Citrus Sinensis ID: 048024

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
IIIEIMEKLVSSWFNVRPLPEAYVFPPEQRPGKLFFPQGKSIPVLDLGGQDRKETIQLIMKASKEFGFFQVTNHGVSKDLIADTLALAKEFHAMPAEDKICECSKDPDRSCKLYTSSGKYATEEKHYWRDCLIHPSHSFEKYMQFWPAKPVRYREVIGKYSIEVRKLSSKILELLSEGLKLSSGYFSSDLSESPILLINHYPPCPDPSLTLGLARHRDPGVVSIVLQGDVHGLQVFKDEEWIGVEPIPHAFVVNIGYVLQIISNGKLKGAEHRVVTNSTDARTTVSFFVYPSNDSLIEPEKALVNACDPPIYRALKFKDFHVDFLSKSADAEAVQKFISSRSIY
cccccHHHHHHccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHHcccccccEEEEEcccccccccccccEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHcccccEEEEEcccccccccccccccccccccccEEEEccccccEEEEEccEEEEcccccccEEEEEcccHHHHHcccccccccEEEccccccEEEEEEEEccccccEEEccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHcccc
ccHHHHHHHHHHHcccccccHHcccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEEEEEEcccccccccHHHHEEEEccccHcccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEEEEcccccccccccEEEEcccccEEEEEEcccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEccccccEcccHHHcccccccccccccHHHHHHHHHHccccHHHHHHHHHHHccc
IIIEIMEKLVSSwfnvrplpeayvfppeqrpgklffpqgksipvldlggqdRKETIQLIMKASKEFgffqvtnhgvskDLIADTLALAKEFhampaedkicecskdpdrscklytssgkyateekhywrdclihpshsfekymqfwpakpvryREVIGKYSIEVRKLSSKILELLSEGLklssgyfssdlsespillinhyppcpdpsltlglarhrdpgVVSIVLQGdvhglqvfkdeewigvepiphaFVVNIGYVLQIIsngklkgaehrvvtnstdarttVSFFvypsndsliepekalvnacdppiyralkfkdfHVDFLSKSADAEAVQKFISSRSIY
IIIEIMEKLVSSWFNVRPLPEAYVFPPEQRPGKLFFPQGKSIPVLDLGGQDRKETIQLIMKASKEFGFFQVTNHGVSKDLIADTLALAKEFHAMPAEdkicecskdpdrsCKLYTSsgkyateekHYWRDCLIHPSHSFEKYMQFWPAKPVRYREVIGKYSIEVRKLSSKILELLSEGLKLSSGYFSSDLSESPILLINHYPPCPDPSLTLGLARHRDPGVVSIVLQGDVHGLQVFKDEEWIGVEPIPHAFVVNIGYVLQIISNGKLKGAEHRVvtnstdarttvSFFVYPSNDSLIEPEKALVNACDPPIYRALKFKDFHVDFLSKSADAEAVQKFISSRSIY
IIIEIMEKLVSSWFNVRPLPEAYVFPPEQRPGKLFFPQGKSIPVLDLGGQDRKETIQLIMKASKEFGFFQVTNHGVSKDLIADTLALAKEFHAMPAEDKICECSKDPDRSCKLYTSSGKYATEEKHYWRDCLIHPSHSFEKYMQFWPAKPVRYREVIGKYSIEVRklsskilellseglklssgYFSSDLSESPILLINHYPPCPDPSLTLGLARHRDPGVVSIVLQGDVHGLQVFKDEEWIGVEPIPHAFVVNIGYVLQIISNGKLKGAEHRVVTNSTDARTTVSFFVYPSNDSLIEPEKALVNACDPPIYRALKFKDFHVDFLSKSADAEAVQKFISSRSIY
*IIEIMEKLVSSWFNVRPLPEAYVFPPEQRPGKLFFPQGKSIPVLDLGGQDRKETIQLIMKASKEFGFFQVTNHGVSKDLIADTLALAKEFHAMPAEDKICECSKDPDRSCKLYTSSGKYATEEKHYWRDCLIHPSHSFEKYMQFWPAKPVRYREVIGKYSIEVRKLSSKILELLSEGLKLSSGYFSSDLSESPILLINHYPPCPDPSLTLGLARHRDPGVVSIVLQGDVHGLQVFKDEEWIGVEPIPHAFVVNIGYVLQIISNGKLKGAEHRVVTNSTDARTTVSFFVYPSNDSLIEPEKALVNACDPPIYRALKFKDFHVDFLSK*****************
IIIEIMEKLVSSWFNVRPLPEAYVFPPE***********KSIPVLDLGGQDRKETIQLIMKASKEFGFFQVTNHGVSKDLIADTLALAKEFHAMPAEDKICE*******SCKLYTSSGKYATEEKHYWRDCLIHPSHSFEKYMQFWPAKPVRYREVIGKYSIEVRKLSSKILELLSEGLKLSSGYFSSDLSESPILLINHYPPCPDPSLTLGLARHRDPGVVSIVLQGDVHGLQVFKDEEWIGVEPIPHAFVVNIGYVLQIISNGKLKGAEHRVVTNSTDARTTVSFFVYPSNDSLIEPEKALVNACDPPIYRALKFKDFHVDFLSKSADAEAVQKFISSRSI*
IIIEIMEKLVSSWFNVRPLPEAYVFPPEQRPGKLFFPQGKSIPVLDLGGQDRKETIQLIMKASKEFGFFQVTNHGVSKDLIADTLALAKEFHAMPAEDKICECSKDPDRSCKLYTSSGKYATEEKHYWRDCLIHPSHSFEKYMQFWPAKPVRYREVIGKYSIEVRKLSSKILELLSEGLKLSSGYFSSDLSESPILLINHYPPCPDPSLTLGLARHRDPGVVSIVLQGDVHGLQVFKDEEWIGVEPIPHAFVVNIGYVLQIISNGKLKGAEHRVVTNSTDARTTVSFFVYPSNDSLIEPEKALVNACDPPIYRALKFKDFHVDFLSKSADAEAVQKFISSRSIY
****************RPLPEAYVFPPEQRPGKLFFPQGKSIPVLDLGGQDRKETIQLIMKASKEFGFFQVTNHGVSKDLIADTLALAKEFHAMPAEDKICECSKDPDRSCKLYTSSGKYATEEKHYWRDCLIHPSHSFEKYMQFWPAKPVRYREVIGKYSIEVRKLSSKILELLSEGLKLSSGYFSSDLSESPILLINHYPPCPDPSLTLGLARHRDPGVVSIVLQGDVHGLQVFKDEEWIGVEPIPHAFVVNIGYVLQIISNGKLKGAEHRVVTNSTDARTTVSFFVYPSNDSLIEPEKALVNACDPPIYRALKFKDFHVDFLSKSADAEAVQKFISSR***
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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IIIEIMEKLVSSWFNVRPLPEAYVFPPEQRPGKLFFPQGKSIPVLDLGGQDRKETIQLIMKASKEFGFFQVTNHGVSKDLIADTLALAKEFHAMPAEDKICECSKDPDRSCKLYTSSGKYATEEKHYWRDCLIHPSHSFEKYMQFWPAKPVRYREVIGKYSIEVRKLSSKILELLSEGLKLSSGYFSSDLSESPILLINHYPPCPDPSLTLGLARHRDPGVVSIVLQGDVHGLQVFKDEEWIGVEPIPHAFVVNIGYVLQIISNGKLKGAEHRVVTNSTDARTTVSFFVYPSNDSLIEPEKALVNACDPPIYRALKFKDFHVDFLSKSADAEAVQKFISSRSIY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query344 2.2.26 [Sep-21-2011]
P24397344 Hyoscyamine 6-dioxygenase N/A no 0.941 0.941 0.401 7e-68
Q40062339 2'-deoxymugineic-acid 2'- N/A no 0.857 0.870 0.397 3e-59
Q40061338 Mugineic-acid 3-dioxygena N/A no 0.802 0.816 0.385 3e-52
Q9ZWQ9335 Flavonol synthase/flavano N/A no 0.892 0.916 0.348 2e-48
Q06942364 Naringenin,2-oxoglutarate N/A no 0.941 0.890 0.317 1e-44
Q7XZQ8365 Flavone synthase OS=Petro N/A no 0.793 0.747 0.348 3e-44
Q96330336 Flavonol synthase/flavano no no 0.938 0.961 0.310 7e-44
Q7XZQ7368 Flavanone 3-dioxygenase O N/A no 0.912 0.853 0.320 2e-43
Q05964365 Naringenin,2-oxoglutarate N/A no 0.837 0.789 0.348 4e-43
Q07512348 Flavonol synthase/flavano N/A no 0.805 0.795 0.354 4e-43
>sp|P24397|HY6H_HYONI Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1 Back     alignment and function desciption
 Score =  257 bits (657), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 136/339 (40%), Positives = 210/339 (61%), Gaps = 15/339 (4%)

Query: 6   MEKLVSSWFNVRPLPEAYVFPPEQRPGKLFFPQGKSIPVLDLGGQDRKETIQLIMKASKE 65
           M   VS+W + + + E+++ P ++R  K   P G  +P++DL  Q     +Q I KA ++
Sbjct: 1   MATFVSNW-STKSVSESFIAPLQKRAEK-DVPVGNDVPIIDLQ-QHHHLLVQQITKACQD 57

Query: 66  FGFFQVTNHGVSKDLIADTLALAKEFHAMPAEDK-----ICECSK---DPDRSCKLYTSS 117
           FG FQV NHG  ++L+ +T+ + KEF A+PAE+K       E +K     ++  KLY   
Sbjct: 58  FGLFQVINHGFPEELMLETMEVCKEFFALPAEEKEKFKPKGEAAKFELPLEQKAKLYVEG 117

Query: 118 GKYATEEKHYWRDCLIHPSHSFEK-YMQFWPAKPVRYREVIGKYSIEVRKLSSKILELLS 176
            + + EE  YW+D L H  H  ++  +  WP KP +YREV+ KYS+EVRKL+ ++L+ + 
Sbjct: 118 EQLSNEEFLYWKDTLAHGCHPLDQDLVNSWPEKPAKYREVVAKYSVEVRKLTMRMLDYIC 177

Query: 177 EGLKLSSGYFSSDLSESPILLINHYPPCPDPSLTLGLARHRDPGVVSIVLQGDVHGLQ-- 234
           EGL L  GYF ++LS+  ++L N+YPPCPDPS TLG   H D  ++++ LQ D+ GLQ  
Sbjct: 178 EGLGLKLGYFDNELSQIQMMLTNYYPPCPDPSSTLGSGGHYDGNLITL-LQQDLPGLQQL 236

Query: 235 VFKDEEWIGVEPIPHAFVVNIGYVLQIISNGKLKGAEHRVVTNSTDARTTVSFFVYPSND 294
           + KD  WI V+PIP AFVVN+G  L++I+N K +G+ HRVVT+ T  R +++  + P   
Sbjct: 237 IVKDATWIAVQPIPTAFVVNLGLTLKVITNEKFEGSIHRVVTDPTRDRVSIATLIGPDYS 296

Query: 295 SLIEPEKALVNACDPPIYRALKFKDFHVDFLSKSADAEA 333
             IEP K L+N  +PP+Y+   + +F   +LS  +D ++
Sbjct: 297 CTIEPAKELLNQDNPPLYKPYSYSEFADIYLSDKSDYDS 335

Hyoscyamus niger (taxid: 4079)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 1EC: 1
>sp|Q40062|IDS3_HORVU 2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3 Back     alignment and function description
>sp|Q40061|IDS2_HORVU Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZWQ9|FLS_CITUN Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1 Back     alignment and function description
>sp|Q06942|FL3H_MALDO Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus domestica PE=2 SV=1 Back     alignment and function description
>sp|Q7XZQ8|FNSI_PETCR Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1 Back     alignment and function description
>sp|Q96330|FLS1_ARATH Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1 Back     alignment and function description
>sp|Q7XZQ7|FL3H_PETCR Flavanone 3-dioxygenase OS=Petroselinum crispum GN=FHT PE=1 SV=1 Back     alignment and function description
>sp|Q05964|FL3H_DIACA Naringenin,2-oxoglutarate 3-dioxygenase OS=Dianthus caryophyllus GN=FHT PE=2 SV=1 Back     alignment and function description
>sp|Q07512|FLS_PETHY Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
449458500341 PREDICTED: hyoscyamine 6-dioxygenase-lik 0.965 0.973 0.549 1e-113
225437856341 PREDICTED: hyoscyamine 6-dioxygenase [Vi 0.956 0.964 0.597 1e-112
255583202333 1-aminocyclopropane-1-carboxylate oxidas 0.944 0.975 0.579 1e-110
224066261341 predicted protein [Populus trichocarpa] 0.956 0.964 0.582 1e-109
224066259341 predicted protein [Populus trichocarpa] 0.956 0.964 0.573 1e-108
356551044337 PREDICTED: hyoscyamine 6-dioxygenase-lik 0.947 0.967 0.585 1e-105
359480009339 PREDICTED: LOW QUALITY PROTEIN: hyoscyam 0.944 0.958 0.570 1e-105
356536832341 PREDICTED: hyoscyamine 6-dioxygenase-lik 0.962 0.970 0.541 1e-105
356573567337 PREDICTED: hyoscyamine 6-dioxygenase-lik 0.947 0.967 0.573 1e-104
224082794345 predicted protein [Populus trichocarpa] 0.941 0.939 0.546 1e-100
>gi|449458500|ref|XP_004146985.1| PREDICTED: hyoscyamine 6-dioxygenase-like [Cucumis sativus] gi|449518372|ref|XP_004166216.1| PREDICTED: hyoscyamine 6-dioxygenase-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 183/333 (54%), Positives = 253/333 (75%), Gaps = 1/333 (0%)

Query: 8   KLVSSWFNVRPLPEAYVFPPEQRPGKLFFPQGKSIPVLDLGGQDRKETIQLIMKASKEFG 67
           K VS+W  V  +PE+YV+PPE+RPG +  P  K+IPV+DL  +DR   ++ I+ ASKEFG
Sbjct: 7   KFVSNWETVESVPESYVYPPEKRPGNIVVPMAKAIPVIDLSIRDRTLLVRKILDASKEFG 66

Query: 68  FFQVTNHGVSKDLIADTLALAKEFHAMPAEDKICECSKDPDRSCKLYTSSGKYATEEKHY 127
           FFQ+ NHGVSK +  +T+ + KEFHAM   +K  ECSKDP+RSC++YTSS  Y  E+ H 
Sbjct: 67  FFQIINHGVSKKVSEETMRIFKEFHAMSGPEKAKECSKDPNRSCRVYTSSENYTKEQVHC 126

Query: 128 WRDCLIHPSHSFEKYMQFWPAKPVRYREVIGKYSIEVRKLSSKILELLSEGLKLSSGYFS 187
           WRD LI   H  EKY+ FWP KP +YREV+G Y + +RKL  +ILEL+SEGL L  GYF 
Sbjct: 127 WRDALIFNCHPLEKYVHFWPQKPPKYREVVGAYCMAMRKLVLEILELMSEGLGLGKGYFG 186

Query: 188 SDLSESPILLINHYPPCPDPSLTLGLARHRDPGVVSIVLQGDVHGLQVFKDEEWIGVEPI 247
            ++SE+P+LL+NHYPPCP+PSLTLGL++H DP +++I+ Q DV+GLQV KD +WIGV+PI
Sbjct: 187 GEMSENPLLLVNHYPPCPNPSLTLGLSQHCDPSLITILFQ-DVNGLQVLKDGQWIGVQPI 245

Query: 248 PHAFVVNIGYVLQIISNGKLKGAEHRVVTNSTDARTTVSFFVYPSNDSLIEPEKALVNAC 307
            +AFVVNIG+VLQII+NGKL+ AEHR VTNS  +R ++++ VYP +++++EP K ++N  
Sbjct: 246 DNAFVVNIGFVLQIITNGKLQAAEHRAVTNSKTSRQSLTYLVYPKDEAMMEPAKCMINEA 305

Query: 308 DPPIYRALKFKDFHVDFLSKSADAEAVQKFISS 340
           +PP YR+L FKDF  ++L ++ D +AV ++I +
Sbjct: 306 NPPRYRSLNFKDFQRNYLPRAVDTKAVMQYIET 338

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225437856|ref|XP_002264085.1| PREDICTED: hyoscyamine 6-dioxygenase [Vitis vinifera] gi|297744130|emb|CBI37100.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255583202|ref|XP_002532366.1| 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis] gi|223527922|gb|EEF30009.1| 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224066261|ref|XP_002302052.1| predicted protein [Populus trichocarpa] gi|222843778|gb|EEE81325.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224066259|ref|XP_002302051.1| predicted protein [Populus trichocarpa] gi|222843777|gb|EEE81324.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356551044|ref|XP_003543889.1| PREDICTED: hyoscyamine 6-dioxygenase-like [Glycine max] Back     alignment and taxonomy information
>gi|359480009|ref|XP_003632389.1| PREDICTED: LOW QUALITY PROTEIN: hyoscyamine 6-dioxygenase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356536832|ref|XP_003536937.1| PREDICTED: hyoscyamine 6-dioxygenase-like [Glycine max] Back     alignment and taxonomy information
>gi|356573567|ref|XP_003554929.1| PREDICTED: hyoscyamine 6-dioxygenase-like [Glycine max] Back     alignment and taxonomy information
>gi|224082794|ref|XP_002306841.1| predicted protein [Populus trichocarpa] gi|222856290|gb|EEE93837.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
TAIR|locus:2153924341 DMR6 "DOWNY MILDEW RESISTANT 6 0.965 0.973 0.371 1.1e-55
TAIR|locus:2127691349 AT4G10500 [Arabidopsis thalian 0.965 0.951 0.352 2.1e-52
UNIPROTKB|Q40062339 IDS3 "2'-deoxymugineic-acid 2' 0.854 0.867 0.383 9.2e-52
TAIR|locus:2127686348 AT4G10490 [Arabidopsis thalian 0.930 0.919 0.338 9.8e-48
TAIR|locus:2040575366 AT2G36690 [Arabidopsis thalian 0.933 0.877 0.316 1.9e-42
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.933 0.865 0.343 5.2e-42
TAIR|locus:2042356357 AT2G44800 [Arabidopsis thalian 0.898 0.865 0.322 6.6e-42
TAIR|locus:2081962357 AT3G60290 [Arabidopsis thalian 0.886 0.854 0.328 2e-40
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.880 0.858 0.337 8.7e-40
TAIR|locus:2082058363 JRG21 "jasmonate-regulated gen 0.880 0.834 0.345 7.8e-39
TAIR|locus:2153924 DMR6 "DOWNY MILDEW RESISTANT 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 126/339 (37%), Positives = 187/339 (55%)

Query:     8 KLVSSWFNVRPLPEAYVFPPEQRPGKLFFPQGKSIPVLDLGGQDRKETIQLIMKASKEFG 67
             KL+S+ F    LPE YV P   RP      Q +  P++DL   DR   IQ I +A   FG
Sbjct:     4 KLISTGFRHTTLPENYVRPISDRPRLSEVSQLEDFPLIDLSSTDRSFLIQQIHQACARFG 63

Query:    68 FFQVTNHGVSKDLIADTLALAKEFHAMPAEDKICECSKDPDRSCKLYTSSGKYATEEKHY 127
             FFQV NHGV+K +I + +++A+EF +M  E+K+   S DP ++ +L TS      EE + 
Sbjct:    64 FFQVINHGVNKQIIDEMVSVAREFFSMSMEEKMKLYSDDPTKTTRLSTSFN-VKKEEVNN 122

Query:   128 WRDCLIHPSHSFEKYMQFWPAKPVRYREVIGKYSIEVRXXXXXXXXXXXXXXXXXXXYFS 187
             WRD L    +   KY+  WP+ P  ++E++ KYS EVR                   Y  
Sbjct:   123 WRDYLRLHCYPIHKYVNEWPSNPPSFKEIVSKYSREVREVGFKIEELISESLGLEKDYMK 182

Query:   188 SDLSES-PILLINHYPPCPDPSLTLGLARHRDPGVVSIVLQGD-VHGLQVFKDEEWIGVE 245
               L E    + +N+YPPCP+P LT GL  H DP  ++I+LQ   V GLQ+  D +W  V 
Sbjct:   183 KVLGEQGQHMAVNYYPPCPEPELTYGLPAHTDPNALTILLQDTTVCGLQILIDGQWFAVN 242

Query:   246 PIPHAFVVNIGYVLQIISNGKLKGAEHRVVTNSTDARTTVSFFVYPSNDSLIEPEKALVN 305
             P P AFV+NIG  LQ +SNG  K   HR VTN+ + R +V+ F+ P++ +++ P K L  
Sbjct:   243 PHPDAFVINIGDQLQALSNGVYKSVWHRAVTNTENPRLSVASFLCPADCAVMSPAKPLWE 302

Query:   306 ACDP---PIYRALKFKDFHVDFLSKSADAE-AVQKFISS 340
             A D    P+Y+   + +++  F S++ D E  ++ F+++
Sbjct:   303 AEDDETKPVYKDFTYAEYYKKFWSRNLDQEHCLENFLNN 341
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009617 "response to bacterium" evidence=IGI;RCA
GO:0009620 "response to fungus" evidence=IEP;IGI
GO:0000165 "MAPK cascade" evidence=RCA
GO:0001666 "response to hypoxia" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0031347 "regulation of defense response" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
GO:0045087 "innate immune response" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
TAIR|locus:2127691 AT4G10500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q40062 IDS3 "2'-deoxymugineic-acid 2'-dioxygenase" [Hordeum vulgare (taxid:4513)] Back     alignment and assigned GO terms
TAIR|locus:2127686 AT4G10490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040575 AT2G36690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042356 AT2G44800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081962 AT3G60290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082058 JRG21 "jasmonate-regulated gene 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.766
4th Layer1.14.11.7LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00007513001
SubName- Full=Chromosome chr7 scaffold_192, whole genome shotgun sequence; (349 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 1e-95
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 8e-73
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 1e-71
PLN02704335 PLN02704, PLN02704, flavonol synthase 6e-62
PLN02947374 PLN02947, PLN02947, oxidoreductase 1e-60
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-58
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-57
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 3e-57
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 4e-57
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 5e-56
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 1e-54
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 2e-51
PLN02997325 PLN02997, PLN02997, flavonol synthase 2e-47
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 7e-45
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 3e-44
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 4e-44
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 4e-42
PLN02216357 PLN02216, PLN02216, protein SRG1 3e-41
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 7e-33
PLN02485329 PLN02485, PLN02485, oxidoreductase 9e-33
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 2e-32
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 9e-29
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 3e-28
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 1e-27
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 2e-27
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 3e-26
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 4e-25
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 2e-11
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  287 bits (735), Expect = 1e-95
 Identities = 130/328 (39%), Positives = 192/328 (58%), Gaps = 3/328 (0%)

Query: 7   EKLVSSWFNVRPLPEAYVFPPEQRPGKLFFPQGKSIPVLDLGGQDRKETIQLIMKASKEF 66
            KL+S+      LPE+YV P  +RP        +++PV+DLG  DR + +Q I  A + +
Sbjct: 3   TKLLSTGIRHTTLPESYVRPESERPRLSEVSTCENVPVIDLGSPDRAQVVQQIGDACRRY 62

Query: 67  GFFQVTNHGVSKDLIADTLALAKEFHAMPAEDKICECSKDPDRSCKLYTSSGKYATEEKH 126
           GFFQV NHGVS +L+   LA+A EF  +P E+K+   S DP ++ +L TS      E+ H
Sbjct: 63  GFFQVINHGVSAELVEKMLAVAHEFFRLPVEEKMKLYSDDPTKTMRLSTSF-NVRKEKVH 121

Query: 127 YWRDCLIHPSHSFEKYMQFWPAKPVRYREVIGKYSIEVRKLSSKILELLSEGLKLSSGYF 186
            WRD L    +  +KY+  WP+ P  ++E++  Y  EVR+L  ++ E +SE L L   Y 
Sbjct: 122 NWRDYLRLHCYPLDKYVPEWPSNPPSFKEIVSTYCREVRELGFRLQEAISESLGLEKDYI 181

Query: 187 SSDLSESPI-LLINHYPPCPDPSLTLGLARHRDPGVVSIVLQG-DVHGLQVFKDEEWIGV 244
            + L E    + +N+YPPCP+P LT GL  H DP  ++I+LQ   V GLQV KD +W+ V
Sbjct: 182 KNVLGEQGQHMAVNYYPPCPEPELTYGLPAHTDPNALTILLQDQQVAGLQVLKDGKWVAV 241

Query: 245 EPIPHAFVVNIGYVLQIISNGKLKGAEHRVVTNSTDARTTVSFFVYPSNDSLIEPEKALV 304
            P P AFV+NIG  LQ +SNG+ K   HR V N+   R +V+ F+ P +D++I P K L 
Sbjct: 242 NPHPGAFVINIGDQLQALSNGRYKSVWHRAVVNTDKERMSVASFLCPCDDAVISPAKKLT 301

Query: 305 NACDPPIYRALKFKDFHVDFLSKSADAE 332
           +     +YR   + +++  F S++ D E
Sbjct: 302 DDGTAAVYRDFTYAEYYKKFWSRNLDQE 329

Length = 337
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 344
PLN02216357 protein SRG1 100.0
PLN02947374 oxidoreductase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904357 oxidoreductase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02704335 flavonol synthase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02485329 oxidoreductase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.91
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.87
PLN03176120 flavanone-3-hydroxylase; Provisional 99.82
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.63
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.31
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 94.56
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 90.76
TIGR02466201 conserved hypothetical protein. This family consis 83.96
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 81.06
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=1.2e-78  Score=578.15  Aligned_cols=334  Identities=25%  Similarity=0.487  Sum_probs=295.3

Q ss_pred             hhhHHHHHhc-CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCccEEeCCC----CCcHHHHHHHHHHHHHcCeEEEEeCCC
Q 048024            3 IEIMEKLVSS-WFNVRPLPEAYVFPPEQRPGKL-FFPQGKSIPVLDLGG----QDRKETIQLIMKASKEFGFFQVTNHGV   76 (344)
Q Consensus         3 ~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~lPvIDls~----~~~~~~~~~l~~A~~~~GfF~l~nhgi   76 (344)
                      ++.|+.|+.+ ++  ..||+.|++|++++|... .......||+|||+.    +.+++++++|.+||++||||||+||||
T Consensus        14 ~~~~~~~~~~~~~--~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI   91 (357)
T PLN02216         14 VPSVQEMVKEKMI--TTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGI   91 (357)
T ss_pred             chhHHHHHhcCCC--CCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCC
Confidence            4668899876 56  899999999998887421 011125799999981    234678999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCCChhhhhhhcCCCCCCCCCcccCCCcccccccccccccccCCCCCc-ccccccCCCCCcchHH
Q 048024           77 SKDLIADTLALAKEFHAMPAEDKICECSKDPDRSCKLYTSSGKYATEEKHYWRDCLIHPSHSF-EKYMQFWPAKPVRYRE  155 (344)
Q Consensus        77 ~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~~~~~~~d~~E~~~~~~~p~-~~~~~~wP~~~~~fr~  155 (344)
                      +.++++++++++++||+||.|+|+++.... ....|| +........+..||+|.|.+...|. ...+|.||+.++.||+
T Consensus        92 ~~~li~~~~~~~~~FF~LP~eeK~k~~~~~-~~~~Gy-~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~  169 (357)
T PLN02216         92 DSSFLDKVKSEIQDFFNLPMEEKKKLWQRP-GEIEGF-GQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRD  169 (357)
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHhhhcCC-CCcccc-CccccccccccCCceeeeeeeccCcccccchhcccchHHHHH
Confidence            999999999999999999999999997654 346788 5543333445679999998765553 3457999998899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccC-C-CCceeEeeccCCCCCCCCCCccccccCCCCeeEEEe-CCCCC
Q 048024          156 VIGKYSIEVRKLSSKILELLSEGLKLSSGYFSSDL-S-ESPILLINHYPPCPDPSLTLGLARHRDPGVVSIVLQ-GDVHG  232 (344)
Q Consensus       156 ~~~~y~~~~~~la~~ll~~l~~~Lgl~~~~l~~~~-~-~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTil~q-d~~~G  232 (344)
                      .+++|++.|.+++.+|+++|+++||+++++|.+.+ . ..+.||++|||||+.++..+|+++|||+|+||||+| ++++|
T Consensus       170 ~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~G  249 (357)
T PLN02216        170 TLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEG  249 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCc
Confidence            99999999999999999999999999999998887 4 457899999999998888899999999999999999 47999


Q ss_pred             cccccCCcEEecCCCCCeEEEEechhhHHHhCCccccccceeccCCCCCeEEEEeeeCCCCCceeecCccccCCCCCCCC
Q 048024          233 LQVFKDEEWIGVEPIPHAFVVNIGYVLQIISNGKLKGAEHRVVTNSTDARTTVSFFVYPSNDSLIEPEKALVNACDPPIY  312 (344)
Q Consensus       233 LqV~~~g~W~~V~~~pg~~vVn~Gd~l~~~TnG~~ks~~HRV~~~~~~~R~Si~~F~~p~~d~~i~p~~~~~~~~~p~~y  312 (344)
                      |||+++|+|++|+|.||++|||+||+||+||||+|||++|||+.+..++|||++||++|+.|++|.|+++++++++|++|
T Consensus       250 LQV~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~p~~Y  329 (357)
T PLN02216        250 LQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALF  329 (357)
T ss_pred             eeEEECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCCCCCC
Confidence            99999999999999999999999999999999999999999998888899999999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHhcCCCchhHHHHhhh
Q 048024          313 RALKFKDFHVDFLSKSADAEAVQKFISS  340 (344)
Q Consensus       313 ~~~t~~e~~~~~~~~~~~~~~~~~~~~~  340 (344)
                      +++||+||++.++++.++++..++.++|
T Consensus       330 ~~~t~~ey~~~~~~~~~~~~~~~~~~~~  357 (357)
T PLN02216        330 KSLTTKEYFDGLFSRELDGKAYLDAMRI  357 (357)
T ss_pred             CCcCHHHHHHHHHhcccCCcchhhhhcC
Confidence            9999999999999999999999998875

>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-27
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-27
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 9e-27
1w9y_A319 The Structure Of Acc Oxidase Length = 319 1e-23
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 5e-12
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 3e-06
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 8e-06
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 1e-05
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure 
Iteration: 1

 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 138/314 (43%), Gaps = 19/314 (6%)
Query: 1   IIIEIMEKLVSSWFNVRPLPEAYVFPPEQRP--GKLFFPQ----GKSIPVLDLGGQD--- 51
           + +E +E L  S   +  +P+ Y+ P E+      +F  +    G  +P +DL   +   
Sbjct: 1   VAVERVESLAKS--GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDD 58
Query: 52  ---RKETIQLIMKASKEFGFFQVTNHGVSKDLIADTLALAKEFHAMPAEDKICECSKDPD 108
              R+  I+ + KAS ++G   + NHG+  DL+       +EF ++  E+K    +    
Sbjct: 59  EKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQAT 118
Query: 109 RSCKLYTSSGKYATEEKHYWRDCLIHPSHSFEKY-MQFWPAKPVRYREVIGKYSIEVRXX 167
              + Y S        +  W D   H ++  EK  +  WP  P  Y E   +Y+  +R  
Sbjct: 119 GKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLL 178
Query: 168 XXXXXXXXXXXXXXXXXYFSSDLSESPILL----INHYPPCPDPSLTLGLARHRDPGVVS 223
                                ++     LL    IN+YP CP P L LG+  H D   ++
Sbjct: 179 ATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT 238
Query: 224 IVLQGDVHGLQVFKDEEWIGVEPIPHAFVVNIGYVLQIISNGKLKGAEHRVVTNSTDART 283
            +L   V GLQ+F + +W+  + +P + V++IG  L+I+SNGK K   HR + N    R 
Sbjct: 239 FILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRI 298
Query: 284 TVSFFVYPSNDSLI 297
           + + F  P  D ++
Sbjct: 299 SWAVFCEPPKDKIV 312
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-121
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-112
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 2e-70
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 4e-68
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 3e-66
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 2e-64
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  352 bits (906), Expect = e-121
 Identities = 90/346 (26%), Positives = 153/346 (44%), Gaps = 20/346 (5%)

Query: 9   LVSSWFNVRPLPEAYVFPPEQRPG------KLFFPQGKSIPVLDLGG------QDRKETI 56
           L  S   +  +P+ Y+ P E+         +     G  +P +DL        + R+  I
Sbjct: 10  LAKS--GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCI 67

Query: 57  QLIMKASKEFGFFQVTNHGVSKDLIADTLALAKEFHAMPAEDKICECSKDPDRSCKLYTS 116
           + + KAS ++G   + NHG+  DL+       +EF ++  E+K    +       + Y S
Sbjct: 68  EELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGS 127

Query: 117 SGKYATEEKHYWRDCLIHPSHSFEKY-MQFWPAKPVRYREVIGKYSIEVRKLSSKILELL 175
                   +  W D   H ++  EK  +  WP  P  Y E   +Y+  +R L++K+ + L
Sbjct: 128 KLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKAL 187

Query: 176 SEGLKLSSGYFSSDLSESP----ILLINHYPPCPDPSLTLGLARHRDPGVVSIVLQGDVH 231
           S GL L       ++         + IN+YP CP P L LG+  H D   ++ +L   V 
Sbjct: 188 SVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVP 247

Query: 232 GLQVFKDEEWIGVEPIPHAFVVNIGYVLQIISNGKLKGAEHRVVTNSTDARTTVSFFVYP 291
           GLQ+F + +W+  + +P + V++IG  L+I+SNGK K   HR + N    R + + F  P
Sbjct: 248 GLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEP 307

Query: 292 SNDS-LIEPEKALVNACDPPIYRALKFKDFHVDFLSKSADAEAVQK 336
             D  +++P   +V+   P  +    F       L      E V +
Sbjct: 308 PKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEELVSE 353
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 95.02
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 93.81
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 92.75
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 87.89
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 87.07
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=2.5e-78  Score=576.64  Aligned_cols=331  Identities=27%  Similarity=0.477  Sum_probs=292.0

Q ss_pred             hhhHHHHHhcCCCCCCCCCCCCCCCCCCCCCCC---CC---CCCCccEEeCCC--C----CcHHHHHHHHHHHHHcCeEE
Q 048024            3 IEIMEKLVSSWFNVRPLPEAYVFPPEQRPGKLF---FP---QGKSIPVLDLGG--Q----DRKETIQLIMKASKEFGFFQ   70 (344)
Q Consensus         3 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---~~---~~~~lPvIDls~--~----~~~~~~~~l~~A~~~~GfF~   70 (344)
                      ++.|++||++++  ..||+.|++|+++++....   ..   ....||+|||+.  .    .+.+++++|.+||+++||||
T Consensus         4 ~~~v~~l~~~~~--~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~   81 (356)
T 1gp6_A            4 VERVESLAKSGI--ISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMH   81 (356)
T ss_dssp             CCCHHHHHHTTC--SSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             cccHHHHHhcCC--CCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEE
Confidence            567999999987  9999999999777764221   00   023699999992  2    24568999999999999999


Q ss_pred             EEeCCCCHHHHHHHHHHHHHhcCCChhhhhhhcCCCC-CCCCCcccCCCcccccccccccccccCCCCCcc-cccccCCC
Q 048024           71 VTNHGVSKDLIADTLALAKEFHAMPAEDKICECSKDP-DRSCKLYTSSGKYATEEKHYWRDCLIHPSHSFE-KYMQFWPA  148 (344)
Q Consensus        71 l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~-~~~~Gy~~~~~~~~~~~~~d~~E~~~~~~~p~~-~~~~~wP~  148 (344)
                      |+||||+.++++++++.+++||+||.|+|+++..... ...+|| +........+..||+|+|.+...|.. ..+|.||+
T Consensus        82 v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy-~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~  160 (356)
T 1gp6_A           82 LINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGY-GSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPK  160 (356)
T ss_dssp             EESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEE-ECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCC
T ss_pred             EeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCcccc-CcCcccCCCCCCChhheeeeecCCccccccccCCC
Confidence            9999999999999999999999999999999987653 357888 55444444567899999998765542 45799999


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccCC----CCceeEeeccCCCCCCCCCCccccccCCCCeeE
Q 048024          149 KPVRYREVIGKYSIEVRKLSSKILELLSEGLKLSSGYFSSDLS----ESPILLINHYPPCPDPSLTLGLARHRDPGVVSI  224 (344)
Q Consensus       149 ~~~~fr~~~~~y~~~~~~la~~ll~~l~~~Lgl~~~~l~~~~~----~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTi  224 (344)
                      .+++||+.+++|++.|.+++.+|+++|+++||+++++|.+.+.    ..+.||++||||++.++..+|+++|||+|+|||
T Consensus       161 ~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTl  240 (356)
T 1gp6_A          161 TPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTF  240 (356)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEE
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEE
Confidence            9999999999999999999999999999999999999998873    667899999999998888899999999999999


Q ss_pred             EEeCCCCCcccccCCcEEecCCCCCeEEEEechhhHHHhCCccccccceeccCCCCCeEEEEeeeCCCCCc-eeecCccc
Q 048024          225 VLQGDVHGLQVFKDEEWIGVEPIPHAFVVNIGYVLQIISNGKLKGAEHRVVTNSTDARTTVSFFVYPSNDS-LIEPEKAL  303 (344)
Q Consensus       225 l~qd~~~GLqV~~~g~W~~V~~~pg~~vVn~Gd~l~~~TnG~~ks~~HRV~~~~~~~R~Si~~F~~p~~d~-~i~p~~~~  303 (344)
                      |+||.++||||+++|+|++|+|.||++|||+||+||+||||+|||+.|||+.+.+++|||++||++|+.|+ +|.|++++
T Consensus       241 L~qd~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~  320 (356)
T 1gp6_A          241 ILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEM  320 (356)
T ss_dssp             EEECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGG
T ss_pred             EEEcCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhh
Confidence            99999999999999999999999999999999999999999999999999998888999999999999999 99999999


Q ss_pred             cCCCCCCCCCCccHHHHHHHHHhcCCCchhHHH
Q 048024          304 VNACDPPIYRALKFKDFHVDFLSKSADAEAVQK  336 (344)
Q Consensus       304 ~~~~~p~~y~~~t~~e~~~~~~~~~~~~~~~~~  336 (344)
                      +++++|++|+++||+||++.+++++++++...+
T Consensus       321 ~~~~~p~~y~~~t~~eyl~~~~~~~~d~~~~~~  353 (356)
T 1gp6_A          321 VSVESPAKFPPRTFAQHIEHKLFGKEQEELVSE  353 (356)
T ss_dssp             CCSSSCCSSCCEEHHHHHHHHHHHHHHHHC---
T ss_pred             cCCCCCccCCCccHHHHHHHHHHhccCcchhhh
Confidence            999999999999999999999998877665443
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 344
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 5e-60
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 5e-53
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 2e-50
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 3e-37
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  194 bits (493), Expect = 5e-60
 Identities = 89/338 (26%), Positives = 153/338 (45%), Gaps = 20/338 (5%)

Query: 1   IIIEIMEKLVSSWFNVRPLPEAYVFPPEQRPG------KLFFPQGKSIPVLDLGG----- 49
           + +E +E L  S   +  +P+ Y+ P E+         +     G  +P +DL       
Sbjct: 1   VAVERVESLAKS--GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDD 58

Query: 50  -QDRKETIQLIMKASKEFGFFQVTNHGVSKDLIADTLALAKEFHAMPAEDKICECSKDPD 108
            + R+  I+ + KAS ++G   + NHG+  DL+       +EF ++  E+K    +    
Sbjct: 59  EKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQAT 118

Query: 109 RSCKLYTSSGKYATEEKHYWRDCLIH-PSHSFEKYMQFWPAKPVRYREVIGKYSIEVRKL 167
              + Y S        +  W D   H      ++ +  WP  P  Y E   +Y+  +R L
Sbjct: 119 GKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLL 178

Query: 168 SSKILELLSEGLKLSSGYFSSDLSESPILL----INHYPPCPDPSLTLGLARHRDPGVVS 223
           ++K+ + LS GL L       ++     LL    IN+YP CP P L LG+  H D   ++
Sbjct: 179 ATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT 238

Query: 224 IVLQGDVHGLQVFKDEEWIGVEPIPHAFVVNIGYVLQIISNGKLKGAEHRVVTNSTDART 283
            +L   V GLQ+F + +W+  + +P + V++IG  L+I+SNGK K   HR + N    R 
Sbjct: 239 FILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRI 298

Query: 284 TVSFFVYPSNDSLI-EPEKALVNACDPPIYRALKFKDF 320
           + + F  P  D ++ +P   +V+   P  +    F   
Sbjct: 299 SWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQH 336
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 91.13
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.3e-75  Score=555.70  Aligned_cols=324  Identities=27%  Similarity=0.483  Sum_probs=281.8

Q ss_pred             chhhHHHHHhcCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCccEEeCCC--C----CcHHHHHHHHHHHHHcCeE
Q 048024            2 IIEIMEKLVSSWFNVRPLPEAYVFPPEQRPGKLF------FPQGKSIPVLDLGG--Q----DRKETIQLIMKASKEFGFF   69 (344)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~------~~~~~~lPvIDls~--~----~~~~~~~~l~~A~~~~GfF   69 (344)
                      .|+-||.||++|+  ..||+.|++|+.++|....      .....+||||||+.  .    .+.+++++|.+||+++|||
T Consensus         2 ~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf   79 (349)
T d1gp6a_           2 AVERVESLAKSGI--ISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVM   79 (349)
T ss_dssp             CCCCHHHHHHTTC--SSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEE
T ss_pred             CCcchHHHHhCCC--ccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEE
Confidence            5789999999999  9999999999988875321      12356899999992  1    2567899999999999999


Q ss_pred             EEEeCCCCHHHHHHHHHHHHHhcCCChhhhhhhcCCCCCCCCCcccCCCcccccccccccccccCCCCCc-ccccccCCC
Q 048024           70 QVTNHGVSKDLIADTLALAKEFHAMPAEDKICECSKDPDRSCKLYTSSGKYATEEKHYWRDCLIHPSHSF-EKYMQFWPA  148 (344)
Q Consensus        70 ~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~~~~~~~d~~E~~~~~~~p~-~~~~~~wP~  148 (344)
                      ||+||||+.++++++++++++||+||.|+|+++.........+||+...........++.+.+.....+. ....|.||.
T Consensus        80 ~l~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~  159 (349)
T d1gp6a_          80 HLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPK  159 (349)
T ss_dssp             EEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCC
T ss_pred             EEEccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhccccccccccccccccc
Confidence            9999999999999999999999999999999997765333344445544444445556655543322222 335789999


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccC----CCCceeEeeccCCCCCCCCCCccccccCCCCeeE
Q 048024          149 KPVRYREVIGKYSIEVRKLSSKILELLSEGLKLSSGYFSSDL----SESPILLINHYPPCPDPSLTLGLARHRDPGVVSI  224 (344)
Q Consensus       149 ~~~~fr~~~~~y~~~~~~la~~ll~~l~~~Lgl~~~~l~~~~----~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTi  224 (344)
                      ..+.|++.+.+|++.|.+++..|+++++++||++++++.+.+    ...+.||++|||+++.+...+|+++|||+|+|||
T Consensus       160 ~~~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTl  239 (349)
T d1gp6a_         160 TPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTF  239 (349)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEE
T ss_pred             ccchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEE
Confidence            999999999999999999999999999999999999988776    3556899999999998888999999999999999


Q ss_pred             EEeCCCCCcccccCCcEEecCCCCCeEEEEechhhHHHhCCccccccceeccCCCCCeEEEEeeeCCCCCcee-ecCccc
Q 048024          225 VLQGDVHGLQVFKDEEWIGVEPIPHAFVVNIGYVLQIISNGKLKGAEHRVVTNSTDARTTVSFFVYPSNDSLI-EPEKAL  303 (344)
Q Consensus       225 l~qd~~~GLqV~~~g~W~~V~~~pg~~vVn~Gd~l~~~TnG~~ks~~HRV~~~~~~~R~Si~~F~~p~~d~~i-~p~~~~  303 (344)
                      |+|+.++||||+++|+|++|+|.+|++|||+||+||+||||+||||+|||+.+.+++||||+||++|+.|++| +|+++|
T Consensus       240 L~q~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~  319 (349)
T d1gp6a_         240 ILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEM  319 (349)
T ss_dssp             EEECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGG
T ss_pred             EeccCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHH
Confidence            9999999999999999999999999999999999999999999999999999988999999999999999865 899999


Q ss_pred             cCCCCCCCCCCccHHHHHHHHHhc
Q 048024          304 VNACDPPIYRALKFKDFHVDFLSK  327 (344)
Q Consensus       304 ~~~~~p~~y~~~t~~e~~~~~~~~  327 (344)
                      +++++|++|+|+|++||++.++..
T Consensus       320 v~~~~p~~y~~~t~~e~~~~rl~~  343 (349)
T d1gp6a_         320 VSVESPAKFPPRTFAQHIEHKLFG  343 (349)
T ss_dssp             CCSSSCCSSCCEEHHHHHHHHHHH
T ss_pred             cCCCCCCCCCCccHHHHHHHHHhc
Confidence            999999999999999999998853
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure