Citrus Sinensis ID: 048015

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
RNTKKATTEFLEPPLEQKNKHAVPSDDIQGYGHAYVVSEQQILDSSDALILFVCPAEYRKLNFWPNTPKGLSPRSDTSTITILTQEDDASGLQIKHNRGWVPVNPVTDALVILSNGKFKSIEHRAVKRPLSMYKKIKYGDYLRNSSKRRMERKAHTEMVKAQA
ccHHHHHHHHccccHHHHHHHccccccHHcccccccccccccccHHHHHHHHHccccccccccccccccccccccccccEEEEEEccccccEEEEEccEEEEccccccEEEEEEccEEccEEEEEEccccccccEEEHHHHHHHHHHcccccccccccccccc
ccHHHHHHHHHcccHHHHHHHHccccccccccccEEEcHHccccHHHHHHccccccccEEEcccccccccccccccccEEEEEEEccccccEEEEEcccEEEcccEcHHHHHHcccccccccEEEcEcccccHEEEEHHHHHHHHHHHHccccccHHEEEEcc
RNTKKAttefleppleqknkhavpsddiqgyghayvvseqqildssdalilfvcpaeyrklnfwpntpkglsprsdtstitiltqeddasglqikhnrgwvpvnpvtDALVILSngkfksiehravkrplsmykkikygdylrnsskRRMERKAHTEMVKAQA
rntkkattefleppleqknkhavpSDDIQGYGHAYVVSEQQILDSSDALILFVCPAEYRKLnfwpntpkglsprsdTSTITILTQEDDASGLQIKHNRGWVPVNPVTDALVILSngkfksiehravkrplsmykkikygdylrnsskrrmerkaHTEMVKAQA
RNTKKATTEFLEPPLEQKNKHAVPSDDIQGYGHAYVVSEQQILDSSDALILFVCPAEYRKLNFWPNTPKGLSPRSDTSTITILTQEDDASGLQIKHNRGWVPVNPVTDALVILSNGKFKSIEHRAVKRPLSMYKKIKYGDYLRNSSKRRMERKAHTEMVKAQA
***************************IQGYGHAYVVSEQQILDSSDALILFVCPAEYRKLNFWPNT************ITILTQEDDASGLQIKHNRGWVPVNPVTDALVILSNGKFKSIEHRAVKRPLSMYKKIKYGDYL*********************
**TKKATTEFLEPPLEQKNKHAVPSDDIQGYGHAYVVSEQQILDSSDALILFVCPAEYRKLNFWPNTPKGLSPRSDTSTITILTQEDDASGLQIKHNRGWVPVNPVTDALVILSNGKFKSIEHRAVKRPLSMYKKIKYGDYLRNSSKRRMERKAHTEMVKAQ*
RNTKKATTEFLEPPLEQKNKHAVPSDDIQGYGHAYVVSEQQILDSSDALILFVCPAEYRKLNFWPNTPKGLSPRSDTSTITILTQEDDASGLQIKHNRGWVPVNPVTDALVILSNGKFKSIEHRAVKRPLSMYKKIKYGDYLRNSS*****************
RNTKKATTEFLEPPLEQKNKHAVPSDDIQGYGHAYVVSEQQILDSSDALILFVCPAEYRKLNFWPNTPKGLSPRSDTSTITILTQEDDASGLQIKHNRGWVPVNPVTDALVILSNGKFKSIEHRAVKRPLSMYKKIKYGDYLRNSSKRRMERKAHTEMVKAQA
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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RNTKKATTEFLEPPLEQKNKHAVPSDDIQGYGHAYVVSEQQILDSSDALILFVCPAEYRKLNFWPNTPKGLSPRSDTSTITILTQEDDASGLQIKHNRGWVPVNPVTDALVILSNGKFKSIEHRAVKRPLSMYKKIKYGDYLRNSSKRRMERKAHTEMVKAQA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query163 2.2.26 [Sep-21-2011]
Q39224358 Protein SRG1 OS=Arabidops yes no 0.760 0.346 0.292 4e-15
A2A1A0352 S-norcoclaurine synthase N/A no 0.963 0.446 0.263 1e-13
D4N501364 Probable 2-oxoglutarate/F N/A no 0.435 0.195 0.369 9e-10
D4N502360 Codeine O-demethylase OS= N/A no 0.766 0.347 0.235 1e-09
D4N500364 Thebaine 6-O-demethylase N/A no 0.466 0.208 0.337 1e-08
Q9LTH8364 1-aminocyclopropane-1-car no no 0.478 0.214 0.366 2e-08
Q0JH50389 Gibberellin 20 oxidase 2 no no 0.404 0.169 0.4 4e-08
P0C5H5389 Gibberellin 20 oxidase 2 N/A no 0.404 0.169 0.4 4e-08
Q43383398 1-aminocyclopropane-1-car no no 0.374 0.153 0.457 7e-08
Q9LTH7366 1-aminocyclopropane-1-car no no 0.478 0.213 0.346 7e-08
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function desciption
 Score = 80.9 bits (198), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 80/195 (41%), Gaps = 71/195 (36%)

Query: 3   TKKATTEFLEPPLEQKNKHAVPSDDIQGYGHAYVVSEQQILDSSDALI------------ 50
            K    +F   P+E+K K     D+I+G+G A+VVSE Q LD +D               
Sbjct: 99  VKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPH 158

Query: 51  ----------------------------------LFVCPAEYRKL------------NFW 64
                                             L + P E  KL            N++
Sbjct: 159 LFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYY 218

Query: 65  PNTPK-----GLSPRSDTSTITILTQEDDASGLQIKHNRGWVPVNP--------VTDALV 111
           P  P+     GL+P SD+  +T+L Q +D  GLQIK +  WVPV P        + D L 
Sbjct: 219 PPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLE 278

Query: 112 ILSNGKFKSIEHRAV 126
           I++NG ++SIEHR V
Sbjct: 279 IITNGTYRSIEHRGV 293

Arabidopsis thaliana (taxid: 3702)
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|Q9LTH8|ACH11_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 11 OS=Arabidopsis thaliana GN=At5g59530 PE=2 SV=1 Back     alignment and function description
>sp|Q0JH50|GAOX2_ORYSJ Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1 Back     alignment and function description
>sp|P0C5H5|GAOX2_ORYSI Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1 Back     alignment and function description
>sp|Q43383|ACCH5_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 5 OS=Arabidopsis thaliana GN=2A6 PE=2 SV=2 Back     alignment and function description
>sp|Q9LTH7|ACH12_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 12 OS=Arabidopsis thaliana GN=At5g59540 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query163
297740339 943 unnamed protein product [Vitis vinifera] 0.969 0.167 0.360 3e-34
225440426 368 PREDICTED: protein SRG1-like [Vitis vini 0.773 0.342 0.374 3e-25
388517601 370 unknown [Medicago truncatula] 0.975 0.429 0.317 4e-25
356567967 361 PREDICTED: protein SRG1-like [Glycine ma 0.631 0.285 0.431 9e-23
356567965 364 PREDICTED: protein SRG1-like [Glycine ma 0.607 0.271 0.436 2e-22
225440424 340 PREDICTED: protein SRG1 [Vitis vinifera] 0.975 0.467 0.284 8e-21
18873846 348 putative ethylene-forming enzyme [Oryza 0.785 0.367 0.329 6e-20
357504569 336 Protein SRG1 [Medicago truncatula] gi|35 0.920 0.446 0.292 7e-20
359486618 358 PREDICTED: protein SRG1-like [Vitis vini 0.631 0.287 0.408 3e-19
296086204 367 unnamed protein product [Vitis vinifera] 0.631 0.280 0.408 3e-19
>gi|297740339|emb|CBI30521.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/258 (36%), Positives = 127/258 (49%), Gaps = 100/258 (38%)

Query: 1   RNTKKATTEFLEPPLEQKNKHAVPSDDIQGYGHAYVVSEQQILDSSDALILFV------- 53
           +  K + +EF E PL++KNK+A+ SDDIQGYG A+VVSE+Q LD SD L+L +       
Sbjct: 345 QGMKYSASEFFELPLQEKNKYAMASDDIQGYGQAFVVSEEQKLDWSDILVLVIYPTRFRK 404

Query: 54  ------CPAEYR-------------------------------------------KLNFW 64
                  P E++                                           ++N++
Sbjct: 405 LKFWPNAPKEFKEKIEVYSNEVKRVGEELLCSLSLIMGMDKDTLLGLHKEFVQALRVNYY 464

Query: 65  PNTP-----KGLSPRSDTSTITILTQEDDASGLQIKHNRGWVPVNPVTDALV-------- 111
           P         G+SP SDTS +TIL Q+DD +GLQIKH+  WVPV P+ +ALV        
Sbjct: 465 PTCSIPDQVLGVSPHSDTSILTILMQDDDVTGLQIKHSGEWVPVKPIPNALVVNIGDVIE 524

Query: 112 ILSNGKFKSIEHRAV-------------------------------KRPLSMYKKIKYGD 140
           I SNGK++SIEHRAV                               ++P+ +YKK++YGD
Sbjct: 525 IWSNGKYRSIEHRAVTNKNRARISFASFILPHDDVEIEPFDHLVDSQQPIKIYKKVRYGD 584

Query: 141 YLRNSSKRRMERKAHTEM 158
           YLR+S KR+ME K HTEM
Sbjct: 585 YLRHSMKRKMEGKFHTEM 602

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225440426|ref|XP_002271148.1| PREDICTED: protein SRG1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|388517601|gb|AFK46862.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356567967|ref|XP_003552186.1| PREDICTED: protein SRG1-like [Glycine max] Back     alignment and taxonomy information
>gi|356567965|ref|XP_003552185.1| PREDICTED: protein SRG1-like [Glycine max] Back     alignment and taxonomy information
>gi|225440424|ref|XP_002271117.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|18873846|gb|AAL79792.1|AC079874_15 putative ethylene-forming enzyme [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357504569|ref|XP_003622573.1| Protein SRG1 [Medicago truncatula] gi|355497588|gb|AES78791.1| Protein SRG1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|359486618|ref|XP_002278096.2| PREDICTED: protein SRG1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296086204|emb|CBI31645.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query163
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.411 0.188 0.437 1.1e-20
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.411 0.185 0.412 1.8e-20
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.411 0.189 0.387 9.7e-20
TAIR|locus:2149214348 AT5G20400 [Arabidopsis thalian 0.404 0.189 0.439 1.8e-18
TAIR|locus:2149907349 AT5G20550 [Arabidopsis thalian 0.404 0.189 0.409 1.7e-15
TAIR|locus:2154744349 AT5G54000 [Arabidopsis thalian 0.392 0.183 0.375 1.9e-15
TAIR|locus:2082058363 JRG21 "jasmonate-regulated gen 0.429 0.192 0.309 4.2e-15
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.411 0.180 0.362 2e-14
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.411 0.184 0.469 2e-12
TAIR|locus:2153924341 DMR6 "DOWNY MILDEW RESISTANT 6 0.429 0.205 0.385 3.2e-12
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 157 (60.3 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
 Identities = 35/80 (43%), Positives = 51/80 (63%)

Query:    60 KLNFWPNTPK-----GLSPRSDTSTITILTQEDDASGLQIKHNRGWVPVNPVTDALV--- 111
             +LN++P  P+     GL+P SD++ +TIL Q ++  GLQIK N  WV V P+ +ALV   
Sbjct:   212 RLNYYPRCPEPDKVIGLTPHSDSTGLTILLQANEVEGLQIKKNAKWVSVKPLPNALVVNV 271

Query:   112 -----ILSNGKFKSIEHRAV 126
                  I++NG ++SIEHR V
Sbjct:   272 GDILEIITNGTYRSIEHRGV 291
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149214 AT5G20400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149907 AT5G20550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154744 AT5G54000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082058 JRG21 "jasmonate-regulated gene 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153924 DMR6 "DOWNY MILDEW RESISTANT 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00021353001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (373 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query163
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 3e-27
PLN02216357 PLN02216, PLN02216, protein SRG1 7e-21
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 2e-16
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 9e-15
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 1e-12
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 2e-12
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 6e-12
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 9e-12
PLN02947374 PLN02947, PLN02947, oxidoreductase 2e-11
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 1e-09
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 1e-09
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 2e-09
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 3e-09
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 1e-08
PLN02704335 PLN02704, PLN02704, flavonol synthase 1e-07
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-07
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 3e-07
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 3e-06
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 5e-06
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 7e-06
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-05
PLN02485329 PLN02485, PLN02485, oxidoreductase 5e-05
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 5e-05
PLN02997325 PLN02997, PLN02997, flavonol synthase 6e-05
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 3e-04
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 3e-04
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 3e-04
PLN03178 360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 0.002
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  104 bits (260), Expect = 3e-27
 Identities = 62/193 (32%), Positives = 82/193 (42%), Gaps = 70/193 (36%)

Query: 4   KKATTEFLEPPLEQKNKHAVPSDDIQGYGHAYVVSEQQILDSSDALILFVCPA------- 56
           +K   EF   PLE+K K+ +    +QGYG A+V SE Q LD  +   L V P        
Sbjct: 102 EKVAREFFMLPLEEKQKYPMAPGTVQGYGQAFVFSEDQKLDWCNMFALGVEPHFIRNPKL 161

Query: 57  -----------------EYRKL--------------------------------NFWPNT 67
                            E R+L                                N++P  
Sbjct: 162 WPTKPARFSETLEVYSREIRELCQRLLKYIAMTLGLKEDRFEEMFGEAVQAVRMNYYPPC 221

Query: 68  PK-----GLSPRSDTSTITILTQEDDAS-GLQIKHNRGWVPVNPVTDALVI--------L 113
            +     GLSP SD S +T+L Q   +  GLQI  +  WVPV+PV +ALVI        L
Sbjct: 222 SRPDLVLGLSPHSDGSALTVLQQGKGSCVGLQILKDNTWVPVHPVPNALVINIGDTLEVL 281

Query: 114 SNGKFKSIEHRAV 126
           +NGK+KS+EHRAV
Sbjct: 282 TNGKYKSVEHRAV 294

Length = 361
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 163
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02904357 oxidoreductase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02704335 flavonol synthase 100.0
PLN02997325 flavonol synthase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02485329 oxidoreductase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 99.98
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.57
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 98.87
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 87.82
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=1.3e-42  Score=291.00  Aligned_cols=161  Identities=36%  Similarity=0.682  Sum_probs=138.1

Q ss_pred             CHHHHHHHHHcCCCHHHHccccCCCCCccccccccccCccccCCccccccccc----------cchh-------------
Q 048015            1 RNTKKATTEFLEPPLEQKNKHAVPSDDIQGYGHAYVVSEQQILDSSDALILFV----------CPAE-------------   57 (163)
Q Consensus         1 ~~~~~~~~~FF~lp~e~K~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~----------~P~~-------------   57 (163)
                      +++++++++||+||.|+|+++...++..+||+........+..||+|.|.+..          ||..             
T Consensus        97 ~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~~y~~  176 (357)
T PLN02216         97 DKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSA  176 (357)
T ss_pred             HHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHHHHHH
Confidence            46899999999999999999977666678997665444556789999997653          3311             


Q ss_pred             ----------------------------------hhhccCCCCCCC-----CCCCCCCCCceEEEeecCCCCCceeeeCC
Q 048015           58 ----------------------------------YRKLNFWPNTPK-----GLSPRSDTSTITILTQEDDASGLQIKHNR   98 (163)
Q Consensus        58 ----------------------------------~~~~~~~P~~p~-----~~~~htD~g~lTlL~q~d~v~GLqV~~~g   98 (163)
                                                        ..++|+||+||.     ++++|||+|+||||+|+++++||||+++|
T Consensus       177 ~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV~~~g  256 (357)
T PLN02216        177 EVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIKKDG  256 (357)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCceeEEECC
Confidence                                              136799999975     58899999999999995579999999999


Q ss_pred             ceEEcCCCCCeEEE--------EeCCEeecccCccCCC---------------------Cc---------CCCCCccHHH
Q 048015           99 GWVPVNPVTDALVI--------LSNGKFKSIEHRAVKR---------------------PL---------SMYKKIKYGD  140 (163)
Q Consensus        99 ~Wi~v~p~~galvV--------~TNg~~kS~~HRVv~~---------------------P~---------~~Y~~~~~~e  140 (163)
                      +|++|+|+||+|||        ||||+|||++|||+++                     |+         ++|++++++|
T Consensus       257 ~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~p~~Y~~~t~~e  336 (357)
T PLN02216        257 KWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALFKSLTTKE  336 (357)
T ss_pred             EEEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCCCCCCCCcCHHH
Confidence            99999999999999        9999999999999877                     32         6899999999


Q ss_pred             HHHHHHHhccCCcchhhhhcc
Q 048015          141 YLRNSSKRRMERKAHTEMVKA  161 (163)
Q Consensus       141 y~~~~~~~~~~g~~~~~~~~~  161 (163)
                      |+..+++....+++.++.+|+
T Consensus       337 y~~~~~~~~~~~~~~~~~~~~  357 (357)
T PLN02216        337 YFDGLFSRELDGKAYLDAMRI  357 (357)
T ss_pred             HHHHHHhcccCCcchhhhhcC
Confidence            999999999999999998875

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query163
1w9y_A319 The Structure Of Acc Oxidase Length = 319 1e-07
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 5e-06
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 6e-06
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 6e-06
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure 
Iteration: 1

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 65  PNTPKGLSPRSDTSTITILTQEDDASGLQIKHNRGWVPVNP--------VTDALVILSNG 116
           P+  KGL   +D   I +L Q+D  SGLQ+  +  W+ V P        + D L +++NG
Sbjct: 168 PDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNG 227
Query: 117 KFKSIEHRAV 126
           K+KS+ HR +
Sbjct: 228 KYKSVXHRVI 237
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query163
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 3e-34
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 5e-33
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 4e-18
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 4e-15
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 9e-15
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 7e-12
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  121 bits (307), Expect = 3e-34
 Identities = 51/267 (19%), Positives = 83/267 (31%), Gaps = 110/267 (41%)

Query: 1   RNTKKATTEFLEPPLEQKNKHAV--PSDDIQGYGHAYVVSEQQILDSSDALILFVC---- 54
              KKA  EF    +E+K K+A    +  IQGYG     +    L+  D           
Sbjct: 93  ERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEK 152

Query: 55  ---------PAEYR---------------------------------------------- 59
                    P++Y                                               
Sbjct: 153 RDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQM 212

Query: 60  KLNFWPNTPK-----GLSPRSDTSTITILTQEDDASGLQIKHNRGWVPVNPVTDALV--- 111
           K+N++P  P+     G+   +D S +T +   +   GLQ+ +   WV    V D++V   
Sbjct: 213 KINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHI 271

Query: 112 -----ILSNGKFKSIEHRAV-----KR-----------------PLS---------MYKK 135
                ILSNGK+KSI HR +      R                 PL           +  
Sbjct: 272 GDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPP 331

Query: 136 IKYGDYLRNSSKRRMERKAHTEMVKAQ 162
             +  ++    + ++  K   E+V  +
Sbjct: 332 RTFAQHI----EHKLFGKEQEELVSEK 354
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query163
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=5.6e-40  Score=273.75  Aligned_cols=154  Identities=29%  Similarity=0.503  Sum_probs=130.4

Q ss_pred             CHHHHHHHHHcCCCHHHHccccCCC--CCccccccccccCccccCCccccccccc----------cchh-----------
Q 048015            1 RNTKKATTEFLEPPLEQKNKHAVPS--DDIQGYGHAYVVSEQQILDSSDALILFV----------CPAE-----------   57 (163)
Q Consensus         1 ~~~~~~~~~FF~lp~e~K~~~~~~~--~~~~Gy~~~~~~~~~~~~d~~e~~~~~~----------~P~~-----------   57 (163)
                      +++++.+++||+||.|+|+++....  ...+||+........+..||+|+|++..          ||..           
T Consensus        93 ~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y  172 (356)
T 1gp6_A           93 ERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEY  172 (356)
T ss_dssp             HHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcchhhhHHHHHH
Confidence            3688999999999999999998753  3679998776555567889999998753          3421           


Q ss_pred             --------------------------------------hhhccCCCCCCC-----CCCCCCCCCceEEEeecCCCCCcee
Q 048015           58 --------------------------------------YRKLNFWPNTPK-----GLSPRSDTSTITILTQEDDASGLQI   94 (163)
Q Consensus        58 --------------------------------------~~~~~~~P~~p~-----~~~~htD~g~lTlL~q~d~v~GLqV   94 (163)
                                                            .+++|+||+||.     ++++|||+|+||||+| |+++||||
T Consensus       173 ~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q-d~v~GLQV  251 (356)
T 1gp6_A          173 AKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQL  251 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEE-CSCCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEEEE-cCCCCeEE
Confidence                                                  024789999974     4789999999999999 88999999


Q ss_pred             eeCCceEEcCCCCCeEEE--------EeCCEeecccCccCCC----------------------Cc---------CCCCC
Q 048015           95 KHNRGWVPVNPVTDALVI--------LSNGKFKSIEHRAVKR----------------------PL---------SMYKK  135 (163)
Q Consensus        95 ~~~g~Wi~v~p~~galvV--------~TNg~~kS~~HRVv~~----------------------P~---------~~Y~~  135 (163)
                      +++|+|++|+|+||+|||        ||||+|||+.|||+++                      |+         ++|++
T Consensus       252 ~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~~~~~~p~~y~~  331 (356)
T 1gp6_A          252 FYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPP  331 (356)
T ss_dssp             EETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCSSSCCSSCC
T ss_pred             ecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhhcCCCCCccCCC
Confidence            999999999999999999        9999999999999986                      22         58999


Q ss_pred             ccHHHHHHHHHHhccCCcch
Q 048015          136 IKYGDYLRNSSKRRMERKAH  155 (163)
Q Consensus       136 ~~~~ey~~~~~~~~~~g~~~  155 (163)
                      ++++||+..+++++.+|+..
T Consensus       332 ~t~~eyl~~~~~~~~d~~~~  351 (356)
T 1gp6_A          332 RTFAQHIEHKLFGKEQEELV  351 (356)
T ss_dssp             EEHHHHHHHHHHHHHHHHC-
T ss_pred             ccHHHHHHHHHHhccCcchh
Confidence            99999999999887777543
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 163
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 2e-08
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 1e-07
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 3e-06
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 0.004
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 50.0 bits (118), Expect = 2e-08
 Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 44/135 (32%)

Query: 63  FWPNTPKGLSPRSDTSTITILTQEDDASGLQIKHNRGWVPVNPVTDALV--------ILS 114
             P    G+   +D S +T +   +   GLQ+ +   WV    V D++V        ILS
Sbjct: 220 PQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILS 278

Query: 115 NGKFKSIEHRAVKRP----LSM---------------------------YKKIKYGDYLR 143
           NGK+KSI HR +       +S                            +    +  ++ 
Sbjct: 279 NGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHI- 337

Query: 144 NSSKRRMERKAHTEM 158
              + ++  K   E+
Sbjct: 338 ---EHKLFGKEQEEL 349
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query163
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 99.96
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 99.96
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

Probab=100.00  E-value=3.8e-37  Score=249.08  Aligned_cols=155  Identities=30%  Similarity=0.523  Sum_probs=126.1

Q ss_pred             CHHHHHHHHHcCCCHHHHccccCCCCCccccccccccCccccCCccccccccccc--------h---h------------
Q 048015            1 RNTKKATTEFLEPPLEQKNKHAVPSDDIQGYGHAYVVSEQQILDSSDALILFVCP--------A---E------------   57 (163)
Q Consensus         1 ~~~~~~~~~FF~lp~e~K~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~P--------~---~------------   57 (163)
                      +++++++++||+||.|+|+++...+....||...     ....||+|.|.+...|        .   .            
T Consensus        46 ~~~~~~~~~fF~lp~e~K~k~~~~~~~~~g~~~~-----~~~~d~~e~~~~~~~~~~~~~~~~~~~~~fr~~~~~y~~~~  120 (307)
T d1w9ya1          46 DTVEKMTKGHYKKCMEQRFKELVASKALEGVQAE-----VTDMDWESTFFLKHLPISNISEVPDLDEEYREVMRDFAKRL  120 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----GGGCCCCEEEEEEEESCCGGGGCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHhhhhhcCCCCCcCcccc-----ccccChhhhcccccccccCcccCCccchHHHHHHHHHHHHH
Confidence            3678999999999999999986543345566432     2356899988775421        1   0            


Q ss_pred             ----------------------------------hhhccCCCCCCC-----CCCCCCCCCceEEEeecCCCCCceeeeCC
Q 048015           58 ----------------------------------YRKLNFWPNTPK-----GLSPRSDTSTITILTQEDDASGLQIKHNR   98 (163)
Q Consensus        58 ----------------------------------~~~~~~~P~~p~-----~~~~htD~g~lTlL~q~d~v~GLqV~~~g   98 (163)
                                                        ..++++||+++.     ++++|||+|+||||+|++.++||||.++|
T Consensus       121 ~~la~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~q~~~~ggl~~~~~g  200 (307)
T d1w9ya1         121 EKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG  200 (307)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTHHHHHHHTTTCCEEEEEEEECCCCSCGGGGSSCCCBCCSSSEEEEEESSSCCCEEEEETT
T ss_pred             HHHHHHHHHHHHHHcCCchHHHHhhhhccccccccceecCCCCCcccccccccccccccceeEEeeccCCCCeEEEecCC
Confidence                                              025789999875     58999999999999995568999999999


Q ss_pred             ceEEcCCCCCeEEE--------EeCCEeecccCccCCC---------------------Cc------------CCCCCcc
Q 048015           99 GWVPVNPVTDALVI--------LSNGKFKSIEHRAVKR---------------------PL------------SMYKKIK  137 (163)
Q Consensus        99 ~Wi~v~p~~galvV--------~TNg~~kS~~HRVv~~---------------------P~------------~~Y~~~~  137 (163)
                      +|++|+|++|+|||        ||||+||||.|||+++                     |+            ++|+|++
T Consensus       201 ~Wi~v~p~~~~~vVnvGD~l~~~Tng~~kSt~HRVv~~~~~~R~Si~~F~~p~~d~~i~p~~~~v~~~~~~~p~~y~~~t  280 (307)
T d1w9ya1         201 QWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFV  280 (307)
T ss_dssp             EEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSSCCEEEEEEEECCTTCEECCCGGGC--------CCCCCEE
T ss_pred             cEEEeccCCCeEEEEcchhhHHhhCCcccCcCceeecCCCCCcEEEEEEeeCCCCCEEeCCHHHhcccCccCCCCCCCee
Confidence            99999999999999        9999999999999987                     32            5799999


Q ss_pred             HHHHHHHHHHhccCCcch-hhhhc
Q 048015          138 YGDYLRNSSKRRMERKAH-TEMVK  160 (163)
Q Consensus       138 ~~ey~~~~~~~~~~g~~~-~~~~~  160 (163)
                      ++||++.+++.++++|.. ++.+|
T Consensus       281 ~~ey~~~~~~~~~~~~~~~~~~~~  304 (307)
T d1w9ya1         281 FDDYMKLYAGLKFQAKEPRFEAMK  304 (307)
T ss_dssp             HHHHHHTTTTTTCSSHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCcccHHHHHhh
Confidence            999999999988888763 66665
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure