t~~t~~li~~~~l~~mk~gailIN~a  236 (330)
T 4e5n_A          207 ALPLNADTLHLVNAELLALVRPGALLVNPC  236 (330)
T ss_dssp             CCCCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred             cCCCCHHHHHHhCHHHHhhCCCCcEEEECC
Confidence            887421    11 46777888888888887

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=97.07  E-value=0.0016  Score=50.41  Aligned_cols=97  Identities=14%  Similarity=0.034  Sum_probs=62.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-cCC--------------------CEEEeCCCCc
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-LGA--------------------DNIVKVSTNL  151 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~g~--------------------~~~~~~~~~~  151 (216)
                      ..++.+||..|+|. |..+..+++ .|+ .|+++|.++.-++.+++ .+.                    ..+..+.   
T Consensus        66 ~~~~~~vLD~GCG~-G~~~~~La~-~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---  139 (252)
T 2gb4_A           66 GQSGLRVFFPLCGK-AIEMKWFAD-RGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYC---  139 (252)
T ss_dssp             TCCSCEEEETTCTT-CTHHHHHHH-TTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEE---
T ss_pred             CCCCCeEEEeCCCC-cHHHHHHHH-CCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEE---
Confidence            46788999999875 767777776 488 59999999998888754 331                    1111111   


Q ss_pred             ccHHHHHHHHHHHcCCCccEEEEcCC-----C---HHHHHHHHHHhhcCCEEEEec
Q 048013          152 QDIAEEVEKIQKAMGTGIDVSFDCAG-----F---NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~d~vi~~~g-----~---~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      .++    .++.......||+|++...     .   ...++.+.+.|+|+|+++++.
T Consensus       140 ~D~----~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~  191 (252)
T 2gb4_A          140 CSI----FDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV  191 (252)
T ss_dssp             SCT----TTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             Ccc----ccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            111    1111111257999997432     1   235678889999999986543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=97.07  E-value=0.0015  Score=52.30  Aligned_cols=95  Identities=13%  Similarity=0.108  Sum_probs=63.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHHHH-cCCC---EEEeCCCCcccHHHHHHHHHHHcCCCccE
Q 048013           97 TNVLIMGSGPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVAKK-LGAD---NIVKVSTNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~~~-~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      .+||++|+|. |.++..+++.. +. ++++++.+++-.+.+++ ++..   .+..+   ..|..+.+.+   .....||+
T Consensus        91 ~rVLdIG~G~-G~la~~la~~~p~~-~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~---~~Da~~~l~~---~~~~~fDv  162 (317)
T 3gjy_A           91 LRITHLGGGA-CTMARYFADVYPQS-RNTVVELDAELARLSREWFDIPRAPRVKIR---VDDARMVAES---FTPASRDV  162 (317)
T ss_dssp             CEEEEESCGG-GHHHHHHHHHSTTC-EEEEEESCHHHHHHHHHHSCCCCTTTEEEE---ESCHHHHHHT---CCTTCEEE
T ss_pred             CEEEEEECCc-CHHHHHHHHHCCCc-EEEEEECCHHHHHHHHHhccccCCCceEEE---ECcHHHHHhh---ccCCCCCE
Confidence            3899999865 66777788754 56 69999999999988876 3321   11111   1233333322   12467999


Q ss_pred             EEEcCCC----------HHHHHHHHHHhhcCCEEEEec
Q 048013          172 SFDCAGF----------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       172 vi~~~g~----------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ||.....          .+.++.+.+.|+|+|.+++.-
T Consensus       163 Ii~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~  200 (317)
T 3gjy_A          163 IIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANC  200 (317)
T ss_dssp             EEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence            8874321          367789999999999988654

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=97.07  E-value=0.0015  Score=51.01  Aligned_cols=95  Identities=15%  Similarity=0.188  Sum_probs=60.5

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc--CCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           98 NVLIMGS-GPIGLVTMLAARAF--GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~--g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      +|||+|+ |.+|..+++.+...  |++ |++++++.++.+.+...+...+ ..+-.  +. +.+.+.    -.++|+||.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~~-V~~~~r~~~~~~~l~~~~~~~~-~~D~~--d~-~~l~~~----~~~~d~vi~   72 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPASQ-IIAIVRNVEKASTLADQGVEVR-HGDYN--QP-ESLQKA----FAGVSKLLF   72 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGGG-EEEEESCTTTTHHHHHTTCEEE-ECCTT--CH-HHHHHH----TTTCSEEEE
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCCe-EEEEEcCHHHHhHHhhcCCeEE-EeccC--CH-HHHHHH----HhcCCEEEE
Confidence            5899996 99999999888877  885 8888888776555544444332 22211  21 223332    236999999


Q ss_pred             cCCC-------HHHHHHHHHHhhcC--CEEEEeccC
Q 048013          175 CAGF-------NKTMSTALSATRAG--GKVCLVGMG  201 (216)
Q Consensus       175 ~~g~-------~~~~~~~~~~l~~~--G~~v~~g~~  201 (216)
                      +++.       ......+++.+...  ++++.++..
T Consensus        73 ~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~  108 (287)
T 2jl1_A           73 ISGPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYA  108 (287)
T ss_dssp             CCCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred             cCCCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence            9874       12334555665544  488888753

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=97.06  E-value=0.00076  Score=55.62  Aligned_cols=89  Identities=18%  Similarity=0.165  Sum_probs=62.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .++++.|+|.|.+|..+++.++.+|.+ |++.+++..+.+..+++|....       .+    +.++.    ...|+|+.
T Consensus       190 ~gktvGIIGlG~IG~~vA~~l~a~G~~-V~~~d~~~~~~~~~~~~G~~~~-------~~----l~ell----~~aDvV~l  253 (393)
T 2nac_A          190 EAMHVGTVAAGRIGLAVLRRLAPFDVH-LHYTDRHRLPESVEKELNLTWH-------AT----REDMY----PVCDVVTL  253 (393)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCE-EEEECSSCCCHHHHHHHTCEEC-------SS----HHHHG----GGCSEEEE
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCCE-EEEEcCCccchhhHhhcCceec-------CC----HHHHH----hcCCEEEE
Confidence            578999999999999999999999995 9999888655556666665421       11    12221    25788888


Q ss_pred             cCCCHH----HH-HHHHHHhhcCCEEEEec
Q 048013          175 CAGFNK----TM-STALSATRAGGKVCLVG  199 (216)
Q Consensus       175 ~~g~~~----~~-~~~~~~l~~~G~~v~~g  199 (216)
                      ++....    .+ ...+..|+++..++.++
T Consensus       254 ~~Plt~~t~~li~~~~l~~mk~gailIN~a  283 (393)
T 2nac_A          254 NCPLHPETEHMINDETLKLFKRGAYIVNTA  283 (393)
T ss_dssp             CSCCCTTTTTCBSHHHHTTSCTTEEEEECS
T ss_pred             ecCCchHHHHHhhHHHHhhCCCCCEEEECC
Confidence            777421    12 45666778877777776

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.04  E-value=0.0083  Score=48.85  Aligned_cols=90  Identities=18%  Similarity=0.152  Sum_probs=57.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEc
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC  175 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  175 (216)
                      ..+|.|+|.|.+|...+..+...|. .|++.++++++.+.+.+.|....       .+..+.+..     -...|+||-+
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~-------~s~~e~~~~-----a~~~DvVi~~   88 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALEREGIAGA-------RSIEEFCAK-----LVKPRVVWLM   88 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCBCC-------SSHHHHHHH-----SCSSCEEEEC
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCEEe-------CCHHHHHhc-----CCCCCEEEEe
Confidence            4689999999999999999999998 49999999998887776654311       122222221     1234777777


Q ss_pred             CCCHHHHHHHHH----HhhcCCEEEEec
Q 048013          176 AGFNKTMSTALS----ATRAGGKVCLVG  199 (216)
Q Consensus       176 ~g~~~~~~~~~~----~l~~~G~~v~~g  199 (216)
                      +... ....++.    .++++..++.++
T Consensus        89 vp~~-~v~~vl~~l~~~l~~g~iiId~s  115 (358)
T 4e21_A           89 VPAA-VVDSMLQRMTPLLAANDIVIDGG  115 (358)
T ss_dssp             SCGG-GHHHHHHHHGGGCCTTCEEEECS
T ss_pred             CCHH-HHHHHHHHHHhhCCCCCEEEeCC
Confidence            7764 3333333    334444555544

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=97.04  E-value=0.0074  Score=45.48  Aligned_cols=99  Identities=14%  Similarity=0.115  Sum_probs=66.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      ++..||-+|+|. |..++.+++...-..|+++|.+++..+.+    ++.+...+..+.   .|..+.+...  .....+|
T Consensus        34 ~~~~vLDiGcG~-G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~---~Da~~~l~~~--~~~~~~d  107 (218)
T 3dxy_A           34 EAPVTLEIGFGM-GASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMC---HDAVEVLHKM--IPDNSLR  107 (218)
T ss_dssp             CCCEEEEESCTT-CHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEEC---SCHHHHHHHH--SCTTCEE
T ss_pred             CCCeEEEEeeeC-hHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEE---CCHHHHHHHH--cCCCChh
Confidence            678899999875 77888888876433699999999876655    335655443322   2333333221  1245689


Q ss_pred             EEEEcCCCH--------------HHHHHHHHHhhcCCEEEEec
Q 048013          171 VSFDCAGFN--------------KTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       171 ~vi~~~g~~--------------~~~~~~~~~l~~~G~~v~~g  199 (216)
                      .|+-....+              ..++.+.+.|+|+|++++.-
T Consensus       108 ~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A          108 MVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             EEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence            888764331              47788999999999988654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=97.04  E-value=0.0057  Score=47.54  Aligned_cols=101  Identities=18%  Similarity=0.189  Sum_probs=64.7

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEE--eCCCCcccHHHHHHHHHHH
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIV--KVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~  164 (216)
                      .++...++++.+||-+|+|. |..++.+++. |. .|+++|.+++-++.+++.-....+  +.......    ..   ..
T Consensus        37 il~~l~l~~g~~VLDlGcGt-G~~a~~La~~-g~-~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~----~~---~~  106 (261)
T 3iv6_A           37 DIFLENIVPGSTVAVIGAST-RFLIEKALER-GA-SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAE----IP---KE  106 (261)
T ss_dssp             HHHTTTCCTTCEEEEECTTC-HHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSC----CC---GG
T ss_pred             HHHhcCCCCcCEEEEEeCcc-hHHHHHHHhc-CC-EEEEEECCHHHHHHHHHHHHhccceeeeeecccc----cc---cc
Confidence            34556788999999999875 7777778774 66 599999999988888663322111  11110000    00   01


Q ss_pred             cCCCccEEEEcCCC--------HHHHHHHHHHhhcCCEEEEe
Q 048013          165 MGTGIDVSFDCAGF--------NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       165 ~~~~~d~vi~~~g~--------~~~~~~~~~~l~~~G~~v~~  198 (216)
                      ....||+|+.+..-        ...++.+.+.| |+|++++.
T Consensus       107 ~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS  147 (261)
T 3iv6_A          107 LAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRAS  147 (261)
T ss_dssp             GTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred             cCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEE
Confidence            23579999975431        13566777788 99998754

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=97.04  E-value=0.0054  Score=47.44  Aligned_cols=103  Identities=16%  Similarity=0.216  Sum_probs=67.8

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCC-EEEeCCCCcccHHHHHHHHH
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGAD-NIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~  162 (216)
                      ++...++++.+||.+|+|. |..+..+++..+. .++++|.+++..+.+++    .+.. .+.....+..+       + 
T Consensus        54 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-------~-  123 (273)
T 3bus_A           54 IALLDVRSGDRVLDVGCGI-GKPAVRLATARDV-RVTGISISRPQVNQANARATAAGLANRVTFSYADAMD-------L-  123 (273)
T ss_dssp             HHHSCCCTTCEEEEESCTT-SHHHHHHHHHSCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS-------C-
T ss_pred             HHhcCCCCCCEEEEeCCCC-CHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcccc-------C-
Confidence            3566788999999999875 7778888887787 59999999987776644    3432 11111111111       0 


Q ss_pred             HHcCCCccEEEEcC-----CC-HHHHHHHHHHhhcCCEEEEecc
Q 048013          163 KAMGTGIDVSFDCA-----GF-NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       163 ~~~~~~~d~vi~~~-----g~-~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      ......||+|+..-     .+ ...++.+.+.|+|+|++++...
T Consensus       124 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  167 (273)
T 3bus_A          124 PFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADF  167 (273)
T ss_dssp             CSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            01235699998532     22 3566888899999999987653

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.04  E-value=0.0014  Score=53.41  Aligned_cols=49  Identities=24%  Similarity=0.266  Sum_probs=41.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHH-HHHHcCCC
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLS-VAKKLGAD  142 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~-~~~~~g~~  142 (216)
                      --++++|+|+|+|.+|..+++.+..+|++ |++.|++.++.+ +++++++.
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~Gak-Vvv~D~~~~~l~~~a~~~ga~  219 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAK-LVVTDVNKAAVSAAVAEEGAD  219 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHHCCE
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHcCCE
Confidence            35789999999999999999999999995 889999988766 45556653

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=97.04  E-value=0.0071  Score=45.28  Aligned_cols=100  Identities=14%  Similarity=0.178  Sum_probs=62.4

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHH----HHHHcCCCEEEeCCCCcccHHHHHHHHHHHcC
Q 048013           91 ANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLS----VAKKLGADNIVKVSTNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        91 ~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      ..++++++||-+|+|+ |..+..+++..+...|+++|.+++..+    .+++..  .+..+..+..+..    ... ...
T Consensus        53 ~~~~~g~~VLDlGcGt-G~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~--~v~~~~~d~~~~~----~~~-~~~  124 (210)
T 1nt2_A           53 LKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN--NIIPLLFDASKPW----KYS-GIV  124 (210)
T ss_dssp             CCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS--SEEEECSCTTCGG----GTT-TTC
T ss_pred             cCCCCCCEEEEECCcC-CHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCC--CeEEEEcCCCCch----hhc-ccc
Confidence            4568899999999875 777777888765336999999987543    333332  2211111111110    000 012


Q ss_pred             CCccEEEEcCCCHH----HHHHHHHHhhcCCEEEEe
Q 048013          167 TGIDVSFDCAGFNK----TMSTALSATRAGGKVCLV  198 (216)
Q Consensus       167 ~~~d~vi~~~g~~~----~~~~~~~~l~~~G~~v~~  198 (216)
                      ..||+|+.....+.    .++.+.+.|+|+|++++.
T Consensus       125 ~~fD~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          125 EKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cceeEEEEeccChhHHHHHHHHHHHHhCCCCEEEEE
Confidence            46999998765422    257788999999999876

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.04  E-value=0.0064  Score=48.95  Aligned_cols=89  Identities=18%  Similarity=0.187  Sum_probs=61.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHH-H-cCCCeEEEEcCChHHHHH-HHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           97 TNVLIMGSGPIGLVTMLAAR-A-FGAPRIVIVDVDDYRLSV-AKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~-~-~g~~~vv~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      -+|.|+|+|.+|...++.++ . .+++.+.+.++++++.+. ++++|....+.      ++    .++.  ...++|+|+
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~------~~----~~~l--~~~~~D~V~   76 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYT------NY----KDMI--DTENIDAIF   76 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEES------CH----HHHH--TTSCCSEEE
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccC------CH----HHHh--cCCCCCEEE
Confidence            47899999999998888877 4 366544567888888754 45677754332      22    2332  234799999


Q ss_pred             EcCCCHHHHHHHHHHhhcCCEEEEe
Q 048013          174 DCAGFNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       174 ~~~g~~~~~~~~~~~l~~~G~~v~~  198 (216)
                      .+++.....+.+..+|+.+ +-+++
T Consensus        77 i~tp~~~h~~~~~~al~~G-~~v~~  100 (346)
T 3cea_A           77 IVAPTPFHPEMTIYAMNAG-LNVFC  100 (346)
T ss_dssp             ECSCGGGHHHHHHHHHHTT-CEEEE
T ss_pred             EeCChHhHHHHHHHHHHCC-CEEEE
Confidence            9999877777777888765 44444

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.03  E-value=0.0042  Score=44.31  Aligned_cols=102  Identities=13%  Similarity=0.169  Sum_probs=62.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccE
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      ++++++||.+|+|. |..+..+++..|. ..++++|.++ ..+.    ..-..+..+..+....+.+.+.  .....+|+
T Consensus        20 ~~~~~~vLd~G~G~-G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----~~~~~~~~d~~~~~~~~~~~~~--~~~~~~D~   91 (180)
T 1ej0_A           20 FKPGMTVVDLGAAP-GGWSQYVVTQIGGKGRIIACDLLP-MDPI----VGVDFLQGDFRDELVMKALLER--VGDSKVQV   91 (180)
T ss_dssp             CCTTCEEEEESCTT-CHHHHHHHHHHCTTCEEEEEESSC-CCCC----TTEEEEESCTTSHHHHHHHHHH--HTTCCEEE
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHHhCCCCeEEEEECcc-cccc----CcEEEEEcccccchhhhhhhcc--CCCCceeE
Confidence            67889999999876 7778888887643 3699999886 3221    1112222111111111112221  13457999


Q ss_pred             EEEc-----CCC------------HHHHHHHHHHhhcCCEEEEeccCC
Q 048013          172 SFDC-----AGF------------NKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       172 vi~~-----~g~------------~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      |+..     .+.            ...++.+.+.|+|+|++++.....
T Consensus        92 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  139 (180)
T 1ej0_A           92 VMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             EEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            9983     333            256678889999999999765433

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.02  E-value=0.0034  Score=47.13  Aligned_cols=104  Identities=18%  Similarity=0.229  Sum_probs=67.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHHH----cCCCE-EEeCCCCcccHHHHHHHHHHHc-
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAKK----LGADN-IVKVSTNLQDIAEEVEKIQKAM-  165 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~~~~~~~~~-  165 (216)
                      ..++.+||-+|+|. |..++.+++.++ ..+++++|.+++..+.+++    .+... +..+   ..+..+.+..+.... 
T Consensus        62 ~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~---~~d~~~~~~~~~~~~~  137 (225)
T 3tr6_A           62 LMQAKKVIDIGTFT-GYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLR---LSPAKDTLAELIHAGQ  137 (225)
T ss_dssp             HHTCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE---ESCHHHHHHHHHTTTC
T ss_pred             hhCCCEEEEeCCcc-hHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEE---eCCHHHHHHHhhhccC
Confidence            45678999999875 778888888764 3469999999987776644    35442 2221   123433333331100 


Q ss_pred             CCCccEEEEcCCC---HHHHHHHHHHhhcCCEEEEecc
Q 048013          166 GTGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       166 ~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      ...||+|+-....   ...++.+.+.|+|+|.++.-..
T Consensus       138 ~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~  175 (225)
T 3tr6_A          138 AWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNV  175 (225)
T ss_dssp             TTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             CCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            1579999965442   3456888899999999987543

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.02  E-value=0.01  Score=47.32  Aligned_cols=46  Identities=20%  Similarity=0.216  Sum_probs=37.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC--hHHHHHHHHcCCC
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD--DYRLSVAKKLGAD  142 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~--~~~~~~~~~~g~~  142 (216)
                      .+|.|+|+|.+|...++.+...|...|++.+++  +++.+.+.+.|..
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~   72 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVS   72 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCE
Confidence            579999999999999999988898459999996  5777777776653

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=97.02  E-value=0.0009  Score=51.97  Aligned_cols=96  Identities=18%  Similarity=0.214  Sum_probs=62.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      ..+.+||-+|+|. |..+..++. .+. +|+++|.+++-++.+++..--....  ...++.        ......+|+|+
T Consensus        38 ~~~~~vLDvGcGt-G~~~~~l~~-~~~-~v~gvD~s~~ml~~a~~~~~v~~~~--~~~e~~--------~~~~~sfD~v~  104 (257)
T 4hg2_A           38 PARGDALDCGCGS-GQASLGLAE-FFE-RVHAVDPGEAQIRQALRHPRVTYAV--APAEDT--------GLPPASVDVAI  104 (257)
T ss_dssp             SCSSEEEEESCTT-TTTHHHHHT-TCS-EEEEEESCHHHHHTCCCCTTEEEEE--CCTTCC--------CCCSSCEEEEE
T ss_pred             CCCCCEEEEcCCC-CHHHHHHHH-hCC-EEEEEeCcHHhhhhhhhcCCceeeh--hhhhhh--------cccCCcccEEE
Confidence            3457899999874 777777765 455 5999999987776654432111111  111111        01245699998


Q ss_pred             EcCCC-----HHHHHHHHHHhhcCCEEEEeccCC
Q 048013          174 DCAGF-----NKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       174 ~~~g~-----~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      .+..-     +..++++.+.|+|+|+++++....
T Consensus       105 ~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~~~~  138 (257)
T 4hg2_A          105 AAQAMHWFDLDRFWAELRRVARPGAVFAAVTYGL  138 (257)
T ss_dssp             ECSCCTTCCHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             EeeehhHhhHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            75442     456789999999999998877543

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=97.02  E-value=0.0039  Score=51.45  Aligned_cols=99  Identities=22%  Similarity=0.152  Sum_probs=65.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      .+++++||-.|+|. |..++.+++ .|+. |+++|.++..++.+++    .+....+.    ..|..+.+...   .+. 
T Consensus       212 ~~~g~~VLDlg~Gt-G~~sl~~a~-~ga~-V~avDis~~al~~a~~n~~~ng~~~~~~----~~D~~~~l~~~---~~~-  280 (393)
T 4dmg_A          212 VRPGERVLDVYSYV-GGFALRAAR-KGAY-ALAVDKDLEALGVLDQAALRLGLRVDIR----HGEALPTLRGL---EGP-  280 (393)
T ss_dssp             CCTTCEEEEESCTT-THHHHHHHH-TTCE-EEEEESCHHHHHHHHHHHHHHTCCCEEE----ESCHHHHHHTC---CCC-
T ss_pred             hcCCCeEEEcccch-hHHHHHHHH-cCCe-EEEEECCHHHHHHHHHHHHHhCCCCcEE----EccHHHHHHHh---cCC-
Confidence            45699999998764 556666666 4886 9999999998877654    45542222    23433333221   233 


Q ss_pred             ccEEEEcCCC---------------HHHHHHHHHHhhcCCEEEEeccCC
Q 048013          169 IDVSFDCAGF---------------NKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       169 ~d~vi~~~g~---------------~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      ||+|+-..+.               ...+..+.+.|+|+|.++.+....
T Consensus       281 fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~  329 (393)
T 4dmg_A          281 FHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY  329 (393)
T ss_dssp             EEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            9999875443               255677889999999998776433

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=97.01  E-value=0.0046  Score=52.10  Aligned_cols=99  Identities=21%  Similarity=0.250  Sum_probs=64.9

Q ss_pred             HcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHHH----HcCCCEEEeCCCCcccHHHHHHHHHHH
Q 048013           90 RANIGPETNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVAK----KLGADNIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        90 ~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      ...++++++||-+|+|+ |..++.++..++- ..|+++|.++++.+.++    ++|.. +....   .|..+. ..   .
T Consensus        96 ~L~~~~g~~VLDlgaGp-G~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~---~Da~~l-~~---~  166 (464)
T 3m6w_A           96 LLDPKPGERVLDLAAAP-GGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQ---APPRAL-AE---A  166 (464)
T ss_dssp             HHCCCTTCEEEESSCTT-CHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEEC---SCHHHH-HH---H
T ss_pred             hcCcCCCCEEEEEcCCc-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEE---CCHHHh-hh---h
Confidence            34578999999998765 5566777776542 36999999999877664    35766 33322   233221 11   1


Q ss_pred             cCCCccEEEE---cCCC-------------------------HHHHHHHHHHhhcCCEEEE
Q 048013          165 MGTGIDVSFD---CAGF-------------------------NKTMSTALSATRAGGKVCL  197 (216)
Q Consensus       165 ~~~~~d~vi~---~~g~-------------------------~~~~~~~~~~l~~~G~~v~  197 (216)
                      ....||.|+-   |+|.                         ...+..+++.|+|+|+++.
T Consensus       167 ~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lvy  227 (464)
T 3m6w_A          167 FGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVY  227 (464)
T ss_dssp             HCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            2457999985   3321                         2356778889999999885

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=96.99  E-value=0.0025  Score=48.12  Aligned_cols=98  Identities=22%  Similarity=0.385  Sum_probs=65.0

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCC-EEEeCCCCcccHHHHHHHHHHHc
Q 048013           91 ANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGAD-NIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        91 ~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      ..++++.+||-+|+|..|..++.+++..+. .|+++|.+++..+.+++    .+.. .++.-  +....    ..+   .
T Consensus        51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~--d~~~~----~~~---~  120 (230)
T 3evz_A           51 TFLRGGEVALEIGTGHTAMMALMAEKFFNC-KVTATEVDEEFFEYARRNIERNNSNVRLVKS--NGGII----KGV---V  120 (230)
T ss_dssp             TTCCSSCEEEEECCTTTCHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHTTCCCEEEEC--SSCSS----TTT---C
T ss_pred             hhcCCCCEEEEcCCCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHhCCCcEEEeC--Cchhh----hhc---c
Confidence            346789999999988458888888887665 59999999988776643    3432 12221  10000    011   2


Q ss_pred             CCCccEEEEcCCC-------------------------HHHHHHHHHHhhcCCEEEEe
Q 048013          166 GTGIDVSFDCAGF-------------------------NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       166 ~~~~d~vi~~~g~-------------------------~~~~~~~~~~l~~~G~~v~~  198 (216)
                      ...||+|+....-                         ...++.+.+.|+|+|+++++
T Consensus       121 ~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (230)
T 3evz_A          121 EGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY  178 (230)
T ss_dssp             CSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence            3579999965220                         35567788889999999875

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.99  E-value=0.0047  Score=48.70  Aligned_cols=92  Identities=21%  Similarity=0.285  Sum_probs=57.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC-----hHHHHHHHH---cCCCEEEeCCCCcccHHHHHHHHHHHcC
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVD-----DYRLSVAKK---LGADNIVKVSTNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~-----~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      ..+|+|+|+ |.+|..+++.+...|.+ |++++++     .++.+.+++   .+.. ++..+-  .+. +.+.+..    
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~~~~~~~~~~~~~~~~-~~~~D~--~d~-~~l~~~~----   74 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHP-TYVLFRPEVVSNIDKVQMLLYFKQLGAK-LIEASL--DDH-QRLVDAL----   74 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCC-EEEECCSCCSSCHHHHHHHHHHHTTTCE-EECCCS--SCH-HHHHHHH----
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCc-EEEEECCCcccchhHHHHHHHHHhCCeE-EEeCCC--CCH-HHHHHHH----
Confidence            357999996 99999999999889986 8888887     344444333   2333 222221  121 2333332    


Q ss_pred             CCccEEEEcCCCH------HHHHHHHHHhhcCC---EEE
Q 048013          167 TGIDVSFDCAGFN------KTMSTALSATRAGG---KVC  196 (216)
Q Consensus       167 ~~~d~vi~~~g~~------~~~~~~~~~l~~~G---~~v  196 (216)
                      .++|+||.+++..      .....+++.++..|   +++
T Consensus        75 ~~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v  113 (313)
T 1qyd_A           75 KQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFL  113 (313)
T ss_dssp             TTCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred             hCCCEEEECCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence            3699999998852      23355666665544   666

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=96.99  E-value=0.0056  Score=47.06  Aligned_cols=100  Identities=20%  Similarity=0.234  Sum_probs=65.7

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      +....+++.+||.+|+|. |..+..+++.. . .++++|.+++.++.+++    .+...+.....+..+       + ..
T Consensus        31 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~-~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-------l-~~   99 (260)
T 1vl5_A           31 QIAALKGNEEVLDVATGG-GHVANAFAPFV-K-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ-------M-PF   99 (260)
T ss_dssp             HHHTCCSCCEEEEETCTT-CHHHHHHGGGS-S-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C-------C-CS
T ss_pred             HHhCCCCCCEEEEEeCCC-CHHHHHHHHhC-C-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh-------C-CC
Confidence            445677899999999873 77777777654 4 69999999988776654    343322111111111       1 01


Q ss_pred             cCCCccEEEEcCCC------HHHHHHHHHHhhcCCEEEEec
Q 048013          165 MGTGIDVSFDCAGF------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       165 ~~~~~d~vi~~~g~------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ....||+|+....-      ...+..+.+.|+|+|++++..
T Consensus       100 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          100 TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            23579999986442      356788999999999998764

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.98  E-value=0.0021  Score=51.80  Aligned_cols=86  Identities=21%  Similarity=0.231  Sum_probs=59.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .+++|.|+|.|.+|..+++.++.+|.+ |++.+++.++ +.+.++|...    .    +..+.+.        ..|+|+.
T Consensus       145 ~g~~vgIIG~G~iG~~vA~~l~~~G~~-V~~~d~~~~~-~~~~~~g~~~----~----~l~e~l~--------~aDiVil  206 (333)
T 2d0i_A          145 YGKKVGILGMGAIGKAIARRLIPFGVK-LYYWSRHRKV-NVEKELKARY----M----DIDELLE--------KSDIVIL  206 (333)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCE-EEEECSSCCH-HHHHHHTEEE----C----CHHHHHH--------HCSEEEE
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCCE-EEEECCCcch-hhhhhcCcee----c----CHHHHHh--------hCCEEEE
Confidence            567999999999999999999999994 9999988776 4455555321    0    2222111        4788888


Q ss_pred             cCCCHH----HH-HHHHHHhhcCCEEEEec
Q 048013          175 CAGFNK----TM-STALSATRAGGKVCLVG  199 (216)
Q Consensus       175 ~~g~~~----~~-~~~~~~l~~~G~~v~~g  199 (216)
                      ++....    .+ +..+..|+++ .++.++
T Consensus       207 ~vp~~~~t~~~i~~~~~~~mk~g-ilin~s  235 (333)
T 2d0i_A          207 ALPLTRDTYHIINEERVKKLEGK-YLVNIG  235 (333)
T ss_dssp             CCCCCTTTTTSBCHHHHHHTBTC-EEEECS
T ss_pred             cCCCChHHHHHhCHHHHhhCCCC-EEEECC
Confidence            887631    12 3456677887 666665

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=96.98  E-value=0.005  Score=49.19  Aligned_cols=98  Identities=21%  Similarity=0.199  Sum_probs=63.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc-C--------CCEEEeCCCCcccHHHHHHHHHHH
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL-G--------ADNIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~-g--------~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      .++++||++|+|. |..+..+++..+..++++++.+++-.+.+++. .        ...+..+   ..|..+.+.    .
T Consensus        76 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~---~~D~~~~l~----~  147 (314)
T 1uir_A           76 PEPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLV---IDDARAYLE----R  147 (314)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEE---ESCHHHHHH----H
T ss_pred             CCCCeEEEEcCCc-CHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEE---EchHHHHHH----h
Confidence            4668999999764 56666777765555799999999888777542 1        1112111   123333222    2


Q ss_pred             cCCCccEEEEcCC-------------CHHHHHHHHHHhhcCCEEEEec
Q 048013          165 MGTGIDVSFDCAG-------------FNKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       165 ~~~~~d~vi~~~g-------------~~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ....||+|+....             ....++.+.+.|+|+|.+++..
T Consensus       148 ~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          148 TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            3567999886432             1356788999999999998763

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=96.98  E-value=0.0038  Score=47.45  Aligned_cols=102  Identities=22%  Similarity=0.231  Sum_probs=67.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHHH----cCCCE-EEeCCCCcccHHHHHHHHHHHcC
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAKK----LGADN-IVKVSTNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      ..++++||.+|+| .|..++.+++.++ -.+++.+|.+++..+.+++    .+... +...   ..+..+.+.++. ..+
T Consensus        70 ~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~---~~d~~~~l~~l~-~~~  144 (232)
T 3cbg_A           70 LTGAKQVLEIGVF-RGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLR---LGPALATLEQLT-QGK  144 (232)
T ss_dssp             HHTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEE---ESCHHHHHHHHH-TSS
T ss_pred             hcCCCEEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE---EcCHHHHHHHHH-hcC
Confidence            3467899999987 5888888888764 2269999999988776654    35432 2211   134444344332 112


Q ss_pred             --CCccEEEEcCCC---HHHHHHHHHHhhcCCEEEEec
Q 048013          167 --TGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       167 --~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~g  199 (216)
                        ..||+||-....   ...++.+.+.|+|+|.++.-.
T Consensus       145 ~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~  182 (232)
T 3cbg_A          145 PLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDN  182 (232)
T ss_dssp             SCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence              579999854432   356788899999999998754

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=96.97  E-value=0.021  Score=41.59  Aligned_cols=99  Identities=18%  Similarity=0.192  Sum_probs=61.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHcCCCc
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      .++++||-+|+|. |..++.+++ .+...|+++|.+++..+.+++    .+...+..+   ..++.+....   .....+
T Consensus        43 ~~~~~vLDlgcG~-G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~---~~d~~~~~~~---~~~~~f  114 (189)
T 3p9n_A           43 LTGLAVLDLYAGS-GALGLEALS-RGAASVLFVESDQRSAAVIARNIEALGLSGATLR---RGAVAAVVAA---GTTSPV  114 (189)
T ss_dssp             CTTCEEEEETCTT-CHHHHHHHH-TTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEE---ESCHHHHHHH---CCSSCC
T ss_pred             CCCCEEEEeCCCc-CHHHHHHHH-CCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEE---EccHHHHHhh---ccCCCc
Confidence            5788999998763 555555555 466579999999987776644    354333221   1233332221   125679


Q ss_pred             cEEEEcCC--C-----HHHHHHHHH--HhhcCCEEEEecc
Q 048013          170 DVSFDCAG--F-----NKTMSTALS--ATRAGGKVCLVGM  200 (216)
Q Consensus       170 d~vi~~~g--~-----~~~~~~~~~--~l~~~G~~v~~g~  200 (216)
                      |+|+-...  .     ...+..+.+  .|+|+|++++--.
T Consensus       115 D~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~  154 (189)
T 3p9n_A          115 DLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERA  154 (189)
T ss_dssp             SEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred             cEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence            99997532  1     234566666  8999999987543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=96.97  E-value=0.014  Score=45.97  Aligned_cols=105  Identities=18%  Similarity=0.218  Sum_probs=66.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHHHHc-----C-CCEEEeCCCCcccHHHHHHHHHHHc
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVAKKL-----G-ADNIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~~~~-----g-~~~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      ..++.+||-+|+|. |..+..+++.+ ...+|+++|.++...+.+++.     + ...+..+..+..+..  ........
T Consensus        34 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~  110 (299)
T 3g5t_A           34 DGERKLLVDVGCGP-GTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFK--FLGADSVD  110 (299)
T ss_dssp             CSCCSEEEEETCTT-THHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCG--GGCTTTTT
T ss_pred             cCCCCEEEEECCCC-CHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCC--cccccccc
Confidence            46889999999885 88888898865 444799999999888777553     1 222211111111110  00000000


Q ss_pred             CCCccEEEEcCCC-----HHHHHHHHHHhhcCCEEEEecc
Q 048013          166 GTGIDVSFDCAGF-----NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       166 ~~~~d~vi~~~g~-----~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      ...+|+|+....-     ...++.+.+.|+|+|++++...
T Consensus       111 ~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~~~  150 (299)
T 3g5t_A          111 KQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIWGY  150 (299)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEEec
Confidence            1579999875442     4677889999999999987553

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=96.97  E-value=0.001  Score=50.28  Aligned_cols=95  Identities=18%  Similarity=0.207  Sum_probs=66.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCC-EEEeCCCCcccHHHHHHHHHHHc-CCCcc
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGAD-NIVKVSTNLQDIAEEVEKIQKAM-GTGID  170 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~d  170 (216)
                      ++++.+||-+|+|. |..+..+++. +. .|+++|.++..++.+++.... ..+.-+.. +.       + ... ...||
T Consensus        46 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~-~~-------~-~~~~~~~fD  113 (226)
T 3m33_A           46 LTPQTRVLEAGCGH-GPDAARFGPQ-AA-RWAAYDFSPELLKLARANAPHADVYEWNGK-GE-------L-PAGLGAPFG  113 (226)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHCTTSEEEECCSC-SS-------C-CTTCCCCEE
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHc-CC-EEEEEECCHHHHHHHHHhCCCceEEEcchh-hc-------c-CCcCCCCEE
Confidence            46789999999875 6677777776 76 599999999988888765322 22221110 00       0 012 45799


Q ss_pred             EEEEcCCCHHHHHHHHHHhhcCCEEEEec
Q 048013          171 VSFDCAGFNKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       171 ~vi~~~g~~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      +|+........++.+.+.|+|+|+++..+
T Consensus       114 ~v~~~~~~~~~l~~~~~~LkpgG~l~~~~  142 (226)
T 3m33_A          114 LIVSRRGPTSVILRLPELAAPDAHFLYVG  142 (226)
T ss_dssp             EEEEESCCSGGGGGHHHHEEEEEEEEEEE
T ss_pred             EEEeCCCHHHHHHHHHHHcCCCcEEEEeC
Confidence            99988666677889999999999999554

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=96.97  E-value=0.0026  Score=47.56  Aligned_cols=101  Identities=20%  Similarity=0.224  Sum_probs=66.8

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCcc
Q 048013           91 ANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        91 ~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      ....++.+||-+|+|. |..+..+++. |. +++++|.+++..+.+++.+.......     ++.+ +.......+..||
T Consensus        48 ~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~~~~~fD  118 (227)
T 3e8s_A           48 ILGRQPERVLDLGCGE-GWLLRALADR-GI-EAVGVDGDRTLVDAARAAGAGEVHLA-----SYAQ-LAEAKVPVGKDYD  118 (227)
T ss_dssp             HHHTCCSEEEEETCTT-CHHHHHHHTT-TC-EEEEEESCHHHHHHHHHTCSSCEEEC-----CHHH-HHTTCSCCCCCEE
T ss_pred             hhcCCCCEEEEeCCCC-CHHHHHHHHC-CC-EEEEEcCCHHHHHHHHHhcccccchh-----hHHh-hcccccccCCCcc
Confidence            3345679999999875 6666666665 77 59999999999988887643333321     2211 1100001234599


Q ss_pred             EEEEcCC-----CHHHHHHHHHHhhcCCEEEEecc
Q 048013          171 VSFDCAG-----FNKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       171 ~vi~~~g-----~~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      +|+....     ....++.+.+.|+|+|++++.-.
T Consensus       119 ~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          119 LICANFALLHQDIIELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             EEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEec
Confidence            9987533     24677889999999999997654

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=96.97  E-value=0.0083  Score=47.25  Aligned_cols=87  Identities=16%  Similarity=0.229  Sum_probs=58.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      .+|.|+|+|.+|...+..+...|.+ |++.++++++.+.+.+.|..   ..    .+..+.+.        ..|+||.++
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~-V~~~~~~~~~~~~~~~~g~~---~~----~~~~~~~~--------~~D~vi~~v   68 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVT-VYAFDLMEANVAAVVAQGAQ---AC----ENNQKVAA--------ASDIIFTSL   68 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCE-EEEECSSHHHHHHHHTTTCE---EC----SSHHHHHH--------HCSEEEECC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHCCCe---ec----CCHHHHHh--------CCCEEEEEC
Confidence            5799999999999999888888984 88999998887777655542   11    12222211        378999998


Q ss_pred             CCHHHHHHHH-------HHhhcCCEEEEec
Q 048013          177 GFNKTMSTAL-------SATRAGGKVCLVG  199 (216)
Q Consensus       177 g~~~~~~~~~-------~~l~~~G~~v~~g  199 (216)
                      +.+...+..+       ..++++..++.++
T Consensus        69 p~~~~~~~v~~~~~~l~~~l~~~~~vv~~~   98 (301)
T 3cky_A           69 PNAGIVETVMNGPGGVLSACKAGTVIVDMS   98 (301)
T ss_dssp             SSHHHHHHHHHSTTCHHHHSCTTCEEEECC
T ss_pred             CCHHHHHHHHcCcchHhhcCCCCCEEEECC
Confidence            7644444444       3455566666554

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=96.96  E-value=0.0056  Score=46.02  Aligned_cols=97  Identities=14%  Similarity=0.233  Sum_probs=63.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCC---------EEEeCCCCcccHHHHHHHHHH
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGAD---------NIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~---------~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ++++.+||.+|+|. |..+..+++. |. .++++|.+++..+.+++....         .+.....+..+       + .
T Consensus        28 ~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-------~-~   96 (235)
T 3sm3_A           28 LQEDDEILDIGCGS-GKISLELASK-GY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASS-------L-S   96 (235)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTS-------C-C
T ss_pred             CCCCCeEEEECCCC-CHHHHHHHhC-CC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccc-------c-C
Confidence            56889999999875 7777777776 77 599999999988887663221         11111011111       0 0


Q ss_pred             HcCCCccEEEEcCC-----CH----HHHHHHHHHhhcCCEEEEecc
Q 048013          164 AMGTGIDVSFDCAG-----FN----KTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       164 ~~~~~~d~vi~~~g-----~~----~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      .....+|+|+....     +.    ..++.+.+.|+|+|++++...
T Consensus        97 ~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A           97 FHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             SCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence            12457999986432     22    467888999999999988754

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.95  E-value=0.0046  Score=49.41  Aligned_cols=100  Identities=20%  Similarity=0.270  Sum_probs=59.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHH----HHHHH-cCCC-EEEeCCCCcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRL----SVAKK-LGAD-NIVKVSTNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~----~~~~~-~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~  167 (216)
                      .+.+|||+|+ |.+|..+++.+...|++ |++++++.++.    +.+.+ .+.. ..+..+-.  +. +.+.++.+.  .
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--d~-~~~~~~~~~--~   77 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYD-VVIADNLVNSKREAIARIEKITGKTPAFHETDVS--DE-RALARIFDA--H   77 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTT--CH-HHHHHHHHH--S
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCc-EEEEecCCcchHHHHHHHHhhcCCCceEEEeecC--CH-HHHHHHHhc--c
Confidence            4578999996 99999999999999985 88888765432    22222 2322 22222211  21 223333221  3


Q ss_pred             CccEEEEcCCCH-----------------HHHHHHHHHhhcC--CEEEEecc
Q 048013          168 GIDVSFDCAGFN-----------------KTMSTALSATRAG--GKVCLVGM  200 (216)
Q Consensus       168 ~~d~vi~~~g~~-----------------~~~~~~~~~l~~~--G~~v~~g~  200 (216)
                      ++|+||.+++..                 .....+++.++..  ++++.++.
T Consensus        78 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS  129 (341)
T 3enk_A           78 PITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSS  129 (341)
T ss_dssp             CCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence            799999999841                 1123445555443  58888774

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.95  E-value=0.011  Score=47.96  Aligned_cols=99  Identities=12%  Similarity=0.130  Sum_probs=59.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHH--HHHHHcCCCEEEeCC-CCcccHHHHHHHHHHHcCCCccE
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRL--SVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~--~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      +++|+|+|+ |.+|..+++.+...|.+ |++++++.++.  +.+.....-..+..+ -.  +. +.+.+..    .++|+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~--d~-~~l~~~~----~~~d~   76 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGHH-VRAQVHSLKGLIAEELQAIPNVTLFQGPLLN--NV-PLMDTLF----EGAHL   76 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCC-EEEEESCSCSHHHHHHHTSTTEEEEESCCTT--CH-HHHHHHH----TTCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCE-EEEEECCCChhhHHHHhhcCCcEEEECCccC--CH-HHHHHHH----hcCCE
Confidence            567999996 99999999988888986 88888876654  333322111222222 11  21 2233322    36899


Q ss_pred             EEEcCCCH-----HHHHHHHHHhhcC---CEEEEeccCC
Q 048013          172 SFDCAGFN-----KTMSTALSATRAG---GKVCLVGMGH  202 (216)
Q Consensus       172 vi~~~g~~-----~~~~~~~~~l~~~---G~~v~~g~~~  202 (216)
                      ||.+++..     ...+.+++.++..   ++++.++...
T Consensus        77 Vi~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           77 AFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             EEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             EEEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            99877642     2224555555443   5898887543

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=96.95  E-value=0.0036  Score=49.01  Aligned_cols=84  Identities=13%  Similarity=0.067  Sum_probs=53.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG  177 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  177 (216)
                      +|.|+|+|.+|...+..+.. |.+ |++.++++++.+.+.+.|.... .    ..+       .    -...|+||.++.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~-V~~~~~~~~~~~~~~~~g~~~~-~----~~~-------~----~~~~D~vi~~v~   64 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFP-TLVWNRTFEKALRHQEEFGSEA-V----PLE-------R----VAEARVIFTCLP   64 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSC-EEEECSSTHHHHHHHHHHCCEE-C----CGG-------G----GGGCSEEEECCS
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCe-EEEEeCCHHHHHHHHHCCCccc-C----HHH-------H----HhCCCEEEEeCC
Confidence            58899999999998888888 986 8899999888777665454321 1    010       0    124778888777


Q ss_pred             CHHHHHHHHHH----hhcCCEEEEec
Q 048013          178 FNKTMSTALSA----TRAGGKVCLVG  199 (216)
Q Consensus       178 ~~~~~~~~~~~----l~~~G~~v~~g  199 (216)
                      .+...+..++.    ++++..++.++
T Consensus        65 ~~~~~~~v~~~l~~~l~~~~~vv~~s   90 (289)
T 2cvz_A           65 TTREVYEVAEALYPYLREGTYWVDAT   90 (289)
T ss_dssp             SHHHHHHHHHHHTTTCCTTEEEEECS
T ss_pred             ChHHHHHHHHHHHhhCCCCCEEEECC
Confidence            64434443332    33344444443

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=96.95  E-value=0.004  Score=46.07  Aligned_cols=104  Identities=17%  Similarity=0.149  Sum_probs=53.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .++.+||-+|+|. |..+..+++.. +. +++++|.+++..+.+++.-......+.-...|+.+.+.... .....+|+|
T Consensus        29 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~fD~i  105 (215)
T 4dzr_A           29 PSGTRVIDVGTGS-GCIAVSIALACPGV-SVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERA-ERGRPWHAI  105 (215)
T ss_dssp             CTTEEEEEEESSB-CHHHHHHHHHCTTE-EEEEEECC-------------------CCHHHHHHHHHHHH-HTTCCBSEE
T ss_pred             CCCCEEEEecCCH-hHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhh-hccCcccEE
Confidence            7888999999864 66777777775 34 69999999988777654321111011122234333222110 123679999


Q ss_pred             EEcCCC--------------------------------HHHHHHHHHHhhcCCEEEEecc
Q 048013          173 FDCAGF--------------------------------NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       173 i~~~g~--------------------------------~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      +.+..-                                ...++.+.+.|+|+|+++.+..
T Consensus       106 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  165 (215)
T 4dzr_A          106 VSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV  165 (215)
T ss_dssp             EECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred             EECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            974210                                2344556678999999554443

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=96.94  E-value=0.00044  Score=56.64  Aligned_cols=107  Identities=17%  Similarity=0.155  Sum_probs=70.3

Q ss_pred             HHHHHHHHcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh-------H-----HHHHHHHcCCCEEEeCCC
Q 048013           83 VGVHACRRANI-GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD-------Y-----RLSVAKKLGADNIVKVST  149 (216)
Q Consensus        83 ~a~~~l~~~~~-~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~-------~-----~~~~~~~~g~~~~~~~~~  149 (216)
                      .-+++++..+. -++.+|+|+|+|..|..+++++..+|+++|+++|++-       +     +..+++....     . .
T Consensus       174 all~al~l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~-----~-~  247 (398)
T 2a9f_A          174 AIFNSLKLLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNR-----E-F  247 (398)
T ss_dssp             HHHHHHHTTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSC-----T-T
T ss_pred             HHHHHHHHhCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCc-----c-c
Confidence            33555654432 3556899999999999999999999998899998862       1     1112221110     0 0


Q ss_pred             CcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          150 NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      ...++.+.++        +.|++|.+++.....++.++.|+++-.++.++.+.+
T Consensus       248 ~~~~L~eav~--------~ADV~IG~Sapgl~T~EmVk~Ma~~pIIfalsNPt~  293 (398)
T 2a9f_A          248 KSGTLEDALE--------GADIFIGVSAPGVLKAEWISKMAARPVIFAMANPIP  293 (398)
T ss_dssp             CCCSCSHHHH--------TTCSEEECCSTTCCCHHHHHTSCSSCEEEECCSSSC
T ss_pred             chhhHHHHhc--------cCCEEEecCCCCCCCHHHHHhhCCCCEEEECCCCCc
Confidence            1122222221        479999998853455889999999999998887664

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.93  E-value=0.006  Score=49.20  Aligned_cols=101  Identities=17%  Similarity=0.269  Sum_probs=62.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHHH-HcCCCE--EEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVAK-KLGADN--IVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~~-~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      -.+++|||+|+ |.+|..+++.+... |...|+++++++.+.+.+. ++....  .+..+-  .+. +.+.++    -.+
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl--~d~-~~l~~~----~~~   91 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDV--RDL-ERLNYA----LEG   91 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCT--TCH-HHHHHH----TTT
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCC--CCH-HHHHHH----Hhc
Confidence            35689999996 99999999888888 9745999999987765543 343221  222221  121 223333    137


Q ss_pred             ccEEEEcCCCHH-----------------HHHHHHHHhhcC--CEEEEeccC
Q 048013          169 IDVSFDCAGFNK-----------------TMSTALSATRAG--GKVCLVGMG  201 (216)
Q Consensus       169 ~d~vi~~~g~~~-----------------~~~~~~~~l~~~--G~~v~~g~~  201 (216)
                      +|+||.+++...                 ....+++.+.+.  ++++.++..
T Consensus        92 ~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~  143 (344)
T 2gn4_A           92 VDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTD  143 (344)
T ss_dssp             CSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCG
T ss_pred             CCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCC
Confidence            999999997411                 113344454443  588888753

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=96.92  E-value=0.0046  Score=47.71  Aligned_cols=81  Identities=17%  Similarity=0.173  Sum_probs=50.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC-hHHHHHHHH----cCCCE-EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVD-DYRLSVAKK----LGADN-IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~-~~~~~~~~~----~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      .++++||+|+ |++|..+++.+...|++ |++++++ ++..+.+++    .+... .+..+- +.++..+.+.++.+.. 
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~-   83 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGYS-VTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHF-   83 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCCE-EEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHh-
Confidence            3578999996 89999999999999995 7776444 444444433    22221 222222 2233444455544333 


Q ss_pred             CCccEEEEcCC
Q 048013          167 TGIDVSFDCAG  177 (216)
Q Consensus       167 ~~~d~vi~~~g  177 (216)
                      .++|++|.++|
T Consensus        84 g~id~lv~~Ag   94 (264)
T 3i4f_A           84 GKIDFLINNAG   94 (264)
T ss_dssp             SCCCEEECCCC
T ss_pred             CCCCEEEECCc
Confidence            37999999999

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=96.92  E-value=0.0026  Score=51.94  Aligned_cols=87  Identities=23%  Similarity=0.288  Sum_probs=63.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .|+++.|+|.|.+|..+++.++.+|++ |++.+++. +.+.+.+.|...        .++    .++.    ...|+|+-
T Consensus       175 ~gktvGIIGlG~IG~~vA~~l~~fG~~-V~~~d~~~-~~~~~~~~g~~~--------~~l----~ell----~~aDvV~l  236 (365)
T 4hy3_A          175 AGSEIGIVGFGDLGKALRRVLSGFRAR-IRVFDPWL-PRSMLEENGVEP--------ASL----EDVL----TKSDFIFV  236 (365)
T ss_dssp             SSSEEEEECCSHHHHHHHHHHTTSCCE-EEEECSSS-CHHHHHHTTCEE--------CCH----HHHH----HSCSEEEE
T ss_pred             CCCEEEEecCCcccHHHHHhhhhCCCE-EEEECCCC-CHHHHhhcCeee--------CCH----HHHH----hcCCEEEE
Confidence            378999999999999999999999995 99998875 334455566531        122    2221    25899998


Q ss_pred             cCCCHH----HH-HHHHHHhhcCCEEEEec
Q 048013          175 CAGFNK----TM-STALSATRAGGKVCLVG  199 (216)
Q Consensus       175 ~~g~~~----~~-~~~~~~l~~~G~~v~~g  199 (216)
                      ++....    .+ ...+..|++++.++.++
T Consensus       237 ~~Plt~~T~~li~~~~l~~mk~gailIN~a  266 (365)
T 4hy3_A          237 VAAVTSENKRFLGAEAFSSMRRGAAFILLS  266 (365)
T ss_dssp             CSCSSCC---CCCHHHHHTSCTTCEEEECS
T ss_pred             cCcCCHHHHhhcCHHHHhcCCCCcEEEECc
Confidence            877421    12 56778899999999887

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=96.91  E-value=0.0054  Score=47.23  Aligned_cols=82  Identities=9%  Similarity=0.120  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHH---cCCCeEEEEcCChHHHHHH-HHc-----CCCE-EEeCCC-CcccHHHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARA---FGAPRIVIVDVDDYRLSVA-KKL-----GADN-IVKVST-NLQDIAEEVEKIQ  162 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~---~g~~~vv~~~~~~~~~~~~-~~~-----g~~~-~~~~~~-~~~~~~~~~~~~~  162 (216)
                      .++++||+|+ |++|..+++.+..   .|++ |+++++++++.+.+ +++     +... .+..+- +.++..+.+.++.
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   83 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGSV-MLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVR   83 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCE-EEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCCe-EEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence            4678899986 8999999988887   7984 99999998776543 222     3221 222221 2223333444443


Q ss_pred             HH-cCCCcc--EEEEcCC
Q 048013          163 KA-MGTGID--VSFDCAG  177 (216)
Q Consensus       163 ~~-~~~~~d--~vi~~~g  177 (216)
                      +. ..+++|  ++|+++|
T Consensus        84 ~~~~~g~~d~~~lvnnAg  101 (259)
T 1oaa_A           84 ELPRPEGLQRLLLINNAA  101 (259)
T ss_dssp             HSCCCTTCCEEEEEECCC
T ss_pred             hccccccCCccEEEECCc
Confidence            20 123578  9999887

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=96.91  E-value=0.0058  Score=44.35  Aligned_cols=103  Identities=16%  Similarity=0.254  Sum_probs=67.1

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCE--EEeCCCCcccHHHHHHH
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADN--IVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~--~~~~~~~~~~~~~~~~~  160 (216)
                      .++....+++++||.+|+|. |..+..+++. +. .++++|.+++..+.+++    .+...  +.....   ++.+.   
T Consensus        44 l~~~~~~~~~~~vLdiG~G~-G~~~~~~~~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~---d~~~~---  114 (194)
T 1dus_A           44 LVENVVVDKDDDILDLGCGY-GVIGIALADE-VK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHS---DLYEN---  114 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEEC---STTTT---
T ss_pred             HHHHcccCCCCeEEEeCCCC-CHHHHHHHHc-CC-eEEEEECCHHHHHHHHHHHHHcCCCccceEEEEC---chhcc---
Confidence            34556677889999999864 6677777776 66 59999999988776654    24332  221111   11110   


Q ss_pred             HHHHcCCCccEEEEcCCC-------HHHHHHHHHHhhcCCEEEEeccC
Q 048013          161 IQKAMGTGIDVSFDCAGF-------NKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~-------~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                         .....+|+|+....-       ...++.+.+.|+|+|++++....
T Consensus       115 ---~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  159 (194)
T 1dus_A          115 ---VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             ---CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             ---cccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence               013479999976541       24567788899999999877643

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=96.91  E-value=0.0011  Score=50.66  Aligned_cols=99  Identities=17%  Similarity=0.213  Sum_probs=58.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHH-cCCCeEEEEcCChH-HHHHHHHcCCCEEEeCCCC-cccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARA-FGAPRIVIVDVDDY-RLSVAKKLGADNIVKVSTN-LQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~-~g~~~vv~~~~~~~-~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .++++||+|+ +++|.++++.+.. .|. +|+..+++++ ..+.      ...+..+-. .++..+.++.+   ...++|
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~-~v~~~~~~~~~~~~~------~~~~~~Dv~~~~~v~~~~~~~---~~~~id   72 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNH-TVINIDIQQSFSAEN------LKFIKADLTKQQDITNVLDII---KNVSFD   72 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTE-EEEEEESSCCCCCTT------EEEEECCTTCHHHHHHHHHHT---TTCCEE
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCc-EEEEecccccccccc------ceEEecCcCCHHHHHHHHHHH---HhCCCC
Confidence            4678999996 8999998877776 676 5888877754 2111      122222222 22233333221   234799


Q ss_pred             EEEEcCCCH----------H---------------HHHHHHHHhhcCCEEEEeccCCC
Q 048013          171 VSFDCAGFN----------K---------------TMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       171 ~vi~~~g~~----------~---------------~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      ++++++|..          +               ..+.+++.++.+|+++.++....
T Consensus        73 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~  130 (244)
T 4e4y_A           73 GIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQC  130 (244)
T ss_dssp             EEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGG
T ss_pred             EEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHH
Confidence            999999851          1               12333344555689998875443

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=96.91  E-value=0.006  Score=43.93  Aligned_cols=101  Identities=13%  Similarity=0.115  Sum_probs=62.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCC-EEEeCCCCcccHHHHHHHHHHHcCC
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGAD-NIVKVSTNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~  167 (216)
                      ..++++||-+|+|. |..++.+++. +...++++|.+++..+.+++    .+.. .+..+.   .++.+.+.    ....
T Consensus        29 ~~~~~~vLDlGcG~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~~----~~~~   99 (177)
T 2esr_A           29 YFNGGRVLDLFAGS-GGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK---MEAERAID----CLTG   99 (177)
T ss_dssp             CCCSCEEEEETCTT-CHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEEC---SCHHHHHH----HBCS
T ss_pred             hcCCCeEEEeCCCC-CHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEE---CcHHHhHH----hhcC
Confidence            56788999999864 6666666765 55579999999988777654    3432 222211   23333222    2345


Q ss_pred             CccEEEEcCCC-----HHHHHHHH--HHhhcCCEEEEeccCC
Q 048013          168 GIDVSFDCAGF-----NKTMSTAL--SATRAGGKVCLVGMGH  202 (216)
Q Consensus       168 ~~d~vi~~~g~-----~~~~~~~~--~~l~~~G~~v~~g~~~  202 (216)
                      .+|+|+....-     ...++...  +.|+|+|++++.-...
T Consensus       100 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  141 (177)
T 2esr_A          100 RFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKT  141 (177)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             CCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence            69999976432     12334444  6789999988764333

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.90  E-value=0.0072  Score=48.15  Aligned_cols=99  Identities=15%  Similarity=0.061  Sum_probs=60.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-----cCCC-EEE-eCCCCcccHHHHHHHHHHHc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-----LGAD-NIV-KVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-----~g~~-~~~-~~~~~~~~~~~~~~~~~~~~  165 (216)
                      .++++|||+|+ |.+|..+++.+...|++ |++++++.++.+.+.+     .+.. ..+ ..+-.+.+   .+.++    
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~---~~~~~----   80 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYK-VRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQG---AYDEV----   80 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTT---TTTTT----
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChH---HHHHH----
Confidence            45789999996 99999999998888984 8989898776554432     1222 112 11111111   12221    


Q ss_pred             CCCccEEEEcCCCH--------------HHHHHHHHHhhc---CCEEEEecc
Q 048013          166 GTGIDVSFDCAGFN--------------KTMSTALSATRA---GGKVCLVGM  200 (216)
Q Consensus       166 ~~~~d~vi~~~g~~--------------~~~~~~~~~l~~---~G~~v~~g~  200 (216)
                      -.++|+||.+++..              .....+++.+.+   .++++.++.
T Consensus        81 ~~~~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS  132 (342)
T 1y1p_A           81 IKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS  132 (342)
T ss_dssp             TTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred             HcCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence            13799999998741              122345555542   368888874

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.90  E-value=0.00053  Score=52.27  Aligned_cols=99  Identities=10%  Similarity=0.042  Sum_probs=62.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCC---CEEEeCCCCcccHHHHHHHHHHHcCCCc
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGA---DNIVKVSTNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      .+++.+||-+|+|. |..+..+++ .+...++++|.+++-++.+++...   ..+..+   ..++.+....   .....|
T Consensus        58 ~~~~~~vLDiGcGt-G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~---~~d~~~~~~~---~~~~~f  129 (236)
T 1zx0_A           58 SSKGGRVLEVGFGM-AIAASKVQE-APIDEHWIIECNDGVFQRLRDWAPRQTHKVIPL---KGLWEDVAPT---LPDGHF  129 (236)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHHT-SCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEE---ESCHHHHGGG---SCTTCE
T ss_pred             CCCCCeEEEEeccC-CHHHHHHHh-cCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEE---ecCHHHhhcc---cCCCce
Confidence            56788999999874 666666654 344369999999998887765321   222221   1233221111   123579


Q ss_pred             cEEEE-cCC----CH------HHHHHHHHHhhcCCEEEEec
Q 048013          170 DVSFD-CAG----FN------KTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       170 d~vi~-~~g----~~------~~~~~~~~~l~~~G~~v~~g  199 (216)
                      |+|+. ...    ..      ..++.+.+.|+|+|+++++-
T Consensus       130 D~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          130 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             EEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence            99987 222    11      23678899999999998764

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=96.90  E-value=0.011  Score=46.42  Aligned_cols=74  Identities=22%  Similarity=0.153  Sum_probs=51.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAG  177 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  177 (216)
                      +|.|+|+|.+|...+..+...|.+ |++.++++++.+.+.+.|...   .    .+..+.+.        ..|+||-++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~-V~~~~~~~~~~~~~~~~g~~~---~----~~~~~~~~--------~~Dvvi~~vp   65 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYP-LIIYDVFPDACKEFQDAGEQV---V----SSPADVAE--------KADRIITMLP   65 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCC-EEEECSSTHHHHHHHTTTCEE---C----SSHHHHHH--------HCSEEEECCS
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHcCCee---c----CCHHHHHh--------cCCEEEEeCC
Confidence            578899999999999988888985 899999998888777665431   1    12221111        3788888886


Q ss_pred             CHHHHHHHHH
Q 048013          178 FNKTMSTALS  187 (216)
Q Consensus       178 ~~~~~~~~~~  187 (216)
                      .+...+..+.
T Consensus        66 ~~~~~~~v~~   75 (296)
T 2gf2_A           66 TSINAIEAYS   75 (296)
T ss_dssp             SHHHHHHHHH
T ss_pred             CHHHHHHHHh
Confidence            6455555544

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=96.89  E-value=0.0049  Score=45.65  Aligned_cols=98  Identities=15%  Similarity=0.265  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCC----EEEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGAD----NIVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      +.++.+||.+|+|. |..+..+++. |...++++|.++...+.+++....    ..+.-+.  .+       + ......
T Consensus        40 ~~~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~--~~-------~-~~~~~~  107 (215)
T 2pxx_A           40 LRPEDRILVLGCGN-SALSYELFLG-GFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDV--RK-------L-DFPSAS  107 (215)
T ss_dssp             CCTTCCEEEETCTT-CSHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCT--TS-------C-CSCSSC
T ss_pred             cCCCCeEEEECCCC-cHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcch--hc-------C-CCCCCc
Confidence            57889999999875 7777777765 543599999999988888664221    1222111  11       0 012356


Q ss_pred             ccEEEEcCC---------------------CHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          169 IDVSFDCAG---------------------FNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       169 ~d~vi~~~g---------------------~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +|+|+....                     ....++.+.+.|+|+|++++.....
T Consensus       108 fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          108 FDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             EEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            999996321                     1356678889999999999876543

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=96.88  E-value=0.004  Score=47.69  Aligned_cols=101  Identities=21%  Similarity=0.182  Sum_probs=68.1

Q ss_pred             HHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHHHHcCCC-EEEeCCCCcccHHHHHHHHHH
Q 048013           86 HACRRANIGPETNVLIMGSGPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVAKKLGAD-NIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        86 ~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ..++.....++.+||.+|+|. |..+..+++.. +. .++++|.+++..+.+++.... ..+.-+  ..+       +. 
T Consensus        24 ~l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~d--~~~-------~~-   91 (259)
T 2p35_A           24 DLLAQVPLERVLNGYDLGCGP-GNSTELLTDRYGVN-VITGIDSDDDMLEKAADRLPNTNFGKAD--LAT-------WK-   91 (259)
T ss_dssp             HHHTTCCCSCCSSEEEETCTT-THHHHHHHHHHCTT-SEEEEESCHHHHHHHHHHSTTSEEEECC--TTT-------CC-
T ss_pred             HHHHhcCCCCCCEEEEecCcC-CHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHhCCCcEEEECC--hhh-------cC-
Confidence            444556677889999999874 77777777775 55 499999999988888764222 222211  111       10 


Q ss_pred             HcCCCccEEEEcCC-----C-HHHHHHHHHHhhcCCEEEEec
Q 048013          164 AMGTGIDVSFDCAG-----F-NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       164 ~~~~~~d~vi~~~g-----~-~~~~~~~~~~l~~~G~~v~~g  199 (216)
                       ....||+|+....     + ...++.+.+.|+|+|++++.-
T Consensus        92 -~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A           92 -PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             -CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             -ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence             2356999997553     2 345677888999999998764

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.88  E-value=0.022  Score=43.01  Aligned_cols=73  Identities=22%  Similarity=0.329  Sum_probs=47.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCC-CcccHHHHHHHHHHHcCCCccEEE
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      ++++||+|+ |++|..+++.+...|++ |++++++.+    .+++   ..+..+- +.+++.+.++++ +.. .++|++|
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~-V~~~~r~~~----~~~~---~~~~~D~~~~~~~~~~~~~~-~~~-~~~d~li   71 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYR-VVVLDLRRE----GEDL---IYVEGDVTREEDVRRAVARA-QEE-APLFAVV   71 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEESSCC----SSSS---EEEECCTTCHHHHHHHHHHH-HHH-SCEEEEE
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEccCcc----ccce---EEEeCCCCCHHHHHHHHHHH-Hhh-CCceEEE
Confidence            578999996 99999999988888985 888888764    1111   2222222 223334444444 222 3799999


Q ss_pred             EcCCC
Q 048013          174 DCAGF  178 (216)
Q Consensus       174 ~~~g~  178 (216)
                      .++|.
T Consensus        72 ~~ag~   76 (242)
T 1uay_A           72 SAAGV   76 (242)
T ss_dssp             ECCCC
T ss_pred             Ecccc
Confidence            98873

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.87  E-value=0.0012  Score=52.13  Aligned_cols=84  Identities=20%  Similarity=0.186  Sum_probs=58.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .+++|.|+|.|.+|..+++.++.+|++ |++.+++.++.+.      ..  ..    .+..+.+.        ..|+|+-
T Consensus       121 ~g~tvGIIGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~~~~------~~--~~----~~l~ell~--------~aDiV~l  179 (290)
T 3gvx_A          121 YGKALGILGYGGIGRRVAHLAKAFGMR-VIAYTRSSVDQNV------DV--IS----ESPADLFR--------QSDFVLI  179 (290)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCE-EEEECSSCCCTTC------SE--EC----SSHHHHHH--------HCSEEEE
T ss_pred             ecchheeeccCchhHHHHHHHHhhCcE-EEEEecccccccc------cc--cc----CChHHHhh--------ccCeEEE
Confidence            478999999999999999999999995 9999887644321      11  10    12222221        3788888


Q ss_pred             cCCCHH----H-HHHHHHHhhcCCEEEEec
Q 048013          175 CAGFNK----T-MSTALSATRAGGKVCLVG  199 (216)
Q Consensus       175 ~~g~~~----~-~~~~~~~l~~~G~~v~~g  199 (216)
                      ++....    . ....+..|+++..++.+|
T Consensus       180 ~~P~t~~t~~li~~~~l~~mk~gailIN~a  209 (290)
T 3gvx_A          180 AIPLTDKTRGMVNSRLLANARKNLTIVNVA  209 (290)
T ss_dssp             CCCCCTTTTTCBSHHHHTTCCTTCEEEECS
T ss_pred             EeeccccchhhhhHHHHhhhhcCceEEEee
Confidence            877411    1 145677788888888877

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=96.87  E-value=0.013  Score=49.69  Aligned_cols=100  Identities=18%  Similarity=0.258  Sum_probs=65.0

Q ss_pred             cCCC--CCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHHH----HcCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           91 ANIG--PETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVAK----KLGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        91 ~~~~--~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ..++  ++++||-.|+|+ |..++.++..++ -..|+++|.++++.+.++    ++|...+.....+..++.    .   
T Consensus       111 L~~~~~~g~~VLDl~aGp-G~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~----~---  182 (479)
T 2frx_A          111 LFADGNAPQRVMDVAAAP-GSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFG----A---  182 (479)
T ss_dssp             HTTTTCCCSEEEESSCTT-SHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHH----H---
T ss_pred             hCcccCCCCEEEEeCCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhh----h---
Confidence            3445  899999998765 666777777764 236999999999877664    357654433222222211    1   


Q ss_pred             HcCCCccEEEE---cCCC-------------------------HHHHHHHHHHhhcCCEEEEe
Q 048013          164 AMGTGIDVSFD---CAGF-------------------------NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       164 ~~~~~~d~vi~---~~g~-------------------------~~~~~~~~~~l~~~G~~v~~  198 (216)
                      .....||.|+-   |+|.                         ...+..+++.|+|+|+++..
T Consensus       183 ~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~Lvys  245 (479)
T 2frx_A          183 AVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYS  245 (479)
T ss_dssp             HSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            12356999886   4432                         13467788899999999864

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=96.87  E-value=0.0037  Score=49.79  Aligned_cols=34  Identities=12%  Similarity=0.115  Sum_probs=28.8

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           95 PETNVLIMGS---GPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        95 ~~~~vlv~Ga---g~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      .++++||+|+   +++|.++++.+...|++ |++++++
T Consensus         8 ~gk~~lVTGa~~s~GIG~aia~~la~~G~~-Vv~~~r~   44 (315)
T 2o2s_A            8 RGQTAFVAGVADSHGYGWAIAKHLASAGAR-VALGTWP   44 (315)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHTTTCE-EEEEECH
T ss_pred             CCCEEEEeCCCCCCChHHHHHHHHHHCCCE-EEEEecc
Confidence            5789999985   79999999999989995 8888764

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=96.87  E-value=0.0021  Score=50.02  Aligned_cols=95  Identities=12%  Similarity=0.132  Sum_probs=58.6

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc--CCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           98 NVLIMGS-GPIGLVTMLAARAF--GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~--g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      +|||+|+ |.+|..+++.+...  |++ |++++++.++.+.+...+...+ ..+-.  +. +.+.+.    -.++|+||.
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~-V~~~~r~~~~~~~~~~~~~~~~-~~D~~--d~-~~~~~~----~~~~d~vi~   71 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQ-IVAIVRNPAKAQALAAQGITVR-QADYG--DE-AALTSA----LQGVEKLLL   71 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGG-EEEEESCTTTCHHHHHTTCEEE-ECCTT--CH-HHHHHH----TTTCSEEEE
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCce-EEEEEcChHhhhhhhcCCCeEE-EcCCC--CH-HHHHHH----HhCCCEEEE
Confidence            4789996 99999999988877  885 8888888776555544444332 22211  21 223332    236899999


Q ss_pred             cCCCH-----HHHHHHHHHhhcC--CEEEEeccC
Q 048013          175 CAGFN-----KTMSTALSATRAG--GKVCLVGMG  201 (216)
Q Consensus       175 ~~g~~-----~~~~~~~~~l~~~--G~~v~~g~~  201 (216)
                      +++..     .....+++.+...  ++++.++..
T Consensus        72 ~a~~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~  105 (286)
T 2zcu_A           72 ISSSEVGQRAPQHRNVINAAKAAGVKFIAYTSLL  105 (286)
T ss_dssp             CC--------CHHHHHHHHHHHHTCCEEEEEEET
T ss_pred             eCCCCchHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence            98752     1335555655443  588888753

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=96.85  E-value=0.003  Score=53.06  Aligned_cols=104  Identities=18%  Similarity=0.248  Sum_probs=66.4

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHHH----HcCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVAK----KLGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ....++++++||..|+|+ |..+..++..++- ..++++|.++++.+.++    .+|...+.....+..+..   ..   
T Consensus       253 ~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~---~~---  325 (450)
T 2yxl_A          253 IVLDPKPGETVVDLAAAP-GGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAP---EI---  325 (450)
T ss_dssp             HHHCCCTTCEEEESSCTT-CHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCS---SS---
T ss_pred             HhcCCCCcCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcc---hh---
Confidence            445678999999998875 6677777777642 36999999998877664    357654332222111110   00   


Q ss_pred             HcCCCccEEEE---cCCC-------------------------HHHHHHHHHHhhcCCEEEEec
Q 048013          164 AMGTGIDVSFD---CAGF-------------------------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       164 ~~~~~~d~vi~---~~g~-------------------------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ..+..||.|+.   |+|.                         ...+..+++.|+|+|+++..-
T Consensus       326 ~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~t  389 (450)
T 2yxl_A          326 IGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTT  389 (450)
T ss_dssp             SCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            01246999986   3332                         245677888899999998643

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=96.85  E-value=0.0044  Score=49.19  Aligned_cols=45  Identities=16%  Similarity=0.189  Sum_probs=39.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCC
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGAD  142 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~  142 (216)
                      ++|-++|.|.||...+.-+...|+. |++.+++.++.+.+.+.|+.
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~-v~v~dr~~~~~~~l~~~Ga~   48 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYL-LNVFDLVQSAVDGLVAAGAS   48 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCE-EEEECSSHHHHHHHHHTTCE
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCe-EEEEcCCHHHHHHHHHcCCE
Confidence            4788999999999988888888985 99999999999988777764

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=96.85  E-value=0.0037  Score=44.72  Aligned_cols=99  Identities=13%  Similarity=0.174  Sum_probs=67.2

Q ss_pred             HcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCc
Q 048013           90 RANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        90 ~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      ...++++.+||.+|+|. |..+..+++...  +++++|.+++..+.+++......+.. .   +        .......+
T Consensus        12 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~-~---d--------~~~~~~~~   76 (170)
T 3i9f_A           12 NIFEGKKGVIVDYGCGN-GFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLS-D---P--------KEIPDNSV   76 (170)
T ss_dssp             HHHSSCCEEEEEETCTT-CTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEES-S---G--------GGSCTTCE
T ss_pred             hcCcCCCCeEEEECCCC-CHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEe-C---C--------CCCCCCce
Confidence            34467888999999875 667777777653  69999999998888876522211111 1   1        01134579


Q ss_pred             cEEEEcCCC------HHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          170 DVSFDCAGF------NKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       170 d~vi~~~g~------~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      |+|+....-      ...++.+.+.|+|+|++++......
T Consensus        77 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  116 (170)
T 3i9f_A           77 DFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKE  116 (170)
T ss_dssp             EEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             EEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence            999875432      3567889999999999998865443

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.84  E-value=0.0044  Score=48.73  Aligned_cols=75  Identities=13%  Similarity=0.233  Sum_probs=50.4

Q ss_pred             CCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc----CCCEE-EeCCCCcccHHHHHHHHHHHcC
Q 048013           94 GPETNVLIMG-SGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL----GADNI-VKVSTNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        94 ~~~~~vlv~G-ag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~----g~~~~-~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      .++++++|+| +|++|.+++..+...|++ |++++++.++.+.+ +++    +.... .+..    +. +.+.+.    -
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~-V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~----~~-~~~~~~----~  186 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGRKLDKAQAAADSVNKRFKVNVTAAETA----DD-ASRAEA----V  186 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHHHTCCCEEEECC----SH-HHHHHH----T
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEecCC----CH-HHHHHH----H
Confidence            4678999999 699999999999999995 88999998775543 333    32221 2221    11 123332    1


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      ..+|++|++++.
T Consensus       187 ~~~DvlVn~ag~  198 (287)
T 1lu9_A          187 KGAHFVFTAGAI  198 (287)
T ss_dssp             TTCSEEEECCCT
T ss_pred             HhCCEEEECCCc
Confidence            248999999973

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.84  E-value=0.0042  Score=49.08  Aligned_cols=44  Identities=14%  Similarity=0.208  Sum_probs=38.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCC
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGA  141 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~  141 (216)
                      .+|.|+|+|.+|...++.+...|.+ |++.++++++.+.+.+.|.
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~~~~~g~   59 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPGG-VTVYDIRIEAMTPLAEAGA   59 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTTC-EEEECSSTTTSHHHHHTTC
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHCCC
Confidence            5799999999999999999888986 9999999998887777665

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=96.83  E-value=0.0042  Score=49.82  Aligned_cols=33  Identities=27%  Similarity=0.202  Sum_probs=26.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      ++++||+|+ |++|..+++.+...|++ ++.+.++
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~~-v~~v~r~   35 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPSQ-SFKVYAT   35 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTC-CEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCc-eEEEEee
Confidence            568899996 89999999999999986 5555443

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=96.83  E-value=0.0047  Score=49.23  Aligned_cols=34  Identities=18%  Similarity=0.212  Sum_probs=28.4

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           95 PETNVLIMGS---GPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        95 ~~~~vlv~Ga---g~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      .++++||+|+   +++|.++++.+...|++ |++++++
T Consensus         8 ~~k~~lVTGa~~s~GIG~aia~~la~~G~~-Vv~~~r~   44 (319)
T 2ptg_A            8 RGKTAFVAGVADSNGYGWAICKLLRAAGAR-VLVGTWP   44 (319)
T ss_dssp             TTCEEEEECCCCTTSHHHHHHHHHHHTTCE-EEEEECH
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHCCCE-EEEEecc
Confidence            4688999985   79999999999999995 8887654

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=96.83  E-value=0.0031  Score=48.15  Aligned_cols=98  Identities=15%  Similarity=0.195  Sum_probs=61.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHH--HcC
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQK--AMG  166 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~--~~~  166 (216)
                      ++++.+||-+|+|. |..++.+++......|+++|.+++..+.+++    .+...+..+.   .+..    ++..  ...
T Consensus        68 ~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~---~d~~----~~~~~~~~~  139 (240)
T 1xdz_A           68 FNQVNTICDVGAGA-GFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCH---DRAE----TFGQRKDVR  139 (240)
T ss_dssp             GGGCCEEEEECSSS-CTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEE---SCHH----HHTTCTTTT
T ss_pred             cCCCCEEEEecCCC-CHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEe---ccHH----Hhccccccc
Confidence            35788999999863 6566666665432369999999987776644    4554332221   2222    2210  013


Q ss_pred             CCccEEEEcCCC--HHHHHHHHHHhhcCCEEEEe
Q 048013          167 TGIDVSFDCAGF--NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       167 ~~~d~vi~~~g~--~~~~~~~~~~l~~~G~~v~~  198 (216)
                      ..||+|+...-.  ...++.+.+.|+|+|++++.
T Consensus       140 ~~fD~V~~~~~~~~~~~l~~~~~~LkpgG~l~~~  173 (240)
T 1xdz_A          140 ESYDIVTARAVARLSVLSELCLPLVKKNGLFVAL  173 (240)
T ss_dssp             TCEEEEEEECCSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCccEEEEeccCCHHHHHHHHHHhcCCCCEEEEE
Confidence            579998864432  34557777899999999876

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=96.83  E-value=0.0035  Score=50.54  Aligned_cols=87  Identities=17%  Similarity=0.171  Sum_probs=60.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .++++.|+|.|.+|..+++.++.+|++ |++.+++.++.  +++. ..    +.   .+..    ++.    ...|+|+.
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~~~~~~--~~~~-~~----~~---~~l~----ell----~~aDvV~l  205 (333)
T 1j4a_A          145 RDQVVGVVGTGHIGQVFMQIMEGFGAK-VITYDIFRNPE--LEKK-GY----YV---DSLD----DLY----KQADVISL  205 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCHH--HHHT-TC----BC---SCHH----HHH----HHCSEEEE
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCE-EEEECCCcchh--HHhh-Ce----ec---CCHH----HHH----hhCCEEEE
Confidence            467999999999999999999999995 99999887654  2332 22    11   1222    221    14799999


Q ss_pred             cCCCHHH----H-HHHHHHhhcCCEEEEecc
Q 048013          175 CAGFNKT----M-STALSATRAGGKVCLVGM  200 (216)
Q Consensus       175 ~~g~~~~----~-~~~~~~l~~~G~~v~~g~  200 (216)
                      ++.....    + ...+..|++++.++.+|-
T Consensus       206 ~~p~~~~t~~li~~~~l~~mk~ga~lIn~ar  236 (333)
T 1j4a_A          206 HVPDVPANVHMINDESIAKMKQDVVIVNVSR  236 (333)
T ss_dssp             CSCCCGGGTTCBSHHHHHHSCTTEEEEECSC
T ss_pred             cCCCcHHHHHHHhHHHHhhCCCCcEEEECCC
Confidence            8885221    1 456778899988888874

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=96.83  E-value=0.0093  Score=46.16  Aligned_cols=87  Identities=9%  Similarity=0.063  Sum_probs=58.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEc
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC  175 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  175 (216)
                      .+|.|+|+|.+|...++.+...|.+.|.+.++++++.+.+.+ ++....-   + .+       +    .-...|+||.+
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~---~-~~-------~----~~~~~Dvvi~a   75 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTT---D-LA-------E----VNPYAKLYIVS   75 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEES---C-GG-------G----SCSCCSEEEEC
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeC---C-HH-------H----HhcCCCEEEEe
Confidence            479999999999999988888898657888999888776644 5654211   1 10       1    12368999999


Q ss_pred             CCCHHHHHHHHHHhh----cCCEEEEec
Q 048013          176 AGFNKTMSTALSATR----AGGKVCLVG  199 (216)
Q Consensus       176 ~g~~~~~~~~~~~l~----~~G~~v~~g  199 (216)
                      +.... ....++.+.    ++..++.+.
T Consensus        76 v~~~~-~~~v~~~l~~~~~~~~ivv~~s  102 (266)
T 3d1l_A           76 LKDSA-FAELLQGIVEGKREEALMVHTA  102 (266)
T ss_dssp             CCHHH-HHHHHHHHHTTCCTTCEEEECC
T ss_pred             cCHHH-HHHHHHHHHhhcCCCcEEEECC
Confidence            99843 355554443    445555553

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.82  E-value=0.009  Score=47.85  Aligned_cols=92  Identities=20%  Similarity=0.288  Sum_probs=56.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .++++|||+|+ |.+|..+++.+...|++ |++++++..+      .+...+. .+-.  +. +.+.++.    .++|+|
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~------~~~~~~~-~Dl~--d~-~~~~~~~----~~~d~v   81 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRT-VRGFDLRPSG------TGGEEVV-GSLE--DG-QALSDAI----MGVSAV   81 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCC-EEEEESSCCS------SCCSEEE-SCTT--CH-HHHHHHH----TTCSEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCE-EEEEeCCCCC------CCccEEe-cCcC--CH-HHHHHHH----hCCCEE
Confidence            45678999996 99999999999999986 8888887654      2333322 1111  21 2233332    279999


Q ss_pred             EEcCCCH---------------HHHHHHHHHhhcC--CEEEEecc
Q 048013          173 FDCAGFN---------------KTMSTALSATRAG--GKVCLVGM  200 (216)
Q Consensus       173 i~~~g~~---------------~~~~~~~~~l~~~--G~~v~~g~  200 (216)
                      |.+++..               .....+++.+...  ++++.++.
T Consensus        82 ih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS  126 (347)
T 4id9_A           82 LHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASS  126 (347)
T ss_dssp             EECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             EECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence            9988741               1223455555444  48888775

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.81  E-value=0.0023  Score=51.91  Aligned_cols=89  Identities=20%  Similarity=0.288  Sum_probs=60.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .++++.|+|.|.+|..+++.++.+|++ |++.+++.++ ...+++|....       .+..    ++.    ...|+|+-
T Consensus       167 ~g~tvGIIG~G~IG~~vA~~l~~~G~~-V~~~d~~~~~-~~~~~~g~~~~-------~~l~----ell----~~aDvV~l  229 (347)
T 1mx3_A          167 RGETLGIIGLGRVGQAVALRAKAFGFN-VLFYDPYLSD-GVERALGLQRV-------STLQ----DLL----FHSDCVTL  229 (347)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECTTSCT-THHHHHTCEEC-------SSHH----HHH----HHCSEEEE
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCE-EEEECCCcch-hhHhhcCCeec-------CCHH----HHH----hcCCEEEE
Confidence            578999999999999999999999995 8888876543 23345565321       1222    221    13788888


Q ss_pred             cCCCHH----HH-HHHHHHhhcCCEEEEecc
Q 048013          175 CAGFNK----TM-STALSATRAGGKVCLVGM  200 (216)
Q Consensus       175 ~~g~~~----~~-~~~~~~l~~~G~~v~~g~  200 (216)
                      ++....    .+ ...+..|+++..++.++-
T Consensus       230 ~~P~t~~t~~li~~~~l~~mk~gailIN~ar  260 (347)
T 1mx3_A          230 HCGLNEHNHHLINDFTVKQMRQGAFLVNTAR  260 (347)
T ss_dssp             CCCCCTTCTTSBSHHHHTTSCTTEEEEECSC
T ss_pred             cCCCCHHHHHHhHHHHHhcCCCCCEEEECCC
Confidence            776421    12 456677888888887763

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=96.80  E-value=0.014  Score=47.01  Aligned_cols=85  Identities=15%  Similarity=0.168  Sum_probs=57.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHH-HHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYR-LSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      +.+|.|+|+|.+|.+.++.++..|.+ |++.+++.++ .+.+++.|....        +..+.+        ...|+|+-
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~-V~~~~~~~~~~~~~a~~~G~~~~--------~~~e~~--------~~aDvVil   78 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVD-VTVGLRSGSATVAKAEAHGLKVA--------DVKTAV--------AAADVVMI   78 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCC-EEEECCTTCHHHHHHHHTTCEEE--------CHHHHH--------HTCSEEEE
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCE-EEEEECChHHHHHHHHHCCCEEc--------cHHHHH--------hcCCEEEE
Confidence            35799999999999999999999986 8888887655 667777776321        111111        15899999


Q ss_pred             cCCCHHHHHHHHH-----HhhcCCEEEEe
Q 048013          175 CAGFNKTMSTALS-----ATRAGGKVCLV  198 (216)
Q Consensus       175 ~~g~~~~~~~~~~-----~l~~~G~~v~~  198 (216)
                      ++.... ....++     .++++..++..
T Consensus        79 avp~~~-~~~v~~~~i~~~l~~~~ivi~~  106 (338)
T 1np3_A           79 LTPDEF-QGRLYKEEIEPNLKKGATLAFA  106 (338)
T ss_dssp             CSCHHH-HHHHHHHHTGGGCCTTCEEEES
T ss_pred             eCCcHH-HHHHHHHHHHhhCCCCCEEEEc
Confidence            998733 344444     34455555543

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.79  E-value=0.008  Score=50.47  Aligned_cols=75  Identities=12%  Similarity=0.115  Sum_probs=49.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-HcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      +++|+|+|+|.+|..+++.+...|.+ |++++++.++.+.+. +++....+..+.  .+. +.+.++.    .++|+|++
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~~-V~v~~R~~~~a~~la~~~~~~~~~~~Dv--~d~-~~l~~~l----~~~DvVIn   74 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGIK-VTVACRTLESAKKLSAGVQHSTPISLDV--NDD-AALDAEV----AKHDLVIS   74 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCE-EEEEESSHHHHHHTTTTCTTEEEEECCT--TCH-HHHHHHH----TTSSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCE-EEEEECCHHHHHHHHHhcCCceEEEeec--CCH-HHHHHHH----cCCcEEEE
Confidence            56899999999999999988888975 888999987765443 333222222221  122 1233332    26999999


Q ss_pred             cCCC
Q 048013          175 CAGF  178 (216)
Q Consensus       175 ~~g~  178 (216)
                      +++.
T Consensus        75 ~a~~   78 (450)
T 1ff9_A           75 LIPY   78 (450)
T ss_dssp             CCC-
T ss_pred             CCcc
Confidence            9986

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.78  E-value=0.00057  Score=53.71  Aligned_cols=101  Identities=11%  Similarity=0.086  Sum_probs=61.7

Q ss_pred             HHHHHcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHH
Q 048013           86 HACRRANI-GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        86 ~~l~~~~~-~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      .+++.... ..+++++|+|+|++|.+++..+...|++.|++++|+.++.+.+.+ .. ...       .+. .+.+.   
T Consensus       106 ~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~-~~-~~~-------~~~-~~~~~---  172 (277)
T 3don_A          106 NGLKQIYEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSL-NI-NKI-------NLS-HAESH---  172 (277)
T ss_dssp             HHHHHHSTTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCS-CC-EEE-------CHH-HHHHT---
T ss_pred             HHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-hc-ccc-------cHh-hHHHH---
Confidence            34543332 357899999999999999999999999558899999876443321 11 111       111 12221   


Q ss_pred             cCCCccEEEEcCCCHHHHHH-----HHHHhhcCCEEEEeccC
Q 048013          165 MGTGIDVSFDCAGFNKTMST-----ALSATRAGGKVCLVGMG  201 (216)
Q Consensus       165 ~~~~~d~vi~~~g~~~~~~~-----~~~~l~~~G~~v~~g~~  201 (216)
                       -..+|+||++++. .....     -...++++..++.+...
T Consensus       173 -~~~aDiVInaTp~-Gm~~~~~~~l~~~~l~~~~~V~D~vY~  212 (277)
T 3don_A          173 -LDEFDIIINTTPA-GMNGNTDSVISLNRLASHTLVSDIVYN  212 (277)
T ss_dssp             -GGGCSEEEECCC--------CCSSCCTTCCSSCEEEESCCS
T ss_pred             -hcCCCEEEECccC-CCCCCCcCCCCHHHcCCCCEEEEecCC
Confidence             2368999999885 21111     12346677777877654

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=96.78  E-value=0.021  Score=43.06  Aligned_cols=100  Identities=19%  Similarity=0.281  Sum_probs=65.2

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCC-EEEeCCCCcccHHHHHHHHHHHcCC
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGAD-NIVKVSTNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~  167 (216)
                      +.....++.+||-+|+|. |..+..+++. |...++++|.+++..+.+++.... .+.....   +..    ++. ....
T Consensus        37 ~~~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~---d~~----~~~-~~~~  106 (243)
T 3bkw_A           37 AMLPEVGGLRIVDLGCGF-GWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDTGITYERA---DLD----KLH-LPQD  106 (243)
T ss_dssp             HHSCCCTTCEEEEETCTT-CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCSSSEEEEEC---CGG----GCC-CCTT
T ss_pred             HhccccCCCEEEEEcCcC-CHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcccCCceEEEc---Chh----hcc-CCCC
Confidence            344556889999999875 6666666665 664699999999988888775432 1111111   111    100 1245


Q ss_pred             CccEEEEcCCC------HHHHHHHHHHhhcCCEEEEe
Q 048013          168 GIDVSFDCAGF------NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       168 ~~d~vi~~~g~------~~~~~~~~~~l~~~G~~v~~  198 (216)
                      .+|+|+....-      ...++.+.+.|+|+|++++.
T Consensus       107 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  143 (243)
T 3bkw_A          107 SFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFS  143 (243)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEE
Confidence            69999875431      35678889999999999865

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=96.77  E-value=0.0094  Score=45.47  Aligned_cols=101  Identities=16%  Similarity=0.134  Sum_probs=59.4

Q ss_pred             HcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHH----HHHcCCCEEEeCCCCcccHHHHHHHHHHH
Q 048013           90 RANIGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSV----AKKLGADNIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        90 ~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      ...++++++||-+|+|+ |..+..+++..| -..|+++|.++...+.    +++.  .++..+..+..... ...    .
T Consensus        71 ~~~l~~g~~VLDlG~Gt-G~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~-~~~----~  142 (232)
T 3id6_C           71 TNPIRKGTKVLYLGAAS-GTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQ-SYK----S  142 (232)
T ss_dssp             CCSCCTTCEEEEETCTT-SHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGG-GTT----T
T ss_pred             hcCCCCCCEEEEEeecC-CHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccch-hhh----c
Confidence            35689999999999865 556777777655 2369999999876532    2332  12211111111100 000    1


Q ss_pred             cCCCccEEEEcCCCHH---HHH-HHHHHhhcCCEEEEe
Q 048013          165 MGTGIDVSFDCAGFNK---TMS-TALSATRAGGKVCLV  198 (216)
Q Consensus       165 ~~~~~d~vi~~~g~~~---~~~-~~~~~l~~~G~~v~~  198 (216)
                      ....+|+|+.....++   .+. .+.+.|+|+|++++.
T Consensus       143 ~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          143 VVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             TCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccceEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEE
Confidence            1347999987665432   222 334489999999865

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.77  E-value=0.012  Score=47.33  Aligned_cols=36  Identities=33%  Similarity=0.542  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      .+.+|+|+|+|++|..+++.+...|..++..+|.+.
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            467899999999999999999999999888887653

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.77  E-value=0.0071  Score=45.93  Aligned_cols=74  Identities=16%  Similarity=0.045  Sum_probs=48.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHc--CCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAF--GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~--g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      .+++|||+|+ |.+|..+++.+...  |+ +|++++++.++.+.+ .-+... +..+-.  + .+.+.++.    .++|+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~-~V~~~~r~~~~~~~~-~~~~~~-~~~D~~--d-~~~~~~~~----~~~d~   72 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKEKI-GGEADV-FIGDIT--D-ADSINPAF----QGIDA   72 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC-EEEEEESCHHHHHHT-TCCTTE-EECCTT--S-HHHHHHHH----TTCSE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc-EEEEEEcCCCchhhc-CCCeeE-EEecCC--C-HHHHHHHH----cCCCE
Confidence            4678999996 99999999999888  67 589999987665433 112222 221111  2 12333332    26999


Q ss_pred             EEEcCCC
Q 048013          172 SFDCAGF  178 (216)
Q Consensus       172 vi~~~g~  178 (216)
                      +|.+++.
T Consensus        73 vi~~a~~   79 (253)
T 1xq6_A           73 LVILTSA   79 (253)
T ss_dssp             EEECCCC
T ss_pred             EEEeccc
Confidence            9998873

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=96.77  E-value=0.011  Score=44.81  Aligned_cols=103  Identities=17%  Similarity=0.186  Sum_probs=67.4

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHH
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~  162 (216)
                      .++...++++.+||.+|+|. |..+..+++. +. .++++|.+++..+.+++    .+...+.....+.++.        
T Consensus        13 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--------   81 (239)
T 1xxl_A           13 MIKTAECRAEHRVLDIGAGA-GHTALAFSPY-VQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL--------   81 (239)
T ss_dssp             HHHHHTCCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC--------
T ss_pred             HHHHhCcCCCCEEEEEccCc-CHHHHHHHHh-CC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccC--------
Confidence            34566788999999999875 7677777665 44 69999999887776643    3433222111111111        


Q ss_pred             HHcCCCccEEEEcCCC------HHHHHHHHHHhhcCCEEEEecc
Q 048013          163 KAMGTGIDVSFDCAGF------NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~------~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      ......||+|+....-      ...+..+.+.|+|+|++++...
T Consensus        82 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  125 (239)
T 1xxl_A           82 PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH  125 (239)
T ss_dssp             CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            0123579999976332      3567889999999999988753

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.76  E-value=0.016  Score=45.08  Aligned_cols=90  Identities=13%  Similarity=0.085  Sum_probs=62.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      .+|||+|+|.+|..+++.+...|.+ |++++++..+.+.+...+...+. .+-  .++.          -.++|+||.++
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~-~D~--~d~~----------~~~~d~vi~~a   71 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWR-IIGTSRNPDQMEAIRASGAEPLL-WPG--EEPS----------LDGVTHLLIST   71 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCE-EEEEESCGGGHHHHHHTTEEEEE-SSS--SCCC----------CTTCCEEEECC
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCE-EEEEEcChhhhhhHhhCCCeEEE-ecc--cccc----------cCCCCEEEECC
Confidence            5799999999999999999888984 99999998887777665554332 221  1211          24799999999


Q ss_pred             CCH----HHHHHHHHHhhc----CCEEEEecc
Q 048013          177 GFN----KTMSTALSATRA----GGKVCLVGM  200 (216)
Q Consensus       177 g~~----~~~~~~~~~l~~----~G~~v~~g~  200 (216)
                      +..    ...+..++.++.    -.+++.++.
T Consensus        72 ~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss  103 (286)
T 3ius_A           72 APDSGGDPVLAALGDQIAARAAQFRWVGYLST  103 (286)
T ss_dssp             CCBTTBCHHHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             CccccccHHHHHHHHHHHhhcCCceEEEEeec
Confidence            742    233555555543    258887763

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=96.76  E-value=0.012  Score=47.08  Aligned_cols=99  Identities=17%  Similarity=0.150  Sum_probs=65.1

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARA-FGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~-~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      +....++.++++|+|+|.+|...+..++. .+.++|.+.+++ +..+++++    +|......      +..+.+.    
T Consensus       114 ~~La~~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~------~~~eav~----  182 (313)
T 3hdj_A          114 GALARPRSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMA------APADIAA----  182 (313)
T ss_dssp             HHHSCTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEEC------CHHHHHH----
T ss_pred             HhhccCCCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEe------CHHHHHh----
Confidence            33445677899999999999988877765 467789999998 44444443    45542211      2222222    


Q ss_pred             HcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          164 AMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                          +.|+|+.|++....+ .-...++|+..++.+|...+
T Consensus       183 ----~aDIVi~aT~s~~pv-l~~~~l~~G~~V~~vGs~~p  217 (313)
T 3hdj_A          183 ----QADIVVTATRSTTPL-FAGQALRAGAFVGAIGSSLP  217 (313)
T ss_dssp             ----HCSEEEECCCCSSCS-SCGGGCCTTCEEEECCCSST
T ss_pred             ----hCCEEEEccCCCCcc-cCHHHcCCCcEEEECCCCCC
Confidence                499999999873211 01246888889999996544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	216
d1pl8a2	171	c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh	3e-24
d1e3ja2	170	c.2.1.1 (A:143-312) Ketose reductase (sorbitol deh	3e-22
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	8e-18
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	1e-15
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	2e-15
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	4e-15
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	6e-14
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	2e-13
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	2e-12
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	4e-12
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	5e-12
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	8e-12
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	2e-11
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	5e-11
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	1e-10
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	1e-10
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	7e-10
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	7e-10
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	3e-09
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	4e-09
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	5e-09
d1h2ba2	172	c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo	2e-08
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	5e-08
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	6e-08
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	9e-08
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	1e-07
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	6e-07
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	6e-06
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	8e-06
d1tt7a1	162	b.35.1.2 (A:2-127,A:295-330) Hypothetical protein	2e-05
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-04
d1uufa2	168	c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc	3e-04
d1piwa2	168	c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase	0.001

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.2 bits (228), Expect = 3e-24
 Identities = 60/143 (41%), Positives = 90/143 (62%), Gaps = 2/143 (1%)

Query: 70  VSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD 129
           V+ EEGA+ EPLSVG+HACRR  +     VL+ G+GPIG+VT+L A+A GA ++V+ D+ 
Sbjct: 1   VTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS 60

Query: 130 DYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSAT 189
             RLS AK++GAD ++++S           + Q  +G   +V+ +C G   ++   + AT
Sbjct: 61  ATRLSKAKEIGADLVLQISKESPQEIARKVEGQ--LGCKPEVTIECTGAEASIQAGIYAT 118

Query: 190 RAGGKVCLVGMGHREMTVPLTPA 212
           R+GG + LVG+G    TVPL  A
Sbjct: 119 RSGGTLVLVGLGSEMTTVPLLHA 141

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 86.9 bits (214), Expect = 3e-22
 Identities = 68/143 (47%), Positives = 96/143 (67%), Gaps = 1/143 (0%)

Query: 70  VSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD 129
           VSLEEGA+ EPLSVGVHACRRA +   T VL++G+GPIGLV++LAA+A+GA  +      
Sbjct: 1   VSLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTAR-S 59

Query: 130 DYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSAT 189
             RL VAK  GAD  + V    ++ +  +E+I+ A+G   +V+ DC+G  K ++  ++ T
Sbjct: 60  PRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINIT 119

Query: 190 RAGGKVCLVGMGHREMTVPLTPA 212
           R GG + LVGMG + +TVPL  A
Sbjct: 120 RTGGTLMLVGMGSQMVTVPLVNA 142

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (185), Expect = 8e-18
 Identities = 41/107 (38%), Positives = 50/107 (46%), Gaps = 2/107 (1%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD 61
           VGS VK L PGDRVA+EPG      ++CK GRYNL P      +PP  G L     H A 
Sbjct: 78  VGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAA 137

Query: 62  LCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIG 108
            C+KLPDNV         PL   + A      G    +++    P  
Sbjct: 138 FCYKLPDNVKPLV-THRFPLEKALEAFETFKKGLGLKIML-KCDPSD 182

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 70.3 bits (171), Expect = 1e-15
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 16/118 (13%)

Query: 15  VALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHG---------CLANQVVHPAD--LC 63
           V++   ++C +C  CK     +C       +   +G           A  V+ P      
Sbjct: 88  VSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNL 147

Query: 64  FKLPDNVS-LEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA 120
            KLPD    +E+  + E + V V +   A  G         +G      +   + F A
Sbjct: 148 LKLPDRDKAMEKINIAEVVGVQVISLDDAPRGYG----EFDAGVPKKFVIDPHKTFSA 201

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 69.5 bits (169), Expect = 2e-15
 Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 19/153 (12%)

Query: 76  AMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV 135
            + + L  G H    A +GP + V + G+GP+GL    +AR  GA  +++ D++  RL+ 
Sbjct: 6   CLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAH 65

Query: 136 AKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGF---------------NK 180
           AK  G +      +    + E++  +       +D + D  GF                 
Sbjct: 66  AKAQGFEIA--DLSLDTPLHEQIAALL--GEPEVDCAVDAVGFEARGHGHEGAKHEAPAT 121

Query: 181 TMSTALSATRAGGKVCLVGMGHREMTVPLTPAA 213
            +++ +  TR  GK+ + G+   E    +  AA
Sbjct: 122 VLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAA 154

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 68.4 bits (166), Expect = 4e-15
 Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 5/145 (3%)

Query: 70  VSLEEGAM-CEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDV 128
           + LE   M  + ++ G H    A+I   ++V+++G G +GL+ +  A+  GA RI+ V  
Sbjct: 1   MPLENAVMITDMMTTGFHGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS 60

Query: 129 DDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSA 188
               +  AK  GA +I     N ++   E + ++   G G+D      G ++T+S A+  
Sbjct: 61  RPICVEAAKFYGATDI----LNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKM 116

Query: 189 TRAGGKVCLVGMGHREMTVPLTPAA 213
            + GG +  +        + +    
Sbjct: 117 VKPGGIISNINYHGSGDALLIPRVE 141

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 65.7 bits (159), Expect = 6e-14
 Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 12/119 (10%)

Query: 3   GSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADL 62
           G+ V  + PGD+V       C  C  CK    N C ++       +   + ++       
Sbjct: 77  GAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKP 136

Query: 63  CFKLPDNVSLEEGAMCEPLSVGV------------HACRRANIGPETNVLIMGSGPIGL 109
            + L    +  E  +   ++V                     I     +L  G G   +
Sbjct: 137 IYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTLDQINKAFELLSSGQGVRSI 195

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 64.1 bits (155), Expect = 2e-13
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 14/93 (15%)

Query: 18  EPGISCWQCDYCK-GGRYNLCPESKGLG-------SPPVHGCLANQ-VVHPADLCFKLPD 68
             GI+C +C +CK      LCP  K  G        P + GC ++  V+ P     K+ +
Sbjct: 94  NRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSE 153

Query: 69  NVSLEEGAMCEPLSVGVHACRRANIGPETNVLI 101
            ++        PL     A           V++
Sbjct: 154 KITHR-----LPLKEANKALELMESREALKVIL 181

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 61.2 bits (147), Expect = 2e-12
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 3/99 (3%)

Query: 4   SEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLC 63
             V+ L  GD V L P ++   C  C+ G    C   +  G     G  A  +       
Sbjct: 74  EGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGF-AEFMRTSHRSV 132

Query: 64  FKLPDNVSLEEGA-MCEPLSVGVHACRRANIGPETNVLI 101
            KLP +V +E      + ++  +    +  +     VLI
Sbjct: 133 IKLPKDVRVEVDIHKLDEINDVLERLEKGEVLGRA-VLI 170

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 60.0 bits (144), Expect = 4e-12
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 10/97 (10%)

Query: 6   VKTLVPGDRVALEPGISCW-QCDYCKGGRYNLCPESKGLGSPP-------VHGCLANQVV 57
           V+   PGD V +   +     C+ C+ G  N C    G  + P         G  + Q+V
Sbjct: 73  VEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIV 132

Query: 58  HPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIG 94
                  ++       E    + ++       R ++ 
Sbjct: 133 VHERYVLRIRVA--DIEMIRADQINEAYERMLRGDVK 167

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.2 bits (145), Expect = 5e-12
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 8/99 (8%)

Query: 11  PGDRVALEPG-ISCWQCDYCKGGRYNLCPESKGLGSPPV------HGCLANQVVHPADLC 63
            G RV +     SC +CD CK      C +     S P        G  AN V       
Sbjct: 87  VGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFV 146

Query: 64  FKLPDNVSLEEGAMCEP-LSVGVHACRRANIGPETNVLI 101
             +P+N+ +E   + E  +        + ++     ++ 
Sbjct: 147 VPIPENIWVETLPVGEAGVHEAFERMEKGDVRYRFTLVG 185

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 59.2 bits (142), Expect = 8e-12
 Identities = 44/104 (42%), Positives = 58/104 (55%), Gaps = 1/104 (0%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPAD 61
           VG  VK L  GDRVA+EPG+ C +C +CK G+YNLCP+     +PP  G LA   VH AD
Sbjct: 72  VGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAAD 131

Query: 62  LCFKLPDNVSLEEGAMC-EPLSVGVHACRRANIGPETNVLIMGS 104
            C KLPDN ++++       L   V A   A    +  + +M S
Sbjct: 132 FCHKLPDNCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMIS 175

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 58.0 bits (139), Expect = 2e-11
 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 10/138 (7%)

Query: 79  EPLSVGVH-----ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRL 133
            PL  G+            + P ++ +  G+G +GL  +LAA+  GA  I+ VD+ + RL
Sbjct: 7   GPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRL 66

Query: 134 SVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGG 193
            +AK+LGA +++   T      + V  I++    G++ + +  G  + +   + A    G
Sbjct: 67  ELAKQLGATHVINSKTQ-----DPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILG 121

Query: 194 KVCLVGMGHREMTVPLTP 211
           K+ +VG      T     
Sbjct: 122 KIAVVGAPQLGTTAQFDV 139

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 57.3 bits (137), Expect = 5e-11
 Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 4/104 (3%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCW-QCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHP 59
           +VG  V  L  GDRV +    S    CDYC  G+  LC   K      V G  A      
Sbjct: 69  EVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKN-AGYSVDGGYAEYCRAA 127

Query: 60  ADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMG 103
           AD   K+PDN  +E     E ++       +  I     VL + 
Sbjct: 128 ADYVVKIPDNTIIEV-QPLEKINEVFDRMLKGQINGRV-VLTLE 169

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 56.5 bits (135), Expect = 1e-10
 Identities = 24/124 (19%), Positives = 37/124 (29%), Gaps = 22/124 (17%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVH----------- 49
            VG  V    PG++V       C +C +C+  + N C +     SP V            
Sbjct: 76  SVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKG 135

Query: 50  ---------GCLANQVVHPADLCFKLPDNVSLEEGA-MCEPLSVGVHAC-RRANIGPETN 98
                       +   V       K+  +V L+E      PL     A     +      
Sbjct: 136 RKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRT 195

Query: 99  VLIM 102
           VL +
Sbjct: 196 VLSL 199

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 55.7 bits (133), Expect = 1e-10
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 4/104 (3%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCW-QCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHP 59
            VGS V  +  GDRV +    +    C++C  G   LC   +      V+G  A  V+  
Sbjct: 74  AVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQN-TGYSVNGGYAEYVLAD 132

Query: 60  ADLCFKLPDNVSLEEGA-MCEPLSVGVHACRRANIGPETNVLIM 102
            +    LP NV         + ++  +   R   I     VL M
Sbjct: 133 PNYVGILPKNVKATIHPGKLDDINQILDQMRAGQIEGRI-VLEM 175

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 54.2 bits (129), Expect = 7e-10
 Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 4/92 (4%)

Query: 12  GDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA-DLCFKLPDNV 70
           GD VA+ P      C YC+ G  +LC   + LG     G  A  V+ P     +KL    
Sbjct: 87  GDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGIN-FDGAYAEYVIVPHYKYMYKLRRVK 145

Query: 71  SLEEGAM-CEPLSVGVHACRRANIGPETNVLI 101
            +    M  E  +  +             VLI
Sbjct: 146 PMITKTMKLEEANEAIDNLENFKAIGRQ-VLI 176

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 53.7 bits (128), Expect = 7e-10
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 6/127 (4%)

Query: 87  ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVK 146
           A   A + P +   + G G +G   ++  +A GA RI+ V     +   A +LGA   + 
Sbjct: 19  AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECL- 77

Query: 147 VSTNLQDIAEEVEKIQKAMGT-GIDVSFDCAGFNKTMSTALSATRA-GGKVCLVGMGHRE 204
              N +D  + + ++       G+D + +CAG  +TM  AL +T    G   ++G+    
Sbjct: 78  ---NPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPN 134

Query: 205 MTVPLTP 211
             +PL P
Sbjct: 135 ERLPLDP 141

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 3e-09
 Identities = 27/134 (20%), Positives = 59/134 (44%), Gaps = 7/134 (5%)

Query: 81  LSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL 139
            S G  A  +   + P +  ++ G G +GL  ++  ++ GA RI+ +D++  +   A  +
Sbjct: 14  FSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV 73

Query: 140 GADNIVKVSTNLQDIAEEVEKIQKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVC-L 197
           GA   +    + +D  + + ++   M    +  +F+  G  +TM  AL++         +
Sbjct: 74  GATECI----SPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVV 129

Query: 198 VGMGHREMTVPLTP 211
           VG+      +   P
Sbjct: 130 VGVPPSAKMLTYDP 143

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 51.9 bits (123), Expect = 4e-09
 Identities = 31/145 (21%), Positives = 60/145 (41%), Gaps = 1/145 (0%)

Query: 68  DNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVD 127
           D++ +   AMC   +                V+I G+GP+GL  ++ AR+ GA  ++++ 
Sbjct: 1   DDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIA 60

Query: 128 VDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALS 187
               RL +A+++GAD  +       +   +   +    G G D   +  G ++ +     
Sbjct: 61  GSPNRLKLAEEIGADLTLNRRETSVEERRK-AIMDITHGRGADFILEATGDSRALLEGSE 119

Query: 188 ATRAGGKVCLVGMGHREMTVPLTPA 212
             R GG   + G+   +  VP    
Sbjct: 120 LLRRGGFYSVAGVAVPQDPVPFKVY 144

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 52.2 bits (124), Expect = 5e-09
 Identities = 18/129 (13%), Positives = 35/129 (27%), Gaps = 29/129 (22%)

Query: 2   VGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPV------------- 48
           VG  V    PGD+V       C +C  C     NLC + +    P +             
Sbjct: 76  VGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFT 135

Query: 49  -----------HGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRA--NIGP 95
                          +   V       ++ D   L+        ++   +   A   +  
Sbjct: 136 CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLV---THALPFESINDAIDLMKE 192

Query: 96  ETNVLIMGS 104
             ++  + +
Sbjct: 193 GKSIRTILT 201

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 49.9 bits (118), Expect = 2e-08
 Identities = 31/145 (21%), Positives = 62/145 (42%), Gaps = 11/145 (7%)

Query: 70  VSLEEGAMCEPLSVGV----HACRRA--NIGPETNVLIMGSGPIGLVTMLAARAFGAPRI 123
           +S E+     PL+        A ++A   + P   V I+G G +G + +   +      +
Sbjct: 1   ISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATV 60

Query: 124 VIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMS 183
           + +DV + +L +A++LGAD++V    +          ++   G G++V+ D  G   T+ 
Sbjct: 61  IALDVKEEKLKLAERLGADHVVDARRDPVKQ-----VMELTRGRGVNVAMDFVGSQATVD 115

Query: 184 TALSATRAGGKVCLVGMGHREMTVP 208
                    G++ +VG G       
Sbjct: 116 YTPYLLGRMGRLIIVGYGGELRFPT 140

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 5e-08
 Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 12/146 (8%)

Query: 72  LEEGAMCEPLSVGVH-----ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIV 126
           L++      L  G+      A   A + P +   + G G +GL  ++  +  GA RI+ V
Sbjct: 3   LDKVC---LLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGV 59

Query: 127 DVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTAL 186
           D++  + + AK+ GA   +      + I    E + +    G+D SF+C G  K M  AL
Sbjct: 60  DINKDKFARAKEFGATECINPQDFSKPI---QEVLIEMTDGGVDYSFECIGNVKVMRAAL 116

Query: 187 SATRAG-GKVCLVGMGHREMTVPLTP 211
            A   G G   +VG+      +   P
Sbjct: 117 EACHKGWGVSVVVGVAASGEEIATRP 142

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 48.8 bits (115), Expect = 6e-08
 Identities = 18/128 (14%), Positives = 35/128 (27%), Gaps = 6/128 (4%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPA 60
            +G  V  L  GD V L     C +C  C  G    C E  G       G  +       
Sbjct: 70  AIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFG---RNFSGADSEGNHALC 125

Query: 61  DLCFKLPDNVSLEEGAMCEPLSVGVHACRR--ANIGPETNVLIMGSGPIGLVTMLAARAF 118
                + ++    + +         +   +   +   +  V       I    + + +  
Sbjct: 126 THDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYAFDEINQAAIDSRKGI 185

Query: 119 GAPRIVIV 126
               I+ +
Sbjct: 186 TLKPIIKI 193

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 9e-08
 Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 23/111 (20%)

Query: 1   KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVH----------- 49
            VG  V  L  GD V       C +C +C   + NLC + +      +            
Sbjct: 74  SVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKG 133

Query: 50  ---------GCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRA 91
                       +   V       K+   + ++E       ++      +A
Sbjct: 134 KTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFV---THNLSFDEINKA 181

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 4/126 (3%)

Query: 87  ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVK 146
           A   A + P +   + G G +GL  ++  +  GA RI+ +D++  +   AK LGA + + 
Sbjct: 20  AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLN 79

Query: 147 VSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCL-VGMGHREM 205
                + + + + ++      G+D S DCAG  +T+  A+  T  G   C  VG    EM
Sbjct: 80  PRELDKPVQDVITELTAG---GVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEM 136

Query: 206 TVPLTP 211
           T+P   
Sbjct: 137 TIPTVD 142

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 45.7 bits (107), Expect = 6e-07
 Identities = 19/109 (17%), Positives = 29/109 (26%), Gaps = 13/109 (11%)

Query: 11  PGDRVALEPGISCWQCDYCKGGRYNLCPESKG--LGSPPVHGCLANQVVHPA--DLCFKL 66
           PGDRV +      W+    + G              S    G                 L
Sbjct: 77  PGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVFGEYFHVNDADMNLAIL 136

Query: 67  PDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAA 115
           P +V L +      +  G      A       +L+M   P  L+  +  
Sbjct: 137 PKDVDLSKLVTH--VYHGFDHIEEA-------LLLMKDKPKDLIKAVVI 176

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 42.7 bits (99), Expect = 6e-06
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 3/123 (2%)

Query: 89  RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS 148
             A + P +   + G G +GL  ++   + GA RI+ VD++  +   AK  GA + V  +
Sbjct: 22  NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPN 81

Query: 149 TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVP 208
            + + I    + + K    G+D S +C G    M  AL +   G  V ++        V 
Sbjct: 82  DHSEPI---SQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVA 138

Query: 209 LTP 211
             P
Sbjct: 139 TRP 141

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 42.5 bits (99), Expect = 8e-06
 Identities = 22/122 (18%), Positives = 34/122 (27%), Gaps = 28/122 (22%)

Query: 3   GSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVH------------- 49
           G  V T+ PGD+V       C +C  CK    N C ++                      
Sbjct: 77  GEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKP 136

Query: 50  -------GCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIM 102
                     +   V       K+    +L+      PL   V    +  I    ++L  
Sbjct: 137 IHHFLGTSTFSQYTVVDEISVAKIDAAFALD------PLITHVLPFEK--INEGFDLLRS 188

Query: 103 GS 104
           G 
Sbjct: 189 GE 190

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 2/92 (2%)

Query: 19  PGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC 78
            G      D        +   S  LG     G      V P D    LP N+SL+E  + 
Sbjct: 69  AGTVVSSNDPRFAEGDEVIATSYELGVSRDGGLSEYASV-PGDWLVPLPQNLSLKEAMVD 127

Query: 79  EPLSVGVHACRRANIGPETNVLIMGSGPIGLV 110
           + L++           P     I+ +   G V
Sbjct: 128 QLLTIVDREVSL-EETPGALKDILQNRIQGRV 158

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 14/124 (11%), Positives = 34/124 (27%), Gaps = 15/124 (12%)

Query: 86  HACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIV 145
              ++  +      + +GSG +G   + AA   G       ++ D    +      +   
Sbjct: 207 DVYQQCQLKKGDTFMDLGSG-VGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKK 265

Query: 146 KVSTNLQDIAEEVEKIQKAMGTG--IDVSFDCA------------GFNKTMSTALSATRA 191
           +       +      ++K+      +                     NK +   L   + 
Sbjct: 266 RCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKV 325

Query: 192 GGKV 195
           G K+
Sbjct: 326 GCKI 329

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 38.0 bits (87), Expect = 3e-04
 Identities = 28/132 (21%), Positives = 43/132 (32%), Gaps = 14/132 (10%)

Query: 73  EEGAMCEPLSVGV----HACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDV 128
           E+ A   PL           R    GP   V ++G G +G + +  A A GA  +     
Sbjct: 4   EQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTS 63

Query: 129 DDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSA 188
           +  R   AK LGAD +         +         A     D   +       +    + 
Sbjct: 64  EAKR-EAAKALGADEV---------VNSRNADEMAAHLKSFDFILNTVAAPHNLDDFTTL 113

Query: 189 TRAGGKVCLVGM 200
            +  G + LVG 
Sbjct: 114 LKRDGTMTLVGA 125

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 10/144 (6%)

Query: 70  VSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVD 127
           +     A  +C  L+V      R   GP   V I+G G IG +  L ++A GA   VI  
Sbjct: 1   IPSHLAAPLLCGGLTV-YSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISR 59

Query: 128 VDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALS 187
               R   A K+GAD+         +  +  EK        +  +      +   +    
Sbjct: 60  SSRKR-EDAMKMGADHY----IATLEEGDWGEKYFDTFDLIVVCASSLTDID--FNIMPK 112

Query: 188 ATRAGGKVCLVGMGHREMTVPLTP 211
           A + GG++  + +  +   + L P
Sbjct: 113 AMKVGGRIVSISIPEQHEMLSLKP 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.95
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.95
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.94
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.92
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.91
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.91
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.91
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.91
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.91
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.9
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.9
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.89
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.89
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.89
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.89
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.88
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.88
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.88
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.87
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.87
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.87
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.87
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.86
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.86
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.85
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.83
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.83
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.81
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	99.8
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.79
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.79
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.74
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.69
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.69
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.67
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.66
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	99.65
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.65
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.63
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.63
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.57
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.48
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	99.46
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.45
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.39
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.37
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.29
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.24
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.0
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	98.76
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	98.74
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	98.69
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.68
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	98.66
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.48
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	98.46
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	98.39
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.38
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	98.36
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	98.34
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	98.32
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	98.31
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	98.3
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	98.3
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.3
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	98.29
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	98.29
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	98.27
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	98.26
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	98.26
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.24
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	98.24
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	98.23
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	98.22
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	98.18
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	98.18
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	98.15
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	98.14
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	98.14
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.13
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	98.12
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	98.11
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	98.1
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	98.1
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	98.1
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	98.09
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	98.08
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	98.08
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	98.08
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	98.07
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	98.06
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	98.05
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	98.05
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.04
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	98.04
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	98.04
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	98.03
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	98.02
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.02
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.01
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	98.0
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.98
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.98
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.95
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	97.94
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.93
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	97.92
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.92
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	97.89
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.88
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.87
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.87
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.84
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.83
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	97.82
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.81
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.81
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.8
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	97.8
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.8
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.78
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.77
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.77
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	97.76
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.73
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.73
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	97.72
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	97.71
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	97.71
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	97.67
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.67
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.66
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.63
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.63
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.62
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	97.62
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.62
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.6
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.6
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.59
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.58
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.56
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	97.56
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.54
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.5
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.5
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.48
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	97.45
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	97.43
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.42
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.37
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	97.35
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.34
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	97.24
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.19
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	97.15
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	97.14
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	97.14
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.12
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	97.12
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.12
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.1
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	97.08
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	97.08
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	97.07
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.06
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.06
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	97.01
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	96.98
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.94
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	96.92
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.9
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	96.87
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.86
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.82
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	96.77
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	96.76
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	96.75
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	96.75
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	96.75
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	96.74
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.74
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.74
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	96.72
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	96.69
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	96.68
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	96.68
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	96.67
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	96.61
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	96.6
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.58
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.58
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	96.57
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	96.57
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.56
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	96.48
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.45
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.44
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	96.43
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	96.42
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.41
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	96.39
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	96.38
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	96.37
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	96.32
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.32
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.31
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	96.26
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.25
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.22
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	96.19
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.17
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	96.14
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	96.14
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	96.13
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.09
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.08
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.08
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	96.07
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.07
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	96.05
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	96.04
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	96.03
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	95.97
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.96
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.96
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.92
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	95.9
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	95.83
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	95.77
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	95.72
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	95.7
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	95.69
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.69
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.69
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	95.69
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	95.54
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.53
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	95.52
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.51
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.49
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	95.45
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.42
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	95.42
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.41
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.32
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	95.28
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.25
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	95.24
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	95.23
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.19
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.18
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	95.14
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.12
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.11
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	95.1
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	95.06
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	95.06
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	95.02
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	94.96
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	94.96
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.92
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	94.92
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	94.92
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.9
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	94.9
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.82
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	94.82
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.82
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.82
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	94.78
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	94.67
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.66
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	94.64
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	94.53
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	94.5
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	94.48
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.43
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.41
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	94.4
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	94.36
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	94.36
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.36
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	94.34
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	94.32
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.27
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.24
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	94.2
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.19
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	94.02
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	94.01
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	94.0
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	93.97
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	93.95
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	93.95
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	93.92
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.89
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	93.89
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	93.86
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	93.85
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	93.76
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	93.63
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	93.62
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.61
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.59
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.52
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.49
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	93.47
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	93.45
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	93.43
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	93.39
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	93.33
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.31
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	93.27
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	93.23
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	93.22
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	93.21
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	93.19
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.14
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.12
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	93.12
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	93.09
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	93.09
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	93.05
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	93.03
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.0
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	92.88
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	92.87
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.81
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.71
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.62
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	92.61
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	92.61
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.6
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	92.49
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	92.44
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	92.29
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	92.29
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	92.19
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	92.16
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.11
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	92.1
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	91.99
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	91.94
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	91.88
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	91.86
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	91.84
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	91.81
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.77
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	91.73
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	91.69
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.66
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	91.53
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	91.45
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	91.42
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	91.33
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	91.31
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	91.29
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	91.26
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	91.23
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.21
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	91.19
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	91.17
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	91.13
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	91.12
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	91.08
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	91.05
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	90.96
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	90.88
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	90.73
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.71
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	90.62
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	90.61
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	90.61
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	90.57
d1qopb_	390	Tryptophan synthase, beta-subunit {Salmonella typh	90.51
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	90.46
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.46
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	90.34
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	90.25
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	90.2
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	90.2
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	90.16
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	90.0
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	89.86
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	89.66
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	89.61
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	89.59
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	89.53
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	89.42
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	89.34
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	89.34
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	89.01
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	88.69
d1p5ja_	319	L-serine dehydratase {Human (Homo sapiens) [TaxId:	88.56
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	88.51
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	88.48
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	88.44
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	88.27
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	88.22
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	88.07
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	87.63
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	87.6
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	87.26
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	87.24
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	87.08
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	87.05
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	87.02
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	86.95
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	86.92
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	86.8
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	86.73
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	86.7
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	86.67
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	86.58
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	85.69
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	85.67
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	85.64
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	85.41
d1ve5a1	310	Threonine deaminase {Thermus thermophilus [TaxId:	85.28
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	85.26
d1v7ca_	351	Threonine synthase {Thermus thermophilus [TaxId: 2	85.1
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	84.84
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	84.84
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.75
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	84.73
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.59
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	84.19
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	83.95
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	83.76
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	83.09
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	82.75
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	82.35
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	82.13
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	81.83
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	81.46
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	81.32
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	80.75
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	80.7
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	80.3

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.95  E-value=3.4e-27  Score=173.13  Aligned_cols=145  Identities=48%  Similarity=0.764  Sum_probs=130.3

Q ss_pred             CCchhhhcchhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCC
Q 048013           70 VSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVST  149 (216)
Q Consensus        70 ~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~  149 (216)
                      +++++|++++|++++|++++..+++++++|+|+|+|++|++++|+++.+|+ +|++++++++|+++++++|++..+.++.
T Consensus         1 VS~e~Aal~ePla~a~~a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~~~~~~~   79 (170)
T d1e3ja2           1 VSLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVVDP   79 (170)
T ss_dssp             SCHHHHHTHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEECCT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcCCcEEEeccc
Confidence            478999999999999999999999999999999999999999999999999 5999999999999999999998887666


Q ss_pred             CcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhhc
Q 048013          150 NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAS  215 (216)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~  215 (216)
                      ..++..+..+++.+..+.++|++||++|++..++.++++++++|+++.+|++.++.++++..++.|
T Consensus        80 ~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~k  145 (170)
T d1e3ja2          80 AKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAR  145 (170)
T ss_dssp             TTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCHHHHHTT
T ss_pred             cccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCCCCCCcCHHHHHHC
Confidence            656666666677666788999999999998888999999999999999998887788888887765

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.6e-27  Score=171.73  Aligned_cols=144  Identities=43%  Similarity=0.766  Sum_probs=129.0

Q ss_pred             CCchhhhcchhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCC
Q 048013           70 VSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVST  149 (216)
Q Consensus        70 ~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~  149 (216)
                      +++++|++++|++++||++++.+++++++|+|+|+|++|++++|+++.+|+.+|++++++++|++.++++|++.+++.+.
T Consensus         1 vS~e~Aal~epla~a~~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~   80 (171)
T d1pl8a2           1 VTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISK   80 (171)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccc
Confidence            47899999999999999999999999999999999999999999999999988999999999999999999999888543


Q ss_pred             CcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhhc
Q 048013          150 NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAS  215 (216)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~  215 (216)
                        ++..+..+.+..+.+.++|++||++|++..++.++++++++|+++++|+...+.++++..+++|
T Consensus        81 --~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~~~~~~~~~~~~~k  144 (171)
T d1pl8a2          81 --ESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIR  144 (171)
T ss_dssp             --CCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHHHHHT
T ss_pred             --cccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCCCCCccCHHHHHHC
Confidence              4555555555556788999999999998889999999999999999999888888999888765

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.94  E-value=4.4e-26  Score=167.57  Aligned_cols=135  Identities=26%  Similarity=0.408  Sum_probs=119.0

Q ss_pred             CCchhhhcc-hhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCC
Q 048013           70 VSLEEGAMC-EPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS  148 (216)
Q Consensus        70 ~~~~~aa~~-~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~  148 (216)
                      +++++|+++ ++++|+|++++..+++++++|+|+|+|++|++++|+|+.+|+++|++++++++|++.++++|++.+++++
T Consensus         1 ip~e~A~~l~~~~~ta~~a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~   80 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYK   80 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGG
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCcccccccc
Confidence            468899977 5899999999999999999999999999999999999999997799999999999999999999988754


Q ss_pred             CCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCccc
Q 048013          149 TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVP  208 (216)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~  208 (216)
                        ++++.+.+.++  +.+.|+|++||++|++..++.++++++++|+++.+|.......++
T Consensus        81 --~~~~~~~v~~~--t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~  136 (174)
T d1jqba2          81 --NGHIEDQVMKL--TNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDALL  136 (174)
T ss_dssp             --GSCHHHHHHHH--TTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSSSEEE
T ss_pred             --chhHHHHHHHH--hhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecCCCCcCc
Confidence              45677777776  467889999999998788899999999999999999866544433

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.92  E-value=1.3e-24  Score=159.52  Aligned_cols=141  Identities=28%  Similarity=0.482  Sum_probs=118.8

Q ss_pred             Cchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCC
Q 048013           71 SLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS  148 (216)
Q Consensus        71 ~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~  148 (216)
                      ++++||++. .+.|+|+++ +..++++|++|+|+|+|++|++++|+++.+|+++|++++.+++|+++++++|++.++++.
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~   81 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPR   81 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCc
Confidence            467788665 688999998 678999999999999999999999999999998899999999999999999999998764


Q ss_pred             CCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcC-CEEEEeccCCCCCcccchhhhh
Q 048013          149 TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHREMTVPLTPAAA  214 (216)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~  214 (216)
                      ..++...+....   +.+.|+|++|||+|.+..++.++++++++ |+++++|+...+.+++..++++
T Consensus        82 ~~~~~~~~~~~~---~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~~~~~i~~~~~~~  145 (174)
T d1e3ia2          82 ELDKPVQDVITE---LTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVIL  145 (174)
T ss_dssp             GCSSCHHHHHHH---HHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSEEEEEHHHHHT
T ss_pred             cchhhhhhhHhh---hhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCCCccccchHHHhc
Confidence            433333333322   35789999999999988999999999996 9999999887777777666553

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.1e-24  Score=157.70  Aligned_cols=139  Identities=22%  Similarity=0.329  Sum_probs=118.6

Q ss_pred             CCchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEe
Q 048013           70 VSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVK  146 (216)
Q Consensus        70 ~~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~  146 (216)
                      +++++||.++ ++.|||+++ +..+++++++|||+|+ |++|++++|+|+.+|++ |+++++++++++.++++|++.+++
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~-vi~~~~~~~~~~~~~~~Ga~~vi~   79 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLK-ILGTAGTEEGQKIVLQNGAHEVFN   79 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCcc-cccccccccccccccccCcccccc
Confidence            5788988665 888999998 5678999999999996 99999999999999995 888888999999999999999998


Q ss_pred             CCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhhc
Q 048013          147 VSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAS  215 (216)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~  215 (216)
                      ++  ++++.+.+++.  +.+.++|++||++|+ ..++.++++++++|+++.+|... ..++++..++.|
T Consensus        80 ~~--~~~~~~~i~~~--t~~~g~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~G~~~-~~~~~~~~~~~k  142 (174)
T d1yb5a2          80 HR--EVNYIDKIKKY--VGEKGIDIIIEMLAN-VNLSKDLSLLSHGGRVIVVGSRG-TIEINPRDTMAK  142 (174)
T ss_dssp             TT--STTHHHHHHHH--HCTTCEEEEEESCHH-HHHHHHHHHEEEEEEEEECCCCS-CEEECTHHHHTT
T ss_pred             cc--cccHHHHhhhh--hccCCceEEeecccH-HHHHHHHhccCCCCEEEEEecCC-CCCCCHHHHHHC
Confidence            64  45777777765  468899999999997 78899999999999999999643 467777666653

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.91  E-value=1.9e-23  Score=153.37  Aligned_cols=138  Identities=25%  Similarity=0.423  Sum_probs=114.3

Q ss_pred             chhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCC
Q 048013           72 LEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVST  149 (216)
Q Consensus        72 ~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~  149 (216)
                      |.+||++. .+.|+|+++ +..+++++++|+|+|+|++|++++|+++.+|+++|++++++++|+++++++|++.+++++.
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~   81 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKD   81 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGG
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCC
Confidence            45567554 788999997 6789999999999999999999999999999988999999999999999999999998755


Q ss_pred             CcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhc-CCEEEEeccCCCCCcccchhh
Q 048013          150 NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRA-GGKVCLVGMGHREMTVPLTPA  212 (216)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~-~G~~v~~g~~~~~~~~~~~~~  212 (216)
                      .+....+..+.   +.++++|++||++|........+..+.+ +|+++++|+.....++++.++
T Consensus        82 ~d~~~~~~~~~---~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~  142 (174)
T d1p0fa2          82 YDKPIYEVICE---KTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPL  142 (174)
T ss_dssp             CSSCHHHHHHH---HTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTH
T ss_pred             chhHHHHHHHH---hcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHH
Confidence            43333333333   3577999999999998888888888766 599999998777667776643

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.91  E-value=1.6e-23  Score=153.89  Aligned_cols=140  Identities=24%  Similarity=0.436  Sum_probs=119.3

Q ss_pred             Cchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCC
Q 048013           71 SLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS  148 (216)
Q Consensus        71 ~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~  148 (216)
                      +++.++.+. .+.|+|+++ +..+++++++|+|+|+|++|++++|+++.+|++++++++.+++|+++++++|++++++++
T Consensus         2 P~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~   81 (174)
T d1f8fa2           2 PIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSK   81 (174)
T ss_dssp             CGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETT
T ss_pred             CHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCC
Confidence            456677665 577899997 678899999999999999999999999999998888899999999999999999998864


Q ss_pred             CCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC--CCcccchhhhhc
Q 048013          149 TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR--EMTVPLTPAAAS  215 (216)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~  215 (216)
                        ++++.+.++++   .+.++|++|||+|.+..++.++++++++|+++++|.+..  ..++++..+++|
T Consensus        82 --~~~~~~~i~~~---t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~k  145 (174)
T d1f8fa2          82 --TQDPVAAIKEI---TDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLG  145 (174)
T ss_dssp             --TSCHHHHHHHH---TTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHT
T ss_pred             --CcCHHHHHHHH---cCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecCCCcccccCHHHHHHC
Confidence              35777777765   345899999999998888999999999999999997553  357777777654

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.91  E-value=7e-24  Score=155.23  Aligned_cols=142  Identities=27%  Similarity=0.382  Sum_probs=123.6

Q ss_pred             CCchhhhcch-hhHHHHHHHHHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeC
Q 048013           70 VSLEEGAMCE-PLSVGVHACRRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKV  147 (216)
Q Consensus        70 ~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~  147 (216)
                      +++.+||.++ .+.|+|++++..+++++++|+|+|+ |++|++++++++..|...|++++++++++++++++|++.++++
T Consensus         1 l~~~eAA~l~c~~~Ta~~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~   80 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINA   80 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeecc
Confidence            4678888765 5678999999999999999999995 9999999999999998789999999999999999999998875


Q ss_pred             CCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhhc
Q 048013          148 STNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAS  215 (216)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~  215 (216)
                      +  ++++.+.+.+.  +.+.++|++|||+|++..++.++++++++|+++++|+...+.+++...+++|
T Consensus        81 ~--~~~~~~~~~~~--~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k  144 (170)
T d1jvba2          81 S--MQDPLAEIRRI--TESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLS  144 (170)
T ss_dssp             T--TSCHHHHHHHH--TTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCCCCCHHHHHHH
T ss_pred             C--CcCHHHHHHHH--hhcccchhhhcccccchHHHhhhhhcccCCEEEEeccccCccccCHHHHHhC
Confidence            4  35666665554  4577899999999998888999999999999999999888889998887764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.2e-23  Score=155.59  Aligned_cols=137  Identities=24%  Similarity=0.391  Sum_probs=110.9

Q ss_pred             chhhh-cchhhHHHHHHHH-HcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCC
Q 048013           72 LEEGA-MCEPLSVGVHACR-RANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVST  149 (216)
Q Consensus        72 ~~~aa-~~~~~~~a~~~l~-~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~  149 (216)
                      ++.+| +..+..|+|+++. ..++++|++|||+|+|++|++++|+|+.+|+++|++++++++++++++++|++.++++.+
T Consensus         3 ~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~   82 (182)
T d1vj0a2           3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRE   82 (182)
T ss_dssp             HHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTT
T ss_pred             HHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccc
Confidence            34444 3446779999995 467999999999999999999999999999977999999999999999999999988643


Q ss_pred             CcccHHHHHHHHHH-HcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccch
Q 048013          150 NLQDIAEEVEKIQK-AMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLT  210 (216)
Q Consensus       150 ~~~~~~~~~~~~~~-~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~  210 (216)
                        .+..+..+++.+ +.+.++|+|||++|++..++.++++++++|+++++|+..+..++++.
T Consensus        83 --~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~  142 (182)
T d1vj0a2          83 --TSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFK  142 (182)
T ss_dssp             --SCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEEC
T ss_pred             --cchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeecCCCCccccc
Confidence              344444333333 35778999999999978889999999999999999976554444433

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=2.8e-23  Score=151.44  Aligned_cols=139  Identities=27%  Similarity=0.381  Sum_probs=118.7

Q ss_pred             CCchhhhcch-hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCC
Q 048013           70 VSLEEGAMCE-PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS  148 (216)
Q Consensus        70 ~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~  148 (216)
                      ++++++|.++ ++.|+|++++..+++++++|+|+|+|++|++++|+++.+|+ +|+++++++++++.++++|++.++++.
T Consensus         1 v~f~~aA~l~ca~~Ta~~al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~Ga~~~i~~~   79 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGLKQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLGASLTVNAR   79 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEETT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccCcccccccc
Confidence            4788988665 67899999988999999999999999999999999999998 599999999999999999999988854


Q ss_pred             CCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhhc
Q 048013          149 TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAS  215 (216)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~  215 (216)
                        +++..+.+.+.   . .+.+.+++++++.+.++.++++++++|+++.+|++..+.++++.++++|
T Consensus        80 --~~~~~~~~~~~---~-~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k  140 (166)
T d1llua2          80 --QEDPVEAIQRD---I-GGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLPPGDFPTPIFDVVLK  140 (166)
T ss_dssp             --TSCHHHHHHHH---H-SSEEEEEECCSCHHHHHHHHTTEEEEEEEEECCCCSSEEEEEHHHHHHT
T ss_pred             --chhHHHHHHHh---h-cCCcccccccccchHHHHHHHHhcCCcEEEEEEecCCCccCCHHHHHhC
Confidence              34555555443   2 3577778888887889999999999999999998887788888877754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.90  E-value=1.1e-22  Score=149.41  Aligned_cols=137  Identities=21%  Similarity=0.368  Sum_probs=113.5

Q ss_pred             Cchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCC
Q 048013           71 SLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS  148 (216)
Q Consensus        71 ~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~  148 (216)
                      ++++|+++. .+.|+|+++ +..+++++++|+|+|+|++|++++|.++.+|+.+|+++|.+++|++.++++|++.++++.
T Consensus         3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~   82 (176)
T d1d1ta2           3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPK   82 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECcc
Confidence            478888776 788999998 678899999999999999999999999999988899999999999999999999999865


Q ss_pred             CCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhc-CCEEEEeccCCCCCcccch
Q 048013          149 TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRA-GGKVCLVGMGHREMTVPLT  210 (216)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~-~G~~v~~g~~~~~~~~~~~  210 (216)
                      +.+ +..+.+.+.  +.+.|+|++||++|.....+..+..+.+ +|+++++|++....++++.
T Consensus        83 ~~~-~~~~~~~~~--~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~  142 (176)
T d1d1ta2          83 DST-KPISEVLSE--MTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYD  142 (176)
T ss_dssp             GCS-SCHHHHHHH--HHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEEC
T ss_pred             ccc-hHHHHHHHH--hccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCC
Confidence            322 233334333  4688999999999998777887877755 5999999987765555444

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3.6e-23  Score=152.59  Aligned_cols=136  Identities=23%  Similarity=0.274  Sum_probs=115.4

Q ss_pred             CCchhhhcch-hhHHHHHHHH-HcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEe
Q 048013           70 VSLEEGAMCE-PLSVGVHACR-RANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVK  146 (216)
Q Consensus        70 ~~~~~aa~~~-~~~~a~~~l~-~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~  146 (216)
                      +++++||.++ +..|||+++. ..+++++++|+|+|+ |++|++++|+|+.+|++ |++++++++++++++++|++.+++
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~-Vi~~~~s~~k~~~~~~lGa~~vi~   79 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAK-LIGTVGTAQKAQSALKAGAWQVIN   79 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCE-EEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCe-EeecccchHHHHHHHhcCCeEEEE
Confidence            4789999665 6779999995 568999999999975 88999999999999995 999999999999999999999998


Q ss_pred             CCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC-CCcccchh
Q 048013          147 VSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR-EMTVPLTP  211 (216)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~  211 (216)
                      ++  ++++.+.++++  +.+.++|+++|++++ +.++..+.+++++|+++.+|.... ..++++..
T Consensus        80 ~~--~~d~~~~v~~~--t~g~g~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  140 (179)
T d1qora2          80 YR--EEDLVERLKEI--TGGKKVRVVYDSVGR-DTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGI  140 (179)
T ss_dssp             TT--TSCHHHHHHHH--TTTCCEEEEEECSCG-GGHHHHHHTEEEEEEEEECCCTTCCCCCBCTHH
T ss_pred             CC--CCCHHHHHHHH--hCCCCeEEEEeCccH-HHHHHHHHHHhcCCeeeecccccCCccccchhh
Confidence            64  46888888776  468899999999998 678999999999999999985444 34454443

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.89  E-value=2.1e-23  Score=152.92  Aligned_cols=138  Identities=19%  Similarity=0.225  Sum_probs=112.8

Q ss_pred             CCchhhhcch-hhHHHHHHHH----HcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCE
Q 048013           70 VSLEEGAMCE-PLSVGVHACR----RANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADN  143 (216)
Q Consensus        70 ~~~~~aa~~~-~~~~a~~~l~----~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~  143 (216)
                      +++++||.++ +..|||++++    ..+.+++++|||+|+ |++|.+++|+|+.+|++ |+++.++++|.++++++|++.
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~-Viat~~s~~k~~~~~~lGa~~   79 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYT-VEASTGKAAEHDYLRVLGAKE   79 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCTTCHHHHHHTTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCc-eEEecCchHHHHHHHhcccce
Confidence            5789999887 6678997754    356788999999985 99999999999999996 899999999999999999999


Q ss_pred             EEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC-CCcccchhhhhc
Q 048013          144 IVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR-EMTVPLTPAAAS  215 (216)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~  215 (216)
                      +++++.   ++.+.++   .+.++++|+|||++|+ +.+...+++|+++|+++.+|...+ ..++++.++++|
T Consensus        80 vi~~~~---~~~~~~~---~~~~~gvD~vid~vgg-~~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k  145 (176)
T d1xa0a2          80 VLARED---VMAERIR---PLDKQRWAAAVDPVGG-RTLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILR  145 (176)
T ss_dssp             EEECC---------------CCSCCEEEEEECSTT-TTHHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHT
T ss_pred             eeecch---hHHHHHH---HhhccCcCEEEEcCCc-hhHHHHHHHhCCCceEEEeecccCcccCCCHHHHHHC
Confidence            998643   2222222   2467899999999999 788999999999999999997644 578888888765

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=4.5e-23  Score=150.99  Aligned_cols=134  Identities=22%  Similarity=0.365  Sum_probs=108.3

Q ss_pred             CCchhhhcch-hhHHHHHHHHHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeC
Q 048013           70 VSLEEGAMCE-PLSVGVHACRRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKV  147 (216)
Q Consensus        70 ~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~  147 (216)
                      +++++||.++ ++.|||++++..+++++++|||+|+ |++|++++|+|+.+|++ |+++++++++++.++++|++.++++
T Consensus         1 ls~eeAA~l~~~~~TA~~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~-vi~~~~~~~~~~~~~~lGa~~~i~~   79 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLR-VLAAASRPEKLALPLALGAEEAATY   79 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCE-EEEEESSGGGSHHHHHTTCSEEEEG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccchhhhhhhhcccccc-cccccccccccccccccccceeeeh
Confidence            5789999665 7889999998899999999999996 99999999999999994 8999999999999999999999875


Q ss_pred             CCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC-CCcccchhhhhc
Q 048013          148 STNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR-EMTVPLTPAAAS  215 (216)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~  215 (216)
                      .    +.   ..++  +.+.|+|++||++|.  .+..++++++++|+++.+|+... ..+++...+++|
T Consensus        80 ~----~~---~~~~--~~~~g~D~v~d~~G~--~~~~~~~~l~~~G~~v~~G~~~g~~~~~~~~~~~~k  137 (171)
T d1iz0a2          80 A----EV---PERA--KAWGGLDLVLEVRGK--EVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRR  137 (171)
T ss_dssp             G----GH---HHHH--HHTTSEEEEEECSCT--THHHHHTTEEEEEEEEEC-------CCCCTTHHHHT
T ss_pred             h----hh---hhhh--hccccccccccccch--hHHHHHHHHhcCCcEEEEeCCCCCCCCccHHHHHHC
Confidence            3    22   2233  357789999999885  46889999999999999997654 457777776654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.89  E-value=1.4e-22  Score=148.57  Aligned_cols=138  Identities=25%  Similarity=0.424  Sum_probs=114.6

Q ss_pred             chhhhcc-hhhHHHHHHHHHc--CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCC
Q 048013           72 LEEGAMC-EPLSVGVHACRRA--NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS  148 (216)
Q Consensus        72 ~~~aa~~-~~~~~a~~~l~~~--~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~  148 (216)
                      +.++|.+ .++.|+|++++..  .++++++|+|+|+|++|++++|+++.+|+.+|++++++++|++.++++|++.+++++
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~   85 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR   85 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETT
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCc
Confidence            3455544 4788999999653  579999999999999999999999999988899999999999999999999998864


Q ss_pred             CCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhhc
Q 048013          149 TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAS  215 (216)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~  215 (216)
                      +   +..+.+.+.  +.+.++|++||++|+...++.++++++++|+++++|+.. +.++++.++++|
T Consensus        86 ~---~~~~~~~~~--~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~-~~~~~~~~l~~k  146 (172)
T d1h2ba2          86 R---DPVKQVMEL--TRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYGG-ELRFPTIRVISS  146 (172)
T ss_dssp             S---CHHHHHHHH--TTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCSS-CCCCCHHHHHHT
T ss_pred             c---cHHHHHHHh--hCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCcc-cccCCHHHHHhC
Confidence            3   333333333  467889999999999788899999999999999999754 578888887765

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.88  E-value=5.8e-22  Score=145.59  Aligned_cols=127  Identities=28%  Similarity=0.445  Sum_probs=107.7

Q ss_pred             Cchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCC
Q 048013           71 SLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS  148 (216)
Q Consensus        71 ~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~  148 (216)
                      ++++||++. .+.|+|+++ +..++++|++|+|+|+|++|++++|+++.+|+.+|++++++++|+++++++|++.++++.
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~   81 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCC
Confidence            467788665 688999998 568899999999999999999999999999998899999999999999999999998875


Q ss_pred             CCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEecc
Q 048013          149 TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      +..++..+.+++   +.+.++|++||++|+....+.+..+++++|+++.++.
T Consensus        82 ~~~~~~~~~~~~---~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~  130 (176)
T d2fzwa2          82 DFSKPIQEVLIE---MTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVG  130 (176)
T ss_dssp             GCSSCHHHHHHH---HTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECS
T ss_pred             chhhHHHHHHHH---HcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEe
Confidence            544444444444   3577999999999998888889999999988877754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=7e-22  Score=147.37  Aligned_cols=126  Identities=25%  Similarity=0.449  Sum_probs=111.1

Q ss_pred             hhhcchhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCccc
Q 048013           74 EGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQD  153 (216)
Q Consensus        74 ~aa~~~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  153 (216)
                      .+++..+++|+|++++.+++++|++|+|+|+|++|++++++++..|+.+|++++.+++|++.++++|++.++++  ..++
T Consensus         4 ~~~l~d~~~ta~~a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~--~~~~   81 (195)
T d1kola2           4 LTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLS--LDTP   81 (195)
T ss_dssp             HGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETT--SSSC
T ss_pred             HHhcccHHHHHHHHHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeC--CCcC
Confidence            34566799999999999999999999999999999999999999999889999999999999999999988764  3467


Q ss_pred             HHHHHHHHHHHcCCCccEEEEcCCC---------------HHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          154 IAEEVEKIQKAMGTGIDVSFDCAGF---------------NKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~d~vi~~~g~---------------~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      +.+.+.++  +.+.++|++||++|.               ...++.++++++++|+++++|+...
T Consensus        82 ~~~~i~~~--t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~  144 (195)
T d1kola2          82 LHEQIAAL--LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVT  144 (195)
T ss_dssp             HHHHHHHH--HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCS
T ss_pred             HHHHHHHH--hCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCC
Confidence            77777776  478899999999983               3678999999999999999997544

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.88  E-value=1.7e-22  Score=149.41  Aligned_cols=125  Identities=21%  Similarity=0.344  Sum_probs=107.5

Q ss_pred             hhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCC
Q 048013           73 EEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVST  149 (216)
Q Consensus        73 ~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~  149 (216)
                      ++||.++ ++.|||+++ +..+++++++|||+|+ |++|++++|+|+.+|++ ++++++++++.+.++++|++.+++++ 
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~-vi~~~~~~~~~~~l~~~Ga~~vi~~~-   78 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGAR-IYTTAGSDAKREMLSRLGVEYVGDSR-   78 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCE-EEEEESSHHHHHHHHTTCCSEEEETT-
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhcccccc-ceeeecccccccccccccccccccCC-
Confidence            3566554 788999998 5678999999999985 99999999999999995 88888899999999999999988853 


Q ss_pred             CcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          150 NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                       ++++.+.++++  +.+.|+|++||++|+ +.++.++++|+++|+++.+|....
T Consensus        79 -~~~~~~~v~~~--t~~~g~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~G~~~~  128 (183)
T d1pqwa_          79 -SVDFADEILEL--TDGYGVDVVLNSLAG-EAIQRGVQILAPGGRFIELGKKDV  128 (183)
T ss_dssp             -CSTHHHHHHHH--TTTCCEEEEEECCCT-HHHHHHHHTEEEEEEEEECSCGGG
T ss_pred             -ccCHHHHHHHH--hCCCCEEEEEecccc-hHHHHHHHHhcCCCEEEEEccCCC
Confidence             46787777766  467899999999998 778999999999999999996443

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.87  E-value=1e-21  Score=143.14  Aligned_cols=139  Identities=29%  Similarity=0.393  Sum_probs=118.6

Q ss_pred             CCchhhhcch-hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCC
Q 048013           70 VSLEEGAMCE-PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS  148 (216)
Q Consensus        70 ~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~  148 (216)
                      +++++||.++ ++.|+|++++..+++++++|+|+|+|++|++++++++..|+ +|++++++++|+++++++|++.++++.
T Consensus         1 ls~eeAA~l~~~~~Ta~~al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~~~~~~   79 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPL   79 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcCcceecccc
Confidence            4789999776 66789999999999999999999999999999999999999 499999999999999999999998854


Q ss_pred             CCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCCCcccchhhhhc
Q 048013          149 TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAS  215 (216)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~  215 (216)
                        ++++.+.+++.+    .+.|.+++++++...+..++++++++|+++++|+...+.++++..++.|
T Consensus        80 --~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~~~~~~~~~~~~~~~  140 (168)
T d1rjwa2          80 --KEDAAKFMKEKV----GGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLN  140 (168)
T ss_dssp             --TSCHHHHHHHHH----SSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHHHHHHT
T ss_pred             --cchhhhhccccc----CCCceEEeecCCHHHHHHHHHHhccCCceEecccccCCCCCCHHHHHHC
Confidence              356666666542    3566666777877889999999999999999999888888888877765

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.6e-22  Score=147.67  Aligned_cols=135  Identities=21%  Similarity=0.260  Sum_probs=112.0

Q ss_pred             chhhhcch-hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCC
Q 048013           72 LEEGAMCE-PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTN  150 (216)
Q Consensus        72 ~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~  150 (216)
                      .+.||.+. +..|+|++++..+++++++|+|+|+|++|++++|+++.+|++ |++++++++|++.++++|++.++++.+.
T Consensus         3 ~e~AApl~cag~Ta~~al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~-vi~~~~~~~k~~~a~~lGa~~~i~~~~~   81 (168)
T d1piwa2           3 SHLAAPLLCGGLTVYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAE-TYVISRSSRKREDAMKMGADHYIATLEE   81 (168)
T ss_dssp             HHHHGGGGTHHHHHHHHHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCE-EEEEESSSTTHHHHHHHTCSEEEEGGGT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEECCCCcchhHHHHhhhcccc-ccccccchhHHHHhhccCCcEEeeccch
Confidence            45566554 567899999989999999999999999999999999999995 8999999999999999999998875432


Q ss_pred             cccHHHHHHHHHHHcCCCccEEEEcCCCHH--HHHHHHHHhhcCCEEEEeccCCCCCcccchhhhhc
Q 048013          151 LQDIAEEVEKIQKAMGTGIDVSFDCAGFNK--TMSTALSATRAGGKVCLVGMGHREMTVPLTPAAAS  215 (216)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~--~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~  215 (216)
                       .++.+       ....++|+++|+++...  .+..++++++++|+++.+|.+.++.++++.++++|
T Consensus        82 -~~~~~-------~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k  140 (168)
T d1piwa2          82 -GDWGE-------KYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQHEMLSLKPYGLK  140 (168)
T ss_dssp             -SCHHH-------HSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCSSCCEEECGGGCB
T ss_pred             -HHHHH-------hhhcccceEEEEecCCccchHHHHHHHhhccceEEEeccccccccccHHHHHhC
Confidence             23221       23568999999988632  35778999999999999998888888888888765

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.87  E-value=6.2e-22  Score=146.29  Aligned_cols=120  Identities=24%  Similarity=0.306  Sum_probs=102.7

Q ss_pred             hhcchhhHHHHHHH-HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcc
Q 048013           75 GAMCEPLSVGVHAC-RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQ  152 (216)
Q Consensus        75 aa~~~~~~~a~~~l-~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~  152 (216)
                      +++-.+..|||+++ +..++++|++|||+|+ |++|++++|+++..|+ +|+++++++++.++++++|++.+++++  ++
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~Ga~~vi~~~--~~   84 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYK--TV   84 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETT--SC
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhhhhhhcccc--cc
Confidence            34445778999999 5678999999999986 8999999999999999 599999999999999999999998864  34


Q ss_pred             cHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEecc
Q 048013          153 DIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       153 ~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      ++.+.+.+.  +.+.++|+|||++|+ +.++..+++++++|+++.+|.
T Consensus        85 ~~~~~~~~~--~~~~Gvd~v~D~vG~-~~~~~~~~~l~~~G~~v~~G~  129 (182)
T d1v3va2          85 NSLEEALKK--ASPDGYDCYFDNVGG-EFLNTVLSQMKDFGKIAICGA  129 (182)
T ss_dssp             SCHHHHHHH--HCTTCEEEEEESSCH-HHHHHHGGGEEEEEEEEECCC
T ss_pred             cHHHHHHHH--hhcCCCceeEEecCc-hhhhhhhhhccCCCeEEeecc
Confidence            555544443  467899999999997 788999999999999999995

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.87  E-value=4.8e-22  Score=147.77  Aligned_cols=144  Identities=16%  Similarity=0.236  Sum_probs=114.1

Q ss_pred             CCchhhhcch-hhHHHHHHHH-HcCCCCCCEEEEE-cC-CHHHHHHHHHHHHcCCCeEEEEcCC----hHHHHHHHHcCC
Q 048013           70 VSLEEGAMCE-PLSVGVHACR-RANIGPETNVLIM-GS-GPIGLVTMLAARAFGAPRIVIVDVD----DYRLSVAKKLGA  141 (216)
Q Consensus        70 ~~~~~aa~~~-~~~~a~~~l~-~~~~~~~~~vlv~-Ga-g~~G~~~i~~a~~~g~~~vv~~~~~----~~~~~~~~~~g~  141 (216)
                      +++++||.++ .+.|||+++. ..++++|++++|+ |+ |++|++++|+||.+|++ ||++.++    +++.+.++++|+
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~-vI~~v~~~~~~~~~~~~~~~lGa   79 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFN-SISVIRDRPNLDEVVASLKELGA   79 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCE-EEEEECCCTTHHHHHHHHHHHTC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCe-EEEEEecccccchHHhhhhhccc
Confidence            5788999766 7889999995 5789999999887 54 89999999999999996 6666444    344567789999


Q ss_pred             CEEEeCCC-CcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC-CCCcccchhhhhc
Q 048013          142 DNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-REMTVPLTPAAAS  215 (216)
Q Consensus       142 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~  215 (216)
                      +.+++++. +..++.+.+.+++...++++|++||++|+ +.+...+++|+++|+++.+|... .+.+++...+++|
T Consensus        80 d~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~-~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~l~~k  154 (189)
T d1gu7a2          80 TQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGG-KSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFK  154 (189)
T ss_dssp             SEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCH-HHHHHHHHTSCTTCEEEECCCCSSCCEEECHHHHHHS
T ss_pred             cEEEeccccchhHHHHHHHHHHhhccCCceEEEECCCc-chhhhhhhhhcCCcEEEEECCccCCCccCcHHHHHHC
Confidence            99988642 22345556677766678899999999998 67789999999999999999544 4567887777654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.86  E-value=7.9e-21  Score=139.51  Aligned_cols=132  Identities=27%  Similarity=0.409  Sum_probs=107.1

Q ss_pred             Cchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCC
Q 048013           71 SLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS  148 (216)
Q Consensus        71 ~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~  148 (216)
                      ++++||++. .+.|+|+++ +..++++|++|+|+|+|++|++++++++.+|+.+|++++++++|++.++++|++.++++.
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~   81 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecC
Confidence            467788776 678999998 678999999999999999999999999999988899999999999999999999988764


Q ss_pred             CCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCC-EEEEeccCCCCC
Q 048013          149 TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGG-KVCLVGMGHREM  205 (216)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G-~~v~~g~~~~~~  205 (216)
                      +.++...+..+.   +.++++|++||++|.+...+.++..++++| +++..+.+....
T Consensus        82 ~~~~~~~~~~~~---~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~~~  136 (176)
T d2jhfa2          82 DYKKPIQEVLTE---MSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQ  136 (176)
T ss_dssp             GCSSCHHHHHHH---HTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTC
T ss_pred             CchhHHHHHHHH---HhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCCcc
Confidence            433333333333   467799999999999888889999998875 555555544433

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.2e-21  Score=142.91  Aligned_cols=136  Identities=21%  Similarity=0.232  Sum_probs=107.2

Q ss_pred             CCchhhhcch-hhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCC
Q 048013           70 VSLEEGAMCE-PLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS  148 (216)
Q Consensus        70 ~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~  148 (216)
                      .+++.+|.+. ...|+|++++..++++|++|+|+|+|++|++++|+|+.+|++ +++++.+++++++++++|++.++++.
T Consensus         4 ~~~a~~Apl~Cag~Tay~al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~-~i~~~~~~~~~~~a~~lGad~~i~~~   82 (168)
T d1uufa2           4 EQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAH-VVAFTTSEAKREAAKALGADEVVNSR   82 (168)
T ss_dssp             GGHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHTCSEEEETT
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHhCCCCCCEEEEeccchHHHHHHHHhhccccc-chhhccchhHHHHHhccCCcEEEECc
Confidence            3455666444 456899999999999999999999999999999999999996 77888999999999999999998864


Q ss_pred             CCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCC-Ccccchhhhhc
Q 048013          149 TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHRE-MTVPLTPAAAS  215 (216)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~  215 (216)
                      +.  +.   .    ....+++|++||++|++..+..++++++++|+++++|.+... ..++...+++|
T Consensus        83 ~~--~~---~----~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~~k  141 (168)
T d1uufa2          83 NA--DE---M----AAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMK  141 (168)
T ss_dssp             CH--HH---H----HTTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTT
T ss_pred             hh--hH---H----HHhcCCCceeeeeeecchhHHHHHHHHhcCCEEEEeccCCCCcccccHHHHHHC
Confidence            31  11   1    124568999999999877789999999999999999976553 45566666544

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.85  E-value=2.4e-20  Score=136.70  Aligned_cols=140  Identities=25%  Similarity=0.401  Sum_probs=110.9

Q ss_pred             Cchhhhcch-hhHHHHHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCC
Q 048013           71 SLEEGAMCE-PLSVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS  148 (216)
Q Consensus        71 ~~~~aa~~~-~~~~a~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~  148 (216)
                      ++++||++. .+.|+|+++ +..+++++++|+|+|+|++|+++++.++..|..+|++++++++|++.++++|+++++++.
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~   81 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPN   81 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGG
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCC
Confidence            467788765 788999998 678999999999999999999999999999998899999999999999999999999865


Q ss_pred             CCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcC-CEEEEeccCCCCCcccchhhh
Q 048013          149 TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHREMTVPLTPAA  213 (216)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~  213 (216)
                      +.+ +..+.+.+.  +.++|+|++||++|+...+..++.+++++ ++++..|.......++....+
T Consensus        82 ~~~-~~~~~~~~~--~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~~~~~~~~~~~  144 (175)
T d1cdoa2          82 DHS-EPISQVLSK--MTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQL  144 (175)
T ss_dssp             GCS-SCHHHHHHH--HHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHH
T ss_pred             Ccc-hhHHHHHHh--hccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCCcccCccHHHH
Confidence            432 233333333  35779999999999977778888887776 455556665555445554444

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.4e-20  Score=139.44  Aligned_cols=128  Identities=21%  Similarity=0.306  Sum_probs=101.9

Q ss_pred             CCCchhhhcchhhHHHHHHH-HHcCCCCC--CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHH-HHHHcCCCE
Q 048013           69 NVSLEEGAMCEPLSVGVHAC-RRANIGPE--TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLS-VAKKLGADN  143 (216)
Q Consensus        69 ~~~~~~aa~~~~~~~a~~~l-~~~~~~~~--~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~-~~~~~g~~~  143 (216)
                      ++++.+.++-.+..|||+++ +..+++++  ++|||+|+ |++|++++|+||.+|+++|++++.++++.. ..+++|++.
T Consensus         1 ~~~~~~galg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~   80 (187)
T d1vj1a2           1 HLSYFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA   80 (187)
T ss_dssp             CGGGGGTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE
T ss_pred             CccHHHHHhhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE
Confidence            35667766555788999998 56778877  88999985 999999999999999987777666665544 557899999


Q ss_pred             EEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          144 IVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      ++++.  ++++.+.++++   .+.|+|++||++|+ +.++..+++++++|+++.+|..+
T Consensus        81 vi~~~--~~~~~~~~~~~---~~~GvDvv~D~vGg-~~~~~~~~~l~~~G~iv~~G~~s  133 (187)
T d1vj1a2          81 AVNYK--TGNVAEQLREA---CPGGVDVYFDNVGG-DISNTVISQMNENSHIILCGQIS  133 (187)
T ss_dssp             EEETT--SSCHHHHHHHH---CTTCEEEEEESSCH-HHHHHHHTTEEEEEEEEEC----
T ss_pred             Eeecc--chhHHHHHHHH---hccCceEEEecCCc-hhHHHHhhhccccccEEEecccc
Confidence            99974  35676666665   46789999999998 77899999999999999999643

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.83  E-value=1e-21  Score=144.57  Aligned_cols=104  Identities=43%  Similarity=0.757  Sum_probs=96.0

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-h
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-E   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~   79 (216)
                      ++|++|++|++||||++.+...|+.|+.|..|++++|.+....+....+|+|+||+.+|++.++++|+++++++++.+ .
T Consensus        71 ~vG~~v~~~~~GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~  150 (178)
T d1e3ja1          71 KVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSF  150 (178)
T ss_dssp             EECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCCCGGGEEEEE
T ss_pred             ecCcccCCCCCCCEEEECcccccCCccccccCCccccccccceeccccccccceeeeecccceeeCCCCCCHHHHHHHHh
Confidence            478999999999999999999999999999999999999888777677899999999999999999999999998866 4


Q ss_pred             hhHHHHHHHHHcCCCCCCEEEEEcC
Q 048013           80 PLSVGVHACRRANIGPETNVLIMGS  104 (216)
Q Consensus        80 ~~~~a~~~l~~~~~~~~~~vlv~Ga  104 (216)
                      ++.|+|++++.++++++++|+|+|+
T Consensus       151 ~~~ta~~a~~~~~~~~g~~VlVig~  175 (178)
T d1e3ja1         151 KLEQTVDAFEAARKKADNTIKVMIS  175 (178)
T ss_dssp             EGGGHHHHHHHHHHCCTTCSEEEEE
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEEcc
Confidence            8889999999899999999999873

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.81  E-value=3.6e-20  Score=135.23  Aligned_cols=99  Identities=23%  Similarity=0.350  Sum_probs=90.7

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhh-cch
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGA-MCE   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa-~~~   79 (216)
                      ++|++|+.+++||||++.+...|++|..|+.|++++|.+....|. ..+|+|+||+.+|++.++++|++++++.++ ++.
T Consensus        71 ~vG~~v~~~~~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~~e~aa~~~~  149 (171)
T d1h2ba1          71 EVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGL-NIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLD  149 (171)
T ss_dssp             EECTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTT-TBCCSSBSEEEECGGGEEECCTTCCCCEEEEEGG
T ss_pred             cccCCCCcCCCCCEEEEcCccCCCCccccccccccccccccccee-ecccccceeeeehhhcceecCCCCCHHHHHHHHh
Confidence            468999999999999999999999999999999999999988887 578999999999999999999999998766 556


Q ss_pred             hhHHHHHHHHHcCCCCCCEEEE
Q 048013           80 PLSVGVHACRRANIGPETNVLI  101 (216)
Q Consensus        80 ~~~~a~~~l~~~~~~~~~~vlv  101 (216)
                      +++|+|++++..++ .|++|||
T Consensus       150 ~~~ta~~al~~~~~-~G~~VlI  170 (171)
T d1h2ba1         150 EINDVLERLEKGEV-LGRAVLI  170 (171)
T ss_dssp             GHHHHHHHHHTTCC-SSEEEEE
T ss_pred             HHHHHHHHHHhcCC-CCCEEEe
Confidence            89999999988877 8999987

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.4e-20  Score=137.94  Aligned_cols=104  Identities=40%  Similarity=0.620  Sum_probs=93.6

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEP   80 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~   80 (216)
                      ++|++|++|++||||++.+...|++|++|+.|++++|.+..+.+....+|+|+||+.++.++++++|++++++++++ .+
T Consensus        77 ~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~~g~~~~~G~~aey~~~~~~~~~~lP~~~~~~~aa~-~p  155 (185)
T d1pl8a1          77 KVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHR-FP  155 (185)
T ss_dssp             EECTTCCSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCGGGEEEE-EE
T ss_pred             EeccceeeecccccceecceeccccchhhccchhchhccceeeecccccccceEEEEEchHHEEECCCCCCHHHHHH-HH
Confidence            47899999999999999999999999999999999999998888767789999999999999999999999988765 46


Q ss_pred             hHHHHHHHHHcCCCCCCEEEEEcCCH
Q 048013           81 LSVGVHACRRANIGPETNVLIMGSGP  106 (216)
Q Consensus        81 ~~~a~~~l~~~~~~~~~~vlv~Gag~  106 (216)
                      +++++++++..+++.|++||| |+|+
T Consensus       156 l~~a~~a~~~~~~~~G~~VlI-g~GP  180 (185)
T d1pl8a1         156 LEKALEAFETFKKGLGLKIML-KCDP  180 (185)
T ss_dssp             GGGHHHHHHHHHTTCCSEEEE-ECCT
T ss_pred             HHHHHHHHHHhCCCCCCEEEE-EeCC
Confidence            778888998888999999988 6654

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.79  E-value=3.9e-20  Score=134.30  Aligned_cols=123  Identities=20%  Similarity=0.256  Sum_probs=98.6

Q ss_pred             HHHHHH-cCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHH
Q 048013           85 VHACRR-ANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        85 ~~~l~~-~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  162 (216)
                      ++++.. ...+++++|||+|+ |++|++++|+||.+|++ |+++.++++|.+.++++|++.++++++.   ..+   .+.
T Consensus        12 ~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~-Viat~~s~~k~~~~~~lGad~vi~~~~~---~~~---~~~   84 (167)
T d1tt7a2          12 VHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYD-VVASTGNREAADYLKQLGASEVISREDV---YDG---TLK   84 (167)
T ss_dssp             HHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCC-EEEEESSSSTHHHHHHHTCSEEEEHHHH---CSS---CCC
T ss_pred             HHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCc-eEEEecCHHHHHHHHhhcccceEeccch---hch---hhh
Confidence            455543 44567888999985 99999999999999996 9999999999999999999998874311   011   111


Q ss_pred             HHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC-CCcccchhhhhc
Q 048013          163 KAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR-EMTVPLTPAAAS  215 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~  215 (216)
                      ++.++++|++||++|+ +.+...+++|+++|+++.+|...+ ..++++.++++|
T Consensus        85 ~~~~~gvd~vid~vgg-~~~~~~~~~l~~~G~iv~~G~~~g~~~~~~~~~l~~k  137 (167)
T d1tt7a2          85 ALSKQQWQGAVDPVGG-KQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILR  137 (167)
T ss_dssp             SSCCCCEEEEEESCCT-HHHHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTS
T ss_pred             cccCCCceEEEecCcH-HHHHHHHHHhccCceEEEeeccCCCcccCCHHHHHHC
Confidence            2357889999999999 788999999999999999997655 578888888765

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.4e-19  Score=132.55  Aligned_cols=136  Identities=15%  Similarity=0.210  Sum_probs=107.3

Q ss_pred             CCchhhhcch-hhHHHHHHH---HHcC-CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCE
Q 048013           70 VSLEEGAMCE-PLSVGVHAC---RRAN-IGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADN  143 (216)
Q Consensus        70 ~~~~~aa~~~-~~~~a~~~l---~~~~-~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~  143 (216)
                      +++.+|+.++ +..|||+++   +..+ .+++++|||+|+ |++|++++|+||.+|++ |+++.+++++.+.++++|++.
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~-Via~~~~~~k~~~~~~lGad~   79 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQ-VVAVSGRESTHEYLKSLGASR   79 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCGGGHHHHHHHTEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCC-eEEEecchhHHHHHHhhcccc
Confidence            4778888776 556888765   3344 345569999985 99999999999999996 899999999999999999999


Q ss_pred             EEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC-CCcccchhhhhc
Q 048013          144 IVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR-EMTVPLTPAAAS  215 (216)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~  215 (216)
                      ++++++.  ++.+.   +   ....+|.++|++++ ..+...+++++++|+++.+|.... ..++++.+++.|
T Consensus        80 vi~~~~~--~~~~~---l---~~~~~~~vvD~Vgg-~~~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~k  143 (177)
T d1o89a2          80 VLPRDEF--AESRP---L---EKQVWAGAIDTVGD-KVLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILR  143 (177)
T ss_dssp             EEEGGGS--SSCCS---S---CCCCEEEEEESSCH-HHHHHHHHTEEEEEEEEECCCTTCSCCCCCSHHHHHH
T ss_pred             ccccccH--HHHHH---H---HhhcCCeeEEEcch-HHHHHHHHHhccccceEeecccCCccccccHHHHHHC
Confidence            9986532  22111   1   24557999999998 788999999999999999996544 577887777654

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.74  E-value=2.8e-18  Score=128.06  Aligned_cols=102  Identities=23%  Similarity=0.252  Sum_probs=86.7

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCC--------------------CCCCccceeEEecC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------------PVHGCLANQVVHPA   60 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~--------------------~~~g~~~~~~~~~~   60 (216)
                      ++|+++++|++||||++.+..+|++|.+|+.+++++|.+.......                    ..+|+|+||+.+|+
T Consensus        76 ~vG~~v~~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Ggfaey~~v~~  155 (199)
T d1cdoa1          76 SVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQ  155 (199)
T ss_dssp             EECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEG
T ss_pred             EEcCCCceecCCCEEEEeeeccccccccccCCCcccccccccccccccccCcccceeeccceeecccccCCceEEEEEch
Confidence            4789999999999999999999999999999999999876432110                    02499999999999


Q ss_pred             CceEECCCCCCchhhhcc-hhhHHHHHHHHH-cCCCCCCEEEEE
Q 048013           61 DLCFKLPDNVSLEEGAMC-EPLSVGVHACRR-ANIGPETNVLIM  102 (216)
Q Consensus        61 ~~~~~ip~~~~~~~aa~~-~~~~~a~~~l~~-~~~~~~~~vlv~  102 (216)
                      +.++++|+++++++++.+ .++.+++++++. ...+.+++|||+
T Consensus       156 ~~~~~iP~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         156 IAVAKIDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             GGEEECCTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             HHEEECCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            999999999999987754 588999999954 567889999984

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=1.1e-17  Score=123.95  Aligned_cols=102  Identities=22%  Similarity=0.334  Sum_probs=87.0

Q ss_pred             CCCCCC-CCCCCCCEEEEcCC-cCCCCCcchhCCCCCCCCCCCCCCC------CCCCCccceeEEecCCceEECCCCCCc
Q 048013            1 KVGSEV-KTLVPGDRVALEPG-ISCWQCDYCKGGRYNLCPESKGLGS------PPVHGCLANQVVHPADLCFKLPDNVSL   72 (216)
Q Consensus         1 ~vG~~v-~~~~~Gd~V~~~~~-~~~~~c~~~~~~~~~~~~~~~~~~~------~~~~g~~~~~~~~~~~~~~~ip~~~~~   72 (216)
                      ++|+++ +.+++||||.+.+. ..|++|..|+.+++++|.+....+.      ...+|+|+||+.+|++.++++|+++++
T Consensus        76 ~vG~~v~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~G~~~~Ggfaey~~v~~~~~~~iP~~l~~  155 (192)
T d1piwa1          76 KLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWV  155 (192)
T ss_dssp             EECTTCCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTCCE
T ss_pred             hcccccccccCCCCeeeEeeeccCCCCchhhhcCCcccccccccccccccccccccccceeeEEEeehHHeEECCCCCCH
Confidence            367777 56999999988764 5899999999999999998765432      135799999999999999999999999


Q ss_pred             hhhhcchh-hHHHHHHHHHcCCCCCCEEEEE
Q 048013           73 EEGAMCEP-LSVGVHACRRANIGPETNVLIM  102 (216)
Q Consensus        73 ~~aa~~~~-~~~a~~~l~~~~~~~~~~vlv~  102 (216)
                      ++|+++.+ +.+||++++..+++++++|+|.
T Consensus       156 e~Aal~~~~~~ta~~~l~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         156 ETLPVGEAGVHEAFERMEKGDVRYRFTLVGY  186 (192)
T ss_dssp             EEEESSHHHHHHHHHHHHHTCCSSEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            99887764 6789999999999999999875

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.69  E-value=1.3e-17  Score=123.71  Aligned_cols=102  Identities=20%  Similarity=0.320  Sum_probs=82.3

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCC---CCC-------------------CCCCCccceeEEe
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKG---LGS-------------------PPVHGCLANQVVH   58 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~-------------------~~~~g~~~~~~~~   58 (216)
                      ++|++|++|++||||+..+ .+|++|.+|+.|++++|++...   .+.                   ....|+|+||+.+
T Consensus        70 ~vG~~v~~~~vGDrVv~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v  148 (194)
T d1f8fa1          70 AIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALS  148 (194)
T ss_dssp             EECTTCCSCCTTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEE
T ss_pred             ecCccceeEccCceeeeec-ccccCChhhhCCCcccccccccceeccccccceeeeecCCceeeccccccccccceeEEE
Confidence            4799999999999997654 4899999999999999986411   110                   0023799999999


Q ss_pred             cCCceEECCCCCCchhhhcchhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 048013           59 PADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIV  126 (216)
Q Consensus        59 ~~~~~~~ip~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~  126 (216)
                      ++.+++++|++++++++                       +++.|+|++|++++|+++.+|+.+|+++
T Consensus       149 ~~~~~~~ip~~i~~~~~-----------------------~~i~g~g~~g~~aiq~a~~~g~~~iiaV  193 (194)
T d1f8fa1         149 RENNTVKVTKDFPFDQL-----------------------VKFYAFDEINQAAIDSRKGITLKPIIKI  193 (194)
T ss_dssp             EGGGEEEECTTCCGGGG-----------------------EEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred             ehHHEEECCCCCCcccE-----------------------EEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence            99999999999876654                       3456789999999999999999766654

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.67  E-value=1.3e-20  Score=140.93  Aligned_cols=116  Identities=25%  Similarity=0.303  Sum_probs=88.7

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCC------CC---CCCCCccceeEEecC--CceEECCCC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGL------GS---PPVHGCLANQVVHPA--DLCFKLPDN   69 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~------~~---~~~~g~~~~~~~~~~--~~~~~ip~~   69 (216)
                      ++|++|++|++||||++.+..+|++|+.|+.++++.|......      +.   ...+|+|+||+++|.  ..+++||++
T Consensus        74 ~vG~~V~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~~~~~~~Gg~aeyv~vp~~~~~l~~iPd~  153 (201)
T d1kola1          74 EKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDR  153 (201)
T ss_dssp             EECTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCH
T ss_pred             ccccccccccccceeEEeeeeeccCChhhhCCCcccccccccccccccccccCCCccccccccEEEeehHHCeEEECCCC
Confidence            4799999999999999999999999999999999988655321      11   245799999999985  369999987


Q ss_pred             CCchh-hhcchhhHHHHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q 048013           70 VSLEE-GAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGA  120 (216)
Q Consensus        70 ~~~~~-aa~~~~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~  120 (216)
                      ..+.+ +++..++++++++++....+.+    ++|+|++|++++|.||.+|+
T Consensus       154 ~~~~~~~~~~~~~~~~~~a~~~~~~~~g----~~g~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         154 DKAMEKINIAEVVGVQVISLDDAPRGYG----EFDAGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             HHHHHTCCHHHHHTEEEECGGGHHHHHH----HHHHTCSCEEEECTTCSSCC
T ss_pred             CChHHHHHHHHHHHHHHHHHHhCCCCCe----EEeeCHHHHHHHHHHHHcCC
Confidence            54444 4455567677766644333323    24889999999999998875

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.66  E-value=7.4e-17  Score=117.89  Aligned_cols=100  Identities=27%  Similarity=0.348  Sum_probs=86.5

Q ss_pred             CCCCCCCCCCCCCEEEEcCC-cCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhh-cc
Q 048013            1 KVGSEVKTLVPGDRVALEPG-ISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGA-MC   78 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~-~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa-~~   78 (216)
                      ++|++|+.+++||||+..+. ..|+.|.+|+.+++++|.+....|. ..+|+|+||+.+|+++++++|++++++.++ .+
T Consensus        74 ~~G~~v~~~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~~G~-~~~gg~aey~~v~~~~~~~iPd~l~~~~a~~~~  152 (175)
T d1llua1          74 AVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGY-SVNGGYAEYVLADPNYVGILPKNVKATIHPGKL  152 (175)
T ss_dssp             EECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEEBTT-TBCCSSBSEEEECTTTSEECCTTCCCCEEEECG
T ss_pred             EeCCCccccccCCEEEeccccccCCccccccCCccccccccccccc-ccccccceEEEechHHEEECCCCCChhHHHHHH
Confidence            47899999999999998754 5899999999999999999988887 578999999999999999999999988776 45


Q ss_pred             hhhHHHHHHHHHcCCCCCCEEEEE
Q 048013           79 EPLSVGVHACRRANIGPETNVLIM  102 (216)
Q Consensus        79 ~~~~~a~~~l~~~~~~~~~~vlv~  102 (216)
                      .++.++++.++... .+|++|||+
T Consensus       153 ~~~~t~~~~~~~g~-~~G~~VLVl  175 (175)
T d1llua1         153 DDINQILDQMRAGQ-IEGRIVLEM  175 (175)
T ss_dssp             GGHHHHHHHHHTTC-CSSEEEEEC
T ss_pred             hHHHHHHHHHHhCC-CCCCEEEeC
Confidence            57888888887554 469999984

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.65  E-value=5.1e-17  Score=119.33  Aligned_cols=96  Identities=26%  Similarity=0.514  Sum_probs=81.2

Q ss_pred             CCCCCC-----CCCCCCEEEEcCCcCCCCCcchhCCCC-CCCCCCCCCCCC-------CCCCccceeEEec-CCceEECC
Q 048013            2 VGSEVK-----TLVPGDRVALEPGISCWQCDYCKGGRY-NLCPESKGLGSP-------PVHGCLANQVVHP-ADLCFKLP   67 (216)
Q Consensus         2 vG~~v~-----~~~~Gd~V~~~~~~~~~~c~~~~~~~~-~~~~~~~~~~~~-------~~~g~~~~~~~~~-~~~~~~ip   67 (216)
                      +|++|+     .+++||||++.+..+|++|.+|+.|+. +.|++...+|+.       ..+|+|+||+.++ +++++++|
T Consensus        73 vG~~v~~~~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~~G~~~~~~~~~~~~Gg~ae~~~v~~~~~v~~ip  152 (184)
T d1vj0a1          73 VNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVS  152 (184)
T ss_dssp             ESSCCBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEEC
T ss_pred             EeccccccccccccceeeeEeccccccccChhHhCccccccCCCceeeccCCCCCCCCCcceeCcCcEEechhHcEEECC
Confidence            566664     578999999999999999999999975 568888777652       3579999999995 68999999


Q ss_pred             CCCCchhhhcchhhHHHHHHHHHcCCCCCCEEEEE
Q 048013           68 DNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIM  102 (216)
Q Consensus        68 ~~~~~~~aa~~~~~~~a~~~l~~~~~~~~~~vlv~  102 (216)
                      +++++++     ++++|+++++.+++++|++|+|+
T Consensus       153 ~~l~~~~-----pl~~A~~a~~~~~~~~G~~VlI~  182 (184)
T d1vj0a1         153 EKITHRL-----PLKEANKALELMESREALKVILY  182 (184)
T ss_dssp             TTCCEEE-----EGGGHHHHHHHHHHTSCSCEEEE
T ss_pred             CCCCHHH-----HHHHHHHHHHHhCCCcCCEEEEe
Confidence            9998753     56688999998899999999997

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.65  E-value=1.3e-16  Score=116.17  Aligned_cols=100  Identities=32%  Similarity=0.489  Sum_probs=85.7

Q ss_pred             CCCCCCCCCCCCCEEEEcCC-cCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch
Q 048013            1 KVGSEVKTLVPGDRVALEPG-ISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~-~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~   79 (216)
                      ++|+.++.+++||||++.+. ..|+.|..|..+..++|.+....|. ..+|+|+||+.+|+++++++|++++++.|+ +.
T Consensus        69 ~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~G~~aey~~v~~~~~~~iP~~~~~e~A~-l~  146 (171)
T d1rjwa1          69 EVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGY-SVDGGYAEYCRAAADYVVKIPDNTIIEVQP-LE  146 (171)
T ss_dssp             EECTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTT-TBCCSSBSEEEEEGGGCEECCTTCCEEEEE-GG
T ss_pred             EecccccCceeeeEEeeccccccccccccccCCCccccccccccce-eccCccccceEecHHHEEECCCCCCHHHHH-HH
Confidence            46899999999999988754 5789999999999999999888887 578999999999999999999999987665 46


Q ss_pred             hhHHHHHHHHHcCCCCCCEEEEEc
Q 048013           80 PLSVGVHACRRANIGPETNVLIMG  103 (216)
Q Consensus        80 ~~~~a~~~l~~~~~~~~~~vlv~G  103 (216)
                      +++++++.+....+ +|++|||+|
T Consensus       147 ~~~~~~~~~~~~~~-~G~tVlViG  169 (171)
T d1rjwa1         147 KINEVFDRMLKGQI-NGRVVLTLE  169 (171)
T ss_dssp             GHHHHHHHHHTTCC-SSEEEEECC
T ss_pred             HHHHHHHHHHhcCC-CCCEEEEeC
Confidence            77788877765555 599999987

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.63  E-value=1.6e-16  Score=118.75  Aligned_cols=101  Identities=19%  Similarity=0.245  Sum_probs=83.1

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCC------------------------CCCCccceeE
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP------------------------PVHGCLANQV   56 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~------------------------~~~g~~~~~~   56 (216)
                      ++|++|+++++||||++.+...|++|++|+.|++++|.+....+..                        ...|+|+||+
T Consensus        75 ~vG~~V~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~faey~  154 (202)
T d1e3ia1          75 SVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYT  154 (202)
T ss_dssp             EECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEE
T ss_pred             eecCCceeccCCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccccccCceeeecccccCCceEEE
Confidence            4789999999999999999999999999999999999877654421                        1248999999


Q ss_pred             EecCCceEECCCCCCchhhhcc-hhhHHHHHHHHHcCCCCCCEEEEEc
Q 048013           57 VHPADLCFKLPDNVSLEEGAMC-EPLSVGVHACRRANIGPETNVLIMG  103 (216)
Q Consensus        57 ~~~~~~~~~ip~~~~~~~aa~~-~~~~~a~~~l~~~~~~~~~~vlv~G  103 (216)
                      .+|+..++++|++++++.++.. .++.+.+++++.  +++|++|.|+.
T Consensus       155 ~v~~~~l~~lP~~~~~~~~~~~~~~~~~~~~a~~~--~k~G~~V~vi~  200 (202)
T d1e3ia1         155 VVSEANLARVDDEFDLDLLVTHALPFESINDAIDL--MKEGKSIRTIL  200 (202)
T ss_dssp             EEEGGGEEECCTTSCGGGGEEEEEEGGGHHHHHHH--HHTTCCSEEEE
T ss_pred             EEehhhEEECCCCCCHHHHHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence            9999999999999999876644 366777777754  36788887763

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.63  E-value=1.9e-16  Score=115.93  Aligned_cols=99  Identities=28%  Similarity=0.392  Sum_probs=82.1

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCc-eEECCCCCCchhhhc-c
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADL-CFKLPDNVSLEEGAM-C   78 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~ip~~~~~~~aa~-~   78 (216)
                      ++|+.+++|++||||++.+...|+.|..|+.+++++|++...+|. ..+|+|+||+.+++.. ++++|+..+.+.++. +
T Consensus        76 ~~g~~v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~~g~-~~~G~~aey~~vp~~~~~~~~~~~~~~~~a~~~~  154 (177)
T d1jvba1          76 EVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGI-NFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKL  154 (177)
T ss_dssp             EECTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTT-TBCCSSBSEEEESCGGGEEECSSSCCCCEEEEEG
T ss_pred             eeccCccccccCceEeeeeccccccccccccccccccCCcceeee-ccccccccEEEEEhHHeEEECCCCChHHHHHHHH
Confidence            468899999999999999999999999999999999999988887 5789999999997655 566665554444443 3


Q ss_pred             hhhHHHHHHHHHcCCCCCCEEEE
Q 048013           79 EPLSVGVHACRRANIGPETNVLI  101 (216)
Q Consensus        79 ~~~~~a~~~l~~~~~~~~~~vlv  101 (216)
                      .++++++++++..++ .|++|||
T Consensus       155 ~~~~~a~~~~~~~~~-~G~~VlI  176 (177)
T d1jvba1         155 EEANEAIDNLENFKA-IGRQVLI  176 (177)
T ss_dssp             GGHHHHHHHHHTTCC-CSEEEEE
T ss_pred             HHHHHHHHHHHhhcc-cCCceEC
Confidence            588899999988776 5888886

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.57  E-value=1.1e-15  Score=113.51  Aligned_cols=102  Identities=18%  Similarity=0.162  Sum_probs=83.4

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCC---C-----------------CCCCCccceeEEecC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG---S-----------------PPVHGCLANQVVHPA   60 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~---~-----------------~~~~g~~~~~~~~~~   60 (216)
                      ++|++|+.+++||||++.+..+|+.|..|+.++++.|++...+.   .                 ...+|+|+||+.+|+
T Consensus        74 ~vG~~V~~~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~g~GgfAey~vvp~  153 (197)
T d2fzwa1          74 SVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVAD  153 (197)
T ss_dssp             EECTTCCSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEG
T ss_pred             eecCCceecCCCCEEEEccccccccccccccCccccCccccccccccccCCccceeccCCcceecccccccceeEEEech
Confidence            47899999999999999999999999999999999998643210   0                 012489999999999


Q ss_pred             CceEECCCCCCchhhhcch-hhHHHHHHHHHc-CCCCCCEEEEE
Q 048013           61 DLCFKLPDNVSLEEGAMCE-PLSVGVHACRRA-NIGPETNVLIM  102 (216)
Q Consensus        61 ~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~~~-~~~~~~~vlv~  102 (216)
                      ..++++|+++++++++.+. ++.+++.+++.. ..+.+++|||+
T Consensus       154 ~~~~~vp~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         154 ISVAKIDPLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             GGEEECCTTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             HHEEECCCCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            9999999999999888554 777888888543 34678888874

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=2.6e-14  Score=104.33  Aligned_cols=92  Identities=22%  Similarity=0.344  Sum_probs=72.6

Q ss_pred             CCCCCCCCCCCCCEEEEcC-CcCCCCCcchhCCCCCCCCCCCCCCC-------CCCCCccceeEEecCCceEECCCCCCc
Q 048013            1 KVGSEVKTLVPGDRVALEP-GISCWQCDYCKGGRYNLCPESKGLGS-------PPVHGCLANQVVHPADLCFKLPDNVSL   72 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~-~~~~~~c~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~ip~~~~~   72 (216)
                      ++|++|+++++||||.+.+ ...|++|++|+.|++++|++......       ...+|+|+||+.+|+++++++|+..  
T Consensus        68 ~vG~~V~~~~vGdrV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~GgfaEy~~v~~~~~~~ip~~~--  145 (179)
T d1uufa1          68 AVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRVAD--  145 (179)
T ss_dssp             EECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCCCC--
T ss_pred             hhccccccCCCCCEEEEcccccccCccccccCcccccCCCccccccccCCCCCcccccccceEEEechHHEEECCCCC--
Confidence            4789999999999998876 46999999999999999987643211       1346999999999999999999654  


Q ss_pred             hhhhcchhhHHHHHHHHHcCCC
Q 048013           73 EEGAMCEPLSVGVHACRRANIG   94 (216)
Q Consensus        73 ~~aa~~~~~~~a~~~l~~~~~~   94 (216)
                      ..++...++.++++++....++
T Consensus       146 ~~~~~a~~l~~a~~a~~~a~v~  167 (179)
T d1uufa1         146 IEMIRADQINEAYERMLRGDVK  167 (179)
T ss_dssp             EEEECGGGHHHHHHHHHTTCSS
T ss_pred             cChhHhchhHHHHHHHHHhCcc
Confidence            3334445788899998766554

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.46  E-value=2.7e-14  Score=104.03  Aligned_cols=77  Identities=23%  Similarity=0.203  Sum_probs=65.6

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCC--CCCCCccceeEEecC--CceEECCCCCCchhhh
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGS--PPVHGCLANQVVHPA--DLCFKLPDNVSLEEGA   76 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~--~~~~~ip~~~~~~~aa   76 (216)
                      ++|++|++|++||||++.+..+|++|++|+.+++++|.+......  ...+|+|+||+.+|.  ..++++|+++++++++
T Consensus        67 ~vG~~v~~~~vGdrV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G~~aEy~~vp~a~~~l~~iP~~~~~~~~~  146 (177)
T d1jqba1          67 EVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVFGEYFHVNDADMNLAILPKDVDLSKLV  146 (177)
T ss_dssp             EECTTCCSCCTTCEEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCCSSBSSEEESSHHHHCEECCTTSCGGGGE
T ss_pred             ecccccceecCCCcEEEeeeeccccccchhhhhhcccccccccccccCCCChhcCeeEEEEhhhCeEEECCCCcchHHHH
Confidence            479999999999999999999999999999999999987643221  246799999999996  4689999999988766


Q ss_pred             c
Q 048013           77 M   77 (216)
Q Consensus        77 ~   77 (216)
                      .
T Consensus       147 ~  147 (177)
T d1jqba1         147 T  147 (177)
T ss_dssp             E
T ss_pred             H
Confidence            4

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.45  E-value=1e-14  Score=108.32  Aligned_cols=100  Identities=19%  Similarity=0.266  Sum_probs=76.0

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCC--------------------CCCCccceeEEecC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP--------------------PVHGCLANQVVHPA   60 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~--------------------~~~g~~~~~~~~~~   60 (216)
                      ++|++++++++||||++.+..+|++|.+|+.+++++|++..+.+..                    ...|+|+||+.+++
T Consensus        75 ~~G~~v~~~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~faey~~v~~  154 (198)
T d1p0fa1          75 SIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVAD  154 (198)
T ss_dssp             EECTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEET
T ss_pred             ecCcccccCcCCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeEeeCCeeccccCCCccceeeEEecH
Confidence            4789999999999999999999999999999999999866543220                    12489999999999


Q ss_pred             CceEECCCCCCchhhhcch-hhHHHHHHHHHcCCCCCCEEEEEcCCHHHH
Q 048013           61 DLCFKLPDNVSLEEGAMCE-PLSVGVHACRRANIGPETNVLIMGSGPIGL  109 (216)
Q Consensus        61 ~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlv~Gag~~G~  109 (216)
                      ..++++|++++++.++... .+..         +.+++.++|.|+|++|+
T Consensus       155 ~~~~kip~~~~~~~~~~~~~~~~~---------v~~~~~vlv~G~G~iGl  195 (198)
T d1p0fa1         155 IAVAKIDPKINVNFLVSTKLTLDQ---------INKAFELLSSGQGVRSI  195 (198)
T ss_dssp             TSEEEECTTSCGGGGEEEEECGGG---------HHHHHHHTTTSSCSEEE
T ss_pred             HHEEECCCCCCHHHHHHhhcchhh---------cCCCCEEEEECCCcceE
Confidence            9999999999877655321 2211         12233466778877764

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.39  E-value=4e-13  Score=99.57  Aligned_cols=100  Identities=17%  Similarity=0.180  Sum_probs=75.6

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCC--------------------CCCCCccceeEEecC
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGS--------------------PPVHGCLANQVVHPA   60 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~--------------------~~~~g~~~~~~~~~~   60 (216)
                      ++|++++++++||||++.+...|+.|..|+.+++++|.+......                    ....|+|+||+++|+
T Consensus        75 ~vG~~v~~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~fAEy~~v~~  154 (198)
T d2jhfa1          75 SIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDE  154 (198)
T ss_dssp             EECTTCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEG
T ss_pred             ecCccccCcCCCCEEEEeeeecccccccccCCccceeccccccccCccccCccccccccCceeccCCCCCcccCeEEeCH
Confidence            479999999999999999999999999999999999986643211                    012489999999999


Q ss_pred             CceEECCCCCCchhhhc-chhhHHHHHHHHHcCCCCCCEEEEE
Q 048013           61 DLCFKLPDNVSLEEGAM-CEPLSVGVHACRRANIGPETNVLIM  102 (216)
Q Consensus        61 ~~~~~ip~~~~~~~aa~-~~~~~~a~~~l~~~~~~~~~~vlv~  102 (216)
                      .+++++|++++++.++. ..++.......  ..+++|++|.|+
T Consensus       155 ~~~~~~p~~~~~e~l~~~~~~~~~v~~g~--~~l~~G~~VaVi  195 (198)
T d2jhfa1         155 ISVAKIDAAFALDPLITHVLPFEKINEGF--DLLRSGESIRTI  195 (198)
T ss_dssp             GGEEECCTTSCCGGGEEEEEEGGGHHHHH--HHHHTTCCSEEE
T ss_pred             HHeEECCCCCCHHHHHHHHHHHHhhhhCC--ceeeCCCEEEEE
Confidence            99999999988766553 22333322222  124678888775

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=7.3e-13  Score=82.35  Aligned_cols=71  Identities=14%  Similarity=0.209  Sum_probs=59.4

Q ss_pred             CCchhhhcch-hhHHHHHHH----HHcCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCC
Q 048013           70 VSLEEGAMCE-PLSVGVHAC----RRANIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGA  141 (216)
Q Consensus        70 ~~~~~aa~~~-~~~~a~~~l----~~~~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~  141 (216)
                      +++++|+.+. +..|||.++    +....++++++||+|+ |++|.+++|+++.+|++ |+++.+++++.++++++|+
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~-Vi~~t~s~~k~~~~~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQ-VVAVSGRESTHEYLKSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCGGGHHHHHHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCe-EEEEECCHHHHHHHHHCCC
Confidence            4678888765 555787765    2355789999999985 99999999999999996 9999999999999999874

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.6e-12  Score=90.88  Aligned_cols=75  Identities=19%  Similarity=0.299  Sum_probs=62.9

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcch-
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-   79 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-   79 (216)
                      ++|+++++|++||||+..+                           ...|+|+||+.+|++.++++|+++++++|+.++ 
T Consensus        74 ~vG~~v~~~~vGdrV~~~~---------------------------~~~G~~ae~~~v~~~~~~~iP~~ls~~~Aa~~~~  126 (150)
T d1yb5a1          74 AVGDNASAFKKGDRVFTSS---------------------------TISGGYAEYALAADHTVYKLPEKLKPVIGSQYPL  126 (150)
T ss_dssp             EECTTCTTCCTTCEEEESC---------------------------CSSCSSBSEEEEEGGGEEECCTTCCCCEEEEEEG
T ss_pred             eecceeeccccCccccccc---------------------------cccccccccccccccccccccCCCCHHHHHHhhh
Confidence            4789999999999998752                           245999999999999999999999999998665 


Q ss_pred             hhHHHHHHH-HHcCCCCCCEEEEE
Q 048013           80 PLSVGVHAC-RRANIGPETNVLIM  102 (216)
Q Consensus        80 ~~~~a~~~l-~~~~~~~~~~vlv~  102 (216)
                      ...++|+.+ .....+.|+++||+
T Consensus       127 ~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1         127 EKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             GGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             hhhhehhhheEEcCcccCCEEEEC
Confidence            556777776 56778899999873

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=1.2e-11  Score=87.21  Aligned_cols=74  Identities=24%  Similarity=0.286  Sum_probs=59.9

Q ss_pred             CCCCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhc--c
Q 048013            1 KVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAM--C   78 (216)
Q Consensus         1 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~--~   78 (216)
                      ++|++|++|++||||+...                           ...|+|+||+.++.+.++++|+++++++++.  +
T Consensus        70 ~vG~~v~~~~vGdrV~~~~---------------------------~~~G~~ae~~~v~~~~~~~~P~~~~~~~a~a~~~  122 (147)
T d1qora1          70 KVGSGVKHIKAGDRVVYAQ---------------------------SALGAYSSVHNIIADKAAILPAAIKVDVAEQQKY  122 (147)
T ss_dssp             EECTTCCSCCTTCEEEESC---------------------------CSSCCSBSEEEEEGGGEEECCTTSCCCCCGGGEE
T ss_pred             eeeeecccccccceeeeec---------------------------cccccceeEEEEehHHeEEcCcccchHHHHHHHH
Confidence            4789999999999997531                           2458999999999999999999998876543  2


Q ss_pred             h-hhHHHHHHHHHcCCCCCCEEEE
Q 048013           79 E-PLSVGVHACRRANIGPETNVLI  101 (216)
Q Consensus        79 ~-~~~~a~~~l~~~~~~~~~~vlv  101 (216)
                      + ..+++++++...++++|++|||
T Consensus       123 ~~~~~~~~~~l~~~~~~~G~~VLI  146 (147)
T d1qora1         123 PLKDAQRAHEILESRATQGSSLLI  146 (147)
T ss_dssp             EGGGHHHHHHHHHTTCCCBCCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEe
Confidence            2 5567778776678999999997

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.00  E-value=2.8e-10  Score=80.40  Aligned_cols=76  Identities=13%  Similarity=0.048  Sum_probs=55.3

Q ss_pred             CCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcc-hhhH
Q 048013            4 SEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMC-EPLS   82 (216)
Q Consensus         4 ~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~-~~~~   82 (216)
                      ..++.|++||+|+......                     + ...+|+|+||+.+|++.++++|++++. +|+.+ .+..
T Consensus        75 ~~~~~~~~g~~v~~~~~~~---------------------~-~~~~G~~aEy~~v~~~~~~~iP~~l~~-~aa~l~~a~~  131 (152)
T d1xa0a1          75 SQHPRFREGDEVIATGYEI---------------------G-VTHFGGYSEYARLHGEWLVPLPKGLER-IAQEISLAEL  131 (152)
T ss_dssp             CCSSSCCTTCEEEEESTTB---------------------T-TTBCCSSBSEEEECGGGCEECCTTHHH-HEEEEEGGGH
T ss_pred             cCCCccccCCEEEEecCcc---------------------c-cccCCCcceeeeehhhccccCCCCCCH-HHHHHHHHHH
Confidence            3566799999998652211                     0 135699999999999999999999985 45544 3555


Q ss_pred             HHHHHH-HHcCCCCCCEEEEEc
Q 048013           83 VGVHAC-RRANIGPETNVLIMG  103 (216)
Q Consensus        83 ~a~~~l-~~~~~~~~~~vlv~G  103 (216)
                      |++.++ +...++ |++||++|
T Consensus       132 ta~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1         132 PQALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             HHHHHHHHHTCCC-SEEEEECC
T ss_pred             HHHHHHHHhcCCC-CCEEEEcC
Confidence            666665 566665 99999975

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.76  E-value=1.2e-09  Score=75.10  Aligned_cols=53  Identities=17%  Similarity=0.111  Sum_probs=44.9

Q ss_pred             CCCccceeEEecCCceEECCCCCCchhhhcch-hhHHHHHHHHHcCCCCCCEEEE
Q 048013           48 VHGCLANQVVHPADLCFKLPDNVSLEEGAMCE-PLSVGVHACRRANIGPETNVLI  101 (216)
Q Consensus        48 ~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~-~~~~a~~~l~~~~~~~~~~vlv  101 (216)
                      .+|+|+||+.+++++++++|+++++++|+.+. .+.|||+++... -+.+++||+
T Consensus        77 ~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~~~-g~~g~tvl~  130 (131)
T d1iz0a1          77 PQGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDR-GHTGKVVVR  130 (131)
T ss_dssp             SSCCSBSEEEEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTTCT-TCCBEEEEE
T ss_pred             ccCccceeeeeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHHhc-ccCCCEEEE
Confidence            45999999999999999999999999999764 788999998432 256888876

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=98.74  E-value=2.1e-11  Score=87.30  Aligned_cols=78  Identities=22%  Similarity=0.222  Sum_probs=55.8

Q ss_pred             CCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchh-hHH
Q 048013            5 EVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEP-LSV   83 (216)
Q Consensus         5 ~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~-~~~   83 (216)
                      .+..+++||+|+..+...                     + ...+|+|+||+.+|++.++++|+++++++|+.++. ..|
T Consensus        76 ~~~~~~~g~~v~~~~~~~---------------------g-~~~~G~~aey~~v~~~~l~~iP~~ls~~~Aa~~~~~~~t  133 (162)
T d1tt7a1          76 NDPRFAEGDEVIATSYEL---------------------G-VSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIV  133 (162)
T ss_dssp             SSTTCCTTCEEEEESTTB---------------------T-TTBCCSSBSSEEECGGGEEECCTTCCHHHHHHSCSTTSE
T ss_pred             cccccccceeeEeeeccc---------------------e-eccccccceEEEecHHHEEECCCCCCHHHHHHHHHHHHH
Confidence            456788999998653211                     1 13569999999999999999999999999997764 445


Q ss_pred             HHHHHHHcCCCCCCEEEEEcC
Q 048013           84 GVHACRRANIGPETNVLIMGS  104 (216)
Q Consensus        84 a~~~l~~~~~~~~~~vlv~Ga  104 (216)
                      +|.++...+...+++||+.|+
T Consensus       134 a~~~~~~~~~~~~~~Vli~ga  154 (162)
T d1tt7a1         134 DREVSLEETPGALKDILQNRI  154 (162)
T ss_dssp             EEEECSTTHHHHHHHTTTTCC
T ss_pred             HHHHHHhcCCCCCCEEEEECC
Confidence            666553333444566777764

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=98.69  E-value=3.6e-12  Score=92.33  Aligned_cols=83  Identities=19%  Similarity=0.206  Sum_probs=61.9

Q ss_pred             CCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchhhH
Q 048013            3 GSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLS   82 (216)
Q Consensus         3 G~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~   82 (216)
                      |..+..++.||+|....                           ...|+|+||+.+|+++++++|++++.+.++.+.++ 
T Consensus        88 ~~~~~~~~~g~~v~~~~---------------------------~~~g~~aey~~v~~~~~~~iP~~~~~~~a~~~~~~-  139 (175)
T d1gu7a1          88 GSNVSSLEAGDWVIPSH---------------------------VNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGL-  139 (175)
T ss_dssp             CTTCCSCCTTCEEEESS---------------------------SCCCCSBSEEEEEGGGEEEECCHHHHHHTTCSCCC-
T ss_pred             cccccccccccceeccc---------------------------cccccccceeeehhhhccCCCccchhhhhccchHH-
Confidence            55666777777776541                           24589999999999999999998866665554333 


Q ss_pred             HHHHHHH--HcCCCCCCEEEEEc-C-CHHHHHHHH
Q 048013           83 VGVHACR--RANIGPETNVLIMG-S-GPIGLVTML  113 (216)
Q Consensus        83 ~a~~~l~--~~~~~~~~~vlv~G-a-g~~G~~~i~  113 (216)
                      |+|+++.  ...+++++++||+| + |++|++++|
T Consensus       140 ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         140 TDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT  174 (175)
T ss_dssp             CCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECccchhhhheEEe
Confidence            6677763  35789999999997 4 678987665

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.68  E-value=1.7e-08  Score=71.20  Aligned_cols=100  Identities=20%  Similarity=0.270  Sum_probs=73.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      ++.+|+|+|+|..|+.+++.|+.+|+. |.++|.+.++++.++......+.....+.+.    +.+..    ...|+||.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~-V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~----l~~~~----~~aDivI~  101 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQ-VQIFDINVERLSYLETLFGSRVELLYSNSAE----IETAV----AEADLLIG  101 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHGGGSEEEECCHHH----HHHHH----HTCSEEEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCE-EEEEeCcHHHHHHHHHhhcccceeehhhhhh----HHHhh----ccCcEEEE
Confidence            467899999999999999999999995 9999999999998877543322111122222    22221    25899999


Q ss_pred             cCCCH------HHHHHHHHHhhcCCEEEEeccCCC
Q 048013          175 CAGFN------KTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       175 ~~g~~------~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      ++=-+      -..+..++.|+|+..++.+...++
T Consensus       102 aalipG~~aP~lIt~~mv~~Mk~GSVIVDvaidqG  136 (168)
T d1pjca1         102 AVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQG  136 (168)
T ss_dssp             CCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTC
T ss_pred             eeecCCcccCeeecHHHHhhcCCCcEEEEeecCCC
Confidence            87642      134789999999999999987554

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=98.66  E-value=3.1e-07  Score=69.51  Aligned_cols=107  Identities=22%  Similarity=0.238  Sum_probs=78.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCC-CCcccHHHHHHHHHHHcCCCccE
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      -+|+++||+|+ +++|.++++.+...|+ +|++.++++++.+.+++.+...+ ..| .+.++..+.+.++.+.. +++|+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~v~~~~~~~~~~~-G~iDi   79 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGGAFF-QVDLEDERERVRFVEEAAYAL-GRVDV   79 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTCEEE-ECCTTCHHHHHHHHHHHHHHH-SCCCE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeEE-EEeCCCHHHHHHHHHHHHHhc-CCCCe
Confidence            47899999996 8999999999999999 49999999988888888876543 222 23334445555554434 47999


Q ss_pred             EEEcCCCH-------------------------HHHHHHHHHhhc--CCEEEEeccCCC
Q 048013          172 SFDCAGFN-------------------------KTMSTALSATRA--GGKVCLVGMGHR  203 (216)
Q Consensus       172 vi~~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~~~~  203 (216)
                      +++++|..                         ...+.+++.|+.  +|+++.++....
T Consensus        80 LVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~  138 (248)
T d2d1ya1          80 LVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQG  138 (248)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGG
T ss_pred             EEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccc
Confidence            99998852                         135677778754  579998885444

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.48  E-value=2.4e-07  Score=66.16  Aligned_cols=107  Identities=19%  Similarity=0.299  Sum_probs=74.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcc--------------cHHH-HHH
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQ--------------DIAE-EVE  159 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------~~~~-~~~  159 (216)
                      ++.+|+|+|+|..|+.+++.|+.+|+ +|.+.|.+.++++.+++++...+........              ++.+ .-+
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            45789999999999999999999999 5999999999999999988764421100000              0100 011


Q ss_pred             HHHHHcCCCccEEEEcCCCH------HHHHHHHHHhhcCCEEEEeccCCC
Q 048013          160 KIQKAMGTGIDVSFDCAGFN------KTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~------~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      .+.+. =...|+||.++--+      -..+..++.|+|+..++.+...++
T Consensus       107 ~l~~~-l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqG  155 (183)
T d1l7da1         107 AVLKE-LVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAG  155 (183)
T ss_dssp             HHHHH-HTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGT
T ss_pred             HHHHH-HHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCC
Confidence            12111 13699999876542      134789999999999999986444

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=2.2e-07  Score=64.64  Aligned_cols=53  Identities=23%  Similarity=0.231  Sum_probs=41.7

Q ss_pred             CCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchhhhcchh
Q 048013            6 VKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEP   80 (216)
Q Consensus         6 v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~   80 (216)
                      ...+++||+|+.....                     .+. ..+|+|+||+.+|+++++++|+++++++|+.++.
T Consensus        74 ~~~~~~g~~v~~~~~~---------------------~g~-~~~G~~Aey~~v~~~~vv~lP~~ls~~eAA~l~~  126 (146)
T d1o89a1          74 DPRFHAGQEVLLTGWG---------------------VGE-NHWGGLAEQARVKGDWLVAMPQGQAAKEISLSEA  126 (146)
T ss_dssp             STTCCTTCEEEEECTT---------------------BTT-TBCCSSBSEEEECGGGCEECCTTSCCEEECGGGH
T ss_pred             cCCccceeeEEeeccc---------------------cee-cCCCcceeeeeeeeeeEEECCCCCCHHHHHHHHH
Confidence            3468889999765211                     111 3569999999999999999999999999998764

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=98.39  E-value=5.4e-06  Score=62.85  Aligned_cols=108  Identities=13%  Similarity=0.155  Sum_probs=73.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEE-EeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNI-VKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      +|+++||+|+ +++|.++++.+...|++ |++.++++++++.+    ++.+.... +..|- +.++..+.+.++.+..+.
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~   85 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGAS-VYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG   85 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            6899999996 89999999999999995 99999998876544    23344322 22221 223344445555444455


Q ss_pred             CccEEEEcCCCH-------------------------HHHHHHHHHhh--cCCEEEEeccCCC
Q 048013          168 GIDVSFDCAGFN-------------------------KTMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       168 ~~d~vi~~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      ++|++++++|..                         ...+.+++.|.  .+|+++.++....
T Consensus        86 ~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~  148 (259)
T d2ae2a_          86 KLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSG  148 (259)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGG
T ss_pred             CceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccccccc
Confidence            799999999852                         13356666664  4689999886444

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.38  E-value=8.3e-06  Score=57.16  Aligned_cols=101  Identities=16%  Similarity=0.269  Sum_probs=68.7

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHH-HHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCC
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLS-VAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (216)
                      +...--.+++|||+|+|.+|.++++.+...|++.+.++.|+.++.+ ++++++... ..+    +++.+.   +     .
T Consensus        17 ~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~-~~~----~~~~~~---l-----~   83 (159)
T d1gpja2          17 RELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEA-VRF----DELVDH---L-----A   83 (159)
T ss_dssp             HHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEE-CCG----GGHHHH---H-----H
T ss_pred             HHhCCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhccc-ccc----hhHHHH---h-----c
Confidence            3344567889999999999999999999999988999999987754 667787542 222    222222   2     2


Q ss_pred             CccEEEEcCCCHH------HHHHHHHHhhcCC--EEEEeccCC
Q 048013          168 GIDVSFDCAGFNK------TMSTALSATRAGG--KVCLVGMGH  202 (216)
Q Consensus       168 ~~d~vi~~~g~~~------~~~~~~~~l~~~G--~~v~~g~~~  202 (216)
                      .+|+||.|++.+.      .++..++.-+.+.  .++.++++.
T Consensus        84 ~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr  126 (159)
T d1gpja2          84 RSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPR  126 (159)
T ss_dssp             TCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSC
T ss_pred             cCCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeecCCC
Confidence            5999999999743      2233222222222  678888764

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.36  E-value=3.1e-06  Score=64.25  Aligned_cols=108  Identities=17%  Similarity=0.210  Sum_probs=70.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-H---HcCCCE-EEeCC-CCcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-K---KLGADN-IVKVS-TNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~---~~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~~  167 (216)
                      +|+++||+|+ +++|.++++.+...|+ +|+.+++++++++.+ +   +.+... .+..| ++.++..+.++++.+..++
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   85 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG   85 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence            6899999996 8999999999999999 499999998876644 2   233332 22222 2223444445555444455


Q ss_pred             CccEEEEcCCCHH-------------------------HHHHHHHHhh--cCCEEEEeccCCC
Q 048013          168 GIDVSFDCAGFNK-------------------------TMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       168 ~~d~vi~~~g~~~-------------------------~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      .+|++++++|...                         ..+.+++.|+  .+|+++.++....
T Consensus        86 ~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~  148 (259)
T d1xq1a_          86 KLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAG  148 (259)
T ss_dssp             CCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC----
T ss_pred             CcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccccc
Confidence            7999999998621                         3466667664  4589999886444

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=98.34  E-value=5.4e-06  Score=62.63  Aligned_cols=108  Identities=16%  Similarity=0.220  Sum_probs=76.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEEe-CC-CCcccHHHHHHHHHHHcCCCc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIVK-VS-TNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      -+|+++||+|+ +++|.++++.+...|++ |+..++++++.+.+ ++++...... .+ .+.++..+.+.++.+.. +++
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~-g~i   81 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGAK-VAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRL-GTL   81 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHH-CSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHh-CCC
Confidence            36889999986 89999999999999995 99999999887654 5677655432 21 22234444445544333 479


Q ss_pred             cEEEEcCCCH-------------------------HHHHHHHHHhh-cCCEEEEeccCCC
Q 048013          170 DVSFDCAGFN-------------------------KTMSTALSATR-AGGKVCLVGMGHR  203 (216)
Q Consensus       170 d~vi~~~g~~-------------------------~~~~~~~~~l~-~~G~~v~~g~~~~  203 (216)
                      |++++++|..                         ...+.+++.|+ .+|+++.++....
T Consensus        82 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~  141 (253)
T d1hxha_          82 NVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSS  141 (253)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGG
T ss_pred             CeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhh
Confidence            9999999952                         13467777775 4689999986444

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=4.5e-06  Score=62.73  Aligned_cols=105  Identities=20%  Similarity=0.283  Sum_probs=73.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEE-EeCC-CCcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNI-VKVS-TNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      +|+++||+|+ +++|.++++.+...|++ |+..++++++++.+ ++++.... +..| .+.++..+.+.++.+.. +++|
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~-Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~iD   80 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAK-VIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEF-GEVD   80 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHT-CSCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhccc-CCcc
Confidence            5889999996 89999999999999995 99999999887655 45654422 2222 22334445555554433 4799


Q ss_pred             EEEEcCCCH-------------------------HHHHHHHHHhh--cCCEEEEeccC
Q 048013          171 VSFDCAGFN-------------------------KTMSTALSATR--AGGKVCLVGMG  201 (216)
Q Consensus       171 ~vi~~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~  201 (216)
                      ++++++|..                         ...+.+++.|.  .+|+++.++..
T Consensus        81 ilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~  138 (243)
T d1q7ba_          81 ILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSV  138 (243)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred             eehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecch
Confidence            999998852                         13567777774  46899999853

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=98.31  E-value=7.2e-06  Score=61.99  Aligned_cols=107  Identities=24%  Similarity=0.326  Sum_probs=74.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEE-EeCC-CCcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNI-VKVS-TNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      +|+++||+|+ +++|.++++.+...|++ |+.+++++++.+.+ ++++.... +..| .+.++..+.+.++.+..+ ++|
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g-~iD   81 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGAR-VVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFG-SVD   81 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHS-CCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcC-Ccc
Confidence            6899999996 89999999999999995 99999998887654 55664432 2222 223344455555544344 799


Q ss_pred             EEEEcCCCH-------------------------HHHHHHHHHhh--cCCEEEEeccCCC
Q 048013          171 VSFDCAGFN-------------------------KTMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       171 ~vi~~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      ++++++|..                         ...+.+++.|.  .+|+++.++....
T Consensus        82 ilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~  141 (254)
T d1hdca_          82 GLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAG  141 (254)
T ss_dssp             EEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             EEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchh
Confidence            999999852                         13466666654  3689999986444

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=98.30  E-value=1.7e-05  Score=59.93  Aligned_cols=108  Identities=14%  Similarity=0.179  Sum_probs=72.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEE-EeCCCC-cccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNI-VKVSTN-LQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~-~~~~~~-~~~~~~~~~~~~~~~~~  167 (216)
                      +|+++||+|+ +++|.++++.+...|+ +|+.+++++++++.+    ++.+.... +..|-. .++..+.+.++.+..+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g   83 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG   83 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            6899999995 8999999999999999 599999998776543    34455432 222222 23344445555555556


Q ss_pred             CccEEEEcCCCHH-------------------------HHHHHHHHh--hcCCEEEEeccCCC
Q 048013          168 GIDVSFDCAGFNK-------------------------TMSTALSAT--RAGGKVCLVGMGHR  203 (216)
Q Consensus       168 ~~d~vi~~~g~~~-------------------------~~~~~~~~l--~~~G~~v~~g~~~~  203 (216)
                      .+|++++++|...                         ..+.+.+.+  +.+|+++.++....
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~  146 (258)
T d1ae1a_          84 KLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAG  146 (258)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGG
T ss_pred             CcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccccccccccccc
Confidence            7999999988621                         234444444  45689998885444

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.30  E-value=1.2e-05  Score=60.55  Aligned_cols=104  Identities=19%  Similarity=0.337  Sum_probs=72.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-----HHcCCCEE-EeCC-CCcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-----KKLGADNI-VKVS-TNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-----~~~g~~~~-~~~~-~~~~~~~~~~~~~~~~~~  166 (216)
                      +|+++||+|+ +++|.++++.+...|++ |+++++++++.+.+     ++.+.... +..| .+.++..+.++++.+..+
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCS-VVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFG   82 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5889999996 89999999999999995 99999998775432     34565432 2222 223344445555544343


Q ss_pred             CCccEEEEcCCCH-------------------------HHHHHHHHHhhc--CCEEEEecc
Q 048013          167 TGIDVSFDCAGFN-------------------------KTMSTALSATRA--GGKVCLVGM  200 (216)
Q Consensus       167 ~~~d~vi~~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~  200 (216)
                       ++|++++++|..                         ...+.+++.|+.  +|+++.++.
T Consensus        83 -~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S  142 (251)
T d1vl8a_          83 -KLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGS  142 (251)
T ss_dssp             -CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred             -CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccccccccccccc
Confidence             799999999852                         135777888854  579998875

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.30  E-value=1e-06  Score=65.04  Aligned_cols=103  Identities=23%  Similarity=0.325  Sum_probs=73.1

Q ss_pred             HHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHH
Q 048013           86 HACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAP-RIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        86 ~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~-~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~  160 (216)
                      ..++..+++++++||.+|+|. |..++.+++..|.. .|++++.+++..+.+++    .+...+.....   +..+.   
T Consensus        66 ~~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~---d~~~~---  138 (213)
T d1dl5a1          66 LFMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG---DGYYG---  138 (213)
T ss_dssp             HHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES---CGGGC---
T ss_pred             HHHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccC---chHHc---
Confidence            356778899999999999876 88888898887643 69999999887766643    45554433211   11110   


Q ss_pred             HHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEE
Q 048013          161 IQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCL  197 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~  197 (216)
                      +  .....||+|+...+-....+..++.|+|+|+++.
T Consensus       139 ~--~~~~~fD~I~~~~~~~~~p~~l~~~LkpGG~lv~  173 (213)
T d1dl5a1         139 V--PEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIV  173 (213)
T ss_dssp             C--GGGCCEEEEEECSBBSCCCHHHHHHEEEEEEEEE
T ss_pred             c--ccccchhhhhhhccHHHhHHHHHHhcCCCcEEEE
Confidence            0  1235699999887765555778899999999986

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.3e-05  Score=58.69  Aligned_cols=113  Identities=25%  Similarity=0.330  Sum_probs=75.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCE-EEeCCC-CcccHHHHHHHHHHHcC
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADN-IVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      -.|+++||+|+ +++|..++..+...|+ +|+.+++++++++.+    ++.+... .+..|- +.++..+.++++.+.. 
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~-   82 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI-   82 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT-
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHc-
Confidence            36899999996 8999999999999999 499999999887644    3455442 222222 2233444555554433 


Q ss_pred             CCccEEEEcCCCH-------------------------HHHHHHHHHhhc--CCEEEEeccCCCCCccc
Q 048013          167 TGIDVSFDCAGFN-------------------------KTMSTALSATRA--GGKVCLVGMGHREMTVP  208 (216)
Q Consensus       167 ~~~d~vi~~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~~~~~~~~~  208 (216)
                      +.+|++++++|..                         ...+.+++.|..  .|+++.++......+.+
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~~~~  151 (244)
T d1yb1a_          83 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVP  151 (244)
T ss_dssp             CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHH
T ss_pred             CCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcCCCC
Confidence            4699999999962                         134667777754  47899888666544433

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=8.4e-06  Score=61.45  Aligned_cols=105  Identities=22%  Similarity=0.225  Sum_probs=73.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-cCCCEEEeCC-CCcccHHHHHHHHHHHcCCCccE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-LGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      +|+++||+|+ +++|.++++.+...|++ |++.++++++.+.+.+ ++....+..| .+.++..+.+++..+.. +++|+
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~-g~iDi   82 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGAR-VVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRF-GRLDC   82 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHH-SCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhc-CCCCE
Confidence            6899999996 89999999999999995 9999999998876654 4433333222 22334444555554433 46999


Q ss_pred             EEEcCCCH--------------------------HHHHHHHHHhhc-CCEEEEeccC
Q 048013          172 SFDCAGFN--------------------------KTMSTALSATRA-GGKVCLVGMG  201 (216)
Q Consensus       172 vi~~~g~~--------------------------~~~~~~~~~l~~-~G~~v~~g~~  201 (216)
                      +++++|..                          ...+.+++.|+. +|+++.++..
T Consensus        83 lVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~  139 (250)
T d1ydea1          83 VVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSL  139 (250)
T ss_dssp             EEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCH
T ss_pred             EEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccc
Confidence            99999841                          134667777754 5899988753

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.27  E-value=9.1e-06  Score=61.44  Aligned_cols=107  Identities=22%  Similarity=0.231  Sum_probs=73.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHH-HHHcCCCEEE-eCC-CCcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSV-AKKLGADNIV-KVS-TNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~-~~~~g~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      +|+++||.|+ +++|.++++.+...|++ |+++++++++.+. .++++..... ..| .+.++..+.+++..+.. +++|
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~-g~iD   81 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGAR-VAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRW-GSID   81 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEE-EEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHh-CCcc
Confidence            5789999996 89999999999999995 9999999888764 4667765432 222 23334445555554444 4799


Q ss_pred             EEEEcCCCH-------------------------HHHHHHHHH-hh--cCCEEEEeccCCC
Q 048013          171 VSFDCAGFN-------------------------KTMSTALSA-TR--AGGKVCLVGMGHR  203 (216)
Q Consensus       171 ~vi~~~g~~-------------------------~~~~~~~~~-l~--~~G~~v~~g~~~~  203 (216)
                      ++++++|..                         ...+.+++. ++  .+|+++.++....
T Consensus        82 ilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~  142 (256)
T d1k2wa_          82 ILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAG  142 (256)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGG
T ss_pred             EEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhh
Confidence            999999952                         123455554 43  3589999886444

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=98.26  E-value=9.9e-06  Score=61.38  Aligned_cols=105  Identities=21%  Similarity=0.343  Sum_probs=72.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEE-EeCC-CCcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNI-VKVS-TNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~-~~~~-~~~~~~~~~~~~~~~~~~~  167 (216)
                      +|+++||+|+ +++|.++++.+...|++ |+.+++++++++.+    ++.+.... +..| .+.++..+.++++.+.. +
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g   81 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTA-IALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF-G   81 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh-C
Confidence            6899999996 89999999999999995 99999998877654    33454432 2222 22334455555554434 4


Q ss_pred             CccEEEEcCCCH--------------------------HHHHHHHHHh--hcCCEEEEeccC
Q 048013          168 GIDVSFDCAGFN--------------------------KTMSTALSAT--RAGGKVCLVGMG  201 (216)
Q Consensus       168 ~~d~vi~~~g~~--------------------------~~~~~~~~~l--~~~G~~v~~g~~  201 (216)
                      ++|++++++|..                          ...+.+++.|  +.+|+++.++..
T Consensus        82 ~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~  143 (260)
T d1zema1          82 KIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASM  143 (260)
T ss_dssp             CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred             CCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeech
Confidence            699999998841                          1346666666  457899998753

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.5e-05  Score=59.71  Aligned_cols=105  Identities=20%  Similarity=0.155  Sum_probs=71.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccE
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      -+|+++||+|+ +++|.++++.+...|++ |+.+++++++++.+ ++++....+..+-.++   +.++++.+.. +++|+
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~~-V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~---~~v~~~~~~~-g~iDi   79 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGAR-VVAVSRTQADLDSLVRECPGIEPVCVDLGDW---EATERALGSV-GPVDL   79 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHSTTCEEEECCTTCH---HHHHHHHTTC-CCCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCHHHHHHHHHhcCCCeEEEEeCCCH---HHHHHHHHHh-CCceE
Confidence            37899999996 89999999999999995 99999999887755 5565444333332222   2344443333 47999


Q ss_pred             EEEcCCCH-------------------------HHHHHHHHH-hh--cCCEEEEeccCCC
Q 048013          172 SFDCAGFN-------------------------KTMSTALSA-TR--AGGKVCLVGMGHR  203 (216)
Q Consensus       172 vi~~~g~~-------------------------~~~~~~~~~-l~--~~G~~v~~g~~~~  203 (216)
                      +++++|..                         ...+.+++. ++  .+|+++.++....
T Consensus        80 lVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~  139 (244)
T d1pr9a_          80 LVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCS  139 (244)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGG
T ss_pred             EEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccc
Confidence            99998862                         134556664 33  3589998886444

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.24  E-value=1.1e-06  Score=64.96  Aligned_cols=103  Identities=20%  Similarity=0.263  Sum_probs=74.3

Q ss_pred             HHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEEEeCCCCcccHHHHHHHH
Q 048013           86 HACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNIVKVSTNLQDIAEEVEKI  161 (216)
Q Consensus        86 ~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~  161 (216)
                      .+++...++++++||.+|+|. |..++.+++..|.+ |++++.+++-.+.+    ++++.+++.....   |..+.   +
T Consensus        69 ~ml~~L~l~~g~~VLeIGsGs-GY~taila~l~g~~-V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~g---d~~~g---~  140 (215)
T d1jg1a_          69 IMLEIANLKPGMNILEVGTGS-GWNAALISEIVKTD-VYTIERIPELVEFAKRNLERAGVKNVHVILG---DGSKG---F  140 (215)
T ss_dssp             HHHHHHTCCTTCCEEEECCTT-SHHHHHHHHHHCSC-EEEEESCHHHHHHHHHHHHHTTCCSEEEEES---CGGGC---C
T ss_pred             HHHHhhccCccceEEEecCCC-ChhHHHHHHhhCce-eEEEeccHHHHHHHHHHHHHcCCceeEEEEC---ccccC---C
Confidence            456777899999999999875 77888888877864 99999997654444    5578776554322   11100   1


Q ss_pred             HHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEe
Q 048013          162 QKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~  198 (216)
                        ....+||.++.+.+........++.|+++|+++..
T Consensus       141 --~~~~pfD~Iiv~~a~~~ip~~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         141 --PPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIP  175 (215)
T ss_dssp             --GGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             --cccCcceeEEeecccccCCHHHHHhcCCCCEEEEE
Confidence              13467999998877656667889999999999864

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.24  E-value=5.6e-06  Score=62.13  Aligned_cols=81  Identities=25%  Similarity=0.366  Sum_probs=59.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEEeCC-CCcccHHHHHHHHHHHcCCCccE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      +++++||+|+ +++|.++++.+...|++ |+.+++++++++.+ ++++...+. .| .+.++..+.+.++.+..+ ++|+
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~-V~~~~r~~~~l~~~~~~~~~~~~~-~Dv~~~~~v~~~~~~~~~~~g-~iDi   80 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGAR-LVACDIEEGPLREAAEAVGAHPVV-MDVADPASVERGFAEALAHLG-RLDG   80 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTTTCEEEE-CCTTCHHHHHHHHHHHHHHHS-SCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHcCCeEEE-EecCCHHHHHHHHHHHHHhcC-CceE
Confidence            5799999996 89999999999999995 99999999887765 446654432 22 233445555555554444 6999


Q ss_pred             EEEcCCC
Q 048013          172 SFDCAGF  178 (216)
Q Consensus       172 vi~~~g~  178 (216)
                      +++++|.
T Consensus        81 lVnnAG~   87 (242)
T d1ulsa_          81 VVHYAGI   87 (242)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999985

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=98.23  E-value=1.6e-05  Score=60.05  Aligned_cols=107  Identities=23%  Similarity=0.304  Sum_probs=71.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----Hc-CCCEEE--eCC-CCcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KL-GADNIV--KVS-TNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~-g~~~~~--~~~-~~~~~~~~~~~~~~~~~  165 (216)
                      +|+++||.|+ +++|.++++.+...|++ |+++++++++++.+.    +. +...++  ..| .+.++..+.+.++.+..
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAK-LSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            5789999996 89999999999999995 999999988766442    12 222222  111 23344555555554444


Q ss_pred             CCCccEEEEcCCCH--------------------------HHHHHHHHHhh--cCCEEEEeccCCC
Q 048013          166 GTGIDVSFDCAGFN--------------------------KTMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       166 ~~~~d~vi~~~g~~--------------------------~~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      | ++|++++++|..                          ...+.+++.|+  .+|+++.++....
T Consensus        82 G-~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~  146 (258)
T d1iy8a_          82 G-RIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGG  146 (258)
T ss_dssp             S-CCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGG
T ss_pred             C-CCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhh
Confidence            4 799999998831                          13456666664  5689999886444

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.22  E-value=1.7e-05  Score=59.54  Aligned_cols=108  Identities=19%  Similarity=0.199  Sum_probs=74.5

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEE-eCC-CCcccHHHHHHHHHHHcCCCc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIV-KVS-TNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      -+|+++||+|+ +++|.++++.+...|++ |+.+++++++.+.+ ++++..... ..| .+.++..+.++++.+..+ ++
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g-~i   81 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGAK-VVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFG-GL   81 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHS-CC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhC-CC
Confidence            46899999996 89999999999999995 99999999887654 556544322 122 223344455555544444 69


Q ss_pred             cEEEEcCCCH-------------------------HHHHHHHHHhh--cCCEEEEeccCCC
Q 048013          170 DVSFDCAGFN-------------------------KTMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       170 d~vi~~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      |++++++|..                         ...+.+++.|.  .+|+++.++....
T Consensus        82 dilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~  142 (244)
T d1nffa_          82 HVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEG  142 (244)
T ss_dssp             CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             eEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccccc
Confidence            9999999862                         12355666664  4689999986544

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.2e-05  Score=61.11  Aligned_cols=113  Identities=18%  Similarity=0.159  Sum_probs=71.5

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-----cCCCE-EEeCCCCcccHHH-HHHHHHHHc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-----LGADN-IVKVSTNLQDIAE-EVEKIQKAM  165 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-----~g~~~-~~~~~~~~~~~~~-~~~~~~~~~  165 (216)
                      -+|+++||+|+ +++|.++++.+...|++ |+.+++++++++.+.+     .+... .+..+..+....+ ...... ..
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~-Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~   89 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAH-VVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAG-KL   89 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHH-HH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHH-HH
Confidence            46899999996 89999999999999995 9999999988775522     23322 2222222222222 222222 22


Q ss_pred             CCCccEEEEcCCCH-------------------------HHHHHHHHHhh-cCCEEEEeccCCCCCccc
Q 048013          166 GTGIDVSFDCAGFN-------------------------KTMSTALSATR-AGGKVCLVGMGHREMTVP  208 (216)
Q Consensus       166 ~~~~d~vi~~~g~~-------------------------~~~~~~~~~l~-~~G~~v~~g~~~~~~~~~  208 (216)
                      .+..|+++++.|..                         ...+.+++.|+ .+|+++.++........+
T Consensus        90 ~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~~~~p  158 (269)
T d1xu9a_          90 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYP  158 (269)
T ss_dssp             HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCCT
T ss_pred             hCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhcCCCC
Confidence            34789999887752                         13455666664 478999887655444333

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=98.18  E-value=6.5e-06  Score=58.19  Aligned_cols=75  Identities=13%  Similarity=0.164  Sum_probs=57.2

Q ss_pred             HHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEEeCCCCcccHHHHHHHHHHH
Q 048013           86 HACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        86 ~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      ..++..++.++++|+|+|+|+.+.+++..++..|++.+.++.|+.++.+.+ +.++...+...                 
T Consensus         7 ~~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~-----------------   69 (167)
T d1npya1           7 KLIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSL-----------------   69 (167)
T ss_dssp             HHHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCC-----------------
T ss_pred             HHHHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhcc-----------------
Confidence            456777777889999999999999999999999987799999999887655 44555432111                 


Q ss_pred             cCCCccEEEEcCC
Q 048013          165 MGTGIDVSFDCAG  177 (216)
Q Consensus       165 ~~~~~d~vi~~~g  177 (216)
                      ....+|++|+|++
T Consensus        70 ~~~~~DliINaTp   82 (167)
T d1npya1          70 ENQQADILVNVTS   82 (167)
T ss_dssp             TTCCCSEEEECSS
T ss_pred             cccchhhheeccc
Confidence            1235889999876

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.2e-05  Score=60.37  Aligned_cols=105  Identities=16%  Similarity=0.251  Sum_probs=71.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      -+|+++||.|+ +++|.++++.+...|++ |+.+++++++++.+.+.........+...+   +.+....+. -.++|.+
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~-Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~---~~~~~~~~~-~~~id~l   78 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAK-VIATDINESKLQELEKYPGIQTRVLDVTKK---KQIDQFANE-VERLDVL   78 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHGGGGGSTTEEEEECCTTCH---HHHHHHHHH-CSCCSEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHhccCCceeeeecccc---ccccccccc-cccceeE
Confidence            46899999986 89999999999999994 999999998887765543333333322222   233333322 3479999


Q ss_pred             EEcCCCH-------------------------HHHHHHHHHh--hcCCEEEEeccCCC
Q 048013          173 FDCAGFN-------------------------KTMSTALSAT--RAGGKVCLVGMGHR  203 (216)
Q Consensus       173 i~~~g~~-------------------------~~~~~~~~~l--~~~G~~v~~g~~~~  203 (216)
                      +++.|..                         ...+.+++.+  +..|+++.++....
T Consensus        79 Vn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~  136 (245)
T d2ag5a1          79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVAS  136 (245)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBT
T ss_pred             EecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhh
Confidence            9998862                         1235555544  34689998875433

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=98.14  E-value=5.6e-05  Score=56.40  Aligned_cols=108  Identities=19%  Similarity=0.220  Sum_probs=75.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEEe-CC-CCcccHHHHHHHHHHHcCCCc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIVK-VS-TNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      -.|+++||+|+ +++|.++++.+...|+ +|+.+++++++.+.. ++++.+.... .| .+.++..+.+.++.+.. +++
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~-g~i   80 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEF-GRL   80 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHH-SCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHh-CCc
Confidence            46899999996 8999999999999999 599999999886654 5677654322 12 22234444455554333 479


Q ss_pred             cEEEEcCCCH-------------------------HHHHHHHHHhhcCCEEEEeccCCC
Q 048013          170 DVSFDCAGFN-------------------------KTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       170 d~vi~~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      |+++++++..                         ...+..++.+..++.++.++....
T Consensus        81 DiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~  139 (241)
T d2a4ka1          81 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAG  139 (241)
T ss_dssp             CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTT
T ss_pred             cEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccccc
Confidence            9999998852                         134666777888888887775443

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=2.5e-05  Score=58.88  Aligned_cols=107  Identities=19%  Similarity=0.212  Sum_probs=71.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc----CCCEE--EeCC-CCcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL----GADNI--VKVS-TNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~----g~~~~--~~~~-~~~~~~~~~~~~~~~~~  165 (216)
                      +|+++||+|+ +++|.++++.+...|++ |+.+++++++.+.+ +++    +...+  +..| .+.++..+.++++.+..
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAK-VALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            5899999996 89999999999999995 99999998886654 333    22122  1112 22334455555554444


Q ss_pred             CCCccEEEEcCCCH-----------------HHHHHHHHHhhc-----CCEEEEeccCCC
Q 048013          166 GTGIDVSFDCAGFN-----------------KTMSTALSATRA-----GGKVCLVGMGHR  203 (216)
Q Consensus       166 ~~~~d~vi~~~g~~-----------------~~~~~~~~~l~~-----~G~~v~~g~~~~  203 (216)
                      | ++|++++++|..                 ...+.+++.|..     +|+++.++....
T Consensus        81 G-~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~  139 (254)
T d2gdza1          81 G-RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAG  139 (254)
T ss_dssp             S-CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGG
T ss_pred             C-CcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhh
Confidence            4 799999999962                 133566666643     478999885444

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.13  E-value=3.1e-06  Score=64.00  Aligned_cols=96  Identities=21%  Similarity=0.261  Sum_probs=66.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      .+++++||-+|+|. |.+++.+++ +|+ +|+++|.+++..+.+++    .+....+..    .+..+    .  .....
T Consensus       118 ~~~g~~VLDiGcGs-G~l~i~aa~-~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~----~d~~~----~--~~~~~  184 (254)
T d2nxca1         118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLE----GSLEA----A--LPFGP  184 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEE----SCHHH----H--GGGCC
T ss_pred             cCccCEEEEcccch-hHHHHHHHh-cCC-EEEEEECChHHHHHHHHHHHHcCCceeEEe----ccccc----c--ccccc
Confidence            68999999999875 667666554 787 59999999988776653    455433221    22221    1  12457


Q ss_pred             ccEEEEcCCCH---HHHHHHHHHhhcCCEEEEeccC
Q 048013          169 IDVSFDCAGFN---KTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       169 ~d~vi~~~g~~---~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                      ||+|+.+....   ..++.+.+.|+|+|++++.|+.
T Consensus       185 fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilSgil  220 (254)
T d2nxca1         185 FDLLVANLYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             EEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cchhhhccccccHHHHHHHHHHhcCCCcEEEEEecc
Confidence            99999876542   3446778899999999988753

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=98.12  E-value=2.7e-05  Score=59.40  Aligned_cols=81  Identities=22%  Similarity=0.245  Sum_probs=57.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEE-eCC-CCcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIV-KVS-TNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      +|+++||+|+ +++|.++++.+...|++ |+++++++++++.+ ++++..... ..+ .+.++..+.+.++.+.. +++|
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~-g~id   81 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAK-VAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARF-GKID   81 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHH-SCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHh-CCcc
Confidence            5899999996 89999999999999994 99999999887654 456654322 222 22234444455544333 4799


Q ss_pred             EEEEcCC
Q 048013          171 VSFDCAG  177 (216)
Q Consensus       171 ~vi~~~g  177 (216)
                      ++++++|
T Consensus        82 ilvnnAG   88 (276)
T d1bdba_          82 TLIPNAG   88 (276)
T ss_dssp             EEECCCC
T ss_pred             ccccccc
Confidence            9999987

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=4.8e-05  Score=56.85  Aligned_cols=79  Identities=24%  Similarity=0.204  Sum_probs=56.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      +|+++||+|+ +++|.++++.+...|++ |+.+++++++++.+ ++++....+..+-.++   +.++++.+.. +++|++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~---~~v~~~~~~~-g~iDil   78 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAK-VVAVTRTNSDLVSLAKECPGIEPVCVDLGDW---DATEKALGGI-GPVDLL   78 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHSTTCEEEECCTTCH---HHHHHHHTTC-CCCSEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHhcCCCeEEEEeCCCH---HHHHHHHHHc-CCCeEE
Confidence            6899999996 89999999999999995 99999998887654 4554443333322222   2344443333 479999


Q ss_pred             EEcCCC
Q 048013          173 FDCAGF  178 (216)
Q Consensus       173 i~~~g~  178 (216)
                      ++++|.
T Consensus        79 VnnAg~   84 (242)
T d1cyda_          79 VNNAAL   84 (242)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999885

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.10  E-value=3.9e-05  Score=57.64  Aligned_cols=106  Identities=13%  Similarity=0.151  Sum_probs=72.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEE-EeCC-CCcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNI-VKVS-TNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~-~~~~-~~~~~~~~~~~~~~~~~~~  167 (216)
                      +++.+||+|+ +++|.++++.+...|++ |+++++++++.+.+    ++.+.... +..| .+.++..+.+.++.+.. +
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~-V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~-g   86 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSH-VICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH-K   86 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSE-EEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC-S
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhc-C
Confidence            5788999996 89999999999899994 99999998876544    33454422 2222 22334444555554433 4


Q ss_pred             CccEEEEcCCCH-------------------------HHHHHHHHHh--hcCCEEEEeccCC
Q 048013          168 GIDVSFDCAGFN-------------------------KTMSTALSAT--RAGGKVCLVGMGH  202 (216)
Q Consensus       168 ~~d~vi~~~g~~-------------------------~~~~~~~~~l--~~~G~~v~~g~~~  202 (216)
                      ++|+++++.|..                         ...+.+++.|  +.+|+++.++...
T Consensus        87 ~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~  148 (251)
T d2c07a1          87 NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIV  148 (251)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTH
T ss_pred             CceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHH
Confidence            799999998862                         1346666666  3468999998543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=98.10  E-value=5.1e-05  Score=56.86  Aligned_cols=107  Identities=16%  Similarity=0.179  Sum_probs=72.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHH--HHHHHHcCCCEEE-eCC-CCcccHHHHHHHHHHHcCCCc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYR--LSVAKKLGADNIV-KVS-TNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~--~~~~~~~g~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      +|+++||+|+ +++|.++++.+...|++ |++.++++++  ...+++.+..... ..| .+.++..+.+.++.+.. +++
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~-V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~-G~i   81 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGAD-IAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTF-GRC   81 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH-SCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHc-CCC
Confidence            5789999996 89999999999999995 8888887543  3445667765332 222 22334444455554433 479


Q ss_pred             cEEEEcCCCH-------------------------HHHHHHHHHhh--cCCEEEEeccCCC
Q 048013          170 DVSFDCAGFN-------------------------KTMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       170 d~vi~~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      |++++++|..                         ...+.+++.|.  .+|+++.++....
T Consensus        82 DilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~  142 (247)
T d2ew8a1          82 DILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTY  142 (247)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             CEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchh
Confidence            9999999862                         13466777774  3589998885444

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=5.2e-05  Score=57.16  Aligned_cols=108  Identities=19%  Similarity=0.262  Sum_probs=72.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCC-EEE--eCC-CCcccHHHHHHHHHHH
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGAD-NIV--KVS-TNLQDIAEEVEKIQKA  164 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~-~~~--~~~-~~~~~~~~~~~~~~~~  164 (216)
                      -+++++||+|+ +++|.++++.+...|+ +|+.+++++++++.+    ++.+.. .++  ..| .++++..+.+.++.+.
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            35789999996 8999999999999999 499999999886654    333322 222  212 2334555556655544


Q ss_pred             cCCCccEEEEcCCCH-------------------------HHHHHHHHHhh----cCCEEEEeccCCC
Q 048013          165 MGTGIDVSFDCAGFN-------------------------KTMSTALSATR----AGGKVCLVGMGHR  203 (216)
Q Consensus       165 ~~~~~d~vi~~~g~~-------------------------~~~~~~~~~l~----~~G~~v~~g~~~~  203 (216)
                      . +++|++++++|..                         ...+.+++.+.    .+|+++.++....
T Consensus        87 ~-g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~  153 (257)
T d1xg5a_          87 H-SGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSG  153 (257)
T ss_dssp             H-CCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGG
T ss_pred             c-CCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHh
Confidence            4 4699999999862                         02344555543    2589999986443

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=98.09  E-value=3.5e-05  Score=57.90  Aligned_cols=108  Identities=16%  Similarity=0.163  Sum_probs=72.5

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCC--C-EEEeCCC-CcccHHHHHHHHHHHcCC
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGA--D-NIVKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~--~-~~~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      -+|+++||+|+ +++|.++++.+...|++ |+++++++++.+.+ ++++.  . ..+..|- +.++..+.+.++.+..| 
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G-   81 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAK-VMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFG-   81 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS-
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhC-
Confidence            36899999996 89999999999999995 99999999887755 34432  1 2222222 22334445555544444 


Q ss_pred             CccEEEEcCCCH-------------------------HHHHHHHHHhhc---CCEEEEeccCCC
Q 048013          168 GIDVSFDCAGFN-------------------------KTMSTALSATRA---GGKVCLVGMGHR  203 (216)
Q Consensus       168 ~~d~vi~~~g~~-------------------------~~~~~~~~~l~~---~G~~v~~g~~~~  203 (216)
                      ++|++++++|..                         ...+.+++.|..   +|+++.++....
T Consensus        82 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~  145 (251)
T d1zk4a1          82 PVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEG  145 (251)
T ss_dssp             SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGG
T ss_pred             CceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccce
Confidence            799999999862                         134667777754   358888875443

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=98.08  E-value=4.2e-05  Score=57.99  Aligned_cols=107  Identities=21%  Similarity=0.292  Sum_probs=72.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCC---EEEeCC-CCcccHHHHHHHHHHHcCC
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGAD---NIVKVS-TNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~---~~~~~~-~~~~~~~~~~~~~~~~~~~  167 (216)
                      -+|+++||+|+ +++|.++++.+...|++ |+.+++++++.+.+ ++++..   ..+..| .+.++..+.++++.+..+ 
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g-   81 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGAK-VVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHG-   81 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS-
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcC-
Confidence            36899999996 89999999999999995 99999999887754 444432   222222 233444555555544444 


Q ss_pred             CccEEEEcCCCH---------------------------HHHHHHHHHhh--cCCEEEEeccCC
Q 048013          168 GIDVSFDCAGFN---------------------------KTMSTALSATR--AGGKVCLVGMGH  202 (216)
Q Consensus       168 ~~d~vi~~~g~~---------------------------~~~~~~~~~l~--~~G~~v~~g~~~  202 (216)
                      ++|++++++|..                           ...+.+++.|.  .+|+++.++...
T Consensus        82 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~  145 (268)
T d2bgka1          82 KLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASIS  145 (268)
T ss_dssp             CCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGG
T ss_pred             CcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCcccccccc
Confidence            799999999841                           13467777774  357888876433

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.08  E-value=4.1e-06  Score=63.24  Aligned_cols=102  Identities=15%  Similarity=0.141  Sum_probs=69.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc----CCCEEEeCCCCcccHHHHHHHHHHHcCCCccE
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL----GADNIVKVSTNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      .++||+|+ +++|.++++.+...|+ +|++.+++.++.+.+++.    ....+.    +.++..+.++++.+..| ++|+
T Consensus         1 ~TAlVTGas~GiG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~dv~----~~~~~~~~~~~~~~~~G-~iDi   74 (252)
T d1zmta1           1 STAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPM----SEQEPAELIEAVTSAYG-QVDV   74 (252)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEEC----CCCSHHHHHHHHHHHHS-CCCE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhhhCcEEEeccC----CHHHHHHHHHHHHHHcC-CCCE
Confidence            36889996 7999999999999999 499999988877766443    233222    23455555555544443 7999


Q ss_pred             EEEcCCCH--------------------------HHHHHHHHHhhc--CCEEEEeccCCCC
Q 048013          172 SFDCAGFN--------------------------KTMSTALSATRA--GGKVCLVGMGHRE  204 (216)
Q Consensus       172 vi~~~g~~--------------------------~~~~~~~~~l~~--~G~~v~~g~~~~~  204 (216)
                      +++++|..                          ...+.+++.|+.  +|+++.++.....
T Consensus        75 LVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~  135 (252)
T d1zmta1          75 LVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPF  135 (252)
T ss_dssp             EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTT
T ss_pred             EEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeecccccccc
Confidence            99987641                          124566677743  6899999865543

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=98.08  E-value=5.3e-06  Score=57.38  Aligned_cols=67  Identities=9%  Similarity=-0.069  Sum_probs=46.1

Q ss_pred             CCCCCCCCCCCEEEEcCCcCCCCCcchhCCCCCCCCCCCCCCCCCCCCccceeEEecCCceEECCCCCCchh-----hhc
Q 048013            3 GSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEE-----GAM   77 (216)
Q Consensus         3 G~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~-----aa~   77 (216)
                      .|.++.|++||+|...                               ++|+||.+.+.+.+.++|+..+...     .+.
T Consensus        73 ~S~~~~f~~GD~V~g~-------------------------------~gw~ey~v~~~~~l~kv~~~~~~~~~~~~~~~~  121 (147)
T d1v3va1          73 ESKNSAFPAGSIVLAQ-------------------------------SGWTTHFISDGKGLEKLLTEWPDKKIQYHEHVT  121 (147)
T ss_dssp             EESCTTSCTTCEEEEC-------------------------------CCSBSEEEECSSSCEECCTTCCTTSSCCCEEEE
T ss_pred             EeCCCcccCCCEEEEc-------------------------------cCCEeEEEeccceeeEccccccccccchhhhHh
Confidence            4567789999999854                               7899999999999999987654322     221


Q ss_pred             c-hhhHH-HHHHHHHcCCCCCCEEEE
Q 048013           78 C-EPLSV-GVHACRRANIGPETNVLI  101 (216)
Q Consensus        78 ~-~~~~~-a~~~l~~~~~~~~~~vlv  101 (216)
                      + .+..| ||..+ ....+.|++|++
T Consensus       122 lG~~Gmtaay~gl-~~~~k~Getvv~  146 (147)
T d1v3va1         122 KGFENMPAAFIEM-LNGANLGKAVVT  146 (147)
T ss_dssp             ECGGGHHHHHHHH-HTTCCSSEEEEE
T ss_pred             ccccchHHHHHHh-hCCCCCCCEEEe
Confidence            2 23334 55444 233467999886

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.07  E-value=1.6e-05  Score=59.88  Aligned_cols=107  Identities=16%  Similarity=0.264  Sum_probs=69.3

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----HcCCCEEEeCCC-CcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-G--PIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KLGADNIVKVST-NLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g--~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~  166 (216)
                      +|+++||+|+ |  ++|.++++.+...|++ |++.+++++..+.++    ..+....+..+- +.++..+.+.++.+.. 
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~-V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-   84 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAE-VALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAF-   84 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhc-
Confidence            6899999996 5  7999999999999995 888888876554442    234444443332 2334444455544444 


Q ss_pred             CCccEEEEcCCCH-----------------------------HHHHHHHHHhhcCCEEEEeccCCC
Q 048013          167 TGIDVSFDCAGFN-----------------------------KTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       167 ~~~d~vi~~~g~~-----------------------------~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      +++|+++++++..                             ...+.+.+.++.+|+++.++....
T Consensus        85 g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~  150 (256)
T d1ulua_          85 GGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYAS  150 (256)
T ss_dssp             SSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGG
T ss_pred             CCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHh
Confidence            4799999998741                             012334445667899998875443

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=98.06  E-value=4.6e-05  Score=57.50  Aligned_cols=107  Identities=21%  Similarity=0.291  Sum_probs=70.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh-HHHHHH-----HHcCCCEEEe-CC-CCcccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDD-YRLSVA-----KKLGADNIVK-VS-TNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~-~~~~~~-----~~~g~~~~~~-~~-~~~~~~~~~~~~~~~~~  165 (216)
                      +|+++||+|+ +++|.++++.+...|++ |+++++++ +..+.+     ++.+...... .| .+.++..+.++++.+..
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~-V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGAD-IVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            6889999986 89999999999999995 88888864 443332     2345443321 11 22334444555554444


Q ss_pred             CCCccEEEEcCCCH-------------------------HHHHHHHHHhhc--CCEEEEeccCCC
Q 048013          166 GTGIDVSFDCAGFN-------------------------KTMSTALSATRA--GGKVCLVGMGHR  203 (216)
Q Consensus       166 ~~~~d~vi~~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~~~~  203 (216)
                       +++|++++++|..                         ...+.+++.|+.  +|+++.++....
T Consensus        82 -G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~  145 (260)
T d1x1ta1          82 -GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHG  145 (260)
T ss_dssp             -SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             -CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccc
Confidence             3699999999852                         134667777754  589998875444

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=4.5e-05  Score=57.44  Aligned_cols=106  Identities=16%  Similarity=0.255  Sum_probs=70.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEE-EeCCC-CcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNI-VKVST-NLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~~~~  167 (216)
                      +|+++||+|+ +++|.++++.+...|++ |+.+++++++.+.+    ++.+.... +..|- +.++..+.+.++.+..+ 
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g-   87 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLG-   87 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcC-
Confidence            6899999996 89999999999999995 99999998876543    44555432 22222 22334444555544444 


Q ss_pred             CccEEEEcCCCH------------------------HHHHHHHHHhhc--CCEEEEeccCC
Q 048013          168 GIDVSFDCAGFN------------------------KTMSTALSATRA--GGKVCLVGMGH  202 (216)
Q Consensus       168 ~~d~vi~~~g~~------------------------~~~~~~~~~l~~--~G~~v~~g~~~  202 (216)
                      ++|++++++|..                        ...+.+++.|..  +|+++.++...
T Consensus        88 ~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~  148 (255)
T d1fmca_          88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMA  148 (255)
T ss_dssp             SCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred             CCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccc
Confidence            799999998862                        123556666643  56888776433

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=98.05  E-value=5.6e-05  Score=57.11  Aligned_cols=82  Identities=24%  Similarity=0.259  Sum_probs=55.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChH-HHH----HHHHcCCCEEE-eCC-CCcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDY-RLS----VAKKLGADNIV-KVS-TNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~-~~~----~~~~~g~~~~~-~~~-~~~~~~~~~~~~~~~~~~  166 (216)
                      +|+++||+|+ +++|.++++.+...|++ |++++++.+ +.+    .+++.+..... ..| .+.++..+.++++.+.. 
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~-Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~-   83 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAK-VVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF-   83 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh-
Confidence            6799999986 89999999999999995 888887743 333    33455654322 222 22334444455554444 


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      +++|++++++|.
T Consensus        84 G~iDiLVnnAG~   95 (261)
T d1geea_          84 GKLDVMINNAGL   95 (261)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEeecccee
Confidence            379999999986

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.04  E-value=8.8e-06  Score=60.25  Aligned_cols=101  Identities=20%  Similarity=0.206  Sum_probs=70.0

Q ss_pred             HHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc--CCCEEEeCCCC-cccHHHHHHHHH
Q 048013           86 HACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL--GADNIVKVSTN-LQDIAEEVEKIQ  162 (216)
Q Consensus        86 ~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~--g~~~~~~~~~~-~~~~~~~~~~~~  162 (216)
                      .+++...++++++||-+|+|. |..++.+++. +. .|++++.+++..+.+++.  ....+.....+ ...+        
T Consensus        61 ~ml~~L~l~~g~~VLdIG~Gs-Gy~ta~La~l-~~-~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~--------  129 (224)
T d1vbfa_          61 FMLDELDLHKGQKVLEIGTGI-GYYTALIAEI-VD-KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY--------  129 (224)
T ss_dssp             HHHHHTTCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC--------
T ss_pred             HHHHHhhhcccceEEEecCCC-CHHHHHHHHH-hc-ccccccccHHHHHHHHHHHhcccccccccCchhhcc--------
Confidence            356778899999999999874 7777777775 44 599999999888877653  22222211111 1111        


Q ss_pred             HHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEe
Q 048013          163 KAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~  198 (216)
                       ....+||.|+-+.+.+...+..++.|++||+++..
T Consensus       130 -~~~~pfD~Iiv~~a~~~ip~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         130 -EEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             -GGGCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             -hhhhhHHHHHhhcchhhhhHHHHHhcCCCCEEEEE
Confidence             12357999998777656667788999999999874

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=98.04  E-value=2.4e-05  Score=58.94  Aligned_cols=107  Identities=18%  Similarity=0.145  Sum_probs=66.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH---HH-cCCCEEE--eCCCC-c-ccHHHHHHHHHHHc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA---KK-LGADNIV--KVSTN-L-QDIAEEVEKIQKAM  165 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~---~~-~g~~~~~--~~~~~-~-~~~~~~~~~~~~~~  165 (216)
                      +|+++||+|+ +++|.+++..+...|++ |+++.++.++.+.+   ++ .+...+.  ..+.. + .+..+.+.++.+..
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~-vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   82 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLK-NFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCS-EEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence            5899999986 89999999999999997 66664544433322   22 3332322  22211 2 23444455554444


Q ss_pred             CCCccEEEEcCCCH-----------------HHHHHHHHHhh-----cCCEEEEeccCCC
Q 048013          166 GTGIDVSFDCAGFN-----------------KTMSTALSATR-----AGGKVCLVGMGHR  203 (216)
Q Consensus       166 ~~~~d~vi~~~g~~-----------------~~~~~~~~~l~-----~~G~~v~~g~~~~  203 (216)
                      + ++|++++++|..                 ...+.+++.|.     ++|+++.++....
T Consensus        83 g-~iDilvnnAG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~  141 (254)
T d1sbya1          83 K-TVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTG  141 (254)
T ss_dssp             S-CCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGG
T ss_pred             C-CCCEEEeCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhh
Confidence            4 799999999962                 13456666663     2588888875443

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.04  E-value=3.1e-05  Score=58.44  Aligned_cols=106  Identities=21%  Similarity=0.315  Sum_probs=71.8

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEE-EcCChHHHH----HHHHcCCCEE-EeCCC-CcccHHHHHHHHHHH
Q 048013           93 IGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVI-VDVDDYRLS----VAKKLGADNI-VKVST-NLQDIAEEVEKIQKA  164 (216)
Q Consensus        93 ~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~-~~~~~~~~~----~~~~~g~~~~-~~~~~-~~~~~~~~~~~~~~~  164 (216)
                      .-.|+++||.|+ +++|.++++.+...|++ |++ ..++++..+    .+++.|.+.. +..+- +.++..+.+.++.+.
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~-Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHH
Confidence            457899999986 89999999999999996 655 456655543    3345666543 22222 233444555555444


Q ss_pred             cCCCccEEEEcCCCH-------------------------HHHHHHHHHhhcCCEEEEecc
Q 048013          165 MGTGIDVSFDCAGFN-------------------------KTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       165 ~~~~~d~vi~~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      .+ ++|++++++|..                         ...+.+++.|+.+|+++.+..
T Consensus        82 ~g-~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s  141 (259)
T d1ja9a_          82 FG-GLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSS  141 (259)
T ss_dssp             HS-CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cC-CCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccc
Confidence            44 699999999962                         145778888888888877764

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.03  E-value=6.2e-05  Score=58.10  Aligned_cols=104  Identities=19%  Similarity=0.283  Sum_probs=69.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC---------hHHHHH-H---HHcCCCEEEeCCCCcccHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVD---------DYRLSV-A---KKLGADNIVKVSTNLQDIAEEVEK  160 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~---------~~~~~~-~---~~~g~~~~~~~~~~~~~~~~~~~~  160 (216)
                      +|+++||+|+ +++|.++++.+...|++ |++.+++         ++..+. .   ...+.....++. +.++..+.+.+
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga~-Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~v~~   83 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGAL-VVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYD-SVEAGEKLVKT   83 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECC-CGGGHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccc-hHHHHHHHHHH
Confidence            5899999996 89999999999999995 8887654         233322 2   233444444442 33455555655


Q ss_pred             HHHHcCCCccEEEEcCCCH-------------------------HHHHHHHHHhh--cCCEEEEeccC
Q 048013          161 IQKAMGTGIDVSFDCAGFN-------------------------KTMSTALSATR--AGGKVCLVGMG  201 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~  201 (216)
                      ..+.. +++|++++++|..                         ...+.+++.|+  .+|+++.++..
T Consensus        84 ~~~~~-G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~  150 (302)
T d1gz6a_          84 ALDTF-GRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASA  150 (302)
T ss_dssp             HHHHT-SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred             HHHHc-CCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCCh
Confidence            54433 4799999999852                         13467777774  45899998853

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.02  E-value=6e-05  Score=57.23  Aligned_cols=106  Identities=19%  Similarity=0.228  Sum_probs=72.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC-hHHHH----HHHHcCCCEEEe-CC-CCcccHHHHHHHHHHHc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVD-DYRLS----VAKKLGADNIVK-VS-TNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~-~~~~~----~~~~~g~~~~~~-~~-~~~~~~~~~~~~~~~~~  165 (216)
                      -+|+++||.|+ +++|.++++.+...|++ |++.+++ ++..+    .+++.+.+.... .+ .+.++..+.++++.+..
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga~-Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~   94 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF   94 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHh
Confidence            35899999996 89999999999999995 7777665 44333    334556554332 22 22344555555555444


Q ss_pred             CCCccEEEEcCCCH-------------------------HHHHHHHHHhhcCCEEEEeccC
Q 048013          166 GTGIDVSFDCAGFN-------------------------KTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       166 ~~~~d~vi~~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                       .++|+++.+.+..                         ...+.+++.|..+|+++.++..
T Consensus        95 -g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~  154 (272)
T d1g0oa_          95 -GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSI  154 (272)
T ss_dssp             -SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCG
T ss_pred             -CCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccc
Confidence             4799999998862                         1357788888889988888643

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.02  E-value=8.5e-06  Score=61.32  Aligned_cols=102  Identities=18%  Similarity=0.224  Sum_probs=69.7

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChHHHHHHHH----c-CCCEEEeCCCCcccHHHHHHHH
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFGAP-RIVIVDVDDYRLSVAKK----L-GADNIVKVSTNLQDIAEEVEKI  161 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~-~vv~~~~~~~~~~~~~~----~-g~~~~~~~~~~~~~~~~~~~~~  161 (216)
                      +...+++||++||-.|+|. |.+++.+|+..|.. +|++++.+++..+.+++    + +...+.....   |+.+    .
T Consensus        78 i~~l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~---Di~~----~  149 (250)
T d1yb2a1          78 IMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRS---DIAD----F  149 (250)
T ss_dssp             ---CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECS---CTTT----C
T ss_pred             HHHcCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEe---eeec----c
Confidence            3567899999999999875 77778888876543 79999999988887754    2 2333322211   2111    1


Q ss_pred             HHHcCCCccEEEEcCCC-HHHHHHHHHHhhcCCEEEEec
Q 048013          162 QKAMGTGIDVSFDCAGF-NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g~-~~~~~~~~~~l~~~G~~v~~g  199 (216)
                        .....||.|+-.... ...++.+.+.|+|+|+++.+.
T Consensus       150 --~~~~~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~  186 (250)
T d1yb2a1         150 --ISDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYL  186 (250)
T ss_dssp             --CCSCCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             --cccceeeeeeecCCchHHHHHHHHHhcCCCceEEEEe
Confidence              124579998865554 467789999999999998764

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.01  E-value=2.2e-05  Score=60.34  Aligned_cols=102  Identities=15%  Similarity=0.204  Sum_probs=70.4

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEEEeCCCCcccHHHHHHHHH
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~  162 (216)
                      .+++.++++|++||-+|+|- |..++.+|+..|+ +|++++.+++..+.+    ++.|....+....  .++    .   
T Consensus        53 ~~~~l~l~~G~~VLDiGCG~-G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~--~d~----~---  121 (291)
T d1kpia_          53 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI--QGW----E---  121 (291)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEE--CCG----G---
T ss_pred             HHHhcCCCCCCEEEEecCcc-hHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhh--hcc----c---
Confidence            34778999999999999874 4567788888999 599999999876554    4456543222111  111    0   


Q ss_pred             HHcCCCccEEEE-----cCCC----------HHHHHHHHHHhhcCCEEEEecc
Q 048013          163 KAMGTGIDVSFD-----CAGF----------NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       163 ~~~~~~~d~vi~-----~~g~----------~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                       .....||.|+.     .+++          +..++.+.+.|+|+|++++-.+
T Consensus       122 -~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i  173 (291)
T d1kpia_         122 -EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI  173 (291)
T ss_dssp             -GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred             -ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence             13457998775     3332          3567889999999999986543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.98  E-value=7.9e-05  Score=56.66  Aligned_cols=82  Identities=26%  Similarity=0.331  Sum_probs=56.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCC--EE--EeCC-CCcccHHHHHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGAD--NI--VKVS-TNLQDIAEEVEKIQKA  164 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~--~~--~~~~-~~~~~~~~~~~~~~~~  164 (216)
                      +|+++||+|+ +++|.++++.+...|++ |+++++++++++.+    ++.+..  .+  +..| .+.++..+.+.+..+.
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQ-VTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            5899999996 89999999999999995 99999998876644    333332  22  2222 2233444455555444


Q ss_pred             cCCCccEEEEcCCC
Q 048013          165 MGTGIDVSFDCAGF  178 (216)
Q Consensus       165 ~~~~~d~vi~~~g~  178 (216)
                      .| ++|++++++|.
T Consensus        82 ~G-~iDilVnnAG~   94 (274)
T d1xhla_          82 FG-KIDILVNNAGA   94 (274)
T ss_dssp             HS-CCCEEEECCCC
T ss_pred             cC-CceEEEeeccc
Confidence            43 79999999874

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.98  E-value=4.9e-05  Score=57.78  Aligned_cols=82  Identities=27%  Similarity=0.325  Sum_probs=56.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----HcCCC--EE--EeCC-CCcccHHHHHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KLGAD--NI--VKVS-TNLQDIAEEVEKIQKA  164 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~g~~--~~--~~~~-~~~~~~~~~~~~~~~~  164 (216)
                      +|+++||+|+ +++|.++++.+...|++ |+.+++++++++.+.    +.+..  .+  +..| .+.++..+.+.++.+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~-V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGAN-VTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            5789999996 89999999999999994 999999998876542    23321  12  2222 2233444455555444


Q ss_pred             cCCCccEEEEcCCC
Q 048013          165 MGTGIDVSFDCAGF  178 (216)
Q Consensus       165 ~~~~~d~vi~~~g~  178 (216)
                      . +++|++++++|.
T Consensus        83 ~-g~iDilvnnAG~   95 (272)
T d1xkqa_          83 F-GKIDVLVNNAGA   95 (272)
T ss_dssp             H-SCCCEEEECCCC
T ss_pred             h-CCceEEEeCCcc
Confidence            3 479999999874

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.95  E-value=2.2e-05  Score=58.48  Aligned_cols=102  Identities=21%  Similarity=0.273  Sum_probs=65.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEE-eCCCCcccHHHH-HHHHHHH-cCCCcc
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIV-KVSTNLQDIAEE-VEKIQKA-MGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~-~~~~~~~-~~~~~d  170 (216)
                      ++++|||+|+ +++|.++++.+...|++ |+.+++++....      ..... ..+....+..+. ..++.+. ...++|
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~-V~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD   73 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWW-VASIDVVENEEA------SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVD   73 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSCCTTS------SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCccccc------cccceeecccCcHHHHHHHHHHHHHHhCCCCce
Confidence            4789999996 89999999999999995 888887654321      11111 111111121222 2222222 345699


Q ss_pred             EEEEcCCCH--------------------------HHHHHHHHHhhcCCEEEEeccCCC
Q 048013          171 VSFDCAGFN--------------------------KTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       171 ~vi~~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      ++++++|..                          ...+.+++.|+.+|+++.++....
T Consensus        74 ~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~  132 (236)
T d1dhra_          74 AILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAA  132 (236)
T ss_dssp             EEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred             EEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHH
Confidence            999998841                          134667778889999999985443

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.94  E-value=0.0001  Score=55.72  Aligned_cols=82  Identities=24%  Similarity=0.252  Sum_probs=55.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCC--EE--EeCC-CCcccHHHHHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGAD--NI--VKVS-TNLQDIAEEVEKIQKA  164 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~--~~--~~~~-~~~~~~~~~~~~~~~~  164 (216)
                      +|+.+||+|+ +++|.++++.+...|++ |+++++++++++.+    ++.+..  .+  +..| .+.++..+.+.+..+.
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAK-VTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            6889999996 89999999999999995 99999998886654    223322  12  2222 2233444455555433


Q ss_pred             cCCCccEEEEcCCC
Q 048013          165 MGTGIDVSFDCAGF  178 (216)
Q Consensus       165 ~~~~~d~vi~~~g~  178 (216)
                      . +++|++++++|.
T Consensus        83 ~-g~iDilvnnAG~   95 (264)
T d1spxa_          83 F-GKLDILVNNAGA   95 (264)
T ss_dssp             H-SCCCEEEECCC-
T ss_pred             h-CCCCEeeccccc
Confidence            3 479999999874

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.93  E-value=0.00026  Score=46.22  Aligned_cols=92  Identities=12%  Similarity=0.010  Sum_probs=63.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh--HHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD--YRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .+++|||+|+|.+|..-++.+...|++ |++++...  +...++++-... .........+            -.+++++
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~-v~v~~~~~~~~~~~~~~~~~i~-~~~~~~~~~d------------l~~~~lv   76 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGAR-LTVNALTFIPQFTVWANEGMLT-LVEGPFDETL------------LDSCWLA   76 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBE-EEEEESSCCHHHHHHHTTTSCE-EEESSCCGGG------------GTTCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEeccCChHHHHHHhcCCce-eeccCCCHHH------------hCCCcEE
Confidence            578999999999999999999999996 66664433  222333322222 2221111111            1368999


Q ss_pred             EEcCCCHHHHHHHHHHhhcCCEEEEecc
Q 048013          173 FDCAGFNKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       173 i~~~g~~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      +-++++...-....+.+++.|.++.+.-
T Consensus        77 ~~at~d~~~n~~i~~~a~~~~ilVNv~D  104 (113)
T d1pjqa1          77 IAATDDDTVNQRVSDAAESRRIFCNVVD  104 (113)
T ss_dssp             EECCSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred             eecCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence            9999997776788899999999998763

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.92  E-value=9.5e-06  Score=60.63  Aligned_cols=102  Identities=17%  Similarity=0.189  Sum_probs=67.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      .++++||+|+ +++|.++++.+...|++ |+++++++++.+.+..    ...++ .+.++..+.+.++.+.. +++|+++
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~~~----~~~Dv-~~~~~v~~~~~~~~~~~-g~iDiLV   78 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHK-VAVTHRGSGAPKGLFG----VEVDV-TDSDAVDRAFTAVEEHQ-GPVEVLV   78 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSSCCCTTSEE----EECCT-TCHHHHHHHHHHHHHHH-SSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCcchhcCceE----EEEec-CCHHHHHHHHHHHHHhc-CCceEEE
Confidence            6799999996 89999999999999995 9999998765432211    11122 22334445555555444 3799999


Q ss_pred             EcCCCH-------------------------HHHHHHHHHhhc--CCEEEEeccCCC
Q 048013          174 DCAGFN-------------------------KTMSTALSATRA--GGKVCLVGMGHR  203 (216)
Q Consensus       174 ~~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~~~~  203 (216)
                      +++|..                         ...+.+++.|..  +|+++.++....
T Consensus        79 nnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~  135 (237)
T d1uzma1          79 SNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSG  135 (237)
T ss_dssp             EECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC
T ss_pred             eeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhh
Confidence            999852                         123556666643  468998886544

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.7e-05  Score=57.63  Aligned_cols=104  Identities=18%  Similarity=0.158  Sum_probs=69.7

Q ss_pred             HHHHHc--CCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChHHHHHHHH----cCC-----CEEEeCCCCccc
Q 048013           86 HACRRA--NIGPETNVLIMGSGPIGLVTMLAARAFGAP-RIVIVDVDDYRLSVAKK----LGA-----DNIVKVSTNLQD  153 (216)
Q Consensus        86 ~~l~~~--~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~-~vv~~~~~~~~~~~~~~----~g~-----~~~~~~~~~~~~  153 (216)
                      .+++..  .+++|++||.+|+|. |..++.+++..|.. +|+.++.+++-.+.+++    .+.     ..+....   .|
T Consensus        65 ~~le~L~~~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~---gD  140 (224)
T d1i1na_          65 YALELLFDQLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVV---GD  140 (224)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEE---SC
T ss_pred             HHHHHHhhccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEE---ee
Confidence            455544  689999999999875 88888888876633 79999999887666532    222     1111110   11


Q ss_pred             HHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEe
Q 048013          154 IAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~  198 (216)
                      ....   +  .....||.|+.+...+...+..++.|+|+|+++..
T Consensus       141 ~~~~---~--~~~~~fD~I~~~~~~~~ip~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         141 GRMG---Y--AEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP  180 (224)
T ss_dssp             GGGC---C--GGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             cccc---c--chhhhhhhhhhhcchhhcCHHHHhhcCCCcEEEEE
Confidence            1000   0  12357999998877656667889999999999863

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=5e-05  Score=57.76  Aligned_cols=103  Identities=25%  Similarity=0.357  Sum_probs=66.5

Q ss_pred             CCEE-EEEcC-CHHHHHHHHHH-HHcCCCeEEEEcCChHHHHHH----HHcCCC-EEEeCC-CCcccHHHHHHHHHHHcC
Q 048013           96 ETNV-LIMGS-GPIGLVTMLAA-RAFGAPRIVIVDVDDYRLSVA----KKLGAD-NIVKVS-TNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        96 ~~~v-lv~Ga-g~~G~~~i~~a-~~~g~~~vv~~~~~~~~~~~~----~~~g~~-~~~~~~-~~~~~~~~~~~~~~~~~~  166 (216)
                      |++| ||+|+ +++|.++++.+ +..|+ +|+..++++++.+.+    ++.+.. ..+..| ++.++..+.+.++.+.. 
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~-   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY-   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhc-
Confidence            5677 66686 89999988755 44577 599999999886543    333433 222222 22233444445554433 


Q ss_pred             CCccEEEEcCCCH-------------------------HHHHHHHHHhhcCCEEEEecc
Q 048013          167 TGIDVSFDCAGFN-------------------------KTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       167 ~~~d~vi~~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      +++|++|+++|..                         ...+.+++.|+++|+++.++.
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            4799999999851                         134566777788999998875

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.88  E-value=0.00019  Score=50.22  Aligned_cols=46  Identities=33%  Similarity=0.333  Sum_probs=40.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChHHHHHHHHcCCC
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAP-RIVIVDVDDYRLSVAKKLGAD  142 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~-~vv~~~~~~~~~~~~~~~g~~  142 (216)
                      ++|+|+|+|.+|...+..++..|.. +|++.|++++.++.+++.+..
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~   48 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII   48 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcc
Confidence            3689999999999999999988863 689999999999999888763

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.87  E-value=7e-05  Score=56.74  Aligned_cols=104  Identities=18%  Similarity=0.243  Sum_probs=72.8

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHH
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAP-RIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKI  161 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~-~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~  161 (216)
                      .+...++++|++||-.|+|. |.+++.+|+..|.. +|+.+|.+++..+.+++    ++....+....  .+..+   . 
T Consensus        95 Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~--~d~~~---~-  167 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKV--RDISE---G-  167 (266)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEEC--CCGGG---C-
T ss_pred             HHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEe--ccccc---c-
Confidence            45778899999999999876 77888888887633 69999999988777643    55432111111  11110   0 


Q ss_pred             HHHcCCCccEEEEcCCC-HHHHHHHHHHhhcCCEEEEec
Q 048013          162 QKAMGTGIDVSFDCAGF-NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       162 ~~~~~~~~d~vi~~~g~-~~~~~~~~~~l~~~G~~v~~g  199 (216)
                        .....+|.|+--+.. ...++.+.+.|+|+|+++.+.
T Consensus       168 --~~~~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~  204 (266)
T d1o54a_         168 --FDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVC  204 (266)
T ss_dssp             --CSCCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             --ccccceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEe
Confidence              124568887777776 457799999999999998764

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.87  E-value=0.00015  Score=53.63  Aligned_cols=97  Identities=19%  Similarity=0.227  Sum_probs=64.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      +++++||+|+ +++|.++++.+...|++ |+.+++++++++   +.+..... .+ ......    ++.+.. +.+|+++
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~-V~~~~r~~~~l~---~~~~~~~~-~D-v~~~~~----~~~~~~-g~iD~lV   71 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAE-VTICARNEELLK---RSGHRYVV-CD-LRKDLD----LLFEKV-KEVDILV   71 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHH---HTCSEEEE-CC-TTTCHH----HHHHHS-CCCSEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHH---hcCCcEEE-cc-hHHHHH----HHHHHh-CCCcEEE
Confidence            5799999996 89999999999999995 999999876544   44443322 11 112222    222223 4699999


Q ss_pred             EcCCCH-------------------------HHHHHHHHHhh--cCCEEEEeccCC
Q 048013          174 DCAGFN-------------------------KTMSTALSATR--AGGKVCLVGMGH  202 (216)
Q Consensus       174 ~~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~~  202 (216)
                      +++|..                         ...+.+++.|+  ..|+++.++...
T Consensus        72 nnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~  127 (234)
T d1o5ia_          72 LNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFS  127 (234)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred             ecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccccccccccccccc
Confidence            999852                         13456666664  457888887533

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.84  E-value=0.0001  Score=51.71  Aligned_cols=98  Identities=13%  Similarity=0.111  Sum_probs=65.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      ++++|+|+|+|.+|..+++.+...|.+ |++++++.++.+.+.+ ++.........  .. .......    -...|.++
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~-V~v~dr~~~~a~~l~~~~~~~~~~~~~~--~~-~~~~~~~----i~~~~~~i   72 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIK-VTVACRTLESAKKLSAGVQHSTPISLDV--ND-DAALDAE----VAKHDLVI   72 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCE-EEEEESCHHHHHHHHTTCTTEEEEECCT--TC-HHHHHHH----HTTSSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEECChHHHHHHHhcccccccccccc--cc-hhhhHhh----hhccceeE
Confidence            368999999999999999999989995 9999999999877654 44433332211  11 1112221    13578888


Q ss_pred             EcCCCHHHHHHHHHHhhcCCEEEEecc
Q 048013          174 DCAGFNKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       174 ~~~g~~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      .++...........+++.+..++....
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (182)
T d1e5qa1          73 SLIPYTFHATVIKSAIRQKKHVVTTSY   99 (182)
T ss_dssp             ECSCGGGHHHHHHHHHHHTCEEECSSC
T ss_pred             eeccchhhhHHHHHHHhhccceeeccc
Confidence            888764444555555666667766553

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.83  E-value=0.0004  Score=51.99  Aligned_cols=79  Identities=27%  Similarity=0.404  Sum_probs=53.8

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEE-EeCC-CCcccHHHHHHHHHHHcCCCcc
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNI-VKVS-TNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .+||+|+ +++|.++++.+...|++ |+.+++++++.+.+    ++.+.... +..| .+.++..+.+.++.+.. +++|
T Consensus         3 ValITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~iD   80 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGFA-VAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTL-GGFD   80 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHT-TCCC
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHh-CCcc
Confidence            4588886 89999999999999994 99999999876544    34554432 2222 22333444555554433 4799


Q ss_pred             EEEEcCCC
Q 048013          171 VSFDCAGF  178 (216)
Q Consensus       171 ~vi~~~g~  178 (216)
                      ++++++|.
T Consensus        81 ilVnnAG~   88 (255)
T d1gega_          81 VIVNNAGV   88 (255)
T ss_dssp             EEEECCCC
T ss_pred             EEEecccc
Confidence            99999885

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=2.8e-05  Score=58.06  Aligned_cols=103  Identities=22%  Similarity=0.266  Sum_probs=69.7

Q ss_pred             HHHH-HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCE-EEeCCCCcccHHHHH
Q 048013           85 VHAC-RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADN-IVKVSTNLQDIAEEV  158 (216)
Q Consensus        85 ~~~l-~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~~  158 (216)
                      +..+ +..+++++++||-+|+|. |..+..+++..|+ +|+.+|.+++..+.+++    .|... +.....   ++.   
T Consensus        22 ~~~l~~~~~l~pg~~VLDiGCG~-G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~---d~~---   93 (245)
T d1nkva_          22 YATLGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHN---DAA---   93 (245)
T ss_dssp             HHHHHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES---CCT---
T ss_pred             HHHHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHhcCC-EEEEEecccchhhHHHHHHHHhhccccchhhhh---HHh---
Confidence            3444 678899999999999875 6667778888888 59999999887665543    46542 111111   111   


Q ss_pred             HHHHHHcCCCccEEEEcCC------CHHHHHHHHHHhhcCCEEEEe
Q 048013          159 EKIQKAMGTGIDVSFDCAG------FNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g------~~~~~~~~~~~l~~~G~~v~~  198 (216)
                       ++  .....||.|+..-.      -...++.+.+.|+|+|++++.
T Consensus        94 -~~--~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~  136 (245)
T d1nkva_          94 -GY--VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIG  136 (245)
T ss_dssp             -TC--CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEE
T ss_pred             -hc--cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEE
Confidence             11  13467999886322      246778899999999999864

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.81  E-value=0.00011  Score=52.08  Aligned_cols=93  Identities=16%  Similarity=0.086  Sum_probs=60.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEe--------CCCCcccHHHHHHHHHHHcCC
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVK--------VSTNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~  167 (216)
                      .++|.|+|+|.+|++.+..+...|.+ |.+.++++++.+.+.+.+......        ......+    +.+.    -.
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~e~----~~   71 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQS-VLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSD----IGLA----VK   71 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESC----HHHH----HT
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhh----hHhH----hc
Confidence            36899999999999999999999985 999999999988887655322111        0000012    1221    13


Q ss_pred             CccEEEEcCCCHH---HHHHHHHHhhcCCEEEE
Q 048013          168 GIDVSFDCAGFNK---TMSTALSATRAGGKVCL  197 (216)
Q Consensus       168 ~~d~vi~~~g~~~---~~~~~~~~l~~~G~~v~  197 (216)
                      .+|++|-++....   .+++..+.+.++..++.
T Consensus        72 ~aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          72 DADVILIVVPAIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             TCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             CCCEEEEEEchhHHHHHHHHhhhccCCCCEEEE
Confidence            6899999988732   22333344445555443

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.81  E-value=6.3e-05  Score=52.61  Aligned_cols=44  Identities=18%  Similarity=0.091  Sum_probs=38.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGAD  142 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~  142 (216)
                      +|.|+|+|.+|...++.++..|.+ |++.|+++++.+.+++.+..
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~-V~~~d~~~~~~~~a~~~~~~   45 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHY-LIGVSRQQSTCEKAVERQLV   45 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHTTSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCE-EEEEECCchHHHHHHHhhcc
Confidence            588999999999999999999985 99999999999998888753

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.80  E-value=7.1e-05  Score=57.27  Aligned_cols=100  Identities=18%  Similarity=0.195  Sum_probs=68.9

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      +++.++++|++||-+|+|- |..++.+++..|+ .|++++.+++..+.+++    .|...-+.+.  ..++    .+   
T Consensus        55 ~~~l~l~~G~~VLDiGCG~-G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~--~~d~----~~---  123 (285)
T d1kpga_          55 LGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVL--LAGW----EQ---  123 (285)
T ss_dssp             HTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEE--ESCG----GG---
T ss_pred             HHHcCCCCCCEEEEecCcc-hHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHH--Hhhh----hc---
Confidence            4678899999999999874 6678888999999 49999999988776644    3332211111  1121    11   


Q ss_pred             HcCCCccEEEE-----cCCC---HHHHHHHHHHhhcCCEEEEec
Q 048013          164 AMGTGIDVSFD-----CAGF---NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       164 ~~~~~~d~vi~-----~~g~---~~~~~~~~~~l~~~G~~v~~g  199 (216)
                       ....+|.++.     .++.   ...++.+.+.|+|+|++++--
T Consensus       124 -~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         124 -FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT  166 (285)
T ss_dssp             -CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             -ccccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence             2457888765     3332   356788999999999998644

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.80  E-value=3.3e-05  Score=57.91  Aligned_cols=83  Identities=16%  Similarity=0.213  Sum_probs=56.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCC-eEEEEcCChHHHHHHHHcCCCE--EEeCCC-CcccHHHHHHHHHHHc-CCCc
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAP-RIVIVDVDDYRLSVAKKLGADN--IVKVST-NLQDIAEEVEKIQKAM-GTGI  169 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~-~vv~~~~~~~~~~~~~~~g~~~--~~~~~~-~~~~~~~~~~~~~~~~-~~~~  169 (216)
                      .++|||+|+ +++|.++++.+...|+. +|+...+++++.+.+++.....  .+..|- +.++..+.+.++.+.. ..++
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~i   82 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGL   82 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCCe
Confidence            478999996 89999999888888864 5888889998888776654332  222222 2233444444444333 3469


Q ss_pred             cEEEEcCCC
Q 048013          170 DVSFDCAGF  178 (216)
Q Consensus       170 d~vi~~~g~  178 (216)
                      |++++++|.
T Consensus        83 dilinnAG~   91 (250)
T d1yo6a1          83 SLLINNAGV   91 (250)
T ss_dssp             CEEEECCCC
T ss_pred             EEEEEcCcc
Confidence            999999984

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.80  E-value=3.8e-05  Score=58.70  Aligned_cols=100  Identities=14%  Similarity=0.245  Sum_probs=67.7

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ++..++++|++||-+|+|. |..+..+++..|+ .|++++.+++..+.+++    .+....+....  .+.    .    
T Consensus        45 ~~~l~l~~g~~VLDiGCG~-G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~--~d~----~----  112 (280)
T d2fk8a1          45 LDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLL--QGW----E----  112 (280)
T ss_dssp             HTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE--SCG----G----
T ss_pred             HHHcCCCCCCEEEEecCCc-hHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhh--hhh----h----
Confidence            4667899999999999874 4456778888898 59999999988776644    34432111101  111    1    


Q ss_pred             HcCCCccEEEE-----cCCC---HHHHHHHHHHhhcCCEEEEec
Q 048013          164 AMGTGIDVSFD-----CAGF---NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       164 ~~~~~~d~vi~-----~~g~---~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      .....||.|+.     .++.   +..++.+.+.|+|+|++++-.
T Consensus       113 ~~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         113 DFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             GCCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hhccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence            12457888864     3332   356788999999999998643

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.78  E-value=0.00014  Score=55.67  Aligned_cols=83  Identities=13%  Similarity=0.108  Sum_probs=55.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-----HHcCCCE-EEeCCCCcc-cHHHHHHHHHHHc
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-----KKLGADN-IVKVSTNLQ-DIAEEVEKIQKAM  165 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-----~~~g~~~-~~~~~~~~~-~~~~~~~~~~~~~  165 (216)
                      -+|+++||+|+ +++|.++++.+...|++ |+.+++++++.+.+     ++.+... .+..+-.++ +..+.+.... ..
T Consensus        23 l~gK~alITGas~GIG~aiA~~la~~Ga~-Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~-~~  100 (294)
T d1w6ua_          23 FQGKVAFITGGGTGLGKGMTTLLSSLGAQ-CVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELI-KV  100 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHH-HH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhh-hh
Confidence            35799999995 89999999999999995 99999998775433     2334443 222222222 2333333333 23


Q ss_pred             CCCccEEEEcCCC
Q 048013          166 GTGIDVSFDCAGF  178 (216)
Q Consensus       166 ~~~~d~vi~~~g~  178 (216)
                      ..++|++++++|.
T Consensus       101 ~g~iDilvnnAg~  113 (294)
T d1w6ua_         101 AGHPNIVINNAAG  113 (294)
T ss_dssp             TCSCSEEEECCCC
T ss_pred             ccccchhhhhhhh
Confidence            4689999999985

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.77  E-value=0.00011  Score=55.45  Aligned_cols=104  Identities=20%  Similarity=0.224  Sum_probs=72.3

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChHHHHHHHH----c---CCCEEEeCCCCcccHHHHH
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAP-RIVIVDVDDYRLSVAKK----L---GADNIVKVSTNLQDIAEEV  158 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~-~vv~~~~~~~~~~~~~~----~---g~~~~~~~~~~~~~~~~~~  158 (216)
                      .+...+++||++||-.|+|. |.+++.+|+..|.. +|+.++.+++..+.+++    +   ..+++.....   |..+  
T Consensus        88 Ii~~l~i~PG~~VLE~G~Gs-G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~---d~~~--  161 (264)
T d1i9ga_          88 IVHEGDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS---DLAD--  161 (264)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS---CGGG--
T ss_pred             HHHHhCCCCCCEEEecCcCC-cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEec---cccc--
Confidence            34678899999999999875 88888999987753 79999999988877754    2   1233222111   1110  


Q ss_pred             HHHHHHcCCCccEEEEcCCC-HHHHHHHHHHhhcCCEEEEec
Q 048013          159 EKIQKAMGTGIDVSFDCAGF-NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~~l~~~G~~v~~g  199 (216)
                        . ......||.||-...+ ...+..+.+.|+|+|+++.+-
T Consensus       162 --~-~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~  200 (264)
T d1i9ga_         162 --S-ELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYV  200 (264)
T ss_dssp             --C-CCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             --c-cccCCCcceEEEecCCHHHHHHHHHhccCCCCEEEEEe
Confidence              0 0124569987765554 467788999999999998764

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.77  E-value=0.0002  Score=53.81  Aligned_cols=82  Identities=17%  Similarity=0.225  Sum_probs=56.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEE-EeCC-CCcccHHHHHHHHHHHcCC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNI-VKVS-TNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~-~~~~-~~~~~~~~~~~~~~~~~~~  167 (216)
                      +|+.+||+|+ +++|.++++.+...|++ |+++++++++++.+    ++.+.... +..| .+.++..+.+.++.+.. +
T Consensus         1 DgKValITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~-g   78 (257)
T d2rhca1           1 DSEVALVTGATSGIGLEIARRLGKEGLR-VFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERY-G   78 (257)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT-C
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHh-C
Confidence            4678899996 89999999999999995 99999998876543    34555432 2222 22334445555554433 4


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      ++|++++++|.
T Consensus        79 ~iDilVnnAG~   89 (257)
T d2rhca1          79 PVDVLVNNAGR   89 (257)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEecccc
Confidence            79999999985

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.76  E-value=4.9e-05  Score=56.42  Aligned_cols=100  Identities=20%  Similarity=0.286  Sum_probs=62.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEe-CCCCcccHHH-HHHHHHH-HcCCCccE
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVK-VSTNLQDIAE-EVEKIQK-AMGTGIDV  171 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~-~~~~~~~-~~~~~~d~  171 (216)
                      +.+|||+|+ +++|.++++.+...|++ |+.++++++..      ....... .+....+... ....... ....++|+
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~-V~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~   74 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYT-VLNIDLSANDQ------ADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDG   74 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCCTT------SSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCchhc------ccccceeccccCchhHHHHHHHHHHHHhcCCCeeE
Confidence            346899996 89999999999999995 99998886532      1111111 1111111111 1112211 23567999


Q ss_pred             EEEcCCCH--------------------------HHHHHHHHHhhcCCEEEEeccCC
Q 048013          172 SFDCAGFN--------------------------KTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       172 vi~~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +++++|..                          ...+.+++.|+++|+++.++...
T Consensus        75 linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~  131 (235)
T d1ooea_          75 VFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAA  131 (235)
T ss_dssp             EEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             EEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHH
Confidence            99998841                          12466777888899999998544

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=3.9e-05  Score=59.79  Aligned_cols=106  Identities=22%  Similarity=0.286  Sum_probs=68.1

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChHHHHHHHH----cC-----------CCEEEeCCCC
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAP-RIVIVDVDDYRLSVAKK----LG-----------ADNIVKVSTN  150 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~-~vv~~~~~~~~~~~~~~----~g-----------~~~~~~~~~~  150 (216)
                      .+...+++||++||-.|+|. |.+++.+|+..|.. +|+.++.+++..+.+++    ++           .+.+.....+
T Consensus        90 Il~~l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~d  168 (324)
T d2b25a1          90 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD  168 (324)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred             HHHHhCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecc
Confidence            34667899999999999876 88888999987754 79999999988777643    11           1122111111


Q ss_pred             cccHHHHHHHHHHHcCCCccEEEEcCCC-HHHHHHHHHHhhcCCEEEEec
Q 048013          151 LQDIAEEVEKIQKAMGTGIDVSFDCAGF-NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      -.++.   ..+   ....+|.||--... ...+..+.+.|+|+|+++.+-
T Consensus       169 i~~~~---~~~---~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~  212 (324)
T d2b25a1         169 ISGAT---EDI---KSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV  212 (324)
T ss_dssp             TTCCC-------------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred             hhhcc---ccc---CCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEe
Confidence            11111   111   13358887643443 357789999999999998764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.73  E-value=6e-05  Score=54.16  Aligned_cols=77  Identities=13%  Similarity=0.240  Sum_probs=53.4

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-c----CCC-EEEeCCCCcccHHHHHHHHHHH
Q 048013           92 NIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-L----GAD-NIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        92 ~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~----g~~-~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      .--++++++|+|+ |++|..+++.+...|++ |+.++++.++.+.+.+ +    ... ...+..    + .+.+++.   
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~----~-~~~~~~~---   89 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGRKLDKAQAAADSVNKRFKVNVTAAETA----D-DASRAEA---   89 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHHHTCCCEEEECC----S-HHHHHHH---
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhccc-hhhcccchHHHHHHHHHHHhccchhhhhhhcc----c-HHHHHHH---
Confidence            3568999999996 99999999999999994 9999999988765422 2    222 222221    1 1223332   


Q ss_pred             cCCCccEEEEcCCC
Q 048013          165 MGTGIDVSFDCAGF  178 (216)
Q Consensus       165 ~~~~~d~vi~~~g~  178 (216)
                       -+++|++|+++|.
T Consensus        90 -~~~iDilin~Ag~  102 (191)
T d1luaa1          90 -VKGAHFVFTAGAI  102 (191)
T ss_dssp             -TTTCSEEEECCCT
T ss_pred             -hcCcCeeeecCcc
Confidence             2479999999874

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.72  E-value=0.00044  Score=51.30  Aligned_cols=105  Identities=16%  Similarity=0.179  Sum_probs=69.1

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCC------eEEEEcCChHHHHHH----HHcCCCEE-EeCC-CCcccHHHHHHHHHHH
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAP------RIVIVDVDDYRLSVA----KKLGADNI-VKVS-TNLQDIAEEVEKIQKA  164 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~------~vv~~~~~~~~~~~~----~~~g~~~~-~~~~-~~~~~~~~~~~~~~~~  164 (216)
                      .+||+|+ +++|.++++.+...|++      .++..++++++++.+    ++.|.... +..| ++.++..+.++++.+.
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER   82 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            3678896 89999999988888985      378889998876654    22444322 2222 2233444455555443


Q ss_pred             cCCCccEEEEcCCCH-------------------------HHHHHHHHHhh--cCCEEEEeccCCC
Q 048013          165 MGTGIDVSFDCAGFN-------------------------KTMSTALSATR--AGGKVCLVGMGHR  203 (216)
Q Consensus       165 ~~~~~d~vi~~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~~~  203 (216)
                      . +++|+++++.|..                         ...+.+++.|+  .+|+++.++....
T Consensus        83 ~-g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~  147 (240)
T d2bd0a1          83 Y-GHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAA  147 (240)
T ss_dssp             T-SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             c-CCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhh
Confidence            3 4799999999852                         13467777774  4689999875444

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=97.71  E-value=0.00048  Score=51.26  Aligned_cols=104  Identities=16%  Similarity=0.202  Sum_probs=66.9

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChHHHHHH----HHcCCCEE-EeCC-CCcccHHHHHHHHHHHcCCC
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIV-DVDDYRLSVA----KKLGADNI-VKVS-TNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~-~~~~~~~~~~----~~~g~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~  168 (216)
                      ..+||+|+ +++|.++++.+...|++ |+.. .++++..+.+    ++.+.... +..| .+.++..+.++++.+.. ++
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~-V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~   79 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCK-VLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAW-GT   79 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHS-SC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHc-CC
Confidence            35788886 89999999999999996 6665 4565554433    44554432 2222 22234444555554443 47


Q ss_pred             ccEEEEcCCCH-------------------------HHHHHHHHHh--hcCCEEEEeccCC
Q 048013          169 IDVSFDCAGFN-------------------------KTMSTALSAT--RAGGKVCLVGMGH  202 (216)
Q Consensus       169 ~d~vi~~~g~~-------------------------~~~~~~~~~l--~~~G~~v~~g~~~  202 (216)
                      +|++++++|..                         ...+.+++.|  +.+|+++.++...
T Consensus        80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~  140 (244)
T d1edoa_          80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVV  140 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTH
T ss_pred             CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChh
Confidence            99999999852                         1346777777  4578999998543

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=97.71  E-value=7.1e-05  Score=55.35  Aligned_cols=92  Identities=21%  Similarity=0.308  Sum_probs=66.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      ..++.+||-+|+|. |..+..+++ .|+ .|+++|.+++.++.+++.+....+..+.  ++       +. .....||+|
T Consensus        40 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~~--~~-------l~-~~~~~fD~i  106 (246)
T d2avna1          40 LKNPCRVLDLGGGT-GKWSLFLQE-RGF-EVVLVDPSKEMLEVAREKGVKNVVEAKA--ED-------LP-FPSGAFEAV  106 (246)
T ss_dssp             CCSCCEEEEETCTT-CHHHHHHHT-TTC-EEEEEESCHHHHHHHHHHTCSCEEECCT--TS-------CC-SCTTCEEEE
T ss_pred             cCCCCEEEEECCCC-chhcccccc-cce-EEEEeecccccccccccccccccccccc--cc-------cc-cccccccce
Confidence            56788999999984 888887776 588 4999999999999998876665544221  11       10 124579998


Q ss_pred             EEcCC------C-HHHHHHHHHHhhcCCEEEE
Q 048013          173 FDCAG------F-NKTMSTALSATRAGGKVCL  197 (216)
Q Consensus       173 i~~~g------~-~~~~~~~~~~l~~~G~~v~  197 (216)
                      +....      + ...++.+.+.|+|||.+++
T Consensus       107 i~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii  138 (246)
T d2avna1         107 LALGDVLSYVENKDKAFSEIRRVLVPDGLLIA  138 (246)
T ss_dssp             EECSSHHHHCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             eeecchhhhhhhHHHHHHHHHhhcCcCcEEEE
Confidence            86543      2 2456788899999998875

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=97.67  E-value=7.6e-05  Score=54.84  Aligned_cols=102  Identities=21%  Similarity=0.237  Sum_probs=68.3

Q ss_pred             HHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----HcCCCEEEeCCCCcccHHHHHHHHH
Q 048013           87 ACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KLGADNIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        87 ~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~  162 (216)
                      .++..+++++++||-+|+|. |..+..+++ .|. .++++|.+++-.+.++    +.+...+..+..+.++       + 
T Consensus         7 ll~~~~l~~~~rVLDiGcG~-G~~~~~l~~-~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~-------l-   75 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVATGG-GHVANAFAP-FVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ-------M-   75 (231)
T ss_dssp             HHHHHTCCSCCEEEEETCTT-CHHHHHHGG-GSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C-------C-
T ss_pred             HHHhcCCCCcCEEEEecccC-cHHHHHHHH-hCC-EEEEEECCHHHHhhhhhccccccccccccccccccc-------c-
Confidence            45778899999999999873 767777765 466 5999999988766654    3454433221111111       1 


Q ss_pred             HHcCCCccEEEEcCC-----C-HHHHHHHHHHhhcCCEEEEec
Q 048013          163 KAMGTGIDVSFDCAG-----F-NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g-----~-~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ......||+|+..-.     + ...+..+.+.|+|+|++++.-
T Consensus        76 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          76 PFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            012456999986533     2 356789999999999999764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.67  E-value=0.00054  Score=45.85  Aligned_cols=75  Identities=20%  Similarity=0.213  Sum_probs=54.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      +|+|.|+|.+|..+++.+...|.. |++++.++++.+.+.+ ++...+. -+..+.+   .+++.   .-...|.++-++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~-v~vid~d~~~~~~~~~~~~~~vi~-Gd~~~~~---~l~~~---~i~~a~~vv~~t   73 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHD-IVLIDIDKDICKKASAEIDALVIN-GDCTKIK---TLEDA---GIEDADMYIAVT   73 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHCSSEEEE-SCTTSHH---HHHHT---TTTTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCC-cceecCChhhhhhhhhhhhhhhcc-Ccccchh---hhhhc---ChhhhhhhcccC
Confidence            588999999999999999999985 9999999999887754 6655433 2222222   23322   335789999999


Q ss_pred             CCHH
Q 048013          177 GFNK  180 (216)
Q Consensus       177 g~~~  180 (216)
                      .+.+
T Consensus        74 ~~d~   77 (132)
T d1lssa_          74 GKEE   77 (132)
T ss_dssp             SCHH
T ss_pred             CcHH
Confidence            9843

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=0.00022  Score=50.06  Aligned_cols=80  Identities=18%  Similarity=0.275  Sum_probs=55.0

Q ss_pred             HHHHHcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCC-EEEeCCCCcccHHHHHHHHH
Q 048013           86 HACRRAN-IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGAD-NIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        86 ~~l~~~~-~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~~~~~~~  162 (216)
                      ++++..+ ..++++|+|+|+|+.+.+++..+..+|++ +.++.|+.++.+.+ +.+... .+......  +         
T Consensus         7 ~~l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~~-i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~--~---------   74 (170)
T d1nyta1           7 SDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCA-VTITNRTVSRAEELAKLFAHTGSIQALSMD--E---------   74 (170)
T ss_dssp             HHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSHHHHHHHHHHTGGGSSEEECCSG--G---------
T ss_pred             HHHHHcCCCCCCCEEEEECCcHHHHHHHHHhcccceE-EEeccchHHHHHHHHHHHhhcccccccccc--c---------
Confidence            4564444 46789999999999999999999999995 99999998886654 444322 11111110  0         


Q ss_pred             HHcCCCccEEEEcCCC
Q 048013          163 KAMGTGIDVSFDCAGF  178 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~  178 (216)
                       .....+|++|+|+..
T Consensus        75 -~~~~~~dliIN~Tp~   89 (170)
T d1nyta1          75 -LEGHEFDLIINATSS   89 (170)
T ss_dssp             -GTTCCCSEEEECCSC
T ss_pred             -ccccccceeeccccc
Confidence             123468999999875

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.63  E-value=0.00015  Score=54.56  Aligned_cols=82  Identities=18%  Similarity=0.274  Sum_probs=56.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-----HHcCCCEE-EeCC-CCcccHHHHHHHHHHHcC
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-----KKLGADNI-VKVS-TNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-----~~~g~~~~-~~~~-~~~~~~~~~~~~~~~~~~  166 (216)
                      +|+++||+|+ +++|.++++.+...|++ |+++++++++...+     ++.|.... +..| .+.++..+.++++.+.. 
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~-   85 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGAN-VAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADL-   85 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHS-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHh-
Confidence            5789999996 89999999999999995 99999987665332     34565432 2222 22334444555554433 


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      +++|++++++|.
T Consensus        86 g~iDilVnnAg~   97 (260)
T d1h5qa_          86 GPISGLIANAGV   97 (260)
T ss_dssp             CSEEEEEECCCC
T ss_pred             CCCcEecccccc
Confidence            479999999884

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.00063  Score=52.87  Aligned_cols=108  Identities=15%  Similarity=0.135  Sum_probs=68.2

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-----------cCC--CEEEeCCCCc
Q 048013           85 VHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-----------LGA--DNIVKVSTNL  151 (216)
Q Consensus        85 ~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-----------~g~--~~~~~~~~~~  151 (216)
                      .+.++..+++++++|+-+|+|. |..++++|+..++..+++++.+++..+.+++           +|.  ..+.....+.
T Consensus       141 ~~~~~~~~l~~~~~vlD~GcG~-G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~  219 (328)
T d1nw3a_         141 AQMIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF  219 (328)
T ss_dssp             HHHHHHSCCCTTCEEEEETCTT-SHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred             HHHHHHcCCCCCCEEEEcCCCC-CHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence            3456778899999999999875 8888899999998789999999876655532           122  1221111111


Q ss_pred             ccHHHHHHHHHHHcCCCccEEEEcCC--CH---HHHHHHHHHhhcCCEEEEec
Q 048013          152 QDIAEEVEKIQKAMGTGIDVSFDCAG--FN---KTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~d~vi~~~g--~~---~~~~~~~~~l~~~G~~v~~g  199 (216)
                      .+.  ...+..    ..+|+|+...-  .+   ..+...++.|+|||+++..-
T Consensus       220 ~~~--~~~~~~----~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         220 LSE--EWRERI----ANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             TSH--HHHHHH----HHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ccc--cccccc----CcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence            111  111110    13678775322  22   34567778899999998653

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.62  E-value=0.00021  Score=47.94  Aligned_cols=94  Identities=11%  Similarity=0.171  Sum_probs=63.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      ++++|+|+|.+|..+++.+...|.. |++++.++++.+.++..+...++. +..+++.   +.+.   .-..+|.+|-++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~-vvvid~d~~~~~~~~~~~~~~~~g-d~~~~~~---l~~a---~i~~a~~vi~~~   72 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHE-VLAVDINEEKVNAYASYATHAVIA-NATEENE---LLSL---GIRNFEYVIVAI   72 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC-CEEEESCHHHHHHTTTTCSEEEEC-CTTCTTH---HHHH---TGGGCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCe-EEEecCcHHHHHHHHHhCCcceee-ecccchh---hhcc---CCccccEEEEEc
Confidence            3578889999999999999999996 999999999999888777654442 3333332   2222   224589999888


Q ss_pred             CCHHHH-H--HHHHHhhcCCEEEEe
Q 048013          177 GFNKTM-S--TALSATRAGGKVCLV  198 (216)
Q Consensus       177 g~~~~~-~--~~~~~l~~~G~~v~~  198 (216)
                      ++.+.. .  .....+.+..+++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~iiar   97 (134)
T d2hmva1          73 GANIQASTLTTLLLKELDIPNIWVK   97 (134)
T ss_dssp             CSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CchHHhHHHHHHHHHHcCCCcEEee
Confidence            863322 2  222233455566544

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=97.62  E-value=9.2e-05  Score=54.69  Aligned_cols=99  Identities=18%  Similarity=0.196  Sum_probs=66.8

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      +...++++++||-+|+|. |..+..+++. +. +|+++|.++.-++.+++    .+...+..+..+.+++        ..
T Consensus        10 ~~~~~~~~~rILDiGcGt-G~~~~~la~~-~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~--------~~   78 (234)
T d1xxla_          10 KTAECRAEHRVLDIGAGA-GHTALAFSPY-VQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL--------PF   78 (234)
T ss_dssp             HHHTCCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC--------CS
T ss_pred             HHhCCCCCCEEEEeCCcC-cHHHHHHHHh-CC-eEEEEeCChhhhhhhhhhhcccccccccccccccccc--------cc
Confidence            667899999999999875 7777777774 55 59999999887665533    3444332211111111        01


Q ss_pred             cCCCccEEEEcCC-----C-HHHHHHHHHHhhcCCEEEEe
Q 048013          165 MGTGIDVSFDCAG-----F-NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       165 ~~~~~d~vi~~~g-----~-~~~~~~~~~~l~~~G~~v~~  198 (216)
                      ....||+|+..-.     + ...++.+.+.|+|+|++++.
T Consensus        79 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~  118 (234)
T d1xxla_          79 PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLV  118 (234)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEE
Confidence            2356999887433     2 35678999999999998875

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.62  E-value=1.8e-05  Score=58.53  Aligned_cols=105  Identities=22%  Similarity=0.268  Sum_probs=66.0

Q ss_pred             HHHHHc--CCCCCCEEEEEcCCHHHHHHHHHHHH---cCC---CeEEEEcCChHHHHHHHH---------cCCCEEEeCC
Q 048013           86 HACRRA--NIGPETNVLIMGSGPIGLVTMLAARA---FGA---PRIVIVDVDDYRLSVAKK---------LGADNIVKVS  148 (216)
Q Consensus        86 ~~l~~~--~~~~~~~vlv~Gag~~G~~~i~~a~~---~g~---~~vv~~~~~~~~~~~~~~---------~g~~~~~~~~  148 (216)
                      .+++..  .++++++||.+|+|. |..++.+++.   .|.   .+|+.++.+++-.+.+++         ++...+....
T Consensus        69 ~~l~~L~~~l~~g~~VLeIGtGs-GY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~  147 (223)
T d1r18a_          69 FALEYLRDHLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  147 (223)
T ss_dssp             HHHHHTTTTCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHhhccCCCCeEEEecCCC-CHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence            445543  689999999999753 5555555544   443   259999999876665532         2333332211


Q ss_pred             CCcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEE-ec
Q 048013          149 TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCL-VG  199 (216)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~-~g  199 (216)
                      .   |..+   .+  ....+||.|+-+.+.+...+..++.|+++|+++. +|
T Consensus       148 ~---d~~~---~~--~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         148 G---DGRK---GY--PPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVG  191 (223)
T ss_dssp             S---CGGG---CC--GGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEES
T ss_pred             c---cccc---cc--ccccceeeEEEEeechhchHHHHHhcCCCcEEEEEEe
Confidence            1   1100   00  1245799999888765666788899999999986 45

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=8.3e-05  Score=53.82  Aligned_cols=96  Identities=25%  Similarity=0.303  Sum_probs=62.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      -++|+|+|+ |.+|..++..+...|.+ |++++|+.++.......+.. ++.-+-  .+.. .+.+..    .++|+||.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~-V~~~~R~~~~~~~~~~~~~~-~~~gD~--~d~~-~l~~al----~~~d~vi~   73 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYE-VTVLVRDSSRLPSEGPRPAH-VVVGDV--LQAA-DVDKTV----AGQDAVIV   73 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCGGGSCSSSCCCSE-EEESCT--TSHH-HHHHHH----TTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCE-EEEEEcChhhcccccccccc-cccccc--cchh-hHHHHh----cCCCEEEE
Confidence            368999996 99999999988889985 99999998875443333333 333222  2222 233321    36899999


Q ss_pred             cCCCH----------HHHHHHHHHhhcCC--EEEEecc
Q 048013          175 CAGFN----------KTMSTALSATRAGG--KVCLVGM  200 (216)
Q Consensus       175 ~~g~~----------~~~~~~~~~l~~~G--~~v~~g~  200 (216)
                      ++|..          ......++.++..|  +++.++.
T Consensus        74 ~~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss  111 (205)
T d1hdoa_          74 LLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTS  111 (205)
T ss_dssp             CCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             EeccCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEee
Confidence            99852          22345666666554  7787753

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.60  E-value=0.00011  Score=52.43  Aligned_cols=101  Identities=19%  Similarity=0.264  Sum_probs=67.7

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----HcCCC-EEEeCCCCcccHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KLGAD-NIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~g~~-~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ...+++++++||-+|+|. |..++.+++. +. +|+++|.+++..+.++    ++|.. .+..+.   .+..+..     
T Consensus        27 ~~l~~~~g~~VLDiGcGs-G~~s~~lA~~-~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~---gda~~~~-----   95 (186)
T d1l3ia_          27 CLAEPGKNDVAVDVGCGT-GGVTLELAGR-VR-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLME---GDAPEAL-----   95 (186)
T ss_dssp             HHHCCCTTCEEEEESCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE---SCHHHHH-----
T ss_pred             HhcCCCCCCEEEEEECCe-Eccccccccc-ce-EEEEecCCHHHHHHHHHHHHHcCCCcceEEEE---Cchhhcc-----
Confidence            556889999999999864 5566666664 44 6999999998777664    46653 332211   2332222     


Q ss_pred             HcCCCccEEEEcCCC---HHHHHHHHHHhhcCCEEEEecc
Q 048013          164 AMGTGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      .....+|.++..-..   .+.++.+.+.|+|+|++++...
T Consensus        96 ~~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~  135 (186)
T d1l3ia_          96 CKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI  135 (186)
T ss_dssp             TTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cccCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEee
Confidence            124579998875543   3567888899999999987653

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.59  E-value=0.0003  Score=48.89  Aligned_cols=44  Identities=20%  Similarity=0.226  Sum_probs=38.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGAD  142 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~  142 (216)
                      +|-++|.|.||...++-+...|++ |++.++++++.+.+.+.+..
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~-V~~~d~~~~~~~~~~~~~~~   45 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYS-LVVSDRNPEAIADVIAAGAE   45 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHTTCE
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCe-EEEEeCCcchhHHHHHhhhh
Confidence            578899999999999988889995 99999999999888877664

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00034  Score=53.69  Aligned_cols=84  Identities=20%  Similarity=0.273  Sum_probs=56.9

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHc--------CCCEE-EeCC-CCcccHHHHHHH
Q 048013           93 IGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKL--------GADNI-VKVS-TNLQDIAEEVEK  160 (216)
Q Consensus        93 ~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~--------g~~~~-~~~~-~~~~~~~~~~~~  160 (216)
                      .-+|+++||+|+ +++|.++++.+...|++ |+++++++++.+.+ +++        +.... +..| .+.++..+.+++
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~-Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~   87 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSN-VVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS   87 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence            347899999996 89999999999999995 99999998876543 222        22221 1112 223344445555


Q ss_pred             HHHHcCCCccEEEEcCCC
Q 048013          161 IQKAMGTGIDVSFDCAGF  178 (216)
Q Consensus       161 ~~~~~~~~~d~vi~~~g~  178 (216)
                      +.+..+ ++|++++++|.
T Consensus        88 ~~~~~G-~iDiLVnnAg~  104 (297)
T d1yxma1          88 TLDTFG-KINFLVNNGGG  104 (297)
T ss_dssp             HHHHHS-CCCEEEECCCC
T ss_pred             HHHHhC-CeEEEEeeccc
Confidence            544344 79999999885

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=0.00025  Score=50.38  Aligned_cols=109  Identities=12%  Similarity=0.138  Sum_probs=66.0

Q ss_pred             HHHHHcCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHc----CCCE-EEeCCCCcccHH
Q 048013           86 HACRRANI-GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKL----GADN-IVKVSTNLQDIA  155 (216)
Q Consensus        86 ~~l~~~~~-~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~----g~~~-~~~~~~~~~~~~  155 (216)
                      ++++..+. -.+++|+|+|+|+++.+++..+...|++.++++.|+.++.+.+    +++    .... ....    .+..
T Consensus         7 ~~l~~~~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~   82 (182)
T d1vi2a1           7 RAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDL----ADQQ   82 (182)
T ss_dssp             HHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEET----TCHH
T ss_pred             HHHHHcCCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeec----cccc
Confidence            45544443 4678999999999999999999999998899999987654432    222    2211 1221    1222


Q ss_pred             HHHHHHHHHcCCCccEEEEcCCCH------HHHHHHHHHhhcCCEEEEeccCCC
Q 048013          156 EEVEKIQKAMGTGIDVSFDCAGFN------KTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       156 ~~~~~~~~~~~~~~d~vi~~~g~~------~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      +....+     ..+|++|++++..      +.+..-+..++++..++.+-..+.
T Consensus        83 ~~~~~~-----~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~p~  131 (182)
T d1vi2a1          83 AFAEAL-----ASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPH  131 (182)
T ss_dssp             HHHHHH-----HTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCSSS
T ss_pred             chhhhh-----cccceeccccCCccccccchhhhhHHHhhhcchhhHHhhcCcc
Confidence            212222     2689999998741      000111345677778887765433

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=0.00035  Score=52.17  Aligned_cols=83  Identities=17%  Similarity=0.198  Sum_probs=53.3

Q ss_pred             CCCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCC-CcccHHHHHHHHHHHc
Q 048013           94 GPETNVLIMGS-G--PIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        94 ~~~~~vlv~Ga-g--~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      -+|+++||+|+ |  ++|.+++..+...|++ |+..+++++..+.+++    .+.......+. +..+..+...++. ..
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~-V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   80 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELG-KV   80 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH-TT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhh-hc
Confidence            47899999986 5  6889999999999995 8888888765544433    34444333222 2222333333332 23


Q ss_pred             CCCccEEEEcCCC
Q 048013          166 GTGIDVSFDCAGF  178 (216)
Q Consensus       166 ~~~~d~vi~~~g~  178 (216)
                      ....|+.+++++.
T Consensus        81 ~~~~d~~v~~a~~   93 (258)
T d1qsga_          81 WPKFDGFVHSIGF   93 (258)
T ss_dssp             CSSEEEEEECCCC
T ss_pred             ccccceEEEeecc
Confidence            4578999988764

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=0.00071  Score=54.01  Aligned_cols=109  Identities=17%  Similarity=0.152  Sum_probs=70.6

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc-----------CCC---EEEeCCC
Q 048013           84 GVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL-----------GAD---NIVKVST  149 (216)
Q Consensus        84 a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~-----------g~~---~~~~~~~  149 (216)
                      ...+++..+++++++++-+|+|. |..++++|+..|+.++++++.++...+.+++.           +..   ..+....
T Consensus       205 i~~Il~~l~Lkpgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~  283 (406)
T d1u2za_         205 LSDVYQQCQLKKGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  283 (406)
T ss_dssp             HHHHHHHTTCCTTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHHHHhCCCCCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence            45677888999999999999985 88999999999987799999998776665431           111   1111111


Q ss_pred             CcccHHHHHHHHHHHcCCCccEEEEcCC--C---HHHHHHHHHHhhcCCEEEEe
Q 048013          150 NLQDIAEEVEKIQKAMGTGIDVSFDCAG--F---NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~d~vi~~~g--~---~~~~~~~~~~l~~~G~~v~~  198 (216)
                      ...+ .+.....    -..+|+++-...  .   ...+...++.|+|||+++..
T Consensus       284 ~f~~-~~~~d~~----~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         284 SFVD-NNRVAEL----IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             CSTT-CHHHHHH----GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             chhh-ccccccc----cccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence            1111 0111111    124778775321  2   24567788899999999875

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.50  E-value=0.00032  Score=49.71  Aligned_cols=104  Identities=12%  Similarity=0.024  Sum_probs=65.5

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc-CCCEEE---------eCCC---CcccHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL-GADNIV---------KVST---NLQDIA  155 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~-g~~~~~---------~~~~---~~~~~~  155 (216)
                      ....+.++.+||.+|+|. |..++.+|+ .|++ |+++|.+++-++.+++. +.....         ....   ...++.
T Consensus        14 ~~l~~~~~~rvLd~GCG~-G~~a~~la~-~G~~-V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   90 (201)
T d1pjza_          14 SSLNVVPGARVLVPLCGK-SQDMSWLSG-QGYH-VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF   90 (201)
T ss_dssp             HHHCCCTTCEEEETTTCC-SHHHHHHHH-HCCE-EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred             HHcCCCCCCEEEEecCcC-CHHHHHHHH-cCCc-eEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccc
Confidence            345688999999999975 778888887 4885 99999999998888663 211100         0000   000110


Q ss_pred             HHHHHHHHHcCCCccEEEEcCCC--------HHHHHHHHHHhhcCCEEEEec
Q 048013          156 EEVEKIQKAMGTGIDVSFDCAGF--------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       156 ~~~~~~~~~~~~~~d~vi~~~g~--------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      +.-.    .....+|+|++...-        ...++.+.+.|+|+|++++..
T Consensus        91 ~l~~----~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          91 ALTA----RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             SSTH----HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             cccc----ccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence            0000    012358998885442        245678889999999877654

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=2.1e-05  Score=58.35  Aligned_cols=99  Identities=13%  Similarity=0.104  Sum_probs=63.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCC---CEEEeCCCCcccHHHHHHHHHHHcCCCc
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGA---DNIVKVSTNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      ..+|.+||-+|+|. |..+..+++..+. .+++++.+++.++.+++...   ..+..+   ..++......   .....|
T Consensus        51 ~~~g~~VLdIGcG~-G~~a~~~a~~~~~-~v~~id~s~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~f  122 (229)
T d1zx0a1          51 SSKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPL---KGLWEDVAPT---LPDGHF  122 (229)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEE---ESCHHHHGGG---SCTTCE
T ss_pred             ccCCCeEEEeeccc-hHHHHHHHHcCCC-eEEEeCCCHHHHHHHHHHhhhcccccccc---cccccccccc---cccccc
Confidence            46788999999875 6777777776555 59999999998888865322   122111   1122221111   134578


Q ss_pred             cEEE-EcCCC----------HHHHHHHHHHhhcCCEEEEec
Q 048013          170 DVSF-DCAGF----------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       170 d~vi-~~~g~----------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      |.++ |.+..          ...++.+.+.|+|||+++...
T Consensus       123 D~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         123 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  163 (229)
T ss_dssp             EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             cceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence            8874 54432          135577889999999998643

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00025  Score=49.28  Aligned_cols=101  Identities=18%  Similarity=0.308  Sum_probs=72.3

Q ss_pred             HHHH-HHcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHH
Q 048013           85 VHAC-RRAN-IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        85 ~~~l-~~~~-~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  162 (216)
                      +.++ +..+ .-.|++++|+|-|-+|..+++.++.+|+ +|++++.++-+.-++.--|. .+..           +.+. 
T Consensus        11 ~~~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp~~al~A~~dG~-~v~~-----------~~~a-   76 (163)
T d1li4a1          11 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDPINALQAAMEGY-EVTT-----------MDEA-   76 (163)
T ss_dssp             HHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTC-EECC-----------HHHH-
T ss_pred             HHHHHHHhCceecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecccchhHHhhcCce-Eeee-----------hhhh-
Confidence            4444 3333 5689999999999999999999999999 59999998755333332233 3221           1221 


Q ss_pred             HHcCCCccEEEEcCCCHHH-HHHHHHHhhcCCEEEEeccCC
Q 048013          163 KAMGTGIDVSFDCAGFNKT-MSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~~~~-~~~~~~~l~~~G~~v~~g~~~  202 (216)
                         -...|+++-++|+.+. -.+-++.|+++..+..+|.-.
T Consensus        77 ---~~~adivvtaTGn~~vI~~eh~~~MKdgaIL~N~Ghfd  114 (163)
T d1li4a1          77 ---CQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFD  114 (163)
T ss_dssp             ---TTTCSEEEECSSCSCSBCHHHHTTCCTTEEEEECSSST
T ss_pred             ---hhhccEEEecCCCccchhHHHHHhccCCeEEEEecccc
Confidence               2357999999998543 367889999999999888433

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.45  E-value=0.00036  Score=51.93  Aligned_cols=81  Identities=19%  Similarity=0.265  Sum_probs=51.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHH---cCCCeEEEEcCChHHHHHHHH---cCCC-EEEeCCC-CcccHHHHHHHHHHH-cC
Q 048013           97 TNVLIMGS-GPIGLVTMLAARA---FGAPRIVIVDVDDYRLSVAKK---LGAD-NIVKVST-NLQDIAEEVEKIQKA-MG  166 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~---~g~~~vv~~~~~~~~~~~~~~---~g~~-~~~~~~~-~~~~~~~~~~~~~~~-~~  166 (216)
                      ++|||+|+ +++|.++++.+..   .|+ +|+..++++++.+.+++   .+.. ..+..|- +.++..+.+.++.+. ..
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~   81 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKD   81 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhc
Confidence            68999996 8999998876653   477 58999999877655433   2222 2233322 233444444544322 34


Q ss_pred             CCccEEEEcCCC
Q 048013          167 TGIDVSFDCAGF  178 (216)
Q Consensus       167 ~~~d~vi~~~g~  178 (216)
                      .++|+++++.|.
T Consensus        82 ~~iDiLvnNAg~   93 (248)
T d1snya_          82 QGLNVLFNNAGI   93 (248)
T ss_dssp             GCCSEEEECCCC
T ss_pred             CCcceEEeeccc
Confidence            579999999874

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=97.43  E-value=0.00056  Score=51.79  Aligned_cols=101  Identities=15%  Similarity=0.196  Sum_probs=67.4

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCC-EEEeCCCCcccHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGAD-NIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ....++++.+||-+|+|. |..+..+++..|+ .|+++|.++...+.+++    .|.. .+.....+..+       +. 
T Consensus        61 ~~~~l~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~-------l~-  130 (282)
T d2o57a1          61 MTGVLQRQAKGLDLGAGY-GGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE-------IP-  130 (282)
T ss_dssp             HTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS-------CS-
T ss_pred             HhcCCCCCCEEEEeCCCC-cHHHhhhhccCCc-EEEEEeccchhhhhhhccccccccccccccccccccc-------cc-
Confidence            346789999999999874 6677788887888 59999999887666543    3443 12111111111       10 


Q ss_pred             HcCCCccEEEEcCC-----C-HHHHHHHHHHhhcCCEEEEec
Q 048013          164 AMGTGIDVSFDCAG-----F-NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       164 ~~~~~~d~vi~~~g-----~-~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      .....||+|+..-.     + ...++.+.+.|+|+|++++..
T Consensus       131 ~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         131 CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITD  172 (282)
T ss_dssp             SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEE
Confidence            12356999886322     2 356789999999999998765

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.42  E-value=0.00038  Score=51.29  Aligned_cols=103  Identities=17%  Similarity=0.159  Sum_probs=68.5

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChHHHHHHHHc----CCCEEEeCCCCcccHHHHHHHHH
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFGAP-RIVIVDVDDYRLSVAKKL----GADNIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~-~vv~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~  162 (216)
                      ++...++||++||-+|+|+ |..+..+++..|.. +|+++|.+++..+.+++.    +....+..+.....  . ..   
T Consensus        66 l~~l~i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~--~-~~---  138 (227)
T d1g8aa_          66 LKNFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPE--E-YR---  138 (227)
T ss_dssp             CCCCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGG--G-GT---
T ss_pred             ccccccCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcc--c-cc---
Confidence            3556789999999999875 77888888887643 799999999888776542    22222222221111  0 10   


Q ss_pred             HHcCCCccEEEEcCCCH----HHHHHHHHHhhcCCEEEEe
Q 048013          163 KAMGTGIDVSFDCAGFN----KTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~~----~~~~~~~~~l~~~G~~v~~  198 (216)
                       .....+|+++..+..+    ..+..+.+.|+|+|+++++
T Consensus       139 -~~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         139 -ALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             -TTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -ccccceEEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence             1124688888766532    3567788899999988865

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.37  E-value=0.00084  Score=46.03  Aligned_cols=82  Identities=20%  Similarity=0.227  Sum_probs=52.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH-HcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK-KLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      +|.++|+|.+|.+.++-+...|...+++.++++++.+.+. +++....-+.    +.            -...|++|=++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~----~~------------v~~~Div~lav   65 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATL----PE------------LHSDDVLILAV   65 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSC----CC------------CCTTSEEEECS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccc----cc------------ccccceEEEec
Confidence            5788999999999888655566457999999999887764 4665432211    10            12357777666


Q ss_pred             CCHHHHHHHHHHhhcCCEEE
Q 048013          177 GFNKTMSTALSATRAGGKVC  196 (216)
Q Consensus       177 g~~~~~~~~~~~l~~~G~~v  196 (216)
                      -. ..+...++-+++.+.++
T Consensus        66 kP-~~~~~v~~~l~~~~~~v   84 (152)
T d1yqga2          66 KP-QDMEAACKNIRTNGALV   84 (152)
T ss_dssp             CH-HHHHHHHTTCCCTTCEE
T ss_pred             CH-HHHHHhHHHHhhcccEE
Confidence            54 34455555555544443

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=97.35  E-value=0.00074  Score=50.80  Aligned_cols=83  Identities=12%  Similarity=0.146  Sum_probs=54.2

Q ss_pred             CCCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEEEeCCC-CcccHHHHHHHHHHHc
Q 048013           94 GPETNVLIMGS-G--PIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNIVKVST-NLQDIAEEVEKIQKAM  165 (216)
Q Consensus        94 ~~~~~vlv~Ga-g--~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~  165 (216)
                      -+|+++||+|+ |  ++|.++++.+...|++ |+.++++++..+.+    .+.+...+...+. .+.+..+.+.+..+. 
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~-V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-   80 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGAT-LAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKD-   80 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCE-EEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHH-
Confidence            46899999985 5  7999999999999995 89999886433333    2233333333222 223334444444433 


Q ss_pred             CCCccEEEEcCCC
Q 048013          166 GTGIDVSFDCAGF  178 (216)
Q Consensus       166 ~~~~d~vi~~~g~  178 (216)
                      -.++|+++.+.+.
T Consensus        81 ~g~id~lV~nag~   93 (274)
T d2pd4a1          81 LGSLDFIVHSVAF   93 (274)
T ss_dssp             TSCEEEEEECCCC
T ss_pred             cCCCCeEEeeccc
Confidence            3579999998885

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.34  E-value=0.00059  Score=52.97  Aligned_cols=103  Identities=21%  Similarity=0.212  Sum_probs=66.9

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCE-EEeCCCCcccHHHHHHHHHHHcC
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADN-IVKVSTNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      .++++++||-.++|. |..++.+++ .|+..|+.+|.+++.++.+++    .|... +..   ...|..+.+..+. ..+
T Consensus       142 ~~~~g~~VLDl~~g~-G~~si~~a~-~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~---~~~d~~~~~~~~~-~~~  215 (324)
T d2as0a2         142 WVQPGDRVLDVFTYT-GGFAIHAAI-AGADEVIGIDKSPRAIETAKENAKLNGVEDRMKF---IVGSAFEEMEKLQ-KKG  215 (324)
T ss_dssp             GCCTTCEEEETTCTT-THHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEE---EESCHHHHHHHHH-HTT
T ss_pred             hcCCCCeeecccCcc-cchhhhhhh-cCCcEEEeecCCHHHHHHHHHHHHHcCCCcccee---eechhhhhhHHHH-hcc
Confidence            367899999887643 444444554 477679999999998877644    56532 211   1234444444332 246


Q ss_pred             CCccEEEEcCCC---------------HHHHHHHHHHhhcCCEEEEecc
Q 048013          167 TGIDVSFDCAGF---------------NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       167 ~~~d~vi~~~g~---------------~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      ..||+|+-..+.               ...+..++++|+|+|.++.+.-
T Consensus       216 ~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~  264 (324)
T d2as0a2         216 EKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  264 (324)
T ss_dssp             CCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             CCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            789999864442               1245677889999999998764

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.24  E-value=0.0016  Score=47.15  Aligned_cols=101  Identities=12%  Similarity=0.080  Sum_probs=64.0

Q ss_pred             HcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHc
Q 048013           90 RANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        90 ~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      ...++||++||-+|+|. |..+..+++..+-.+|+++|.+++..+.+++    .+.-..+..+  ..+... ..    ..
T Consensus        51 ~l~lkpg~~VLDlGcG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d--~~~~~~-~~----~~  122 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFD--ASKPWK-YS----GI  122 (209)
T ss_dssp             CCCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSC--TTCGGG-TT----TT
T ss_pred             cCCCCCCCEEEEeCCcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEee--ccCccc-cc----cc
Confidence            45789999999999875 6677777777664479999999987776533    3322222211  111100 00    11


Q ss_pred             CCCccEEEEcCCC----HHHHHHHHHHhhcCCEEEEe
Q 048013          166 GTGIDVSFDCAGF----NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       166 ~~~~d~vi~~~g~----~~~~~~~~~~l~~~G~~v~~  198 (216)
                      ...+|+++..+.-    ...+..+.+.|+|+|+++++
T Consensus       123 ~~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  159 (209)
T d1nt2a_         123 VEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM  159 (209)
T ss_dssp             CCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cceEEEEEecccChhhHHHHHHHHHHHhccCCeEEEE
Confidence            2357777765542    23457788899999998865

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.19  E-value=0.0006  Score=52.77  Aligned_cols=101  Identities=16%  Similarity=0.072  Sum_probs=64.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      ..+|++||-.++|. |..++.+++ .+. .|+.+|.+++.++.+++    .|.+.+..+   ..+..+.++.+. ..+..
T Consensus       143 ~~~g~rVLDl~~gt-G~~s~~~a~-g~~-~V~~vD~s~~al~~a~~n~~~ngl~~~~~i---~~d~~~~~~~~~-~~~~~  215 (318)
T d1wxxa2         143 RFRGERALDVFSYA-GGFALHLAL-GFR-EVVAVDSSAEALRRAEENARLNGLGNVRVL---EANAFDLLRRLE-KEGER  215 (318)
T ss_dssp             GCCEEEEEEETCTT-THHHHHHHH-HEE-EEEEEESCHHHHHHHHHHHHHTTCTTEEEE---ESCHHHHHHHHH-HTTCC
T ss_pred             HhCCCeeeccCCCC-cHHHHHHHh-cCC-cEEeecchHHHHHHHHHHHHHcCCCCccee---eccHHHHhhhhH-hhhcC
Confidence            34689999987643 334455554 234 69999999998877753    566543222   134444444432 24568


Q ss_pred             ccEEEEcCCC---------------HHHHHHHHHHhhcCCEEEEecc
Q 048013          169 IDVSFDCAGF---------------NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       169 ~d~vi~~~g~---------------~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      ||+|+-..+.               .+.+..++++|+|+|.++.+.-
T Consensus       216 fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         216 FDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             EEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            9998864331               1345678889999999988764

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.0026  Score=48.16  Aligned_cols=107  Identities=20%  Similarity=0.229  Sum_probs=59.5

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCe--EEEEcCChHHH----HHHHHcC---CCE-EEeCCCCc-ccHHHHHHHHHHHc
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAPR--IVIVDVDDYRL----SVAKKLG---ADN-IVKVSTNL-QDIAEEVEKIQKAM  165 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~~--vv~~~~~~~~~----~~~~~~g---~~~-~~~~~~~~-~~~~~~~~~~~~~~  165 (216)
                      .+||+|+ +++|.++++.+...|++.  +....++.+..    +.++++.   ... .+..|-.+ ++..+.+.++   .
T Consensus         4 VvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~---~   80 (285)
T d1jtva_           4 VVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV---T   80 (285)
T ss_dssp             EEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC---T
T ss_pred             EEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhc---c
Confidence            3566786 899999999998899862  22233433322    2334432   222 22222222 2222222222   2


Q ss_pred             CCCccEEEEcCCCH-------------------------HHHHHHHHHhh--cCCEEEEeccCCCCCcc
Q 048013          166 GTGIDVSFDCAGFN-------------------------KTMSTALSATR--AGGKVCLVGMGHREMTV  207 (216)
Q Consensus       166 ~~~~d~vi~~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~~~~~~~  207 (216)
                      .+.+|+++++.|..                         ...+.+++.|.  .+|+++.++...+..+.
T Consensus        81 ~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~~~  149 (285)
T d1jtva_          81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGL  149 (285)
T ss_dssp             TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCC
T ss_pred             ccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcCCC
Confidence            35799999998852                         13466777774  36899988865443333

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00022  Score=52.47  Aligned_cols=107  Identities=12%  Similarity=0.029  Sum_probs=66.6

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-cCCCEEE------------eCCCCcccH-HH
Q 048013           91 ANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-LGADNIV------------KVSTNLQDI-AE  156 (216)
Q Consensus        91 ~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~g~~~~~------------~~~~~~~~~-~~  156 (216)
                      ..+.++.+||+.|+|. |..+..+++ .|++ |+++|.++.-++.+++ .+.....            ......-++ ..
T Consensus        41 l~~~~~~rvLd~GCG~-G~~a~~LA~-~G~~-V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  117 (229)
T d2bzga1          41 LKGKSGLRVFFPLCGK-AVEMKWFAD-RGHS-VVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCC  117 (229)
T ss_dssp             HTTCCSCEEEETTCTT-CTHHHHHHH-TTCE-EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEES
T ss_pred             cCCCCCCEEEEeCCCC-cHHHHHHHh-CCCc-EEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEc
Confidence            4577889999999886 777777776 6985 9999999998887754 3222110            000000000 00


Q ss_pred             HHHHHHHHcCCCccEEEEcCCC--------HHHHHHHHHHhhcCCEEEEecc
Q 048013          157 EVEKIQKAMGTGIDVSFDCAGF--------NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       157 ~~~~~~~~~~~~~d~vi~~~g~--------~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      .+.++.......+|+|+++..-        ...++.+.++|+|+|++++...
T Consensus       118 d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~  169 (229)
T d2bzga1         118 SIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL  169 (229)
T ss_dssp             CGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             chhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence            0111111224568999986532        2466888999999998876654

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.14  E-value=0.00063  Score=50.14  Aligned_cols=103  Identities=11%  Similarity=0.073  Sum_probs=64.9

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc----CCCEEEeCCCCcccHHHHHHHHHH
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL----GADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ++...+++|++||-+|+|. |..+..+++...-..|+++|.+++..+.+++.    +....+..+.  ..... ..    
T Consensus        67 l~~l~ikpG~~VLDlGcGs-G~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~--~~~~~-~~----  138 (230)
T d1g8sa_          67 LKVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA--NKPQE-YA----  138 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT--TCGGG-GT----
T ss_pred             HHhCCCCCCCEEEEeCEEc-CHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEee--ccCcc-cc----
Confidence            4556789999999999864 66777777764334799999999888777553    2222222211  11110 00    


Q ss_pred             HcCCCccEEEEcCCC----HHHHHHHHHHhhcCCEEEEe
Q 048013          164 AMGTGIDVSFDCAGF----NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~----~~~~~~~~~~l~~~G~~v~~  198 (216)
                      .....+|+++..+..    ...+..+.+.|+|+|++++.
T Consensus       139 ~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~  177 (230)
T d1g8sa_         139 NIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             TTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEE
Confidence            112345667665553    23467788899999988765

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.12  E-value=0.0024  Score=44.00  Aligned_cols=91  Identities=22%  Similarity=0.275  Sum_probs=69.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .-.|++++|.|-|-+|.-.++-++.+|+ +|++++.++-+.-++ .+.-..+..           +.+.    -...|++
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~alqA-~mdGf~v~~-----------~~~a----~~~aDi~   82 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQA-VMEGFNVVT-----------LDEI----VDKGDFF   82 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHH-HTTTCEECC-----------HHHH----TTTCSEE
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchhhHHH-HhcCCccCc-----------hhHc----cccCcEE
Confidence            5789999999999999999999999999 599999998553222 233333322           1221    2358999


Q ss_pred             EEcCCCHHH-HHHHHHHhhcCCEEEEecc
Q 048013          173 FDCAGFNKT-MSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       173 i~~~g~~~~-~~~~~~~l~~~G~~v~~g~  200 (216)
                      +-++|+.+. ...-++.|+++..+...|.
T Consensus        83 vTaTGn~~vI~~~h~~~MKdgaIl~N~GH  111 (163)
T d1v8ba1          83 ITCTGNVDVIKLEHLLKMKNNAVVGNIGH  111 (163)
T ss_dssp             EECCSSSSSBCHHHHTTCCTTCEEEECSS
T ss_pred             EEcCCCCccccHHHHHHhhCCeEEEeccc
Confidence            999999654 4677899999999999984

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.12  E-value=0.0019  Score=46.65  Aligned_cols=94  Identities=16%  Similarity=0.226  Sum_probs=61.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      ++++.+||-+|+|. |..+..+++ .|. .|+++|.+++.++.+++    .+....... .+..+       + ......
T Consensus        35 l~~~~~ILDiGcG~-G~~~~~la~-~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~-~d~~~-------l-~~~~~~  102 (226)
T d1ve3a1          35 MKKRGKVLDLACGV-GGFSFLLED-YGF-EVVGVDISEDMIRKAREYAKSRESNVEFIV-GDARK-------L-SFEDKT  102 (226)
T ss_dssp             CCSCCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEE-CCTTS-------C-CSCTTC
T ss_pred             cCCCCEEEEECCCc-chhhhhHhh-hhc-ccccccccccchhhhhhhhccccccccccc-ccccc-------c-cccCcC
Confidence            57888999999876 777777776 577 59999999988776654    333222111 11111       1 012356


Q ss_pred             ccEEEEcCCC--------HHHHHHHHHHhhcCCEEEEe
Q 048013          169 IDVSFDCAGF--------NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       169 ~d~vi~~~g~--------~~~~~~~~~~l~~~G~~v~~  198 (216)
                      +|+|+..-.-        ...++.+.+.|+|||++++.
T Consensus       103 fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~  140 (226)
T d1ve3a1         103 FDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY  140 (226)
T ss_dssp             EEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEE
Confidence            9998874431        12567888999999998754

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.12  E-value=0.0013  Score=45.46  Aligned_cols=45  Identities=16%  Similarity=0.189  Sum_probs=37.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCC
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGAD  142 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~  142 (216)
                      ++|.++|.|.||...+.-+...|++ |.+.+++.++.+.+...+..
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~-v~~~d~~~~~~~~~~~~~~~   46 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYL-LNVFDLVQSAVDGLVAAGAS   46 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCE-EEEECSSHHHHHHHHHTTCE
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCe-EEEEECchhhhhhhhhhhcc
Confidence            3688999999999999888888985 99999999998887766544

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.10  E-value=0.0012  Score=47.47  Aligned_cols=86  Identities=20%  Similarity=0.178  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .+++|.|+|.|.+|..+++.++.+|++ |++.+...+.....+  +..    .    .+..+.+.        ..|+++-
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~~-V~~~d~~~~~~~~~~--~~~----~----~~l~~~l~--------~sDii~~  102 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGAK-VITYDIFRNPELEKK--GYY----V----DSLDDLYK--------QADVISL  102 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCHHHHHT--TCB----C----SCHHHHHH--------HCSEEEE
T ss_pred             cCCeEEEecccccchhHHHhHhhhccc-ccccCcccccccccc--eee----e----cccccccc--------ccccccc
Confidence            478999999999999999999999995 888886654322221  111    0    12222221        2677666


Q ss_pred             cCCCHH----H-HHHHHHHhhcCCEEEEec
Q 048013          175 CAGFNK----T-MSTALSATRAGGKVCLVG  199 (216)
Q Consensus       175 ~~g~~~----~-~~~~~~~l~~~G~~v~~g  199 (216)
                      ++....    . -...++.|+++..++.+|
T Consensus       103 ~~plt~~T~~li~~~~l~~mk~~a~lIN~s  132 (197)
T d1j4aa1         103 HVPDVPANVHMINDESIAKMKQDVVIVNVS  132 (197)
T ss_dssp             CSCCCGGGTTCBSHHHHHHSCTTEEEEECS
T ss_pred             cCCccccccccccHHHHhhhCCccEEEecC
Confidence            655311    1 145566777777776665

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=97.08  E-value=0.002  Score=47.90  Aligned_cols=84  Identities=20%  Similarity=0.277  Sum_probs=52.2

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChH-------HHHHHHHcCCCEEE-eCCCCcccHHHHHHHHH
Q 048013           92 NIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDY-------RLSVAKKLGADNIV-KVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        92 ~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~-------~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~  162 (216)
                      ..+|+.++||+|+ +++|.++++.+...|+++++.+.++..       ..+.+++.|....+ ..+-.+.+   .++++.
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~---~~~~~~   81 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRE---SVRELL   81 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHH---HHHHHH
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHH---HHHHhh
Confidence            3578889999996 899999999998899876777766532       12334456654322 22222222   223322


Q ss_pred             HH--cCCCccEEEEcCCC
Q 048013          163 KA--MGTGIDVSFDCAGF  178 (216)
Q Consensus       163 ~~--~~~~~d~vi~~~g~  178 (216)
                      +.  ...++|.++.+.|.
T Consensus        82 ~~i~~~~~i~~vv~~ag~   99 (259)
T d2fr1a1          82 GGIGDDVPLSAVFHAAAT   99 (259)
T ss_dssp             HTSCTTSCEEEEEECCCC
T ss_pred             cccccccccccccccccc
Confidence            21  12368999999885

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.08  E-value=0.00023  Score=52.78  Aligned_cols=96  Identities=22%  Similarity=0.215  Sum_probs=64.1

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      .....+++++||-+|+|. |..+..+++ .|+ .|+++|.+++-++.+++    .+....+.. .   ++    .++  .
T Consensus        35 ~~~~~~~~~~iLDiGcGt-G~~~~~l~~-~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~-~---d~----~~l--~  101 (251)
T d1wzna1          35 KEDAKREVRRVLDLACGT-GIPTLELAE-RGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQ-G---DV----LEI--A  101 (251)
T ss_dssp             HHTCSSCCCEEEEETCTT-CHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEE-S---CG----GGC--C
T ss_pred             HHhcCCCCCEEEEeCCCC-Cccchhhcc-cce-EEEEEeeccccccccccccccccccchhee-h---hh----hhc--c
Confidence            445667788999999986 777777776 677 59999999987776654    333321211 1   11    111  1


Q ss_pred             cCCCccEEEEcCCC---------HHHHHHHHHHhhcCCEEEE
Q 048013          165 MGTGIDVSFDCAGF---------NKTMSTALSATRAGGKVCL  197 (216)
Q Consensus       165 ~~~~~d~vi~~~g~---------~~~~~~~~~~l~~~G~~v~  197 (216)
                      ....||+|+...+.         ...++.+.+.|+|+|++++
T Consensus       102 ~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii  143 (251)
T d1wzna1         102 FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT  143 (251)
T ss_dssp             CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence            24579998875432         1456788899999998875

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.0021  Score=47.49  Aligned_cols=49  Identities=29%  Similarity=0.319  Sum_probs=40.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHH-HHHcCCCE
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSV-AKKLGADN  143 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~-~~~~g~~~  143 (216)
                      -+|+++||+|+ +++|.++++.+...|++ |+.+++++++.+. .++++...
T Consensus         3 lkGKvalITGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~l~~~~   53 (248)
T d2o23a1           3 VKGLVAVITGGASGLGLATAERLVGQGAS-AVLLDLPNSGGEAQAKKLGNNC   53 (248)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECTTSSHHHHHHHHCTTE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHhCCCc
Confidence            36899999996 89999999999999995 9999999887664 45676543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.06  E-value=0.013  Score=40.81  Aligned_cols=43  Identities=9%  Similarity=0.129  Sum_probs=37.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcC
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLG  140 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g  140 (216)
                      .+|-++|.|.||...+.-+...|++ |++.+++.++.+.+.+.+
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~-V~v~dr~~~~~~~l~~~~   45 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFV-VCAFNRTVSKVDDFLANE   45 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSTHHHHHHHHTT
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCe-EEEEcCCHHHHHHHHHhc
Confidence            4688999999999999999889996 999999999988775543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.06  E-value=0.0023  Score=44.75  Aligned_cols=102  Identities=19%  Similarity=0.187  Sum_probs=63.2

Q ss_pred             HHHHHcC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCC-EEEeCCCCcccHHHHHHHHH
Q 048013           86 HACRRAN-IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGAD-NIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        86 ~~l~~~~-~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~~~~~~~  162 (216)
                      +.++..+ ..++++|+|+|+|+.+.+++..+...+ .+++++.|+.++.+.+ +.+... .+.....+.           
T Consensus         7 ~~l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~~-~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~-----------   74 (171)
T d1p77a1           7 TDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAERFQPYGNIQAVSMDS-----------   74 (171)
T ss_dssp             HHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG-----------
T ss_pred             HHHHHcCCCCCCCEEEEECCcHHHHHHHHHHcccC-ceeeeccchHHHHHHHHHHHhhccccchhhhcc-----------
Confidence            3454333 457889999999999999988887755 5799999998886654 444321 111111100           


Q ss_pred             HHcCCCccEEEEcCCCH---HHHHHHHHHhhcCCEEEEecc
Q 048013          163 KAMGTGIDVSFDCAGFN---KTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~~---~~~~~~~~~l~~~G~~v~~g~  200 (216)
                       ..-..+|++|+|++..   +........++++..++.+-.
T Consensus        75 -~~~~~~diiIN~tp~g~~~~~~~~~~~~~~~~~~~~D~vy  114 (171)
T d1p77a1          75 -IPLQTYDLVINATSAGLSGGTASVDAEILKLGSAFYDMQY  114 (171)
T ss_dssp             -CCCSCCSEEEECCCC-------CCCHHHHHHCSCEEESCC
T ss_pred             -ccccccceeeecccccccccccchhhhhhcccceeeeeec
Confidence             1234699999999861   111122345667777776654

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.01  E-value=0.002  Score=48.04  Aligned_cols=82  Identities=11%  Similarity=0.089  Sum_probs=49.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHH---cCCCeEEEEcCChHHHHHHH-Hc----CCCEEE--eCC-CCcccHHHHHHHHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARA---FGAPRIVIVDVDDYRLSVAK-KL----GADNIV--KVS-TNLQDIAEEVEKIQ  162 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~---~g~~~vv~~~~~~~~~~~~~-~~----g~~~~~--~~~-~~~~~~~~~~~~~~  162 (216)
                      .|+.+||.|+ +++|.++++.+..   .|+ +|+.+++++++++.+. ++    +...+.  ..| .+.++..+.+..+.
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~   83 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVR   83 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            5678888896 8999998765543   578 5999999998876542 22    222222  222 22223333344443


Q ss_pred             HH---cCCCccEEEEcCC
Q 048013          163 KA---MGTGIDVSFDCAG  177 (216)
Q Consensus       163 ~~---~~~~~d~vi~~~g  177 (216)
                      +.   .+...|+++++.|
T Consensus        84 ~~~~~~~~~~~~lvnnag  101 (259)
T d1oaaa_          84 ELPRPEGLQRLLLINNAA  101 (259)
T ss_dssp             HSCCCTTCCEEEEEECCC
T ss_pred             HhhhhccCceEEEEeccc
Confidence            32   2345788888766

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.98  E-value=0.0025  Score=48.87  Aligned_cols=99  Identities=18%  Similarity=0.181  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCC--------EEEeCCCCcccHHHHHHHHHHH
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGAD--------NIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      ....++|||+|+|. |..+-.+++.....+|.+++.+++-.+.++++-..        .+-.   ...|..+.+++    
T Consensus       104 ~~~pk~VLIiGgG~-G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i---~i~Da~~~l~~----  175 (312)
T d2b2ca1         104 HPDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDL---FCGDGFEFLKN----  175 (312)
T ss_dssp             SSSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEE---ECSCHHHHHHH----
T ss_pred             CCCCCeEEEeCCCc-hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEE---EEchHHHHHHh----
Confidence            35668999998754 44445566656666799999999999988875321        0111   01244444432    


Q ss_pred             cCCCccEEEEcCCC----------HHHHHHHHHHhhcCCEEEEec
Q 048013          165 MGTGIDVSFDCAGF----------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       165 ~~~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ..+.+|+||--...          .+.++.+.+.|+|+|.++.-+
T Consensus       176 ~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         176 HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             CTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            46689998854332          245678888999999999765

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.94  E-value=0.00072  Score=48.10  Aligned_cols=40  Identities=18%  Similarity=0.389  Sum_probs=34.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA  136 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~  136 (216)
                      =++|.|+|+|.||..++.++...|++ |+..|.+++.++.+
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~-V~l~D~~~~~l~~~   43 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTP-ILMKDINEHGIEQG   43 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCC-EEEECSSHHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCe-EEEEECCHHHHhhh
Confidence            36799999999999999888889996 99999998876544

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.92  E-value=0.0094  Score=42.74  Aligned_cols=97  Identities=10%  Similarity=0.081  Sum_probs=66.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      +...||-+|+|. |..++.+|+...-..+++++.+...+..+    ++.+.+++..+..+..+.   . +.  .....+|
T Consensus        29 ~~PlvLeIGcG~-G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l---~-~~--~~~~~~d  101 (204)
T d2fcaa1          29 DNPIHIEVGTGK-GQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL---T-DV--FEPGEVK  101 (204)
T ss_dssp             CCCEEEEECCTT-SHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGH---H-HH--CCTTSCC
T ss_pred             CCceEEEEEecC-cHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhh---h-cc--cCchhhh
Confidence            345678889886 88888999986444799999998776544    557877665443322222   2 11  1345688


Q ss_pred             EEEEcCCC--------------HHHHHHHHHHhhcCCEEEEe
Q 048013          171 VSFDCAGF--------------NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       171 ~vi~~~g~--------------~~~~~~~~~~l~~~G~~v~~  198 (216)
                      .|+-....              +..++.+.+.|+|+|.+.+.
T Consensus       102 ~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1         102 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             ccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            87765554              25778899999999999865

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.90  E-value=0.0093  Score=41.57  Aligned_cols=101  Identities=19%  Similarity=0.147  Sum_probs=63.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC-CCeEEEE-cCCh-HHHHHHHHcCCCEEEeCCCCcccHHHHHHHHH-------HHcCC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFG-APRIVIV-DVDD-YRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQ-------KAMGT  167 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~-~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~  167 (216)
                      +|.|.|.|-+|..+++.+.... .+ ++.+ +.+. .....+.+.+.+.....   .+.. ....+..       ...-.
T Consensus         4 rIaINGfGRIGR~v~Ral~~~~die-iVaINd~~~~~~~~~l~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~   78 (172)
T d2czca2           4 KVGVNGYGTIGKRVAYAVTKQDDME-LIGITKTKPDFEAYRAKELGIPVYAAS---EEFI-PRFEKEGFEVAGTLNDLLE   78 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEE-EEEEEESSCSHHHHHHHHTTCCEEESS---GGGH-HHHHHHTCCCSCBHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCce-EEEEecCCChHHHHHhhhcCceeeccc---ccce-eeecccCccccchhhhhhc
Confidence            6889999999999988886543 43 4444 4333 33455666665543321   1111 1111100       00123


Q ss_pred             CccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          168 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       168 ~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      ++|+|+||+|.-...+.+-..+..+-+.++.|.+..
T Consensus        79 ~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~~  114 (172)
T d2czca2          79 KVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKA  114 (172)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHHTCEEEECTTSCG
T ss_pred             cCCEEEECCCCCCCHHHHHHHHHcCCCEEEECCCCc
Confidence            799999999986666777788999999998886554

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.0035  Score=47.47  Aligned_cols=100  Identities=20%  Similarity=0.240  Sum_probs=64.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCC--------CEEEeCCCCcccHHHHHHHHHH
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGA--------DNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      .....++|||+|+|. |..+-.+++..+..++++++.+++-.+.++++-.        ..+..   ...|..+.++    
T Consensus        75 ~~~~pk~vLiiGgG~-G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i---~~~Da~~~l~----  146 (285)
T d2o07a1          75 SHPNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTL---HVGDGFEFMK----  146 (285)
T ss_dssp             TSSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEE---EESCHHHHHH----
T ss_pred             hCcCcCeEEEeCCCc-hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceE---EEccHHHHHh----
Confidence            345678999998754 4445556666666689999999998888876421        11111   1124433443    


Q ss_pred             HcCCCccEEEEcCCC----------HHHHHHHHHHhhcCCEEEEec
Q 048013          164 AMGTGIDVSFDCAGF----------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      .....+|+||.-...          .+.++.+.+.|+++|.++.-+
T Consensus       147 ~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         147 QNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             TCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence            245689998754332          245788889999999988654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.86  E-value=0.0022  Score=43.83  Aligned_cols=84  Identities=11%  Similarity=0.103  Sum_probs=57.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH-HHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA-KKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      +|.++|+|.+|.+.+.-+...|. .+++.+++.++.+.+ +++|.....       +..+.+        ...|+||=++
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~~~~~~~l~~~~g~~~~~-------~~~~~~--------~~~dvIilav   65 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLALPYAM-------SHQDLI--------DQVDLVILGI   65 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTCCBCS-------SHHHHH--------HTCSEEEECS
T ss_pred             EEEEEeccHHHHHHHHHHHhCCC-eEEEEcChHHhHHhhccccceeeec-------hhhhhh--------hccceeeeec
Confidence            57889999999999887777777 488999998887665 567765321       111111        1478888887


Q ss_pred             CCHHHHHHHHHHhhcCCEEEEe
Q 048013          177 GFNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       177 g~~~~~~~~~~~l~~~G~~v~~  198 (216)
                      .. ......++.++++..++.+
T Consensus        66 kp-~~~~~vl~~l~~~~~iis~   86 (152)
T d2ahra2          66 KP-QLFETVLKPLHFKQPIISM   86 (152)
T ss_dssp             CG-GGHHHHHTTSCCCSCEEEC
T ss_pred             ch-HhHHHHhhhcccceeEecc
Confidence            65 4456666667666555533

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00023  Score=49.38  Aligned_cols=91  Identities=11%  Similarity=0.076  Sum_probs=53.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCE-EEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADN-IVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      +|+|+|+|.+|.+....+...|.+ |..+++++++.+.....+... .... ....+..   ...     ..+|++|-++
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~-----~~~D~iii~v   71 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHE-VQGWLRVPQPYCSVNLVETDGSIFNE-SLTANDP---DFL-----ATSDLLLVTL   71 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCSEEEEEEECTTSCEEEE-EEEESCH---HHH-----HTCSEEEECS
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCc-eEEEEcCHHHhhhhccccCCcccccc-ccccchh---hhh-----cccceEEEee
Confidence            689999999999988888889985 899988876543322222211 0000 0001111   111     2699999999


Q ss_pred             CCHHH---HHHHHHHhhcCCEEEEe
Q 048013          177 GFNKT---MSTALSATRAGGKVCLV  198 (216)
Q Consensus       177 g~~~~---~~~~~~~l~~~G~~v~~  198 (216)
                      .....   ++.+...++++..++.+
T Consensus        72 ka~~~~~~~~~l~~~~~~~~~Iv~~   96 (167)
T d1ks9a2          72 KAWQVSDAVKSLASTLPVTTPILLI   96 (167)
T ss_dssp             CGGGHHHHHHHHHTTSCTTSCEEEE
T ss_pred             cccchHHHHHhhccccCcccEEeec
Confidence            97432   23333344556666655

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.0021  Score=48.26  Aligned_cols=96  Identities=20%  Similarity=0.129  Sum_probs=65.5

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCcc
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      ...++.+||-+|+|. |..+..+++.. +. .++.+|.+++-++.+++......+...+ ..+       + ......+|
T Consensus        81 ~~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~d-~~~-------l-~~~~~sfD  149 (268)
T d1p91a_          81 LDDKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVAS-SHR-------L-PFSDTSMD  149 (268)
T ss_dssp             SCTTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECC-TTS-------C-SBCTTCEE
T ss_pred             cCCCCCEEEEeCCCC-cHHHHHHHHHCCCC-EEEEecchHhhhhhhhcccccccceeee-hhh-------c-cCCCCCEE
Confidence            356778999999875 66777777765 44 5999999999888886643332221111 111       1 01245699


Q ss_pred             EEEEcCCCHHHHHHHHHHhhcCCEEEEec
Q 048013          171 VSFDCAGFNKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       171 ~vi~~~g~~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      +|+..-.. ..++++.+.|+|+|++++.-
T Consensus       150 ~v~~~~~~-~~~~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         150 AIIRIYAP-CKAEELARVVKPGGWVITAT  177 (268)
T ss_dssp             EEEEESCC-CCHHHHHHHEEEEEEEEEEE
T ss_pred             EEeecCCH-HHHHHHHHHhCCCcEEEEEe
Confidence            99976554 56788999999999998764

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=96.76  E-value=0.0042  Score=45.04  Aligned_cols=95  Identities=14%  Similarity=0.178  Sum_probs=62.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHH---cCCCeEEEEcCChHHHHHHHH----cCCCE-EEeCCCCcccHHHHHHHHHHH
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARA---FGAPRIVIVDVDDYRLSVAKK----LGADN-IVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~---~g~~~vv~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      .+++.+||.+|+|. |..+..+++.   .++ +|+++|.+++-++.+++    .+... ......   +.    ..   .
T Consensus        37 ~~~~~~vLDlGCGt-G~~~~~l~~~~~~~~~-~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~---d~----~~---~  104 (225)
T d1im8a_          37 VTADSNVYDLGCSR-GAATLSARRNINQPNV-KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCN---DI----RH---V  104 (225)
T ss_dssp             CCTTCEEEEESCTT-CHHHHHHHHTCCCSSC-EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECS---CT----TT---C
T ss_pred             cCCCCEEEEeccch-hhHHHHHHHhhcCCCC-ceEEeCCCHHHHHHHHHHhHhhcccchhhhccc---hh----hc---c
Confidence            68899999999875 6677777765   356 59999999988877754    23222 111111   11    01   1


Q ss_pred             cCCCccEEEEcCCC--------HHHHHHHHHHhhcCCEEEEec
Q 048013          165 MGTGIDVSFDCAGF--------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       165 ~~~~~d~vi~~~g~--------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ....+|+++....-        ...++.+.+.|+|+|.+++.-
T Consensus       105 ~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         105 EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence            23456776654331        256789999999999999764

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.75  E-value=0.004  Score=46.18  Aligned_cols=80  Identities=13%  Similarity=0.101  Sum_probs=48.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHH-H-HHHH----cCCCEEEeC-C-CCcccHHHHH----HHHHH
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRL-S-VAKK----LGADNIVKV-S-TNLQDIAEEV----EKIQK  163 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~-~-~~~~----~g~~~~~~~-~-~~~~~~~~~~----~~~~~  163 (216)
                      .+.||+|+ +++|.++++.+...|++ |+.++++.++. + ..++    .+....... + ..+....+.+    .+..+
T Consensus         2 ~vAlVTGas~GIG~aia~~la~~G~~-Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (266)
T d1mxha_           2 PAAVITGGARRIGHSIAVRLHQQGFR-VVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFR   80 (266)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHH
Confidence            35688896 89999999999999995 88888875542 2 2222    333333221 1 1112222222    22222


Q ss_pred             HcCCCccEEEEcCCC
Q 048013          164 AMGTGIDVSFDCAGF  178 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~  178 (216)
                      .. +.+|++++++|.
T Consensus        81 ~~-g~iDilvnnAG~   94 (266)
T d1mxha_          81 AF-GRCDVLVNNASA   94 (266)
T ss_dssp             HH-SCCCEEEECCCC
T ss_pred             Hh-CCCCEEEECCcc
Confidence            33 479999999983

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.75  E-value=0.0044  Score=47.08  Aligned_cols=99  Identities=22%  Similarity=0.257  Sum_probs=65.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcC---------CCEEEeCCCCcccHHHHHHHHHH
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLG---------ADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ....++|||+|.|. |..+-.+++..+..++.+++.+++-.+.++++-         ...-+.+    .|..+.+++   
T Consensus        78 ~~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~----~Da~~~l~~---  149 (290)
T d1xj5a_          78 IPNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI----GDGVAFLKN---  149 (290)
T ss_dssp             SSCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE----SCHHHHHHT---
T ss_pred             CCCCcceEEecCCc-hHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEE----ccHHHHHhh---
Confidence            35668999998654 444556666667667999999999888887742         1111111    244344433   


Q ss_pred             HcCCCccEEEEcCCC----------HHHHHHHHHHhhcCCEEEEec
Q 048013          164 AMGTGIDVSFDCAGF----------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ...+.+|+||--..+          .+.++.+.+.|+|+|.++.-.
T Consensus       150 ~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         150 AAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             SCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            234579987753332          357889999999999998764

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=96.75  E-value=0.0024  Score=49.08  Aligned_cols=98  Identities=22%  Similarity=0.216  Sum_probs=63.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcC------C---CEEEeCCCCcccHHHHHHHHHH
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLG------A---DNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g------~---~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      .+..++|||+|+|. |..+-.+++.....+|.+++.+++-.+.++++-      .   ..+-.   ...|..+.+++   
T Consensus        75 ~~~pk~VLiiG~G~-G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i---~~~Da~~~l~~---  147 (312)
T d1uira_          75 HPEPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVL---VIDDARAYLER---  147 (312)
T ss_dssp             SSCCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEE---EESCHHHHHHH---
T ss_pred             CCCcceEEEeCCCc-hHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEE---EEchHHHHhhh---
Confidence            35678999998764 445555666655557999999999888776631      1   11111   11344444443   


Q ss_pred             HcCCCccEEEEcC----C---------CHHHHHHHHHHhhcCCEEEEe
Q 048013          164 AMGTGIDVSFDCA----G---------FNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       164 ~~~~~~d~vi~~~----g---------~~~~~~~~~~~l~~~G~~v~~  198 (216)
                       .+..+|+||.-.    +         ..+.++.+.+.|+|+|.++.-
T Consensus       148 -~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         148 -TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             -CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             -cCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence             467899987432    1         135678899999999988754

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.74  E-value=0.0017  Score=49.53  Aligned_cols=96  Identities=20%  Similarity=0.190  Sum_probs=62.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCC---------C-EEEeCCCCcccHHHHHHHHHH
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGA---------D-NIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~---------~-~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ...++|||+|+|. |..+-.+++..+...|.+++.+++-.+.++++-.         . .++.     .|..+.++    
T Consensus        88 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~-----~Da~~~l~----  157 (295)
T d1inla_          88 PNPKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI-----ANGAEYVR----  157 (295)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE-----SCHHHHGG----
T ss_pred             CCCceEEEecCCc-hHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEh-----hhHHHHHh----
Confidence            4568999998754 4445556665666679999999998888766421         1 1111     34433333    


Q ss_pred             HcCCCccEEEEcCCC-----------HHHHHHHHHHhhcCCEEEEec
Q 048013          164 AMGTGIDVSFDCAGF-----------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~-----------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ...+.+|+||.-...           .+.++.+.+.|+++|.++.-.
T Consensus       158 ~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         158 KFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             GCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence            346689998753221           356788999999999998764

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.74  E-value=0.0017  Score=46.63  Aligned_cols=49  Identities=29%  Similarity=0.351  Sum_probs=43.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCE
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADN  143 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~  143 (216)
                      -.|++|+|.|.|.+|..+++++...|++ |++.|.+.++......++...
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Gak-vvv~d~d~~~~~~~~~~g~~~   73 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGAQ-LLVADTDTERVAHAVALGHTA   73 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHTTCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEecchHHHHHHHHhhcccc
Confidence            4789999999999999999999999994 999999999988888887653

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00086  Score=41.97  Aligned_cols=36  Identities=28%  Similarity=0.264  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChH
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDY  131 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~  131 (216)
                      .+++|+|+|.|..|+++++++...|++ |++.|.+..
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~-v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVT-PRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCC-CEEEESSSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCE-EEEeeCCcC
Confidence            578899999999999999999999996 888887543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.72  E-value=0.00089  Score=50.65  Aligned_cols=99  Identities=17%  Similarity=0.116  Sum_probs=65.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcC-----CC---EEEeCCCCcccHHHHHHHHHHH
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLG-----AD---NIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g-----~~---~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      ..+.++|||+|+|. |..+-.+++..+..+|.+++.+++-.+.++++-     ..   .+..+   ..|..+.+++    
T Consensus        73 ~~~p~~vLiiGgG~-G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~---~~D~~~~l~~----  144 (274)
T d1iy9a_          73 HPNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQ---VDDGFMHIAK----  144 (274)
T ss_dssp             SSSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEE---ESCSHHHHHT----
T ss_pred             cCCcceEEecCCCC-cHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEE---echHHHHHhh----
Confidence            35668999998754 445556666667668999999999888887642     11   11111   1233333432    


Q ss_pred             cCCCccEEEEcCCC----------HHHHHHHHHHhhcCCEEEEec
Q 048013          165 MGTGIDVSFDCAGF----------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       165 ~~~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ....+|+||--...          .+.++.+.+.|+|+|.++.-+
T Consensus       145 ~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         145 SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             cCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence            45689998754322          367889999999999998754

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.013  Score=43.15  Aligned_cols=35  Identities=26%  Similarity=0.474  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      +.+|+|+|+|++|..++..+...|..++..+|.+.
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            46899999999999999999999999899987543

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.68  E-value=0.0061  Score=43.20  Aligned_cols=98  Identities=15%  Similarity=0.263  Sum_probs=62.3

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCC--EEEeCCCCcccHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGAD--NIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~  162 (216)
                      +.....++++||-+|+|. |..++.+++ .+. .|+++|.++...+.+++    .+..  .+.....   |+.+   .+ 
T Consensus        46 ~~l~~~~~~~VLDiGcG~-G~~~~~la~-~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~---d~~~---~~-  115 (194)
T d1dusa_          46 ENVVVDKDDDILDLGCGY-GVIGIALAD-EVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHS---DLYE---NV-  115 (194)
T ss_dssp             HHCCCCTTCEEEEETCTT-SHHHHHHGG-GSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEEC---STTT---TC-
T ss_pred             HhCCcCCCCeEEEEeecC-ChhHHHHHh-hcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEc---chhh---hh-
Confidence            556788999999999864 556666665 444 69999999887776643    3332  1211111   1111   11 


Q ss_pred             HHcCCCccEEEEcCC---C----HHHHHHHHHHhhcCCEEEEe
Q 048013          163 KAMGTGIDVSFDCAG---F----NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g---~----~~~~~~~~~~l~~~G~~v~~  198 (216)
                        ....+|+|+....   .    ...++.+.+.|+|+|+++++
T Consensus       116 --~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         116 --KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             --TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence              2457999997433   2    23467788899999998754

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.68  E-value=0.0012  Score=48.79  Aligned_cols=92  Identities=18%  Similarity=0.159  Sum_probs=59.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      ..++++||-+|+|. |..+..+++ .|. .++++|.+++-++.+++    .+...-+.. .   |+    .++  ...+.
T Consensus        35 ~~~~~~vLDiGCG~-G~~~~~l~~-~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~-~---d~----~~~--~~~~~  101 (246)
T d1y8ca_          35 NLVFDDYLDLACGT-GNLTENLCP-KFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLAC-Q---DI----SNL--NINRK  101 (246)
T ss_dssp             TCCTTEEEEETCTT-STTHHHHGG-GSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEEC-C---CG----GGC--CCSCC
T ss_pred             CCCCCeEEEEeCcC-CHHHHHHHH-hCC-ccEeeccchhhhhhccccccccCccceeec-c---ch----hhh--ccccc
Confidence            34567999999875 777777766 577 49999999987766643    344322221 1   11    111  12457


Q ss_pred             ccEEEEcCCC------H----HHHHHHHHHhhcCCEEEE
Q 048013          169 IDVSFDCAGF------N----KTMSTALSATRAGGKVCL  197 (216)
Q Consensus       169 ~d~vi~~~g~------~----~~~~~~~~~l~~~G~~v~  197 (216)
                      ||+|+...+.      .    ..++.+.+.|+|+|.+++
T Consensus       102 fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         102 FDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             EEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            9999964332      1    256778888999998874

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.67  E-value=0.0033  Score=48.58  Aligned_cols=36  Identities=17%  Similarity=0.034  Sum_probs=28.6

Q ss_pred             CCEEEEEcCC---HHHHHHHHHHHHcCCCeEEEEcCChHH
Q 048013           96 ETNVLIMGSG---PIGLVTMLAARAFGAPRIVIVDVDDYR  132 (216)
Q Consensus        96 ~~~vlv~Gag---~~G~~~i~~a~~~g~~~vv~~~~~~~~  132 (216)
                      ++..||+|+|   ++|.++++.+...|++ |+...++...
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~-V~i~~~~~~~   40 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVK-IIFGIWPPVY   40 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEECGGGH
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCE-EEEEeCchhh
Confidence            5678999943   8999999999999996 7777666543

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.61  E-value=0.0052  Score=43.64  Aligned_cols=94  Identities=17%  Similarity=0.207  Sum_probs=59.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----HcCCCEEEeCCCCcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KLGADNIVKVSTNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      ++.+||-+|+| .|..+..+++ .|+ .|+++|.+++.++.++    +.+...+.....+..+       +  .....||
T Consensus        30 ~~grvLDiGcG-~G~~~~~la~-~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~-------~--~~~~~fD   97 (198)
T d2i6ga1          30 APGRTLDLGCG-NGRNSLYLAA-NGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNT-------L--TFDGEYD   97 (198)
T ss_dssp             CSCEEEEETCT-TSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTT-------C--CCCCCEE
T ss_pred             CCCcEEEECCC-CCHHHHHHHH-Hhh-hhccccCcHHHHHHHHHHhhhccccchhhhheeccc-------c--ccccccc
Confidence            34489999987 4777777776 588 4999999998777654    3455432211011000       0  1235699


Q ss_pred             EEEEcCC-----C---HHHHHHHHHHhhcCCEEEEecc
Q 048013          171 VSFDCAG-----F---NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       171 ~vi~~~g-----~---~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      +|+...-     .   ...++.+.+.|+|+|++++...
T Consensus        98 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1          98 FILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             EEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9886332     1   2466778888999999887643

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=96.60  E-value=0.0081  Score=46.13  Aligned_cols=103  Identities=15%  Similarity=0.029  Sum_probs=64.8

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCC--CEEEeCCCCcccHHHHHHHHHHHc
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGA--DNIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~--~~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      .+.+|++||-..+|. |..++.+ ...|+..|+.+|.++...+.+++    .+.  ..+..+   ..|..+.++.+. ..
T Consensus       141 ~~~~g~~VLdlf~~~-G~~sl~a-a~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i---~~d~~~~l~~~~-~~  214 (317)
T d2b78a2         141 GSAAGKTVLNLFSYT-AAFSVAA-AMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLV---VMDVFDYFKYAR-RH  214 (317)
T ss_dssp             TTTBTCEEEEETCTT-THHHHHH-HHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEE---ESCHHHHHHHHH-HT
T ss_pred             HhhCCCceeecCCCC-cHHHHHH-HhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEE---EccHHHHHHHHH-hh
Confidence            467899999885432 2233333 34688779999999988877754    233  222111   235555555443 24


Q ss_pred             CCCccEEEEcCCC---------------HHHHHHHHHHhhcCCEEEEecc
Q 048013          166 GTGIDVSFDCAGF---------------NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       166 ~~~~d~vi~~~g~---------------~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      +..||+||--.+.               .+.+..++++|+|+|.++.+.-
T Consensus       215 ~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         215 HLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             TCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            6689998864331               1356778889999999987663

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.58  E-value=0.024  Score=38.29  Aligned_cols=39  Identities=23%  Similarity=0.474  Sum_probs=32.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHH
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYR  132 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~  132 (216)
                      ..+.+|.|+|+|.+|...+..+...+. +.++.+|.++++
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~   43 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESK   43 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecccc
Confidence            456789999999999998888877764 469999999876

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.58  E-value=0.0032  Score=44.85  Aligned_cols=36  Identities=25%  Similarity=0.283  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChH
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDY  131 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~  131 (216)
                      .++++.|+|.|.+|...++.++.+|.+ ++..+....
T Consensus        46 ~g~tvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~~~   81 (191)
T d1gdha1          46 DNKTLGIYGFGSIGQALAKRAQGFDMD-IDYFDTHRA   81 (191)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECSSCC
T ss_pred             cccceEEeecccchHHHHHHHHhhccc-ccccccccc
Confidence            378999999999999999999999995 888887544

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.0049  Score=47.14  Aligned_cols=96  Identities=20%  Similarity=0.262  Sum_probs=56.2

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHH---HHHHcCCC-EEEeCCCCcccHHHHHHHHHHHcC
Q 048013           91 ANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLS---VAKKLGAD-NIVKVSTNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        91 ~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~---~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      ....++++||.+|+| .|.+++.+|+ .|+++|++++.++.-..   ..++.+.. .+..+..+..       ++. ...
T Consensus        31 ~~~~~~~~VLDiGcG-~G~lsl~aa~-~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~-------~l~-~~~  100 (311)
T d2fyta1          31 PHIFKDKVVLDVGCG-TGILSMFAAK-AGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIE-------EVH-LPV  100 (311)
T ss_dssp             GGGTTTCEEEEETCT-TSHHHHHHHH-TTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTT-------TSC-CSC
T ss_pred             cccCCcCEEEEECCC-CCHHHHHHHH-cCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHH-------Hhc-Ccc
Confidence            356789999999987 4666666666 58778999999875432   22333432 2221111111       110 123


Q ss_pred             CCccEEEEcCCC-----H----HHHHHHHHHhhcCCEEE
Q 048013          167 TGIDVSFDCAGF-----N----KTMSTALSATRAGGKVC  196 (216)
Q Consensus       167 ~~~d~vi~~~g~-----~----~~~~~~~~~l~~~G~~v  196 (216)
                      ..+|+|+...-.     .    ......-+.|+|+|+++
T Consensus       101 ~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         101 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             ccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence            579999863222     1    22333446799999886

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=96.57  E-value=0.009  Score=44.30  Aligned_cols=85  Identities=22%  Similarity=0.387  Sum_probs=53.9

Q ss_pred             CCCCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCChHHH-HH-HHHcCCCE-EEeCC-CCcccHHHHHHHHHHHc
Q 048013           93 IGPETNVLIMGS-G--PIGLVTMLAARAFGAPRIVIVDVDDYRL-SV-AKKLGADN-IVKVS-TNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        93 ~~~~~~vlv~Ga-g--~~G~~~i~~a~~~g~~~vv~~~~~~~~~-~~-~~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~~  165 (216)
                      .-+|+++||.|+ |  ++|.++++.+...|++ |+.+++++++. +. .++++... .+..+ ..+++..+.+..+.+..
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~-Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~   81 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQ-LVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAI   81 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCE-EEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCE-EEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhcc
Confidence            457899999994 4  5999999999999995 88888887764 33 34455432 22222 22223333333433222


Q ss_pred             --CCCccEEEEcCCC
Q 048013          166 --GTGIDVSFDCAGF  178 (216)
Q Consensus       166 --~~~~d~vi~~~g~  178 (216)
                        ...+|+++++++.
T Consensus        82 ~~~~~ld~~i~~ag~   96 (268)
T d2h7ma1          82 GAGNKLDGVVHSIGF   96 (268)
T ss_dssp             CTTCCEEEEEECCCC
T ss_pred             ccCCCcceeeecccc
Confidence              3568999999883

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.56  E-value=0.0049  Score=43.55  Aligned_cols=87  Identities=22%  Similarity=0.171  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .++++.|+|.|.+|..+++.++.+|.+ |++.++...+.+.. ..+...        .+..+.+.        ..|+|.-
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~fg~~-v~~~d~~~~~~~~~-~~~~~~--------~~l~ell~--------~sDiv~~  104 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAFGAY-VVAYDPYVSPARAA-QLGIEL--------LSLDDLLA--------RADFISV  104 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECTTSCHHHHH-HHTCEE--------CCHHHHHH--------HCSEEEE
T ss_pred             cceeeeeccccchhHHHHHHhhhccce-EEeecCCCChhHHh-hcCcee--------ccHHHHHh--------hCCEEEE
Confidence            578999999999999999999999994 89998765443322 222221        12222221        3677777


Q ss_pred             cCCCHH----H-HHHHHHHhhcCCEEEEec
Q 048013          175 CAGFNK----T-MSTALSATRAGGKVCLVG  199 (216)
Q Consensus       175 ~~g~~~----~-~~~~~~~l~~~G~~v~~g  199 (216)
                      ++.-.+    . -...++.|+++..++.+|
T Consensus       105 ~~Plt~~T~~lin~~~l~~mk~~a~lIN~s  134 (184)
T d1ygya1         105 HLPKTPETAGLIDKEALAKTKPGVIIVNAA  134 (184)
T ss_dssp             CCCCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred             cCCCCchhhhhhhHHHHhhhCCCceEEEec
Confidence            665321    1 146667777777777766

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.48  E-value=0.022  Score=41.48  Aligned_cols=104  Identities=15%  Similarity=0.171  Sum_probs=69.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHHH----HcCCCEEEeCCCCcccHHHHHHHHHHH--c
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVAK----KLGADNIVKVSTNLQDIAEEVEKIQKA--M  165 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~--~  165 (216)
                      ....++||-+|.+ +|..++.+++.+.- .+++.++.+++..+.++    +.|....+.+  ...+..+.+.++.+.  .
T Consensus        57 ~~~~k~iLEiGT~-~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~--~~g~a~~~L~~l~~~~~~  133 (227)
T d1susa1          57 LINAKNTMEIGVY-TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDF--REGPALPVLDEMIKDEKN  133 (227)
T ss_dssp             HHTCCEEEEECCG-GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEE--EESCHHHHHHHHHHCGGG
T ss_pred             hcCCCcEEEecch-hhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceee--eehHHHHHHHHHHhcccc
Confidence            3466899999965 37777888887642 26999999998776664    3566542221  224556666665432  2


Q ss_pred             CCCccEEEEcCCC---HHHHHHHHHHhhcCCEEEEec
Q 048013          166 GTGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       166 ~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ...||.||--..-   ...++.++++|+++|.++.=-
T Consensus       134 ~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DN  170 (227)
T d1susa1         134 HGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDN  170 (227)
T ss_dssp             TTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred             CCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEcc
Confidence            3579998754432   356789999999999887643

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.01  Score=41.58  Aligned_cols=37  Identities=27%  Similarity=0.504  Sum_probs=32.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      ....++|+|+|+|+.|+.++..+...|.+ |+++++++
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~-Vtl~E~~~   76 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGHQ-VTLFDAHS   76 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTCE-EEEEESSS
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhccc-eEEEeccC
Confidence            35568999999999999999999999985 99998764

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0033  Score=44.79  Aligned_cols=39  Identities=28%  Similarity=0.411  Sum_probs=34.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA  136 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~  136 (216)
                      ++|.|+|+|.||..+++++...|+. |+..|.+++.++.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~-V~l~D~~~~~l~~a   43 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHT-VVLVDQTEDILAKS   43 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCc-EEEEECChHHHHHH
Confidence            5899999999999999999999995 99999998766544

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=96.43  E-value=0.0076  Score=45.09  Aligned_cols=36  Identities=14%  Similarity=0.147  Sum_probs=26.7

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChHHHH
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAPRIVIV-DVDDYRLS  134 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~-~~~~~~~~  134 (216)
                      .+||+|+ +++|.++++.+...|++ |++. .+++++.+
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~-V~i~~~~~~~~~~   41 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYA-VCLHYHRSAAEAN   41 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCCHHHHH
Confidence            4577786 89999999999999996 6655 44554443

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.42  E-value=0.0061  Score=46.73  Aligned_cols=94  Identities=17%  Similarity=0.241  Sum_probs=56.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHH---HHHHHcCCCE-EEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRL---SVAKKLGADN-IVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~---~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      +.++++||.+|+|. |.+++.+++ .|+++|++++.++...   +.++..+... +.....+..+       + +.....
T Consensus        31 ~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~-------~-~~~~~~  100 (316)
T d1oria_          31 LFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEE-------V-ELPVEK  100 (316)
T ss_dssp             HHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTT-------C-CCSSSC
T ss_pred             cCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHH-------c-ccccce
Confidence            56889999999875 767666666 6877899999886432   2223344332 2211111111       1 012357


Q ss_pred             ccEEEEcCCC---------HHHHHHHHHHhhcCCEEE
Q 048013          169 IDVSFDCAGF---------NKTMSTALSATRAGGKVC  196 (216)
Q Consensus       169 ~d~vi~~~g~---------~~~~~~~~~~l~~~G~~v  196 (216)
                      +|+++.....         +..+...-+.|+|+|+++
T Consensus       101 ~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         101 VDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             EEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            8998763322         234556678999999886

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.41  E-value=0.0029  Score=44.68  Aligned_cols=83  Identities=18%  Similarity=0.145  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .++++.|+|.|.+|..++++++.+|++ |++.+++...       +...   +   ..+    +.++.    ...|+++-
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~-v~~~d~~~~~-------~~~~---~---~~~----l~ell----~~sDiv~~   98 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQ-VRGFSRTPKE-------GPWR---F---TNS----LEEAL----REARAAVC   98 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCE-EEEECSSCCC-------SSSC---C---BSC----SHHHH----TTCSEEEE
T ss_pred             cCceEEEeccccccccceeeeeccccc-cccccccccc-------ccee---e---eec----hhhhh----hccchhhc
Confidence            578999999999999999999999994 9999876421       1100   0   011    22221    24777777


Q ss_pred             cCCCHH----H-HHHHHHHhhcCCEEEEec
Q 048013          175 CAGFNK----T-MSTALSATRAGGKVCLVG  199 (216)
Q Consensus       175 ~~g~~~----~-~~~~~~~l~~~G~~v~~g  199 (216)
                      ++.-.+    . -...++.|+++..++.+|
T Consensus        99 ~~pl~~~t~~li~~~~l~~mk~~ailIN~~  128 (181)
T d1qp8a1          99 ALPLNKHTRGLVKYQHLALMAEDAVFVNVG  128 (181)
T ss_dssp             CCCCSTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred             ccccccccccccccceeeeccccceEEecc
Confidence            665321    1 156777778888888776

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.39  E-value=0.015  Score=43.59  Aligned_cols=97  Identities=19%  Similarity=0.206  Sum_probs=60.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcC-CC-------------EEEeCCCCcccHHHHH
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLG-AD-------------NIVKVSTNLQDIAEEV  158 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g-~~-------------~~~~~~~~~~~~~~~~  158 (216)
                      ..+.++|||+|+|. |..+-.+++ .+...|.+++.+++-.+.++++- ..             .+..+   ..|..+.+
T Consensus        70 ~~~p~~vLiiG~G~-G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~---~~Da~~~l  144 (276)
T d1mjfa_          70 HPKPKRVLVIGGGD-GGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLT---IGDGFEFI  144 (276)
T ss_dssp             SSCCCEEEEEECTT-SHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEE---ESCHHHHH
T ss_pred             CCCCceEEEecCCc-hHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEE---EChHHHHH
Confidence            45678999998653 333334444 34457999999999888887632 11             11111   13443333


Q ss_pred             HHHHHHcCCCccEEEEcCCC----------HHHHHHHHHHhhcCCEEEEec
Q 048013          159 EKIQKAMGTGIDVSFDCAGF----------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       159 ~~~~~~~~~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ++     .+++|+||.-...          .+.++.+.+.|+++|.++.-+
T Consensus       145 ~~-----~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         145 KN-----NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             HH-----CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hc-----cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            32     4679997753222          356788999999999988654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=96.38  E-value=0.0029  Score=46.01  Aligned_cols=95  Identities=19%  Similarity=0.115  Sum_probs=59.1

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccE
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      ....+.+||-+|+|. |..+..+++ .|.+ |+++|.+++..+.+++...+.+.......++       +  .....||+
T Consensus        17 ~~~~~~~VLDiGcG~-G~~~~~l~~-~g~~-v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~-------~--~~~~~fD~   84 (225)
T d2p7ia1          17 PFFRPGNLLELGSFK-GDFTSRLQE-HFND-ITCVEASEEAISHAQGRLKDGITYIHSRFED-------A--QLPRRYDN   84 (225)
T ss_dssp             GGCCSSCEEEESCTT-SHHHHHHTT-TCSC-EEEEESCHHHHHHHHHHSCSCEEEEESCGGG-------C--CCSSCEEE
T ss_pred             hhCCCCcEEEEeCCC-cHHHHHHHH-cCCe-EEEEeCcHHHhhhhhcccccccccccccccc-------c--cccccccc
Confidence            334577899999875 666666654 5775 9999999999888876433332221111111       1  12457999


Q ss_pred             EEEcC-----CCH-HHHHHHH-HHhhcCCEEEEe
Q 048013          172 SFDCA-----GFN-KTMSTAL-SATRAGGKVCLV  198 (216)
Q Consensus       172 vi~~~-----g~~-~~~~~~~-~~l~~~G~~v~~  198 (216)
                      |+..-     .++ ..+..+. ++|+|+|.+++.
T Consensus        85 I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          85 IVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             EEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ccccceeEecCCHHHHHHHHHHHhcCCCceEEEE
Confidence            87532     222 3345565 578999988853

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.37  E-value=0.0009  Score=50.89  Aligned_cols=102  Identities=18%  Similarity=0.200  Sum_probs=61.7

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc----CCCEEEe-CCCCcccHHHHHHHHHHHc
Q 048013           91 ANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL----GADNIVK-VSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        91 ~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~----g~~~~~~-~~~~~~~~~~~~~~~~~~~  165 (216)
                      .+.+++++||-+|+|. |..++.+++. |+ .|+++|.+++-++.+++.    +...... ......++...-..+  ..
T Consensus        52 l~~~~~~~vLD~GcG~-G~~~~~la~~-g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  126 (292)
T d1xvaa_          52 LRQHGCHRVLDVACGT-GVDSIMLVEE-GF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV--PA  126 (292)
T ss_dssp             HHHTTCCEEEESSCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS--CC
T ss_pred             hhhcCCCEEEEecCCC-cHHHHHHHHc-CC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccccc--CC
Confidence            3445678999999875 7788888874 88 599999999877766432    2111000 000001111111111  12


Q ss_pred             CCCccEEEEcCCC--------------HHHHHHHHHHhhcCCEEEE
Q 048013          166 GTGIDVSFDCAGF--------------NKTMSTALSATRAGGKVCL  197 (216)
Q Consensus       166 ~~~~d~vi~~~g~--------------~~~~~~~~~~l~~~G~~v~  197 (216)
                      ...+|.|+.....              ...++.+.+.|+|+|++++
T Consensus       127 ~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~  172 (292)
T d1xvaa_         127 GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI  172 (292)
T ss_dssp             TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence            4579998864321              1367889999999999886

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.32  E-value=0.004  Score=46.52  Aligned_cols=97  Identities=15%  Similarity=0.164  Sum_probs=62.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCE-EEeCCCCcccHHHHHHHHHHHcCC
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADN-IVKVSTNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~  167 (216)
                      +++|++||..++|. |..++.+|+..++ +|+++|.+++..+.+++    .+... +..+..+..+       +  ....
T Consensus       105 ~~~g~~VlD~~aG~-G~~~l~~a~~~~~-~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~-------~--~~~~  173 (260)
T d2frna1         105 AKPDELVVDMFAGI-GHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRD-------F--PGEN  173 (260)
T ss_dssp             CCTTCEEEETTCTT-TTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTT-------C--CCCS
T ss_pred             cCCccEEEECcceE-cHHHHHHHHhCCc-EEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHH-------h--ccCC
Confidence            67999999988753 5566667765434 69999999998877744    45543 2222221111       1  1234


Q ss_pred             CccEEEEc-CC-CHHHHHHHHHHhhcCCEEEEecc
Q 048013          168 GIDVSFDC-AG-FNKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       168 ~~d~vi~~-~g-~~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      .+|.|+-. .. ..+.+..+++.++++|.+....+
T Consensus       174 ~~D~Ii~~~p~~~~~~l~~a~~~l~~gG~lh~~~~  208 (260)
T d2frna1         174 IADRILMGYVVRTHEFIPKALSIAKDGAIIHYHNT  208 (260)
T ss_dssp             CEEEEEECCCSSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCEEEECCCCchHHHHHHHHhhcCCCCEEEEEec
Confidence            58866543 22 34567889999999999876654

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.32  E-value=0.052  Score=37.52  Aligned_cols=100  Identities=19%  Similarity=0.197  Sum_probs=59.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC-CCeEEEE-cCCh-HHHHHHHHcCCCEEEeCCCCcccHHH-------HHHHHHHHcCC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFG-APRIVIV-DVDD-YRLSVAKKLGADNIVKVSTNLQDIAE-------EVEKIQKAMGT  167 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~-~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~  167 (216)
                      +|.|.|.|-+|..+++++...+ .+ ++.+ +.+. .....+..++.+...........+.+       ...++    -.
T Consensus         3 ~VgINGfGRIGR~v~R~l~~~~di~-vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~----~~   77 (171)
T d1cf2o1           3 AVAINGYGTVGKRVADAIAQQDDMK-VIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM----LD   77 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSSSEE-EEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH----HH
T ss_pred             EEEEEcCcHHHHHHHHHHHhCCCce-EEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHh----hc
Confidence            6889999999999999886654 43 4444 3332 33445556665543221111111110       01111    13


Q ss_pred             CccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          168 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       168 ~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      ++|+|+||+|.-...+.+-..+..+-+.++.+.+.
T Consensus        78 ~vDvViEcTG~f~~~~~~~~hl~~G~K~vi~~~~~  112 (171)
T d1cf2o1          78 EADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGEK  112 (171)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSC
T ss_pred             CCCEEEEccCCCCCHHHHHHHHHcCCCEEEECCCC
Confidence            69999999998666566777888888888776444

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.31  E-value=0.004  Score=44.35  Aligned_cols=36  Identities=28%  Similarity=0.353  Sum_probs=31.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      -.|+++.|+|.|.+|..+++.++.+|++ |++.++..
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~~   82 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAKAFGFN-VLFYDPYL   82 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECTTS
T ss_pred             eeCceEEEeccccccccceeeeeccccc-eeeccCcc
Confidence            3578999999999999999999999995 88887754

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.016  Score=41.92  Aligned_cols=106  Identities=21%  Similarity=0.266  Sum_probs=69.3

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHHH----HcCCCEEEeCCCCcccHHHHHHHHHHHc
Q 048013           91 ANIGPETNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVAK----KLGADNIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        91 ~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      .+....++||-+|.+. |..++.+|+.+.. .+++.++.+++..+.++    +.|....+..  ...+..+.+.++....
T Consensus        55 ~~~~~~k~vLEiGt~~-GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~--~~Gda~e~l~~~~~~~  131 (219)
T d2avda1          55 ARLIQAKKALDLGTFT-GYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDL--RLKPALETLDELLAAG  131 (219)
T ss_dssp             HHHTTCCEEEEECCTT-SHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEE--EESCHHHHHHHHHHTT
T ss_pred             HHccCCCeEEEEechh-hHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEE--EEeehhhcchhhhhhc
Confidence            3445678999999753 6677778877532 26999999998766554    3565432221  1245555555543222


Q ss_pred             -CCCccEEEEcCCC---HHHHHHHHHHhhcCCEEEEec
Q 048013          166 -GTGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       166 -~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~~v~~g  199 (216)
                       ...||.||--..-   ...++.+++.|++||.++.=.
T Consensus       132 ~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn  169 (219)
T d2avda1         132 EAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLR  169 (219)
T ss_dssp             CTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence             3569998865543   345788999999999998644

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.25  E-value=0.0076  Score=43.28  Aligned_cols=73  Identities=15%  Similarity=0.049  Sum_probs=45.7

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCC-eEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAP-RIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~-~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .+|||+|+ |.+|..+++.+...|.+ .++...++.++...+. -+...+ ..+.  .+.. .+.+..    .++|.++.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~-~~~~~~-~~d~--~~~~-~~~~~~----~~~d~vi~   74 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG-GEADVF-IGDI--TDAD-SINPAF----QGIDALVI   74 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTT-CCTTEE-ECCT--TSHH-HHHHHH----TTCSEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhcc-CCcEEE-Eeee--cccc-cccccc----ccceeeEE
Confidence            68999996 99999999999988865 3566677776654432 123322 2211  1222 222221    36899999


Q ss_pred             cCCC
Q 048013          175 CAGF  178 (216)
Q Consensus       175 ~~g~  178 (216)
                      +++.
T Consensus        75 ~a~~   78 (252)
T d2q46a1          75 LTSA   78 (252)
T ss_dssp             CCCC
T ss_pred             EEee
Confidence            8763

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.22  E-value=0.084  Score=35.32  Aligned_cols=89  Identities=21%  Similarity=0.327  Sum_probs=58.9

Q ss_pred             CEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEc
Q 048013           97 TNVLIMG-SGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC  175 (216)
Q Consensus        97 ~~vlv~G-ag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  175 (216)
                      ++|.|+| .|.+|...+..++..|++ |.+.|++.+........+.+.++.. .......+.+.++.... ..=.+++|+
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~-V~~~d~~~~~~~~~~~~~~~~v~~~-~~~~~~~~v~~~~~~~~-~~~~iiiD~   86 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYP-ISILDREDWAVAESILANADVVIVS-VPINLTLETIERLKPYL-TENMLLADL   86 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCC-EEEECTTCGGGHHHHHTTCSEEEEC-SCGGGHHHHHHHHGGGC-CTTSEEEEC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCC-cEecccccccccchhhhhccccccc-cchhhheeeeecccccc-cCCceEEEe
Confidence            5899999 799999999999999996 9999998877666555667766553 22234444455543322 233578888


Q ss_pred             CCCHH-HHHHHHHH
Q 048013          176 AGFNK-TMSTALSA  188 (216)
Q Consensus       176 ~g~~~-~~~~~~~~  188 (216)
                      +.... ..+...+.
T Consensus        87 ~Svk~~~~~~~~~~  100 (152)
T d2pv7a2          87 TSVKREPLAKMLEV  100 (152)
T ss_dssp             CSCCHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHH
Confidence            87633 33444333

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=96.19  E-value=0.013  Score=44.01  Aligned_cols=97  Identities=16%  Similarity=0.242  Sum_probs=64.4

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHcC
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      ++.++.+||-+|+|. |..+..+++..+. .+|+++|.+++.++.+++    .+....+.. .   +.    .++  ...
T Consensus        24 ~~~~~~~ILDiGcG~-G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~-~---d~----~~~--~~~   92 (281)
T d2gh1a1          24 KITKPVHIVDYGCGY-GYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLE-G---DA----TEI--ELN   92 (281)
T ss_dssp             CCCSCCEEEEETCTT-THHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEE-S---CT----TTC--CCS
T ss_pred             ccCCcCEEEEecCcC-CHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccc-c---cc----ccc--ccc
Confidence            567888999999874 7777888876542 269999999988777654    333222211 1   11    111  123


Q ss_pred             CCccEEEEcCC-----C-HHHHHHHHHHhhcCCEEEEec
Q 048013          167 TGIDVSFDCAG-----F-NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       167 ~~~d~vi~~~g-----~-~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ..||+|+..-.     + ...++.+.+.|+|+|++++.-
T Consensus        93 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1          93 DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence            46999987532     2 356788999999999988654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.17  E-value=0.1  Score=35.88  Aligned_cols=42  Identities=17%  Similarity=0.169  Sum_probs=36.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLG  140 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g  140 (216)
                      +|-|+|.|.+|...+..+...|++ |.+.++++++.+.+.+.+
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~-V~~~dr~~~~~~~l~~~~   44 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFK-VAVFNRTYSKSEEFMKAN   44 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCC-EEEECSSHHHHHHHHHHT
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHcC
Confidence            478899999999999999999996 999999999988775543

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=96.14  E-value=0.063  Score=36.23  Aligned_cols=98  Identities=20%  Similarity=0.276  Sum_probs=65.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHc--CCCeEEEEcCCh--HH-HHHHHHcCCCEEEeCCCCcccHHHHHHH---------
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAF--GAPRIVIVDVDD--YR-LSVAKKLGADNIVKVSTNLQDIAEEVEK---------  160 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~--g~~~vv~~~~~~--~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~---------  160 (216)
                      .++|.|.|+ |.+|..+.++.+..  .+ +|+++....  ++ .+.+++|.+..+...+...  . +.+..         
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~--~-~~l~~~~~~~~~~v   77 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRY-QVIALTANRNVKDLADAAKRTNAKRAVIADPSL--Y-NDLKEALAGSSVEA   77 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGE-EEEEEEESSCHHHHHHHHHHTTCSEEEESCGGG--H-HHHHHHTTTCSSEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCc-EEEEEEeCCCHHHHHHHHHhhccccceeccHHH--H-HHHHHHhhhccccc
Confidence            378999997 99999999999875  35 466664443  33 3456789998876643211  1 11111         


Q ss_pred             ------HHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEE
Q 048013          161 ------IQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCL  197 (216)
Q Consensus       161 ------~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~  197 (216)
                            +.+.....+|+++.++.+...+...+.+++.+-++.+
T Consensus        78 ~~g~~~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~iaL  120 (150)
T d1r0ka2          78 AAGADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVAL  120 (150)
T ss_dssp             EESHHHHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTTSEEEE
T ss_pred             ccCccchheecccccceeeeecCchhHHHHHHHHHhcCCEEEE
Confidence                  1111245689999998887778888888888766543

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.14  E-value=0.01  Score=43.65  Aligned_cols=69  Identities=26%  Similarity=0.383  Sum_probs=43.0

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEc
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC  175 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  175 (216)
                      +.|||+|+ +++|.++++.+...|++ |+.+++++++.          .-+.. ..........+........+|.++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~-V~~~~~~~~~~----------~~d~~-~~~~~~~~~~~~~~~~~~~id~lv~~   69 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQ-IVGIDIRDAEV----------IADLS-TAEGRKQAIADVLAKCSKGMDGLVLC   69 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSSSSE----------ECCTT-SHHHHHHHHHHHHTTCTTCCSEEEEC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECChHHH----------HHHhc-CHHHHHHHHHHHHHHhCCCCcEEEEc
Confidence            45788885 89999999999999995 88888875321          11111 11111222222222234568999988


Q ss_pred             CC
Q 048013          176 AG  177 (216)
Q Consensus       176 ~g  177 (216)
                      .+
T Consensus        70 Ag   71 (257)
T d1fjha_          70 AG   71 (257)
T ss_dssp             CC
T ss_pred             CC
Confidence            76

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=96.13  E-value=0.0044  Score=43.89  Aligned_cols=41  Identities=22%  Similarity=0.258  Sum_probs=33.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA  136 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~  136 (216)
                      .+.++.|+|.|.+|..+++.++.+|.+ |+..++........
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~~~~~~~~   83 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDVH-LHYTDRHRLPESVE   83 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCE-EEEECSSCCCHHHH
T ss_pred             cccceeeccccccchhhhhhhhccCce-EEEEeecccccccc
Confidence            578999999999999999999999995 89998764433333

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.09  E-value=0.037  Score=37.71  Aligned_cols=94  Identities=21%  Similarity=0.310  Sum_probs=55.5

Q ss_pred             CEEEEEcCCHHHH-HHHHHHHHcCCCeEEEE-cCChH--HHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           97 TNVLIMGSGPIGL-VTMLAARAFGAPRIVIV-DVDDY--RLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        97 ~~vlv~Gag~~G~-~~i~~a~~~g~~~vv~~-~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      -++.|+|+|.+|. ..+++++....-.++.+ +++.+  ...++++++.....      .+. +.+.+.  ....++|+|
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~------~~~-d~l~~~--~~~~~iDiV   75 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY------AGV-EGLIKL--PEFADIDFV   75 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES------SHH-HHHHHS--GGGGGEEEE
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccc------cce-eeeeec--ccccccCEE
Confidence            3688999999986 56778776543334444 55543  45677888877431      122 122211  112469999


Q ss_pred             EEcCCCHHHHHHH--HHHhhcCCEEEEec
Q 048013          173 FDCAGFNKTMSTA--LSATRAGGKVCLVG  199 (216)
Q Consensus       173 i~~~g~~~~~~~~--~~~l~~~G~~v~~g  199 (216)
                      |.++......+..  .+.++.|-.++...
T Consensus        76 f~ATpag~h~~~~~~~~aa~~G~~VID~s  104 (157)
T d1nvmb1          76 FDATSASAHVQNEALLRQAKPGIRLIDLT  104 (157)
T ss_dssp             EECSCHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             EEcCCchhHHHhHHHHHHHHcCCEEEEcc
Confidence            9998864444433  34455555666665

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.1  Score=34.99  Aligned_cols=96  Identities=11%  Similarity=0.051  Sum_probs=59.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHH-HHHHH---cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccE
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRL-SVAKK---LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~-~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      -++++|.|.|.+|..+++.+...|.+ +++++.++++. +.+++   .+...+ .-+..+   .+.+++.   .-...|.
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~-v~vId~d~~~~~~~~~~~~~~~~~vi-~Gd~~d---~~~L~~a---~i~~a~~   74 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQN-VTVISNLPEDDIKQLEQRLGDNADVI-PGDSND---SSVLKKA---GIDRCRA   74 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHCTTCEEE-ESCTTS---HHHHHHH---TTTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCC-EEEEeccchhHHHHHHHhhcCCcEEE-EccCcc---hHHHHHh---ccccCCE
Confidence            35789999999999999999999996 88888876543 33333   344333 222222   2233332   3356899


Q ss_pred             EEEcCCCHHHH---HHHHHHhhcCCEEEEec
Q 048013          172 SFDCAGFNKTM---STALSATRAGGKVCLVG  199 (216)
Q Consensus       172 vi~~~g~~~~~---~~~~~~l~~~G~~v~~g  199 (216)
                      ++-++++....   -...+.+.|.-+++..-
T Consensus        75 vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~  105 (153)
T d1id1a_          75 ILALSDNDADNAFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             EEECSSCHHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred             EEEccccHHHHHHHHHHHHHhCCCCceEEEE
Confidence            99999874322   23344456666666543

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.08  E-value=0.01  Score=42.34  Aligned_cols=85  Identities=20%  Similarity=0.192  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .+++|.|+|.|.+|..+++.++.+|++ |++.++...+.       ....+.    ..+.    .++.    ...|++.-
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~~~~~-------~~~~~~----~~~l----~~l~----~~~D~v~~  103 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDPYPMKG-------DHPDFD----YVSL----EDLF----KQSDVIDL  103 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCSS-------CCTTCE----ECCH----HHHH----HHCSEEEE
T ss_pred             cceeeeeeeccccccccccccccccee-eeccCCccchh-------hhcchh----HHHH----HHHH----Hhccccee
Confidence            468999999999999999999999995 89988753321       000000    0122    2221    12677766


Q ss_pred             cCCCHHH-----HHHHHHHhhcCCEEEEec
Q 048013          175 CAGFNKT-----MSTALSATRAGGKVCLVG  199 (216)
Q Consensus       175 ~~g~~~~-----~~~~~~~l~~~G~~v~~g  199 (216)
                      ++...+.     -...++.|+++..++..|
T Consensus       104 ~~plt~~T~~li~~~~l~~mk~~a~lIN~a  133 (199)
T d1dxya1         104 HVPGIEQNTHIINEAAFNLMKPGAIVINTA  133 (199)
T ss_dssp             CCCCCGGGTTSBCHHHHHHSCTTEEEEECS
T ss_pred             eecccccccccccHHHhhccCCceEEEecc
Confidence            6553111     156677778887777776

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=96.07  E-value=0.002  Score=43.97  Aligned_cols=83  Identities=10%  Similarity=-0.001  Sum_probs=49.6

Q ss_pred             EEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCH
Q 048013          100 LIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFN  179 (216)
Q Consensus       100 lv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~  179 (216)
                      -++|+|.||..+++.++. +.....+.+|+.++.+.+.+.+.....+..    +           .-...|+||-|+.+ 
T Consensus         3 gfIG~G~mg~~l~~~L~~-~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~----~-----------~~~~~DiVil~v~d-   65 (153)
T d2i76a2           3 NFVGTGTLTRFFLECLKD-RYEIGYILSRSIDRARNLAEVYGGKAATLE----K-----------HPELNGVVFVIVPD-   65 (153)
T ss_dssp             EEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSC----C-----------CCC---CEEECSCT-
T ss_pred             EEEeCcHHHHHHHHHHHh-CCCEEEEEeCChhhhcchhhcccccccchh----h-----------hhccCcEEEEeccc-
Confidence            467999999998887765 443345788999998877665443222211    1           12357899999987 


Q ss_pred             HHHHHHHHHhhcCC-EEEEec
Q 048013          180 KTMSTALSATRAGG-KVCLVG  199 (216)
Q Consensus       180 ~~~~~~~~~l~~~G-~~v~~g  199 (216)
                      +.+..++..++..+ .++.++
T Consensus        66 ~~i~~v~~~l~~~~~ivi~~s   86 (153)
T d2i76a2          66 RYIKTVANHLNLGDAVLVHCS   86 (153)
T ss_dssp             TTHHHHHTTTCCSSCCEEECC
T ss_pred             hhhhHHHhhhcccceeeeecc
Confidence            55667777776444 444444

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.07  E-value=0.0033  Score=44.24  Aligned_cols=35  Identities=17%  Similarity=0.416  Sum_probs=30.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      +++|+|+|+|+.|+.++..|...|++.|+++++++
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecC
Confidence            57899999999999999999999985477787765

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=96.05  E-value=0.0033  Score=46.52  Aligned_cols=97  Identities=20%  Similarity=0.211  Sum_probs=60.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCC-EEEeCCCCcccHHHHHHHHHHHcCC
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGAD-NIVKVSTNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~  167 (216)
                      ++++++||-+|+|. |..+..+++. |...|+++|.+++.++.+++    .+.. .+.....   |..    ......+.
T Consensus        22 ~~~~~~VLDlGCG~-G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~---D~~----~~~~~~~~   92 (252)
T d1ri5a_          22 TKRGDSVLDLGCGK-GGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQ---DSY----GRHMDLGK   92 (252)
T ss_dssp             CCTTCEEEEETCTT-TTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEES---CTT----TSCCCCSS
T ss_pred             CCCcCEEEEecccC-cHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEc---chh----hhcccccc
Confidence            57899999999875 5556677664 55469999999998887754    3332 2211111   100    00001245


Q ss_pred             CccEEEEcCCC------H----HHHHHHHHHhhcCCEEEEe
Q 048013          168 GIDVSFDCAGF------N----KTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       168 ~~d~vi~~~g~------~----~~~~~~~~~l~~~G~~v~~  198 (216)
                      .||+|+..-.-      .    ..++.+.+.|+|+|+++..
T Consensus        93 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          93 EFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             CEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            79999875432      1    3456677889999998753

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.04  E-value=0.016  Score=43.59  Aligned_cols=37  Identities=19%  Similarity=0.118  Sum_probs=31.2

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCChHH
Q 048013           95 PETNVLIMGS-G--PIGLVTMLAARAFGAPRIVIVDVDDYR  132 (216)
Q Consensus        95 ~~~~vlv~Ga-g--~~G~~~i~~a~~~g~~~vv~~~~~~~~  132 (216)
                      +|+++||+|+ |  ++|.++++.+...|++ |++.++++..
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga~-Vvi~~~~~~~   46 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAE-ILVGTWVPAL   46 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEEEHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEeCchhh
Confidence            6899999996 4  7999999999999995 8888776543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=96.03  E-value=0.018  Score=42.63  Aligned_cols=103  Identities=16%  Similarity=0.036  Sum_probs=66.6

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-cCCCEEEeCCCCcccHHHHHHHHHHHcC
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-LGADNIVKVSTNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      ++.....++.+||-+|+|. |..+..++..... .|.+++.+++-++.+++ +.......+..  .+    ++++. ...
T Consensus        86 l~~l~~~~~~~vLD~GcG~-G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~--~d----~~~~~-~~~  156 (254)
T d1xtpa_          86 IASLPGHGTSRALDCGAGI-GRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFIL--AS----METAT-LPP  156 (254)
T ss_dssp             HHTSTTCCCSEEEEETCTT-THHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEE--SC----GGGCC-CCS
T ss_pred             HhhCCCCCCCeEEEecccC-ChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEE--cc----ccccc-cCC
Confidence            3445556788999999875 7788888776554 69999999998888865 33222222111  11    11111 124


Q ss_pred             CCccEEEEcCCC-----H---HHHHHHHHHhhcCCEEEEec
Q 048013          167 TGIDVSFDCAGF-----N---KTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       167 ~~~d~vi~~~g~-----~---~~~~~~~~~l~~~G~~v~~g  199 (216)
                      ..||+|+..-.-     +   ..++.+.+.|+|+|.+++.-
T Consensus       157 ~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEe
Confidence            579998874431     2   34678889999999988753

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=95.97  E-value=0.0072  Score=46.59  Aligned_cols=44  Identities=14%  Similarity=0.093  Sum_probs=36.5

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH
Q 048013           92 NIGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA  136 (216)
Q Consensus        92 ~~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~  136 (216)
                      -+++|++|||+|+ |-+|..+++.+...|++ |+++.++.++...+
T Consensus         7 ~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~-V~~~vR~~~~~~~~   51 (342)
T d1y1pa1           7 VLPEGSLVLVTGANGFVASHVVEQLLEHGYK-VRGTARSASKLANL   51 (342)
T ss_dssp             SSCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHH
T ss_pred             CCCCcCEEEEECCCCHHHHHHHHHHHHCcCE-EEEEeCCchhHHHH
Confidence            3678999999996 88999999988888985 88888887765544

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.96  E-value=0.033  Score=38.86  Aligned_cols=99  Identities=18%  Similarity=0.112  Sum_probs=56.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC-CCeEEEE-cCChH-HHHHHHHcCCCEEEeCCCCcccHHH-------HHHHHHHHcCC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFG-APRIVIV-DVDDY-RLSVAKKLGADNIVKVSTNLQDIAE-------EVEKIQKAMGT  167 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~-~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~  167 (216)
                      +|.|.|.|-+|...++.+.... .+ ++++ +.+.. ....+...+....... +....+.+       .+.+.    -.
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~die-vVaInd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~v~g~~~~~----~~   76 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMK-LVGVAKTSPNYEAFIAHRRGIRIYVPQ-QSIKKFEESGIPVAGTVEDL----IK   76 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEE-EEEEECSSCSHHHHHHHHTTCCEECCG-GGHHHHHTTTCCCCCCHHHH----HH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCE-EEEEECCCCcHHHHHhcccCcceeccC-ccceeccccceecCCchhhh----hh
Confidence            5789999999999999988653 54 5554 44332 3333444443322111 00000000       01111    12


Q ss_pred             CccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          168 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       168 ~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      ++|+|+||+|.....+.+-.+++.+-+.++.|..+
T Consensus        77 ~vDiViecTG~f~~~e~a~~hl~~G~KvIi~~~~~  111 (178)
T d1b7go1          77 TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGGEK  111 (178)
T ss_dssp             HCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSC
T ss_pred             cCCEEEECCCCcCCHHHHHHHHHcCCEEEEECCCC
Confidence            58999999998555566667777766777765433

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.96  E-value=0.0054  Score=39.55  Aligned_cols=35  Identities=26%  Similarity=0.498  Sum_probs=30.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChH
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDY  131 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~  131 (216)
                      ..+|.|+|+|.+|.+.++.|+.+|++ +++.|.+++
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~-v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVE-VIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCE-EEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCE-EEEEcCCCC
Confidence            35699999999999999999999995 888887764

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.0026  Score=38.26  Aligned_cols=34  Identities=24%  Similarity=0.426  Sum_probs=29.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChH
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDY  131 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~  131 (216)
                      ++|.|+|+|.+|.+.++.++.+|++ +.+.+.+++
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~-v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIA-VWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEE-EEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCE-EEEEcCCCC
Confidence            4789999999999999999999996 888876643

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.90  E-value=0.0053  Score=47.35  Aligned_cols=95  Identities=20%  Similarity=0.261  Sum_probs=55.1

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHH---HHHHHHcCCC-EEEeCCCCcccHHHHHHHHHHHcCC
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYR---LSVAKKLGAD-NIVKVSTNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~---~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~  167 (216)
                      ...++++||.+|+|. |.+++.+++ .|++.|++++.++.-   .+..++.+.. .+..+.....+       + .....
T Consensus        35 ~~~~~~~VLDlGcGt-G~ls~~aa~-~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~-------l-~~~~~  104 (328)
T d1g6q1_          35 DLFKDKIVLDVGCGT-GILSMFAAK-HGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLED-------V-HLPFP  104 (328)
T ss_dssp             HHHTTCEEEEETCTT-SHHHHHHHH-TCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTT-------S-CCSSS
T ss_pred             ccCCcCEEEEeCCCC-CHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhh-------c-cCccc
Confidence            346789999999874 666654554 787789999988632   2223444433 22221111111       1 01245


Q ss_pred             CccEEEEcCCC---------HHHHHHHHHHhhcCCEEE
Q 048013          168 GIDVSFDCAGF---------NKTMSTALSATRAGGKVC  196 (216)
Q Consensus       168 ~~d~vi~~~g~---------~~~~~~~~~~l~~~G~~v  196 (216)
                      .+|+|+...-.         ...+...-+.|+|+|+++
T Consensus       105 ~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         105 KVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            79998763321         133455557899999885

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.27  Score=37.80  Aligned_cols=111  Identities=20%  Similarity=0.305  Sum_probs=70.4

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE--cCChHHHHHHHHcCCCEEEeCCC-----------------
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIV--DVDDYRLSVAKKLGADNIVKVST-----------------  149 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~--~~~~~~~~~~~~~g~~~~~~~~~-----------------  149 (216)
                      +...+++.+.|+...+|+.|.+++..|+.+|.+.++++  ..+++|.+.++.+|++.+.....                 
T Consensus        90 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~~~  169 (355)
T d1jbqa_          90 RDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLK  169 (355)
T ss_dssp             HHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHHHH
T ss_pred             HcCCcccCceEEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEEEecccccchhhhhhhhHHHHHH
Confidence            33456777777766789999999999999999755555  33457888899999986542100                 


Q ss_pred             -------------CcccHH----HHHHHHHHHcCCCccEEEEcCCCHHHHH---HHHHHhhcCCEEEEec
Q 048013          150 -------------NLQDIA----EEVEKIQKAMGTGIDVSFDCAGFNKTMS---TALSATRAGGKVCLVG  199 (216)
Q Consensus       150 -------------~~~~~~----~~~~~~~~~~~~~~d~vi~~~g~~~~~~---~~~~~l~~~G~~v~~g  199 (216)
                                   ...+..    ....++.+..+..+|.++.++|+-..+.   ..++...++-+++.+-
T Consensus       170 ~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~ve  239 (355)
T d1jbqa_         170 NEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVD  239 (355)
T ss_dssp             HHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             HhccccccccccCcccchhhhcccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCcceEEeec
Confidence                         000111    1122343344556899999999744443   3344455677777654

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=95.77  E-value=0.022  Score=41.46  Aligned_cols=48  Identities=27%  Similarity=0.279  Sum_probs=40.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH-cCCC
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK-LGAD  142 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~-~g~~  142 (216)
                      -.+++|+|.|.|.+|..+++++...|++ +++++.+..+.+.+.. .+..
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Gak-vv~~d~~~~~~~~~~~~~g~~   85 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGAK-LVVTDVNKAAVSAAVAEEGAD   85 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHHCCE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCE-EEeecccHHHHHHHHHhcCCc
Confidence            5789999999999999999999999995 9999999888776543 4543

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=95.72  E-value=0.024  Score=42.95  Aligned_cols=75  Identities=23%  Similarity=0.239  Sum_probs=44.5

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC--h---HHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccE
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVD--D---YRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDV  171 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~--~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  171 (216)
                      +|||+|+ |-+|..+++.+...|++ |++++.-  .   ++.+.++..+--..+.-+-.+.+   .+.++.  .+.++|+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~-V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~---~l~~~~--~~~~~d~   75 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGID-LIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKN---DVTRLI--TKYMPDS   75 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHH---HHHHHH--HHHCCSE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCE-EEEEECCCcccchhHHHHhhccCCcEEEEcccCCHH---HHHHHH--HhcCCce
Confidence            6999996 99999999999888985 8887631  1   22333443433333332222111   222221  1236899


Q ss_pred             EEEcCCC
Q 048013          172 SFDCAGF  178 (216)
Q Consensus       172 vi~~~g~  178 (216)
                      ||.+++.
T Consensus        76 Vih~aa~   82 (338)
T d1orra_          76 CFHLAGQ   82 (338)
T ss_dssp             EEECCCC
T ss_pred             EEeeccc
Confidence            9998864

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=95.70  E-value=0.066  Score=36.89  Aligned_cols=98  Identities=23%  Similarity=0.272  Sum_probs=56.0

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----HcCCCE-EEeCCCCcccHHHHHHHHHHHcC
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KLGADN-IVKVSTNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      .+..+.+||-.++|. |...+.++ ..|++ ++.+|.+++..+.++    .++... +...     +....+.. ....+
T Consensus        38 ~~~~g~~vLDl~~G~-G~~~i~a~-~~ga~-vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~-----~~d~~~~~-~~~~~  108 (171)
T d1ws6a1          38 RYPRRGRFLDPFAGS-GAVGLEAA-SEGWE-AVLVEKDPEAVRLLKENVRRTGLGARVVAL-----PVEVFLPE-AKAQG  108 (171)
T ss_dssp             HCTTCCEEEEETCSS-CHHHHHHH-HTTCE-EEEECCCHHHHHHHHHHHHHHTCCCEEECS-----CHHHHHHH-HHHTT
T ss_pred             cccCCCeEEEecccc-chhhhhhh-hccch-hhhcccCHHHHhhhhHHHHhhccccceeee-----ehhccccc-ccccC
Confidence            467888999887542 33334433 46885 889999998877664    356643 3321     11111211 12245


Q ss_pred             CCccEEEEcC----CCHHHHHHHHH--HhhcCCEEEEe
Q 048013          167 TGIDVSFDCA----GFNKTMSTALS--ATRAGGKVCLV  198 (216)
Q Consensus       167 ~~~d~vi~~~----g~~~~~~~~~~--~l~~~G~~v~~  198 (216)
                      ..||+||-..    +-...+...+.  +++++|.+++-
T Consensus       109 ~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1         109 ERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             CCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             CccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence            6799998533    22234444433  47888877643

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.69  E-value=0.041  Score=39.19  Aligned_cols=97  Identities=18%  Similarity=0.126  Sum_probs=65.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      ....+|-+|+|. |..++.+|+...-..+++++.++.....+    ++.+..++..+..+..++.+   .   .....+|
T Consensus        31 ~~plvLdIGcG~-G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~---~---~~~~~~~  103 (204)
T d1yzha1          31 DNPIHVEVGSGK-GAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD---Y---FEDGEID  103 (204)
T ss_dssp             CCCEEEEESCTT-SHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG---T---SCTTCCS
T ss_pred             CCCeEEEEeccC-CHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhh---h---ccCCcee
Confidence            345678889886 88999999987444799999998765543    55677655433222222211   1   1234678


Q ss_pred             EEEEcCCC--------------HHHHHHHHHHhhcCCEEEEe
Q 048013          171 VSFDCAGF--------------NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       171 ~vi~~~g~--------------~~~~~~~~~~l~~~G~~v~~  198 (216)
                      .++-....              +..++.+.+.|+|+|.+.+.
T Consensus       104 ~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~  145 (204)
T d1yzha1         104 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  145 (204)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             hhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            88776654              36778899999999998764

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.69  E-value=0.043  Score=38.18  Aligned_cols=84  Identities=14%  Similarity=0.040  Sum_probs=53.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCeEE-EEcCChHHHHH-HHHcCCCEE-EeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           98 NVLIMGSGPIGLVTMLAARAF-GAPRIV-IVDVDDYRLSV-AKKLGADNI-VKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~-g~~~vv-~~~~~~~~~~~-~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      ++.|+|+|.+|...++.++.. +++ ++ +.++++++.+. .++++.... ..+    .++.+.+      ....+|+|+
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~-i~ai~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~ll------~~~~iD~v~   71 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNAT-ISGVASRSLEKAKAFATANNYPESTKIH----GSYESLL------EDPEIDALY   71 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEE-EEEEECSSHHHHHHHHHHTTCCTTCEEE----SSHHHHH------HCTTCCEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCE-EEEEEeCCccccccchhccccccceeec----CcHHHhh------hccccceee
Confidence            578899999998888888776 554 55 45888777554 456664321 111    2333222      134689999


Q ss_pred             EcCCCHHHHHHHHHHhhcC
Q 048013          174 DCAGFNKTMSTALSATRAG  192 (216)
Q Consensus       174 ~~~g~~~~~~~~~~~l~~~  192 (216)
                      -++......+.+..++..+
T Consensus        72 I~tp~~~h~~~~~~~l~~g   90 (184)
T d1ydwa1          72 VPLPTSLHVEWAIKAAEKG   90 (184)
T ss_dssp             ECCCGGGHHHHHHHHHTTT
T ss_pred             ecccchhhcchhhhhhhcc
Confidence            8888866666666666654

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.69  E-value=0.0096  Score=41.45  Aligned_cols=38  Identities=21%  Similarity=0.354  Sum_probs=32.4

Q ss_pred             EEEEE-cCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH
Q 048013           98 NVLIM-GSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA  136 (216)
Q Consensus        98 ~vlv~-Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~  136 (216)
                      +|.|+ |+|++|.++++.+...|++ |++.+|++++.+.+
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~-V~l~~R~~e~~~~l   40 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHE-IVVGSRREEKAEAK   40 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHH
Confidence            57788 5799999999999999995 88999999886654

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.018  Score=41.37  Aligned_cols=98  Identities=16%  Similarity=0.113  Sum_probs=63.0

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHc----CCCEEEeCCCCcccHHHHHHHHHHHcCC
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKL----GADNIVKVSTNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (216)
                      ...++.+||-+|+|. |..+..+++..+. .|+++|.+++-++.+++.    +...+.....   ++    .++. ....
T Consensus        57 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~---d~----~~~~-~~~~  126 (222)
T d2ex4a1          57 NKTGTSCALDCGAGI-GRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCC---GL----QDFT-PEPD  126 (222)
T ss_dssp             -CCCCSEEEEETCTT-THHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEEC---CG----GGCC-CCSS
T ss_pred             CCCCCCEEEEeccCC-CHhhHHHHHhcCC-EEEEeecCHHHhhccccccccccccccccccc---cc----cccc-cccc
Confidence            456778999999875 7677777665554 699999999988887653    2222211111   11    1111 1245


Q ss_pred             CccEEEEcCC-----CH---HHHHHHHHHhhcCCEEEEec
Q 048013          168 GIDVSFDCAG-----FN---KTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       168 ~~d~vi~~~g-----~~---~~~~~~~~~l~~~G~~v~~g  199 (216)
                      .+|+|+..-.     .+   ..++.+.+.|+|+|.+++.-
T Consensus       127 ~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~  166 (222)
T d2ex4a1         127 SYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD  166 (222)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEE
Confidence            7899887332     22   36678889999999998764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.54  E-value=0.032  Score=37.63  Aligned_cols=35  Identities=17%  Similarity=0.112  Sum_probs=28.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHH
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRL  133 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~  133 (216)
                      +|-|+|.|.+|+..+.-++..|.+ +++.+++..+.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~-v~~~~~~~~~~   36 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVE-VVTSLEGRSPS   36 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCE-EEECCTTCCHH
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCe-EEEEcCchhHH
Confidence            578899999999999999999985 77776665443

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.53  E-value=0.0025  Score=45.28  Aligned_cols=83  Identities=12%  Similarity=0.258  Sum_probs=53.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEE----EeCCCC---cccHHHHHHHHHHHcCCCc
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNI----VKVSTN---LQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~  169 (216)
                      .+|.|+|+|..|.+.+.++...|. .|...+++++..+.+.+-+....    +.....   ..+.    .+.    -.+.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l----~~a----~~~a   78 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDV----EKA----YNGA   78 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCH----HHH----HTTC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHHhhcccccccccccccccccccchhh----hhc----cCCC
Confidence            369999999999999988887777 48999999988887754321100    000000   0122    221    1358


Q ss_pred             cEEEEcCCCHHHHHHHHHHh
Q 048013          170 DVSFDCAGFNKTMSTALSAT  189 (216)
Q Consensus       170 d~vi~~~g~~~~~~~~~~~l  189 (216)
                      |++|-+++. ..++..++.+
T Consensus        79 d~iiiavPs-~~~~~~~~~~   97 (189)
T d1n1ea2          79 EIILFVIPT-QFLRGFFEKS   97 (189)
T ss_dssp             SCEEECSCH-HHHHHHHHHH
T ss_pred             CEEEEcCcH-HHHHHHHHHH
Confidence            999999987 5555555443

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.52  E-value=0.057  Score=38.21  Aligned_cols=73  Identities=19%  Similarity=0.258  Sum_probs=47.6

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCC-EEEeCCCCcccHHHHHHHHHHHcCC
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGAD-NIVKVSTNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~  167 (216)
                      ...+ -.|++||-.|+|. |.+++. +...|+..|+.+|.+++..+.+++.-.. .++.     .|+    .+    ..+
T Consensus        43 ~~~d-l~Gk~VLDlGcGt-G~l~i~-a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~-----~D~----~~----l~~  106 (197)
T d1ne2a_          43 NDGN-IGGRSVIDAGTGN-GILACG-SYLLGAESVTAFDIDPDAIETAKRNCGGVNFMV-----ADV----SE----ISG  106 (197)
T ss_dssp             HHTS-SBTSEEEEETCTT-CHHHHH-HHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEE-----CCG----GG----CCC
T ss_pred             HcCC-CCCCEEEEeCCCC-cHHHHH-HHHcCCCcccccccCHHHHHHHHHccccccEEE-----Eeh----hh----cCC
Confidence            3344 4689999999864 555554 4447877899999999998888774332 3332     121    11    245


Q ss_pred             CccEEEEcCC
Q 048013          168 GIDVSFDCAG  177 (216)
Q Consensus       168 ~~d~vi~~~g  177 (216)
                      .||+||.+.+
T Consensus       107 ~fD~Vi~NPP  116 (197)
T d1ne2a_         107 KYDTWIMNPP  116 (197)
T ss_dssp             CEEEEEECCC
T ss_pred             cceEEEeCcc
Confidence            7999987644

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=95.51  E-value=0.073  Score=36.66  Aligned_cols=101  Identities=21%  Similarity=0.259  Sum_probs=60.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEE-cC--ChHHHHHHHHcCCCE------E------EeCCC------CcccHHH
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIV-DV--DDYRLSVAKKLGADN------I------VKVST------NLQDIAE  156 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~-~~--~~~~~~~~~~~g~~~------~------~~~~~------~~~~~~~  156 (216)
                      +|.|.|.|-+|.++.+.+...+.. ++++ +.  +.+...++-++....      +      +.++.      ...+..+
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~-ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~~   80 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQ-VVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPEN   80 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCC-EEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCc-EEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChHH
Confidence            578999999999999999888886 5555 42  335555554432111      0      00000      0011110


Q ss_pred             HHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCC
Q 048013          157 EVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHRE  204 (216)
Q Consensus       157 ~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~  204 (216)
                       + .|   ...++|+|+||+|--...+.+...+..+.+-++++.+..+
T Consensus        81 -i-~W---~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~~d  123 (169)
T d1dssg1          81 -I-PW---SKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSAD  123 (169)
T ss_dssp             -C-CH---HHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCSS
T ss_pred             -C-Cc---cccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCCccc
Confidence             0 12   1237999999999755556777788877766777655443

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.49  E-value=0.014  Score=40.63  Aligned_cols=42  Identities=14%  Similarity=0.169  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA  136 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~  136 (216)
                      --++++|+|+|+|+++.+++..+...|  .+.++.|+.++.+.+
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL~~~~--~i~I~nR~~~ka~~l   56 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFELAKDN--NIIIANRTVEKAEAL   56 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSSHHHHHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHcccc--ceeeehhhhhHHHHH
Confidence            357889999999999998887775544  699999998876544

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=95.45  E-value=0.025  Score=38.80  Aligned_cols=81  Identities=14%  Similarity=0.182  Sum_probs=47.0

Q ss_pred             EEEEEcCCHHHHH-HHHHHHHc-CCCeEEEEcCChHHHHHH-HHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           98 NVLIMGSGPIGLV-TMLAARAF-GAPRIVIVDVDDYRLSVA-KKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        98 ~vlv~Gag~~G~~-~i~~a~~~-g~~~vv~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      ++.|+|+|.+|.- .+..++.. +. .+++++.++++.+.+ ++++....+.      ++.+    +.   ...+|+|+-
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~------~~~~----ll---~~~iD~V~I   68 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDI-ELVLCTRNPKVLGTLATRYRVSATCT------DYRD----VL---QYGVDAVMI   68 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTE-EEEEECSCHHHHHHHHHHTTCCCCCS------STTG----GG---GGCCSEEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHHhcccccccc------cHHH----hc---ccccceecc
Confidence            5788999999854 55566555 45 467788888776654 5577654321      1111    11   124677777


Q ss_pred             cCCCHHHHHHHHHHhhcC
Q 048013          175 CAGFNKTMSTALSATRAG  192 (216)
Q Consensus       175 ~~g~~~~~~~~~~~l~~~  192 (216)
                      ++......+.+..+++.+
T Consensus        69 ~tp~~~H~~~~~~al~~g   86 (167)
T d1xeaa1          69 HAATDVHSTLAAFFLHLG   86 (167)
T ss_dssp             CSCGGGHHHHHHHHHHTT
T ss_pred             cccccccccccccccccc
Confidence            766654444444444433

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.42  E-value=0.0088  Score=43.85  Aligned_cols=35  Identities=17%  Similarity=0.319  Sum_probs=30.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      ..++|+|+|+|+.|++++..+...|.+ |+++++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~-v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVD-VDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCC-EEEEeCCC
Confidence            457899999999999999999999995 99998753

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=95.42  E-value=0.03  Score=41.15  Aligned_cols=100  Identities=15%  Similarity=0.155  Sum_probs=61.0

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHH----HHHcCCCE-EEeCCCCcccHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSV----AKKLGADN-IVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~----~~~~g~~~-~~~~~~~~~~~~~~~~~~~~  163 (216)
                      +.....+.++||-+|+|. |..++.+++...--+++++|.. +..+.    +.+.+... +....   .|+.       +
T Consensus        74 ~~~d~~~~~~VLDvGcG~-G~~~~~la~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~rv~~~~---~D~~-------~  141 (253)
T d1tw3a2          74 AAYDWTNVRHVLDVGGGK-GGFAAAIARRAPHVSATVLEMA-GTVDTARSYLKDEGLSDRVDVVE---GDFF-------E  141 (253)
T ss_dssp             HHSCCTTCSEEEEETCTT-SHHHHHHHHHCTTCEEEEEECT-THHHHHHHHHHHTTCTTTEEEEE---CCTT-------S
T ss_pred             hhcCCccCCEEEEeCCCC-CHHHHHHHHhcceeEEEEccCH-HHHHHHHHHHHHhhcccchhhcc---ccch-------h
Confidence            445567788999999875 7888888988743358888864 33333    33344321 21111   1110       0


Q ss_pred             HcCCCccEEEEcCC-----CH---HHHHHHHHHhhcCCEEEEecc
Q 048013          164 AMGTGIDVSFDCAG-----FN---KTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       164 ~~~~~~d~vi~~~g-----~~---~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      ....++|+|+-...     .+   ..++.+.+.|+|+|++++.-.
T Consensus       142 ~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         142 PLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hcccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence            12346899875322     22   346788999999999998754

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.41  E-value=0.19  Score=33.37  Aligned_cols=37  Identities=30%  Similarity=0.522  Sum_probs=30.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHH
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRL  133 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~  133 (216)
                      .+|.|+|+|.+|..++..+...+. +.++.+|.++++.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~   39 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERV   39 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence            468889999999998877777774 4799999998764

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.027  Score=43.11  Aligned_cols=30  Identities=33%  Similarity=0.482  Sum_probs=26.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV  128 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~  128 (216)
                      +|||+|+ |-+|..++..+...|.+ |+++++
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~-V~~~d~   32 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHD-VIILDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCE-EEEEEC
Confidence            5899996 99999999999999985 888764

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=95.28  E-value=0.02  Score=43.96  Aligned_cols=37  Identities=19%  Similarity=0.162  Sum_probs=32.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYR  132 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~  132 (216)
                      .+++|||+|+ |-+|..+++.+...|++ |++++++..+
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~-V~~~~r~~~~   44 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGAT-VKGYSLTAPT   44 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCCCc
Confidence            4799999996 99999999999999995 8899887654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.25  E-value=0.0091  Score=44.28  Aligned_cols=34  Identities=18%  Similarity=0.453  Sum_probs=29.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      +++|+|+|+|..|+.++..+...|.+ |+++++++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~-V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLN-VTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCE-EEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCC-EEEEeCCC
Confidence            57899999999999999999999995 99998653

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=95.24  E-value=0.24  Score=33.29  Aligned_cols=97  Identities=22%  Similarity=0.226  Sum_probs=63.7

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcC--CCeEEEEcCCh--HH-HHHHHHcCCCEEEeCCCCcccHHHHHHHH---------
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFG--APRIVIVDVDD--YR-LSVAKKLGADNIVKVSTNLQDIAEEVEKI---------  161 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g--~~~vv~~~~~~--~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---------  161 (216)
                      ++|.|.|+ |.+|..+..+.+...  + +|+......  +. .+.+.+|.+..+...++   ...+.+.+.         
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~---~~~~~l~~~l~~~~~~~~   77 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHF-RVVALVAGKNVTRMVEQCLEFSPRYAVMDDE---ASAKLLKTMLQQQGSRTE   77 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTE-EEEEEEESSCHHHHHHHHHHHCCSEEEESSH---HHHHHHHHHHHHTTCCCE
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCc-EEEEEEecCcHHHHHHHHHHHhhcccccccH---HHHHHHHHHhhhhccccc
Confidence            36889996 999999999999863  4 466554433  33 34567899988776432   211111111         


Q ss_pred             --------HH-HcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEE
Q 048013          162 --------QK-AMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCL  197 (216)
Q Consensus       162 --------~~-~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~  197 (216)
                              .+ ....++|.|+.++.+...+...+..++.+-++.+
T Consensus        78 ~~~g~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~iaL  122 (151)
T d1q0qa2          78 VLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILL  122 (151)
T ss_dssp             EEESHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEE
T ss_pred             cccChHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcCCeEEE
Confidence                    11 1234799999999987888888888887766543

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.19  E-value=0.051  Score=41.57  Aligned_cols=31  Identities=32%  Similarity=0.379  Sum_probs=26.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV  128 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~  128 (216)
                      +.|||+|+ |-+|..++..+...|.+ |+++++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~-V~~~d~   33 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYD-CVVADN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCe-EEEEEC
Confidence            57899996 99999999999889985 888754

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.18  E-value=0.057  Score=36.23  Aligned_cols=33  Identities=21%  Similarity=0.513  Sum_probs=28.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVD  127 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~  127 (216)
                      -.+++|||+|+|.+|.--+..+...|++ |++++
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA~-VtVva   43 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGCK-LTLVS   43 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCE-EEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEe
Confidence            3689999999999999999999999996 66663

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.031  Score=39.33  Aligned_cols=35  Identities=23%  Similarity=0.394  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      .++++.|+|.|.+|..+++.++.+|++ |+..++..
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~~   77 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGMY-VYFYDIEN   77 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSC
T ss_pred             cceEEEEeecccchhhhhhhcccccce-Eeeccccc
Confidence            578999999999999999999999995 88888654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.12  E-value=0.033  Score=35.91  Aligned_cols=42  Identities=14%  Similarity=0.197  Sum_probs=34.9

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      ++.....++++++|+|+|.+|+=.+..++.+|.+ +..+.+.+
T Consensus        14 ~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~-vt~i~~~~   55 (121)
T d1mo9a2          14 VEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRR-TVMLVRTE   55 (121)
T ss_dssp             HHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSC
T ss_pred             HHHHhhCCCCEEEEECCCHHHHHHHHHHHhcchh-heEeeccc
Confidence            3555667889999999999999999999999985 77777654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.11  E-value=0.2  Score=33.33  Aligned_cols=94  Identities=18%  Similarity=0.250  Sum_probs=56.6

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHHHHcCC---CEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVAKKLGA---DNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      +|.|+|| |.+|..++.++...+. +.++.+|.++.+-+.++-.-.   ...... ....+..+.   +     ++.|+|
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~-~~~~~~~~~---~-----~~aDiv   72 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGY-LGPEQLPDC---L-----KGCDVV   72 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEE-ESGGGHHHH---H-----TTCSEE
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeE-EcCCChHHH---h-----CCCCEE
Confidence            6889996 9999999988888775 678899988765443322211   111111 111222221   1     469999


Q ss_pred             EEcCCCH---------------HHHHHHHHHh---hcCCEEEEecc
Q 048013          173 FDCAGFN---------------KTMSTALSAT---RAGGKVCLVGM  200 (216)
Q Consensus       173 i~~~g~~---------------~~~~~~~~~l---~~~G~~v~~g~  200 (216)
                      +-+.|.+               ..++...+.+   .|++.++.++.
T Consensus        73 Vitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN  118 (144)
T d1mlda1          73 VIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN  118 (144)
T ss_dssp             EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             EECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            9998852               1233333333   67888887764

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.10  E-value=0.11  Score=36.22  Aligned_cols=108  Identities=16%  Similarity=0.201  Sum_probs=67.4

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      +...++++..++-...|+=|+. ..+++. +. +|+++|++++.+..+++.-......+.....++.+.+...   .-..
T Consensus        12 ~~l~~~~g~~~vD~T~G~GGhs-~~iL~~-~~-~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~---~~~~   85 (182)
T d1wg8a2          12 DLLAVRPGGVYVDATLGGAGHA-RGILER-GG-RVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL---GVER   85 (182)
T ss_dssp             HHHTCCTTCEEEETTCTTSHHH-HHHHHT-TC-EEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT---TCSC
T ss_pred             HhcCCCCCCEEEEeCCCCcHHH-HHHhcc-cC-cEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHc---CCCc
Confidence            4456788887654323554553 444554 44 6999999999988887754443333333334444433332   3456


Q ss_pred             ccEEEEcCCCH---------------HHHHHHHHHhhcCCEEEEeccCC
Q 048013          169 IDVSFDCAGFN---------------KTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       169 ~d~vi~~~g~~---------------~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      +|.|+=-.|-.               ..+......++++|+++.+.+..
T Consensus        86 vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs  134 (182)
T d1wg8a2          86 VDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS  134 (182)
T ss_dssp             EEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred             cCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence            88877656642               24677888899999999887643

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.06  E-value=0.011  Score=43.09  Aligned_cols=36  Identities=28%  Similarity=0.446  Sum_probs=30.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHH
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYR  132 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~  132 (216)
                      ++++||+|+ +++|.++++.+...|++ |++++++++.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~-V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYR-VVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCccc
Confidence            478899996 89999999999999995 9999988654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.06  E-value=0.1  Score=40.42  Aligned_cols=31  Identities=29%  Similarity=0.442  Sum_probs=26.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVD  127 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~  127 (216)
                      |++|||+|+ |-+|..+++.+...|++ |+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~-V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYE-VCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEe
Confidence            578999996 99999999999999985 88887

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.02  E-value=0.084  Score=37.13  Aligned_cols=109  Identities=16%  Similarity=0.142  Sum_probs=65.5

Q ss_pred             HHHcCCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHH
Q 048013           88 CRRANIGPETNVLIMGSGPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        88 l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~  162 (216)
                      ++...++++..++-.++|.=|+. -.+++.. +. +++++|++++.++.+++    ++... ..+.....++...+..  
T Consensus        16 i~~l~~~~~~~~lD~t~G~Gghs-~~il~~~~~~-~vi~~D~d~~~l~~a~~~l~~~~~r~-~~~~~~f~~~~~~~~~--   90 (192)
T d1m6ya2          16 IEFLKPEDEKIILDCTVGEGGHS-RAILEHCPGC-RIIGIDVDSEVLRIAEEKLKEFSDRV-SLFKVSYREADFLLKT--   90 (192)
T ss_dssp             HHHHCCCTTCEEEETTCTTSHHH-HHHHHHCTTC-EEEEEESCHHHHHHHHHHTGGGTTTE-EEEECCGGGHHHHHHH--
T ss_pred             HHhhCCCCCCEEEEecCCCcHHH-HHHHhcCCCC-eEEEeechHHHHHHHHHhhccccccc-cchhHHHhhHHHHHHH--
Confidence            34456788887776555543443 3444444 44 69999999998887755    33322 2222222333333333  


Q ss_pred             HHcCCCccEEEEcCCCH---------------HHHHHHHHHhhcCCEEEEeccCC
Q 048013          163 KAMGTGIDVSFDCAGFN---------------KTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~~---------------~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                       .....+|.|+=-.|-+               ..+..+.+.|+++|+++.+.+..
T Consensus        91 -~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2          91 -LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             -TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             -cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence             2346788876545531               34567777889999999887644

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=94.96  E-value=0.05  Score=41.62  Aligned_cols=37  Identities=16%  Similarity=0.178  Sum_probs=31.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHH
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYR  132 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~  132 (216)
                      .-++|+|+|+ |.+|..++..+...|++ |+++.|+..+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~-V~~l~R~~~~   39 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHH-VRAQVHSLKG   39 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCC-EEEEESCSCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCe-EEEEECCcch
Confidence            4578999996 99999999999999996 8888776554

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=94.96  E-value=0.044  Score=38.65  Aligned_cols=90  Identities=14%  Similarity=0.195  Sum_probs=58.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      +.++.+||-+|+|. |..+..+     . +++++|.+++..+.+++.+...... +.  ++.        ......||+|
T Consensus        34 ~~~~~~vLDiGcG~-G~~~~~~-----~-~~~giD~s~~~~~~a~~~~~~~~~~-d~--~~l--------~~~~~~fD~I   95 (208)
T d1vlma_          34 LLPEGRGVEIGVGT-GRFAVPL-----K-IKIGVEPSERMAEIARKRGVFVLKG-TA--ENL--------PLKDESFDFA   95 (208)
T ss_dssp             HCCSSCEEEETCTT-STTHHHH-----T-CCEEEESCHHHHHHHHHTTCEEEEC-BT--TBC--------CSCTTCEEEE
T ss_pred             hCCCCeEEEECCCC-ccccccc-----c-eEEEEeCChhhcccccccccccccc-cc--ccc--------cccccccccc
Confidence            35567899999864 5443333     2 3689999999999988765543221 11  111        0124569999


Q ss_pred             EEcCC-----C-HHHHHHHHHHhhcCCEEEEecc
Q 048013          173 FDCAG-----F-NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       173 i~~~g-----~-~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      +..-.     + ...++.+.+.|+|+|++++.-.
T Consensus        96 ~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~  129 (208)
T d1vlma_          96 LMVTTICFVDDPERALKEAYRILKKGGYLIVGIV  129 (208)
T ss_dssp             EEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccccccccchhhhhhcCCCCceEEEEec
Confidence            87433     2 3467889999999999987653

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.92  E-value=0.15  Score=32.99  Aligned_cols=94  Identities=13%  Similarity=0.121  Sum_probs=62.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      ++++|.|.|.+|..+++.++  +. .+++++.++++.+.++..|...+.- +..+   .+.+++.   .=..++.++-++
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~-~i~vi~~d~~~~~~~~~~~~~~i~G-d~~~---~~~L~~a---~i~~A~~vi~~~   70 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GS-EVFVLAEDENVRKKVLRSGANFVHG-DPTR---VSDLEKA---NVRGARAVIVNL   70 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GG-GEEEEESCTTHHHHHHHTTCEEEES-CTTS---HHHHHHT---TCTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHc--CC-CCEEEEcchHHHHHHHhcCcccccc-ccCC---HHHHHHh---hhhcCcEEEEec
Confidence            46888999999998877765  33 3777888998888888888765432 2222   2233332   335689999988


Q ss_pred             CCHHH---HHHHHHHhhcCCEEEEecc
Q 048013          177 GFNKT---MSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       177 g~~~~---~~~~~~~l~~~G~~v~~g~  200 (216)
                      .++..   .-...+.+.|..+++..-.
T Consensus        71 ~~d~~n~~~~~~~r~~~~~~~iia~~~   97 (129)
T d2fy8a1          71 ESDSETIHCILGIRKIDESVRIIAEAE   97 (129)
T ss_dssp             SSHHHHHHHHHHHHHHCSSSCEEEECS
T ss_pred             cchhhhHHHHHHHHHHCCCceEEEEEc
Confidence            87432   2345556777877766543

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=94.92  E-value=0.061  Score=38.37  Aligned_cols=94  Identities=17%  Similarity=0.211  Sum_probs=58.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHH----HHcCCCEEEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVA----KKLGADNIVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      -++++++.+|+|+ |.=.+-+|... .. .++.++++.+|...+    ++++...+..+..+.++.         .....
T Consensus        64 ~~~~~ilDiGsGa-G~PGi~laI~~p~~-~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~---------~~~~~  132 (207)
T d1jsxa_          64 LQGERFIDVGTGP-GLPGIPLSIVRPEA-HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEF---------PSEPP  132 (207)
T ss_dssp             CCSSEEEEETCTT-TTTHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTS---------CCCSC
T ss_pred             hcCCceeeeeccC-Cceeeehhhhcccc-eEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhh---------ccccc
Confidence            3567899898542 33333344443 34 699999999997766    447877554433333321         02346


Q ss_pred             ccEEEE-cCCC-HHHHHHHHHHhhcCCEEEEe
Q 048013          169 IDVSFD-CAGF-NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       169 ~d~vi~-~~g~-~~~~~~~~~~l~~~G~~v~~  198 (216)
                      ||+|+. +++. +..+..+.+.++++|+++.+
T Consensus       133 fD~V~sRA~~~~~~ll~~~~~~l~~~g~~~~~  164 (207)
T d1jsxa_         133 FDGVISRAFASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             EEEEECSCSSSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             cceehhhhhcCHHHHHHHHHHhcCCCcEEEEE
Confidence            898875 4444 34456677788999999877

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=94.92  E-value=0.21  Score=34.35  Aligned_cols=83  Identities=16%  Similarity=0.117  Sum_probs=51.2

Q ss_pred             EEEEEcCCHHHHH-HHHHHHHcCCC-eEE-EEcCChHHHHH-HHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           98 NVLIMGSGPIGLV-TMLAARAFGAP-RIV-IVDVDDYRLSV-AKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        98 ~vlv~Gag~~G~~-~i~~a~~~g~~-~vv-~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      ++.|+|+|.+|.- .+...+..+-. .++ +.++++++.+. .++++....+.      ++.+.+      ....+|+|+
T Consensus         5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~------~~~ell------~~~~id~v~   72 (181)
T d1zh8a1           5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFD------SYEELL------ESGLVDAVD   72 (181)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEES------CHHHHH------HSSCCSEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceee------eeeccc------cccccceee
Confidence            5788999999864 46666655422 344 55888777654 45677665432      333222      234689888


Q ss_pred             EcCCCHHHHHHHHHHhhcC
Q 048013          174 DCAGFNKTMSTALSATRAG  192 (216)
Q Consensus       174 ~~~g~~~~~~~~~~~l~~~  192 (216)
                      -++......+.+..++..+
T Consensus        73 I~tp~~~h~~~~~~al~~g   91 (181)
T d1zh8a1          73 LTLPVELNLPFIEKALRKG   91 (181)
T ss_dssp             ECCCGGGHHHHHHHHHHTT
T ss_pred             ccccccccccccccccccc
Confidence            8888755555555555544

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.90  E-value=0.025  Score=36.48  Aligned_cols=38  Identities=24%  Similarity=0.319  Sum_probs=32.5

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      .++..++++|+|+|.+|.=.+..+..+|.+ |.++.+.+
T Consensus        18 ~l~~p~~v~IiGgG~iG~E~A~~l~~~g~~-Vtlv~~~~   55 (117)
T d1onfa2          18 NIKESKKIGIVGSGYIAVELINVIKRLGID-SYIFARGN   55 (117)
T ss_dssp             TCCCCSEEEEECCSHHHHHHHHHHHTTTCE-EEEECSSS
T ss_pred             ccCCCCEEEEECCchHHHHHHHHHHhcccc-ceeeehhc
Confidence            456678999999999999999999999995 88887764

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.90  E-value=0.14  Score=34.27  Aligned_cols=95  Identities=15%  Similarity=0.156  Sum_probs=54.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----HcCCCE-EEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KLGADN-IVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      -.|.+||-.++|. |.+.+.++ ..|++.|+.++.+.+..+.++    .++... +..+.   .|..+.+.    .....
T Consensus        13 ~~g~~vlDl~~Gt-G~~~iea~-~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~---~D~~~~l~----~~~~~   83 (152)
T d2esra1          13 FNGGRVLDLFAGS-GGLAIEAV-SRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK---MEAERAID----CLTGR   83 (152)
T ss_dssp             CCSCEEEEETCTT-CHHHHHHH-HTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEEC---SCHHHHHH----HBCSC
T ss_pred             CCCCeEEEcCCcc-CHHHHHHH-HhCcceeeeehhchhhhhhhhhhhhhcccccchhhhc---cccccccc----ccccc
Confidence            3688999887542 33444443 468878999999988766553    356543 22222   24333332    24567


Q ss_pred             ccEEEEcCC-CHHHHHHHHH------HhhcCCEEEE
Q 048013          169 IDVSFDCAG-FNKTMSTALS------ATRAGGKVCL  197 (216)
Q Consensus       169 ~d~vi~~~g-~~~~~~~~~~------~l~~~G~~v~  197 (216)
                      +|+||--.+ ........+.      .|+++|.+++
T Consensus        84 fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iii  119 (152)
T d2esra1          84 FDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVC  119 (152)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             cceeEechhhccchHHHHHHHHHHCCCcCCCeEEEE
Confidence            999986543 2222233333      3567777664

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.82  E-value=0.081  Score=32.73  Aligned_cols=71  Identities=15%  Similarity=0.114  Sum_probs=48.4

Q ss_pred             CCCCCEEEEEcCCHHHHHH-HHHHHHcCCCeEEEEcCCh-HHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCcc
Q 048013           93 IGPETNVLIMGSGPIGLVT-MLAARAFGAPRIVIVDVDD-YRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~-i~~a~~~g~~~vv~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .+..+++.++|.|++|... +++++..|++ |...|... ...+.+++.|.......  ..++            -.+.|
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~-VsGSD~~~~~~~~~L~~~Gi~v~~g~--~~~~------------i~~~d   69 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQ-ISGSDIADGVVTQRLAQAGAKIYIGH--AEEH------------IEGAS   69 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCE-EEEEESCCSHHHHHHHHTTCEEEESC--CGGG------------GTTCS
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCE-EEEEeCCCChhhhHHHHCCCeEEECC--cccc------------CCCCC
Confidence            4567889999987778655 8999999995 99998864 34566777888643322  1111            13578


Q ss_pred             EEEEcCCC
Q 048013          171 VSFDCAGF  178 (216)
Q Consensus       171 ~vi~~~g~  178 (216)
                      .++-+.+-
T Consensus        70 ~vV~S~AI   77 (96)
T d1p3da1          70 VVVVSSAI   77 (96)
T ss_dssp             EEEECTTS
T ss_pred             EEEECCCc
Confidence            87766653

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.043  Score=41.82  Aligned_cols=74  Identities=18%  Similarity=0.053  Sum_probs=44.1

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCC-CCcccHHHHHHHHHHHcCCCccEEEEc
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDC  175 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~vi~~  175 (216)
                      +|||+|+ |-+|..+++.+...|...|+++++...+...+.+..--..+.-+ ....++.+...       .++|+||.+
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~-------~~~d~Vih~   74 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHV-------KKCDVVLPL   74 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHH-------HHCSEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHH-------hCCCccccc
Confidence            5899996 99999999888888843588887765544333222111222221 11222222211       259999998


Q ss_pred             CCC
Q 048013          176 AGF  178 (216)
Q Consensus       176 ~g~  178 (216)
                      ++.
T Consensus        75 a~~   77 (342)
T d2blla1          75 VAI   77 (342)
T ss_dssp             BCC
T ss_pred             ccc
Confidence            874

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.82  E-value=0.016  Score=43.55  Aligned_cols=37  Identities=19%  Similarity=0.426  Sum_probs=31.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      ....++|+|+|+|..|+.++..+...|.+ |++++.++
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~~-V~vlE~~~   63 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQ-VTVLEASE   63 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTCE-EEEECSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCCC-EEEEeCCC
Confidence            45667999999999999999988889985 99998764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.82  E-value=0.061  Score=34.84  Aligned_cols=40  Identities=28%  Similarity=0.414  Sum_probs=32.9

Q ss_pred             HcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           90 RANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        90 ~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      ......+++++|+|+|.+|+-++..+..+|.+ |.++++.+
T Consensus        24 ~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~~-Vtlie~~~   63 (123)
T d1nhpa2          24 KTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKK-VTVIDILD   63 (123)
T ss_dssp             HHTCTTCCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred             HhhccCCCEEEEECChHHHHHHHHHhhccceE-EEEEEecC
Confidence            33445678999999999999999999999995 88887764

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.012  Score=42.71  Aligned_cols=99  Identities=19%  Similarity=0.330  Sum_probs=56.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           95 PETNVLIMGS-GPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        95 ~~~~vlv~Ga-g~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      .+++|||.|+ |-+|..+++.+...|. ++|++++|++.+..... ...-.....+  ..+.. .+.+    .-.++|++
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~-~~~i~~~~~D--~~~~~-~~~~----~~~~~d~v   84 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-YKNVNQEVVD--FEKLD-DYAS----AFQGHDVG   84 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-GGGCEEEECC--GGGGG-GGGG----GGSSCSEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccc-cceeeeeeec--ccccc-cccc----cccccccc
Confidence            3478999997 9999999998887774 46888888654322111 1111111111  11111 1111    12479999


Q ss_pred             EEcCCCHH--------------HHHHHHHHhhcCC--EEEEeccC
Q 048013          173 FDCAGFNK--------------TMSTALSATRAGG--KVCLVGMG  201 (216)
Q Consensus       173 i~~~g~~~--------------~~~~~~~~l~~~G--~~v~~g~~  201 (216)
                      |.+++...              ....+.+.+...|  +++.++..
T Consensus        85 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~  129 (232)
T d2bkaa1          85 FCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSK  129 (232)
T ss_dssp             EECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             cccccccccccchhhhhhhcccccceeeecccccCccccccCCcc
Confidence            99998521              2234455554444  67766643

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=94.67  E-value=0.071  Score=39.21  Aligned_cols=33  Identities=24%  Similarity=0.484  Sum_probs=28.6

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      ++|||+|+ |-+|..++..+...|.+ |++++++.
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~~-V~~l~R~~   37 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGHP-TFLLVRES   37 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCC-EEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCe-EEEEECCC
Confidence            57999997 99999999999999986 88887764

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.66  E-value=0.052  Score=37.73  Aligned_cols=88  Identities=15%  Similarity=0.068  Sum_probs=48.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC--hHHHHHHHHcCCCEEEe--CCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD--DYRLSVAKKLGADNIVK--VSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~--~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      .|.|+|+|.+|.+.+..+...|.+ |....++  ++..+.+.+-.....+.  .....-.....+.+.    -...|+++
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~-V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~ad~Ii   76 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNE-VRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKC----LENAEVVL   76 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCE-EEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHH----HTTCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCE-EEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHH----Hhccchhh
Confidence            588999999999999888888874 7777664  33344443221110000  000000001112221    23689999


Q ss_pred             EcCCCHHHHHHHHHHhhc
Q 048013          174 DCAGFNKTMSTALSATRA  191 (216)
Q Consensus       174 ~~~g~~~~~~~~~~~l~~  191 (216)
                      .++.. ..++..++-+.+
T Consensus        77 ~avps-~~~~~~~~~l~~   93 (180)
T d1txga2          77 LGVST-DGVLPVMSRILP   93 (180)
T ss_dssp             ECSCG-GGHHHHHHHHTT
T ss_pred             cccch-hhhHHHHHhhcc
Confidence            99998 444555554443

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.64  E-value=0.064  Score=40.61  Aligned_cols=32  Identities=19%  Similarity=-0.012  Sum_probs=28.0

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      +++||+|+ |-+|..++..+...|++ |+++++.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~-V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYE-VHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCE-EEEEECC
Confidence            57899996 99999999999999995 9999874

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.53  E-value=0.37  Score=32.17  Aligned_cols=101  Identities=11%  Similarity=0.038  Sum_probs=53.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHH-HHHHHHcCCC-----------EEEeCCCCcccHHHHHHHHHHH
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYR-LSVAKKLGAD-----------NIVKVSTNLQDIAEEVEKIQKA  164 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~-~~~~~~~g~~-----------~~~~~~~~~~~~~~~~~~~~~~  164 (216)
                      ++|-++|.|.||...++-+...|. .+ +..++.++ .+..++.+..           .++......+........+. .
T Consensus         1 ekIg~IGlG~MG~~ma~~L~~~g~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~-~   77 (156)
T d2cvza2           1 EKVAFIGLGAMGYPMAGHLARRFP-TL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALY-P   77 (156)
T ss_dssp             CCEEEECCSTTHHHHHHHHHTTSC-EE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHT-T
T ss_pred             CeEEEEeHHHHHHHHHHHHHhCCC-EE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhcccc-c
Confidence            368899999999998888877776 34 45555544 4445544322           12211111122222222222 1


Q ss_pred             cCCCccEEEEcCC-CHHHHHHHHHHhhcC-CEEEEecc
Q 048013          165 MGTGIDVSFDCAG-FNKTMSTALSATRAG-GKVCLVGM  200 (216)
Q Consensus       165 ~~~~~d~vi~~~g-~~~~~~~~~~~l~~~-G~~v~~g~  200 (216)
                      ...+-..++|++. .++..+...+.++.. .+++...+
T Consensus        78 ~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapV  115 (156)
T d2cvza2          78 YLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPV  115 (156)
T ss_dssp             TCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCE
T ss_pred             cccccccccccccCCHHHHHHHHHHHHHcCCeEEeccc
Confidence            2334556666554 455556666666654 46665543

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.50  E-value=0.35  Score=36.44  Aligned_cols=101  Identities=16%  Similarity=0.168  Sum_probs=60.6

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCC--EEEeCCCCcccHHHHHHHHHHHc
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGAD--NIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      ...++.+||-..+|. |...+.+++ .|+ .|+.+|.++..++.+++    .+..  .+..+   ..|..+.+++..+ .
T Consensus       129 ~~~~~~rVLdlf~~t-G~~sl~aa~-~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i---~~D~~~~l~~~~~-~  201 (309)
T d2igta1         129 TADRPLKVLNLFGYT-GVASLVAAA-AGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWI---CEDAMKFIQREER-R  201 (309)
T ss_dssp             HSSSCCEEEEETCTT-CHHHHHHHH-TTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEE---CSCHHHHHHHHHH-H
T ss_pred             hccCCCeEEEecCCC-cHHHHHHHh-CCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEE---eCCHHHhHHHHhh-c
Confidence            456788999886532 334444443 688 49999999998888754    2332  22221   2455555554432 3


Q ss_pred             CCCccEEEEcCCC----------------HHHHHHHHHHhhcCCEEEEec
Q 048013          166 GTGIDVSFDCAGF----------------NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       166 ~~~~d~vi~~~g~----------------~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      +..||+||---..                ......+..+++|+|.++++.
T Consensus       202 ~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         202 GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             CCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            6789998853221                123345667788888765553

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.031  Score=41.60  Aligned_cols=104  Identities=14%  Similarity=0.105  Sum_probs=58.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHc-----CCC-eEEEEcCChHHHHHHHHc-C----CC-EEEeCCCCcccHHHHHHHH
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAF-----GAP-RIVIVDVDDYRLSVAKKL-G----AD-NIVKVSTNLQDIAEEVEKI  161 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~-----g~~-~vv~~~~~~~~~~~~~~~-g----~~-~~~~~~~~~~~~~~~~~~~  161 (216)
                      ++.-+||-+|+|. |..+..+++.+     +.. .++++|.++.-++.+++. .    .. ..+..  ....+.+.....
T Consensus        39 ~~~~~VLDiGcG~-G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  115 (280)
T d1jqea_          39 KSEIKILSIGGGA-GEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAW--HKETSSEYQSRM  115 (280)
T ss_dssp             CSEEEEEEETCTT-SHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEE--ECSCHHHHHHHH
T ss_pred             CCCCeEEEEcCCC-CHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccc--hhhhhhhhcchh
Confidence            4445799999764 44444444332     221 478899998877776542 1    11 11111  111222211111


Q ss_pred             H-HHcCCCccEEEEcCC-----C-HHHHHHHHHHhhcCCEEEEecc
Q 048013          162 Q-KAMGTGIDVSFDCAG-----F-NKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       162 ~-~~~~~~~d~vi~~~g-----~-~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      . ......||+|+..-.     + ...++.+.+.|+|+|.+++.-.
T Consensus       116 ~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~  161 (280)
T d1jqea_         116 LEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV  161 (280)
T ss_dssp             TTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEe
Confidence            1 113567999887333     3 3577889999999998887653

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.43  E-value=0.066  Score=39.72  Aligned_cols=33  Identities=30%  Similarity=0.467  Sum_probs=27.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      ++|||+|+ |-+|..++..+...|.+ |++++|+.
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~-V~~~~R~~   37 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHP-TYVLFRPE   37 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCC-EEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCE-EEEEECCC
Confidence            46999996 99999999999889986 88887754

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.41  E-value=0.42  Score=32.29  Aligned_cols=40  Identities=20%  Similarity=0.444  Sum_probs=33.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHH
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRL  133 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~  133 (216)
                      .+..+|.|+|+|.+|..++..+...|. +.++.+|.++++.
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a   58 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKL   58 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchh
Confidence            456789999999999999988888874 5799999987664

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.40  E-value=0.025  Score=41.49  Aligned_cols=33  Identities=27%  Similarity=0.494  Sum_probs=28.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      .|+|+|+|..|+.++.+++..|.+.|++++++.
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            689999999999999999999976677887764

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.36  E-value=0.16  Score=33.17  Aligned_cols=91  Identities=14%  Similarity=0.146  Sum_probs=55.3

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      +|.|+|+ |.||+++.++++..+...+..++.+...  .+  -.++.++++. .++...+.++...   ..+..+|+.++
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~~--~~--~~~DVvIDFS-~p~~~~~~l~~~~---~~~~p~ViGTT   73 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGVE--EL--DSPDVVIDFS-SPEALPKTVDLCK---KYRAGLVLGTT   73 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEEE--EC--SCCSEEEECS-CGGGHHHHHHHHH---HHTCEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcHH--Hh--ccCCEEEEec-CHHHHHHHHHHHH---hcCCCEEEEcC
Confidence            5889996 9999999999998888645455544321  11  2456677763 3444444444432   23577899999


Q ss_pred             CCHHHHHHHHHHhhcCCEEE
Q 048013          177 GFNKTMSTALSATRAGGKVC  196 (216)
Q Consensus       177 g~~~~~~~~~~~l~~~G~~v  196 (216)
                      |-.+-....++.+...-.++
T Consensus        74 G~~~~~~~~i~~~ak~~pv~   93 (128)
T d1vm6a3          74 ALKEEHLQMLRELSKEVPVV   93 (128)
T ss_dssp             SCCHHHHHHHHHHTTTSEEE
T ss_pred             CCCHHHHHHHHHHHhhCCEE
Confidence            95344344455555444433

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.36  E-value=0.039  Score=40.56  Aligned_cols=32  Identities=25%  Similarity=0.447  Sum_probs=27.7

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      +|||+|+ |-+|..++..++..|++ |+++++++
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~-Vi~~~r~~   35 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVE-VIPTDVQD   35 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEE-EEEECTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCE-EEEeechh
Confidence            5899996 99999999999999985 88888753

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.36  E-value=0.022  Score=41.00  Aligned_cols=33  Identities=21%  Similarity=0.473  Sum_probs=28.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      .|+|+|+|..|+.++..+...|.+.|+++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            488999999999999999889975588888764

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=94.34  E-value=0.031  Score=40.43  Aligned_cols=35  Identities=31%  Similarity=0.494  Sum_probs=30.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      +..++|+|+|+|..|++++..+...|.+ |.++++.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~-V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGYS-VHILARD   38 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCCC-EEEEeCC
Confidence            4557899999999999999999999995 8888864

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=94.32  E-value=0.077  Score=40.80  Aligned_cols=33  Identities=18%  Similarity=0.050  Sum_probs=27.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      +.+||+|+ |-+|..++..+...|.+ |+++++..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~-V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYE-VHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCE-EEEEECCC
Confidence            57889996 99999999999889985 89998743

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.27  E-value=0.027  Score=40.76  Aligned_cols=36  Identities=25%  Similarity=0.403  Sum_probs=31.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      +.+++|+|+|+|+.|+.++..++..|++ |++++.++
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~-v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYT-VHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccc-eeeEeecc
Confidence            4678999999999999999999999995 88887665

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.24  E-value=0.034  Score=35.68  Aligned_cols=35  Identities=23%  Similarity=0.428  Sum_probs=30.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      .+++++|+|+|.+|.=+++.+..+|.+ |.++.+.+
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~~-Vtlve~~~   55 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGTK-VTILEGAG   55 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred             cCCeEEEECCCccceeeeeeecccccE-EEEEEecc
Confidence            457899999999999999999999995 88887665

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.20  E-value=0.16  Score=38.62  Aligned_cols=99  Identities=16%  Similarity=0.156  Sum_probs=65.3

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChHHHHHH----HHcCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARA-FGAPRIVIVDVDDYRLSVA----KKLGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~-~g~~~vv~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      +....+..+++.|+|+|..+...+..+.. +..++|.+.+++.++.+.+    +..+......       ..+   ..  
T Consensus       118 ~~la~~~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~-------~~~---a~--  185 (320)
T d1omoa_         118 KYLARKNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQ-------PAE---EA--  185 (320)
T ss_dssp             HHHSCTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEEC-------CHH---HH--
T ss_pred             HHhccCCccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccc-------hhh---hh--
Confidence            33444566789999999888777766654 6788899999998876543    3344433221       111   11  


Q ss_pred             HcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          164 AMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                         .+.|+|+-++.+...+ .-.+.++|+-.+..+|...+
T Consensus       186 ---~~aDiV~taT~s~~P~-~~~~~l~~G~hv~~iGs~~p  221 (320)
T d1omoa_         186 ---SRCDVLVTTTPSRKPV-VKAEWVEEGTHINAIGADGP  221 (320)
T ss_dssp             ---TSSSEEEECCCCSSCC-BCGGGCCTTCEEEECSCCST
T ss_pred             ---ccccEEEEeccCcccc-cchhhcCCCCeEeecCCccc
Confidence               3689999999873321 11246899999999996544

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=94.19  E-value=0.3  Score=33.39  Aligned_cols=98  Identities=18%  Similarity=0.256  Sum_probs=57.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEE-cCC-hHHHHHHHHcCCCE------E--------------EeCCCCcccHH
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIV-DVD-DYRLSVAKKLGADN------I--------------VKVSTNLQDIA  155 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~-~~~-~~~~~~~~~~g~~~------~--------------~~~~~~~~~~~  155 (216)
                      +|.|.|.|-+|.++.+.+...+.+ ++++ +.. .+...++-++....      +              ..+..  .+. 
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i~-iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~--~~p-   77 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGVE-VALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAV--KDP-   77 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCC-EEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECC--SSG-
T ss_pred             EEEEECCcHHHHHHHHHHhcCCCE-EEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEec--CCh-
Confidence            578999999999999998888887 5555 332 23333443332110      0              01101  111 


Q ss_pred             HHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          156 EEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       156 ~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                         .++ .....++|+|+||+|.-...+.+...+..+.+=|+++-+..
T Consensus        78 ---~~i-~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~k  121 (168)
T d2g82a1          78 ---KEI-PWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAK  121 (168)
T ss_dssp             ---GGC-CTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred             ---HHC-cccccCCceeEeccccccchHHhhhhhccccceeeeccccc
Confidence               110 01235799999999975455667777887765566665443

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=94.02  E-value=0.032  Score=40.83  Aligned_cols=96  Identities=15%  Similarity=0.156  Sum_probs=59.9

Q ss_pred             CCCEEEEEcC--CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEEEeCCCCcccHHHHHHHHHHHcCCC
Q 048013           95 PETNVLIMGS--GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNIVKVSTNLQDIAEEVEKIQKAMGTG  168 (216)
Q Consensus        95 ~~~~vlv~Ga--g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (216)
                      ...+++.+|+  |--|+.   ++..+.-..++.++++.+|..++    ++++...+..++.+.+++    ... ......
T Consensus        70 ~~~~ilDiGSGaGfPGi~---laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~----~~~-~~~~~~  141 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLP---IKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETF----GQR-KDVRES  141 (239)
T ss_dssp             GCCEEEEECSSSCTTHHH---HHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHH----TTC-TTTTTC
T ss_pred             CCCeEEeecCCCchHHHH---HHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhc----ccc-cccccc
Confidence            5678888885  434543   44444333699999999997776    457887655443332211    100 012346


Q ss_pred             ccEEEE-cCCC-HHHHHHHHHHhhcCCEEEEe
Q 048013          169 IDVSFD-CAGF-NKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       169 ~d~vi~-~~g~-~~~~~~~~~~l~~~G~~v~~  198 (216)
                      ||+|+. +++. +..++.+.+.++++|+++.+
T Consensus       142 ~D~v~sRAva~l~~ll~~~~~~l~~~g~~i~~  173 (239)
T d1xdza_         142 YDIVTARAVARLSVLSELCLPLVKKNGLFVAL  173 (239)
T ss_dssp             EEEEEEECCSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ceEEEEhhhhCHHHHHHHHhhhcccCCEEEEE
Confidence            899886 4443 35567788888999998877

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.01  E-value=0.029  Score=41.67  Aligned_cols=32  Identities=31%  Similarity=0.460  Sum_probs=28.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      .|+|+|+|+.|+.++..++..|.+ |+++++..
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~-v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGID-NVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCC-EEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCC-EEEEeCCC
Confidence            489999999999999999999996 89998765

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=94.00  E-value=0.52  Score=34.87  Aligned_cols=111  Identities=15%  Similarity=0.174  Sum_probs=68.1

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc--CChHHHHHHHHcCCCEEEeCCCC----------------
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVD--VDDYRLSVAKKLGADNIVKVSTN----------------  150 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~--~~~~~~~~~~~~g~~~~~~~~~~----------------  150 (216)
                      +...+.+.++|+...+|+.|++++..++.+|.+.++++.  .++.|.+.++.+|+..++.....                
T Consensus        53 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~~~  132 (292)
T d2bhsa1          53 KRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRG  132 (292)
T ss_dssp             HTTSCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHT
T ss_pred             HhCCcCCCceeeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHHHhCCCcceeecccchHHHHHHHhhccccc
Confidence            444556677766667899999999999999997555553  34677888899999765432110                


Q ss_pred             ----------cccHHH----HHHHHHHHcCCCccEEEEcCCCHHHHHH---HHHHhhcCCEEEEec
Q 048013          151 ----------LQDIAE----EVEKIQKAMGTGIDVSFDCAGFNKTMST---ALSATRAGGKVCLVG  199 (216)
Q Consensus       151 ----------~~~~~~----~~~~~~~~~~~~~d~vi~~~g~~~~~~~---~~~~l~~~G~~v~~g  199 (216)
                                ..++..    ...++.+..+..+|.++.++|+-..+.-   .++.+.+..+++.+-
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~a~Ei~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~Ve  198 (292)
T d2bhsa1         133 EGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQ  198 (292)
T ss_dssp             SSEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred             cccccCCCchhcchhhHHHHHHHHhHHhcCCCCCcccccCCCccchhhhhhhhhhccCcceEEEec
Confidence                      001111    1123333345568999988886444433   334445667776553

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.97  E-value=0.047  Score=35.41  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=30.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      ..++++|+|+|.+|.=+++.+..+|.+ |.++.+.+
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~-Vtii~~~~   56 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGSK-VTVVEFQP   56 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSS
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCcc-eeEEEecc
Confidence            357999999999999999999999996 88887654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.95  E-value=0.052  Score=35.20  Aligned_cols=34  Identities=12%  Similarity=0.153  Sum_probs=29.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      .+++++|+|+|.+|+=.++.+..+|.+ |.++.++
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~-Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLD-VTVMVRS   52 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCe-EEEEEec
Confidence            457899999999999999999999997 6666654

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=93.95  E-value=0.095  Score=38.49  Aligned_cols=100  Identities=18%  Similarity=0.164  Sum_probs=61.0

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHH----HHcCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVA----KKLGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      +.....+..+||-+|+|. |..+..++++. +. +++++|.+ +..+.+    ++.+....+....  .+..+       
T Consensus        75 ~~~d~~~~~~vlDvG~G~-G~~~~~l~~~~P~~-~~~~~Dlp-~~~~~a~~~~~~~~~~~ri~~~~--~d~~~-------  142 (256)
T d1qzza2          75 DAYDWSAVRHVLDVGGGN-GGMLAAIALRAPHL-RGTLVELA-GPAERARRRFADAGLADRVTVAE--GDFFK-------  142 (256)
T ss_dssp             HTSCCTTCCEEEEETCTT-SHHHHHHHHHCTTC-EEEEEECH-HHHHHHHHHHHHTTCTTTEEEEE--CCTTS-------
T ss_pred             hcCCCccCCEEEEECCCC-CHHHHHHHHhhcCc-EEEEecCh-HHHHHHHHHHhhcCCcceeeeee--eeccc-------
Confidence            445567778999999875 78888999886 45 58889864 333333    3344332111101  11100       


Q ss_pred             HcCCCccEEEEcCC-----CH---HHHHHHHHHhhcCCEEEEecc
Q 048013          164 AMGTGIDVSFDCAG-----FN---KTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       164 ~~~~~~d~vi~~~g-----~~---~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      ....++|+++-.--     ..   ..++.+.+.|+|+|+++++..
T Consensus       143 ~~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         143 PLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             CCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cccccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            12346888774321     11   346788899999999998864

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=93.92  E-value=0.066  Score=36.26  Aligned_cols=40  Identities=23%  Similarity=0.168  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHH
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRL  133 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~  133 (216)
                      ++..+|.|+|+|.+|...+.++...+...++.+|.++++.
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~   44 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMP   44 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHH
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccc
Confidence            5567899999999998888888877866789999887653

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=93.89  E-value=0.32  Score=33.39  Aligned_cols=99  Identities=20%  Similarity=0.253  Sum_probs=57.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC--CC-eEEEEc--CChHHHHHHHHcCCCE------E--------------EeCCCCcc
Q 048013           98 NVLIMGSGPIGLVTMLAARAFG--AP-RIVIVD--VDDYRLSVAKKLGADN------I--------------VKVSTNLQ  152 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g--~~-~vv~~~--~~~~~~~~~~~~g~~~------~--------------~~~~~~~~  152 (216)
                      +|.|.|.|-+|.++.+.+...+  .. .++++.  .+.+...++-++....      +              ..+..  .
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~--~   80 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDAN--R   80 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECC--S
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEec--C
Confidence            5789999999999998776432  11 244443  2334444554432111      0              01001  1


Q ss_pred             cHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          153 DIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       153 ~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      +.    .++ .....++|+|+||+|.-.....+.+.|..+.+-|+++-+..
T Consensus        81 ~p----~~i-~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~  126 (173)
T d1obfo1          81 NP----AQL-PWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGG  126 (173)
T ss_dssp             CG----GGS-CTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCC
T ss_pred             CH----HHC-cccccccceEEEecccccCHHHHHHHhccCCcceEEecCCC
Confidence            11    111 01345899999999974555677788888877777765443

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.89  E-value=0.045  Score=35.11  Aligned_cols=34  Identities=24%  Similarity=0.339  Sum_probs=29.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      +++++|+|+|.+|+=+++.++.+|.+ |.++.+.+
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~-Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAK-THLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccE-EEEEeecc
Confidence            47899999999999999999999995 88887765

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=93.86  E-value=0.054  Score=35.05  Aligned_cols=37  Identities=32%  Similarity=0.617  Sum_probs=32.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      ++++++++|+|+|.+|.=++..++..|.+ |..+++.+
T Consensus        27 ~~~~~~vvIIGgG~iG~E~A~~l~~~g~~-Vtli~~~~   63 (121)
T d1d7ya2          27 LRPQSRLLIVGGGVIGLELAATARTAGVH-VSLVETQP   63 (121)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred             hhcCCeEEEECcchhHHHHHHHhhcccce-EEEEeecc
Confidence            46779999999999999999999999985 88887765

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.85  E-value=0.059  Score=41.38  Aligned_cols=76  Identities=16%  Similarity=0.195  Sum_probs=46.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      ..+.+|||+|+ |-+|..++..+...|.+ |+++++..... .............+.  .+...... .    -.++|.|
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~-V~~~d~~~~~~-~~~~~~~~~~~~~D~--~~~~~~~~-~----~~~~d~V   83 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGHY-VIASDWKKNEH-MTEDMFCDEFHLVDL--RVMENCLK-V----TEGVDHV   83 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCSS-SCGGGTCSEEEECCT--TSHHHHHH-H----HTTCSEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCE-EEEEeCCCccc-hhhhcccCcEEEeec--hhHHHHHH-H----hhcCCeE
Confidence            35778999986 99999999999999985 88887643321 111222223333221  23222222 2    1379999


Q ss_pred             EEcCCC
Q 048013          173 FDCAGF  178 (216)
Q Consensus       173 i~~~g~  178 (216)
                      +.+++.
T Consensus        84 ih~a~~   89 (363)
T d2c5aa1          84 FNLAAD   89 (363)
T ss_dssp             EECCCC
T ss_pred             eecccc
Confidence            997753

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.76  E-value=0.06  Score=38.60  Aligned_cols=101  Identities=14%  Similarity=0.146  Sum_probs=60.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHHHHH----HHcCCCEEEeCCCCcccHHHHHHHHHHHc-CC
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRLSVA----KKLGADNIVKVSTNLQDIAEEVEKIQKAM-GT  167 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~  167 (216)
                      ...++||-+|.+. |..++.+|+++.- .+++.++.+++..+.+    +..|....+.+  ...+..+.+.++.+.. ..
T Consensus        55 ~kpk~ILEiGt~~-G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l--~~Gd~~e~l~~l~~~~~~~  131 (214)
T d2cl5a1          55 YSPSLVLELGAYC-GYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTI--LNGASQDLIPQLKKKYDVD  131 (214)
T ss_dssp             HCCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEE--EESCHHHHGGGHHHHSCCC
T ss_pred             hCCCEEEEEccCc-hhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCcccee--eeccccccccchhhccccc
Confidence            4557999999653 6667777877532 2699999998876655    44565431221  1234555555444322 35


Q ss_pred             CccEEEEcCCCHH-----HHHHHHHHhhcCCEEEE
Q 048013          168 GIDVSFDCAGFNK-----TMSTALSATRAGGKVCL  197 (216)
Q Consensus       168 ~~d~vi~~~g~~~-----~~~~~~~~l~~~G~~v~  197 (216)
                      .+|++|--..-..     .+...++.|+|+|.++.
T Consensus       132 ~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         132 TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             CEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             ccceeeecccccccccHHHHHHHhCccCCCcEEEE
Confidence            6898775432211     23445567899997764

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=0.084  Score=38.90  Aligned_cols=46  Identities=17%  Similarity=0.216  Sum_probs=32.6

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH
Q 048013           91 ANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK  138 (216)
Q Consensus        91 ~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~  138 (216)
                      .+...+.++|-+|+|+ |...+..+.... .+|+++|-++..++.+++
T Consensus        50 ~g~~~g~~vLDiGcG~-g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~   95 (263)
T d2g72a1          50 TGEVSGRTLIDIGSGP-TVYQLLSACSHF-EDITMTDFLEVNRQELGR   95 (263)
T ss_dssp             TSCSCCSEEEEETCTT-CCGGGTTGGGGC-SEEEEECSCHHHHHHHHH
T ss_pred             CCCCCCcEEEEeccCC-CHHHHHHhcccC-CeEEEEeCCHHHHHHHHH
Confidence            3556789999999875 444333343344 369999999998888765

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=93.62  E-value=0.061  Score=36.50  Aligned_cols=36  Identities=11%  Similarity=0.297  Sum_probs=29.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCCh
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAP-RIVIVDVDD  130 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~-~vv~~~~~~  130 (216)
                      +|++|+|+|+|..|.-++..++.++.+ .|++++.++
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            478999999999999999988888754 477777654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.61  E-value=0.33  Score=29.36  Aligned_cols=67  Identities=18%  Similarity=0.267  Sum_probs=45.9

Q ss_pred             CEEEEEcCCHHHHH-HHHHHHHcCCCeEEEEcCCh-HHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           97 TNVLIMGSGPIGLV-TMLAARAFGAPRIVIVDVDD-YRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        97 ~~vlv~Gag~~G~~-~i~~a~~~g~~~vv~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      .+|-++|-|++|.. .+++++..|++ |...|..+ +..+.+++.|......  .+.++            =.+.|.|+-
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~-VsGSD~~~~~~t~~L~~~Gi~i~~g--h~~~~------------i~~~d~vV~   66 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGND-VYGSNIEETERTAYLRKLGIPIFVP--HSADN------------WYDPDLVIK   66 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEECSSCCHHHHHHHHTTCCEESS--CCTTS------------CCCCSEEEE
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCe-EEEEeCCCChhHHHHHHCCCeEEee--ecccc------------cCCCCEEEE
Confidence            35777898777864 57889999995 99999886 4466788999874322  22222            135788877


Q ss_pred             cCCC
Q 048013          175 CAGF  178 (216)
Q Consensus       175 ~~g~  178 (216)
                      +..-
T Consensus        67 SsAI   70 (89)
T d1j6ua1          67 TPAV   70 (89)
T ss_dssp             CTTC
T ss_pred             ecCc
Confidence            6653

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.59  E-value=0.4  Score=32.72  Aligned_cols=101  Identities=20%  Similarity=0.231  Sum_probs=56.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc---CCCeEEEE-cC-ChHHHHHHHHcCC----C--EEE------eCCC------CcccH
Q 048013           98 NVLIMGSGPIGLVTMLAARAF---GAPRIVIV-DV-DDYRLSVAKKLGA----D--NIV------KVST------NLQDI  154 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~---g~~~vv~~-~~-~~~~~~~~~~~g~----~--~~~------~~~~------~~~~~  154 (216)
                      +|.|.|.|-+|.++.+.+...   +.+ ++++ +. +.+...++-++..    .  .+.      .++.      ...+.
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~-vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p   80 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIE-VVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP   80 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCE-EEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEE-EEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCCh
Confidence            688999999999999877643   243 5555 22 2344444444311    1  110      0000      00111


Q ss_pred             HHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCC
Q 048013          155 AEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHRE  204 (216)
Q Consensus       155 ~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~  204 (216)
                      .+ + .|.   ..++|+|+||+|--...+.+...+..+.+-++++-+..+
T Consensus        81 ~~-i-~W~---~~gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP~kd  125 (169)
T d1hdgo1          81 SK-L-PWK---DLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKG  125 (169)
T ss_dssp             GG-S-CHH---HHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBS
T ss_pred             hh-C-Ccc---ccCCCEEEEecceeccccchhhhccCCCceEEEecccCC
Confidence            11 1 121   236999999999755556777788877655666655443

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.52  E-value=0.062  Score=34.58  Aligned_cols=35  Identities=23%  Similarity=0.354  Sum_probs=29.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      -+++++|+|+|.+|.=+++.+..+|.+ |.++.+.+
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~-Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGAE-VTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCc-eEEEEeec
Confidence            458899999999999999999999996 77776554

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.49  E-value=0.071  Score=35.06  Aligned_cols=37  Identities=19%  Similarity=0.370  Sum_probs=32.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      ++++++++|+|+|.+|.=++..++.+|.+ |.++++.+
T Consensus        32 ~~~~k~v~VIGgG~iG~E~A~~l~~~g~~-Vtvie~~~   68 (133)
T d1q1ra2          32 LIADNRLVVIGGGYIGLEVAATAIKANMH-VTLLDTAA   68 (133)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSS
T ss_pred             hccCCEEEEECCchHHHHHHHHHHhhCcc-eeeeeecc
Confidence            46779999999999999999999999995 88887764

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=93.47  E-value=0.59  Score=30.68  Aligned_cols=37  Identities=22%  Similarity=0.355  Sum_probs=29.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHH
Q 048013           98 NVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLS  134 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~  134 (216)
                      +|.|+|+|.+|...+..+...+ ++.++.+|.++++.+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~   39 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQ   39 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccch
Confidence            5788899999999888887777 457999999887644

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.45  E-value=0.041  Score=41.81  Aligned_cols=34  Identities=29%  Similarity=0.404  Sum_probs=29.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      .++|+|+|||..|+.++..+...|.+ |.+++.++
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~-V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQ-VHIIDQRD   35 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCE-EEEEESSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCC-EEEEECCC
Confidence            57899999999999999998888984 89998775

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=93.43  E-value=0.042  Score=41.53  Aligned_cols=33  Identities=24%  Similarity=0.548  Sum_probs=28.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChH
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDY  131 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~  131 (216)
                      .|+|+|||..|++++..++..|.+ ++++++.++
T Consensus         9 dV~IIGAG~sGl~~a~~L~~~G~~-v~i~Ek~~~   41 (298)
T d1w4xa1           9 DVLVVGAGFSGLYALYRLRELGRS-VHVIETAGD   41 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCC-EEEECSSSS
T ss_pred             CEEEECccHHHHHHHHHHHhCCCC-EEEEEcCCC
Confidence            578899999999999999999996 888987653

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.39  E-value=0.24  Score=32.21  Aligned_cols=90  Identities=22%  Similarity=0.282  Sum_probs=54.3

Q ss_pred             CCCCEEEEEcCCH--HH---------HHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHH
Q 048013           94 GPETNVLIMGSGP--IG---------LVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        94 ~~~~~vlv~Gag~--~G---------~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  162 (216)
                      ..-++|||+|+|+  +|         ..+++.++..|++ ++.+..|.+....-.. -++.++...-..++..+.++.  
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~-~iliN~NP~TVstd~d-~aD~lYfePlt~e~v~~Ii~~--   80 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYR-VINVNSNPATIMTDPE-MADATYIEPIHWEVVRKIIEK--   80 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCE-EEEECSCTTCGGGCGG-GSSEEECSCCCHHHHHHHHHH--
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCe-EEEecCchHhhhcChh-hcceeeeecCCHHHHHHHHHH--
Confidence            3457899999864  23         4456667778995 8899888766432211 123333211122233333322  


Q ss_pred             HHcCCCccEEEEcCCCHHHHHHHHHHhhc
Q 048013          163 KAMGTGIDVSFDCAGFNKTMSTALSATRA  191 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~~~~~~~~~~~l~~  191 (216)
                          ...|.++-..|++..+..+.++.+.
T Consensus        81 ----E~pd~il~~~GGQtalnla~~L~~~  105 (127)
T d1a9xa3          81 ----ERPDAVLPTMGGQTALNCALELERQ  105 (127)
T ss_dssp             ----HCCSEEECSSSHHHHHHHHHHHHHT
T ss_pred             ----hCcCCeEEEeeeehHhHHHHHHHHc
Confidence                3699999999997777667666543

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.33  E-value=0.47  Score=35.22  Aligned_cols=105  Identities=18%  Similarity=0.227  Sum_probs=62.5

Q ss_pred             HcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHH----HHcCCCEEEeCCCCcccHHHHHHHHHHHc
Q 048013           90 RANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVA----KKLGADNIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        90 ~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      ....+++++||..-|++=|-. .+++..+.-..+++.|.++.+.+.+    +.+|...+...... ....    ..  ..
T Consensus        97 ~L~~~~g~~vLD~CAaPGgKt-~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~-~~~~----~~--~~  168 (284)
T d1sqga2          97 WLAPQNGEHILDLCAAPGGKT-THILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG-RYPS----QW--CG  168 (284)
T ss_dssp             HHCCCTTCEEEEESCTTCHHH-HHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT-TCTH----HH--HT
T ss_pred             ccCccccceeEeccCccccch-hhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccc-cccc----hh--cc
Confidence            446789999998854432332 3334433323699999999887655    55788754432221 1111    11  13


Q ss_pred             CCCccEEEE---cCCCH-------------------------HHHHHHHHHhhcCCEEE--EeccCC
Q 048013          166 GTGIDVSFD---CAGFN-------------------------KTMSTALSATRAGGKVC--LVGMGH  202 (216)
Q Consensus       166 ~~~~d~vi~---~~g~~-------------------------~~~~~~~~~l~~~G~~v--~~g~~~  202 (216)
                      ...||.|+-   |+|.-                         ..+..+++.++++|+++  ++++..
T Consensus       169 ~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~  235 (284)
T d1sqga2         169 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP  235 (284)
T ss_dssp             TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred             cccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCch
Confidence            457988765   55531                         24567777899999776  455544

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=93.31  E-value=0.66  Score=31.51  Aligned_cols=101  Identities=26%  Similarity=0.235  Sum_probs=56.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCC--hHHHHHHHHc----CCC--EEE------eCCC------CcccHHH
Q 048013           98 NVLIMGSGPIGLVTMLAARAFG-APRIVIVDVD--DYRLSVAKKL----GAD--NIV------KVST------NLQDIAE  156 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~--~~~~~~~~~~----g~~--~~~------~~~~------~~~~~~~  156 (216)
                      +|.|.|.|-+|.++.+.+.... .+ ++++.-.  .+.+.++-++    |..  .+.      .++.      ...+..+
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~-ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p~~   81 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIE-IVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPAN   81 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEE-EEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCeE-EEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCChHH
Confidence            5788999999999999887653 43 5555322  2333344333    110  110      0000      0011111


Q ss_pred             HHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCC
Q 048013          157 EVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHRE  204 (216)
Q Consensus       157 ~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~  204 (216)
                       + .|   ...++|+|+||+|--...+.+...+..+.+=|+++-+..+
T Consensus        82 -i-~W---~~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~~d  124 (166)
T d1gado1          82 -L-KW---DEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKD  124 (166)
T ss_dssp             -G-CH---HHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSS
T ss_pred             -C-Cc---cccCCCEEEEccccccCHHHHHHHhcCCCceEEeeccccc
Confidence             0 12   1237999999999744456677788888766666655443

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=93.27  E-value=0.32  Score=34.67  Aligned_cols=85  Identities=21%  Similarity=0.223  Sum_probs=49.5

Q ss_pred             EEEEEcCCHHHHH-HHHHHHHc-CCCeEEEEcCChHHHHH-HHHcCCC--EEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           98 NVLIMGSGPIGLV-TMLAARAF-GAPRIVIVDVDDYRLSV-AKKLGAD--NIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        98 ~vlv~Gag~~G~~-~i~~a~~~-g~~~vv~~~~~~~~~~~-~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      +|.|+|+|.+|.. .+...+.. +.+.+-+++++.++.+. .++++..  .+..++    ++.    ++.  ....+|+|
T Consensus        35 riaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~----d~~----ell--~~~~iD~V  104 (221)
T d1h6da1          35 GYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYS----NFD----KIA--KDPKIDAV  104 (221)
T ss_dssp             EEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSS----SGG----GGG--GCTTCCEE
T ss_pred             EEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccC----chh----hhc--ccccceee
Confidence            6889999999863 44444433 56544466888887654 4667654  232222    221    111  23467888


Q ss_pred             EEcCCCHHHHHHHHHHhhcC
Q 048013          173 FDCAGFNKTMSTALSATRAG  192 (216)
Q Consensus       173 i~~~g~~~~~~~~~~~l~~~  192 (216)
                      +-++......+.+.++|..+
T Consensus       105 ~I~tp~~~H~~~~~~al~~g  124 (221)
T d1h6da1         105 YIILPNSLHAEFAIRAFKAG  124 (221)
T ss_dssp             EECSCGGGHHHHHHHHHHTT
T ss_pred             eeccchhhhhhHHHHhhhcc
Confidence            87777755555555555543

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.23  E-value=0.066  Score=37.87  Aligned_cols=40  Identities=25%  Similarity=0.388  Sum_probs=34.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK  138 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~  138 (216)
                      +|.|+|+|-+|+..+..+...|.+ |+++|.++++.+.+.+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~-V~g~D~n~~~i~~ln~   41 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHE-VIGVDVSSTKIDLINQ   41 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCE-EEEECSCHHHHHHHHT
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCc-EEEEeCCHHHHHHhcc
Confidence            578899999999988888888985 9999999998887765

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=93.22  E-value=0.049  Score=39.76  Aligned_cols=33  Identities=21%  Similarity=0.441  Sum_probs=28.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChH
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDY  131 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~  131 (216)
                      -|+|+|+|+.|++++..+...|.+ |.+++++++
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~~-V~vlEk~~~   38 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGKS-VTVFDNGKK   38 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCC-EEEECSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCc-EEEEecCCC
Confidence            378889999999998888889986 999988764

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=93.21  E-value=0.049  Score=39.38  Aligned_cols=31  Identities=32%  Similarity=0.725  Sum_probs=26.9

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      |+|+|+|+.|+.++..+...|.+ |+++++++
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~-V~liEk~~   35 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGAN-VLLLDKGN   35 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCC-EEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence            78889999999988888889996 99998765

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.19  E-value=0.56  Score=35.33  Aligned_cols=105  Identities=22%  Similarity=0.307  Sum_probs=64.3

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHHHH----HHcCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLSVA----KKLGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ....+++|++||-.-|++=| =+.+++..++ -..+++.|.++++.+.+    +++|...+.....+....        .
T Consensus       110 ~~l~~~~g~~vlD~CAapGg-Kt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~--------~  180 (313)
T d1ixka_         110 VALDPKPGEIVADMAAAPGG-KTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHI--------G  180 (313)
T ss_dssp             HHHCCCTTCEEEECCSSCSH-HHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGG--------G
T ss_pred             hcccCCccceeeecccchhh-hhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccc--------c
Confidence            44568999999887443313 2334444443 22689999999887655    557887766543322111        0


Q ss_pred             HcCCCccEEEE---cCCCH-------------------------HHHHHHHHHhhcCCEEE--EeccCC
Q 048013          164 AMGTGIDVSFD---CAGFN-------------------------KTMSTALSATRAGGKVC--LVGMGH  202 (216)
Q Consensus       164 ~~~~~~d~vi~---~~g~~-------------------------~~~~~~~~~l~~~G~~v--~~g~~~  202 (216)
                      .....||.|+-   |+|.-                         ..+..+++.++++|++|  ++++..
T Consensus       181 ~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~  249 (313)
T d1ixka_         181 ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP  249 (313)
T ss_dssp             GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred             cccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh
Confidence            13457888776   44431                         25678888999999765  556544

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.14  E-value=0.056  Score=40.34  Aligned_cols=36  Identities=28%  Similarity=0.548  Sum_probs=30.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      ++..+|+|+|+|..|+.++..+...|.+ |++++.++
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~-V~VlEa~~   38 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMD-VTLLEARD   38 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCE-EEEECSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCC-EEEEeCCC
Confidence            4556799999999999999999999995 88887653

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.18  Score=38.27  Aligned_cols=30  Identities=37%  Similarity=0.488  Sum_probs=26.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVD  127 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~  127 (216)
                      ++|||+|+ |-+|..++..+...|.+ |+++|
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~-V~~ld   33 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYL-PVVID   33 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCC-EEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCE-EEEEE
Confidence            68999996 99999999999999986 88875

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.12  E-value=0.36  Score=37.56  Aligned_cols=63  Identities=22%  Similarity=0.282  Sum_probs=44.5

Q ss_pred             HHHHHHH--cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc--CChHHHHHHHHcCCCEEEe
Q 048013           84 GVHACRR--ANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVD--VDDYRLSVAKKLGADNIVK  146 (216)
Q Consensus        84 a~~~l~~--~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~--~~~~~~~~~~~~g~~~~~~  146 (216)
                      |.+++..  .+++++.+|+--.+|+.|.+.+..|+.+|.+.++++.  .++.|.+.++.+|++.+..
T Consensus       130 A~~~i~~A~~~~~~g~~VVeaSSGN~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAeVi~~  196 (382)
T d1wkva1         130 AVEIISRLSRRVEKGSLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVD  196 (382)
T ss_dssp             HHHHHHHHTTTSCTTCEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHhccCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEeeccccccccccccccCcceeec
Confidence            4444533  3467777655445799999999999999997555553  3457778889999886654

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=93.09  E-value=0.17  Score=34.50  Aligned_cols=81  Identities=16%  Similarity=0.153  Sum_probs=45.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEcC
Q 048013           98 NVLIMGSGPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDCA  176 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  176 (216)
                      +|.|+|+|.+|...+..++.. +++.+-+.++++++.      .......+.+    .    ..    ....+|+|+.++
T Consensus         5 rvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~------~~~~~~~~~~----~----~~----~~~~~D~Vvi~t   66 (170)
T d1f06a1           5 RVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD------TKTPVFDVAD----V----DK----HADDVDVLFLCM   66 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS------SSSCEEEGGG----G----GG----TTTTCSEEEECS
T ss_pred             eEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccc------cccccccchh----h----hh----hccccceEEEeC
Confidence            578999999999888887764 565344455554321      1111211110    0    00    122467777777


Q ss_pred             CCHHHHHHHHHHhhcCCEEE
Q 048013          177 GFNKTMSTALSATRAGGKVC  196 (216)
Q Consensus       177 g~~~~~~~~~~~l~~~G~~v  196 (216)
                      +.....+.+.++|..|-.++
T Consensus        67 p~~~h~~~a~~aL~aG~~vv   86 (170)
T d1f06a1          67 GSATDIPEQAPKFAQFACTV   86 (170)
T ss_dssp             CTTTHHHHHHHHHTTTSEEE
T ss_pred             CCcccHHHHHHHHHCCCcEE
Confidence            66555566666666665554

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=93.09  E-value=0.78  Score=34.25  Aligned_cols=102  Identities=16%  Similarity=0.150  Sum_probs=65.2

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC--ChHHHHHHHHcCCCEEEeCCCCc---------------
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDV--DDYRLSVAKKLGADNIVKVSTNL---------------  151 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~--~~~~~~~~~~~g~~~~~~~~~~~---------------  151 (216)
                      +...+.++++|+...+|+-|.+++..++.+|.+.++++..  +..|.+.++.+|+..+.......               
T Consensus        54 ~~g~~~~~~~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~~~~~~~~~~~~~~~~  133 (310)
T d1y7la1          54 KDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASD  133 (310)
T ss_dssp             HTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHC
T ss_pred             HcCCCCCCceeeeecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCceEeccCccccchhhHHHHHHHHhh
Confidence            3445677777776678999999999999999986666543  35677788889988665321100               


Q ss_pred             ----------cc---HH---H-HHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhh
Q 048013          152 ----------QD---IA---E-EVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATR  190 (216)
Q Consensus       152 ----------~~---~~---~-~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~  190 (216)
                                .+   ..   + ...++.+..+..+|.++.++|+-..+....+.++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~~~~~~~d~vv~~~G~Gg~~~G~~~~lk  189 (310)
T d1y7la1         134 PSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIK  189 (310)
T ss_dssp             TTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHH
T ss_pred             cCccccCCCCcchhhHHHhhhhHHHHHHHhcCCCCCEEEecCcCCcchhHHHHHHH
Confidence                      00   00   0 1123333445568999998887555555555554

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=93.05  E-value=0.64  Score=30.60  Aligned_cols=36  Identities=22%  Similarity=0.382  Sum_probs=26.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHH
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYR  132 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~  132 (216)
                      .+|.|+|+|.+|...+..+...+. +.++.+|.++++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~   38 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEK   38 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCc
Confidence            367888999999988877777664 469999988865

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.03  E-value=0.7  Score=30.21  Aligned_cols=76  Identities=18%  Similarity=0.280  Sum_probs=49.1

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEEc
Q 048013           98 NVLIMGS-GPIGLVTMLAARAF-GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFDC  175 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~-g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  175 (216)
                      +|.|.|+ |-||..+++..... +++.+-.+|+. +.......-+++.++++. .++...+.++...   ..+.-+|+.+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~-~~~~~~~~~~~DvvIDFS-~p~~~~~~~~~~~---~~~~~~ViGT   75 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG-DPLSLLTDGNTEVVIDFT-HPDVVMGNLEFLI---DNGIHAVVGT   75 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT-CCTHHHHTTTCSEEEECC-CTTTHHHHHHHHH---HTTCEEEECC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC-CchhhhccccCCEEEEcc-cHHHHHHHHHHHH---hcCCCEEEec
Confidence            5789996 99999999887664 56544445543 233344445778888874 3444444444432   3468889999


Q ss_pred             CCC
Q 048013          176 AGF  178 (216)
Q Consensus       176 ~g~  178 (216)
                      +|=
T Consensus        76 TG~   78 (135)
T d1yl7a1          76 TGF   78 (135)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            995

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.00  E-value=0.068  Score=34.10  Aligned_cols=34  Identities=29%  Similarity=0.582  Sum_probs=29.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      +++++|+|+|.+|.=+++.+..+|.+ |.++.+.+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~-Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQ-VSVVEARE   54 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCE-EEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccc-eEEEeeec
Confidence            47899999999999999999999995 88887764

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=0.079  Score=34.35  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=30.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      .++++|+|+|.+|+=++..++.+|.+ |.++.+.+
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~-Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSK-TSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcE-EEEEeecc
Confidence            47899999999999999999999995 88887764

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=92.87  E-value=0.32  Score=33.55  Aligned_cols=94  Identities=15%  Similarity=0.102  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHcCCCcc
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      .+.++|-..+|. |.+.+. |...|++.|+.++.+.+..+.+++    ++......+.   .|..+.+    +..+..||
T Consensus        43 ~~~~vLDlfaGs-G~~gie-alsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~---~d~~~~l----~~~~~~fD  113 (183)
T d2fpoa1          43 VDAQCLDCFAGS-GALGLE-ALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVN---SNAMSFL----AQKGTPHN  113 (183)
T ss_dssp             TTCEEEETTCTT-CHHHHH-HHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEEC---SCHHHHH----SSCCCCEE
T ss_pred             chhhhhhhhccc-cceeee-EEecCcceeEEEEEeechhhHHHHHHhhccccceeeee---ecccccc----cccccccC
Confidence            556788775432 434444 444788889999999988776643    5555433322   2333322    23467899


Q ss_pred             EEEEcCC-CHHHHHHHHHH------hhcCCEEEE
Q 048013          171 VSFDCAG-FNKTMSTALSA------TRAGGKVCL  197 (216)
Q Consensus       171 ~vi~~~g-~~~~~~~~~~~------l~~~G~~v~  197 (216)
                      +||--.+ ........+..      |+++|.+++
T Consensus       114 lIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIii  147 (183)
T d2fpoa1         114 IVFVDPPFRRGLLEETINLLEDNGWLADEALIYV  147 (183)
T ss_dssp             EEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             EEEEcCccccchHHHHHHHHHHCCCCCCCeEEEE
Confidence            9887543 21222333333      566776664

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=92.81  E-value=0.6  Score=31.83  Aligned_cols=101  Identities=22%  Similarity=0.235  Sum_probs=58.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCeEEEE-cC--ChHHHHHHHHcCCCE------E------EeCCC------CcccHH
Q 048013           98 NVLIMGSGPIGLVTMLAARAF-GAPRIVIV-DV--DDYRLSVAKKLGADN------I------VKVST------NLQDIA  155 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~-g~~~vv~~-~~--~~~~~~~~~~~g~~~------~------~~~~~------~~~~~~  155 (216)
                      +|.|.|.|-+|+++.+.+... ..+ ++++ +.  +.+.+.++-++....      +      +.++.      ...+. 
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~-ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p-   80 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVD-IVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP-   80 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSE-EEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG-
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcE-EEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCCh-
Confidence            588999999999999877755 464 5555 42  345555554432110      0      00000      00111 


Q ss_pred             HHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCC
Q 048013          156 EEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHRE  204 (216)
Q Consensus       156 ~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~  204 (216)
                         .++ .....++|+|+||+|--...+.+...+..+.+-++++-+..+
T Consensus        81 ---~~i-~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~~d  125 (169)
T d1u8fo1          81 ---SKI-KWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSAD  125 (169)
T ss_dssp             ---GGC-CTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCSS
T ss_pred             ---hhC-CccccCCCEEEEecceeccHHHHHHHHhcCCceEeecccccc
Confidence               111 013458999999999744445666778877766667655443

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.71  E-value=0.064  Score=37.95  Aligned_cols=30  Identities=30%  Similarity=0.557  Sum_probs=26.4

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      |+|+|+|+.|+.++..+..+|.+ |++++..
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~k-V~vie~~   35 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFK-TTCIEKR   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCC-EEEEECS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCc-EEEEEec
Confidence            68889999999999999999996 8888765

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.62  E-value=0.083  Score=34.35  Aligned_cols=36  Identities=28%  Similarity=0.433  Sum_probs=30.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      +.+++++|+|+|.+|+=+++.++.+|.+ |.++.+.+
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~~-Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGSR-LDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTCE-EEEECSSS
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCCE-EEEEEeec
Confidence            4468999999999999999999999995 88886654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.61  E-value=0.075  Score=37.66  Aligned_cols=31  Identities=19%  Similarity=0.327  Sum_probs=27.1

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      |+|+|+|..|+.++..+...|.+ |.++++++
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~-V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKK-VLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCC-EEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCC-EEEEcCCC
Confidence            78889999999988888889986 99998875

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=92.61  E-value=0.39  Score=34.51  Aligned_cols=86  Identities=8%  Similarity=0.027  Sum_probs=50.3

Q ss_pred             CEEEEEcCCH----HHHHHHHHHHHc--CCCeEEEEcCChHHHH-HHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCc
Q 048013           97 TNVLIMGSGP----IGLVTMLAARAF--GAPRIVIVDVDDYRLS-VAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        97 ~~vlv~Gag~----~G~~~i~~a~~~--g~~~vv~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      =+|.|+|+|.    ++...+...+.+  +++.+-+.+++.++.+ .+++++......++    ++.+.+      ....+
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~----~~~~l~------~~~~i   86 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFD----SLESFA------QYKDI   86 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEES----CHHHHH------HCTTC
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeec----chhhcc------ccccc
Confidence            4788999765    344444445543  4543335688877755 45677765433222    332222      24468


Q ss_pred             cEEEEcCCCHHHHHHHHHHhhcC
Q 048013          170 DVSFDCAGFNKTMSTALSATRAG  192 (216)
Q Consensus       170 d~vi~~~g~~~~~~~~~~~l~~~  192 (216)
                      |+|+.++......+.+..+|..+
T Consensus        87 D~V~i~tp~~~h~~~~~~al~aG  109 (237)
T d2nvwa1          87 DMIVVSVKVPEHYEVVKNILEHS  109 (237)
T ss_dssp             SEEEECSCHHHHHHHHHHHHHHS
T ss_pred             ceeeccCCCcchhhHHHHHHHhc
Confidence            99999888766666666666543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.60  E-value=0.063  Score=34.77  Aligned_cols=36  Identities=19%  Similarity=0.368  Sum_probs=31.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      +.+++++|+|+|-+|+=+++.+..+|.+ |.++.+++
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~~~G~~-Vtvi~~~~   58 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWGRIGSE-VTVVEFAS   58 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHHHHTCE-EEEECSSS
T ss_pred             ccCCeEEEEccchHHHHHHHHHHhcCCe-EEEEEEcc
Confidence            3458899999999999999999999995 88887765

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=92.49  E-value=0.2  Score=36.41  Aligned_cols=34  Identities=26%  Similarity=0.272  Sum_probs=29.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVD  127 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~  127 (216)
                      --.+++|+|.|.|.+|..+++++...|++ |++++
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gak-vv~vs   61 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAK-VIAVS   61 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEee
Confidence            35789999999999999999999999995 66654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=92.44  E-value=0.062  Score=39.34  Aligned_cols=32  Identities=28%  Similarity=0.461  Sum_probs=27.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      +|+|+|+|..|+.++..+...|.+ |+++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~-V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTD-AVLLESSA   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCC-EEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence            488999999999999999999996 89988753

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=92.29  E-value=0.087  Score=36.07  Aligned_cols=29  Identities=31%  Similarity=0.477  Sum_probs=25.6

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDV  128 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~  128 (216)
                      |+|+|+|+.|+.++..+.+.|.+ ++++++
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~~-v~iie~   32 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGIR-TGLMGE   32 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCC-EEEECS
T ss_pred             EEEECcCHHHHHHHHHHHHcCCe-EEEEEE
Confidence            78889999999999999999996 777865

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=92.19  E-value=0.19  Score=33.55  Aligned_cols=39  Identities=33%  Similarity=0.473  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHH
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRL  133 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~  133 (216)
                      ...+|.|+|+|.+|...+..+...| ++.++.+|.++++.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~   43 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRT   43 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchh
Confidence            3568999999999998888777766 45799999998764

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=92.16  E-value=0.089  Score=38.47  Aligned_cols=31  Identities=13%  Similarity=0.225  Sum_probs=26.9

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      |+|+|+|.+|+.++..+...|.+ |+++++.+
T Consensus         7 vvIIGaGi~Gls~A~~La~~G~~-V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGGGIIGSAIAYYLAKENKN-TALFESGT   37 (276)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCC-EEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence            78899999999998888888985 99998754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.11  E-value=0.086  Score=40.08  Aligned_cols=34  Identities=32%  Similarity=0.480  Sum_probs=27.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCh
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDD  130 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~  130 (216)
                      ++|+|+|||..|++++..++..|. ..|++.++++
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            689999999999998877666553 2588888875

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.10  E-value=0.19  Score=33.78  Aligned_cols=38  Identities=24%  Similarity=0.361  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHH
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYR  132 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~  132 (216)
                      |..+|.|+|+|.+|...+.++...+...++.+|.++++
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~   39 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNM   39 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCc
Confidence            45689999999999888888888887789999988765

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=91.99  E-value=0.35  Score=32.53  Aligned_cols=80  Identities=10%  Similarity=0.048  Sum_probs=46.3

Q ss_pred             EEEEEcCCHHHHH-HHHHHHHc-CCCeEEEEcCChHHHH-HHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           98 NVLIMGSGPIGLV-TMLAARAF-GAPRIVIVDVDDYRLS-VAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        98 ~vlv~Gag~~G~~-~i~~a~~~-g~~~vv~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      +|.|+|+|.+|.- .+..++.. +++.+-+.++++++.+ ..++++...   ++    +    +.++.    ..+|+|+-
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~---~~----~----~~~l~----~~~D~V~I   67 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPY---AD----S----LSSLA----ASCDAVFV   67 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCB---CS----S----HHHHH----TTCSEEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccc---cc----c----chhhh----hhcccccc
Confidence            5788999998864 45656554 6654445677776654 445666542   11    1    11221    24777777


Q ss_pred             cCCCHHHHHHHHHHhhcC
Q 048013          175 CAGFNKTMSTALSATRAG  192 (216)
Q Consensus       175 ~~g~~~~~~~~~~~l~~~  192 (216)
                      ++......+.+..+|..+
T Consensus        68 ~tp~~~h~~~~~~al~~g   85 (164)
T d1tlta1          68 HSSTASHFDVVSTLLNAG   85 (164)
T ss_dssp             CSCTTHHHHHHHHHHHTT
T ss_pred             cccchhcccccccccccc
Confidence            777655555555555444

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.94  E-value=0.13  Score=35.94  Aligned_cols=39  Identities=21%  Similarity=0.366  Sum_probs=31.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK  138 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~  138 (216)
                      +|.|+|.|-+|+..+.++ +.|. .|+++|.++++.+.+++
T Consensus         2 kI~ViGlG~vGl~~a~~~-a~g~-~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLL-SLQN-EVTIVDILPSKVDKINN   40 (196)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTS-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCChhHHHHHHHH-HCCC-cEEEEECCHHHHHHHhh
Confidence            578889999999877655 5688 49999999998887753

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=91.88  E-value=1.5  Score=32.90  Aligned_cols=115  Identities=10%  Similarity=0.111  Sum_probs=67.7

Q ss_pred             HHHHHHHc-CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc--CChHHHHHHHHcCCCEEEeCCCCc---------
Q 048013           84 GVHACRRA-NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVD--VDDYRLSVAKKLGADNIVKVSTNL---------  151 (216)
Q Consensus        84 a~~~l~~~-~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~--~~~~~~~~~~~~g~~~~~~~~~~~---------  151 (216)
                      +++.+... .-.+..+|+...+|+.|.+++..++.+|...++++.  .+..+.+.++.+|++.+..-....         
T Consensus        62 a~~~i~~~~~~~~~~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~~~~~  141 (331)
T d1tdja1          62 AYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIEL  141 (331)
T ss_dssp             HHHHHHTTTTSSCSSSCEEEECSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCEEECCCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCeeeecccchhHHHHHHhhccccccceeeccccchhHHHHHHHhcCCEEEEcCcccccchhhhhhh
Confidence            44555433 233445566656799999999999999998555553  335677788889988654211100         


Q ss_pred             ------------cc--H----HHHHHHHHHHcCCCccEEEEcCCCHHHH---HHHHHHhhcCCEEEEec
Q 048013          152 ------------QD--I----AEEVEKIQKAMGTGIDVSFDCAGFNKTM---STALSATRAGGKVCLVG  199 (216)
Q Consensus       152 ------------~~--~----~~~~~~~~~~~~~~~d~vi~~~g~~~~~---~~~~~~l~~~G~~v~~g  199 (216)
                                  .+  .    .....++.+.. ..+|.+|-++|+-..+   ...++.+.++.+++-+-
T Consensus       142 ~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~-~~~D~vv~~~G~GG~~aG~~~~~~~~~~~~~ii~ve  209 (331)
T d1tdja1         142 SQQQGFTWVPPFDHPMVIAGQGTLALELLQQD-AHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVE  209 (331)
T ss_dssp             HHHHCCEECCSSCCHHHHHHHHHHHHHHHHHC-TTCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             hhcCCCccccccCChHHhhhhhhHHHHHHHhc-CCCCEEEEeCChhHHHHHHHHHHHHhCCCcEEEEec
Confidence                        00  0    01112232233 4589999999873333   34445556777777663

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.86  E-value=1.7  Score=31.96  Aligned_cols=60  Identities=22%  Similarity=0.276  Sum_probs=43.9

Q ss_pred             HHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE--cCChHHHHHHHHcCCCEEE
Q 048013           86 HACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIV--DVDDYRLSVAKKLGADNIV  145 (216)
Q Consensus        86 ~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~--~~~~~~~~~~~~~g~~~~~  145 (216)
                      ++++...++++.+++..++|+-|.+++..++.+|.+.++++  ..++.+.+.++.+|+..+.
T Consensus        51 ~a~~~g~~~~~~~vv~assGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~~  112 (302)
T d1fcja_          51 DAEKRGVLKPGVELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVL  112 (302)
T ss_dssp             HHHHHTCCCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             HHHHcCCCCCCceEEEeccccchhHHHHHHHHhccCCceEEeecCcHHHHHHHHHhccceEE
Confidence            34455566777777766789999999999999998855555  3445667778888887653

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=91.84  E-value=0.093  Score=37.06  Aligned_cols=30  Identities=17%  Similarity=0.479  Sum_probs=26.5

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      ++|+|+|+.|+.++..|..+|.+ |.+++++
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~k-V~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQK-CALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCC-EEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCE-EEEEecc
Confidence            68889999999999999999996 8888765

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.81  E-value=0.31  Score=37.84  Aligned_cols=99  Identities=16%  Similarity=0.116  Sum_probs=64.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEE--------eCC----CCcccHHHHHH
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIV--------KVS----TNLQDIAEEVE  159 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~--------~~~----~~~~~~~~~~~  159 (216)
                      +.+||- +.++.|.-.+.+++..|...|++.|.+++..+.+++    .+.....        ...    ....|....+ 
T Consensus        46 ~~~vLD-~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~-  123 (375)
T d2dula1          46 PKIVLD-ALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM-  123 (375)
T ss_dssp             CSEEEE-SSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH-
T ss_pred             CCEEEE-cCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh-
Confidence            445443 545568899999999998889999999998887754    2322110        000    0112222222 


Q ss_pred             HHHHHcCCCccE-EEEcCCC-HHHHHHHHHHhhcCCEEEEec
Q 048013          160 KIQKAMGTGIDV-SFDCAGF-NKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       160 ~~~~~~~~~~d~-vi~~~g~-~~~~~~~~~~l~~~G~~v~~g  199 (216)
                         ...+..||+ .+|..|. ...+..+++.++.+|.+.+-.
T Consensus       124 ---~~~~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         124 ---AERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             ---HHSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---HhhcCcCCcccCCCCCCcHHHHHHHHHHhccCCEEEEEe
Confidence               234567995 6788887 456789999999999887654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.77  E-value=0.047  Score=37.97  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=28.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      ++..|+|+|+|+.|+.++..+.++|.+ ++++++.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~-v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQ-PVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCC-CEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc-eEEEEee
Confidence            456799999999999999999999996 7777654

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.73  E-value=0.084  Score=39.64  Aligned_cols=32  Identities=19%  Similarity=0.467  Sum_probs=27.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      .++|+|||..|+.++..+...|.+ |.+++.++
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~-V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKK-VLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCC-EEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCc-EEEEECCC
Confidence            378999999999999999888986 89998765

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=91.69  E-value=1.5  Score=32.50  Aligned_cols=98  Identities=19%  Similarity=0.240  Sum_probs=60.6

Q ss_pred             EEEc-CCHHHHHHHHHHHHcCCCeEEEE--cCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHH----------------
Q 048013          100 LIMG-SGPIGLVTMLAARAFGAPRIVIV--DVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEK----------------  160 (216)
Q Consensus       100 lv~G-ag~~G~~~i~~a~~~g~~~vv~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------------  160 (216)
                      ++.+ +|+.|.+++..|+.+|.+.++++  ..++.+.+.++.+|++.+..- ...+......++                
T Consensus        72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~-~~~~~~~~~a~~~a~~~g~~~~~~~~~~  150 (318)
T d1v71a1          72 VLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYD-RYKDDREKMAKEISEREGLTIIPPYDHP  150 (318)
T ss_dssp             EEECCSSHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEEC-TTTTCHHHHHHHHHHHHTCBCCCSSSSH
T ss_pred             eeeeccchhhHHHHHhhcccccceeecccccccHHHHHHHHHcCCcEEecc-CCchHHHHHHHHHHHhcCCEecCCcccc
Confidence            4444 69999999999999999855555  334567778889999876532 111122211111                


Q ss_pred             ------------HHHHcCCCccEEEEcCCCHHH---HHHHHHHhhcCCEEEEec
Q 048013          161 ------------IQKAMGTGIDVSFDCAGFNKT---MSTALSATRAGGKVCLVG  199 (216)
Q Consensus       161 ------------~~~~~~~~~d~vi~~~g~~~~---~~~~~~~l~~~G~~v~~g  199 (216)
                                  +.+.. ..+|++|-++|+-..   ....++.+.+..+++-+.
T Consensus       151 ~~~~g~~t~~~Ei~~q~-~~~d~vvv~~G~GG~~~Gi~~~~~~~~~~~~ii~v~  203 (318)
T d1v71a1         151 HVLAGQGTAAKELFEEV-GPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVE  203 (318)
T ss_dssp             HHHHHHTHHHHHHHHHH-CCCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             ccccccchHHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHHhhCCCceeeccc
Confidence                        11122 257999988886333   244556667777777653

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=91.66  E-value=0.79  Score=31.28  Aligned_cols=100  Identities=20%  Similarity=0.177  Sum_probs=52.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCC--eEEEE-cCC-hHHHHHHHHcCCC------EEEe-------CCC------CcccH
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAP--RIVIV-DVD-DYRLSVAKKLGAD------NIVK-------VST------NLQDI  154 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~--~vv~~-~~~-~~~~~~~~~~g~~------~~~~-------~~~------~~~~~  154 (216)
                      +|.|.|.|-+|.++.+.+....-.  .++++ +.. .+...++-++...      .+..       ++.      ...+.
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~~p   81 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNP   81 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCSCG
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCCCh
Confidence            578999999999999877654321  24444 222 2333444333111      1110       000      00111


Q ss_pred             HHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCC
Q 048013          155 AEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH  202 (216)
Q Consensus       155 ~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~  202 (216)
                      .+ + .|   ...++|+|+||+|.-...+.+...|..+.+=|+++-+.
T Consensus        82 ~~-i-~W---~~~gvDiViEcTG~f~~~~~~~~hl~~GakkViiSAP~  124 (172)
T d1rm4a1          82 VN-L-PW---GDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPG  124 (172)
T ss_dssp             GG-S-CH---HHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEESSCC
T ss_pred             HH-C-Ch---hhcCCCEEEecCceEccHHHHHHHHhcCCceEEeeccc
Confidence            10 0 12   12379999999997444456667787776555565444

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.53  E-value=0.13  Score=33.14  Aligned_cols=35  Identities=20%  Similarity=0.278  Sum_probs=30.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      .+++++|+|+|.+|.=++..+..+|.+ |..+.+.+
T Consensus        31 ~~~~vvIiGgG~iG~E~A~~l~~~g~~-Vtlv~~~~   65 (122)
T d1xhca2          31 NSGEAIIIGGGFIGLELAGNLAEAGYH-VKLIHRGA   65 (122)
T ss_dssp             HHSEEEEEECSHHHHHHHHHHHHTTCE-EEEECSSS
T ss_pred             cCCcEEEECCcHHHHHHHHHhhcccce-EEEEeccc
Confidence            347899999999999999999999995 88887764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.45  E-value=0.11  Score=39.06  Aligned_cols=31  Identities=23%  Similarity=0.481  Sum_probs=26.9

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      |+|+|+|..|+.++..++..|.+ |+++++++
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~-V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLN-VVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCC-EEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence            68889999999999999999996 88887643

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=91.42  E-value=0.24  Score=32.98  Aligned_cols=37  Identities=24%  Similarity=0.411  Sum_probs=30.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHH
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRL  133 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~  133 (216)
                      ++|.|+|+|.+|...+..+...| +..++.+|.++++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~   39 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKV   39 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchh
Confidence            57889999999988888777766 45789999998763

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.33  E-value=0.021  Score=41.77  Aligned_cols=45  Identities=24%  Similarity=0.241  Sum_probs=31.8

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH
Q 048013           92 NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK  138 (216)
Q Consensus        92 ~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~  138 (216)
                      ...++++||-+|+|. |...+.+++ .+...|+++|.++..++.+++
T Consensus        48 ~~~~g~~vLDlGcG~-G~~~~~~~~-~~~~~v~giD~S~~~i~~a~~   92 (257)
T d2a14a1          48 GGLQGDTLIDIGSGP-TIYQVLAAC-DSFQDITLSDFTDRNREELEK   92 (257)
T ss_dssp             TSCCEEEEEESSCTT-CCGGGTTGG-GTEEEEEEEESCHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCC-CHhHHHHhc-cccCcEEEecCCHHHHHHHHH
Confidence            456788999999875 544444444 344469999999988887754

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=91.31  E-value=0.12  Score=38.33  Aligned_cols=32  Identities=22%  Similarity=0.339  Sum_probs=26.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      .|+|+|+|.+|++++..+...|.+.|++++++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            48899999999988877777887558888765

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.29  E-value=0.13  Score=36.19  Aligned_cols=30  Identities=33%  Similarity=0.658  Sum_probs=26.1

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      ++|+|+|+.|+.++..|..+|.+ |.++++.
T Consensus         6 viVIG~GpaGl~aA~~aar~G~k-V~vIEk~   35 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQK-VTIVEKG   35 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCE-EEEEecC
Confidence            67889999999999999999996 8888754

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.26  E-value=0.13  Score=36.44  Aligned_cols=31  Identities=39%  Similarity=0.726  Sum_probs=27.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      -++|+|+|+.|+.++..+..+|.+ |.+++..
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~-V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIP-TVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCC-EEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCc-EEEEecC
Confidence            378889999999999999999996 8888764

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.23  E-value=0.16  Score=38.09  Aligned_cols=33  Identities=30%  Similarity=0.398  Sum_probs=29.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVD  127 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~  127 (216)
                      -.+++|+|.|.|.+|..+++++...|++ |++++
T Consensus        34 L~gktvaIqGfGnVG~~~A~~L~e~Gak-vv~vs   66 (293)
T d1hwxa1          34 FGDKTFAVQGFGNVGLHSMRYLHRFGAK-CVAVG   66 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEE
Confidence            3678999999999999999999999995 77664

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=91.21  E-value=0.98  Score=30.75  Aligned_cols=99  Identities=23%  Similarity=0.258  Sum_probs=55.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCeEEEEc-C-ChHHHHHHHHcCCCE--------------------EEeCCCCcccH
Q 048013           98 NVLIMGSGPIGLVTMLAARAF-GAPRIVIVD-V-DDYRLSVAKKLGADN--------------------IVKVSTNLQDI  154 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~-g~~~vv~~~-~-~~~~~~~~~~~g~~~--------------------~~~~~~~~~~~  154 (216)
                      +|.|.|.|-+|.++.+.+... ..+ ++++. . +.+...++-++....                    +.....  .+.
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~-ivaINd~~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~--~~p   79 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIE-VVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAE--RDP   79 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEE-EEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECC--SSG
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcE-EEEEcCCCCHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEec--CCH
Confidence            578899999999998877644 343 55552 1 223344443332111                    101001  111


Q ss_pred             HHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCCC
Q 048013          155 AEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHRE  204 (216)
Q Consensus       155 ~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~  204 (216)
                          .++ .....++|+|+||+|.-...+.+...|..+.+-|+++-+..+
T Consensus        80 ----~~i-~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap~~d  124 (171)
T d3cmco1          80 ----ENL-AWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKN  124 (171)
T ss_dssp             ----GGC-CTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBS
T ss_pred             ----HHc-cccccCCcEEEEecCccCCHHHHHHHHhCCCceEEEeccccc
Confidence                110 012347999999999755556777778877666666655443

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.19  E-value=0.13  Score=38.58  Aligned_cols=44  Identities=16%  Similarity=0.066  Sum_probs=33.0

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChH--HHHHHHHcCC
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDY--RLSVAKKLGA  141 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~--~~~~~~~~g~  141 (216)
                      ++|||+|+ |-+|..++..+...|++ |+++++...  +.+.++.+..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~-V~~~~r~~~~~~~~~l~~~~~   47 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYR-VHGLVARRSSDTRWRLRELGI   47 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCCSSCCCHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCE-EEEEECCCCcccHHHHHHhcc
Confidence            57999996 99999999988888985 888877542  2344555544

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.17  E-value=1.3  Score=29.10  Aligned_cols=36  Identities=17%  Similarity=0.269  Sum_probs=28.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHH
Q 048013           98 NVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRL  133 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~  133 (216)
                      +|.|+|+|.+|...+..+...+ ++.++.+|.++++.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~   38 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLA   38 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchh
Confidence            5778899999988887777666 45789999998763

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=91.13  E-value=0.14  Score=36.51  Aligned_cols=31  Identities=32%  Similarity=0.529  Sum_probs=27.0

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      ++|+|+|+.|+.++..+..+|.+ |+++++.+
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~~-V~viE~~~   39 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGLK-VAIVERYK   39 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCC-EEEEESSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCe-EEEEeccC
Confidence            67889999999999999999996 88887654

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.12  E-value=0.13  Score=36.54  Aligned_cols=30  Identities=33%  Similarity=0.599  Sum_probs=25.7

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      |+|+|+|+.|+.++..|..+|.+ |++++..
T Consensus         8 viVIG~GpAGl~aA~~aa~~G~k-V~lie~~   37 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQLGFN-TACVEKR   37 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCc-EEEEEec
Confidence            67889999999988888889996 8888764

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=91.08  E-value=1.5  Score=29.71  Aligned_cols=40  Identities=20%  Similarity=0.459  Sum_probs=26.6

Q ss_pred             CCCEEEEEcCCHHHHH---HHHHHHH--cCCCeEEEEcCChHHHH
Q 048013           95 PETNVLIMGSGPIGLV---TMLAARA--FGAPRIVIVDVDDYRLS  134 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~---~i~~a~~--~g~~~vv~~~~~~~~~~  134 (216)
                      |+-+|.|+|+|.+|..   ...+++.  +....++.+|.++++.+
T Consensus         1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~   45 (171)
T d1obba1           1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLD   45 (171)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHH
T ss_pred             CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHH
Confidence            4567899999988843   2223332  22336999999988765

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.05  E-value=1.5  Score=29.89  Aligned_cols=86  Identities=15%  Similarity=0.159  Sum_probs=57.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSFD  174 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  174 (216)
                      ++++|.|+|-|.=|++-++-++-.|.+.+|.........+.+++-|... ..       ..+..        ...|++.-
T Consensus        15 k~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v-~~-------~~eA~--------~~aDiim~   78 (182)
T d1np3a2          15 QGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKV-AD-------VKTAV--------AAADVVMI   78 (182)
T ss_dssp             HTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEE-EC-------HHHHH--------HTCSEEEE
T ss_pred             CCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhcccc-cc-------HHHHh--------hhcCeeee
Confidence            4689999999999999999999999975555544344567777777753 22       11221        25899998


Q ss_pred             cCCCHHHHHHHH-----HHhhcCCEEEE
Q 048013          175 CAGFNKTMSTAL-----SATRAGGKVCL  197 (216)
Q Consensus       175 ~~g~~~~~~~~~-----~~l~~~G~~v~  197 (216)
                      .+.+ +.....+     ..|+++-.+.+
T Consensus        79 L~PD-~~q~~vy~~~I~p~lk~g~~L~F  105 (182)
T d1np3a2          79 LTPD-EFQGRLYKEEIEPNLKKGATLAF  105 (182)
T ss_dssp             CSCH-HHHHHHHHHHTGGGCCTTCEEEE
T ss_pred             ecch-HHHHHHHHHhhhhhcCCCcEEEE
Confidence            8887 4333334     34666666553

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.96  E-value=2.3  Score=31.73  Aligned_cols=110  Identities=24%  Similarity=0.238  Sum_probs=66.2

Q ss_pred             HHcCCCCCCEEEEE-cCCHHHHHHHHHHHHcCCCeEEEE--cCChHHHHHHHHcCCCEEEeCCC----------------
Q 048013           89 RRANIGPETNVLIM-GSGPIGLVTMLAARAFGAPRIVIV--DVDDYRLSVAKKLGADNIVKVST----------------  149 (216)
Q Consensus        89 ~~~~~~~~~~vlv~-Gag~~G~~~i~~a~~~g~~~vv~~--~~~~~~~~~~~~~g~~~~~~~~~----------------  149 (216)
                      +...++++...+|. .+|+.|.+.+..++.+|.+.++++  ..+..|++.++.+|+..+.....                
T Consensus        57 ~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi~~~~~~~~~~~~~~~~~~~~~  136 (320)
T d1z7wa1          57 KKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAK  136 (320)
T ss_dssp             HTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHH
T ss_pred             HcCCCCCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhhhhhhhhhhhhccCcceEEeeccccccccchhHHHHHHh
Confidence            34445565555555 579999999999999998744444  44467788889999875543110                


Q ss_pred             -----------CcccHH----HHHHHHHHHcCCCccEEEEcCCCHHHHHH---HHHHhhcCCEEEEe
Q 048013          150 -----------NLQDIA----EEVEKIQKAMGTGIDVSFDCAGFNKTMST---ALSATRAGGKVCLV  198 (216)
Q Consensus       150 -----------~~~~~~----~~~~~~~~~~~~~~d~vi~~~g~~~~~~~---~~~~l~~~G~~v~~  198 (216)
                                 +..++.    ....++.+.....+|.++-++|+-..+.-   .++...+.-+++-+
T Consensus       137 ~~~~~~~~~~~~~~n~~~g~~t~~~EI~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~~~~igv  203 (320)
T d1z7wa1         137 TPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGV  203 (320)
T ss_dssp             CTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             CCCceecccccccchHHHhhhhHHHHHHHhccCCCCEEEeCCCCCcccchhhhhhhhhhcceeeecc
Confidence                       000111    11223333445568999999987444433   33444556666644

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=90.88  E-value=0.45  Score=36.35  Aligned_cols=31  Identities=26%  Similarity=0.315  Sum_probs=25.8

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV  128 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~  128 (216)
                      +|||+|+ |-+|..++..+...|...|+.++.
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            6899996 999999999998889876666654

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.73  E-value=0.42  Score=33.29  Aligned_cols=69  Identities=17%  Similarity=0.251  Sum_probs=41.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCC-eEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           96 ETNVLIMGS-GPIGLVTMLAARAFGAP-RIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a~~~g~~-~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      .++|||+|+ |-+|..+++.+...|.. .|++..+++..       .......   ...++.+    +.+.....+|.+|
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~-------~~~~~~~---~~~d~~~----~~~~~~~~~d~vi   67 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-------EHPRLDN---PVGPLAE----LLPQLDGSIDTAF   67 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-------CCTTEEC---CBSCHHH----HGGGCCSCCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh-------hcccccc---cccchhh----hhhccccchheee
Confidence            378999997 99999999988888863 45555544211       0111111   1123222    2222345689999


Q ss_pred             EcCCC
Q 048013          174 DCAGF  178 (216)
Q Consensus       174 ~~~g~  178 (216)
                      .++|.
T Consensus        68 ~~~g~   72 (212)
T d2a35a1          68 CCLGT   72 (212)
T ss_dssp             ECCCC
T ss_pred             eeeee
Confidence            99876

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.71  E-value=0.13  Score=35.12  Aligned_cols=27  Identities=33%  Similarity=0.511  Sum_probs=24.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCC
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAP  121 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~  121 (216)
                      ++++|+|+|+|.+|.-++..++.+|.+
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~   28 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWE   28 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCc
Confidence            578999999999999999999999986

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=90.62  E-value=0.85  Score=29.13  Aligned_cols=90  Identities=22%  Similarity=0.293  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCCH--HH---------HHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           95 PETNVLIMGSGP--IG---------LVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        95 ~~~~vlv~Gag~--~G---------~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ..++|||+|+|+  +|         ..+++.++..|++ ++.+..|.+....-.. -++.++...-..++    +.++.+
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~-~IliN~NPeTVstd~d-~aD~lYfeplt~e~----v~~Ii~   76 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYE-TIMVNCNPETVSTDYD-TSDRLYFEPVTLED----VLEIVR   76 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCE-EEEECCCTTSSTTSTT-SSSEEECCCCSHHH----HHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCe-EEEEecChhhhhcChh-hcCceEEccCCHHH----HHHHHH
Confidence            457899999864  23         3456667778995 8889888765432111 12333321111222    333321


Q ss_pred             HcCCCccEEEEcCCCHHHHHHHHHHhhcCC
Q 048013          164 AMGTGIDVSFDCAGFNKTMSTALSATRAGG  193 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G  193 (216)
                        ..+.|.++-..|++..+..+.++ ...|
T Consensus        77 --~E~p~~ii~~~GGQtalnla~~L-~~~g  103 (121)
T d1a9xa4          77 --IEKPKGVIVQYGGQTPLKLARAL-EAAG  103 (121)
T ss_dssp             --HHCCSEEECSSSTHHHHTTHHHH-HHTT
T ss_pred             --HhCCCEEEeehhhhhHHHHHHHH-HHcC
Confidence              12689999999997766555554 4444

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=90.61  E-value=0.64  Score=32.49  Aligned_cols=46  Identities=24%  Similarity=0.299  Sum_probs=33.3

Q ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH
Q 048013           91 ANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK  138 (216)
Q Consensus        91 ~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~  138 (216)
                      .+-..|++||-.|+|. |.+++.++ ..|+..|+++|.+++..+.+++
T Consensus        42 ~~dl~g~~vLDlg~Gt-G~l~i~a~-~~g~~~v~~vdi~~~~~~~a~~   87 (201)
T d1wy7a1          42 LGDIEGKVVADLGAGT-GVLSYGAL-LLGAKEVICVEVDKEAVDVLIE   87 (201)
T ss_dssp             TTSSTTCEEEEETCTT-CHHHHHHH-HTTCSEEEEEESCHHHHHHHHH
T ss_pred             cCCCCCCEEEECcCcc-hHHHHHHH-HcCCCEEEEEcCcHHHHHHHHH
Confidence            3445789999998763 44455544 4677679999999988887754

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.61  E-value=0.26  Score=32.89  Aligned_cols=89  Identities=20%  Similarity=0.239  Sum_probs=46.2

Q ss_pred             EEEEEcC-CHHHHHHHHHH-HHc--CCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           98 NVLIMGS-GPIGLVTMLAA-RAF--GAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a-~~~--g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      +|.|+|| |-+|+-.++++ ...  -...++...++........ +........  ...+    ...+     .++|++|
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~-~~~~~~~~~--~~~~----~~~~-----~~~DivF   70 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPS-FGGTTGTLQ--DAFD----LEAL-----KALDIIV   70 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCG-GGTCCCBCE--ETTC----HHHH-----HTCSEEE
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccccc-ccCCceeee--cccc----hhhh-----hcCcEEE
Confidence            6888997 99999999754 332  3334555544432211111 111111110  0011    1112     2699999


Q ss_pred             EcCCCHHHHHHHHHHhhcCC---EEEEec
Q 048013          174 DCAGFNKTMSTALSATRAGG---KVCLVG  199 (216)
Q Consensus       174 ~~~g~~~~~~~~~~~l~~~G---~~v~~g  199 (216)
                      -+++. +..+.....+...|   .++..+
T Consensus        71 ~a~~~-~~s~~~~~~~~~~g~~~~VID~S   98 (146)
T d1t4ba1          71 TCQGG-DYTNEIYPKLRESGWQGYWIDAA   98 (146)
T ss_dssp             ECSCH-HHHHHHHHHHHHTTCCCEEEECS
T ss_pred             EecCc-hHHHHhhHHHHhcCCCeecccCC
Confidence            99998 55566566554444   355555

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=90.57  E-value=0.13  Score=38.86  Aligned_cols=31  Identities=32%  Similarity=0.519  Sum_probs=25.1

Q ss_pred             EEEEcCCHHHHHHHHHHH-----HcCCCeEEEEcCCh
Q 048013           99 VLIMGSGPIGLVTMLAAR-----AFGAPRIVIVDVDD  130 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~-----~~g~~~vv~~~~~~  130 (216)
                      |+|+|+|+.|++++..+.     ..|.+ |+++++.+
T Consensus        10 V~IvGaG~aGl~lA~~La~~~~~~~G~~-v~vlEr~~   45 (360)
T d1pn0a1          10 VLIVGAGPAGLMAARVLSEYVRQKPDLK-VRIIDKRS   45 (360)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHHHSTTCC-EEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHhcccccCCCc-EEEEcCCC
Confidence            788899999998887773     56886 88888764

>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.51  E-value=2.1  Score=33.06  Aligned_cols=50  Identities=18%  Similarity=0.325  Sum_probs=34.9

Q ss_pred             CEEEE-EcCCHHHHHHHHHHHHcCCCeEEEEcC-----ChHHHHHHHHcCCCEEEe
Q 048013           97 TNVLI-MGSGPIGLVTMLAARAFGAPRIVIVDV-----DDYRLSVAKKLGADNIVK  146 (216)
Q Consensus        97 ~~vlv-~Gag~~G~~~i~~a~~~g~~~vv~~~~-----~~~~~~~~~~~g~~~~~~  146 (216)
                      +++++ .++|+-|.+++..|+.+|.+.+|....     ...+...++.+|++.+..
T Consensus       103 ~~iv~easaGN~g~a~A~aaa~~Gl~~~I~mp~~~~~~k~~~v~~m~~~GAeVv~v  158 (390)
T d1qopb_         103 SEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPV  158 (390)
T ss_dssp             CEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEE
T ss_pred             ceeeeehhHHHHHHHHHHHHHhccCceEEeecccccccchHHHHHHHhcCceEEEe
Confidence            44555 367999999999999999974444422     234466678899876543

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.46  E-value=0.27  Score=32.96  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=28.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      -+++|+|+|+|.+|.=.+..+.++|++.|.++.+.
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            46789999999999988888899999867666543

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.46  E-value=1.7  Score=29.35  Aligned_cols=100  Identities=21%  Similarity=0.207  Sum_probs=57.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc-CCCeEEEE-cC--ChHHHHHHHHcCCC------EE-E-----eCCC------CcccHH
Q 048013           98 NVLIMGSGPIGLVTMLAARAF-GAPRIVIV-DV--DDYRLSVAKKLGAD------NI-V-----KVST------NLQDIA  155 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~-g~~~vv~~-~~--~~~~~~~~~~~g~~------~~-~-----~~~~------~~~~~~  155 (216)
                      +|.|.|.|-+|.++.+.+... ..+ ++++ +.  +.+...++-++...      .+ .     .+..      ...+..
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~-iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p~   80 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIE-VVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDPS   80 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEE-EEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSGG
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcE-EEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCChH
Confidence            578999999999999888754 453 5555 32  34556665443211      01 0     0000      011111


Q ss_pred             HHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          156 EEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       156 ~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                      + + .|   ...++|+|+||+|--...+.+...|..+.+-|+++-+..
T Consensus        81 ~-i-~W---~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~k  123 (166)
T d2b4ro1          81 Q-I-PW---GKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPK  123 (166)
T ss_dssp             G-C-CH---HHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCS
T ss_pred             H-c-cc---cccCCCEEEEecccccchhhhhhhhccCCCEEEEecccc
Confidence            1 0 12   123799999999974444667778887776666664443

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=90.34  E-value=0.34  Score=35.47  Aligned_cols=32  Identities=19%  Similarity=0.177  Sum_probs=28.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIV  126 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~  126 (216)
                      -.+++|+|.|.|.+|..+++++...|++ |+++
T Consensus        34 l~g~~v~IQGfGnVG~~~a~~L~e~Gak-vvav   65 (255)
T d1bgva1          34 LVGKTVALAGFGNVAWGAAKKLAELGAK-AVTL   65 (255)
T ss_dssp             STTCEEEECCSSHHHHHHHHHHHHHTCE-EEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEE
Confidence            4789999999999999999999999996 6655

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=90.25  E-value=2.1  Score=30.28  Aligned_cols=94  Identities=12%  Similarity=0.092  Sum_probs=60.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcC------CCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcC
Q 048013           93 IGPETNVLIMGSGPIGLVTMLAARAFG------APRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMG  166 (216)
Q Consensus        93 ~~~~~~vlv~Gag~~G~~~i~~a~~~g------~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (216)
                      ++..++|.|+|-|.-|++-++-++-.|      ...++.........+.+++-|.... +  .......+.+        
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~-~--~~v~~v~EAv--------  109 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEE-N--GTLGDMWETI--------  109 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGG-G--TCEEEHHHHH--------
T ss_pred             hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccC-C--CcccCHHHHH--------
Confidence            344589999999988999999998854      5445566555566778887776521 0  0011222222        


Q ss_pred             CCccEEEEcCCCH---HHHHHHHHHhhcCCEEEE
Q 048013          167 TGIDVSFDCAGFN---KTMSTALSATRAGGKVCL  197 (216)
Q Consensus       167 ~~~d~vi~~~g~~---~~~~~~~~~l~~~G~~v~  197 (216)
                      ...|+|+-.+++.   +.++.....|+++-.+..
T Consensus       110 ~~ADiVmiLlPDe~Q~~vy~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         110 SGSDLVLLLISDSAQADNYEKVFSHMKPNSILGL  143 (226)
T ss_dssp             HTCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             hhCCEEEEecchHHHHHHHHHHHHhcCCCceeee
Confidence            2589999999872   344556667888887765

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.20  E-value=0.52  Score=32.43  Aligned_cols=96  Identities=13%  Similarity=0.043  Sum_probs=57.7

Q ss_pred             CCCCCEEEEEcC--CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCC-EEEeCCCCcccHHHHHHHHHHHc
Q 048013           93 IGPETNVLIMGS--GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGAD-NIVKVSTNLQDIAEEVEKIQKAM  165 (216)
Q Consensus        93 ~~~~~~vlv~Ga--g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~  165 (216)
                      ..++.+||-..+  |.+|+   . |...|+..|+.++.+.+..+.+++    ++.. .+..+   ..|+.+.+.++.. .
T Consensus        39 ~~~~~~vLDlfaGsG~~g~---e-a~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~---~~D~~~~l~~~~~-~  110 (182)
T d2fhpa1          39 YFDGGMALDLYSGSGGLAI---E-AVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVR---KMDANRALEQFYE-E  110 (182)
T ss_dssp             CCSSCEEEETTCTTCHHHH---H-HHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEE---ESCHHHHHHHHHH-T
T ss_pred             hcCCCEEEEcccccccccc---e-eeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccc---cccchhhhhhhcc-c
Confidence            457888888743  56654   3 334788889999999988776643    4543 22221   2355555555432 3


Q ss_pred             CCCccEEEEcCC-C----HHHHHHHHH--HhhcCCEEE
Q 048013          166 GTGIDVSFDCAG-F----NKTMSTALS--ATRAGGKVC  196 (216)
Q Consensus       166 ~~~~d~vi~~~g-~----~~~~~~~~~--~l~~~G~~v  196 (216)
                      +..||+||-..+ .    ...+....+  +|+++|.++
T Consensus       111 ~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi  148 (182)
T d2fhpa1         111 KLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIV  148 (182)
T ss_dssp             TCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEE
Confidence            568999986543 1    233444443  478888665

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=90.20  E-value=0.18  Score=36.92  Aligned_cols=30  Identities=23%  Similarity=0.484  Sum_probs=26.0

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      |+|+|+|.+|+.++..+...|.+ |+++++.
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~-V~viE~~   35 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVK-TLLVDAF   35 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence            78889999999988888889996 8888764

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=90.16  E-value=0.18  Score=37.54  Aligned_cols=31  Identities=26%  Similarity=0.612  Sum_probs=26.7

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      |+|+|+|..|+.++..|...|.+ |+++++..
T Consensus        19 VlVIG~G~aGl~aA~~la~~G~~-V~lvEK~~   49 (308)
T d1y0pa2          19 VVVVGSGGAGFSAAISATDSGAK-VILIEKEP   49 (308)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCC-EEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence            78889999999999888889996 88887653

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.00  E-value=0.18  Score=35.39  Aligned_cols=30  Identities=23%  Similarity=0.581  Sum_probs=25.9

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      ++|+|+|+-|+.++..|...|.+ |.++++.
T Consensus         6 viIIGgGpAGl~aA~~aar~G~~-V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGLK-TALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCC-EEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCe-EEEEecc
Confidence            67889999999999999999996 8888754

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.86  E-value=0.21  Score=35.13  Aligned_cols=30  Identities=30%  Similarity=0.517  Sum_probs=26.0

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      ++|+|+|+.|+.++..+..+|.+ |.+++..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~k-V~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGAR-AAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCE-EEEEecc
Confidence            67789999999999999999996 8888754

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.66  E-value=0.2  Score=34.64  Aligned_cols=31  Identities=23%  Similarity=0.300  Sum_probs=26.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDV  128 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~  128 (216)
                      ..|+|+|+|+.|+.++..+.+.|.+ ++++++
T Consensus         6 ~~VvIIGgGpaGl~aA~~~ar~g~~-v~vie~   36 (192)
T d1vdca1           6 TRLCIVGSGPAAHTAAIYAARAELK-PLLFEG   36 (192)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC-CEEECC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCc-EEEEEe
Confidence            5789999999999988888889996 777764

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.61  E-value=0.19  Score=37.98  Aligned_cols=34  Identities=24%  Similarity=0.201  Sum_probs=29.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 048013           94 GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV  128 (216)
Q Consensus        94 ~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~  128 (216)
                      ...++|||+|+ |-+|..++..+...|.+ |+++|+
T Consensus        14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~-V~~~d~   48 (341)
T d1sb8a_          14 AQPKVWLITGVAGFIGSNLLETLLKLDQK-VVGLDN   48 (341)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcCE-EEEEEC
Confidence            34578999996 99999999999999995 888864

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=89.59  E-value=0.34  Score=32.02  Aligned_cols=37  Identities=24%  Similarity=0.249  Sum_probs=29.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHH
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRL  133 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~  133 (216)
                      ++|.|+|+|.+|...+.++...+...++.+|.++++.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~   38 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVP   38 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccc
Confidence            4788899999998887777766765688899877653

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=89.53  E-value=2.6  Score=31.93  Aligned_cols=103  Identities=18%  Similarity=0.220  Sum_probs=64.8

Q ss_pred             HHcCCCCCCEEEEEcCCHHHHHHHHHH-HHcCCCeEEEEcCChHHHH-HHHHcCCC---EEEeCCCCcccHHHHHHHHHH
Q 048013           89 RRANIGPETNVLIMGSGPIGLVTMLAA-RAFGAPRIVIVDVDDYRLS-VAKKLGAD---NIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        89 ~~~~~~~~~~vlv~Gag~~G~~~i~~a-~~~g~~~vv~~~~~~~~~~-~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      +....+..+++.|+|+|..+...++.. ..++.++|.+.+++.++.+ +++++...   .+...    .+..+.+     
T Consensus       121 ~~LA~~da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~----~s~~eav-----  191 (340)
T d1x7da_         121 QALARPNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRA----SSVAEAV-----  191 (340)
T ss_dssp             HHHSCTTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEEC----SSHHHHH-----
T ss_pred             HHhhccCCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceec----CCHHHHH-----
Confidence            444456678999999998887766644 5578889999999987755 44444321   22221    2222222     


Q ss_pred             HcCCCccEEEEcCCCHHH-HHHHHHHhhcCCEEEEeccCCC
Q 048013          164 AMGTGIDVSFDCAGFNKT-MSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~~~~-~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                         ++.|+++-++.++.. .-.-...++|+-.+..+|...+
T Consensus       192 ---~~ADIi~t~Tas~s~~Pv~~~~~l~pG~hI~aiGs~~p  229 (340)
T d1x7da_         192 ---KGVDIITTVTADKAYATIITPDMLEPGMHLNAVGGDCP  229 (340)
T ss_dssp             ---TTCSEEEECCCCSSEEEEECGGGCCTTCEEEECSCCBT
T ss_pred             ---hcCCceeeccccCCCCcccchhhcCCCCEEeecccchh
Confidence               368999988864210 0011246899999999986444

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.42  E-value=0.19  Score=35.75  Aligned_cols=29  Identities=28%  Similarity=0.587  Sum_probs=25.7

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDV  128 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~  128 (216)
                      ++|+|+|+.|+.++..|..+|.+ |.+++.
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~k-V~viE~   34 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDKK-VMVLDF   34 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCCC-EEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCe-EEEEec
Confidence            68889999999999999999996 888874

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.34  E-value=0.52  Score=31.76  Aligned_cols=38  Identities=21%  Similarity=0.476  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChHHH
Q 048013           96 ETNVLIMGSGPIGLVTMLAARAFGA-PRIVIVDVDDYRL  133 (216)
Q Consensus        96 ~~~vlv~Gag~~G~~~i~~a~~~g~-~~vv~~~~~~~~~  133 (216)
                      ..+|.|+|+|.+|...+..+...|. +.++.+|.++++.
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a   57 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADTDKL   57 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhh
Confidence            3579999999999999888887774 4699999987653

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=89.34  E-value=0.82  Score=32.58  Aligned_cols=46  Identities=22%  Similarity=0.240  Sum_probs=36.6

Q ss_pred             HHHHHHHc-CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           84 GVHACRRA-NIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        84 a~~~l~~~-~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      -+++++.. ..-.+.+|++.|+|..|..++++....+.++++.+|+.
T Consensus        13 ll~a~~~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          13 FLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             HHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHHHhCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            35566543 34467889999999999999999999999999999876

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=89.01  E-value=1.2  Score=32.82  Aligned_cols=94  Identities=20%  Similarity=0.283  Sum_probs=58.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHH----HcCCCEEEeCCCCcccHHHHHHHHHHHcCCCc
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAK----KLGADNIVKVSTNLQDIAEEVEKIQKAMGTGI  169 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (216)
                      +.+.+||-+|+|. |..++.+++...-..|+++|.+++.++.++    .++...+..+..   |+.+.   +   .+..|
T Consensus       107 ~~~~~vlDlGtGS-G~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~---d~~~~---~---~~~~f  176 (274)
T d2b3ta1         107 EQPCRILDLGTGT-GAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQS---DWFSA---L---AGQQF  176 (274)
T ss_dssp             SSCCEEEEETCTT-SHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECC---STTGG---G---TTCCE
T ss_pred             ccccceeeeehhh-hHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeec---ccccc---c---CCCce
Confidence            3456788888653 555566677664336999999998887764    366654433222   22111   1   34589


Q ss_pred             cEEEEcCCC---H----------------------------HHHHHHHHHhhcCCEEEE
Q 048013          170 DVSFDCAGF---N----------------------------KTMSTALSATRAGGKVCL  197 (216)
Q Consensus       170 d~vi~~~g~---~----------------------------~~~~~~~~~l~~~G~~v~  197 (216)
                      |+++.+.+-   .                            ..+..+.+.|+++|.+++
T Consensus       177 DlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l  235 (274)
T d2b3ta1         177 AMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL  235 (274)
T ss_dssp             EEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             eEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE
Confidence            999986431   0                            134556667899998876

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=88.69  E-value=0.24  Score=36.18  Aligned_cols=30  Identities=27%  Similarity=0.583  Sum_probs=23.2

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      +|||+|+ |-+|..++..+...|.  ++++++.
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~--~v~~~~~   32 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGN--LIALDVH   32 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSE--EEEECTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC--EEEEECC
Confidence            5899996 9999999888877664  5666554

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.56  E-value=1.9  Score=31.93  Aligned_cols=47  Identities=26%  Similarity=0.400  Sum_probs=35.0

Q ss_pred             EEEEc-CCHHHHHHHHHHHHcCCCeEEEEcC--ChHHHHHHHHcCCCEEE
Q 048013           99 VLIMG-SGPIGLVTMLAARAFGAPRIVIVDV--DDYRLSVAKKLGADNIV  145 (216)
Q Consensus        99 vlv~G-ag~~G~~~i~~a~~~g~~~vv~~~~--~~~~~~~~~~~g~~~~~  145 (216)
                      -+|.. +|+.|.+++..|+.+|.+.++++..  +++|.+.++.+|+..+.
T Consensus        56 ~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~v~~  105 (319)
T d1p5ja_          56 HFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKV  105 (319)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEE
T ss_pred             EEEEeCCCcHHHHHHHHhhhccccceeccccccccccccccccceecccc
Confidence            34555 6999999999999999985555533  34677788888887554

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=88.51  E-value=1.2  Score=30.14  Aligned_cols=84  Identities=15%  Similarity=0.154  Sum_probs=56.0

Q ss_pred             HHHHHcC-CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHH
Q 048013           86 HACRRAN-IGPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQK  163 (216)
Q Consensus        86 ~~l~~~~-~~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  163 (216)
                      ..++..+ .-.|++++|+|- ..+|.-...++...|+. |+......                     .+..+.+     
T Consensus        26 ~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gat-Vt~~h~~t---------------------~~l~~~~-----   78 (166)
T d1b0aa1          26 TLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCT-TTVTHRFT---------------------KNLRHHV-----   78 (166)
T ss_dssp             HHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCE-EEEECSSC---------------------SCHHHHH-----
T ss_pred             HHHHHcCcccccceEEEEeccccccHHHHHHHHHhhcc-cccccccc---------------------chhHHHH-----
Confidence            3344443 357999999995 67899999999999994 76664322                     1222122     


Q ss_pred             HcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccC
Q 048013          164 AMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG  201 (216)
Q Consensus       164 ~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~  201 (216)
                         +..|+++.++|.+..+.  -..++++..++.+|..
T Consensus        79 ---~~ADivI~a~G~p~~i~--~~~vk~g~vvIDvGi~  111 (166)
T d1b0aa1          79 ---ENADLLIVAVGKPGFIP--GDWIKEGAIVIDVGIN  111 (166)
T ss_dssp             ---HHCSEEEECSCCTTCBC--TTTSCTTCEEEECCCE
T ss_pred             ---hhhhHhhhhccCccccc--ccccCCCcEEEecCce
Confidence               13788998888754432  2356888888888864

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=88.48  E-value=0.25  Score=37.05  Aligned_cols=31  Identities=39%  Similarity=0.692  Sum_probs=26.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      -|+|+|+|..|+.++..|...|++ |+++++.
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~~-V~vlEK~   51 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGAN-VILVDKA   51 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCC-EEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence            378889999999998888889996 8888764

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.44  E-value=0.56  Score=30.80  Aligned_cols=37  Identities=35%  Similarity=0.504  Sum_probs=28.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChHHHH
Q 048013           98 NVLIMGSGPIGLVTMLAARAFG-APRIVIVDVDDYRLS  134 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g-~~~vv~~~~~~~~~~  134 (216)
                      +|.|+|+|.+|...+..+...+ +..++.+|.++++.+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~   39 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAE   39 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccccccc
Confidence            5778899999988877776666 346999999987643

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.27  E-value=0.25  Score=37.27  Aligned_cols=33  Identities=24%  Similarity=0.106  Sum_probs=27.5

Q ss_pred             CEE-EEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           97 TNV-LIMGS-GPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        97 ~~v-lv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      ++| ||+|+ |-+|..++..+...|++ |+++++..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~-V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYE-VHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCE-EEEEECCC
Confidence            356 99996 89999999999989995 99988753

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.22  E-value=0.28  Score=36.69  Aligned_cols=31  Identities=26%  Similarity=0.316  Sum_probs=26.7

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV  128 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~  128 (216)
                      ++|||+|+ |-+|..++..+...|.+ |+++++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~-V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHE-VTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeC
Confidence            57999996 99999999999889985 888865

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=88.07  E-value=2.3  Score=28.97  Aligned_cols=98  Identities=12%  Similarity=0.135  Sum_probs=51.8

Q ss_pred             CCCCCEEEEEcC--CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCcc
Q 048013           93 IGPETNVLIMGS--GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGID  170 (216)
Q Consensus        93 ~~~~~~vlv~Ga--g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  170 (216)
                      ++++.+|+-+|+  |+=-+.+.+..  .....++.+|..+-+     .......+.-+..+.+..+.+...  ....++|
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~--~~~~~v~~vDl~~~~-----~i~~~~~~~~d~~~~~~~~~~~~~--~~~~~~D   90 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQI--GGKGRIIACDLLPMD-----PIVGVDFLQGDFRDELVMKALLER--VGDSKVQ   90 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHH--CTTCEEEEEESSCCC-----CCTTEEEEESCTTSHHHHHHHHHH--HTTCCEE
T ss_pred             cCCCCeEEEEeccCCcceEEEEeec--cccceEEEeeccccc-----ccCCceEeecccccchhhhhhhhh--ccCccee
Confidence            588999999996  44323333222  233468888866421     121222222222222222222222  2456799


Q ss_pred             EEEEc-----CCCH------------HHHHHHHHHhhcCCEEEEec
Q 048013          171 VSFDC-----AGFN------------KTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       171 ~vi~~-----~g~~------------~~~~~~~~~l~~~G~~v~~g  199 (216)
                      +|+.-     +|..            ..+..+.+.|+++|.++.==
T Consensus        91 lVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~  136 (180)
T d1ej0a_          91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV  136 (180)
T ss_dssp             EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence            98863     3332            23466778899999888543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.63  E-value=0.29  Score=34.67  Aligned_cols=33  Identities=24%  Similarity=0.358  Sum_probs=26.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHc--CCCeEEEEcCCh
Q 048013           97 TNVLIMGSGPIGLVTMLAARAF--GAPRIVIVDVDD  130 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~--g~~~vv~~~~~~  130 (216)
                      .+|+|+|+|+.|+.++..+...  |+ .|+++++.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~-~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQL   36 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCC
Confidence            3789999999999998866554  66 488888775

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=87.60  E-value=0.3  Score=36.56  Aligned_cols=31  Identities=35%  Similarity=0.698  Sum_probs=26.6

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      |+|+|+|..|+.++..|...|++ |+++++..
T Consensus        26 VvVIG~G~aGl~aA~~la~~G~~-V~llEk~~   56 (322)
T d1d4ca2          26 VVIIGSGGAGLAAAVSARDAGAK-VILLEKEP   56 (322)
T ss_dssp             EEEECSSHHHHHHHHHHHTTTCC-EEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence            88899999999988888889996 88887653

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=87.26  E-value=2.9  Score=28.04  Aligned_cols=72  Identities=15%  Similarity=0.222  Sum_probs=40.6

Q ss_pred             CCEEEEEcCCHHHH--HHHHHHHHc-C--CCeEEEEcCChHHHHHH--------HHcCCCEEEeCCCCcccHHHHHHHHH
Q 048013           96 ETNVLIMGSGPIGL--VTMLAARAF-G--APRIVIVDVDDYRLSVA--------KKLGADNIVKVSTNLQDIAEEVEKIQ  162 (216)
Q Consensus        96 ~~~vlv~Gag~~G~--~~i~~a~~~-g--~~~vv~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~  162 (216)
                      .-+|.|+|+|++|.  +...+++.. .  ...++.+|.++++.+..        ..++....+...   .+..+.   + 
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~ea---l-   75 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT---TDPEEA---F-   75 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE---SCHHHH---H-
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec---CChhhc---c-
Confidence            44688889876653  333444432 2  23699999999886522        223443222211   122221   1 


Q ss_pred             HHcCCCccEEEEcCCC
Q 048013          163 KAMGTGIDVSFDCAGF  178 (216)
Q Consensus       163 ~~~~~~~d~vi~~~g~  178 (216)
                          .+.|+|+.++|.
T Consensus        76 ----~~AD~Vvitag~   87 (167)
T d1u8xx1          76 ----TDVDFVMAHIRV   87 (167)
T ss_dssp             ----SSCSEEEECCCT
T ss_pred             ----CCCCEEEECCCc
Confidence                379999999985

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=87.24  E-value=0.3  Score=35.86  Aligned_cols=33  Identities=21%  Similarity=0.477  Sum_probs=25.9

Q ss_pred             CEEEEEcCCHHHHHHHHH-HHHcCCCeEEEEcCCh
Q 048013           97 TNVLIMGSGPIGLVTMLA-ARAFGAPRIVIVDVDD  130 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~-a~~~g~~~vv~~~~~~  130 (216)
                      .-|+|+|+|+.|+.++.. ++..|.+ |.++++.+
T Consensus        34 ~DViVIGaGpaGL~aA~~LA~~~G~~-V~vlE~~~   67 (278)
T d1rp0a1          34 TDVVVVGAGSAGLSAAYEISKNPNVQ-VAIIEQSV   67 (278)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSC-EEEEESSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHccCCe-EEEEecCC
Confidence            348889999999987765 5557996 89998764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.08  E-value=1.9  Score=27.51  Aligned_cols=61  Identities=20%  Similarity=0.298  Sum_probs=45.2

Q ss_pred             HHHHHcCCCCCCEEEEE-cCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEe
Q 048013           86 HACRRANIGPETNVLIM-GSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVK  146 (216)
Q Consensus        86 ~~l~~~~~~~~~~vlv~-Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~  146 (216)
                      ..++..++..-+.++.. ..-..=+++.+.++.+|..++++...+.+..+.++++|++.+++
T Consensus        56 ~~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d~vi~  117 (132)
T d1lssa_          56 KTLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVS  117 (132)
T ss_dssp             HHHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEEC
T ss_pred             hhhhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCCEEEC
Confidence            35566777776666554 23344567778889999888888888888888999999998775

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=87.05  E-value=0.17  Score=35.15  Aligned_cols=91  Identities=15%  Similarity=0.143  Sum_probs=50.7

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      +|.|+|+ |-+|+-.++++...-.-.+..+..+...-+...+    +............ +          ..-.+.|++
T Consensus         7 kVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~Dvv   75 (183)
T d2cvoa1           7 RIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVK-D----------ADFSNVDAV   75 (183)
T ss_dssp             EEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGG-G----------CCGGGCSEE
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhh-h----------hhhccccee
Confidence            5789997 9999999999987532134444333221111111    1111100000000 0          012469999


Q ss_pred             EEcCCCHHHHHHHHHHhhcCCEEEEecc
Q 048013          173 FDCAGFNKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       173 i~~~g~~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      |.+++. .........+...+..+....
T Consensus        76 f~alp~-~~s~~~~~~l~~~~~~v~~~~  102 (183)
T d2cvoa1          76 FCCLPH-GTTQEIIKGLPQELKIVDLSA  102 (183)
T ss_dssp             EECCSS-SHHHHHHHTSCSSCEEEECSS
T ss_pred             eecccc-chHHHHHHHHHhcCcccccch
Confidence            999998 555666677888888776653

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=87.02  E-value=0.31  Score=33.05  Aligned_cols=24  Identities=38%  Similarity=0.524  Sum_probs=19.7

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc-CCC
Q 048013           98 NVLIMGS-GPIGLVTMLAARAF-GAP  121 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~-g~~  121 (216)
                      +|.|+|+ |-||+++++++... ++.
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~~   31 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGVQ   31 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCE
Confidence            5788896 99999999998875 554

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.95  E-value=0.47  Score=34.22  Aligned_cols=33  Identities=24%  Similarity=0.447  Sum_probs=27.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHH-HHcCCCeEEEEc
Q 048013           94 GPETNVLIMGSGPIGLVTMLAA-RAFGAPRIVIVD  127 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a-~~~g~~~vv~~~  127 (216)
                      ..+.+|+|.|.|.+|..+++.+ +..|++ +++++
T Consensus        29 l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~-vv~vs   62 (234)
T d1b26a1          29 PKKATVAVQGFGNVGQFAALLISQELGSK-VVAVS   62 (234)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHHCCE-EEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCCc-eEEee
Confidence            4688999999999999999887 567995 66654

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=86.92  E-value=0.41  Score=34.67  Aligned_cols=30  Identities=20%  Similarity=0.451  Sum_probs=26.2

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      ++|+|+|+.|+.++..|..+|.+ |.++++.
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~-V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAK-VALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence            67889999999999999999996 8888864

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=86.80  E-value=0.35  Score=36.27  Aligned_cols=31  Identities=23%  Similarity=0.446  Sum_probs=26.4

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      |+|+|+|..|+.++.-|...|++ |++++...
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~~-V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGLS-TIVLSLIP   38 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCC-EEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCC-EEEEecCC
Confidence            78889999999998888889996 88887653

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.73  E-value=0.28  Score=38.75  Aligned_cols=34  Identities=26%  Similarity=0.485  Sum_probs=29.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      .+|||+|+|++|.-+++.+...|...+.++|.+.
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            5699999999999999999999998888887653

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.70  E-value=0.38  Score=31.85  Aligned_cols=91  Identities=15%  Similarity=0.123  Sum_probs=49.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcC--CCeEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFG--APRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g--~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      -+|.|+|+ |-+|+-.++++...+  ...+..+.++...-+... +........     +..       ...-.+.|++|
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~-~~~~~~~~~-----~~~-------~~~~~~~d~vf   69 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG-FAESSLRVG-----DVD-------SFDFSSVGLAF   69 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE-ETTEEEECE-----EGG-------GCCGGGCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCccee-eccccchhc-----cch-------hhhhccceEEE
Confidence            36889997 999999999997543  223555443322111111 111111110     000       01224689999


Q ss_pred             EcCCCHHHHHHHHHHhhcCCEEEEecc
Q 048013          174 DCAGFNKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       174 ~~~g~~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      -+++.....+..-+....+.+++..+.
T Consensus        70 ~a~p~~~s~~~~~~~~~~g~~VID~Ss   96 (144)
T d2hjsa1          70 FAAAAEVSRAHAERARAAGCSVIDLSG   96 (144)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEETTC
T ss_pred             ecCCcchhhhhccccccCCceEEeech
Confidence            999984443444455566777777763

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.67  E-value=3.2  Score=27.79  Aligned_cols=91  Identities=10%  Similarity=0.036  Sum_probs=51.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC--CC-eEEEEcCChH---------------HHHHHHHcCCCEEEeCCCCcccHHHHHH
Q 048013           98 NVLIMGSGPIGLVTMLAARAFG--AP-RIVIVDVDDY---------------RLSVAKKLGADNIVKVSTNLQDIAEEVE  159 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g--~~-~vv~~~~~~~---------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~  159 (216)
                      .|.+.|.|.+|..+++.+....  .+ +++.+..+..               ..+........         ....+.+.
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~---------~~~~~~~~   76 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTK---------TLPLDDLI   76 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCB---------CCCHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccc---------cccHHHHH
Confidence            4678899999999998877643  22 3444322111               11111111111         11111222


Q ss_pred             HHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEe
Q 048013          160 KIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV  198 (216)
Q Consensus       160 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~  198 (216)
                      ++. ......++++|++++.+........|..+-.+|+.
T Consensus        77 ~~~-~~~~~~~vivd~t~~~~~~~~~~~aL~~G~hVVTA  114 (168)
T d1ebfa1          77 AHL-KTSPKPVILVDNTSSAYIAGFYTKFVENGISIATP  114 (168)
T ss_dssp             HHH-TTCSSCEEEEECSCCHHHHTTHHHHHHTTCEEECC
T ss_pred             HHh-ccCCCceEEEEecCChHHHHHHHHHHHcCCeEEec
Confidence            222 12345789999999977777777788888777754

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.58  E-value=0.22  Score=35.31  Aligned_cols=34  Identities=15%  Similarity=0.252  Sum_probs=26.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCC------eEEEEcCCh
Q 048013           97 TNVLIMGSGPIGLVTMLAARAFGAP------RIVIVDVDD  130 (216)
Q Consensus        97 ~~vlv~Gag~~G~~~i~~a~~~g~~------~vv~~~~~~  130 (216)
                      .+|+|+|+|+.|++++..+...|..      .|.+.++.+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            4799999999999999888777631      378887765

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.69  E-value=0.91  Score=28.51  Aligned_cols=37  Identities=19%  Similarity=0.275  Sum_probs=27.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCC--eEEEEcCCh
Q 048013           94 GPETNVLIMGSGPIGLVTMLAARAFGAP--RIVIVDVDD  130 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~~~g~~--~vv~~~~~~  130 (216)
                      +.+++++|+|+|.+|.=.+..+..++.+  .|..+.+.+
T Consensus        18 ~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          18 EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             hcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            3457999999999998888777776643  477776643

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=85.67  E-value=1.4  Score=30.05  Aligned_cols=88  Identities=18%  Similarity=0.185  Sum_probs=45.8

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH----cCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEE
Q 048013           98 NVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK----LGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVS  172 (216)
Q Consensus        98 ~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  172 (216)
                      +|.|+|+ |-+|.-.++++...-.-.+..+..+...-+.+.+    +-....  .  ...+..+ +.       ...|++
T Consensus         3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~--~--~~~~~~~-~~-------~~~dvv   70 (176)
T d1vkna1           3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSI--L--SEFDPEK-VS-------KNCDVL   70 (176)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCB--C--BCCCHHH-HH-------HHCSEE
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhcccc--c--cccCHhH-hc-------cccceE
Confidence            5788997 9999999998886432234444333221111211    111111  1  1112211 11       159999


Q ss_pred             EEcCCCHHHHHHHHHHhhcCCEEEEec
Q 048013          173 FDCAGFNKTMSTALSATRAGGKVCLVG  199 (216)
Q Consensus       173 i~~~g~~~~~~~~~~~l~~~G~~v~~g  199 (216)
                      |-+++. ...+..... ..+.+++..+
T Consensus        71 f~a~p~-~~s~~~~~~-~~~~~VIDlS   95 (176)
T d1vkna1          71 FTALPA-GASYDLVRE-LKGVKIIDLG   95 (176)
T ss_dssp             EECCST-THHHHHHTT-CCSCEEEESS
T ss_pred             EEcccc-HHHHHHHHh-hccceEEecC
Confidence            999998 333443333 2455777765

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.64  E-value=0.45  Score=36.83  Aligned_cols=32  Identities=25%  Similarity=0.495  Sum_probs=24.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHH------cCCCeEEEEcCCh
Q 048013           98 NVLIMGSGPIGLVTMLAARA------FGAPRIVIVDVDD  130 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~------~g~~~vv~~~~~~  130 (216)
                      -|+|+|+|+.|+.++..+..      .|.+ |.++++..
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~-VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLR-VCLVEKAA   71 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCC-EEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCE-EEEEcCCC
Confidence            37788999999887655543      6886 99998764

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.41  E-value=0.62  Score=33.67  Aligned_cols=32  Identities=25%  Similarity=0.315  Sum_probs=26.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEE
Q 048013           94 GPETNVLIMGSGPIGLVTMLAAR-AFGAPRIVIV  126 (216)
Q Consensus        94 ~~~~~vlv~Gag~~G~~~i~~a~-~~g~~~vv~~  126 (216)
                      -++++|+|.|.|.+|..+++++. ..|++ |+.+
T Consensus        30 l~g~~v~IqGfGnVG~~~a~~L~~~~G~k-vv~v   62 (239)
T d1gtma1          30 LKGKTIAIQGYGNAGYYLAKIMSEDFGMK-VVAV   62 (239)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCCE-EEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCcc-eeec
Confidence            47899999999999999998775 57885 6555

>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Thermus thermophilus [TaxId: 274]

Probab=85.28  E-value=4.1  Score=29.88  Aligned_cols=51  Identities=22%  Similarity=0.345  Sum_probs=36.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC--ChHHHHHHHHcCCCEEE
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDV--DDYRLSVAKKLGADNIV  145 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~--~~~~~~~~~~~g~~~~~  145 (216)
                      ....|+...+|+.|.+++..|+.+|.+.++++..  ++++.+.++.+|+..+.
T Consensus        63 ~~~~vv~aSsGN~g~a~A~~aa~~G~~~~i~vp~~~~~~~~~~~~~~Ga~vi~  115 (310)
T d1ve5a1          63 NPKGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVD  115 (310)
T ss_dssp             SCCCEEEECSSHHHHHHHHHHHHHTCCEEEECCCC--CCHHHHHHHTTCEEEC
T ss_pred             ccCCccccCchhhHHHHHHHHHHcCCeEEEeecccchHHHHHHHhhhccccce
Confidence            3444555567999999999999999985555543  34677788888887654

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=85.26  E-value=0.72  Score=30.72  Aligned_cols=91  Identities=20%  Similarity=0.196  Sum_probs=51.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCC--eEEEEcCChHHHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCCCccEEE
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAP--RIVIVDVDDYRLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGTGIDVSF  173 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~--~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi  173 (216)
                      -+|.|+|+ |-+|.-.++++......  .+..+..+ +...................+            ......|++|
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~-~s~G~~~~~~~~~~~~~~~~~------------~~~~~~d~~f   68 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASA-RSAGKSLKFKDQDITIEETTE------------TAFEGVDIAL   68 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECG-GGTTCEEEETTEEEEEEECCT------------TTTTTCSEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccc-ccccccccccCCcccccccch------------hhhhhhhhhh
Confidence            36889997 99999999999876432  33333322 211110011111111110111            1234689999


Q ss_pred             EcCCCHHHHHHHHHHhhcCCEEEEecc
Q 048013          174 DCAGFNKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       174 ~~~g~~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                      -+.+.....+..-+....+.+++..+.
T Consensus        69 ~~~~~~~s~~~~~~~~~~~~~VIDlSs   95 (154)
T d2gz1a1          69 FSAGSSTSAKYAPYAVKAGVVVVDNTS   95 (154)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred             hccCccchhhHHhhhccccceehhcCh
Confidence            999985555566667777889998874

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=85.10  E-value=3.2  Score=31.01  Aligned_cols=62  Identities=18%  Similarity=0.091  Sum_probs=39.9

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC---hHHHHHHHHcCCCEEE
Q 048013           84 GVHACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVD---DYRLSVAKKLGADNIV  145 (216)
Q Consensus        84 a~~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~---~~~~~~~~~~g~~~~~  145 (216)
                      +++++........+.++...+|+.|.+++.+|..+|.+.++++..+   .++...++.+|++.+.
T Consensus        65 a~~~i~~a~~~g~~~iv~~SsGN~g~a~a~~a~~~g~~~~i~~p~~~~~~~~~~~~~~~Ga~vi~  129 (351)
T d1v7ca_          65 MTLAVSKAVEGGAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQ  129 (351)
T ss_dssp             HHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTCSCHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHhcCCCeeeeeccccHHHHHHHHHhhhcccceeecCCchHHHHHHHhhhcCCCceEe
Confidence            3444433322345566555679999999999999998745555332   3455667888987654

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=84.84  E-value=0.6  Score=33.77  Aligned_cols=31  Identities=29%  Similarity=0.387  Sum_probs=26.2

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      ++|+|+|+.|+.++..+..+|.+ +++++..+
T Consensus        45 vvVIGgG~aG~~aA~~~a~~G~k-v~vve~~~   75 (261)
T d1mo9a1          45 AIFIGGGAAGRFGSAYLRAMGGR-QLIVDRWP   75 (261)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCC-EEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCe-EEEEeccC
Confidence            78889999999999999999996 77776643

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=84.84  E-value=0.68  Score=29.07  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=25.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHc---CCCeEEEEcCCh
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAF---GAPRIVIVDVDD  130 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~---g~~~vv~~~~~~  130 (216)
                      .+++++|+|+|.+|.=.+..+..+   |.+ |..+.+.+
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~-Vtli~~~~   54 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGGQ-VDLAYRGD   54 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCE-EEEEESSS
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhcccccc-cceecccc
Confidence            358999999999998877765554   664 77776653

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=84.75  E-value=5.8  Score=29.80  Aligned_cols=31  Identities=39%  Similarity=0.488  Sum_probs=23.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHH-HHcCCCeEEEEc
Q 048013           96 ETNVLIMGS-GPIGLVTMLAA-RAFGAPRIVIVD  127 (216)
Q Consensus        96 ~~~vlv~Ga-g~~G~~~i~~a-~~~g~~~vv~~~  127 (216)
                      +.+|||+|+ |-+|..++..+ +..|. .|+++|
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~-~V~~~D   34 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNH-SVVIVD   34 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC-EEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence            457999996 99998777655 55777 488886

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=84.73  E-value=1.1  Score=32.47  Aligned_cols=29  Identities=31%  Similarity=0.505  Sum_probs=24.2

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcCCCeEEEEc
Q 048013           99 VLIMGS-GPIGLVTMLAARAFGAPRIVIVD  127 (216)
Q Consensus        99 vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~  127 (216)
                      |||+|+ |-+|..++..+...|.+.|+++|
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d   31 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVD   31 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEE
Confidence            789985 99999999888888975588875

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.59  E-value=4.5  Score=27.73  Aligned_cols=101  Identities=19%  Similarity=0.234  Sum_probs=55.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC---CC-eEEE-EcC--ChHHHHHHHHcCCCEE--------------------EeCCC-
Q 048013           98 NVLIMGSGPIGLVTMLAARAFG---AP-RIVI-VDV--DDYRLSVAKKLGADNI--------------------VKVST-  149 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g---~~-~vv~-~~~--~~~~~~~~~~~g~~~~--------------------~~~~~-  149 (216)
                      +|.|.|.|-+|.++.+.+...+   -. .++. .+.  +.+...++-++...+.                    ..+.. 
T Consensus         4 kigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlkyDSvhG~~~~~v~~~~~~~~~~~~~~~i~~g~   83 (190)
T d1k3ta1           4 KVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVNGH   83 (190)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHHEETTTEECSSCEEEECSSTTCSSCCEEEETTE
T ss_pred             EEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhhccccccCCCceEEEccCccccccccceEEcCc
Confidence            5789999999999998765432   22 2333 333  4566666655421110                    00000 


Q ss_pred             ------CcccHHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEeccCCC
Q 048013          150 ------NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHR  203 (216)
Q Consensus       150 ------~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  203 (216)
                            ...+..+ + .|   ...++|+|+||+|.-...+.+...+..+.+-|+++-+..
T Consensus        84 ~i~~~~~~~~p~~-i-~W---~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~  138 (190)
T d1k3ta1          84 RILCVKAQRNPAD-L-PW---GKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPAS  138 (190)
T ss_dssp             EEEEEECCSCGGG-S-CH---HHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred             eEEecccCCChhH-C-CH---hhcCCcEEEEecccccccccchhhcccCcceeeeccCCc
Confidence                  0011111 0 12   123799999999964445667778887766666665443

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.19  E-value=2.1  Score=28.95  Aligned_cols=92  Identities=11%  Similarity=0.066  Sum_probs=56.5

Q ss_pred             cchhhHHH-HHHHHHcCC-CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEeCCCCccc
Q 048013           77 MCEPLSVG-VHACRRANI-GPETNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVKVSTNLQD  153 (216)
Q Consensus        77 ~~~~~~~a-~~~l~~~~~-~~~~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  153 (216)
                      ++++...| +..++..++ -.|++|+|+|. ..+|.-++.++...|+. |.........+.                   
T Consensus        18 ~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gat-Vt~~~~~t~~l~-------------------   77 (170)
T d1a4ia1          18 FIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNAT-VTTCHSKTAHLD-------------------   77 (170)
T ss_dssp             CCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCE-EEEECTTCSSHH-------------------
T ss_pred             CCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHhccCc-eEEEecccccHH-------------------
Confidence            34443333 233444443 47899999995 67899999999999984 776654322111                   


Q ss_pred             HHHHHHHHHHHcCCCccEEEEcCCCHHHHHHHHHHhhcCCEEEEecc
Q 048013          154 IAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM  200 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~  200 (216)
                            +.    -+..|+++.++|.+..+.  -..++++-.++.+|.
T Consensus        78 ------~~----~~~aDivi~a~G~~~~i~--~~~vk~g~iviDvgi  112 (170)
T d1a4ia1          78 ------EE----VNKGDILVVATGQPEMVK--GEWIKPGAIVIDCGI  112 (170)
T ss_dssp             ------HH----HTTCSEEEECCCCTTCBC--GGGSCTTCEEEECCC
T ss_pred             ------HH----Hhhccchhhccccccccc--cccccCCCeEeccCc
Confidence                  11    124777777777644322  235677777777775

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.95  E-value=0.74  Score=32.30  Aligned_cols=30  Identities=27%  Similarity=0.541  Sum_probs=23.6

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDV  128 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~  128 (216)
                      ++|+|+|+-|+.++..+..+|.++|.+++.
T Consensus         6 viIIG~GpaGl~aA~~aa~~g~k~V~iie~   35 (238)
T d1aoga1           6 LVVIGAGSGGLEAAWNAATLYKKRVAVIDV   35 (238)
T ss_dssp             EEEECCSHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEEEe
Confidence            678899999998888777778765777654

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.76  E-value=0.8  Score=34.10  Aligned_cols=113  Identities=12%  Similarity=0.069  Sum_probs=58.0

Q ss_pred             HHHHHHHcC-CCCCCEEEEEcCCHHHHHHHHHHHHc----CC------CeEEEEcCCh----HHHHHH---HHcCCCEEE
Q 048013           84 GVHACRRAN-IGPETNVLIMGSGPIGLVTMLAARAF----GA------PRIVIVDVDD----YRLSVA---KKLGADNIV  145 (216)
Q Consensus        84 a~~~l~~~~-~~~~~~vlv~Gag~~G~~~i~~a~~~----g~------~~vv~~~~~~----~~~~~~---~~~g~~~~~  145 (216)
                      -.++++..+ --.+.+|++.|+|.-|..++.++...    |.      ++++.+|+.-    ++.+.+   ++.-+..  
T Consensus        12 linAlki~gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~--   89 (294)
T d1pj3a1          12 LLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHS--   89 (294)
T ss_dssp             HHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBC--
T ss_pred             HHHHHHHhCCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhcc--
Confidence            356665533 33567899999987776666665543    32      2588887642    111111   1111110  


Q ss_pred             eCCCCcccHHHHHHHHHHHcCCCccEEEEcCCCHH-HHHHHHHHh---hcCCEEEEeccCCCC
Q 048013          146 KVSTNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK-TMSTALSAT---RAGGKVCLVGMGHRE  204 (216)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~~l---~~~G~~v~~g~~~~~  204 (216)
                      +......++.+.++.+      +.|++|-+++... ..+..++.|   .+.=.++-++.+.+.
T Consensus        90 ~~~~~~~~L~e~i~~~------kptvliG~S~~~g~ft~evi~~Ma~~~~~PIIFaLSNPt~~  146 (294)
T d1pj3a1          90 APESIPDTFEDAVNIL------KPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNPTAQ  146 (294)
T ss_dssp             CCSSCCSSHHHHHHHH------CCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECCSSGGG
T ss_pred             ccccchhHHHHHHHhc------CCceEEEecCCCCcCCHHHHHHHHhcCCCcEEEEccCCCCc
Confidence            1111112444545443      6888888886422 224455444   455566666655543

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=83.09  E-value=1.3  Score=33.11  Aligned_cols=113  Identities=12%  Similarity=0.103  Sum_probs=55.4

Q ss_pred             HHHHHHc-CCCCCCEEEEEcCCHHHHHHHHHHHHc----CC------CeEEEEcCCh----HHHHHHHHcCCCEEEeCCC
Q 048013           85 VHACRRA-NIGPETNVLIMGSGPIGLVTMLAARAF----GA------PRIVIVDVDD----YRLSVAKKLGADNIVKVST  149 (216)
Q Consensus        85 ~~~l~~~-~~~~~~~vlv~Gag~~G~~~i~~a~~~----g~------~~vv~~~~~~----~~~~~~~~~g~~~~~~~~~  149 (216)
                      +++++.. +.-.+.+|++.|+|.-|..++.++...    |.      ++++.+|+.-    ++.+ +.........+. .
T Consensus        13 inAlki~gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d-~~~~k~~~a~~~-~   90 (308)
T d1o0sa1          13 LTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKE-MNPRHVQFAKDM-P   90 (308)
T ss_dssp             HHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSS-CCGGGTTTCBSS-C
T ss_pred             HHHHHHhCCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcc-cCHHHHHHHHhc-c
Confidence            5566543 333567899999987776666555432    32      2478887542    1111 000000000011 1


Q ss_pred             CcccHHHHHHHHHHHcCCCccEEEEcCCCHH-HHHHHHHHh---hcCCEEEEeccCCCCC
Q 048013          150 NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNK-TMSTALSAT---RAGGKVCLVGMGHREM  205 (216)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~~l---~~~G~~v~~g~~~~~~  205 (216)
                      ...+..+.++.+      +.+++|.+++... ..+..++.|   .+.-.++-++.+.+..
T Consensus        91 ~~~~l~~~i~~~------kptvliG~s~~~g~ft~evv~~Ma~~~~~PIIFaLSNPtp~~  144 (308)
T d1o0sa1          91 ETTSILEVIRAA------RPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKA  144 (308)
T ss_dssp             CCCCHHHHHHHH------CCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGC
T ss_pred             cCCcHHHHHhcc------ccccEEecccccCCCCHHHHHHHHhhCCCcEEEEccCCCCCC
Confidence            122444444443      4677887776422 224444444   3566666666555433

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.75  E-value=2.8  Score=29.07  Aligned_cols=74  Identities=18%  Similarity=0.104  Sum_probs=42.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC-ChH---------HHHHHHHcCCCEEEeCCCCcccHHHHHHHHHHHcCC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAPRIVIVDV-DDY---------RLSVAKKLGADNIVKVSTNLQDIAEEVEKIQKAMGT  167 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~-~~~---------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (216)
                      +|++.|.+..|...++.+...|.+ |+.+.+ .++         -.+.+++.+.......+..++.+.+.+++      .
T Consensus         2 kiv~~~~~~~g~~~l~~L~~~g~~-I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~i~~------~   74 (203)
T d2blna2           2 KTVVFAYHDMGCLGIEALLAAGYE-ISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQ------L   74 (203)
T ss_dssp             EEEEEECHHHHHHHHHHHHHTTCE-EEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHH------T
T ss_pred             eEEEEecCHHHHHHHHHHHHCCCC-EEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccchhhhhhhhh------h
Confidence            577789888999999999988986 544432 222         12445566665322211122333333332      3


Q ss_pred             CccEEEEcCCC
Q 048013          168 GIDVSFDCAGF  178 (216)
Q Consensus       168 ~~d~vi~~~g~  178 (216)
                      .+|+++..-..
T Consensus        75 ~~Dlii~~g~~   85 (203)
T d2blna2          75 SPDVIFSFYYR   85 (203)
T ss_dssp             CCSEEEEESCC
T ss_pred             cccceeeeecc
Confidence            68998876544

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=82.35  E-value=1.1  Score=32.07  Aligned_cols=31  Identities=26%  Similarity=0.274  Sum_probs=26.0

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      |+|+|+|.-|.-++-.+.++|.+ +..++.+.
T Consensus         5 VIVIGgG~AG~eAA~~aAR~G~k-tllit~~~   35 (230)
T d2cula1           5 VLIVGAGFSGAETAFWLAQKGVR-VGLLTQSL   35 (230)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCC-EEEEESCG
T ss_pred             EEEECcCHHHHHHHHHHHHCCCc-EEEEEecc
Confidence            67889999999999999999997 67776654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=82.13  E-value=1.3  Score=29.07  Aligned_cols=45  Identities=11%  Similarity=-0.005  Sum_probs=34.2

Q ss_pred             HHHHHHHcCCCCCCEEEEE--cCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 048013           84 GVHACRRANIGPETNVLIM--GSGPIGLVTMLAARAFGAPRIVIVDVDD  130 (216)
Q Consensus        84 a~~~l~~~~~~~~~~vlv~--Gag~~G~~~i~~a~~~g~~~vv~~~~~~  130 (216)
                      +...+. ....+++.++|+  |+|-+|.-++..+..+|.+ |.++.+.+
T Consensus        28 ~~d~l~-~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~-Vtlv~~~~   74 (156)
T d1djqa2          28 PEQVMD-GKKKIGKRVVILNADTYFMAPSLAEKLATAGHE-VTIVSGVH   74 (156)
T ss_dssp             HHHHHH-TCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCE-EEEEESSC
T ss_pred             HHHHhc-CccccCCceEEEecCCChHHHHHHHHHHHcCCe-EEEEecCC
Confidence            344443 446678888887  6789999999999999996 88887664

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.83  E-value=0.44  Score=33.98  Aligned_cols=51  Identities=12%  Similarity=0.139  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHHcCCCEEEe
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKKLGADNIVK  146 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~~g~~~~~~  146 (216)
                      .+++|+|+|.|.+++=++..+.+.+.. .-.+|.++..++.++..++..+..
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r~~~~-l~~tdi~~~~l~~l~~~g~~~V~i   88 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLTPPDH-LEKTDITEAALGALRQSRVKTVWI   88 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGG-GTTSCCCHHHHHHHHTCCCCEEEE
T ss_pred             cCceEEEECCchhHHHHHHHHhcCHHh-hcCCCCcHHHHHHHhccCCCeEEE
Confidence            589999999999999888888764321 222344445555555555554443

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=81.46  E-value=0.67  Score=32.85  Aligned_cols=31  Identities=23%  Similarity=0.519  Sum_probs=23.4

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 048013           99 VLIMGSGPIGLVTMLAARAFGAPRIVIVDVD  129 (216)
Q Consensus        99 vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~  129 (216)
                      ++|+|+|+-|+.++..+..+|.++|.+++..
T Consensus         6 vvVIG~GpAG~~aAi~aa~~g~k~V~vie~~   36 (240)
T d1feca1           6 LVVIGAGSGGLEAGWNAASLHKKRVAVIDLQ   36 (240)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHCCCEEEEESC
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEEEEe
Confidence            6788999999888777777776557677644

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=81.32  E-value=1.9  Score=30.80  Aligned_cols=50  Identities=14%  Similarity=0.268  Sum_probs=39.4

Q ss_pred             HHHHHcCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChHHHHHHHH
Q 048013           86 HACRRANIGPETNVLIMGSGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKK  138 (216)
Q Consensus        86 ~~l~~~~~~~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~~~~~~~~~~~~  138 (216)
                      ..++..+++++++||=+|+|. |.++-.+++. +. ++++++.++.-.+.+++
T Consensus        12 ~iv~~~~~~~~d~VlEIGpG~-G~LT~~Ll~~-~~-~v~avE~D~~l~~~l~~   61 (235)
T d1qama_          12 KIMTNIRLNEHDNIFEIGSGK-GHFTLELVQR-CN-FVTAIEIDHKLCKTTEN   61 (235)
T ss_dssp             HHHTTCCCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEECSCHHHHHHHHH
T ss_pred             HHHHhcCCCCCCeEEEECCCc-hHHHHHHHhC-cC-ceEEEeeccchHHHHHH
Confidence            344567789999999999875 7788888875 55 59999999887777765

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=80.75  E-value=0.98  Score=27.88  Aligned_cols=33  Identities=12%  Similarity=0.017  Sum_probs=21.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 048013           95 PETNVLIMGSGPIGLVTMLAARAFGAPRIVIVD  127 (216)
Q Consensus        95 ~~~~vlv~Gag~~G~~~i~~a~~~g~~~vv~~~  127 (216)
                      .|++|+|+|+|..|.-++.-+.....+.++...
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~   63 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSL   63 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEEC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEe
Confidence            579999999998876655544444444344433

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=80.70  E-value=1.3  Score=30.37  Aligned_cols=32  Identities=16%  Similarity=0.192  Sum_probs=24.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCC
Q 048013           98 NVLIMGSGPIGLVTMLAARAFGAP-RIVIVDVD  129 (216)
Q Consensus        98 ~vlv~Gag~~G~~~i~~a~~~g~~-~vv~~~~~  129 (216)
                      +|+|+|+|.+|+-++..++.++.. .|+++++.
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            589999999999988888887654 46666654

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=80.30  E-value=0.52  Score=34.86  Aligned_cols=31  Identities=19%  Similarity=0.288  Sum_probs=25.3

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 048013           97 TNVLIMGS-GPIGLVTMLAARAFGAPRIVIVDV  128 (216)
Q Consensus        97 ~~vlv~Ga-g~~G~~~i~~a~~~g~~~vv~~~~  128 (216)
                      ++|||+|+ |-+|..++..+...|.. +++++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~-vi~~~~   34 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDV-ELVLRT   34 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTE-EEECCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCE-EEEecC
Confidence            47999996 99999999999888885 665543